Citrus Sinensis ID: 021201

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310------
Protein Sequence
MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQAVKKVVPRKLAEAKNKKGLTPRALFSEQHRDLKEKGEKWMKDTASSCMIVATLIATVVFAAALTVPGGNKEDTGLPFFLHNVSFKIFAVSNVISLVASTLSIVVFLSLVTPRYAEKDFLSLLPRKLYVGLGTLFIAIAAMMVVFSATSFIVFTDGSTWIAILVIVVPSVPAILFFYLHFRLFDDILRSVFVSDYLIPKCKTSLFYKEGETKVKQQKKTKQLNGNFTIQCACSTNV
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHcccHHHHHHHHHccHHHHHHHHccccccccccHHHHHHHcccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEcccccEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEccccccHEHHHHHccHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHEEHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEccccccEcccccccEccccEEEEEEccccc
Coil and Loop (DISEMBL)
MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVdstdgegnnilhlagklappdrlnvvsgSALQMQRELLWFQAVKKVVPRKLAeaknkkgltpralfSEQHRDLKEKGEKWMKDTASSCMIVATLIATVVFAAAltvpggnkedtglpfflhnvsFKIFAVSNVISLVASTLSIVVFLSLvtpryaekdFLSLLPRKLYVGLGTLFIAIAAMMVVFSATSFIVFTDGSTWIAILVIVVPSVPAILFFYLHFRLFDDILRsvfvsdylipkcktslfykegeTKVKQQKKTkqlngnftiqcacstnv
Flexible Loop (DISEMBL)
MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHlagklappdrLNVVSGSALQMQRELLWFQAVKKVVPRKLaeaknkkgltpralfseqhrDLKEKGEKWMKDTASSCMIVATLIATVVFAAALTVPGGNKEDTGLPFFLHNVSFKIFAVSNVISLVASTLSIVVFLSLVTPRYAEKDFLSLLPRKLYVGLGTLFIAIAAMMVVFSATSFIVFTDGSTWIAILVIVVPSVPAILFFYLHFRLFDDILRSVFVSDYLIPKCKTSLFYKEGETKVKQQkktkqlngnftiqcacstnv
Low Complexity Region (SEG)
MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQAVKKVVPRKLAEAKNKKGLTPRALFSEQHRDLKEKGEKWMKDTASSCMIVATLIATVVFAAALTVPGGNKEDTGLPFFLHNVSFKIFAVSNVISLVASTLSIVVFLSLVTPRYAEKDFLSLLPRKLYVGLGTLFIAIAAMMVVFSATSFIVFTDGSTWIAILVIVVPSVPAILFFYLHFRLFDDILRSVFVSDYLIPKCKTSLFYKEGEtkvkqqkktkqLNGNFTIQCACSTNV
Disordered region (IsUnstruct)
***CDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQAVKKVVPRKL****************************WMKDTASSCMIVATLIATVVFAAALTVPGGNKEDTGLPFFLHNVSFKIFAVSNVISLVASTLSIVVFLSLVTPRYAEKDFLSLLPRKLYVGLGTLFIAIAAMMVVFSATSFIVFTDGSTWIAILVIVVPSVPAILFFYLHFRLFDDILRSVFVSDYLIPKCKTSLFYKEG**************GNFTIQCA*****
Disordered Region (DISOPRED)
MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQAVKKVVPRKLAEAKNKKGLTPRALFSEQHRDLKEKGEKWMKDTASSCMIVATLIATVVFAAALTVPGGNKEDTGLPFFLHNVSFKIFAVSNVISLVASTLSIVVFLSLVTPRYAEKDFLSLLPRKLYVGLGTLFIAIAAMMVVFSATSFIVFTDGSTWIAILVIVVPSVPAILFFYLHFRLFDDILRSVFVSDYL****************************************
Disordered Region (DISEMBL)
MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQAVKKVVPRKLAEAKNKKGLTPRALFSEQHRDLKEKGEKWMKDTASSCMIVATLIATVVFAAALTVPGGNKEDTGLPFFLHNVSFKIFAVSNVISLVASTLSIVVFLSLVTPRYAEKDFLSLLPRKLYVGLGTLFIAIAAMMVVFSATSFIVFTDGSTWIAILVIVVPSVPAILFFYLHFRLFDDILRSVFVSDYLIPKCKTSLFYKEGETKVKQQKKTKQLNGNFTIQCACSTNV
Disordered Region (DISPRO)
MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQAVKKVVPRKLAEAKNKKGLTPRALFSEQHRDLKEKGEKWMKDTASSCMIVATLIATVVFAAALTVPGGNKEDTGLPFFLHNVSFKIFAVSNVISLVASTLSIVVFLSLVTPRYAEKDFLSLLPRKLYVGLGTLFIAIAAMMVVFSATSFIVFTDGSTWIAILVIVVPSVPAILFFYLHFRLFDDILRSVFVSDYLIPKCKTSLFYKEGETKVKQQKKTKQLNGNFTIQCACST**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQAVKKVVPRKLAEAKNKKGLTPRALFSEQHRDLKEKGEKWMKDTASSCMIVATLIATVVFAAALTVPGGNKEDTGLPFFLHNVSFKIFAVSNVISLVASTLSIVVFLSLVTPRYAEKDFLSLLPRKLYVGLGTLFIAIAAMMVVFSATSFIVFTDGSTWIAILVIVVPSVPAILFFYLHFRLFDDILRSVFVSDYLIPKCKTSLFYKEGETKVKQQKKTKQLNGNFTIQCACSTNV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	316	2.2.26 [Sep-21-2011]
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.417	0.223	0.333	1e-09
Q9ZU96	532	Ankyrin repeat-containing	no	no	0.803	0.477	0.221	1e-07

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 74/141 (52%), Gaps = 9/141 (6%)

Query: 111 RDLKEKGEKWMKDTASSCMIVATLIATVVFAAALTVPGGNKEDTGLPFFLHNVSFKIFAV 170
           ++L++   + + +  +S  +VA L ATV FAA  TVPGG+  D G    +   SFKIF +
Sbjct: 405 KELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDNND-GSAVVVGRASFKIFFI 463

Query: 171 SNVISLVASTLSIVVFLSLVTPRY-AEKDFLSLLPRKLYVGLGTLFIAIAAMMVVFSATS 229
            N ++L  S   +VV ++LV     AEK  + ++ +        +++A     V F A+S
Sbjct: 464 FNALALFTSLAVVVVQITLVRGETKAEKRVVEVINK-------LMWLASMCTSVAFLASS 516

Query: 230 FIVFTDGSTWIAILVIVVPSV 250
           +IV    + W A LV VV  V
Sbjct: 517 YIVVGRKNEWAAELVTVVGGV 537

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 71/321 (22%), Positives = 129/321 (40%), Gaps = 67/321 (20%)

Query: 5   DENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPD--- 61
           D+   T  H+AV  R +E+ + I   D       +++  D +GN  LH+A + A P    
Sbjct: 193 DKKGQTALHMAVKGRSLEVVEEILQADYT-----ILNERDRKGNTALHIATRKARPQITS 247

Query: 62  ---RLNVVSGSALQMQREL-------LWFQAVKKVVPRKLAEAKNKKG----------LT 101
                  +  +A+  Q+E        L +      +   L EA  K G            
Sbjct: 248 LLLTFTAIEVNAINNQKETAMDLADKLQYSESALEINEALVEAGAKHGRFIGREDEARAL 307

Query: 102 PRALFSEQH--------------------RDLKEKGEKWMKDTASSCMIVATLIATVVFA 141
            RA+   +H                    ++L++   + +++T +S  +VA L A++ F 
Sbjct: 308 KRAVSDIKHEVQSQLLQNEKTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFASIAFL 367

Query: 142 AALTVPGG---NKEDTGLPFFLHNVSFKIFAVSNVISLVASTLSIVVFLSLVT-PRYAEK 197
           A   +PG         G         F++F + N  SL  S   +VV ++LV     A+K
Sbjct: 368 AIFNLPGQYFTEGSHVGQANIAGRTGFRVFCLLNATSLFISLAVVVVQITLVAWDTRAQK 427

Query: 198 DFLSLLPRKLYVGLGTLFIAIAAMMVVFSATSFIVFTDGSTWIAILV------IVVPSVP 251
             +S++ + ++      F A       F A +F V   G++W+AI +      I+V ++ 
Sbjct: 428 KVVSVVNKLMWAACACTFGA-------FLAIAFAVVGKGNSWMAITITLLGAPILVGTLA 480

Query: 252 AILFFYL--HFRLFDDILRSV 270
           ++ +F     FR  +D  R +
Sbjct: 481 SMCYFVFRQRFRSGNDSQRRI 501

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	316
118488149	354	unknown [Populus trichocarpa]	0.920	0.822	0.534	8e-80
224120494	354	predicted protein [Populus trichocarpa]	0.920	0.822	0.534	2e-79
224120488	610	predicted protein [Populus trichocarpa]	0.920	0.477	0.534	4e-79
224120314	354	predicted protein [Populus trichocarpa]	0.920	0.822	0.520	3e-78
225425076	563	PREDICTED: ankyrin repeat-containing pro	0.895	0.502	0.505	1e-74
297737987	1855	unnamed protein product [Vitis vinifera]	0.857	0.146	0.509	1e-74
147784800	1697	hypothetical protein VITISV_029434 [Viti	0.857	0.159	0.509	2e-74
359472754	789	PREDICTED: ankyrin repeat-containing pro	0.857	0.343	0.509	3e-74
224136692	743	predicted protein [Populus trichocarpa]	0.851	0.362	0.516	1e-73
359473665	602	PREDICTED: LOW QUALITY PROTEIN: ankyrin	0.895	0.470	0.508	3e-73

>gi|118488149|gb|ABK95894.1| unknown [Populus trichocarpa]

 Score =  303 bits (775), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 157/294 (53%), Positives = 205/294 (69%), Gaps = 3/294 (1%)

Query: 1   MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGK-LAP 59
           ++K + N Y+IFHI++ NR  ++FK I    + +I +L+    D EGNN+LHLA K L  
Sbjct: 62  IFKVEHNMYSIFHISILNRHEDIFKIIY--QIGSIKNLITTYKDTEGNNMLHLAAKVLES 119

Query: 60  PDRLNVVSGSALQMQRELLWFQAVKKVVPRKLAEAKNKKGLTPRALFSEQHRDLKEKGEK 119
           P RLN + G+ALQ+QRELLWF+ VKKVV  +  E KN  G TP ALF EQHRDL ++GE+
Sbjct: 120 PSRLNAIPGAALQLQRELLWFEEVKKVVQPRHIEEKNFHGKTPGALFIEQHRDLMKEGEQ 179

Query: 120 WMKDTASSCMIVATLIATVVFAAALTVPGGNKEDTGLPFFLHNVSFKIFAVSNVISLVAS 179
           WM+DTA SCM+VATLIATVVFAAA TVPGGN +D G P FL  ++FK FA+S+ ISLV S
Sbjct: 180 WMRDTADSCMLVATLIATVVFAAAFTVPGGNFQDKGTPVFLKEIAFKFFAISDAISLVTS 239

Query: 180 TLSIVVFLSLVTPRYAEKDFLSLLPRKLYVGLGTLFIAIAAMMVVFSATSFIVFTDGSTW 239
             S++ FLS+ T RYAE++FL  LP +L +GL TLFI+I AMMV F AT F+VF +    
Sbjct: 240 ASSLLTFLSIRTSRYAEQNFLWSLPNRLIIGLTTLFISIGAMMVAFMATFFLVFGNKLLP 299

Query: 240 IAILVIVVPSVPAILFFYLHFRLFDDILRSVFVSDYLIPKCKTSLFYKEGETKV 293
            +I + VV S+P I F + HFRLF D++ S + S  L    K+ LF K+ + KV
Sbjct: 300 YSIPIAVVASLPVIFFIWQHFRLFVDMIHSTYTSRSLFKPNKSPLFSKKLKPKV 353

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120494|ref|XP_002331061.1| predicted protein [Populus trichocarpa] gi|222872991|gb|EEF10122.1| predicted protein [Populus trichocarpa]

 Score =  302 bits (773), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 157/294 (53%), Positives = 204/294 (69%), Gaps = 3/294 (1%)

Query: 1   MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGK-LAP 59
           ++K + N Y+IFHI++ NR  ++FK I    + +I +L+    D EGNN+LHLA K L  
Sbjct: 62  IFKVEHNMYSIFHISILNRHEDIFKIIY--QIGSIKNLITTYKDTEGNNMLHLAAKVLES 119

Query: 60  PDRLNVVSGSALQMQRELLWFQAVKKVVPRKLAEAKNKKGLTPRALFSEQHRDLKEKGEK 119
           P RLN + G+ALQ+QRELLWF+ VKKVV  +  E KN  G TP ALF EQHRDL ++GE+
Sbjct: 120 PSRLNAIPGAALQLQRELLWFEEVKKVVQPRHIEEKNFHGKTPGALFIEQHRDLMKEGEQ 179

Query: 120 WMKDTASSCMIVATLIATVVFAAALTVPGGNKEDTGLPFFLHNVSFKIFAVSNVISLVAS 179
           WM+DTA SCM+VATLIATVVFAAA TVPGGN +D G P FL  ++FK FA+S+ ISLV S
Sbjct: 180 WMRDTADSCMLVATLIATVVFAAAFTVPGGNFQDKGTPVFLKEIAFKFFAISDAISLVTS 239

Query: 180 TLSIVVFLSLVTPRYAEKDFLSLLPRKLYVGLGTLFIAIAAMMVVFSATSFIVFTDGSTW 239
             S++ FLS  T RYAE++FL  LP +L +GL TLFI+I AMMV F AT F+VF +    
Sbjct: 240 ASSLLTFLSTRTSRYAEQNFLWSLPNRLIIGLTTLFISIGAMMVAFMATFFLVFGNKLLP 299

Query: 240 IAILVIVVPSVPAILFFYLHFRLFDDILRSVFVSDYLIPKCKTSLFYKEGETKV 293
            +I + VV S+P I F + HFRLF D++ S + S  L    K+ LF K+ + KV
Sbjct: 300 YSIPIAVVASLPVIFFIWQHFRLFVDMIHSTYTSRSLFKPNKSPLFSKKLKPKV 353

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120488|ref|XP_002331060.1| predicted protein [Populus trichocarpa] gi|222872990|gb|EEF10121.1| predicted protein [Populus trichocarpa]

 Score =  300 bits (769), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 157/294 (53%), Positives = 204/294 (69%), Gaps = 3/294 (1%)

Query: 1   MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGK-LAP 59
           ++K D+N Y+IFHIA+ NR  ++ K I    + +I +++    D EGNN+LHLA K L  
Sbjct: 318 IFKVDQNTYSIFHIAILNRHEDILKMIY--QIGSIKNVMTIYKDREGNNMLHLAAKVLES 375

Query: 60  PDRLNVVSGSALQMQRELLWFQAVKKVVPRKLAEAKNKKGLTPRALFSEQHRDLKEKGEK 119
           P RLN + G+ALQ+QRELLWF+ VKKVV  +  E KN  G TP ALF EQHRDL ++GE+
Sbjct: 376 PSRLNAIPGAALQLQRELLWFEEVKKVVQPRHIEEKNFHGKTPGALFIEQHRDLMKEGEQ 435

Query: 120 WMKDTASSCMIVATLIATVVFAAALTVPGGNKEDTGLPFFLHNVSFKIFAVSNVISLVAS 179
           WM+DTA SCM+VATLIATVVFAAA TVPGGN +D G P FL  ++FK FA+S+ ISLV S
Sbjct: 436 WMRDTADSCMLVATLIATVVFAAAFTVPGGNFQDKGTPVFLKEIAFKFFAISDAISLVTS 495

Query: 180 TLSIVVFLSLVTPRYAEKDFLSLLPRKLYVGLGTLFIAIAAMMVVFSATSFIVFTDGSTW 239
             S++ FLS  T RYAE++FL  LP +L +GL TLFI+I AMMV F AT F+VF +    
Sbjct: 496 ASSLLTFLSTRTSRYAEQNFLWSLPNRLIIGLTTLFISIGAMMVAFMATFFLVFGNKLLP 555

Query: 240 IAILVIVVPSVPAILFFYLHFRLFDDILRSVFVSDYLIPKCKTSLFYKEGETKV 293
            +I + VV S+P I F + HFRLF D++ S + S  L    K+ LF K+ + KV
Sbjct: 556 YSIPIAVVASLPVIFFIWQHFRLFVDMIHSTYTSRSLFKPNKSPLFSKKLKPKV 609

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120314|ref|XP_002331017.1| predicted protein [Populus trichocarpa] gi|222872947|gb|EEF10078.1| predicted protein [Populus trichocarpa]

 Score =  298 bits (762), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 153/294 (52%), Positives = 202/294 (68%), Gaps = 3/294 (1%)

Query: 1   MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGK-LAP 59
           ++K D+N Y+IFHIA+ NR  ++ K I    + +I +++    D EGNN+LHLA K L  
Sbjct: 62  IFKVDQNTYSIFHIAILNRHEDILKMIY--QIGSIKNVMTIYKDREGNNMLHLAAKVLES 119

Query: 60  PDRLNVVSGSALQMQRELLWFQAVKKVVPRKLAEAKNKKGLTPRALFSEQHRDLKEKGEK 119
           P RLNV+ G+ALQ+QRELLWF+ VKKVV  +  E KN  G TP ALF EQH+DL ++GE+
Sbjct: 120 PSRLNVIPGAALQLQRELLWFEEVKKVVQPRHIEEKNIHGKTPGALFIEQHKDLMKEGEQ 179

Query: 120 WMKDTASSCMIVATLIATVVFAAALTVPGGNKEDTGLPFFLHNVSFKIFAVSNVISLVAS 179
           WM+DTA SCM+VATLIATVVFAAA T+PGGN +D G P FL   +FK F +S+ ISLV S
Sbjct: 180 WMRDTADSCMLVATLIATVVFAAAFTLPGGNIQDKGTPVFLEKPAFKFFVISDAISLVTS 239

Query: 180 TLSIVVFLSLVTPRYAEKDFLSLLPRKLYVGLGTLFIAIAAMMVVFSATSFIVFTDGSTW 239
             S++ FLS+ T RYAE++FL  LP +L +GL TLFI+I AMM  F A  F+VF D    
Sbjct: 240 ASSLITFLSIRTSRYAEQNFLWSLPNRLIIGLTTLFISIGAMMGAFVAAFFLVFKDKLQQ 299

Query: 240 IAILVIVVPSVPAILFFYLHFRLFDDILRSVFVSDYLIPKCKTSLFYKEGETKV 293
            +I ++VV S+P I F + H+RLF D++ S + S  L    K+ LF K  + KV
Sbjct: 300 FSIPIVVVASLPVIFFIWQHYRLFLDMIHSTYTSRSLFKPNKSPLFSKRVKPKV 353

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425076|ref|XP_002271486.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  286 bits (731), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 144/285 (50%), Positives = 196/285 (68%), Gaps = 2/285 (0%)

Query: 1   MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPP 60
           +W+ D +  TIFHIAV +R+  +F  I   ++ ++ DL+V   D   NN+LHLAG+ AP 
Sbjct: 281 IWEADNDNRTIFHIAVLHRRESIFNLIY--EIGSMKDLIVPYKDDNDNNMLHLAGRKAPL 338

Query: 61  DRLNVVSGSALQMQRELLWFQAVKKVVPRKLAEAKNKKGLTPRALFSEQHRDLKEKGEKW 120
            + N+VSG+ALQMQRELLWF+ V+K++     E KNK G TPR LF+++H++L + GEKW
Sbjct: 339 PQRNIVSGAALQMQRELLWFKEVEKIMLPTYRERKNKDGKTPRDLFTKEHKNLMKDGEKW 398

Query: 121 MKDTASSCMIVATLIATVVFAAALTVPGGNKEDTGLPFFLHNVSFKIFAVSNVISLVAST 180
           M+ TA+  M+VATLIATVVFAAA TVPGG+ +DTG+P  L   SF IFAVS+ I+L +S+
Sbjct: 399 MRGTAAQSMLVATLIATVVFAAAFTVPGGSNQDTGIPILLRKKSFMIFAVSDAIALFSSS 458

Query: 181 LSIVVFLSLVTPRYAEKDFLSLLPRKLYVGLGTLFIAIAAMMVVFSATSFIVFTDGSTWI 240
            SI+VFLS++T RYAE DFL  LP +L  GL TLF++I +MMV F+ T F+VF  G  W 
Sbjct: 459 TSILVFLSILTSRYAEDDFLESLPSRLMFGLITLFVSIISMMVTFTITFFLVFGHGFAWA 518

Query: 241 AILVIVVPSVPAILFFYLHFRLFDDILRSVFVSDYLIPKCKTSLF 285
            +L+ V   VP  L+F L + L  DI RS + S +L    K  L+
Sbjct: 519 PMLIAVSACVPVTLYFSLQYPLLADIFRSTYGSRFLFRPSKRMLY 563

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737987|emb|CBI27188.3| unnamed protein product [Vitis vinifera]

 Score =  286 bits (731), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 139/273 (50%), Positives = 193/273 (70%), Gaps = 2/273 (0%)

Query: 1   MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPP 60
           +WK ++   TIFH+AV++RQ ++F  I   ++ A  D +    D + NN+LHLAGKLAP 
Sbjct: 419 IWKVNDQSQTIFHVAVAHRQEKIFNLIY--EIGAHKDYIAAYKDEKNNNMLHLAGKLAPS 476

Query: 61  DRLNVVSGSALQMQRELLWFQAVKKVVPRKLAEAKNKKGLTPRALFSEQHRDLKEKGEKW 120
           +RL + SG+A Q+QREL WF+ V+K++     E KN++G TP+ LF+E+H+DL  +GEKW
Sbjct: 477 NRLKIDSGAAFQLQRELHWFKEVEKIIQPSYTEMKNEQGRTPQILFTEEHKDLVREGEKW 536

Query: 121 MKDTASSCMIVATLIATVVFAAALTVPGGNKEDTGLPFFLHNVSFKIFAVSNVISLVAST 180
           MKDTASSCM+VATLIATV+FAAA +VPGGN +DTG P FL   SF +FA+S+ ++L +S 
Sbjct: 537 MKDTASSCMVVATLIATVMFAAAFSVPGGNDDDTGRPIFLTKKSFLVFAISDALALFSSA 596

Query: 181 LSIVVFLSLVTPRYAEKDFLSLLPRKLYVGLGTLFIAIAAMMVVFSATSFIVFTDGSTWI 240
            SI++FLS++T RYAE+DFL  LP +L +GL TLFI++A MM+ F AT FIV      W+
Sbjct: 597 TSILIFLSILTSRYAEEDFLESLPNRLIIGLATLFISVATMMIAFCATLFIVLGPELVWV 656

Query: 241 AILVIVVPSVPAILFFYLHFRLFDDILRSVFVS 273
           A  + +V  VP  LF  L F LF D++   + S
Sbjct: 657 ANPMALVACVPVTLFPLLKFPLFIDMISHRYRS 689

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147784800|emb|CAN68568.1| hypothetical protein VITISV_029434 [Vitis vinifera]

 Score =  285 bits (729), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 139/273 (50%), Positives = 193/273 (70%), Gaps = 2/273 (0%)

Query: 1   MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPP 60
           +WK ++   TIFH+AV++RQ ++F  I   ++ A  D +    D + NN+LHLAGKLAP 
Sbjct: 484 IWKVNDQSQTIFHVAVAHRQEKIFNLIY--EIGAHKDYIAAYKDEKNNNMLHLAGKLAPS 541

Query: 61  DRLNVVSGSALQMQRELLWFQAVKKVVPRKLAEAKNKKGLTPRALFSEQHRDLKEKGEKW 120
           +RL + SG+A Q+QREL WF+ V+K++     E KN++G TP+ LF+E+H+DL  +GEKW
Sbjct: 542 NRLKIDSGAAFQLQRELHWFKEVEKIIQPSYTEMKNEQGRTPQILFTEEHKDLVREGEKW 601

Query: 121 MKDTASSCMIVATLIATVVFAAALTVPGGNKEDTGLPFFLHNVSFKIFAVSNVISLVAST 180
           MKDTASSCM+VATLIATV+FAAA +VPGGN +DTG P FL   SF +FA+S+ ++L +S 
Sbjct: 602 MKDTASSCMVVATLIATVMFAAAFSVPGGNDDDTGRPIFLTKKSFLVFAISDALALFSSA 661

Query: 181 LSIVVFLSLVTPRYAEKDFLSLLPRKLYVGLGTLFIAIAAMMVVFSATSFIVFTDGSTWI 240
            SI++FLS++T RYAE+DFL  LP +L +GL TLFI++A MM+ F AT FIV      W+
Sbjct: 662 TSILIFLSILTSRYAEEDFLESLPNRLIIGLATLFISVATMMIAFCATLFIVLGPELVWV 721

Query: 241 AILVIVVPSVPAILFFYLHFRLFDDILRSVFVS 273
           A  + +V  VP  LF  L F LF D++   + S
Sbjct: 722 ANPMALVACVPVTLFPLLKFPLFIDMISHRYRS 754

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359472754|ref|XP_002276402.2| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  284 bits (727), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 139/273 (50%), Positives = 193/273 (70%), Gaps = 2/273 (0%)

Query: 1   MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPP 60
           +WK ++   TIFH+AV++RQ ++F  I   ++ A  D +    D + NN+LHLAGKLAP 
Sbjct: 445 IWKVNDQSQTIFHVAVAHRQEKIFNLIY--EIGAHKDYIAAYKDEKNNNMLHLAGKLAPS 502

Query: 61  DRLNVVSGSALQMQRELLWFQAVKKVVPRKLAEAKNKKGLTPRALFSEQHRDLKEKGEKW 120
           +RL + SG+A Q+QREL WF+ V+K++     E KN++G TP+ LF+E+H+DL  +GEKW
Sbjct: 503 NRLKIDSGAAFQLQRELHWFKEVEKIIQPSYTEMKNEQGRTPQILFTEEHKDLVREGEKW 562

Query: 121 MKDTASSCMIVATLIATVVFAAALTVPGGNKEDTGLPFFLHNVSFKIFAVSNVISLVAST 180
           MKDTASSCM+VATLIATV+FAAA +VPGGN +DTG P FL   SF +FA+S+ ++L +S 
Sbjct: 563 MKDTASSCMVVATLIATVMFAAAFSVPGGNDDDTGRPIFLTKKSFLVFAISDALALFSSA 622

Query: 181 LSIVVFLSLVTPRYAEKDFLSLLPRKLYVGLGTLFIAIAAMMVVFSATSFIVFTDGSTWI 240
            SI++FLS++T RYAE+DFL  LP +L +GL TLFI++A MM+ F AT FIV      W+
Sbjct: 623 TSILIFLSILTSRYAEEDFLESLPNRLIIGLATLFISVATMMIAFCATLFIVLGPELVWV 682

Query: 241 AILVIVVPSVPAILFFYLHFRLFDDILRSVFVS 273
           A  + +V  VP  LF  L F LF D++   + S
Sbjct: 683 ANPMALVACVPVTLFPLLKFPLFIDMISHRYRS 715

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136692|ref|XP_002322392.1| predicted protein [Populus trichocarpa] gi|222869388|gb|EEF06519.1| predicted protein [Populus trichocarpa]

 Score =  282 bits (722), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 140/271 (51%), Positives = 191/271 (70%), Gaps = 2/271 (0%)

Query: 1   MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPP 60
           +WK +E   +IFHIAV++RQ ++F  I+  D+ A  D++    D    NILHLAG +AP 
Sbjct: 461 IWKVNEQSRSIFHIAVAHRQEKIFSLIN--DIGAHKDMITAYKDINNANILHLAGMIAPR 518

Query: 61  DRLNVVSGSALQMQRELLWFQAVKKVVPRKLAEAKNKKGLTPRALFSEQHRDLKEKGEKW 120
           D+LNV+SG+ALQMQRELLWF+ V+K V   L E ++K G TPR LF+E+HR L ++GEKW
Sbjct: 519 DKLNVISGAALQMQRELLWFKEVEKNVQPSLKEMRDKNGRTPRMLFTEEHRGLVKEGEKW 578

Query: 121 MKDTASSCMIVATLIATVVFAAALTVPGGNKEDTGLPFFLHNVSFKIFAVSNVISLVAST 180
           MK+TASSCM++ATLI TV+FAA  TVPGGN    G P  L + SF +FAV++  +L +S 
Sbjct: 579 MKNTASSCMLLATLITTVMFAAIFTVPGGNDNSKGTPLVLASTSFIVFAVADAFALFSSV 638

Query: 181 LSIVVFLSLVTPRYAEKDFLSLLPRKLYVGLGTLFIAIAAMMVVFSATSFIVFTDGSTWI 240
            SI++FLS++T RYAE+DF+  LP++L VGL TLF +IAAM+V F+AT  IV      WI
Sbjct: 639 TSILMFLSILTSRYAEEDFVESLPKRLVVGLATLFCSIAAMLVAFAATFCIVLDHRLAWI 698

Query: 241 AILVIVVPSVPAILFFYLHFRLFDDILRSVF 271
            + + +  SVP  LF +L F LF D++ S +
Sbjct: 699 VVPISLGSSVPVTLFAFLQFPLFVDMIHSSY 729

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473665|ref|XP_003631341.1| PREDICTED: LOW QUALITY PROTEIN: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  281 bits (719), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 146/287 (50%), Positives = 202/287 (70%), Gaps = 4/287 (1%)

Query: 1   MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPP 60
           +W+ D++  +IFHIAV +RQ  +F  I   ++ ++ DL+V + D   NNILHLAG+LAPP
Sbjct: 319 IWEVDDHNRSIFHIAVLHRQENIFNLIY--EIGSMKDLIVPNKDENDNNILHLAGRLAPP 376

Query: 61  DRLNVVSGSALQMQRELLWFQAVKKVVPRKLAEAKNKKGLTPRALFSEQHRDLKEKGEKW 120
            + N+V G+ALQMQRELLWF+ V+K+V     E KN+ G TP  LF+++H+DL ++GEKW
Sbjct: 377 RQRNIVVGAALQMQRELLWFREVEKMVLPSFRERKNRDGETPWDLFTKEHKDLMKEGEKW 436

Query: 121 MKDTASSCMIVATLIATVVFAAALTVPGGNKEDTGLPFFLHNVSFKIFAVSNVISLVAST 180
           M+ TA+  M+VATLIATVVFAAALTVPGG+ +DTG+P F+      IFAVS+ I+L  S 
Sbjct: 437 MRGTAAQSMLVATLIATVVFAAALTVPGGSNQDTGIPXFVEKEILHIFAVSDAIALFTSL 496

Query: 181 LSIVVFLSLV-TPRYAEKDFLSLLPRKLYVGLGTLFIAIAAMMVVFSATSFIVFTDGSTW 239
            SI+VFLS+V T RYA+ DFL LLP +L  GL TLFI+I +MMV F+AT F++F+ G TW
Sbjct: 497 TSILVFLSIVLTSRYADDDFLELLPSRLMFGLFTLFISIISMMVTFTATFFLLFSHGVTW 556

Query: 240 IAILVIVVPSVPAILFFYLHFRLFDDILRSVFVSDYLIPKCKTSLFY 286
             ILV V   +   L+F +  RL+  I+R+ + S  LI + +  + Y
Sbjct: 557 APILVAVFAFLLVTLYFSMQCRLWAHIIRATYCS-RLIFRPRKHMLY 602

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	316
TAIR|locus:2165174	347	AT5G35810 "AT5G35810" [Arabido	0.895	0.815	0.443	1.4e-62
TAIR|locus:2080240	574	AT3G54070 "AT3G54070" [Arabido	0.867	0.477	0.434	4e-58
TAIR|locus:2175413	669	AT5G04700 "AT5G04700" [Arabido	0.819	0.387	0.428	2.7e-52
TAIR|locus:2180228	625	AT5G04690 "AT5G04690" [Arabido	0.813	0.411	0.424	7.4e-50
TAIR|locus:2175448	603	AT5G04730 "AT5G04730" [Arabido	0.813	0.426	0.393	6.9e-47
TAIR|locus:2046628	601	AT2G24600 "AT2G24600" [Arabido	0.496	0.261	0.303	3.8e-11
TAIR|locus:2170081	535	AT5G50140 "AT5G50140" [Arabido	0.518	0.306	0.258	4.3e-11
TAIR|locus:2092522	590	ITN1 "INCREASED TOLERANCE TO N	0.417	0.223	0.347	1.3e-10
TAIR|locus:2157553	598	AT5G54710 "AT5G54710" [Arabido	0.468	0.247	0.283	2.5e-10
TAIR|locus:2020833	616	AT1G03670 "AT1G03670" [Arabido	0.731	0.375	0.266	3.6e-10

TAIR|locus:2165174 AT5G35810 "AT5G35810" [Arabidopsis thaliana (taxid:3702)]

 Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
 Identities = 129/291 (44%), Positives = 195/291 (67%)

Query:     1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGN-NILHLAGKLAP 59
             +W  D    ++FHIA  NR  ++F  I   ++ AI DL+    + E N N+LHL  +L P
Sbjct:    58 IWTVDHKNQSLFHIAAINRHEKIFNRIY--ELGAIKDLIAMYKEKESNDNLLHLVARLPP 115

Query:    60 PDRLNVVSGSALQMQRELLWFQAVKKVVPRKLAEAKNKKGLTPRALFSEQHRDLKEKGEK 119
             P+RL VVSG+ALQMQRE+LW++AVK++VPR   + KNKK      LF+++H +L+++GEK
Sbjct:   116 PNRLQVVSGAALQMQREILWYKAVKEIVPRVYIKTKNKKEEVAHDLFTKEHDNLRKEGEK 175

Query:   120 WMKDTASSCMIVATLIATVVFAAALTVPGGNK-----EDTGLPFFLHNVSFKIFAVSNVI 174
             WMK+TA++C++V+TLIATVVFAAA T+PGGN      +  G P F     F++F +S+ +
Sbjct:   176 WMKETATACILVSTLIATVVFAAAFTLPGGNDTSGDIKTLGFPTFRKEFWFEVFIISDSV 235

Query:   175 SLVASTLSIVVFLSLVTPRYAEKDFLSLLPRKLYVGLGTLFIAIAAMMVVFSATSFIVFT 234
             +L++S  SI++FLS++T RYAE  F + LP KL +GL  LF++I +M++ F+AT  ++  
Sbjct:   236 ALLSSVTSIMIFLSILTSRYAEASFQTTLPTKLMLGLLALFVSIISMVLAFTATLILIRD 295

Query:   235 DGSTWIAILVIVVPSVPAILFFYLHFRLFDDILRSVFVSDYLIPKCKTSLF 285
                 W  IL++ V S  A+ F  LHF+L+ D LRS ++S +L    K+ L+
Sbjct:   296 QEPKWSLILLVYVASATALSFVVLHFQLWFDTLRSAYLSKFLFHGRKSGLY 346

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2080240 AT3G54070 "AT3G54070" [Arabidopsis thaliana (taxid:3702)]

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 123/283 (43%), Positives = 187/283 (66%)

Query:     1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNN-ILHLAGKLAP 59
             +W  D N  T+FH+A   R   +F  I   ++  I DL+    + +  + +LHL  +L P
Sbjct:   282 LWIVDNNNRTLFHVAALYRHENIFSLIY--ELGGIKDLIASYKEKQSKDTLLHLVARLPP 339

Query:    60 PDRLNVVSGSALQMQRELLWFQAVKKVVPRKLAEAKNKKGLTPRALFSEQHRDLKEKGEK 119
              +R  V SG+AL MQ+ELLWF+AVK++VPR   E KN KG     +F+EQH +L+++GE+
Sbjct:   340 MNRQQVGSGAALHMQKELLWFKAVKEIVPRSYIETKNTKGELAHDIFTEQHENLRKEGER 399

Query:   120 WMKDTASSCMIVATLIATVVFAAALTVPGGN-----KEDT-GLPFFLHNVSFKIFAVSNV 173
             WMK+TA++CM+ ATLIATVVFAAA+T+PGGN     K +T G P F   + F IF +S+ 
Sbjct:   400 WMKETATACMLGATLIATVVFAAAITIPGGNDDSGDKANTLGFPNFRKRLLFDIFTLSDS 459

Query:   174 ISLVASTLSIVVFLSLVTPRYAEKDFLSLLPRKLYVGLGTLFIAIAAMMVVFSATSFIVF 233
             ++L +S +SIV+FLS+ T RYAE+DF   LP KL  GL  LFI+I +M++ F+ +  ++ 
Sbjct:   460 VALFSSMMSIVIFLSIFTSRYAEEDFRYDLPTKLMFGLSALFISIISMILAFTFSMILIR 519

Query:   234 TDGSTWIAILVIVVPSVPAILFFYLHFRLFDDILRSVFVSDYL 276
              + ++   +L+  + S+ A+ F YL+F L+ + LRSV++S +L
Sbjct:   520 VEKASLSLVLISCLASLTALTFAYLYFHLWFNTLRSVYISMFL 562

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2175413 AT5G04700 "AT5G04700" [Arabidopsis thaliana (taxid:3702)]

 Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
 Identities = 113/264 (42%), Positives = 167/264 (63%)

Query:    10 TIFHIAVSNRQVELFKFI-DADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSG 68
             T+F +AV  RQ ++F  +   DD K +  LL D  D +GN +LHLAG  +PP +L+ V G
Sbjct:   396 TLFLLAVEFRQEKVFSLLYGLDDRKYL--LLADK-DCDGNGVLHLAGFPSPPSKLSSVVG 452

Query:    69 SALQMQRELLWFQAVKKVVPRKLAEAKNKKGLTPRALFSEQHRDLKEKGEKWMKDTASSC 128
             + LQ+QREL WF+ V+++ P    E  N +  TP  +F+++H+ L+++ EKWMKDTA SC
Sbjct:   453 APLQLQRELQWFKEVERIAPEIEKERVNTEEQTPIEIFTKEHQGLRQEAEKWMKDTAMSC 512

Query:   129 MIVATLIATVVFAAALTVPGGNKEDT-GLPFFLHNVSFKIFAVSNVISLVASTLSIVVFL 187
              +VA LI TV FAA  TVPGG  +++ G PF L +  F IF VS++IS  AS  S+++FL
Sbjct:   513 SLVAALIVTVTFAAVFTVPGGTDDNSKGKPFHLRDRRFIIFIVSDLISCFASCTSVLIFL 572

Query:   188 SLVTPRYAEKDFLSLLPRKLYVGLGTLFIAIAAMMVVFSATSFIVFTDGSTWIAILVIVV 247
              ++T RY+  DFL  LP K+  GL  LF++IAAM++ FS+  F +      WI    I+ 
Sbjct:   573 GILTARYSFDDFLVFLPTKMIAGLSILFVSIAAMLIAFSSALFTMMGKEGKWIVAPTILF 632

Query:   248 PSVPAILFFYLHFRLFDDILRSVF 271
               +PA+LF  L + L  +++ S +
Sbjct:   633 ACLPALLFVLLQYPLLKEMIFSTY 656

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2180228 AT5G04690 "AT5G04690" [Arabidopsis thaliana (taxid:3702)]

 Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
 Identities = 112/264 (42%), Positives = 160/264 (60%)

Query:    10 TIFHIAVSNRQVELFKFI-DADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSG 68
             T+F+ AV  RQ ++F  +    D K +   L D  D +GN++LHLAG   P  +L  V  
Sbjct:   354 TLFNTAVQVRQEKVFSLLYGLGDRKYL--FLADK-DSDGNSVLHLAGYPPPNYKLATVVS 410

Query:    69 SALQMQRELLWFQAVKKVVPRKLAEAKNKKGLTPRALFSEQHRDLKEKGEKWMKDTASSC 128
             + LQMQREL WF+ ++++VP    E  N + LTP  +F ++H  ++ + EKWMKDTA SC
Sbjct:   411 ATLQMQRELQWFKEMERIVPAIENERVNTENLTPIEIFRKEHEAMRLEAEKWMKDTAMSC 470

Query:   129 MIVATLIATVVFAAALTVPGGNKEDTG-LPFFLHNVSFKIFAVSNVISLVASTLSIVVFL 187
              +VA LI TV FAA  TVPGG  +++G  PF  H   F IF VS++IS  A+  S+++FL
Sbjct:   471 SLVAALIVTVTFAAIFTVPGGTDDNSGGRPFHRHERIFVIFIVSDLISCFAACTSVLIFL 530

Query:   188 SLVTPRYAEKDFLSLLPRKLYVGLGTLFIAIAAMMVVFSATSFIVFTDGSTWIAILVIVV 247
              ++T RYA  DFL  LP  +  GL TLF++IAAM+V FS+  F +F D   WI    I  
Sbjct:   531 GILTARYAFDDFLFSLPANMIAGLSTLFVSIAAMLVAFSSALFTIFND--PWIVAPTIFF 588

Query:   248 PSVPAILFFYLHFRLFDDILRSVF 271
                PA+LF  + + L  +++ S +
Sbjct:   589 ACFPALLFVMIQYPLLKELIFSTY 612

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2175448 AT5G04730 "AT5G04730" [Arabidopsis thaliana (taxid:3702)]

 Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
 Identities = 103/262 (39%), Positives = 161/262 (61%)

Query:    11 IFHIAVSNRQVELFKFIDA-DDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGS 69
             +F +AV  ++ ++F  I   DD K     L+ S D   NNILH+AG+L+ PD+L+ +SG+
Sbjct:   332 LFQLAVEFKKEKIFNLIHGLDDRKVT---LLRSYDKGNNNILHIAGRLSTPDQLSKISGA 388

Query:    70 ALQMQRELLWFQAVKKVVPRKLAEAKNKKGLTPRALFSEQHRDLKEKGEKWMKDTASSCM 129
             AL+MQRE  WF+ V+ +V  +    KNK   TPR +F   H  L+++GE+WMK TA++C 
Sbjct:   389 ALKMQRESQWFKEVESLVSEREVVQKNKDNKTPRQIFEHYHEHLRKEGEEWMKYTATACS 448

Query:   130 IVATLIATVVFAAALTVPGGNKEDTGLPFFLHNVSFKIFAVSNVISLVASTLSIVVFLSL 189
              VA LIATV F A  TVPGG    +G P  L+++ F+ F  ++ ++  AS +S+++FLS+
Sbjct:   449 FVAALIATVTFQAIFTVPGGIDGTSGSPLILNDLHFRAFIFTDTLAFFASCISVLIFLSI 508

Query:   190 VTPRYAEKDFLSLLPRKLYVGLGTLFIAIAAMMVVFSATSFIVFTDGSTWIAILVIVVPS 249
             +T RY+  DF+  LPRK+ +G   LFI+IA+M+V F  TS          +   +  + S
Sbjct:   509 LTSRYSFDDFIVSLPRKMILGQSILFISIASMLVAF-ITSLSASMRHKPALVYPLKPLAS 567

Query:   250 VPAILFFYLHFRLFDDILRSVF 271
              P++LF  L + L  +++ S +
Sbjct:   568 FPSLLFLMLQYPLLKEMISSTY 589

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2046628 AT2G24600 "AT2G24600" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 3.8e-11, Sum P(2) = 3.8e-11
 Identities = 54/178 (30%), Positives = 87/178 (48%)

Query:    90 KLAEAK-NKKGLTPRALFSEQHRDLKEKGEKWMKDTASSCMIVATLIATVVFAAALTVPG 148
             ++AE K +KK    R   S +H    E   + +++  ++  IVA LIA+V +A  +  PG
Sbjct:   373 EIAERKKSKKHHVKRGHKSLEH----EMHIEALQNARNTIAIVAVLIASVSYAGGINPPG 428

Query:   149 GNKED---TGLPFFLHNVSFKIFAVSNVISLVASTLSIVVFLSLVTPRYAEKDFLSLLP- 204
             G  +D    G     +  +FK+FA+ N I+L  S L IV+ L  + P Y  K    LL  
Sbjct:   429 GVYQDGPWKGKSLVGNTAAFKVFAICNNIALFTS-LCIVILLVSIIP-YQRKPLKKLLVA 486

Query:   205 --RKLYVGLGTLFIA-IAAMMVVFSATSFIVFTDGSTWI-AILVIVVPSVPAILFFYL 258
               R ++V +G +  A +AA +V       I    G+ W+  +++ V      +LF YL
Sbjct:   487 THRMMWVSVGFMATAYVAASLVT------IPHFPGTRWLFPVIISVAGGSLTVLFSYL 538

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2170081 AT5G50140 "AT5G50140" [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
 Identities = 45/174 (25%), Positives = 89/174 (51%)

Query:   114 KEKGEKWMKDTASSCMIVATLIATVVFAAALTVPGGNKED---TGLPFFLHNVSFKIFAV 170
             KE   + +++  ++  +VA LIA+V F   L  PGG  +D    G       V+FK+F+V
Sbjct:   353 KEMQSEALQNARNTITVVAVLIASVTFTCGLNPPGGVYQDGHFIGKATAGGTVAFKVFSV 412

Query:   171 SNVISLVASTLSIVVFLSLVTPRYAE-KDFLSLLPRKLYVGLGTLFIAIAAMMVVFSATS 229
             SN I+L  S   +++ LS++  R    K FL +  + +++ +    IA+A+  V  +  +
Sbjct:   413 SNSIALFTSLCIVILLLSIIPFRTKSLKTFLIITHKMIWLAV----IAMASAYVAGTCVT 468

Query:   230 FIVFTDGSTWIAILVIVVPSVP-AILFFYLHFRLFDDILRSVFVSDYLIPKCKT 282
              +  + G+ W+    +V+  V    +F +L F+L + + R   +   ++ + +T
Sbjct:   469 -LPHSRGNKWVLKATLVIACVMLGGMFIFLWFKLANHMSRKKKMRKNMMSRIET 521

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2092522 ITN1 "INCREASED TOLERANCE TO NACL" [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
 Identities = 49/141 (34%), Positives = 75/141 (53%)

Query:   111 RDLKEKGEKWMKDTASSCMIVATLIATVVFAAALTVPGGNKEDTGLPFFLHNVSFKIFAV 170
             ++L++   + + +  +S  +VA L ATV FAA  TVPGG+  D G    +   SFKIF +
Sbjct:   405 KELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDNND-GSAVVVGRASFKIFFI 463

Query:   171 SNVISLVASTLSIVVFLSLVTPRY-AEKDFLSLLPRKLYVGLGTLFIAIAAMMVVFSATS 229
              N ++L  S   +VV ++LV     AEK  + ++  KL      +++A     V F A+S
Sbjct:   464 FNALALFTSLAVVVVQITLVRGETKAEKRVVEVI-NKL------MWLASMCTSVAFLASS 516

Query:   230 FIVFTDGSTWIAILVIVVPSV 250
             +IV    + W A LV VV  V
Sbjct:   517 YIVVGRKNEWAAELVTVVGGV 537

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IPI

GO:0034613 "cellular protein localization" evidence=IDA

TAIR|locus:2157553 AT5G54710 "AT5G54710" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
 Identities = 46/162 (28%), Positives = 84/162 (51%)

Query:   114 KEKGEKWMKDTASSCMIVATLIATVVFAAALTVPGGNKED---TGLPFFLHNVSFKIFAV 170
             +E   + +++  ++  IVA LIA+V F   +  PGG  +D    G       ++FKIF+V
Sbjct:   413 REMHSESLQNARNTITIVAVLIASVAFTCGINPPGGVHQDGPFIGKATAGRTLAFKIFSV 472

Query:   171 SNVISLVASTLSIVVFL-SLVTPRYAEKDFLSLLPRKLYVGLGTLFIAIAAMMVVFSATS 229
             +N I+L  S LSIV  L S+++ R        ++  K+      +++A+A+M   ++A++
Sbjct:   473 ANNIALFTS-LSIVTLLVSIISYRTKALKMCVVIAHKM------MWLAVASMATAYAASA 525

Query:   230 FIVF--TDGSTWIAILVIVVPSVP-AILFFYLHFRLFDDILR 268
             +I     +GS W+      + SV    +F Y+ F +   IL+
Sbjct:   526 WITVPHNEGSKWLVYTTSAIASVALGSMFVYVSFMMVKHILK 567

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2020833 AT1G03670 "AT1G03670" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 3.6e-10, P = 3.6e-10
 Identities = 72/270 (26%), Positives = 132/270 (48%)

Query:    11 IFHIAVSNRQVELFKFI-DADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVS-- 67
             IFH+A    + ++ K++   D+ K     +++  D  GN  LHLA K   P  +N+++  
Sbjct:   324 IFHVAAIAGKSKVVKYLLKLDEGKR----MMNEQDINGNTPLHLATKHRYPIVVNMLTWN 379

Query:    68 -G-----------SALQMQRELLWFQAV---KKVVPRKLAEAKNKKGLTPRALFSEQHRD 112
              G           +AL +   +    A    K+++   L  A    G  P  +     + 
Sbjct:   380 DGINLRALNNEGFTALDIAETMKDNNAYVLYKRLIWMALVSAGAPHG--PNLIPLTVSQS 437

Query:   113 LKEKGEKWMKDTASSCMIVATLIATVVFAAALTVPGGNKEDT---GLPFFLHNVSFKIFA 169
              K+  E++ KD+ ++ M+ ATL+ATV FAA LT+PGG        G+   ++ ++FK+F 
Sbjct:   438 SKQSPERY-KDSVNTLMVTATLVATVTFAAGLTLPGGYMSSAPHLGMAALVNKLNFKVFL 496

Query:   170 VSNVISLVASTLSIVVFLSLVTPRYAEKDFLSLLPRKLY-VGLGTLFIAIAAMMVVFSAT 228
             + N I++  S   +V  ++L+  +  +    +LL +K + + L  L  A+ +MM+   A 
Sbjct:   497 LLNNIAMCTS---VVTVMALIWAQLGD----ALLTKKAFRLALPLLLTAVVSMMMASVAG 549

Query:   229 SFIVFTDGSTWIAILVIVVPSVPAILFFYL 258
               +V +D   W++ LV+ + S  A L F +
Sbjct:   550 LTLVVSD-LPWLSHLVLAIDS--AFLVFLM 576

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0152005601 SubName- Full=Putative uncharacterized protein; (354 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	316
pfam13962	114	pfam13962, PGG, Domain of unknown function	8e-29
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	0.001
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	0.001

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score =  106 bits (268), Expect = 8e-29
 Identities = 46/121 (38%), Positives = 68/121 (56%), Gaps = 13/121 (10%)

Query: 118 EKWMKDTASSCMIVATLIATVVFAAALTVPGGNKEDT-----GLPFFLHN-VSFKIFAVS 171
            +W++ T +S ++VATLIATV FAA  T PGG  +D      G P        FK F VS
Sbjct: 1   SEWLEKTRNSLLVVATLIATVTFAAGFTPPGGYWQDDGGHHAGTPILAGKPRRFKAFFVS 60

Query: 172 NVISLVASTLSIVVFLSLVTPRYAEKDFLSLLPRKLYVGLGTLFIAIAAMMVVFSATSFI 231
           N I+ VAS +++++ L +V        F   LPR L   L  L++++ ++MV F+A S+ 
Sbjct: 61  NTIAFVASLVAVILLLYIV------PSFSRRLPR-LLALLTLLWLSLLSLMVAFAAGSYR 113

Query: 232 V 232
           V
Sbjct: 114 V 114

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 6/51 (11%)

Query: 4  CDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLA 54
           DE+  T  H+A SN  +E+ K +    ++  AD  V++ D +G   LHLA
Sbjct: 3  RDEDGRTPLHLAASNGHLEVVKLL----LENGAD--VNAKDNDGRTPLHLA 47

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 25/99 (25%)

Query: 4   CDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRL 63
            D +  T  H+A  N  +E+ K +    ++  AD  V++ D +GN  LHLA         
Sbjct: 36  KDNDGRTPLHLAAKNGHLEIVKLL----LEKGAD--VNARDKDGNTPLHLA--------- 80

Query: 64  NVVSGSALQMQRELLWFQAVKKVVPRKLAEAKNKKGLTP 102
                  L + + LL   A           A++K G TP
Sbjct: 81  --ARNGNLDVVKLLLKHGADV--------NARDKDGRTP 109

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	316
PF13962	113	PGG: Domain of unknown function	99.92
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.51
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.43
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.27
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.24
PHA02741	169	hypothetical protein; Provisional	99.22
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.2
PHA02743	166	Viral ankyrin protein; Provisional	99.17
PHA02736	154	Viral ankyrin protein; Provisional	99.1
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.08
PHA02859	209	ankyrin repeat protein; Provisional	99.07
PHA02741	169	hypothetical protein; Provisional	99.06
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.05
PHA02874	434	ankyrin repeat protein; Provisional	99.05
PHA02946	446	ankyin-like protein; Provisional	99.04
PHA02791	284	ankyrin-like protein; Provisional	99.04
PHA02874	434	ankyrin repeat protein; Provisional	99.0
PHA02878	477	ankyrin repeat protein; Provisional	99.0
PHA02878	477	ankyrin repeat protein; Provisional	98.98
PHA02884	300	ankyrin repeat protein; Provisional	98.97
KOG0510	929	consensus Ankyrin repeat protein [General function	98.97
PHA02791	284	ankyrin-like protein; Provisional	98.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	98.97
PHA02946	446	ankyin-like protein; Provisional	98.96
KOG0510	929	consensus Ankyrin repeat protein [General function	98.93
PHA03095	471	ankyrin-like protein; Provisional	98.92
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	98.9
PHA02859	209	ankyrin repeat protein; Provisional	98.9
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	98.89
PHA02875	413	ankyrin repeat protein; Provisional	98.88
KOG0514	452	consensus Ankyrin repeat protein [General function	98.88
PHA03100	480	ankyrin repeat protein; Provisional	98.88
PHA02730	672	ankyrin-like protein; Provisional	98.86
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	98.85
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	98.84
PHA03095	471	ankyrin-like protein; Provisional	98.83
PHA02875	413	ankyrin repeat protein; Provisional	98.83
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	98.83
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	98.81
PHA02876	682	ankyrin repeat protein; Provisional	98.8
PHA02743	166	Viral ankyrin protein; Provisional	98.8
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	98.76
PHA02917	661	ankyrin-like protein; Provisional	98.76
PHA02798	489	ankyrin-like protein; Provisional	98.74
PHA03100	480	ankyrin repeat protein; Provisional	98.74
PHA02876	682	ankyrin repeat protein; Provisional	98.72
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	98.71
PHA02989	494	ankyrin repeat protein; Provisional	98.69
KOG0508	615	consensus Ankyrin repeat protein [General function	98.69
PHA02736	154	Viral ankyrin protein; Provisional	98.69
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	98.68
PHA02795	437	ankyrin-like protein; Provisional	98.67
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	98.67
PHA02795	437	ankyrin-like protein; Provisional	98.67
PHA02884	300	ankyrin repeat protein; Provisional	98.64
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	98.63
PHA02798	489	ankyrin-like protein; Provisional	98.63
PHA02989	494	ankyrin repeat protein; Provisional	98.61
PHA02917	661	ankyrin-like protein; Provisional	98.59
TIGR00870	743	trp transient-receptor-potential calcium channel p	98.57
PLN03192	823	Voltage-dependent potassium channel; Provisional	98.56
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	98.54
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	98.51
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	98.49
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	98.45
PHA02730	672	ankyrin-like protein; Provisional	98.43
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	98.41
KOG0514	452	consensus Ankyrin repeat protein [General function	98.41
KOG0512	228	consensus Fetal globin-inducing factor (contains a	98.39
TIGR00870	743	trp transient-receptor-potential calcium channel p	98.38
PHA02792	631	ankyrin-like protein; Provisional	98.36
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	98.33
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.31
PF13606	30	Ank_3: Ankyrin repeat	98.24
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	98.19
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.19
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	98.16
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	98.16
PHA02792	631	ankyrin-like protein; Provisional	98.09
KOG0508	615	consensus Ankyrin repeat protein [General function	98.08
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	98.07
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	98.06
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	97.99
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	97.86
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	97.83
KOG0522	560	consensus Ankyrin repeat protein [General function	97.81
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	97.71
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	97.68
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	97.68
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	97.55
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	97.42
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	97.28
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.23
PF13606	30	Ank_3: Ankyrin repeat	97.2
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	97.18
KOG2384	223	consensus Major histocompatibility complex protein	97.11
KOG0522	560	consensus Ankyrin repeat protein [General function	97.04
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	97.03
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	96.54
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	96.29
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	96.02
KOG0520	975	consensus Uncharacterized conserved protein, conta	95.82
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	95.65
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	95.54
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	95.31
KOG0520	975	consensus Uncharacterized conserved protein, conta	95.27
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	95.04
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	94.92
KOG0521	785	consensus Putative GTPase activating proteins (GAP	93.45
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	93.4
KOG0783	1267	consensus Uncharacterized conserved protein, conta	93.34
KOG0511	516	consensus Ankyrin repeat protein [General function	91.69
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	91.37
KOG2505	591	consensus Ankyrin repeat protein [General function	90.61
KOG2505	591	consensus Ankyrin repeat protein [General function	89.96
KOG0511	516	consensus Ankyrin repeat protein [General function	85.39
KOG4591	280	consensus Uncharacterized conserved protein, conta	83.38
KOG2384	223	consensus Major histocompatibility complex protein	82.0

>PF13962 PGG: Domain of unknown function

Probab=99.92  E-value=2.8e-25  Score=178.62  Aligned_cols=109  Identities=41%  Similarity=0.682  Sum_probs=97.3

Q ss_pred             cccccccchhHHHHHHHHHHHHHHhhccCCCCCcCC---CCcccccCCc-chhhhHhHHHHHHHHHHHHHHHHhhhcCcc
Q 021201          118 EKWMKDTASSCMIVATLIATVVFAAALTVPGGNKED---TGLPFFLHNV-SFKIFAVSNVISLVASTLSIVVFLSLVTPR  193 (316)
Q Consensus       118 ~k~lk~t~~s~lvvA~Liatvtf~a~~t~Pgg~~~~---~G~~~~~~~~-~f~~F~~~n~~a~~~S~~~i~~~~~~~~s~  193 (316)
                      +||++++++++++||+||||+||||+++||||+|||   +|+|++.+++ .|++|+++|++||++|+++++++++.+   
T Consensus         1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~~~G~~il~~~~~~f~~F~~~nt~af~~S~~~i~~l~~~~---   77 (113)
T PF13962_consen    1 KKWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDDDAGTPILAKKPSAFKAFLISNTIAFFSSLAAIFLLISGL---   77 (113)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCCchhccccchhhhHHHHHHHHHHHHHHHHHHHHHHh---
Confidence            478999999999999999999999999999999875   6999998777 999999999999999999998877422   


Q ss_pred             ccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhe
Q 021201          194 YAEKDFLSLLPRKLYVGLGTLFIAIAAMMVVFSATSFIV  232 (316)
Q Consensus       194 ~~~~~f~~~l~~~l~~~~~~l~~si~~m~~af~~~~~~v  232 (316)
                         +++.+..++.+.++..++++++.+|++||++|+++|
T Consensus        78 ---~~~~~~~~~~~~~~~~~~~~a~~~~~~Af~~g~~~v  113 (113)
T PF13962_consen   78 ---DDFRRFLRRYLLIASVLMWIALISMMVAFAAGIYLV  113 (113)
T ss_pred             ---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence               445566677788899999999999999999999875

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.51  E-value=1.3e-14  Score=122.82  Aligned_cols=54  Identities=24%  Similarity=0.261  Sum_probs=28.8

Q ss_pred             CCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCcccc
Q 021201            7 NRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNV   65 (316)
Q Consensus         7 ~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~   65 (316)
                      +||||||||+..|+.+|+++|++  .+.   ..+|.+|..|+||||+|+..|+.++++.
T Consensus        37 D~Rt~LHwa~S~g~~eiv~fLls--q~n---v~~ddkDdaGWtPlhia~s~g~~evVk~   90 (226)
T KOG4412|consen   37 DGRTPLHWACSFGHVEIVYFLLS--QPN---VKPDDKDDAGWTPLHIAASNGNDEVVKE   90 (226)
T ss_pred             cCCceeeeeeecCchhHHHHHHh--cCC---CCCCCccccCCchhhhhhhcCcHHHHHH
Confidence            55566666655555555555554  221   1245555555555555555555554443

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=2e-14  Score=121.78  Aligned_cols=100  Identities=22%  Similarity=0.240  Sum_probs=82.6

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcch-hhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cC---------
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDM-KAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SG---------   68 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~-~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~g---------   68 (316)
                      ++++|+.|+||||+|+.+|+.++|+.|+.  + ++    .+|++.+.|.|+||+||.+|..++..+|  .|         
T Consensus        65 ~ddkDdaGWtPlhia~s~g~~evVk~Ll~--r~~a----dvna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~  138 (226)
T KOG4412|consen   65 PDDKDDAGWTPLHIAASNGNDEVVKELLN--RSGA----DVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQ  138 (226)
T ss_pred             CCCccccCCchhhhhhhcCcHHHHHHHhc--CCCC----CcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccc
Confidence            57899999999999999999999999999  6 43    3799999999999999999999987766  23         


Q ss_pred             --chHHhHHHhhhHhHHHHhcc-chhhhhhccCCCCccccc
Q 021201           69 --SALQMQRELLWFQAVKKVVP-RKLAEAKNKKGLTPRALF  106 (316)
Q Consensus        69 --aal~~~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~  106 (316)
                        .+++-....+..+.++.++. ++.+|..|+.|.||++.+
T Consensus       139 ~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~a  179 (226)
T KOG4412|consen  139 GQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHA  179 (226)
T ss_pred             cCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHH
Confidence              23444455666777777663 578899999999999987

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.27  E-value=3.3e-12  Score=89.54  Aligned_cols=48  Identities=23%  Similarity=0.232  Sum_probs=31.8

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHH
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLA   54 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlA   54 (316)
                      ++.+|..|+||||+|+++|+.+++++|++  .+.+    ++.+|++|+||||+|
T Consensus         9 ~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~--~g~d----~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    9 VNAQDKYGNTPLHWAARYGHSEVVRLLLQ--NGAD----PNAKDKDGQTPLHYA   56 (56)
T ss_dssp             TT---TTS--HHHHHHHHT-HHHHHHHHH--CT------TT---TTS--HHHH-
T ss_pred             CcCcCCCCCcHHHHHHHcCcHHHHHHHHH--CcCC----CCCCcCCCCCHHHhC
Confidence            46789999999999999999999999998  7764    799999999999998

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.24  E-value=3.7e-12  Score=88.41  Aligned_cols=52  Identities=25%  Similarity=0.307  Sum_probs=40.4

Q ss_pred             CCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCcccc
Q 021201            8 RYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNV   65 (316)
Q Consensus         8 G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~   65 (316)
                      |+|+||+|++.|+.+++++|++  .+.+    +|.+|++|+||||+|++.|+.++++.
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~--~~~d----in~~d~~g~t~lh~A~~~g~~~~~~~   52 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLE--HGAD----INAQDEDGRTPLHYAAKNGNIDIVKF   52 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHH--TTSG----TT-B-TTS--HHHHHHHTT-HHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHH--CCCC----CCCCCCCCCCHHHHHHHccCHHHHHH
Confidence            7999999999999999999999  6653    79999999999999999998665543

...

>PHA02741 hypothetical protein; Provisional

Probab=99.22  E-value=5.8e-12  Score=107.97  Aligned_cols=83  Identities=20%  Similarity=0.245  Sum_probs=63.2

Q ss_pred             ccccCCCCcHHhHHHHCCC----HHHHHHHhhcchhhhhhhhcccCCC-CCChHHHHHhhhCCCCccccccCchHHhHHH
Q 021201            2 WKCDENRYTIFHIAVSNRQ----VELFKFIDADDMKAIADLLVDSTDG-EGNNILHLAGKLAPPDRLNVVSGSALQMQRE   76 (316)
Q Consensus         2 ~~~D~~G~T~LH~Av~~~~----~~iv~~Ll~~~~~~~~~~lin~~D~-~GnTpLHlAa~~~~~~~v~~L~gaal~~~~e   76 (316)
                      +.+|..|+||||+|+.+|+    .+++++|++  .+++    +|.+|. +|+||||+|+..++.++++.           
T Consensus        54 n~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~--~gad----in~~~~~~g~TpLh~A~~~~~~~iv~~-----------  116 (169)
T PHA02741         54 NATDDAGQMCIHIAAEKHEAQLAAEIIDHLIE--LGAD----INAQEMLEGDTALHLAAHRRDHDLAEW-----------  116 (169)
T ss_pred             hccCCCCCcHHHHHHHcCChHHHHHHHHHHHH--cCCC----CCCCCcCCCCCHHHHHHHcCCHHHHHH-----------
Confidence            5678888888888888888    477888887  6553    678875 88888888888887655433           


Q ss_pred             hhhHhHHHHhc--cchhhhhhccCCCCccccccchh
Q 021201           77 LLWFQAVKKVV--PRKLAEAKNKKGLTPRALFSEQH  110 (316)
Q Consensus        77 l~w~~~v~~lv--~~~~~~~~N~~G~Tp~~l~~~~~  110 (316)
                               ++  ++.+++.+|.+|+||++++....
T Consensus       117 ---------Ll~~~g~~~~~~n~~g~tpL~~A~~~~  143 (169)
T PHA02741        117 ---------LCCQPGIDLHFCNADNKSPFELAIDNE  143 (169)
T ss_pred             ---------HHhCCCCCCCcCCCCCCCHHHHHHHCC
Confidence                     33  24677889999999999987653

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.20  E-value=1.3e-11  Score=130.18  Aligned_cols=103  Identities=17%  Similarity=0.108  Sum_probs=85.2

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCcccccc-----------Cc
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVS-----------GS   69 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~-----------ga   69 (316)
                      ++..|.+|+||||+|+.+|+.+++++|++  .+++    +|.+|.+|+||||+|+..|+.+++++|.           +.
T Consensus       551 ~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~--~gad----in~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~~  624 (823)
T PLN03192        551 PDIGDSKGRTPLHIAASKGYEDCVLVLLK--HACN----VHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGD  624 (823)
T ss_pred             CCCCCCCCCCHHHHHHHcChHHHHHHHHh--cCCC----CCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCcccCch
Confidence            46789999999999999999999999999  7764    7999999999999999999998887661           23


Q ss_pred             hHHhHHHhhhHhHHHHhcc-chhhhhhccCCCCccccccch
Q 021201           70 ALQMQRELLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        70 al~~~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                      +++.....+..+.++.++. +.+++.+|++|+||++++...
T Consensus       625 ~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~  665 (823)
T PLN03192        625 LLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAE  665 (823)
T ss_pred             HHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
Confidence            4555555566666777664 578899999999999998754

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.17  E-value=1e-11  Score=106.22  Aligned_cols=80  Identities=16%  Similarity=0.160  Sum_probs=46.2

Q ss_pred             ccCCCCcHHhHHHHCCCHHH---HHHHhhcchhhhhhhhcccCC-CCCChHHHHHhhhCCCCccccccCchHHhHHHhhh
Q 021201            4 CDENRYTIFHIAVSNRQVEL---FKFIDADDMKAIADLLVDSTD-GEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLW   79 (316)
Q Consensus         4 ~D~~G~T~LH~Av~~~~~~i---v~~Ll~~~~~~~~~~lin~~D-~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w   79 (316)
                      +|.+|+||||+|+.+|+.+.   +++|++  .+++    +|.+| .+|+||||+|+..++.++                 
T Consensus        53 ~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~--~Gad----in~~d~~~g~TpLh~A~~~g~~~i-----------------  109 (166)
T PHA02743         53 YDHHGRQCTHMVAWYDRANAVMKIELLVN--MGAD----INARELGTGNTLLHIAASTKNYEL-----------------  109 (166)
T ss_pred             cCCCCCcHHHHHHHhCccCHHHHHHHHHH--cCCC----CCCCCCCCCCcHHHHHHHhCCHHH-----------------
Confidence            45555555555555555432   455555  4432    45555 355555555555555333                 


Q ss_pred             HhHHHHhc--cchhhhhhccCCCCccccccch
Q 021201           80 FQAVKKVV--PRKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        80 ~~~v~~lv--~~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                         ++.++  ...+++.+|.+|+||++++...
T Consensus       110 ---v~~Ll~~~gad~~~~d~~g~tpL~~A~~~  138 (166)
T PHA02743        110 ---AEWLCRQLGVNLGAINYQHETAYHIAYKM  138 (166)
T ss_pred             ---HHHHHhccCCCccCcCCCCCCHHHHHHHc
Confidence               33333  2456788899999999987654

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.10  E-value=1.3e-11  Score=103.95  Aligned_cols=79  Identities=18%  Similarity=0.113  Sum_probs=42.5

Q ss_pred             cCCCCcHHhHHHHCCCHH---HHHHHhhcchhhhhhhhcccCC-CCCChHHHHHhhhCCCCccccccCchHHhHHHhhhH
Q 021201            5 DENRYTIFHIAVSNRQVE---LFKFIDADDMKAIADLLVDSTD-GEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWF   80 (316)
Q Consensus         5 D~~G~T~LH~Av~~~~~~---iv~~Ll~~~~~~~~~~lin~~D-~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~   80 (316)
                      |.+|+||||+|+.+++.+   ++++|++  .+.+    +|.+| .+|+||||+|+..++.+                   
T Consensus        52 d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~--~gad----in~~~~~~g~T~Lh~A~~~~~~~-------------------  106 (154)
T PHA02736         52 NRHGKQCVHIVSNPDKADPQEKLKLLME--WGAD----INGKERVFGNTPLHIAVYTQNYE-------------------  106 (154)
T ss_pred             cCCCCEEEEeecccCchhHHHHHHHHHH--cCCC----ccccCCCCCCcHHHHHHHhCCHH-------------------
Confidence            444444444444444432   3444444  3322    34454 25555555555555433                   


Q ss_pred             hHHHHhcc--chhhhhhccCCCCccccccch
Q 021201           81 QAVKKVVP--RKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        81 ~~v~~lv~--~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                       .++.++.  ..+++.+|++|+||++++...
T Consensus       107 -i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~  136 (154)
T PHA02736        107 -LATWLCNQPGVNMEILNYAFKTPYYVACER  136 (154)
T ss_pred             -HHHHHHhCCCCCCccccCCCCCHHHHHHHc
Confidence             3343442  456788889999999887754

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.08  E-value=4.1e-11  Score=108.37  Aligned_cols=104  Identities=20%  Similarity=0.212  Sum_probs=76.7

Q ss_pred             ccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cCch---------
Q 021201            2 WKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SGSA---------   70 (316)
Q Consensus         2 ~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~gaa---------   70 (316)
                      |.-|+.|-+|||+|++.||..+++.|+.  +++.    +|..+....||||+||..|+.+++..|  ..++         
T Consensus        28 n~gddhgfsplhwaakegh~aivemll~--rgar----vn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgn  101 (448)
T KOG0195|consen   28 NVGDDHGFSPLHWAAKEGHVAIVEMLLS--RGAR----VNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGN  101 (448)
T ss_pred             ccccccCcchhhhhhhcccHHHHHHHHh--cccc----cccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCC
Confidence            3457889999999999999999999999  7765    688888888999999999998887654  1222         


Q ss_pred             --HHhHHHhhhHhHHHHhcc-chhhhhhccCCCCccccccchhh
Q 021201           71 --LQMQRELLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSEQHR  111 (316)
Q Consensus        71 --l~~~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~~~~  111 (316)
                        ++...-.+.-+..|.++. ++.++..|++|.||+|.++...+
T Consensus       102 tplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkakp~l~  145 (448)
T KOG0195|consen  102 TPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKPMLK  145 (448)
T ss_pred             CchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhchHHH
Confidence              222222222333455554 46789999999999998876543

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.07  E-value=7.9e-11  Score=104.55  Aligned_cols=103  Identities=17%  Similarity=0.102  Sum_probs=72.1

Q ss_pred             Ccccc-CCCCcHHhHHHHC---CCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhh--CCCCccccc--cCch--
Q 021201            1 MWKCD-ENRYTIFHIAVSN---RQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKL--APPDRLNVV--SGSA--   70 (316)
Q Consensus         1 i~~~D-~~G~T~LH~Av~~---~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~--~~~~~v~~L--~gaa--   70 (316)
                      ++.+| ..|+||||+|+..   ++.+++++|++  ++++    +|.+|.+|.||||+|+..  ++.+++++|  .|+.  
T Consensus        79 vn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~--~gad----in~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin  152 (209)
T PHA02859         79 VNFKTRDNNLSALHHYLSFNKNVEPEILKILID--SGSS----ITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFL  152 (209)
T ss_pred             CCccCCCCCCCHHHHHHHhCccccHHHHHHHHH--CCCC----CCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcc
Confidence            35565 4799999998864   47899999999  7764    799999999999998764  456666655  3332  


Q ss_pred             ---------HHhH-HHhhhHhHHHHhc-cchhhhhhccCCCCccccccch
Q 021201           71 ---------LQMQ-RELLWFQAVKKVV-PRKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        71 ---------l~~~-~el~w~~~v~~lv-~~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                               ++.. ..-...+.++.++ .+.+++.+|..|+||++++..+
T Consensus       153 ~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~  202 (209)
T PHA02859        153 NKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDLIKFR  202 (209)
T ss_pred             cccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhh
Confidence                     2221 1112234445455 3577899999999999988754

>PHA02741 hypothetical protein; Provisional

Probab=99.06  E-value=9.4e-11  Score=100.47  Aligned_cols=93  Identities=13%  Similarity=0.125  Sum_probs=65.9

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhH
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWF   80 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~   80 (316)
                      ++.+|..|+|+||+|++.|+.+++++|+....+......+|.+|..|+||||+|+..++.+.+.                
T Consensus        14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~----------------   77 (169)
T PHA02741         14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAA----------------   77 (169)
T ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHH----------------
Confidence            3567899999999999999999999986411110111236899999999999999988843210                


Q ss_pred             hHHHHhc-cchhhhhhcc-CCCCccccccch
Q 021201           81 QAVKKVV-PRKLAEAKNK-KGLTPRALFSEQ  109 (316)
Q Consensus        81 ~~v~~lv-~~~~~~~~N~-~G~Tp~~l~~~~  109 (316)
                      +.++.++ .+.+++.+|. +|+||++++...
T Consensus        78 ~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~  108 (169)
T PHA02741         78 EIIDHLIELGADINAQEMLEGDTALHLAAHR  108 (169)
T ss_pred             HHHHHHHHcCCCCCCCCcCCCCCHHHHHHHc
Confidence            1122222 2456788885 899999987654

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.05  E-value=7.9e-11  Score=99.47  Aligned_cols=60  Identities=23%  Similarity=0.203  Sum_probs=52.9

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV   66 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L   66 (316)
                      +|.+|++|.||||-|+.+||.+|++.|+.  .+++    .+++.++|+||||-|++-.+.+++.+|
T Consensus        90 vNtrD~D~YTpLHRAaYn~h~div~~ll~--~gAn----~~a~T~~GWTPLhSAckWnN~~va~~L  149 (228)
T KOG0512|consen   90 VNTRDEDEYTPLHRAAYNGHLDIVHELLL--SGAN----KEAKTNEGWTPLHSACKWNNFEVAGRL  149 (228)
T ss_pred             ccccccccccHHHHHHhcCchHHHHHHHH--ccCC----cccccccCccchhhhhcccchhHHHHH
Confidence            57899999999999999999999999998  6665    588999999999999998887776554

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.05  E-value=1.6e-10  Score=113.20  Aligned_cols=102  Identities=24%  Similarity=0.210  Sum_probs=77.1

Q ss_pred             ccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cC-----------
Q 021201            2 WKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SG-----------   68 (316)
Q Consensus         2 ~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~g-----------   68 (316)
                      +.+|..|+||||+|+++|+.+++++|++  .+++    +|.+|.+|+||||+|+..++.++++.|  .|           
T Consensus       118 n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~--~gad----~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~  191 (434)
T PHA02874        118 NIKDAELKTFLHYAIKKGDLESIKMLFE--YGAD----VNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGE  191 (434)
T ss_pred             CCCCCCCccHHHHHHHCCCHHHHHHHHh--CCCC----CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCC
Confidence            4578899999999999999999999999  6654    688999999999999999988877665  22           


Q ss_pred             chHHhHHHhhhHhHHHHhcc-chhhhhhccCCCCccccccch
Q 021201           69 SALQMQRELLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        69 aal~~~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                      .+++...+.+..+.++.++. +.+.+.++.+|.||++.+...
T Consensus       192 tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~  233 (434)
T PHA02874        192 SPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIH  233 (434)
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHC
Confidence            34555555555555665553 355677777888888877544

>PHA02946 ankyin-like protein; Provisional

Probab=99.04  E-value=1.4e-10  Score=114.32  Aligned_cols=101  Identities=15%  Similarity=0.064  Sum_probs=70.9

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCC--CCccccc--cCchHHh---
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAP--PDRLNVV--SGSALQM---   73 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~--~~~v~~L--~gaal~~---   73 (316)
                      ++.+|.+|+||||+|+++|+.+++++|++  ++++    +|.+|.+|+||||+|+..++  .+++++|  .|+..+.   
T Consensus        65 vn~~d~~G~TpLh~Aa~~g~~eiv~lLL~--~GAd----in~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d  138 (446)
T PHA02946         65 PNETDDDGNYPLHIASKINNNRIVAMLLT--HGAD----PNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVD  138 (446)
T ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHHH--CcCC----CCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccC
Confidence            46789999999999999999999999999  7764    79999999999999987664  3344444  3433321   


Q ss_pred             --------HHHhhhHhHHHHhcc-chhhhhhccCCCCcccccc
Q 021201           74 --------QRELLWFQAVKKVVP-RKLAEAKNKKGLTPRALFS  107 (316)
Q Consensus        74 --------~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~  107 (316)
                              ...-+..+.++.++. +.+.+.+|++|+||++.+.
T Consensus       139 ~~g~tpL~aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~  181 (446)
T PHA02946        139 EEGCGPLLACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHL  181 (446)
T ss_pred             CCCCcHHHHHHCCChHHHHHHHhccccccccCCCCCCHHHHHH
Confidence                    111112233444442 4566777888888887654

>PHA02791 ankyrin-like protein; Provisional

Probab=99.04  E-value=1.8e-10  Score=106.96  Aligned_cols=96  Identities=11%  Similarity=-0.009  Sum_probs=68.6

Q ss_pred             CCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cCc------------hHH
Q 021201            7 NRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SGS------------ALQ   72 (316)
Q Consensus         7 ~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~ga------------al~   72 (316)
                      +|+||||+|+++|+.+++++|++  .+++    +|.+|.+|+||||+|+..++.++++.|  .|+            +++
T Consensus        60 d~~TpLh~Aa~~g~~eiV~lLL~--~Gad----vn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~  133 (284)
T PHA02791         60 ENEFPLHQAATLEDTKIVKILLF--SGMD----DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFY  133 (284)
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHH--CCCC----CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHH
Confidence            47899999999999999999998  6654    688999999999999999998888766  233            333


Q ss_pred             hHHHhhhHhHHHHhccchhhhhhc-cCCCCccccccch
Q 021201           73 MQRELLWFQAVKKVVPRKLAEAKN-KKGLTPRALFSEQ  109 (316)
Q Consensus        73 ~~~el~w~~~v~~lv~~~~~~~~N-~~G~Tp~~l~~~~  109 (316)
                      .+...+..+.++.++... .+..| ..|.||++++...
T Consensus       134 ~Aa~~g~~eivk~LL~~~-~~~~d~~~g~TpLh~Aa~~  170 (284)
T PHA02791        134 HAVMLNDVSIVSYFLSEI-PSTFDLAILLSCIHITIKN  170 (284)
T ss_pred             HHHHcCCHHHHHHHHhcC-CcccccccCccHHHHHHHc
Confidence            333333445555555421 11223 3589999998765

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.00  E-value=1.4e-10  Score=113.49  Aligned_cols=102  Identities=18%  Similarity=0.200  Sum_probs=78.9

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cCc---------
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SGS---------   69 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~ga---------   69 (316)
                      ++.+|..|+||||+|+++|+.+++++|++  .++.    ++.+|.+|+||||+|+..|+.++++.|  .|+         
T Consensus       150 ~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~--~g~~----~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g  223 (434)
T PHA02874        150 VNIEDDNGCYPIHIAIKHNFFDIIKLLLE--KGAY----ANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNG  223 (434)
T ss_pred             CCCcCCCCCCHHHHHHHCCcHHHHHHHHH--CCCC----CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCC
Confidence            35678999999999999999999999999  7654    688999999999999999998888766  232         


Q ss_pred             --hHHhHHHhhhHhHHHHhccchhhhhhccCCCCccccccch
Q 021201           70 --ALQMQRELLWFQAVKKVVPRKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        70 --al~~~~el~w~~~v~~lv~~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                        +++.... ...+.++.++....++.+|.+|.||++.+...
T Consensus       224 ~TpL~~A~~-~~~~~i~~Ll~~~~in~~d~~G~TpLh~A~~~  264 (434)
T PHA02874        224 FTPLHNAII-HNRSAIELLINNASINDQDIDGSTPLHHAINP  264 (434)
T ss_pred             CCHHHHHHH-CChHHHHHHHcCCCCCCcCCCCCCHHHHHHhc
Confidence              2332221 12234555555677888999999999988753

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.00  E-value=1.8e-10  Score=114.30  Aligned_cols=60  Identities=23%  Similarity=0.220  Sum_probs=52.6

Q ss_pred             CccccCC-CCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc
Q 021201            1 MWKCDEN-RYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV   66 (316)
Q Consensus         1 i~~~D~~-G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L   66 (316)
                      ++.+|.. |+||||+|+.+|+.+++++|++  .+++    +|.+|.+|+||||+|+..++.++++.|
T Consensus       160 in~~~~~~g~tpLh~A~~~~~~~iv~~Ll~--~gad----~n~~d~~g~tpLh~A~~~~~~~iv~~L  220 (477)
T PHA02878        160 INMKDRHKGNTALHYATENKDQRLTELLLS--YGAN----VNIPDKTNNSPLHHAVKHYNKPIVHIL  220 (477)
T ss_pred             CCccCCCCCCCHHHHHHhCCCHHHHHHHHH--CCCC----CCCcCCCCCCHHHHHHHhCCHHHHHHH
Confidence            3556777 9999999999999999999999  7764    689999999999999999987776655

>PHA02878 ankyrin repeat protein; Provisional

Probab=98.98  E-value=2.5e-10  Score=113.17  Aligned_cols=100  Identities=20%  Similarity=0.171  Sum_probs=73.2

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhh-CCCCccccc--cCch-------
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKL-APPDRLNVV--SGSA-------   70 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~-~~~~~v~~L--~gaa-------   70 (316)
                      ++.+|..|+||||+|+++++.+++++|++  .++.    +|.+|.+|+||||+|+.. ++.+++++|  .|+.       
T Consensus       194 ~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~--~ga~----in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~  267 (477)
T PHA02878        194 VNIPDKTNNSPLHHAVKHYNKPIVHILLE--NGAS----TDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYI  267 (477)
T ss_pred             CCCcCCCCCCHHHHHHHhCCHHHHHHHHH--cCCC----CCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCC
Confidence            35678999999999999999999999999  7764    789999999999999976 566666554  2332       


Q ss_pred             -----HHhHHHhhhHhHHHHhcc-chhhhhhccCCCCccccccc
Q 021201           71 -----LQMQRELLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSE  108 (316)
Q Consensus        71 -----l~~~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~  108 (316)
                           ++..  ....+.++.++. +++++.+|.+|+||++++..
T Consensus       268 ~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~~  309 (477)
T PHA02878        268 LGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLSSAVK  309 (477)
T ss_pred             CCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence                 2222  122333444443 46778888888888887654

>PHA02884 ankyrin repeat protein; Provisional

Probab=98.97  E-value=3.1e-10  Score=105.86  Aligned_cols=102  Identities=13%  Similarity=0.062  Sum_probs=70.5

Q ss_pred             ccccCCCCc-HHhHHHHCCCHHHHHHHhhcchhhhhhhhcccC----CCCCChHHHHHhhhCCCCccccc--cCch----
Q 021201            2 WKCDENRYT-IFHIAVSNRQVELFKFIDADDMKAIADLLVDST----DGEGNNILHLAGKLAPPDRLNVV--SGSA----   70 (316)
Q Consensus         2 ~~~D~~G~T-~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~----D~~GnTpLHlAa~~~~~~~v~~L--~gaa----   70 (316)
                      -++|+.|+| +||.|+++++.+++++|++  .|++    +|.+    |.+|.||||+|+..++.+.++.|  .|+.    
T Consensus        26 ~~~d~~~~~~lL~~A~~~~~~eivk~LL~--~GAd----iN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~   99 (300)
T PHA02884         26 KKKNKICIANILYSSIKFHYTDIIDAILK--LGAD----PEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRY   99 (300)
T ss_pred             hccCcCCCCHHHHHHHHcCCHHHHHHHHH--CCCC----ccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcc
Confidence            456777775 4666677788888888888  6664    4665    45788888888888887776655  3333    


Q ss_pred             --------HHhHHHhhhHhHHHHhcc-chhhhhhccCCCCccccccch
Q 021201           71 --------LQMQRELLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        71 --------l~~~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                              ++.+...++.+.++.++. +++++.+|.+|+||++++.+.
T Consensus       100 ~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~  147 (300)
T PHA02884        100 AEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMI  147 (300)
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHh
Confidence                    333333444555565553 578899999999999988653

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.97  E-value=2.4e-10  Score=115.28  Aligned_cols=101  Identities=19%  Similarity=0.191  Sum_probs=58.3

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cCchHH------
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SGSALQ------   72 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~gaal~------   72 (316)
                      |+.+++++.||||.||.+|+.+.++-|++  ....  .++|+.|..|+||||+|++.|+..++++|  .|+.+.      
T Consensus       299 I~~kn~d~~spLH~AA~yg~~ntv~rLL~--~~~~--rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D  374 (929)
T KOG0510|consen  299 INSKNKDEESPLHFAAIYGRINTVERLLQ--ESDT--RLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEAD  374 (929)
T ss_pred             ccccCCCCCCchHHHHHcccHHHHHHHHh--CcCc--cccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccc
Confidence            45566666666666666666666666665  2111  13566666666666666666666655554  333322      


Q ss_pred             --------hHHHhhhHhHHHHhc-cchhhhhhccCCCCcccc
Q 021201           73 --------MQRELLWFQAVKKVV-PRKLAEAKNKKGLTPRAL  105 (316)
Q Consensus        73 --------~~~el~w~~~v~~lv-~~~~~~~~N~~G~Tp~~l  105 (316)
                              ....-+.-..|+.++ +++++..+|+.|++++++
T Consensus       375 ~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  375 SDGNTALHLAAKYGNTSAVQKLISHGADIGVKNKKGKSAFDT  416 (929)
T ss_pred             cCCchhhhHHHHhccHHHHHHHHHcCCceeeccccccccccc
Confidence                    111112233344444 456777888888888874

>PHA02791 ankyrin-like protein; Provisional

Probab=98.97  E-value=2.8e-10  Score=105.65  Aligned_cols=81  Identities=17%  Similarity=0.162  Sum_probs=61.7

Q ss_pred             ccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhHh
Q 021201            2 WKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQ   81 (316)
Q Consensus         2 ~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~~   81 (316)
                      +..|.+|+||||+|+++|+.+++++|++  .++.    +|.+  +|+||||+|+..++.++++.|               
T Consensus        24 ~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~--~ga~----~n~~--d~~TpLh~Aa~~g~~eiV~lL---------------   80 (284)
T PHA02791         24 FKADVHGHSALYYAIADNNVRLVCTLLN--AGAL----KNLL--ENEFPLHQAATLEDTKIVKIL---------------   80 (284)
T ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHH--CcCC----CcCC--CCCCHHHHHHHCCCHHHHHHH---------------
Confidence            3578999999999999999999999999  7653    4554  479999999999987766554               


Q ss_pred             HHHHhccchhhhhhccCCCCccccccch
Q 021201           82 AVKKVVPRKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        82 ~v~~lv~~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                       +   -.+.+++.+|.+|+||++++...
T Consensus        81 -L---~~Gadvn~~d~~G~TpLh~Aa~~  104 (284)
T PHA02791         81 -L---FSGMDDSQFDDKGNTALYYAVDS  104 (284)
T ss_pred             -H---HCCCCCCCCCCCCCCHHHHHHHc
Confidence             0   12345566777777777776543

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=98.97  E-value=2.8e-10  Score=112.35  Aligned_cols=102  Identities=16%  Similarity=0.203  Sum_probs=66.0

Q ss_pred             ccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCC-CCCChHHHHHhhhCCCCccccc--cCchH-------
Q 021201            2 WKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTD-GEGNNILHLAGKLAPPDRLNVV--SGSAL-------   71 (316)
Q Consensus         2 ~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D-~~GnTpLHlAa~~~~~~~v~~L--~gaal-------   71 (316)
                      ++.|++|-|+||+|+.|++.+++++|++  ++++    +|+.+ .-|.||||+|+++|+..++.+|  .|++.       
T Consensus        72 ~~~D~~g~tlLHWAAiNNrl~v~r~li~--~gad----vn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G  145 (600)
T KOG0509|consen   72 NNPDREGVTLLHWAAINNRLDVARYLIS--HGAD----VNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQG  145 (600)
T ss_pred             CCCCcCCccceeHHHHcCcHHHHHHHHH--cCCC----ccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCC
Confidence            5667788888888888888888888888  6664    67777 5667888888888877776665  34332       


Q ss_pred             ----HhHHHhhhHhHHHHhc-cchhhhhhccCCCCccccccch
Q 021201           72 ----QMQRELLWFQAVKKVV-PRKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        72 ----~~~~el~w~~~v~~lv-~~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                          +.....+..--|-.++ ...+++.+|++|+||+..+..+
T Consensus       146 ~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAayk  188 (600)
T KOG0509|consen  146 LTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYK  188 (600)
T ss_pred             CcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHh
Confidence                2222222222222222 2366778888888888776544

>PHA02946 ankyin-like protein; Provisional

Probab=98.96  E-value=6.7e-10  Score=109.47  Aligned_cols=99  Identities=19%  Similarity=0.214  Sum_probs=58.0

Q ss_pred             ccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCC--Cccccc--cC-----------
Q 021201            4 CDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPP--DRLNVV--SG-----------   68 (316)
Q Consensus         4 ~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~--~~v~~L--~g-----------   68 (316)
                      .|.+|+|||| |+..++.+++++|++  .+++    ++.+|.+|+||||+|+..++.  +.++.+  .|           
T Consensus       137 ~d~~g~tpL~-aa~~~~~~vv~~Ll~--~gad----~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~  209 (446)
T PHA02946        137 VDEEGCGPLL-ACTDPSERVFKKIMS--IGFE----ARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGN  209 (446)
T ss_pred             cCCCCCcHHH-HHHCCChHHHHHHHh--cccc----ccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCC
Confidence            4566666666 445566666666666  5442    466666666666666654443  222222  12           


Q ss_pred             chHHhHHHhh--hHhHHHHhccchhhhhhccCCCCccccccch
Q 021201           69 SALQMQRELL--WFQAVKKVVPRKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        69 aal~~~~el~--w~~~v~~lv~~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                      .+++...+-+  ..+.++.++++.+++.+|++|+||++++.+.
T Consensus       210 TpLH~Aa~~~~~~~~iv~lLl~gadin~~d~~G~TpLh~A~~~  252 (446)
T PHA02946        210 TPLHIVCSKTVKNVDIINLLLPSTDVNKQNKFGDSPLTLLIKT  252 (446)
T ss_pred             CHHHHHHHcCCCcHHHHHHHHcCCCCCCCCCCCCCHHHHHHHh
Confidence            2333332211  2334555566778999999999999987764

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.93  E-value=7.6e-10  Score=111.71  Aligned_cols=60  Identities=17%  Similarity=0.178  Sum_probs=53.8

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV   66 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L   66 (316)
                      ++++|++|.||||+|+++|+.+.++.|++  .|+.    +|.+++++.||||.||..|+.+.++.|
T Consensus       266 v~~~d~dg~tpLH~a~r~G~~~svd~Ll~--~Ga~----I~~kn~d~~spLH~AA~yg~~ntv~rL  325 (929)
T KOG0510|consen  266 VNDEDNDGCTPLHYAARQGGPESVDNLLG--FGAS----INSKNKDEESPLHFAAIYGRINTVERL  325 (929)
T ss_pred             hhcccccCCchHHHHHHcCChhHHHHHHH--cCCc----ccccCCCCCCchHHHHHcccHHHHHHH
Confidence            47899999999999999999999999999  7764    799999999999999999987765443

>PHA03095 ankyrin-like protein; Provisional

Probab=98.92  E-value=5e-10  Score=110.25  Aligned_cols=101  Identities=16%  Similarity=0.170  Sum_probs=65.8

Q ss_pred             cccCCCCcHHhHHHHC--CCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCC--ccccc--cC--------
Q 021201            3 KCDENRYTIFHIAVSN--RQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPD--RLNVV--SG--------   68 (316)
Q Consensus         3 ~~D~~G~T~LH~Av~~--~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~--~v~~L--~g--------   68 (316)
                      ..|..|+||||+|+..  ++.+++++|++  .+.+    ++.+|.+|+||||+|+..++..  .+..+  .|        
T Consensus       182 ~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~--~g~~----~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~  255 (471)
T PHA03095        182 AVDDRFRSLLHHHLQSFKPRARIVRELIR--AGCD----PAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNR  255 (471)
T ss_pred             ccCCCCCCHHHHHHHHCCCcHHHHHHHHH--cCCC----CcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCC
Confidence            4467778888877764  56677777777  5543    5777777777777777766532  11111  11        


Q ss_pred             ---chHHhHHHhhhHhHHHHhcc-chhhhhhccCCCCccccccch
Q 021201           69 ---SALQMQRELLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        69 ---aal~~~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                         .+++.....+..+.++.++. +++++.+|.+|+||++++...
T Consensus       256 ~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~  300 (471)
T PHA03095        256 YGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRN  300 (471)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHh
Confidence               34444444444555665553 578899999999999988654

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=98.90  E-value=6.2e-10  Score=84.61  Aligned_cols=53  Identities=26%  Similarity=0.362  Sum_probs=46.5

Q ss_pred             CCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc
Q 021201            8 RYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV   66 (316)
Q Consensus         8 G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L   66 (316)
                      |+||||+|+.+|+.+++++|++  .+.+    +|.+|.+|+||||+|+..++.++++.+
T Consensus        26 ~~~~l~~A~~~~~~~~~~~Ll~--~g~~----~~~~~~~g~t~L~~A~~~~~~~~~~~L   78 (89)
T PF12796_consen   26 GNTALHYAAENGNLEIVKLLLE--NGAD----INSQDKNGNTALHYAAENGNLEIVKLL   78 (89)
T ss_dssp             SSBHHHHHHHTTTHHHHHHHHH--TTTC----TT-BSTTSSBHHHHHHHTTHHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHH--hccc----ccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            8999999999999999999999  7664    689999999999999999987766554

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02859 ankyrin repeat protein; Provisional

Probab=98.90  E-value=7.3e-10  Score=98.33  Aligned_cols=83  Identities=14%  Similarity=0.137  Sum_probs=48.3

Q ss_pred             ccccCCCCcHHhHHHHCC--CHHHHHHHhhcchhhhhhhhcccCC-CCCChHHHHHhhhCCCCccccccCchHHhHHHhh
Q 021201            2 WKCDENRYTIFHIAVSNR--QVELFKFIDADDMKAIADLLVDSTD-GEGNNILHLAGKLAPPDRLNVVSGSALQMQRELL   78 (316)
Q Consensus         2 ~~~D~~G~T~LH~Av~~~--~~~iv~~Ll~~~~~~~~~~lin~~D-~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~   78 (316)
                      +..|..|+||||+|++++  +.+++++|++  .+++    +|.+| .+|.||||+|+..+...                 
T Consensus        45 n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~--~gad----vn~~~~~~g~TpLh~a~~~~~~~-----------------  101 (209)
T PHA02859         45 NDCNDLYETPIFSCLEKDKVNVEILKFLIE--NGAD----VNFKTRDNNLSALHHYLSFNKNV-----------------  101 (209)
T ss_pred             hccCccCCCHHHHHHHcCCCCHHHHHHHHH--CCCC----CCccCCCCCCCHHHHHHHhCccc-----------------
Confidence            345666777777776644  5667777776  5543    46665 36667777665432110                 


Q ss_pred             hHhHHHHhc-cchhhhhhccCCCCcccccc
Q 021201           79 WFQAVKKVV-PRKLAEAKNKKGLTPRALFS  107 (316)
Q Consensus        79 w~~~v~~lv-~~~~~~~~N~~G~Tp~~l~~  107 (316)
                      ..+.++.++ .+.+++.+|.+|.||++.+.
T Consensus       102 ~~eiv~~Ll~~gadin~~d~~G~TpLh~a~  131 (209)
T PHA02859        102 EPEILKILIDSGSSITEEDEDGKNLLHMYM  131 (209)
T ss_pred             cHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence            112223233 24667788888888888754

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=98.89  E-value=5.1e-10  Score=110.49  Aligned_cols=95  Identities=21%  Similarity=0.182  Sum_probs=71.9

Q ss_pred             CcHHhHHHHCCCHHHHHHHhhcch-hhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cCchHH------------h
Q 021201            9 YTIFHIAVSNRQVELFKFIDADDM-KAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SGSALQ------------M   73 (316)
Q Consensus         9 ~T~LH~Av~~~~~~iv~~Ll~~~~-~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~gaal~------------~   73 (316)
                      .+.++.|+++|..+-++.+++  . +.    .+|..|.+|-|+||.||.+++.++++++  .|++.+            -
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve--~~g~----~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHW  118 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVE--SEGE----SVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHW  118 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHh--hcCc----CCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchH
Confidence            456788999999999999999  5 33    2689999999999999999998887766  333332            2


Q ss_pred             HHHhhhHhHHHHhcc-chhhhhhccCCCCccccccch
Q 021201           74 QRELLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        74 ~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                      ...-+....|+-+++ +++++++|.+|.+|+|++...
T Consensus       119 Aar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~  155 (600)
T KOG0509|consen  119 AARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQF  155 (600)
T ss_pred             HHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHh
Confidence            222333566666664 588999999999999987653

>PHA02875 ankyrin repeat protein; Provisional

Probab=98.88  E-value=8.7e-10  Score=107.07  Aligned_cols=101  Identities=18%  Similarity=0.173  Sum_probs=67.1

Q ss_pred             ccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cC-----------ch
Q 021201            4 CDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SG-----------SA   70 (316)
Q Consensus         4 ~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~g-----------aa   70 (316)
                      .+.+|+||||.|++.|+.+++++|++  .+..   ..+..|.+|+||||+|+..++.++++.|  .|           .+
T Consensus        64 ~~~~~~t~L~~A~~~g~~~~v~~Ll~--~~~~---~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tp  138 (413)
T PHA02875         64 KYPDIESELHDAVEEGDVKAVEELLD--LGKF---ADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSP  138 (413)
T ss_pred             cCCCcccHHHHHHHCCCHHHHHHHHH--cCCc---ccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCH
Confidence            45667788888888888888888877  5432   1245567788888888887777766554  22           23


Q ss_pred             HHhHHHhhhHhHHHHhcc-chhhhhhccCCCCccccccch
Q 021201           71 LQMQRELLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        71 l~~~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                      ++.....+..+.++.++. +.+++.+|.+|.||++++...
T Consensus       139 Lh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~  178 (413)
T PHA02875        139 LHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAK  178 (413)
T ss_pred             HHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHc
Confidence            444444444555555553 456788889999999987654

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.88  E-value=5.7e-10  Score=103.77  Aligned_cols=80  Identities=23%  Similarity=0.249  Sum_probs=69.4

Q ss_pred             CCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhHhHHHH
Q 021201            6 ENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQAVKK   85 (316)
Q Consensus         6 ~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~~~v~~   85 (316)
                      ..|+|+|++||.+|+.++|+.|+.  .+++    +|.+|.+|-|+|..|+.+|+.+++++|-                  
T Consensus       338 Q~gQTALMLAVSHGr~d~vk~LLa--cgAd----VNiQDdDGSTALMCA~EHGhkEivklLL------------------  393 (452)
T KOG0514|consen  338 QHGQTALMLAVSHGRVDMVKALLA--CGAD----VNIQDDDGSTALMCAAEHGHKEIVKLLL------------------  393 (452)
T ss_pred             hhcchhhhhhhhcCcHHHHHHHHH--ccCC----CccccCCccHHHhhhhhhChHHHHHHHh------------------
Confidence            359999999999999999999999  7764    8999999999999999999988776551                  


Q ss_pred             hccchhhhhhccCCCCccccccch
Q 021201           86 VVPRKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        86 lv~~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                      ..|.++....|.||-|++.++-+.
T Consensus       394 A~p~cd~sLtD~DgSTAl~IAlea  417 (452)
T KOG0514|consen  394 AVPSCDISLTDVDGSTALSIALEA  417 (452)
T ss_pred             ccCcccceeecCCCchhhhhHHhc
Confidence            235678889999999999998765

>PHA03100 ankyrin repeat protein; Provisional

Probab=98.88  E-value=1.4e-09  Score=107.54  Aligned_cols=101  Identities=14%  Similarity=0.211  Sum_probs=57.4

Q ss_pred             cccCCCCcHHhHHHHCC--CHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cCc---------
Q 021201            3 KCDENRYTIFHIAVSNR--QVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SGS---------   69 (316)
Q Consensus         3 ~~D~~G~T~LH~Av~~~--~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~ga---------   69 (316)
                      ..|..|+||||+|++.+  +.+++++|++  .+++    +|.+|.+|+||||+|+..|+.+.++.+  .|+         
T Consensus       136 ~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~--~g~d----in~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~  209 (480)
T PHA03100        136 IKNSDGENLLHLYLESNKIDLKILKLLID--KGVD----INAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIET  209 (480)
T ss_pred             ccCCCCCcHHHHHHHcCCChHHHHHHHHH--CCCC----cccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCC
Confidence            45566666666666666  6666666666  5442    466666777777777776666655544  121         


Q ss_pred             --------hHHhHHHhhh--HhHHHHhcc-chhhhhhccCCCCccccccch
Q 021201           70 --------ALQMQRELLW--FQAVKKVVP-RKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        70 --------al~~~~el~w--~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                              +++.....+.  .+.++.++. +.+++.+|.+|.||++.+...
T Consensus       210 ~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~  260 (480)
T PHA03100        210 LLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYN  260 (480)
T ss_pred             CcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence                    1122222222  334444443 256677777777777776543

>PHA02730 ankyrin-like protein; Provisional

Probab=98.86  E-value=1.5e-09  Score=110.51  Aligned_cols=101  Identities=16%  Similarity=0.161  Sum_probs=72.5

Q ss_pred             cccCCCCcHHhHHHHCC---CHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhC--CCCccccc--cCch--HH-
Q 021201            3 KCDENRYTIFHIAVSNR---QVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLA--PPDRLNVV--SGSA--LQ-   72 (316)
Q Consensus         3 ~~D~~G~T~LH~Av~~~---~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~--~~~~v~~L--~gaa--l~-   72 (316)
                      .+|..|+||||+|+.++   +.+++++|++  +|++    +|++|.+|+||||+|+..+  +.+++++|  .|+.  .+ 
T Consensus        36 ~kd~~G~TaLh~A~~~~~~~~~eivklLLs--~GAd----in~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~  109 (672)
T PHA02730         36 HIDRRGNNALHCYVSNKCDTDIKIVRLLLS--RGVE----RLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNEL  109 (672)
T ss_pred             hcCCCCCcHHHHHHHcCCcCcHHHHHHHHh--CCCC----CcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCccc
Confidence            67889999999999997   5899999999  8875    7999999999999999976  67788776  3321  11 


Q ss_pred             ------------hHHHhhhHhHHHHhcc--chhhhhhc-----cCCCCccccccch
Q 021201           73 ------------MQRELLWFQAVKKVVP--RKLAEAKN-----KKGLTPRALFSEQ  109 (316)
Q Consensus        73 ------------~~~el~w~~~v~~lv~--~~~~~~~N-----~~G~Tp~~l~~~~  109 (316)
                                  +..+-...+.||.++.  ..+++..+     .+|.+|+.++++.
T Consensus       110 ~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~  165 (672)
T PHA02730        110 TSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPN  165 (672)
T ss_pred             ccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCC
Confidence                        1122223445666662  23444332     2788999888765

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=98.85  E-value=9.7e-10  Score=83.82  Aligned_cols=78  Identities=17%  Similarity=0.103  Sum_probs=63.1

Q ss_pred             CCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhHhHHHHh
Q 021201            7 NRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQAVKKV   86 (316)
Q Consensus         7 ~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~~~v~~l   86 (316)
                      .||+|||+|+.+||.++.+||+.  .++.    ++.+|+.|-|||--|++.||.+++++|-                   
T Consensus        33 ggR~plhyAAD~GQl~ilefli~--iGA~----i~~kDKygITPLLsAvwEGH~~cVklLL-------------------   87 (117)
T KOG4214|consen   33 GGRTPLHYAADYGQLSILEFLIS--IGAN----IQDKDKYGITPLLSAVWEGHRDCVKLLL-------------------   87 (117)
T ss_pred             CCcccchHhhhcchHHHHHHHHH--hccc----cCCccccCCcHHHHHHHHhhHHHHHHHH-------------------
Confidence            59999999999999999999999  7775    7999999999999999999988877651                   


Q ss_pred             ccchhhhhhccCCCCccccccch
Q 021201           87 VPRKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        87 v~~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                      -.+++...+-.+|.+..+...++
T Consensus        88 ~~GAdrt~~~PdG~~~~eate~e  110 (117)
T KOG4214|consen   88 QNGADRTIHAPDGTALIEATEEE  110 (117)
T ss_pred             HcCcccceeCCCchhHHhhccHH
Confidence            12345556667777776655443

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=98.84  E-value=1.4e-09  Score=98.54  Aligned_cols=57  Identities=19%  Similarity=0.176  Sum_probs=48.4

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCcc
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRL   63 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v   63 (316)
                      ||..|.-..||||+|+.+||.+||..|++  ..++    +|+.++.||||||+|+.-|...+.
T Consensus        60 vn~tnmgddtplhlaaahghrdivqkll~--~kad----vnavnehgntplhyacfwgydqia  116 (448)
T KOG0195|consen   60 VNSTNMGDDTPLHLAAAHGHRDIVQKLLS--RKAD----VNAVNEHGNTPLHYACFWGYDQIA  116 (448)
T ss_pred             cccccCCCCcchhhhhhcccHHHHHHHHH--Hhcc----cchhhccCCCchhhhhhhcHHHHH
Confidence            45667778899999999999999999998  6654    799999999999999999885544

>PHA03095 ankyrin-like protein; Provisional

Probab=98.83  E-value=1.6e-09  Score=106.72  Aligned_cols=103  Identities=17%  Similarity=0.169  Sum_probs=76.4

Q ss_pred             CccccCCCCcHHhHHHHCC---CHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCC-CCccccc--cCc-----
Q 021201            1 MWKCDENRYTIFHIAVSNR---QVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAP-PDRLNVV--SGS-----   69 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~---~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~-~~~v~~L--~ga-----   69 (316)
                      ++.+|..|+||||+|+.++   +.+++++|++  .|++    +|.+|.+|+||||+|+..++ .+++++|  .|+     
T Consensus        40 vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~--~Gad----in~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~  113 (471)
T PHA03095         40 VNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLE--AGAD----VNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAK  113 (471)
T ss_pred             cccCCCCCCCHHHHHHHhcCCChHHHHHHHHH--CCCC----CCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCC
Confidence            3567889999999999998   9999999999  7764    79999999999999999994 6766665  333     


Q ss_pred             ------hHHhHHH--hhhHhHHHHhcc-chhhhhhccCCCCccccccch
Q 021201           70 ------ALQMQRE--LLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        70 ------al~~~~e--l~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                            +++....  ....+.++.++. +.+++.+|.+|.||++++...
T Consensus       114 ~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~  162 (471)
T PHA03095        114 DKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKS  162 (471)
T ss_pred             CCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence                  3333321  112334555543 467888999999999976543

>PHA02875 ankyrin repeat protein; Provisional

Probab=98.83  E-value=2.9e-09  Score=103.41  Aligned_cols=102  Identities=17%  Similarity=0.096  Sum_probs=80.3

Q ss_pred             ccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cC-----------
Q 021201            2 WKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SG-----------   68 (316)
Q Consensus         2 ~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~g-----------   68 (316)
                      +.++.+|.||||+|+.+|+.+++++|++  .++.    .+.+|.+|.||||.|+..|+.+.++.+  .|           
T Consensus        29 n~~~~~g~tpL~~A~~~~~~~~v~~Ll~--~ga~----~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g  102 (413)
T PHA02875         29 NFEIYDGISPIKLAMKFRDSEAIKLLMK--HGAI----PDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDG  102 (413)
T ss_pred             CccCCCCCCHHHHHHHcCCHHHHHHHHh--CCCC----ccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCC
Confidence            4567789999999999999999999999  7653    577889999999999999998877654  11           


Q ss_pred             -chHHhHHHhhhHhHHHHhcc-chhhhhhccCCCCccccccch
Q 021201           69 -SALQMQRELLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        69 -aal~~~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                       .+++.....+..+.++.++. +++++.+|.+|.||++++...
T Consensus       103 ~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~  145 (413)
T PHA02875        103 MTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMM  145 (413)
T ss_pred             CCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHc
Confidence             34555555555666776664 467888999999999988654

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=98.83  E-value=4.1e-10  Score=78.87  Aligned_cols=49  Identities=27%  Similarity=0.338  Sum_probs=27.4

Q ss_pred             hcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhHhHHHHhccchhhhhhccCCCCccccc
Q 021201           39 LVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQAVKKVVPRKLAEAKNKKGLTPRALF  106 (316)
Q Consensus        39 lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~~~v~~lv~~~~~~~~N~~G~Tp~~l~  106 (316)
                      .+|.+|.+|+||||+|++.|+.++++.|                   +-.+.+.+.+|++|+||+|++
T Consensus         8 ~~n~~d~~G~T~LH~A~~~g~~~~v~~L-------------------l~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    8 DVNAQDKYGNTPLHWAARYGHSEVVRLL-------------------LQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -TT---TTS--HHHHHHHHT-HHHHHHH-------------------HHCT--TT---TTS--HHHH-
T ss_pred             CCcCcCCCCCcHHHHHHHcCcHHHHHHH-------------------HHCcCCCCCCcCCCCCHHHhC
Confidence            3799999999999999999997766544                   123578899999999999875

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=98.81  E-value=1.4e-09  Score=115.00  Aligned_cols=102  Identities=26%  Similarity=0.320  Sum_probs=74.9

Q ss_pred             ccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cCc----------
Q 021201            2 WKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SGS----------   69 (316)
Q Consensus         2 ~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~ga----------   69 (316)
                      +.++.+|.||||+|+.+|+.++|++|++  ++++    ++++|+.|.||||.|+..|+.+++.+|  +|+          
T Consensus       534 ~~~~~r~~TpLh~A~~~g~v~~VkfLLe--~gAd----v~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~  607 (1143)
T KOG4177|consen  534 DLRTGRGYTPLHVAVHYGNVDLVKFLLE--HGAD----VNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGF  607 (1143)
T ss_pred             ehhcccccchHHHHHhcCCchHHHHhhh--CCcc----ccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCc
Confidence            4567889999999999999999999999  8875    799999999999999999998887776  343          


Q ss_pred             -hHHhHHHhhhHhHHHHhcc-chh-----hhhhccCCCCccccccch
Q 021201           70 -ALQMQRELLWFQAVKKVVP-RKL-----AEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        70 -al~~~~el~w~~~v~~lv~-~~~-----~~~~N~~G~Tp~~l~~~~  109 (316)
                       ++.....+..++.++.+.. ...     ...+|..|.+|.++..+.
T Consensus       608 TpL~iA~~lg~~~~~k~l~~~~~~~~~~~~~~e~~~g~~p~~v~e~~  654 (1143)
T KOG4177|consen  608 TPLHIAVRLGYLSVVKLLKVVTATPAATDPVKENRKGAVPEDVAEEL  654 (1143)
T ss_pred             chhHHHHHhcccchhhHHHhccCccccccchhhhhcccChhhHHHHh
Confidence             2334444444444443321 112     455667777777776654

>PHA02876 ankyrin repeat protein; Provisional

Probab=98.80  E-value=4.1e-09  Score=109.04  Aligned_cols=59  Identities=15%  Similarity=0.074  Sum_probs=50.3

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCcccc
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNV   65 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~   65 (316)
                      ++.+|..|+||||+|+++|+.++|++|++  .|++    +|..|.+|.||||+|+..++.+.++.
T Consensus       171 vn~~d~~G~TpLh~Aa~~G~~~iv~~LL~--~Gad----~n~~~~~g~t~L~~A~~~~~~~ivk~  229 (682)
T PHA02876        171 VNAKDIYCITPIHYAAERGNAKMVNLLLS--YGAD----VNIIALDDLSVLECAVDSKNIDTIKA  229 (682)
T ss_pred             CCCCCCCCCCHHHHHHHCCCHHHHHHHHH--CCCC----cCccCCCCCCHHHHHHHcCCHHHHHH
Confidence            46788999999999999999999999999  7764    67888889999999988887766544

>PHA02743 Viral ankyrin protein; Provisional

Probab=98.80  E-value=3.8e-09  Score=90.35  Aligned_cols=61  Identities=16%  Similarity=0.270  Sum_probs=50.2

Q ss_pred             Ccccc-CCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc
Q 021201            1 MWKCD-ENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV   66 (316)
Q Consensus         1 i~~~D-~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L   66 (316)
                      ++.+| ..|+||||+|+.+++.+++++|++. .+.+    ++.+|.+|+||||+|+..++.+++++|
T Consensus        86 in~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~-~gad----~~~~d~~g~tpL~~A~~~~~~~iv~~L  147 (166)
T PHA02743         86 INARELGTGNTLLHIAASTKNYELAEWLCRQ-LGVN----LGAINYQHETAYHIAYKMRDRRMMEIL  147 (166)
T ss_pred             CCCCCCCCCCcHHHHHHHhCCHHHHHHHHhc-cCCC----ccCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence            45677 4899999999999999999999941 3443    688999999999999999987665544

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=98.76  E-value=4.5e-09  Score=108.70  Aligned_cols=79  Identities=15%  Similarity=0.192  Sum_probs=63.5

Q ss_pred             ccc-cCCCCcHHhHHHHC--CCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCC--CccccccCchHHhHHH
Q 021201            2 WKC-DENRYTIFHIAVSN--RQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPP--DRLNVVSGSALQMQRE   76 (316)
Q Consensus         2 ~~~-D~~G~T~LH~Av~~--~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~--~~v~~L~gaal~~~~e   76 (316)
                      +.+ |..|+||||.|+.+  ++.+++++|++  .+++    +|.+|.+|+||||+|+..|+.  +++             
T Consensus       170 N~~~d~~G~TpLH~A~~n~~~~~eIVklLLe--~GAD----VN~kD~~G~TPLH~Aa~~g~~~~eIV-------------  230 (764)
T PHA02716        170 NYVCKKTGYGILHAYLGNMYVDIDILEWLCN--NGVN----VNLQNNHLITPLHTYLITGNVCASVI-------------  230 (764)
T ss_pred             ccccCCCCCcHHHHHHHhccCCHHHHHHHHH--cCCC----CCCCCCCCCCHHHHHHHcCCCCHHHH-------------
Confidence            455 78899999998754  67899999999  7764    799999999999999999863  333             


Q ss_pred             hhhHhHHHHhc-cchhhhhhccCCCCccccc
Q 021201           77 LLWFQAVKKVV-PRKLAEAKNKKGLTPRALF  106 (316)
Q Consensus        77 l~w~~~v~~lv-~~~~~~~~N~~G~Tp~~l~  106 (316)
                             +.++ .+++++.+|.+|+||++.+
T Consensus       231 -------klLLe~GADVN~kD~~G~TPLh~A  254 (764)
T PHA02716        231 -------KKIIELGGDMDMKCVNGMSPIMTY  254 (764)
T ss_pred             -------HHHHHcCCCCCCCCCCCCCHHHHH
Confidence                   3333 3567889999999999865

>PHA02917 ankyrin-like protein; Provisional

Probab=98.76  E-value=5e-09  Score=107.86  Aligned_cols=99  Identities=11%  Similarity=-0.047  Sum_probs=74.4

Q ss_pred             ccccCCCCcHHhHHHHC---CCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCcc----ccc--c-C---
Q 021201            2 WKCDENRYTIFHIAVSN---RQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRL----NVV--S-G---   68 (316)
Q Consensus         2 ~~~D~~G~T~LH~Av~~---~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v----~~L--~-g---   68 (316)
                      +.+|.+|+||||+|++.   |+.+++++|++  .+++    ++.+|.+|+||||.|+..|+.+++    +.+  . |   
T Consensus        26 ~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~--~ga~----v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n   99 (661)
T PHA02917         26 DTRNQFKNNALHAYLFNEHCNNVEVVKLLLD--SGTN----PLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSN   99 (661)
T ss_pred             cccCCCCCcHHHHHHHhhhcCcHHHHHHHHH--CCCC----ccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCC
Confidence            45689999999998655   88999999999  7764    689999999999999999985543    222  1 2   


Q ss_pred             -----chHHhHHHhhhHhHHHHhc-cchhhhhhccCCCCccccc
Q 021201           69 -----SALQMQRELLWFQAVKKVV-PRKLAEAKNKKGLTPRALF  106 (316)
Q Consensus        69 -----aal~~~~el~w~~~v~~lv-~~~~~~~~N~~G~Tp~~l~  106 (316)
                           ..+.+..+-...+.|+.++ .+.+++.+|.+|.||++.+
T Consensus       100 ~~~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~  143 (661)
T PHA02917        100 INDFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENY  143 (661)
T ss_pred             CCCcchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHH
Confidence                 1122333334456677776 4588999999999999854

>PHA02798 ankyrin-like protein; Provisional

Probab=98.74  E-value=3.5e-09  Score=105.42  Aligned_cols=53  Identities=15%  Similarity=0.103  Sum_probs=45.9

Q ss_pred             CccccCCCCcHHhHHHHC-----CCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCC
Q 021201            1 MWKCDENRYTIFHIAVSN-----RQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAP   59 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~-----~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~   59 (316)
                      ++.+|..|+||||.|+.+     ++.+++++|++  .|++    +|.+|.+|+||||+|+..+.
T Consensus        64 vn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~--~Gad----iN~~d~~G~TpLh~a~~~~~  121 (489)
T PHA02798         64 VNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIE--NGAD----INKKNSDGETPLYCLLSNGY  121 (489)
T ss_pred             CCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHH--CCCC----CCCCCCCcCcHHHHHHHcCC
Confidence            467889999999999875     66899999999  7764    79999999999999998764

>PHA03100 ankyrin repeat protein; Provisional

Probab=98.74  E-value=7.9e-09  Score=102.07  Aligned_cols=102  Identities=24%  Similarity=0.201  Sum_probs=77.3

Q ss_pred             ccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCC------ChHHHHHhhhCC--CCccccc--cC---
Q 021201            2 WKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEG------NNILHLAGKLAP--PDRLNVV--SG---   68 (316)
Q Consensus         2 ~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~G------nTpLHlAa~~~~--~~~v~~L--~g---   68 (316)
                      +.+|..|+||||+|+++|+.+++++|++  .+++    ++..|..|      .||||.|+..++  .+.++.|  .|   
T Consensus       170 n~~d~~g~tpL~~A~~~~~~~iv~~Ll~--~ga~----~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~di  243 (480)
T PHA03100        170 NAKNRYGYTPLHIAVEKGNIDVIKFLLD--NGAD----INAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPI  243 (480)
T ss_pred             ccccCCCCCHHHHHHHhCCHHHHHHHHH--cCCC----ccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCC
Confidence            5678899999999999999999999999  6654    57788888      889999998888  6665544  22   


Q ss_pred             --------chHHhHHHhhhHhHHHHhcc-chhhhhhccCCCCccccccch
Q 021201           69 --------SALQMQRELLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        69 --------aal~~~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                              .+++.....+..+.++.++. +++++.+|.+|+||++++...
T Consensus       244 n~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~  293 (480)
T PHA03100        244 NIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILN  293 (480)
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHh
Confidence                    34444444444555666554 468899999999999988654

>PHA02876 ankyrin repeat protein; Provisional

Probab=98.72  E-value=8.2e-09  Score=106.82  Aligned_cols=103  Identities=20%  Similarity=0.144  Sum_probs=75.7

Q ss_pred             CccccCCCCcHHhHHHHC-CCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cCc--------
Q 021201            1 MWKCDENRYTIFHIAVSN-RQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SGS--------   69 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~-~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~ga--------   69 (316)
                      ++..|..|+||||+|+.. ++.+++++|++  .+++    +|.+|.+|+||||+|+..++.++++.|  .|+        
T Consensus       334 in~~d~~g~TpLh~A~~~~~~~~iv~lLl~--~gad----in~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~  407 (682)
T PHA02876        334 VNAADRLYITPLHQASTLDRNKDIVITLLE--LGAN----VNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQK  407 (682)
T ss_pred             CCCcccCCCcHHHHHHHhCCcHHHHHHHHH--cCCC----CccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCC
Confidence            356788999999999985 56889999998  6654    789999999999999999998877765  232        


Q ss_pred             ---hHHhHHHhh-hHhHHHHhc-cchhhhhhccCCCCccccccch
Q 021201           70 ---ALQMQRELL-WFQAVKKVV-PRKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        70 ---al~~~~el~-w~~~v~~lv-~~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                         +++...... ....++.++ .+.+++.+|.+|+||++++...
T Consensus       408 g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~  452 (682)
T PHA02876        408 IGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKK  452 (682)
T ss_pred             CCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHh
Confidence               333322111 122344444 3567899999999999998754

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=98.71  E-value=6.6e-09  Score=107.50  Aligned_cols=101  Identities=13%  Similarity=-0.004  Sum_probs=71.1

Q ss_pred             CccccCCCCcHHhHHHHCCC--HHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhh---hCCCCcccccc--C-----
Q 021201            1 MWKCDENRYTIFHIAVSNRQ--VELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGK---LAPPDRLNVVS--G-----   68 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~--~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~---~~~~~~v~~L~--g-----   68 (316)
                      ++.+|.+|+||||+|+++|+  .+++++|++  .|++    +|.+|.+|+||||.|+.   .++.++++.+-  +     
T Consensus       205 VN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe--~GAD----VN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~  278 (764)
T PHA02716        205 VNLQNNHLITPLHTYLITGNVCASVIKKIIE--LGGD----MDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKV  278 (764)
T ss_pred             CCCCCCCCCCHHHHHHHcCCCCHHHHHHHHH--cCCC----CCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhcccccc
Confidence            46789999999999999995  489999999  8775    79999999999999864   34444444330  0     


Q ss_pred             ---c-hHH---hHHHhhhHhHHHHhcc-chhhhhhccCCCCcccccc
Q 021201           69 ---S-ALQ---MQRELLWFQAVKKVVP-RKLAEAKNKKGLTPRALFS  107 (316)
Q Consensus        69 ---a-al~---~~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~  107 (316)
                         + .+.   ...+-+..+.++.++. +.+++.+|.+|+||++.+.
T Consensus       279 ~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aa  325 (764)
T PHA02716        279 KNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYI  325 (764)
T ss_pred             ccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHH
Confidence               0 000   0111223455666554 4678889999999999754

>PHA02989 ankyrin repeat protein; Provisional

Probab=98.69  E-value=9.2e-09  Score=102.57  Aligned_cols=60  Identities=20%  Similarity=0.276  Sum_probs=54.4

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV   66 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L   66 (316)
                      ++.+|..|+||||+|+++|+.+++++|++  .|++    +|.+|.+|+||||+|+..++.++++.+
T Consensus       249 vn~~d~~G~TpL~~Aa~~~~~~~v~~LL~--~Gad----in~~d~~G~TpL~~A~~~~~~~iv~~L  308 (494)
T PHA02989        249 INKKDKKGFNPLLISAKVDNYEAFNYLLK--LGDD----IYNVSKDGDTVLTYAIKHGNIDMLNRI  308 (494)
T ss_pred             CCCCCCCCCCHHHHHHHhcCHHHHHHHHH--cCCC----ccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            46789999999999999999999999999  7765    799999999999999999998877655

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.69  E-value=3.9e-09  Score=101.17  Aligned_cols=58  Identities=19%  Similarity=0.251  Sum_probs=47.2

Q ss_pred             cccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc
Q 021201            3 KCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV   66 (316)
Q Consensus         3 ~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L   66 (316)
                      -.|..|+|.||+|+..||.+|+++|++  .+++    +|.++..|||+||.+|..|+.+++++|
T Consensus       145 IanrhGhTcLmIa~ykGh~~I~qyLle--~gAD----vn~ks~kGNTALH~caEsG~vdivq~L  202 (615)
T KOG0508|consen  145 IANRHGHTCLMIACYKGHVDIAQYLLE--QGAD----VNAKSYKGNTALHDCAESGSVDIVQLL  202 (615)
T ss_pred             ccccCCCeeEEeeeccCchHHHHHHHH--hCCC----cchhcccCchHHHhhhhcccHHHHHHH
Confidence            457788888888888888888888888  6654    788888888888888888887776655

>PHA02736 Viral ankyrin protein; Provisional

Probab=98.69  E-value=1.1e-08  Score=85.91  Aligned_cols=60  Identities=15%  Similarity=0.069  Sum_probs=50.3

Q ss_pred             Ccccc-CCCCcHHhHHHHCCCHHHHHHHhhcch-hhhhhhhcccCCCCCChHHHHHhhhCCCCccccc
Q 021201            1 MWKCD-ENRYTIFHIAVSNRQVELFKFIDADDM-KAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV   66 (316)
Q Consensus         1 i~~~D-~~G~T~LH~Av~~~~~~iv~~Ll~~~~-~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L   66 (316)
                      ++.+| .+|+||||+|+++++.+++++|++  . +.    .+|.+|..|.||||+|+..++.+++++|
T Consensus        84 in~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~--~~g~----d~n~~~~~g~tpL~~A~~~~~~~i~~~L  145 (154)
T PHA02736         84 INGKERVFGNTPLHIAVYTQNYELATWLCN--QPGV----NMEILNYAFKTPYYVACERHDAKMMNIL  145 (154)
T ss_pred             ccccCCCCCCcHHHHHHHhCCHHHHHHHHh--CCCC----CCccccCCCCCHHHHHHHcCCHHHHHHH
Confidence            35666 489999999999999999999997  3 33    2689999999999999999987766544

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=98.68  E-value=1.7e-08  Score=87.47  Aligned_cols=86  Identities=22%  Similarity=0.236  Sum_probs=68.3

Q ss_pred             ccccCCCCcHHhHHHHCCC-----HHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHH
Q 021201            2 WKCDENRYTIFHIAVSNRQ-----VELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRE   76 (316)
Q Consensus         2 ~~~D~~G~T~LH~Av~~~~-----~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~e   76 (316)
                      +.+|..|.|+||+|+.+++     .+++++|++  .++..+ ..+.+|.+|+||||+|+..|+.+.+..+          
T Consensus       100 ~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~--~g~~~~-~~~~~~~~g~tpl~~A~~~~~~~~~~~l----------  166 (235)
T COG0666         100 NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLE--AGADLD-VNNLRDEDGNTPLHWAALNGDADIVELL----------  166 (235)
T ss_pred             ccccCCCCcHHHHHHhcCCcccchHHHHHHHHH--cCCCCC-CccccCCCCCchhHHHHHcCchHHHHHH----------
Confidence            5689999999999999999     999999999  665100 2577899999999999999997554333          


Q ss_pred             hhhHhHHHHhccchhhhhhccCCCCccccccch
Q 021201           77 LLWFQAVKKVVPRKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        77 l~w~~~v~~lv~~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                               +-.+...+.+|..|.|+++.+...
T Consensus       167 ---------l~~~~~~~~~~~~g~t~l~~a~~~  190 (235)
T COG0666         167 ---------LEAGADPNSRNSYGVTALDPAAKN  190 (235)
T ss_pred             ---------HhcCCCCcccccCCCcchhhhccc
Confidence                     112456677899999999987765

>PHA02795 ankyrin-like protein; Provisional

Probab=98.67  E-value=1.1e-08  Score=99.49  Aligned_cols=53  Identities=17%  Similarity=0.174  Sum_probs=48.5

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCC
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAP   59 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~   59 (316)
                      |+.+|..|+||||+|+.+|+.+++++|++  .|++    +|.+|.+|+||||+|+..|+
T Consensus       214 IN~kD~~G~TpLh~Aa~~g~~eiVelLL~--~GAd----IN~~d~~G~TpLh~Aa~~g~  266 (437)
T PHA02795        214 INQLDAGGRTLLYRAIYAGYIDLVSWLLE--NGAN----VNAVMSNGYTCLDVAVDRGS  266 (437)
T ss_pred             cCcCCCCCCCHHHHHHHcCCHHHHHHHHH--CCCC----CCCcCCCCCCHHHHHHHcCC
Confidence            57789999999999999999999999999  7764    79999999999999999885

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=98.67  E-value=1.6e-08  Score=104.37  Aligned_cols=60  Identities=22%  Similarity=0.195  Sum_probs=54.0

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV   66 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L   66 (316)
                      ++.+|.+|+||||+|+.+|+.+++++|++  .+++    +|.+|.+|+||||+|+..++.+++++|
T Consensus       108 in~~d~~G~TpLh~Aa~~g~~eiv~~LL~--~Gad----vn~~d~~G~TpLh~A~~~g~~~iv~~L  167 (664)
T PTZ00322        108 PNCRDYDGRTPLHIACANGHVQVVRVLLE--FGAD----PTLLDKDGKTPLELAEENGFREVVQLL  167 (664)
T ss_pred             CCCcCCCCCcHHHHHHHCCCHHHHHHHHH--CCCC----CCCCCCCCCCHHHHHHHCCcHHHHHHH
Confidence            46789999999999999999999999999  7764    689999999999999999998877665

>PHA02795 ankyrin-like protein; Provisional

Probab=98.67  E-value=7.2e-09  Score=100.90  Aligned_cols=76  Identities=16%  Similarity=0.111  Sum_probs=54.6

Q ss_pred             CCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhHhHHHHhc
Q 021201            8 RYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQAVKKVV   87 (316)
Q Consensus         8 G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~~~v~~lv   87 (316)
                      |.|++|.|.++++.+++++|++  .+++    +|.+|.+|+||||+|+..|+.+.++.|                    +
T Consensus       188 ~~t~l~~a~~~~~~eIve~LIs--~GAD----IN~kD~~G~TpLh~Aa~~g~~eiVelL--------------------L  241 (437)
T PHA02795        188 QYTRGFLVDEPTVLEIYKLCIP--YIED----INQLDAGGRTLLYRAIYAGYIDLVSWL--------------------L  241 (437)
T ss_pred             ccchhHHHHhcCHHHHHHHHHh--CcCC----cCcCCCCCCCHHHHHHHcCCHHHHHHH--------------------H
Confidence            5556666666666666666666  5543    678888888888888888876655443                    2


Q ss_pred             -cchhhhhhccCCCCccccccch
Q 021201           88 -PRKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        88 -~~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                       .+++++.+|.+|.||++++...
T Consensus       242 ~~GAdIN~~d~~G~TpLh~Aa~~  264 (437)
T PHA02795        242 ENGANVNAVMSNGYTCLDVAVDR  264 (437)
T ss_pred             HCCCCCCCcCCCCCCHHHHHHHc
Confidence             3567899999999999998754

>PHA02884 ankyrin repeat protein; Provisional

Probab=98.64  E-value=1.5e-08  Score=94.62  Aligned_cols=56  Identities=11%  Similarity=0.015  Sum_probs=44.0

Q ss_pred             cCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCC-CCCChHHHHHhhhCCCCccccc
Q 021201            5 DENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTD-GEGNNILHLAGKLAPPDRLNVV   66 (316)
Q Consensus         5 D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D-~~GnTpLHlAa~~~~~~~v~~L   66 (316)
                      |..|+||||+|+++++.+++++|++  .|++    +|.+| ..|+||||+|+..++.+.++++
T Consensus        67 d~~g~TpLh~Aa~~~~~eivklLL~--~GAD----VN~~~~~~g~TpLh~Aa~~~~~eivklL  123 (300)
T PHA02884         67 ENSKTNPLIYAIDCDNDDAAKLLIR--YGAD----VNRYAEEAKITPLYISVLHGCLKCLEIL  123 (300)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHH--cCCC----cCcccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            4578888888888888888888888  7764    67764 5788888888888887776665

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=98.63  E-value=3.6e-08  Score=77.57  Aligned_cols=58  Identities=31%  Similarity=0.410  Sum_probs=49.5

Q ss_pred             cccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc
Q 021201            3 KCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV   66 (316)
Q Consensus         3 ~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L   66 (316)
                      .+|.+|+||||+|+++++.+++++|++  .+..    .+..|..|.||||.|+..++.+.++.+
T Consensus         2 ~~~~~g~t~l~~a~~~~~~~~i~~li~--~~~~----~~~~~~~g~~~l~~a~~~~~~~~~~~l   59 (126)
T cd00204           2 ARDEDGRTPLHLAASNGHLEVVKLLLE--NGAD----VNAKDNDGRTPLHLAAKNGHLEIVKLL   59 (126)
T ss_pred             CcCcCCCCHHHHHHHcCcHHHHHHHHH--cCCC----CCccCCCCCcHHHHHHHcCCHHHHHHH
Confidence            467889999999999999999999999  6643    378999999999999999887655443

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PHA02798 ankyrin-like protein; Provisional

Probab=98.63  E-value=1.8e-08  Score=100.34  Aligned_cols=60  Identities=17%  Similarity=0.201  Sum_probs=54.2

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV   66 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L   66 (316)
                      |+.+|..|+||||+|+.+|+.+++++|++  .|++    +|.+|.+|+||||+|+..++.++++.+
T Consensus       251 vN~~d~~G~TPL~~A~~~~~~~~v~~LL~--~GAd----in~~d~~G~TpL~~A~~~~~~~iv~~l  310 (489)
T PHA02798        251 INQVDELGFNPLYYSVSHNNRKIFEYLLQ--LGGD----INIITELGNTCLFTAFENESKFIFNSI  310 (489)
T ss_pred             CCCcCcCCccHHHHHHHcCcHHHHHHHHH--cCCc----ccccCCCCCcHHHHHHHcCcHHHHHHH
Confidence            46789999999999999999999999999  7775    799999999999999999987776654

>PHA02989 ankyrin repeat protein; Provisional

Probab=98.61  E-value=2.6e-08  Score=99.35  Aligned_cols=60  Identities=17%  Similarity=0.228  Sum_probs=39.6

Q ss_pred             CccccCCCCcHHhHHHHC---CCHHHHHHHhhcchhhhhhhhc-ccCCCCCChHHHHHhhh--CCCCccccc
Q 021201            1 MWKCDENRYTIFHIAVSN---RQVELFKFIDADDMKAIADLLV-DSTDGEGNNILHLAGKL--APPDRLNVV   66 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~---~~~~iv~~Ll~~~~~~~~~~li-n~~D~~GnTpLHlAa~~--~~~~~v~~L   66 (316)
                      ++.+|.+|+||||.|+.+   ++.+++++|++  .|++    + +.+|.+|+||||+|+..  ++.++++.|
T Consensus       101 in~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~--~Gad----in~~~d~~g~tpLh~a~~~~~~~~~iv~~L  166 (494)
T PHA02989        101 INLKTFNGVSPIVCFIYNSNINNCDMLRFLLS--KGIN----VNDVKNSRGYNLLHMYLESFSVKKDVIKIL  166 (494)
T ss_pred             CCCCCCCCCcHHHHHHHhcccCcHHHHHHHHH--CCCC----cccccCCCCCCHHHHHHHhccCCHHHHHHH
Confidence            456677778888777655   46777788877  6653    5 56777777777777643  344444443

>PHA02917 ankyrin-like protein; Provisional

Probab=98.59  E-value=2.4e-08  Score=102.87  Aligned_cols=82  Identities=10%  Similarity=0.070  Sum_probs=64.2

Q ss_pred             ccccCCCCcHHhHHHHCCC-----------------------HHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhC
Q 021201            2 WKCDENRYTIFHIAVSNRQ-----------------------VELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLA   58 (316)
Q Consensus         2 ~~~D~~G~T~LH~Av~~~~-----------------------~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~   58 (316)
                      .+.|++|+||||.|++.++                       .+++++|++  ++++    +|.+|.+|+||||+|+..+
T Consensus       390 ~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~--~GAd----IN~kd~~G~TpLh~Aa~~~  463 (661)
T PHA02917        390 VNHLDDGEIPIGHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLP--YLKD----INMIDKRGETLLHKAVRYN  463 (661)
T ss_pred             cccCCCCCChhHHHHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHHHH--CCCC----CCCCCCCCcCHHHHHHHcC
Confidence            4567789999999985433                       467799999  7764    7999999999999999988


Q ss_pred             CCCccccccCchHHhHHHhhhHhHHHHhccchhhhhhccCCCCccccccc
Q 021201           59 PPDRLNVVSGSALQMQRELLWFQAVKKVVPRKLAEAKNKKGLTPRALFSE  108 (316)
Q Consensus        59 ~~~~v~~L~gaal~~~~el~w~~~v~~lv~~~~~~~~N~~G~Tp~~l~~~  108 (316)
                      +.+.++.|                   +-.+++++.+|..|+||++++..
T Consensus       464 ~~~~v~~L-------------------l~~GAdin~~d~~G~T~L~~A~~  494 (661)
T PHA02917        464 KQSLVSLL-------------------LESGSDVNIRSNNGYTCIAIAIN  494 (661)
T ss_pred             CHHHHHHH-------------------HHCcCCCCCCCCCCCCHHHHHHH
Confidence            75554333                   11346789999999999998874

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=98.57  E-value=6.2e-08  Score=101.32  Aligned_cols=98  Identities=19%  Similarity=0.216  Sum_probs=67.8

Q ss_pred             CCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCC--------------CCCChHHHHHhhhCCCCccccc--cCc
Q 021201            6 ENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTD--------------GEGNNILHLAGKLAPPDRLNVV--SGS   69 (316)
Q Consensus         6 ~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D--------------~~GnTpLHlAa~~~~~~~v~~L--~ga   69 (316)
                      ..|+||||+|+.+|+.+++++|++  ++++    +|.++              ..|.||||+|+..++.+.++++  .|+
T Consensus       126 ~~G~TpLhlAa~~~~~eiVklLL~--~GAd----v~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~ga  199 (743)
T TIGR00870       126 TPGITALHLAAHRQNYEIVKLLLE--RGAS----VPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPA  199 (743)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHh--CCCC----CCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCc
Confidence            469999999999999999999999  6654    34332              3699999999999999988876  454


Q ss_pred             hHHhHHHhhhH-----------------------hHHHHhc-cchhh----hhhccCCCCccccccch
Q 021201           70 ALQMQRELLWF-----------------------QAVKKVV-PRKLA----EAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        70 al~~~~el~w~-----------------------~~v~~lv-~~~~~----~~~N~~G~Tp~~l~~~~  109 (316)
                      ..+.+.+.+|.                       +.+.... .....    +.+|++|.||++++.+.
T Consensus       200 din~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~  267 (743)
T TIGR00870       200 DILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKE  267 (743)
T ss_pred             chhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhc
Confidence            45444332221                       0011111 11122    67899999999988654

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=98.56  E-value=3.3e-08  Score=104.46  Aligned_cols=86  Identities=22%  Similarity=0.292  Sum_probs=57.0

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhh---------------------------hhhhcccCCCCCChHHHH
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAI---------------------------ADLLVDSTDGEGNNILHL   53 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~---------------------------~~~lin~~D~~GnTpLHl   53 (316)
                      ++.+|.+|+||||+|+.+|+.+++++|++  .+..                           ....+|.+|.+|+||||+
T Consensus       584 in~~d~~G~TpL~~A~~~g~~~iv~~L~~--~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~  661 (823)
T PLN03192        584 VHIRDANGNTALWNAISAKHHKIFRILYH--FASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQV  661 (823)
T ss_pred             CCCcCCCCCCHHHHHHHhCCHHHHHHHHh--cCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            46678899999998888888888887765  2210                           001246666666666666


Q ss_pred             HhhhCCCCccccccCchHHhHHHhhhHhHHHHhc-cchhhhhhccCC-CCccccccc
Q 021201           54 AGKLAPPDRLNVVSGSALQMQRELLWFQAVKKVV-PRKLAEAKNKKG-LTPRALFSE  108 (316)
Q Consensus        54 Aa~~~~~~~v~~L~gaal~~~~el~w~~~v~~lv-~~~~~~~~N~~G-~Tp~~l~~~  108 (316)
                      |+..|+.+++++|                    + .+++++.+|.+| .||.++...
T Consensus       662 A~~~g~~~iv~~L--------------------l~~GAdv~~~~~~g~~t~~~l~~~  698 (823)
T PLN03192        662 AMAEDHVDMVRLL--------------------IMNGADVDKANTDDDFSPTELREL  698 (823)
T ss_pred             HHHCCcHHHHHHH--------------------HHcCCCCCCCCCCCCCCHHHHHHH
Confidence            6666665544433                    3 346677888887 888877644

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=98.54  E-value=2.8e-08  Score=75.37  Aligned_cols=69  Identities=25%  Similarity=0.358  Sum_probs=53.5

Q ss_pred             HhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhHhHHHHhccchh
Q 021201           12 FHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQAVKKVVPRKL   91 (316)
Q Consensus        12 LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~~~v~~lv~~~~   91 (316)
                      ||+|+++|+.+++++|++  .+..    ++.    |+||||+|+..|+.++++.|                ++   .+.+
T Consensus         1 L~~A~~~~~~~~~~~ll~--~~~~----~~~----~~~~l~~A~~~~~~~~~~~L----------------l~---~g~~   51 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLE--KGAD----INL----GNTALHYAAENGNLEIVKLL----------------LE---NGAD   51 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHH--TTST----TTS----SSBHHHHHHHTTTHHHHHHH----------------HH---TTTC
T ss_pred             CHHHHHcCCHHHHHHHHH--CcCC----CCC----CCCHHHHHHHcCCHHHHHHH----------------HH---hccc
Confidence            799999999999999999  6532    232    99999999999997665444                11   2356


Q ss_pred             hhhhccCCCCccccccch
Q 021201           92 AEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        92 ~~~~N~~G~Tp~~l~~~~  109 (316)
                      ++.+|.+|.||++.+...
T Consensus        52 ~~~~~~~g~t~L~~A~~~   69 (89)
T PF12796_consen   52 INSQDKNGNTALHYAAEN   69 (89)
T ss_dssp             TT-BSTTSSBHHHHHHHT
T ss_pred             ccccCCCCCCHHHHHHHc
Confidence            788889999999987654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=98.51  E-value=7.2e-08  Score=102.39  Aligned_cols=60  Identities=22%  Similarity=0.252  Sum_probs=55.3

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV   66 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L   66 (316)
                      ++.+|+.|+||||.|+..|+.+++++|++  +|+.    +|+.|.+|+||||+|+..|+.+.++.+
T Consensus       566 v~ak~~~G~TPLH~Aa~~G~~~i~~LLlk--~GA~----vna~d~~g~TpL~iA~~lg~~~~~k~l  625 (1143)
T KOG4177|consen  566 VNAKDKLGYTPLHQAAQQGHNDIAELLLK--HGAS----VNAADLDGFTPLHIAVRLGYLSVVKLL  625 (1143)
T ss_pred             ccccCCCCCChhhHHHHcChHHHHHHHHH--cCCC----CCcccccCcchhHHHHHhcccchhhHH
Confidence            46789999999999999999999999999  8875    799999999999999999999887765

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.49  E-value=4.7e-08  Score=95.04  Aligned_cols=81  Identities=25%  Similarity=0.234  Sum_probs=67.5

Q ss_pred             cccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhHhH
Q 021201            3 KCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQA   82 (316)
Q Consensus         3 ~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~~~   82 (316)
                      ..+.+|.|.||+|+-+|..++.++|++  .+..    ++.+|.+|+||||.||.-|..+..++|                
T Consensus       193 ~~~~rG~T~lHvAaa~Gy~e~~~lLl~--ag~~----~~~~D~dgWtPlHAAA~Wg~~~~~elL----------------  250 (527)
T KOG0505|consen  193 ARHARGATALHVAAANGYTEVAALLLQ--AGYS----VNIKDYDGWTPLHAAAHWGQEDACELL----------------  250 (527)
T ss_pred             ccccccchHHHHHHhhhHHHHHHHHHH--hccC----cccccccCCCcccHHHHhhhHhHHHHH----------------
Confidence            345669999999999999999999999  7654    689999999999999999886654433                


Q ss_pred             HHHhccchhhhhhccCCCCccccccc
Q 021201           83 VKKVVPRKLAEAKNKKGLTPRALFSE  108 (316)
Q Consensus        83 v~~lv~~~~~~~~N~~G~Tp~~l~~~  108 (316)
                      +   ...++.+++++.|+||+|++.+
T Consensus       251 ~---~~ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  251 V---EHGADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             H---HhhcccchhhhcCCCCccchhh
Confidence            1   1346788999999999999876

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=98.45  E-value=6.2e-08  Score=93.95  Aligned_cols=57  Identities=23%  Similarity=0.284  Sum_probs=49.3

Q ss_pred             ccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc
Q 021201            4 CDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV   66 (316)
Q Consensus         4 ~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L   66 (316)
                      -|+.|-|+||-|+-.||.+||+||++  .+++    +|+.|.+|+||||.||.-++..+.+.|
T Consensus       579 pNdEGITaLHNAiCaghyeIVkFLi~--~gan----VNa~DSdGWTPLHCAASCNnv~~ckqL  635 (752)
T KOG0515|consen  579 PNDEGITALHNAICAGHYEIVKFLIE--FGAN----VNAADSDGWTPLHCAASCNNVPMCKQL  635 (752)
T ss_pred             CCccchhHHhhhhhcchhHHHHHHHh--cCCc----ccCccCCCCchhhhhhhcCchHHHHHH
Confidence            36789999999999999999999999  7765    899999999999999998775544433

>PHA02730 ankyrin-like protein; Provisional

Probab=98.43  E-value=1.5e-07  Score=96.10  Aligned_cols=83  Identities=12%  Similarity=0.024  Sum_probs=63.0

Q ss_pred             CccccCCCCcHHhH---HHHCC---------CHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccC
Q 021201            1 MWKCDENRYTIFHI---AVSNR---------QVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSG   68 (316)
Q Consensus         1 i~~~D~~G~T~LH~---Av~~~---------~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~g   68 (316)
                      ++.+|.+|+||||.   |..++         ..+++++|++  .+++    +|++|..|+||||+|+..++.+.++.|  
T Consensus       410 IN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs--~GAD----INakD~~G~TPLh~Aa~~~~~eive~L--  481 (672)
T PHA02730        410 INHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSK--YMDD----IDMIDNENKTLLYYAVDVNNIQFARRL--  481 (672)
T ss_pred             ccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHh--cccc----hhccCCCCCCHHHHHHHhCCHHHHHHH--
Confidence            45678899999994   44333         2257999999  8765    799999999999999999886554443  


Q ss_pred             chHHhHHHhhhHhHHHHhccchhhhhhcc-CCCCccccccc
Q 021201           69 SALQMQRELLWFQAVKKVVPRKLAEAKNK-KGLTPRALFSE  108 (316)
Q Consensus        69 aal~~~~el~w~~~v~~lv~~~~~~~~N~-~G~Tp~~l~~~  108 (316)
                                       +-.+++++.+|+ .|+||++.+..
T Consensus       482 -----------------I~~GAdIN~~d~~~g~TaL~~Aa~  505 (672)
T PHA02730        482 -----------------LEYGASVNTTSRSIINTAIQKSSY  505 (672)
T ss_pred             -----------------HHCCCCCCCCCCcCCcCHHHHHHH
Confidence                             113567888986 59999998764

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=98.41  E-value=7.9e-08  Score=96.76  Aligned_cols=60  Identities=27%  Similarity=0.269  Sum_probs=53.7

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV   66 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L   66 (316)
                      +|..|.+|-|+||.|+.+||.+++++|++  ..+.    ++..|.+|.+|||+||+.|+.++++.+
T Consensus        42 ~n~qd~~gfTalhha~Lng~~~is~llle--~ea~----ldl~d~kg~~plhlaaw~g~~e~vkml  101 (854)
T KOG0507|consen   42 HNLQDYSGFTLLHHAVLNGQNQISKLLLD--YEAL----LDLCDTKGILPLHLAAWNGNLEIVKML  101 (854)
T ss_pred             ccccCccchhHHHHHHhcCchHHHHHHhc--chhh----hhhhhccCcceEEehhhcCcchHHHHH
Confidence            47788999999999999999999999999  6653    578899999999999999999988765

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.41  E-value=6.1e-08  Score=90.44  Aligned_cols=110  Identities=19%  Similarity=0.203  Sum_probs=76.7

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCC-----cccccc--C-----
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPD-----RLNVVS--G-----   68 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~-----~v~~L~--g-----   68 (316)
                      ||--|.+|.|+|||||.+.+.+||+.|+.  .+.-   .+|.+++-|.||..||+...-..     +|..|.  |     
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLD--SgvC---~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaK  335 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLD--SGVC---DVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAK  335 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhc--cCcc---cccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchh
Confidence            45679999999999999999999999999  6643   47999999999999998754322     222221  1     


Q ss_pred             ------chHHhHHHhhhHhHHHHhcc-chhhhhhccCCCCccccccch-hhhhhh
Q 021201           69 ------SALQMQRELLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSEQ-HRDLKE  115 (316)
Q Consensus        69 ------aal~~~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~~-~~~l~~  115 (316)
                            .+|.+.-.=+..+.||.++. ++++|.+|.||-|++..+.+. |+++.+
T Consensus       336 AsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivk  390 (452)
T KOG0514|consen  336 ASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVK  390 (452)
T ss_pred             hhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHH
Confidence                  11111111122445665553 578999999999999988765 555544

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=98.39  E-value=1.6e-07  Score=79.70  Aligned_cols=83  Identities=16%  Similarity=0.003  Sum_probs=64.8

Q ss_pred             ccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhHh
Q 021201            2 WKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQ   81 (316)
Q Consensus         2 ~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~~   81 (316)
                      +++...|+||||-|++..+.+++.+|++  .+++    +|++.+.-.||||+||...+...-                  
T Consensus       124 ~a~T~~GWTPLhSAckWnN~~va~~LLq--hgaD----VnA~t~g~ltpLhlaa~~rn~r~t------------------  179 (228)
T KOG0512|consen  124 EAKTNEGWTPLHSACKWNNFEVAGRLLQ--HGAD----VNAQTKGLLTPLHLAAGNRNSRDT------------------  179 (228)
T ss_pred             ccccccCccchhhhhcccchhHHHHHHh--ccCc----ccccccccchhhHHhhcccchHHH------------------
Confidence            4677899999999999999999999999  7775    899999999999999987653210                  


Q ss_pred             HHHHhcc--chhhhhhccCCCCccccccch
Q 021201           82 AVKKVVP--RKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        82 ~v~~lv~--~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                       ++-++.  ......+|+.++||++++...
T Consensus       180 -~~~Ll~dryi~pg~~nn~eeta~~iARRT  208 (228)
T KOG0512|consen  180 -LELLLHDRYIHPGLKNNLEETAFDIARRT  208 (228)
T ss_pred             -HHHHhhccccChhhhcCccchHHHHHHHh
Confidence             111221  233467889999999998765

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=98.38  E-value=2.4e-07  Score=96.92  Aligned_cols=109  Identities=17%  Similarity=0.109  Sum_probs=72.8

Q ss_pred             CccccCCCCcHHh-HHHHCCCHHHHHHHhhcch-----------------hhhhhhh---------------ccc----C
Q 021201            1 MWKCDENRYTIFH-IAVSNRQVELFKFIDADDM-----------------KAIADLL---------------VDS----T   43 (316)
Q Consensus         1 i~~~D~~G~T~LH-~Av~~~~~~iv~~Ll~~~~-----------------~~~~~~l---------------in~----~   43 (316)
                      ++..|..|+|||| .|+++++.+++++|++.+.                 +....++               .+.    .
T Consensus        45 in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~  124 (743)
T TIGR00870        45 INCPDRLGRSALFVAAIENENLELTELLLNLSCRGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSE  124 (743)
T ss_pred             CCCcCccchhHHHHHHHhcChHHHHHHHHhCCCCCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccc
Confidence            3456788999999 8889999999999987331                 0000000               011    1


Q ss_pred             CCCCChHHHHHhhhCCCCccccc--cCchHH-------------------------hHHHhhhHhHHHHhc-cchhhhhh
Q 021201           44 DGEGNNILHLAGKLAPPDRLNVV--SGSALQ-------------------------MQRELLWFQAVKKVV-PRKLAEAK   95 (316)
Q Consensus        44 D~~GnTpLHlAa~~~~~~~v~~L--~gaal~-------------------------~~~el~w~~~v~~lv-~~~~~~~~   95 (316)
                      +..|.||||+|+..++.+++++|  .|+.++                         .....+..+.++.++ .+++++.+
T Consensus       125 ~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~  204 (743)
T TIGR00870       125 FTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTA  204 (743)
T ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhH
Confidence            24699999999999999988876  344332                         222333344455555 35678999


Q ss_pred             ccCCCCccccccch
Q 021201           96 NKKGLTPRALFSEQ  109 (316)
Q Consensus        96 N~~G~Tp~~l~~~~  109 (316)
                      |+.|.||++++..+
T Consensus       205 d~~g~T~Lh~A~~~  218 (743)
T TIGR00870       205 DSLGNTLLHLLVME  218 (743)
T ss_pred             hhhhhHHHHHHHhh
Confidence            99999999987654

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02792 ankyrin-like protein; Provisional

Probab=98.36  E-value=1.4e-07  Score=95.35  Aligned_cols=46  Identities=13%  Similarity=0.085  Sum_probs=26.7

Q ss_pred             CCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCC--ChHHHHHhhhCC
Q 021201            8 RYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEG--NNILHLAGKLAP   59 (316)
Q Consensus         8 G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~G--nTpLHlAa~~~~   59 (316)
                      +.+++|.|+.+|+.+++++|++  +|++    +|.+|.+|  .||||.|+....
T Consensus       339 ~~n~~~~Aa~~gn~eIVelLIs--~GAD----IN~kD~~g~~~TpLh~A~~n~~  386 (631)
T PHA02792        339 HINKYFQKFDNRDPKVVEYILK--NGNV----VVEDDDNIINIMPLFPTLSIHE  386 (631)
T ss_pred             cchHHHHHHHcCCHHHHHHHHH--cCCc----hhhhcCCCCChhHHHHHHHhcc
Confidence            4555666666666666666666  5543    45555553  466666554443

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=98.33  E-value=1.3e-07  Score=82.91  Aligned_cols=99  Identities=14%  Similarity=0.098  Sum_probs=61.8

Q ss_pred             ccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cCchHHh---HHH
Q 021201            2 WKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SGSALQM---QRE   76 (316)
Q Consensus         2 ~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~gaal~~---~~e   76 (316)
                      ++++--+++|+.+++...|.+++..+.+  +      .+|+.|+.|.|||.+|+.+|+...+++|  +|+..+.   -+|
T Consensus       123 nevs~~p~s~~slsVhql~L~~~~~~~~--n------~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~re  194 (296)
T KOG0502|consen  123 NEVSLMPWSPLSLSVHQLHLDVVDLLVN--N------KVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRE  194 (296)
T ss_pred             CccccccCChhhHHHHHHHHHHHHHHhh--c------cccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhh
Confidence            4556667777777777777666666655  3      2577777777777777777777777665  4543331   121


Q ss_pred             --------hhhHhHHHHhcc-chhhhhhccCCCCccccccc
Q 021201           77 --------LLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSE  108 (316)
Q Consensus        77 --------l~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~  108 (316)
                              -++.+.|+-++. ..++|..|-+|-||+-++..
T Consensus       195 sALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvr  235 (296)
T KOG0502|consen  195 SALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVR  235 (296)
T ss_pred             hhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeec
Confidence                    223444554443 35677788888888877654

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.31  E-value=6.6e-07  Score=55.47  Aligned_cols=33  Identities=18%  Similarity=0.255  Sum_probs=28.7

Q ss_pred             CCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCC
Q 021201            7 NRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDG   45 (316)
Q Consensus         7 ~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~   45 (316)
                      +|+||||+|+++|+.+++++|++  .+++    ++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~--~ga~----~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLK--HGAD----INARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHH--TTSC----TTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHH--CcCC----CCCCCC
Confidence            59999999999999999999999  7764    577664

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13606 Ank_3: Ankyrin repeat

Probab=98.24  E-value=9.2e-07  Score=53.77  Aligned_cols=26  Identities=35%  Similarity=0.475  Sum_probs=24.2

Q ss_pred             CCCcHHhHHHHCCCHHHHHHHhhcchhh
Q 021201            7 NRYTIFHIAVSNRQVELFKFIDADDMKA   34 (316)
Q Consensus         7 ~G~T~LH~Av~~~~~~iv~~Ll~~~~~~   34 (316)
                      +|+||||+|+++|+.|++++|++  +++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~--~ga   26 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLE--HGA   26 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHH--cCC
Confidence            59999999999999999999999  665

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.19  E-value=6.5e-07  Score=87.24  Aligned_cols=82  Identities=24%  Similarity=0.279  Sum_probs=67.5

Q ss_pred             ccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhHh
Q 021201            2 WKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQ   81 (316)
Q Consensus         2 ~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~~   81 (316)
                      +..|.+|.|+||=|+.-.+.++|+++++  ++++    +|++|++|+||||-|+.-|+..++.++               
T Consensus        67 ~~~n~DglTalhq~~id~~~e~v~~l~e--~ga~----Vn~~d~e~wtPlhaaascg~~~i~~~l---------------  125 (527)
T KOG0505|consen   67 NLCNVDGLTALHQACIDDNLEMVKFLVE--NGAN----VNAQDNEGWTPLHAAASCGYLNIVEYL---------------  125 (527)
T ss_pred             cccCCccchhHHHHHhcccHHHHHHHHH--hcCC----ccccccccCCcchhhcccccHHHHHHH---------------
Confidence            5678999999999999999999999999  7765    899999999999999999997765443               


Q ss_pred             HHHHhccchhhhhhccCCCCccccccc
Q 021201           82 AVKKVVPRKLAEAKNKKGLTPRALFSE  108 (316)
Q Consensus        82 ~v~~lv~~~~~~~~N~~G~Tp~~l~~~  108 (316)
                          +-.+++....|.+|..|.|+...
T Consensus       126 ----i~~gA~~~avNsdg~~P~dl~e~  148 (527)
T KOG0505|consen  126 ----IQHGANLLAVNSDGNMPYDLAED  148 (527)
T ss_pred             ----HHhhhhhhhccCCCCCccccccC
Confidence                11235666778888888877654

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.19  E-value=2.2e-07  Score=94.29  Aligned_cols=81  Identities=25%  Similarity=0.239  Sum_probs=64.4

Q ss_pred             ccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCC-CCChHHHHHhhhCCCCccccccCchHHhHHHhhhH
Q 021201            2 WKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDG-EGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWF   80 (316)
Q Consensus         2 ~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~-~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~   80 (316)
                      +.+|..|||+||+|+..++.++++.|++  +|.+    ++.+|+ .|.||||-|...|+.+++.+|-             
T Consensus        46 nikD~~GR~alH~~~S~~k~~~l~wLlq--hGid----v~vqD~ESG~taLHRaiyyG~idca~lLL-------------  106 (1267)
T KOG0783|consen   46 NIKDRYGRTALHIAVSENKNSFLRWLLQ--HGID----VFVQDEESGYTALHRAIYYGNIDCASLLL-------------  106 (1267)
T ss_pred             hHHHhhccceeeeeeccchhHHHHHHHh--cCce----eeeccccccchHhhHhhhhchHHHHHHHH-------------
Confidence            5578999999999999999999999999  7764    788995 7999999999999998876651             


Q ss_pred             hHHHHhccchhhhhhccCCCCcccccc
Q 021201           81 QAVKKVVPRKLAEAKNKKGLTPRALFS  107 (316)
Q Consensus        81 ~~v~~lv~~~~~~~~N~~G~Tp~~l~~  107 (316)
                            -.+.....+|++|..|++...
T Consensus       107 ------~~g~SL~i~Dkeglsplq~~~  127 (1267)
T KOG0783|consen  107 ------SKGRSLRIKDKEGLSPLQFLS  127 (1267)
T ss_pred             ------hcCCceEEecccCCCHHHHHh
Confidence                  112344566777777766543

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=98.16  E-value=7.7e-07  Score=91.99  Aligned_cols=74  Identities=18%  Similarity=0.105  Sum_probs=60.4

Q ss_pred             HHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhHhHHHHhccch
Q 021201           11 IFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQAVKKVVPRK   90 (316)
Q Consensus        11 ~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~~~v~~lv~~~   90 (316)
                      .||.|+.+|+.+.+++|++  .+++    +|.+|.+|+||||+|+..|+.++++.|                ++   .+.
T Consensus        85 ~L~~aa~~G~~~~vk~LL~--~Gad----in~~d~~G~TpLh~Aa~~g~~eiv~~L----------------L~---~Ga  139 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLT--GGAD----PNCRDYDGRTPLHIACANGHVQVVRVL----------------LE---FGA  139 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHH--CCCC----CCCcCCCCCcHHHHHHHCCCHHHHHHH----------------HH---CCC
Confidence            4889999999999999999  7654    699999999999999999997766554                11   235


Q ss_pred             hhhhhccCCCCccccccch
Q 021201           91 LAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        91 ~~~~~N~~G~Tp~~l~~~~  109 (316)
                      +++.+|++|.||++++...
T Consensus       140 dvn~~d~~G~TpLh~A~~~  158 (664)
T PTZ00322        140 DPTLLDKDGKTPLELAEEN  158 (664)
T ss_pred             CCCCCCCCCCCHHHHHHHC
Confidence            6778888899998887654

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.16  E-value=6.9e-07  Score=90.85  Aligned_cols=81  Identities=21%  Similarity=0.259  Sum_probs=60.6

Q ss_pred             CCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhHhHHHHh
Q 021201            7 NRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQAVKKV   86 (316)
Q Consensus         7 ~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~~~v~~l   86 (316)
                      .|+.||-.|+--+|.|+|++|++  .+++    +|++|.+|||.||.-+..-..++.+.                 +-+.
T Consensus       239 fGEyPLSfAAC~nq~eivrlLl~--~gAd----~~aqDS~GNTVLH~lVi~~~~~My~~-----------------~L~~  295 (782)
T KOG3676|consen  239 FGEYPLSFAACTNQPEIVRLLLA--HGAD----PNAQDSNGNTVLHMLVIHFVTEMYDL-----------------ALEL  295 (782)
T ss_pred             eccCchHHHHHcCCHHHHHHHHh--cCCC----CCccccCCChHHHHHHHHHHHHHHHH-----------------HHhc
Confidence            38999999999999999999999  7775    79999999999999988632221111                 1110


Q ss_pred             ccchhhhhhccCCCCccccccchh
Q 021201           87 VPRKLAEAKNKKGLTPRALFSEQH  110 (316)
Q Consensus        87 v~~~~~~~~N~~G~Tp~~l~~~~~  110 (316)
                      -.......+|++|.||+.++.+..
T Consensus       296 ga~~l~~v~N~qgLTPLtLAaklG  319 (782)
T KOG3676|consen  296 GANALEHVRNNQGLTPLTLAAKLG  319 (782)
T ss_pred             CCCccccccccCCCChHHHHHHhh
Confidence            001235789999999999987653

>PHA02792 ankyrin-like protein; Provisional

Probab=98.09  E-value=2e-06  Score=87.13  Aligned_cols=60  Identities=7%  Similarity=0.015  Sum_probs=51.7

Q ss_pred             CccccCCCCcHHhHHHHCC-------CHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhC--CCCccccc
Q 021201            1 MWKCDENRYTIFHIAVSNR-------QVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLA--PPDRLNVV   66 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~-------~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~--~~~~v~~L   66 (316)
                      |+..|+.|+||||+|+.++       +.|+++.|++  +++.    ++.+|+.|.||||+|+...  ..+++++|
T Consensus       168 i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~--~g~~----~~~~d~~g~t~l~~~~~~~~i~~ei~~~L  236 (631)
T PHA02792        168 TDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLIS--HEKE----MRYYTYREHTTLYYYVDKCDIKREIFDAL  236 (631)
T ss_pred             cccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHh--CCCC----cCccCCCCChHHHHHHHcccchHHHHHHH
Confidence            4567888999999999999       8999999999  7764    6889999999999999998  55666655

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.08  E-value=8.4e-07  Score=85.41  Aligned_cols=108  Identities=19%  Similarity=0.185  Sum_probs=86.8

Q ss_pred             ccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cC-----------
Q 021201            2 WKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SG-----------   68 (316)
Q Consensus         2 ~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~g-----------   68 (316)
                      |+......|||--|+.-|+.++|+||++  ++++    ++..|..|+|.||+|+.+|+.++++.|  .|           
T Consensus       111 N~tT~TNStPLraACfDG~leivKyLvE--~gad----~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGN  184 (615)
T KOG0508|consen  111 NDTTRTNSTPLRAACFDGHLEIVKYLVE--HGAD----PEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGN  184 (615)
T ss_pred             ccccccCCccHHHHHhcchhHHHHHHHH--cCCC----CcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCc
Confidence            4445556799999999999999999999  8775    688999999999999999999988776  22           


Q ss_pred             chHHhHHHhhhHhHHHHhccchhhhhhccCCCCccccccch-hhhhhh
Q 021201           69 SALQMQRELLWFQAVKKVVPRKLAEAKNKKGLTPRALFSEQ-HRDLKE  115 (316)
Q Consensus        69 aal~~~~el~w~~~v~~lv~~~~~~~~N~~G~Tp~~l~~~~-~~~l~~  115 (316)
                      .+++.+.|.+..+.++.++.......+|..|.||+-.+... |.+.++
T Consensus       185 TALH~caEsG~vdivq~Ll~~ga~i~~d~~GmtPL~~Aa~tG~~~iVe  232 (615)
T KOG0508|consen  185 TALHDCAESGSVDIVQLLLKHGAKIDVDGHGMTPLLLAAVTGHTDIVE  232 (615)
T ss_pred             hHHHhhhhcccHHHHHHHHhCCceeeecCCCCchHHHHhhhcchHHHH
Confidence            46777888888888888887666777888899999887654 444433

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=98.07  E-value=6.4e-07  Score=90.37  Aligned_cols=80  Identities=21%  Similarity=0.245  Sum_probs=62.2

Q ss_pred             ccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhHhHH
Q 021201            4 CDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQAV   83 (316)
Q Consensus         4 ~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~~~v   83 (316)
                      .|.+|.+|||+|+.+|+.+++++++.  ..+    .+|++..+|.||||+||..|+.+.+.+|                +
T Consensus        78 ~d~kg~~plhlaaw~g~~e~vkmll~--q~d----~~na~~~e~~tplhlaaqhgh~dvv~~L----------------l  135 (854)
T KOG0507|consen   78 CDTKGILPLHLAAWNGNLEIVKMLLL--QTD----ILNAVNIENETPLHLAAQHGHLEVVFYL----------------L  135 (854)
T ss_pred             hhccCcceEEehhhcCcchHHHHHHh--ccc----CCCcccccCcCccchhhhhcchHHHHHH----------------H
Confidence            46889999999999999999999998  432    2699999999999999999998877655                0


Q ss_pred             HHhccchhhhhhccCCCCccccccc
Q 021201           84 KKVVPRKLAEAKNKKGLTPRALFSE  108 (316)
Q Consensus        84 ~~lv~~~~~~~~N~~G~Tp~~l~~~  108 (316)
                      +   ..++.-++|+.++|++|++.+
T Consensus       136 ~---~~adp~i~nns~~t~ldlA~q  157 (854)
T KOG0507|consen  136 K---KNADPFIRNNSKETVLDLASR  157 (854)
T ss_pred             h---cCCCccccCcccccHHHHHHH
Confidence            0   123445566667777766544

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=98.06  E-value=3.7e-06  Score=73.95  Aligned_cols=106  Identities=16%  Similarity=0.139  Sum_probs=85.2

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--c-----------
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--S-----------   67 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~-----------   67 (316)
                      ||..|+.|-|||.||+.+||..+|++|++  .|++    ++..-+.-.|+|.+|...|..+++++|  .           
T Consensus       153 VN~~De~GfTpLiWAaa~G~i~vV~fLL~--~GAd----p~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNG  226 (296)
T KOG0502|consen  153 VNACDEFGFTPLIWAAAKGHIPVVQFLLN--SGAD----PDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNG  226 (296)
T ss_pred             ccCccccCchHhHHHHhcCchHHHHHHHH--cCCC----hhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCC
Confidence            57889999999999999999999999999  7765    456677888999999999999998876  1           


Q ss_pred             CchHHhHHHhhhHhHHHHhcc-chhhhhhccCCCCccccccchhhh
Q 021201           68 GSALQMQRELLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSEQHRD  112 (316)
Q Consensus        68 gaal~~~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~~~~~  112 (316)
                      |.++-+...-++-+-+|.++. +++++..+..|.++++++......
T Consensus       227 gTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr  272 (296)
T KOG0502|consen  227 GTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYR  272 (296)
T ss_pred             CceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhH
Confidence            233334444455677888875 578999999999999998765433

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=97.99  E-value=3.5e-06  Score=76.69  Aligned_cols=61  Identities=15%  Similarity=0.131  Sum_probs=52.8

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV   66 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L   66 (316)
                      ++.+|++|.|+|..|+..|+.+.+++|++  .+++-   -..++..+.||||.||..|+.++-+++
T Consensus        38 vn~~D~sGMs~LahAaykGnl~~v~lll~--~gaDv---N~~qhg~~YTpLmFAALSGn~dvcrll   98 (396)
T KOG1710|consen   38 VNQRDPSGMSVLAHAAYKGNLTLVELLLE--LGADV---NDKQHGTLYTPLMFAALSGNQDVCRLL   98 (396)
T ss_pred             hhccCCCcccHHHHHHhcCcHHHHHHHHH--hCCCc---CcccccccccHHHHHHHcCCchHHHHH
Confidence            36789999999999999999999999999  88752   245888999999999999998876655

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=97.86  E-value=1.3e-05  Score=69.26  Aligned_cols=85  Identities=22%  Similarity=0.236  Sum_probs=64.3

Q ss_pred             ccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhHhHH
Q 021201            4 CDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQAV   83 (316)
Q Consensus         4 ~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~~~v   83 (316)
                      .+..+.+++|.|+..+..+++++++.  .+..    ++.+|.+|.||||+|+..++..               ..+.+.+
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~----~~~~~~~g~t~l~~a~~~~~~~---------------~~~~~~~  127 (235)
T COG0666          69 RDLDGRLPLHSAASKGDDKIVKLLLA--SGAD----VNAKDADGDTPLHLAALNGNPP---------------EGNIEVA  127 (235)
T ss_pred             CCccccCHHHHHHHcCcHHHHHHHHH--cCCC----cccccCCCCcHHHHHHhcCCcc---------------cchHHHH
Confidence            45668999999999999999999998  6654    5899999999999999999841               1112223


Q ss_pred             HHhcc-ch---hhhhhccCCCCccccccch
Q 021201           84 KKVVP-RK---LAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        84 ~~lv~-~~---~~~~~N~~G~Tp~~l~~~~  109 (316)
                      +.++. ..   ..+.+|.+|.||++.+...
T Consensus       128 ~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~  157 (235)
T COG0666         128 KLLLEAGADLDVNNLRDEDGNTPLHWAALN  157 (235)
T ss_pred             HHHHHcCCCCCCccccCCCCCchhHHHHHc
Confidence            33332 23   4566799999999987654

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=97.83  E-value=1.8e-05  Score=61.91  Aligned_cols=59  Identities=29%  Similarity=0.384  Sum_probs=50.4

Q ss_pred             ccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc
Q 021201            2 WKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV   66 (316)
Q Consensus         2 ~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L   66 (316)
                      +..|..|.|+||.|+..++.+++++|++  .+..    ++..|..|.||+|.|+..++.++++.|
T Consensus        34 ~~~~~~g~~~l~~a~~~~~~~~~~~ll~--~~~~----~~~~~~~~~~~l~~a~~~~~~~~~~~L   92 (126)
T cd00204          34 NAKDNDGRTPLHLAAKNGHLEIVKLLLE--KGAD----VNARDKDGNTPLHLAARNGNLDVVKLL   92 (126)
T ss_pred             CccCCCCCcHHHHHHHcCCHHHHHHHHH--cCCC----ccccCCCCCCHHHHHHHcCcHHHHHHH
Confidence            3568899999999999999999999999  6542    578889999999999999987776655

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.81  E-value=2.1e-05  Score=76.85  Aligned_cols=58  Identities=24%  Similarity=0.182  Sum_probs=51.7

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccc
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLN   64 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~   64 (316)
                      |..+|..|+||||+||.-|+.+.++.|+.  .+++    +..+|++|++|||.|+..|+.+++.
T Consensus        48 id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~--a~Ad----v~~kN~~gWs~L~EAv~~g~~q~i~  105 (560)
T KOG0522|consen   48 IDRRDPPGRTPLHLAVRLGHVEAARILLS--AGAD----VSIKNNEGWSPLHEAVSTGNEQIIT  105 (560)
T ss_pred             eccccCCCCccHHHHHHhcCHHHHHHHHh--cCCC----ccccccccccHHHHHHHcCCHHHHH
Confidence            46789999999999999999999999999  7664    6789999999999999999976553

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=97.71  E-value=3.2e-05  Score=53.20  Aligned_cols=28  Identities=29%  Similarity=0.415  Sum_probs=21.2

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHh
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFID   28 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll   28 (316)
                      ++.+|.+|+||||+|+++|+.+++++|+
T Consensus        27 in~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen   27 INAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             TT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            4678999999999999999999999985

...

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=97.68  E-value=2.9e-05  Score=75.22  Aligned_cols=87  Identities=23%  Similarity=0.281  Sum_probs=65.3

Q ss_pred             ccCCCCcH------HhHHHHCCCHHHHHHHhhcchhhhhhhhcccCC-CCCChHHHHHhhhCCCCccccccCchHHhHHH
Q 021201            4 CDENRYTI------FHIAVSNRQVELFKFIDADDMKAIADLLVDSTD-GEGNNILHLAGKLAPPDRLNVVSGSALQMQRE   76 (316)
Q Consensus         4 ~D~~G~T~------LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D-~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~e   76 (316)
                      +|++|-+.      ||-.|+.|+.++.--|+.  .|++    .|-.+ +.|+||||.||+.|+...+++|          
T Consensus       123 rDdD~~~~~~LsrQLhasvRt~nlet~LRll~--lGA~----~N~~hpekg~TpLHvAAk~Gq~~Q~ElL----------  186 (669)
T KOG0818|consen  123 RDDDSVTAKDLSKQLHSSVRTGNLETCLRLLS--LGAQ----ANFFHPEKGNTPLHVAAKAGQILQAELL----------  186 (669)
T ss_pred             CCcchhhHHHHHHHHHHHhhcccHHHHHHHHH--cccc----cCCCCcccCCchhHHHHhccchhhhhHH----------
Confidence            35555554      899999999998887877  6664    46666 5899999999999997665554          


Q ss_pred             hhhHhHHHHhccchhhhhhccCCCCccccccch-hhhhhh
Q 021201           77 LLWFQAVKKVVPRKLAEAKNKKGLTPRALFSEQ-HRDLKE  115 (316)
Q Consensus        77 l~w~~~v~~lv~~~~~~~~N~~G~Tp~~l~~~~-~~~l~~  115 (316)
                               .+=++++...|.+|.||.+++... |.++-+
T Consensus       187 ---------~vYGAD~~a~d~~GmtP~~~AR~~gH~~lae  217 (669)
T KOG0818|consen  187 ---------AVYGADPGAQDSSGMTPVDYARQGGHHELAE  217 (669)
T ss_pred             ---------hhccCCCCCCCCCCCcHHHHHHhcCchHHHH
Confidence                     123467889999999999998764 544443

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=97.68  E-value=1.7e-05  Score=77.90  Aligned_cols=84  Identities=19%  Similarity=0.244  Sum_probs=63.2

Q ss_pred             cccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhHhH
Q 021201            3 KCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQA   82 (316)
Q Consensus         3 ~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~~~   82 (316)
                      -++.+.++.||+|++.|+-+||+|++.  ++.- + ++++.|+.|.|+||-||-.++..+..++.               
T Consensus       894 ~~~~~~~sllh~a~~tg~~eivkyild--h~p~-e-lld~~de~get~lhkaa~~~~r~vc~~lv---------------  954 (1004)
T KOG0782|consen  894 IQGPDHCSLLHYAAKTGNGEIVKYILD--HGPS-E-LLDMADETGETALHKAACQRNRAVCQLLV---------------  954 (1004)
T ss_pred             eeCcchhhHHHHHHhcCChHHHHHHHh--cCCH-H-HHHHHhhhhhHHHHHHHHhcchHHHHHHH---------------
Confidence            357788999999999999999999999  5432 2 36899999999999999988755443331               


Q ss_pred             HHHhccchhhhhhccCCCCccccccch
Q 021201           83 VKKVVPRKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        83 v~~lv~~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                       +   .++.....|.+|+||.+-+++.
T Consensus       955 -d---agasl~ktd~kg~tp~eraqqa  977 (1004)
T KOG0782|consen  955 -D---AGASLRKTDSKGKTPQERAQQA  977 (1004)
T ss_pred             -h---cchhheecccCCCChHHHHHhc
Confidence             0   1234456688899998766543

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.55  E-value=3.1e-05  Score=79.03  Aligned_cols=80  Identities=21%  Similarity=0.248  Sum_probs=59.6

Q ss_pred             CCCCcHHhHHHHCCCHHHHHHHhhcchhhhhh-----hhcccCCC--------------CCChHHHHHhhhCCCCccccc
Q 021201            6 ENRYTIFHIAVSNRQVELFKFIDADDMKAIAD-----LLVDSTDG--------------EGNNILHLAGKLAPPDRLNVV   66 (316)
Q Consensus         6 ~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~-----~lin~~D~--------------~GnTpLHlAa~~~~~~~v~~L   66 (316)
                      -.|+||||+|+.+++.+.|++|++  .+++-+     ......|.              -|..||-+||-.++++++++|
T Consensus       182 Y~GqSaLHiAIv~~~~~~V~lLl~--~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlL  259 (782)
T KOG3676|consen  182 YYGQSALHIAIVNRDAELVRLLLA--AGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLL  259 (782)
T ss_pred             hcCcchHHHHHHhccHHHHHHHHH--cCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHH
Confidence            359999999999999999999999  554311     01122222              467899999999999988776


Q ss_pred             cCchHHhHHHhhhHhHHHHhccchhhhhhccCCCCccccc
Q 021201           67 SGSALQMQRELLWFQAVKKVVPRKLAEAKNKKGLTPRALF  106 (316)
Q Consensus        67 ~gaal~~~~el~w~~~v~~lv~~~~~~~~N~~G~Tp~~l~  106 (316)
                                      ++   .+++++++|.+|.|-+|+.
T Consensus       260 ----------------l~---~gAd~~aqDS~GNTVLH~l  280 (782)
T KOG3676|consen  260 ----------------LA---HGADPNAQDSNGNTVLHML  280 (782)
T ss_pred             ----------------Hh---cCCCCCccccCCChHHHHH
Confidence                            11   4567788888888888764

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=97.42  E-value=3e-05  Score=74.86  Aligned_cols=61  Identities=21%  Similarity=0.235  Sum_probs=50.9

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV   66 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L   66 (316)
                      ++.+|-+.||+||+|+..|+.+++++|++.+.     ...+.+|..|+|||.=|-..++.+++++|
T Consensus       532 ~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~k-----v~~~~kDRw~rtPlDdA~~F~h~~v~k~L  592 (622)
T KOG0506|consen  532 LETKDYDDRTALHVAAAEGHVEVVKFLLNACK-----VDPDPKDRWGRTPLDDAKHFKHKEVVKLL  592 (622)
T ss_pred             ccccccccchhheeecccCceeHHHHHHHHHc-----CCCChhhccCCCcchHhHhcCcHHHHHHH
Confidence            35678899999999999999999999998322     23688999999999999999998877665

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=97.28  E-value=0.00012  Score=72.15  Aligned_cols=56  Identities=20%  Similarity=0.265  Sum_probs=49.7

Q ss_pred             cCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc
Q 021201            5 DENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV   66 (316)
Q Consensus         5 D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L   66 (316)
                      +.+|+|+||+|++.|+..+.++|+-  .+.+    +.+.|.+|+|+|.+|-..|..+++.+|
T Consensus       658 ~~~grt~LHLa~~~gnVvl~QLLiW--yg~d----v~~rda~g~t~l~yar~a~sqec~d~l  713 (749)
T KOG0705|consen  658 EGDGRTALHLAARKGNVVLAQLLIW--YGVD----VMARDAHGRTALFYARQAGSQECIDVL  713 (749)
T ss_pred             CCCCcchhhhhhhhcchhHHHHHHH--hCcc----ceecccCCchhhhhHhhcccHHHHHHH
Confidence            5679999999999999999999997  7764    678999999999999999987776655

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.23  E-value=0.00017  Score=75.46  Aligned_cols=79  Identities=18%  Similarity=0.144  Sum_probs=66.0

Q ss_pred             CCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhHhHHHH
Q 021201            6 ENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQAVKK   85 (316)
Q Consensus         6 ~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~~~v~~   85 (316)
                      ..|.|+||.|+.++...++++|++  .+++    +|+.|..|+||||.+...|+.....++.                  
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~--~ga~----vn~~d~~g~~plh~~~~~g~~~~~~~ll------------------  709 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQ--NGAD----VNALDSKGRTPLHHATASGHTSIACLLL------------------  709 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHh--cCCc----chhhhccCCCcchhhhhhcccchhhhhc------------------
Confidence            357999999999999999999999  7775    7999999999999999999977665541                  


Q ss_pred             hccchhhhhhccCCCCccccccch
Q 021201           86 VVPRKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        86 lv~~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                       -+.+..++.|.+|++|++++.+.
T Consensus       710 -~~~a~~~a~~~~~~~~l~~a~~~  732 (785)
T KOG0521|consen  710 -KRGADPNAFDPDGKLPLDIAMEA  732 (785)
T ss_pred             -cccccccccCccCcchhhHHhhh
Confidence             13456788899999999987543

>PF13606 Ank_3: Ankyrin repeat

Probab=97.20  E-value=7.6e-05  Score=45.24  Aligned_cols=21  Identities=29%  Similarity=0.379  Sum_probs=18.5

Q ss_pred             CCChHHHHHhhhCCCCccccc
Q 021201           46 EGNNILHLAGKLAPPDRLNVV   66 (316)
Q Consensus        46 ~GnTpLHlAa~~~~~~~v~~L   66 (316)
                      +|+||||+|++.|+.++++.|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~L   21 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYL   21 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHH
Confidence            699999999999998877665

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=97.18  E-value=6.4e-05  Score=46.35  Aligned_cols=21  Identities=33%  Similarity=0.615  Sum_probs=18.1

Q ss_pred             CCChHHHHHhhhCCCCccccc
Q 021201           46 EGNNILHLAGKLAPPDRLNVV   66 (316)
Q Consensus        46 ~GnTpLHlAa~~~~~~~v~~L   66 (316)
                      +|+||||+|+..++.++++.|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~L   21 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLL   21 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHHHH
Confidence            699999999999998776655

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.11  E-value=0.00025  Score=61.19  Aligned_cols=61  Identities=16%  Similarity=0.112  Sum_probs=53.7

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV   66 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L   66 (316)
                      ||.+|..|+|+|..|+..|+.+++.||++  ++.-   .+-..|..|++++.+|-+.|..+.+..|
T Consensus         5 in~rD~fgWTalmcaa~eg~~eavsyllg--rg~a---~vgv~d~ssldaaqlaek~g~~~fvh~l   65 (223)
T KOG2384|consen    5 INARDAFGWTALMCAAMEGSNEAVSYLLG--RGVA---FVGVTDESSLDAAQLAEKGGAQAFVHSL   65 (223)
T ss_pred             ccchhhhcchHHHHHhhhcchhHHHHHhc--cCcc---cccccccccchHHHHHHhcChHHHHHHH
Confidence            68999999999999999999999999999  7731   3678999999999999999987766544

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.04  E-value=0.0002  Score=70.13  Aligned_cols=75  Identities=23%  Similarity=0.266  Sum_probs=53.2

Q ss_pred             HHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhHhHHHHhccch
Q 021201           11 IFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQAVKKVVPRK   90 (316)
Q Consensus        11 ~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~~~v~~lv~~~   90 (316)
                      ++|+++.....+=.+..+.  ...  ...++.+|..|+||||+|+..|+.+..++|                   +..++
T Consensus        23 ~lh~~~~~~~~~sl~~el~--~~~--~~~id~~D~~g~TpLhlAV~Lg~~~~a~~L-------------------l~a~A   79 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELL--AKV--SLVIDRRDPPGRTPLHLAVRLGHVEAARIL-------------------LSAGA   79 (560)
T ss_pred             ccchhhhccchhhHHHHHh--hhh--hceeccccCCCCccHHHHHHhcCHHHHHHH-------------------HhcCC
Confidence            4899988776654444433  221  123689999999999999999997655443                   12346


Q ss_pred             hhhhhccCCCCccccccc
Q 021201           91 LAEAKNKKGLTPRALFSE  108 (316)
Q Consensus        91 ~~~~~N~~G~Tp~~l~~~  108 (316)
                      ++..+|++|++|++-+..
T Consensus        80 dv~~kN~~gWs~L~EAv~   97 (560)
T KOG0522|consen   80 DVSIKNNEGWSPLHEAVS   97 (560)
T ss_pred             CccccccccccHHHHHHH
Confidence            778899999999886543

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=97.03  E-value=0.00049  Score=66.96  Aligned_cols=54  Identities=17%  Similarity=0.130  Sum_probs=48.1

Q ss_pred             CCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCcccc
Q 021201            6 ENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNV   65 (316)
Q Consensus         6 ~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~   65 (316)
                      +.|.||||+|++.|+..-+++|.-  .|++    +++.|.+|.||+-+|-..||-+....
T Consensus       165 ekg~TpLHvAAk~Gq~~Q~ElL~v--YGAD----~~a~d~~GmtP~~~AR~~gH~~laeR  218 (669)
T KOG0818|consen  165 EKGNTPLHVAAKAGQILQAELLAV--YGAD----PGAQDSSGMTPVDYARQGGHHELAER  218 (669)
T ss_pred             ccCCchhHHHHhccchhhhhHHhh--ccCC----CCCCCCCCCcHHHHHHhcCchHHHHH
Confidence            469999999999999999999998  8875    79999999999999999999765443

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=96.54  E-value=0.0012  Score=64.07  Aligned_cols=81  Identities=12%  Similarity=0.136  Sum_probs=61.8

Q ss_pred             ccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhHhHH
Q 021201            4 CDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQAV   83 (316)
Q Consensus         4 ~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~~~v   83 (316)
                      ++.++...+.+|+++|.....+-+.-  .+.+    ++.+|.+..|+||.||..|+.++++.|                +
T Consensus       502 ~~~~~~i~~~~aa~~GD~~alrRf~l--~g~D----~~~~DyD~RTaLHvAAaEG~v~v~kfl----------------~  559 (622)
T KOG0506|consen  502 RENDTVINVMYAAKNGDLSALRRFAL--QGMD----LETKDYDDRTALHVAAAEGHVEVVKFL----------------L  559 (622)
T ss_pred             ccccchhhhhhhhhcCCHHHHHHHHH--hccc----ccccccccchhheeecccCceeHHHHH----------------H
Confidence            35567788999999999998876655  4433    689999999999999999998877665                1


Q ss_pred             HHhccchhhhhhccCCCCccccccc
Q 021201           84 KKVVPRKLAEAKNKKGLTPRALFSE  108 (316)
Q Consensus        84 ~~lv~~~~~~~~N~~G~Tp~~l~~~  108 (316)
                      +.  -..+.+.+|.-|.||+|=+..
T Consensus       560 ~~--~kv~~~~kDRw~rtPlDdA~~  582 (622)
T KOG0506|consen  560 NA--CKVDPDPKDRWGRTPLDDAKH  582 (622)
T ss_pred             HH--HcCCCChhhccCCCcchHhHh
Confidence            10  013457889999999986543

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=96.29  E-value=0.0026  Score=62.57  Aligned_cols=73  Identities=16%  Similarity=0.078  Sum_probs=56.8

Q ss_pred             HhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhHhHHHHhccchh
Q 021201           12 FHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQAVKKVVPRKL   91 (316)
Q Consensus        12 LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~~~v~~lv~~~~   91 (316)
                      |.=|+..|-.|+|+-++.  .-.    +....+++|-|+||-|.-.||.++|++|                ++   -+.+
T Consensus       554 LLDaaLeGEldlVq~~i~--ev~----DpSqpNdEGITaLHNAiCaghyeIVkFL----------------i~---~gan  608 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIY--EVT----DPSQPNDEGITALHNAICAGHYEIVKFL----------------IE---FGAN  608 (752)
T ss_pred             HHhhhhcchHHHHHHHHH--hhc----CCCCCCccchhHHhhhhhcchhHHHHHH----------------Hh---cCCc
Confidence            344788899999987765  322    2567889999999999999998887665                11   2467


Q ss_pred             hhhhccCCCCccccccch
Q 021201           92 AEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        92 ~~~~N~~G~Tp~~l~~~~  109 (316)
                      +|+.|.||+||+|.+...
T Consensus       609 VNa~DSdGWTPLHCAASC  626 (752)
T KOG0515|consen  609 VNAADSDGWTPLHCAASC  626 (752)
T ss_pred             ccCccCCCCchhhhhhhc
Confidence            899999999999998654

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=96.02  E-value=0.0072  Score=46.59  Aligned_cols=46  Identities=15%  Similarity=0.085  Sum_probs=38.0

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHH
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILH   52 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLH   52 (316)
                      |+++|+.|-|||.-|+..||.+.|++|++  +++++    ...-.+|.+.+.
T Consensus        60 i~~kDKygITPLLsAvwEGH~~cVklLL~--~GAdr----t~~~PdG~~~~e  105 (117)
T KOG4214|consen   60 IQDKDKYGITPLLSAVWEGHRDCVKLLLQ--NGADR----TIHAPDGTALIE  105 (117)
T ss_pred             cCCccccCCcHHHHHHHHhhHHHHHHHHH--cCccc----ceeCCCchhHHh
Confidence            67899999999999999999999999999  88763    345566766544

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=95.82  E-value=0.007  Score=63.85  Aligned_cols=84  Identities=11%  Similarity=0.070  Sum_probs=63.6

Q ss_pred             ccccCCCCcHHhHHHHCCCHHHHHHHhhc-chhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhH
Q 021201            2 WKCDENRYTIFHIAVSNRQVELFKFIDAD-DMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWF   80 (316)
Q Consensus         2 ~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~-~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~   80 (316)
                      +...-.|++.+|+++..++...++-++++ +.+      .+..|.+|...+|++|..|..-.+.++              
T Consensus       568 ~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~------~~eld~d~qgV~hfca~lg~ewA~ll~--------------  627 (975)
T KOG0520|consen  568 SSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSG------DLELDRDGQGVIHFCAALGYEWAFLPI--------------  627 (975)
T ss_pred             ccCCCcchHHHHHHHHHhHHHHHHHHhcccccC------chhhcccCCChhhHhhhcCCceeEEEE--------------
Confidence            45667899999999999999999999985 332      367889999999997776664333222              


Q ss_pred             hHHHHhccchhhhhhccCCCCccccccchh
Q 021201           81 QAVKKVVPRKLAEAKNKKGLTPRALFSEQH  110 (316)
Q Consensus        81 ~~v~~lv~~~~~~~~N~~G~Tp~~l~~~~~  110 (316)
                           ...+..++.+|.+|+||+|++....
T Consensus       628 -----~~~~~ai~i~D~~G~tpL~wAa~~G  652 (975)
T KOG0520|consen  628 -----SADGVAIDIRDRNGWTPLHWAAFRG  652 (975)
T ss_pred             -----eecccccccccCCCCcccchHhhcC
Confidence                 1234567889999999999988763

>smart00248 ANK ankyrin repeats

Probab=95.65  E-value=0.015  Score=32.44  Aligned_cols=23  Identities=26%  Similarity=0.397  Sum_probs=21.7

Q ss_pred             CCCcHHhHHHHCCCHHHHHHHhh
Q 021201            7 NRYTIFHIAVSNRQVELFKFIDA   29 (316)
Q Consensus         7 ~G~T~LH~Av~~~~~~iv~~Ll~   29 (316)
                      +|.|++|+|++.++.+++++|++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~   23 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLD   23 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHH
Confidence            48899999999999999999998

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=95.54  E-value=0.0062  Score=60.53  Aligned_cols=77  Identities=18%  Similarity=0.254  Sum_probs=55.5

Q ss_pred             HhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhHhHHHHhccchh
Q 021201           12 FHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQAVKKVVPRKL   91 (316)
Q Consensus        12 LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~~~v~~lv~~~~   91 (316)
                      |.-|+.......+-+|+.  ++...+..-..-|.+|.|+||||+..|+.....+           +.|+.        .+
T Consensus       628 Ll~A~~~~Dl~t~~lLLA--hg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QL-----------LiWyg--------~d  686 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLA--HGSREEVNETCGEGDGRTALHLAARKGNVVLAQL-----------LIWYG--------VD  686 (749)
T ss_pred             HHHHHHHHHHHHHHHHHh--ccCchhhhccccCCCCcchhhhhhhhcchhHHHH-----------HHHhC--------cc
Confidence            455676666777778888  6665554445567788999999999998543322           34654        47


Q ss_pred             hhhhccCCCCccccccch
Q 021201           92 AEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        92 ~~~~N~~G~Tp~~l~~~~  109 (316)
                      +..+|.+|.|++..+...
T Consensus       687 v~~rda~g~t~l~yar~a  704 (749)
T KOG0705|consen  687 VMARDAHGRTALFYARQA  704 (749)
T ss_pred             ceecccCCchhhhhHhhc
Confidence            788999999998877654

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=95.31  E-value=0.007  Score=64.35  Aligned_cols=94  Identities=17%  Similarity=0.098  Sum_probs=61.1

Q ss_pred             CCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccC--chHHhHHH--------
Q 021201            7 NRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSG--SALQMQRE--------   76 (316)
Q Consensus         7 ~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~g--aal~~~~e--------   76 (316)
                      +-+|+|-.|+..||.|++++|+.  +++.    +...|..|.+||-+|+-.||..++..|-+  +++.-|.+        
T Consensus       756 n~~t~LT~acaggh~e~vellv~--rgan----iehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lS  829 (2131)
T KOG4369|consen  756 NIKTNLTSACAGGHREEVELLVV--RGAN----IEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLS  829 (2131)
T ss_pred             cccccccccccCccHHHHHHHHH--hccc----ccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEE
Confidence            45788888899999999998888  6654    46788888888888888888877776633  33333322        


Q ss_pred             ----hhhHhHHHHhcc-chhhhhhccCCCCccccc
Q 021201           77 ----LLWFQAVKKVVP-RKLAEAKNKKGLTPRALF  106 (316)
Q Consensus        77 ----l~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~  106 (316)
                          -+.++.|+.++. ....+.||-...||+.++
T Consensus       830 lacsggr~~vvelLl~~gankehrnvsDytPlsla  864 (2131)
T KOG4369|consen  830 LACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLA  864 (2131)
T ss_pred             EecCCCcchHHHHHHHhhccccccchhhcCchhhh
Confidence                112344444432 244455555555665554

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=95.27  E-value=0.014  Score=61.58  Aligned_cols=67  Identities=16%  Similarity=0.077  Sum_probs=47.5

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhh--cccCCCCCChHHHHHhhhCCCCccccccCc
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLL--VDSTDGEGNNILHLAGKLAPPDRLNVVSGS   69 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~l--in~~D~~GnTpLHlAa~~~~~~~v~~L~ga   69 (316)
                      |+-+|.+||||||||+.+|+++++.-|++  .++....+  .+..+-.|.|+--+|..+|+..+-..++..
T Consensus       634 i~i~D~~G~tpL~wAa~~G~e~l~a~l~~--lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  634 IDIRDRNGWTPLHWAAFRGREKLVASLIE--LGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             cccccCCCCcccchHhhcCHHHHHHHHHH--hccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            45678889999999999999998888886  44332222  244555788888888888887665555433

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=95.04  E-value=0.016  Score=53.24  Aligned_cols=57  Identities=11%  Similarity=0.144  Sum_probs=49.3

Q ss_pred             ccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc
Q 021201            4 CDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV   66 (316)
Q Consensus         4 ~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L   66 (316)
                      .+..+.||||.|+..|+.++.++|++  .|+.    ....+.-|.|+-.+||.-|+.+++.++
T Consensus        75 qhg~~YTpLmFAALSGn~dvcrllld--aGa~----~~~vNsvgrTAaqmAAFVG~H~CV~iI  131 (396)
T KOG1710|consen   75 QHGTLYTPLMFAALSGNQDVCRLLLD--AGAR----MYLVNSVGRTAAQMAAFVGHHECVAII  131 (396)
T ss_pred             cccccccHHHHHHHcCCchHHHHHHh--ccCc----cccccchhhhHHHHHHHhcchHHHHHH
Confidence            35668999999999999999999999  7764    355678899999999999999988765

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=94.92  E-value=0.008  Score=62.22  Aligned_cols=64  Identities=22%  Similarity=0.192  Sum_probs=47.9

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchh----------------hhhhhhcccC----------------CCCCC
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMK----------------AIADLLVDST----------------DGEGN   48 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~----------------~~~~~lin~~----------------D~~Gn   48 (316)
                      ||-+|.-|+++||+|++|.+.|+.++|++  .+                ..-+.+++.+                -..+-
T Consensus        55 inc~d~lGr~al~iai~nenle~~eLLl~--~~~~~gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~di  132 (822)
T KOG3609|consen   55 INCRDPLGRLALHIAIDNENLELQELLLD--TSSEEGDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDI  132 (822)
T ss_pred             hhccChHhhhceecccccccHHHHHHHhc--CccccchHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCc
Confidence            45678899999999999999999999998  43                1111122221                12467


Q ss_pred             hHHHHHhhhCCCCccccc
Q 021201           49 NILHLAGKLAPPDRLNVV   66 (316)
Q Consensus        49 TpLHlAa~~~~~~~v~~L   66 (316)
                      |||.+||..++.|+++.|
T Consensus       133 tPliLAAh~NnyEil~~L  150 (822)
T KOG3609|consen  133 TPLMLAAHLNNFEILQCL  150 (822)
T ss_pred             cHHHHHHHhcchHHHHHH
Confidence            999999999999988776

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=93.45  E-value=0.035  Score=58.45  Aligned_cols=57  Identities=19%  Similarity=0.133  Sum_probs=50.3

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCcc
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRL   63 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v   63 (316)
                      |+.+|..|+||||.+...|+...+..+++  ++++    .++.|.+|.+||++|....+.+.+
T Consensus       682 vn~~d~~g~~plh~~~~~g~~~~~~~ll~--~~a~----~~a~~~~~~~~l~~a~~~~~~d~~  738 (785)
T KOG0521|consen  682 VNALDSKGRTPLHHATASGHTSIACLLLK--RGAD----PNAFDPDGKLPLDIAMEAANADIV  738 (785)
T ss_pred             chhhhccCCCcchhhhhhcccchhhhhcc--cccc----ccccCccCcchhhHHhhhccccHH
Confidence            57889999999999999999999999999  8775    588999999999999887665544

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=93.40  E-value=0.033  Score=59.51  Aligned_cols=53  Identities=13%  Similarity=-0.005  Sum_probs=30.5

Q ss_pred             CCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCC-CCCChHHHHHhhhCCCCccc
Q 021201            6 ENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTD-GEGNNILHLAGKLAPPDRLN   64 (316)
Q Consensus         6 ~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D-~~GnTpLHlAa~~~~~~~v~   64 (316)
                      +.|-.||.+|.++||...+..|++  .+.+    +|++- .+-||+|-+|...|..+.+.
T Consensus       890 klgisPLmlatmngh~~at~~ll~--~gsd----iNaqIeTNrnTaltla~fqgr~evv~  943 (2131)
T KOG4369|consen  890 KLGISPLMLATMNGHQAATLSLLQ--PGSD----INAQIETNRNTALTLALFQGRPEVVF  943 (2131)
T ss_pred             ccCcchhhhhhhccccHHHHHHhc--ccch----hccccccccccceeeccccCcchHHH
Confidence            346677777777777777777777  3332    33322 24455555555555555443

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=93.34  E-value=0.084  Score=54.92  Aligned_cols=50  Identities=20%  Similarity=0.274  Sum_probs=42.2

Q ss_pred             ccC-CCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCC
Q 021201            4 CDE-NRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAP   59 (316)
Q Consensus         4 ~D~-~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~   59 (316)
                      .|+ .|+||||-|..+|+.|.+.+|++  ++.-    +..+|++|-.||.+-.+-.+
T Consensus        81 qD~ESG~taLHRaiyyG~idca~lLL~--~g~S----L~i~Dkeglsplq~~~r~~~  131 (1267)
T KOG0783|consen   81 QDEESGYTALHRAIYYGNIDCASLLLS--KGRS----LRIKDKEGLSPLQFLSRVLS  131 (1267)
T ss_pred             ccccccchHhhHhhhhchHHHHHHHHh--cCCc----eEEecccCCCHHHHHhhccc
Confidence            344 59999999999999999999999  6642    57899999999999888433

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=91.69  E-value=0.11  Score=49.49  Aligned_cols=49  Identities=16%  Similarity=0.177  Sum_probs=41.3

Q ss_pred             HhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc
Q 021201           12 FHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV   66 (316)
Q Consensus        12 LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L   66 (316)
                      |-.|++.|..+.|++|++  .|..    +|+.|...+.||.+|..-||...+++|
T Consensus        40 lceacR~GD~d~v~~LVe--tgvn----VN~vD~fD~spL~lAsLcGHe~vvklL   88 (516)
T KOG0511|consen   40 LCEACRAGDVDRVRYLVE--TGVN----VNAVDRFDSSPLYLASLCGHEDVVKLL   88 (516)
T ss_pred             HHHHhhcccHHHHHHHHH--hCCC----cchhhcccccHHHHHHHcCcHHHHHHH
Confidence            667888999999999998  6654    788999999999999999988877766

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=91.37  E-value=0.12  Score=51.69  Aligned_cols=57  Identities=23%  Similarity=0.251  Sum_probs=49.1

Q ss_pred             cccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCcccc
Q 021201            3 KCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNV   65 (316)
Q Consensus         3 ~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~   65 (316)
                      ..|+.|+|+||-|+-.|+..+..+|++  .++-    +...|.+|.||=.-|-+.++++...+
T Consensus       929 ~~de~get~lhkaa~~~~r~vc~~lvd--agas----l~ktd~kg~tp~eraqqa~d~dlaay  985 (1004)
T KOG0782|consen  929 MADETGETALHKAACQRNRAVCQLLVD--AGAS----LRKTDSKGKTPQERAQQAGDPDLAAY  985 (1004)
T ss_pred             HHhhhhhHHHHHHHHhcchHHHHHHHh--cchh----heecccCCCChHHHHHhcCCchHHHH
Confidence            457899999999999999999999999  7653    47899999999999999998775433

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=90.61  E-value=0.17  Score=49.90  Aligned_cols=45  Identities=20%  Similarity=0.219  Sum_probs=38.9

Q ss_pred             cCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHh
Q 021201            5 DENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAG   55 (316)
Q Consensus         5 D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa   55 (316)
                      |..--|+||+|+.+|..+.|.++++  .+.+    ...+|..|.||..+++
T Consensus       427 ~~ltsT~LH~aa~qg~~k~v~~~Le--eg~D----p~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  427 DYLTSTFLHYAAAQGARKCVKYFLE--EGCD----PSTKDGAGRTPYSLSA  471 (591)
T ss_pred             ccccchHHHHHHhcchHHHHHHHHH--hcCC----chhcccCCCCcccccc
Confidence            3345799999999999999999999  6643    6789999999999987

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=89.96  E-value=0.15  Score=50.23  Aligned_cols=69  Identities=14%  Similarity=0.160  Sum_probs=43.6

Q ss_pred             HHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhHhHHHHhccchhhhhhccCCC
Q 021201           21 VELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQAVKKVVPRKLAEAKNKKGL  100 (316)
Q Consensus        21 ~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~~~v~~lv~~~~~~~~N~~G~  100 (316)
                      .+.+++|.+.+...+.++-....|.---|+||+|+..|..+++..+                ++   ..++..++|..|+
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~----------------Le---eg~Dp~~kd~~Gr  464 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYF----------------LE---EGCDPSTKDGAGR  464 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHH----------------HH---hcCCchhcccCCC
Confidence            3455666662222222222345666678999999999986655433                12   2367788999999


Q ss_pred             Cccccccc
Q 021201          101 TPRALFSE  108 (316)
Q Consensus       101 Tp~~l~~~  108 (316)
                      ||+++..+
T Consensus       465 tpy~ls~n  472 (591)
T KOG2505|consen  465 TPYSLSAN  472 (591)
T ss_pred             Cccccccc
Confidence            99988654

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=85.39  E-value=1  Score=43.26  Aligned_cols=33  Identities=15%  Similarity=0.067  Sum_probs=30.6

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhh
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAI   35 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~   35 (316)
                      ||.+|....+||.+|...||+++|++|++  +|+.
T Consensus        62 VN~vD~fD~spL~lAsLcGHe~vvklLLe--nGAi   94 (516)
T KOG0511|consen   62 VNAVDRFDSSPLYLASLCGHEDVVKLLLE--NGAI   94 (516)
T ss_pred             cchhhcccccHHHHHHHcCcHHHHHHHHH--cCCc
Confidence            68899999999999999999999999999  7763

>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=83.38  E-value=0.67  Score=40.70  Aligned_cols=51  Identities=18%  Similarity=0.184  Sum_probs=39.5

Q ss_pred             cCCCCcHHhHHHHCCCHHHHH-HHhhcchhhhhhhhcccCCCCCChHHHHHhhh
Q 021201            5 DENRYTIFHIAVSNRQVELFK-FIDADDMKAIADLLVDSTDGEGNNILHLAGKL   57 (316)
Q Consensus         5 D~~G~T~LH~Av~~~~~~iv~-~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~   57 (316)
                      |.+-++|||-|++-++++++- |+++  +.+.-+-++|..|.+|..+|.+|-..
T Consensus       219 d~kTe~~LHk~iki~REDVl~LYfie--~dakiP~~LNd~D~nG~~ALdiAL~~  270 (280)
T KOG4591|consen  219 DGKTENPLHKAIKIEREDVLFLYFIE--MDAKIPGILNDADHNGALALDIALCR  270 (280)
T ss_pred             cCCCcchhHHhhhccccceeeehhhh--ccccccccccccCCCchHHHHHHHHH
Confidence            667789999999999999874 5666  44333334699999999999998653

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=82.00  E-value=0.49  Score=41.27  Aligned_cols=27  Identities=15%  Similarity=0.194  Sum_probs=24.2

Q ss_pred             cccCCCCCChHHHHHhhhCCCCccccc
Q 021201           40 VDSTDGEGNNILHLAGKLAPPDRLNVV   66 (316)
Q Consensus        40 in~~D~~GnTpLHlAa~~~~~~~v~~L   66 (316)
                      +|+.|..|+|||..||..|..+.+.++
T Consensus         5 in~rD~fgWTalmcaa~eg~~eavsyl   31 (223)
T KOG2384|consen    5 INARDAFGWTALMCAAMEGSNEAVSYL   31 (223)
T ss_pred             ccchhhhcchHHHHHhhhcchhHHHHH
Confidence            699999999999999999998777655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	316
2pnn_A	273	Transient receptor potential cation channel subfa	3e-04
2etb_A	256	Transient receptor potential cation channel subfam	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 10/96 (10%)

Query: 9   YTIFHIAVSNRQVELFKF-IDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVS 67
                +A    Q+ + KF +      A     + + D  GN +LH   ++A     N   
Sbjct: 149 ELPLSLAACTNQLAIVKFLLQNSWQPAD----ISARDSVGNTVLHALVEVADNTVDNTKF 204

Query: 68  GSALQMQRELLWFQAVKKVVPR-KLAEAKNKKGLTP 102
            ++  M  E+L      K+ P  KL E  N+KGLTP
Sbjct: 205 VTS--MYNEIL--ILGAKLHPTLKLEEITNRKGLTP 236

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 10/96 (10%)

Query: 9   YTIFHIAVSNRQVELFKF-IDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVS 67
                +A   +Q ++  + ++     A     +++TD  GN +LH    +A     N   
Sbjct: 137 ELPLSLAACTKQWDVVTYLLENPHQPAS----LEATDSLGNTVLHALVMIADNSPEN--- 189

Query: 68  GSALQMQRELLWFQAVKKVVPR-KLAEAKNKKGLTP 102
            SAL +       Q   ++ P  +L E  N +GLTP
Sbjct: 190 -SALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTP 224

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 4e-04
 Identities = 46/283 (16%), Positives = 84/283 (29%), Gaps = 77/283 (27%)

Query: 54  AGK--LAPPDRLNVVSGSALQ--MQRELLWFQAVKKVVPRKLAEAKNK------KGLTPR 103
           +GK  +A    L+V     +Q  M  ++ W        P  + E   K         T R
Sbjct: 161 SGKTWVA----LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216

Query: 104 ALFSEQHRDLKEKGEKWMKDTASSCMIVATLIATVVFAAALTVPGGNKEDTGLPFFLHNV 163
           +  S   +      +  ++           L+ +  +   L V             L NV
Sbjct: 217 SDHSSNIKLRIHSIQAELRR----------LLKSKPYENCLLV-------------LLNV 253

Query: 164 S----FKIFAVS----------NVISLVASTLSIVVFLSLVTPRYAEKDFLSLLPRKLYV 209
                +  F +S           V   +++  +  + L   +      +  SLL + L  
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313

Query: 210 GLGTL----------FIA-IAAMMVVFSATSFIVFTDGSTW-----IAILVIVVPSVPAI 253
               L           ++ IA  +    AT          W       +  I+  S+  +
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATW-------DNWKHVNCDKLTTIIESSL-NV 365

Query: 254 LFFYLHFRLFDDILRSVFVSDYLIPKCKTSLFYKEGETKVKQQ 296
           L    + ++FD +  SVF     IP    SL + +        
Sbjct: 366 LEPAEYRKMFDRL--SVFPPSAHIPTILLSLIWFDVIKSDVMV 406

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	316
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.49
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.47
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.43
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.43
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.43
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.41
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.39
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.36
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.34
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.33
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.33
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.33
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.33
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.32
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.32
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.31
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.31
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.31
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.3
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.3
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.3
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.29
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.29
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.27
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.27
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.26
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.26
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.26
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.25
2rfa_A	232	Transient receptor potential cation channel subfa	99.25
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.24
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.24
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.24
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.24
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.23
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.23
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.23
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.22
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.22
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.21
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.21
2etb_A	256	Transient receptor potential cation channel subfam	99.2
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.2
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.19
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.19
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.18
2pnn_A	273	Transient receptor potential cation channel subfa	99.18
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.18
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.18
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.18
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.17
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.17
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.17
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.17
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.17
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.16
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.16
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.16
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.16
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.14
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.14
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.14
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.14
2rfa_A	232	Transient receptor potential cation channel subfa	99.14
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.14
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.14
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.13
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.13
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.13
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.12
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.11
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.11
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.11
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.1
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.1
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.09
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.09
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.09
2etb_A	256	Transient receptor potential cation channel subfam	99.09
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.08
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.08
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.08
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.07
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.07
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.06
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.06
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.02
2pnn_A	273	Transient receptor potential cation channel subfa	99.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	98.99
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	98.99
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	98.98
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	98.97
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	98.97
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	98.97
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	98.95
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	98.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	98.94
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	98.94
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	98.93
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	98.92
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	98.91
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	98.91
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	98.91
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	98.88
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	98.88
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	98.87
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	98.82
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	98.81
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	98.65
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	98.56
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	98.19

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.49  E-value=6.7e-15  Score=124.79  Aligned_cols=103  Identities=23%  Similarity=0.282  Sum_probs=70.8

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cC----------
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SG----------   68 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~g----------   68 (316)
                      ++.+|.+|+||||+|+..++.+++++|++  .+.+    ++.+|.+|+||||+|+..|+.+++++|  .|          
T Consensus        30 vn~~d~~g~t~l~~a~~~~~~~~~~~ll~--~gad----~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G  103 (169)
T 4gpm_A           30 VNASDSDGRTPLHHAAENGHKEVVKLLIS--KGAD----VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG  103 (169)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHH--TTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             CCCcCCCCCCHHHHHHHcCCHHHHHHHHh--cccc----hhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCC
Confidence            45667777777777777777777777777  5543    577777777777777777777766554  22          


Q ss_pred             -chHHhHHHhhhHhHHHHhcc-chhhhhhccCCCCccccccch
Q 021201           69 -SALQMQRELLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        69 -aal~~~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                       .+++...+.+..+.++.++. +.+++.+|++|+||++++.+.
T Consensus       104 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~  146 (169)
T 4gpm_A          104 RTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREH  146 (169)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence             23444444444555555553 467888999999999988654

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.47  E-value=1.7e-14  Score=114.43  Aligned_cols=80  Identities=20%  Similarity=0.118  Sum_probs=46.2

Q ss_pred             cccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhHhH
Q 021201            3 KCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQA   82 (316)
Q Consensus         3 ~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~~~   82 (316)
                      .+|..|+||||+|+++++.+++++|++  .+.+    +|.+|.+|+||||+|+..++.++                    
T Consensus        35 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~----~~~~d~~g~tpL~~A~~~~~~~~--------------------   88 (123)
T 3aaa_C           35 RTLEGGRKPLHYAADCGQLEILEFLLL--KGAD----INAPDKHHITPLLSAVYEGHVSC--------------------   88 (123)
T ss_dssp             SCCTTSSCHHHHHHHTTCHHHHHHHHT--TTCC----TTCCCTTSCCHHHHHHHHTCHHH--------------------
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHH--cCCC----CCcCCCCCCCHHHHHHHcCCHHH--------------------
Confidence            445555555555555555555555555  4332    45555555555555555555433                    


Q ss_pred             HHHhcc-chhhhhhccCCCCccccccc
Q 021201           83 VKKVVP-RKLAEAKNKKGLTPRALFSE  108 (316)
Q Consensus        83 v~~lv~-~~~~~~~N~~G~Tp~~l~~~  108 (316)
                      ++.++. +.+++.+|.+|+||++++..
T Consensus        89 v~~Ll~~ga~~~~~~~~g~t~l~~A~~  115 (123)
T 3aaa_C           89 VKLLLSKGADKTVKGPDGLTAFEATDN  115 (123)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHCCC
T ss_pred             HHHHHHcCCCCCCcCCCCCCHHHHhCC
Confidence            333332 35678889999999998754

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.43  E-value=1.1e-13  Score=111.73  Aligned_cols=101  Identities=18%  Similarity=0.145  Sum_probs=80.9

Q ss_pred             cccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cC-----------c
Q 021201            3 KCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SG-----------S   69 (316)
Q Consensus         3 ~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~g-----------a   69 (316)
                      .+|.+|+||||+|+.+|+.+++++|++  .+.+    +|.+|.+|+||||+|+..++.++++.|  .|           .
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~--~g~~----~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t   78 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQ--NGSD----PNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDS   78 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHH--TTCC----SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCC
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHH--cCCC----CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCC
Confidence            368899999999999999999999999  6653    689999999999999999998877655  22           3


Q ss_pred             hHHhHHHhhhHhHHHHhcc-chhhhhhccCCCCccccccch
Q 021201           70 ALQMQRELLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        70 al~~~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                      +++.....+..+.++.++. +.+++.+|.+|+||++++...
T Consensus        79 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~  119 (137)
T 3c5r_A           79 PLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDE  119 (137)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhc
Confidence            4555555555666666664 467889999999999998765

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.43  E-value=2.4e-14  Score=108.22  Aligned_cols=78  Identities=28%  Similarity=0.381  Sum_probs=64.2

Q ss_pred             CCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhHhHHHHh
Q 021201            7 NRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQAVKKV   86 (316)
Q Consensus         7 ~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~~~v~~l   86 (316)
                      +|+||||+|+++|+.+++++|++  .+.+    +|.+|.+|+||||+|+..++.++++.|                ++  
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~--~g~~----~n~~d~~g~t~L~~A~~~~~~~~v~~L----------------l~--   56 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLE--AGAD----VNAKDKNGRTPLHLAARNGHLEVVKLL----------------LE--   56 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHH--TTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHH----------------HH--
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHH--cCCC----CcccCCCCCCHHHHHHHcCCHHHHHHH----------------HH--
Confidence            58999999999999999999999  7654    799999999999999999987665444                11  


Q ss_pred             ccchhhhhhccCCCCccccccch
Q 021201           87 VPRKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        87 v~~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                       .+.+++.+|.+|+||++++...
T Consensus        57 -~ga~~~~~d~~g~t~l~~A~~~   78 (93)
T 1n0q_A           57 -AGADVNAKDKNGRTPLHLAARN   78 (93)
T ss_dssp             -TTCCTTCCCTTSCCHHHHHHHT
T ss_pred             -cCCCCCccCCCCCCHHHHHHHc
Confidence             2456788999999999988654

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.43  E-value=1.4e-13  Score=114.24  Aligned_cols=106  Identities=20%  Similarity=0.232  Sum_probs=83.2

Q ss_pred             ccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cC-----------
Q 021201            2 WKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SG-----------   68 (316)
Q Consensus         2 ~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~g-----------   68 (316)
                      +..|..|+||||+|+.+|+.+++++|++  .+.+    +|.+|.+|+||||+|+..++.++++.|  .|           
T Consensus        36 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  109 (165)
T 3twr_A           36 RDIEGRQSTPLHFAAGYNRVSVVEYLLQ--HGAD----VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF  109 (165)
T ss_dssp             CCTTTTCCCHHHHHHHTTCHHHHHHHHH--TTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCC
T ss_pred             cccccCCCCHHHHHHHcChHHHHHHHHh--cCCC----CCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCC
Confidence            4567889999999999999999999999  6653    689999999999999999998877665  22           


Q ss_pred             chHHhHHHhhhHhHHHHhcc-chhhhhhccCCCCccccccchhhhh
Q 021201           69 SALQMQRELLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSEQHRDL  113 (316)
Q Consensus        69 aal~~~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~~~~~l  113 (316)
                      .+++.....+..+.++.++. +.+++.+|.+|+||++++.+.+.+.
T Consensus       110 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~i  155 (165)
T 3twr_A          110 TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDGDTDI  155 (165)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCTTCHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhcCChHH
Confidence            34555555555666666664 4678899999999999987755443

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.41  E-value=7.4e-14  Score=126.68  Aligned_cols=101  Identities=16%  Similarity=0.117  Sum_probs=57.5

Q ss_pred             cccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cC-----------c
Q 021201            3 KCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SG-----------S   69 (316)
Q Consensus         3 ~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~g-----------a   69 (316)
                      .+|.+|+||+|+|+..++.+++++|++  .+.+    +|.+|.+|+||||+|+..|+.+++++|  .|           .
T Consensus       114 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~--~g~~----~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t  187 (269)
T 4b93_B          114 ARNADQAVPLHLACQQGHFQVVKCLLD--SNAK----PNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNT  187 (269)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHH--TTCC----SCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCB
T ss_pred             ccCCCCCCccccccccChHHHHHHHHH--CCCC----CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCc
Confidence            345555555555555555555555555  4432    455555555555555555555554443  12           2


Q ss_pred             hHHhHHHhhhHhHHHHhcc-chhhhhhccCCCCccccccch
Q 021201           70 ALQMQRELLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        70 al~~~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                      +++.....+..+.|+.++. +++++.+|++|+||++++.+.
T Consensus       188 ~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~  228 (269)
T 4b93_B          188 ALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQN  228 (269)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTT
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhC
Confidence            2333333333444555543 467899999999999998653

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.39  E-value=3.8e-13  Score=113.43  Aligned_cols=103  Identities=17%  Similarity=0.142  Sum_probs=82.4

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cC----------
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SG----------   68 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~g----------   68 (316)
                      ++.+|..|+||||+|+.+|+.+++++|++  .+.+    +|.+|.+|+||||+|+..++.++++.|  .|          
T Consensus        32 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g  105 (179)
T 3f6q_A           32 LNQGDDHGFSPLHWACREGRSAVVEMLIM--RGAR----INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHG  105 (179)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHH--TTCC----TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             ccccCCCCCCHHHHHHHcCcHHHHHHHHH--cCCC----CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCC
Confidence            35678899999999999999999999999  6654    689999999999999999998887665  22          


Q ss_pred             -chHHhHHHhhhHhHHHHhcc-chhhhhhccCCCCccccccch
Q 021201           69 -SALQMQRELLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        69 -aal~~~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                       .+++.....+..+.++.++. +.+++.+|.+|+||++++...
T Consensus       106 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~  148 (179)
T 3f6q_A          106 NVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAP  148 (179)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHH
Confidence             34555555555666666664 467888999999999998765

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.36  E-value=1.5e-13  Score=110.98  Aligned_cols=81  Identities=21%  Similarity=0.189  Sum_probs=44.9

Q ss_pred             cccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhHhH
Q 021201            3 KCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQA   82 (316)
Q Consensus         3 ~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~~~   82 (316)
                      .+|..|+||||+|+.+|+.+++++|++  .+.+    +|.+|.+|+||||+|+..++.+                    .
T Consensus        42 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~----~~~~d~~g~t~L~~A~~~~~~~--------------------~   95 (136)
T 2jab_A           42 AKDEYGLTPLYLATAHGHLEIVEVLLK--NGAD----VNAVDAIGFTPLHLAAFIGHLE--------------------I   95 (136)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHH--TTCC----TTCCCTTCCCHHHHHHHHTCHH--------------------H
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHH--cCCC----CCcCCCCCCCHHHHHHHcCCHH--------------------H
Confidence            344445555555555555555555554  3322    3444555555555555544433                    3


Q ss_pred             HHHhcc-chhhhhhccCCCCccccccch
Q 021201           83 VKKVVP-RKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        83 v~~lv~-~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                      ++.++. +.+++.+|.+|+||++++...
T Consensus        96 v~~Ll~~g~~~~~~~~~g~tpl~~A~~~  123 (136)
T 2jab_A           96 AEVLLKHGADVNAQDKFGKTAFDISIGN  123 (136)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHcCCCCcCcCCCCCCHHHHHHHC
Confidence            443332 456788999999999988754

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.34  E-value=3e-13  Score=111.08  Aligned_cols=101  Identities=16%  Similarity=0.125  Sum_probs=65.5

Q ss_pred             ccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cC-----------
Q 021201            2 WKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SG-----------   68 (316)
Q Consensus         2 ~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~g-----------   68 (316)
                      +.+|..|+||||+ +.+|+.+++++|++  .+.+    +|.+|.+|+||||+|+..|+.++++.|  .|           
T Consensus        30 ~~~~~~g~t~L~~-~~~~~~~~v~~Ll~--~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  102 (156)
T 1bd8_A           30 DALNRFGKTALQV-MMFGSTAIALELLK--QGAS----PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGA  102 (156)
T ss_dssp             TCCCTTSCCHHHH-SCTTCHHHHHHHHH--TTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSC
T ss_pred             cccCCCCCcHHHH-HHcCCHHHHHHHHH--CCCC----CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCC
Confidence            4456677777777 77777777777777  5543    567777777777777777776665544  11           


Q ss_pred             chHHhHHHhhhHhHHHHhccchhhhhhccCCCCccccccch
Q 021201           69 SALQMQRELLWFQAVKKVVPRKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        69 aal~~~~el~w~~~v~~lv~~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                      .+++.....+..+.++.++...+.+.+|.+|+||++++...
T Consensus       103 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~g~t~l~~A~~~  143 (156)
T 1bd8_A          103 LPIHLAVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQR  143 (156)
T ss_dssp             CHHHHHHHHTCHHHHHHHHTTSCTTCCCTTSCCHHHHHHHS
T ss_pred             cHHHHHHHhChHHHHHHHHhccCCCCcCCCCCCHHHHHHHc
Confidence            23344433344455555554467788889999999887654

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.33  E-value=7.7e-13  Score=110.51  Aligned_cols=102  Identities=19%  Similarity=0.135  Sum_probs=79.3

Q ss_pred             ccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cC-----------
Q 021201            2 WKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SG-----------   68 (316)
Q Consensus         2 ~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~g-----------   68 (316)
                      +.+|..|+||||+|+.+|+.+++++|++  .+.+    +|.+|.+|+||||+|+..++.++++.|  .|           
T Consensus        30 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  103 (172)
T 3v30_A           30 NKPDERGFTPLIWASAFGEIETVRFLLE--WGAD----PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGG  103 (172)
T ss_dssp             GCCCTTSCCHHHHHHHTTCHHHHHHHHH--HTCC----TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSC
T ss_pred             cCCCCCCCCHHHHHHHcCCHHHHHHHHH--cCCC----chhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCC
Confidence            5678899999999999999999999999  7654    688999999999999999998877655  12           


Q ss_pred             chHHhHHHhhhHhHHHHhcc-chhhhhhccCCCCccccccch
Q 021201           69 SALQMQRELLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        69 aal~~~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                      .+++.....+..+.++.++. +.+++.+|.+|+||++++...
T Consensus       104 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~  145 (172)
T 3v30_A          104 TPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVAL  145 (172)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHh
Confidence            34455544455566666553 466788888889998887654

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.33  E-value=9.2e-13  Score=109.48  Aligned_cols=103  Identities=17%  Similarity=0.140  Sum_probs=72.5

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cC----------
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SG----------   68 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~g----------   68 (316)
                      ++.+|.+|+||||+|+.+|+.+++++|++  .+..    ++.+|.+|+||||+|+..++.++++.+  .|          
T Consensus        29 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g  102 (167)
T 3v31_A           29 INHTDEEGFTPLMWAAAHGQIAVVEFLLQ--NGAD----PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNG  102 (167)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHH--TTCC----TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTS
T ss_pred             cCCCCCCCCCHHHHHHHCCCHHHHHHHHH--cCCC----CCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCC
Confidence            35678888888888888888888888888  6543    577888888888888888887776554  11          


Q ss_pred             -chHHhHHHhhhHhHHHHhcc-chhhhhhccCCCCccccccch
Q 021201           69 -SALQMQRELLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        69 -aal~~~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                       .+++.....+..+.++.++. +.+++.+|.+|+||++++...
T Consensus       103 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~  145 (167)
T 3v31_A          103 GTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVAL  145 (167)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence             33444444444555555553 356677778888888877654

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.33  E-value=2.8e-13  Score=115.02  Aligned_cols=82  Identities=23%  Similarity=0.267  Sum_probs=51.2

Q ss_pred             ccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCC-CCCChHHHHHhhhCCCCccccccCchHHhHHHhhhH
Q 021201            2 WKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTD-GEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWF   80 (316)
Q Consensus         2 ~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D-~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~   80 (316)
                      +.+|.+|+||||+|+.+|+.+++++|++  .+.+    +|.+| .+|+||||+|+..++.++++.               
T Consensus        70 ~~~d~~g~t~L~~A~~~~~~~~v~~Ll~--~ga~----~~~~~~~~g~tpL~~A~~~~~~~~v~~---------------  128 (183)
T 3deo_A           70 DAVDENGRTALLFVAGLGSDKCVRLLAE--AGAD----LDHRDMRGGLTALHMAAGYVRPEVVEA---------------  128 (183)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHHH--TTCC----TTCCCSSSSCCHHHHHHHTTCHHHHHH---------------
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHHHHHH--cCCC----CCcCCCCCCCCHHHHHHhcCcHHHHHH---------------
Confidence            4455666666666666666666666666  4432    45555 566666666666665444333               


Q ss_pred             hHHHHhcc-chhhhhhccCCCCccccccch
Q 021201           81 QAVKKVVP-RKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        81 ~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                           ++. +.+++.+|.+|+||++++.+.
T Consensus       129 -----Ll~~ga~~~~~d~~g~tpl~~A~~~  153 (183)
T 3deo_A          129 -----LVELGADIEVEDERGLTALELAREI  153 (183)
T ss_dssp             -----HHHHTCCTTCCCTTSCCHHHHHHHH
T ss_pred             -----HHHcCCCCcCCCCCCCCHHHHHHHh
Confidence                 332 356788999999999988654

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.33  E-value=3e-13  Score=109.16  Aligned_cols=102  Identities=12%  Similarity=0.064  Sum_probs=74.0

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cC----------
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SG----------   68 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~g----------   68 (316)
                      ++.+|.+|+||||+|+++|+.+++++|++  .+.+    +|.+|.+|+||||+|+. ++.++++.|  .|          
T Consensus         5 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~----~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~   77 (136)
T 1d9s_A            5 IHMLGGSSDAGLATAAARGQVETVRQLLE--AGAD----PNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPAT   77 (136)
T ss_dssp             CSCCCCCCSCHHHHHHHTTCHHHHHHHHH--TTCC----TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTT
T ss_pred             ccCCCCCCccHHHHHHHcCCHHHHHHHHH--cCCC----cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCC
Confidence            46789999999999999999999999999  6653    68999999999999999 887776654  11          


Q ss_pred             --chHHhHHHhhhHhHHHHhcc-chhhhhhccCCCCccccccch
Q 021201           69 --SALQMQRELLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        69 --aal~~~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                        .+++.....+..+.++.++. +.+++.+|.+|+||++++...
T Consensus        78 g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~  121 (136)
T 1d9s_A           78 LTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQ  121 (136)
T ss_dssp             TBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence              23444433344444554443 345666777777777766543

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.32  E-value=7.6e-13  Score=118.31  Aligned_cols=104  Identities=15%  Similarity=0.141  Sum_probs=67.6

Q ss_pred             ccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCC-CCChHHHHHhhhCCCCccccc--cC----------
Q 021201            2 WKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDG-EGNNILHLAGKLAPPDRLNVV--SG----------   68 (316)
Q Consensus         2 ~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~-~GnTpLHlAa~~~~~~~v~~L--~g----------   68 (316)
                      +.+|..|+||||+|+.+|+.+++++|++  .+..    +|.+|. .|+||||+|+..++.+++++|  .|          
T Consensus       152 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~----~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g  225 (282)
T 1oy3_D          152 EAENYDGHTPLHVAVIHKDAEMVRLLRD--AGAD----LNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGG  225 (282)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHH--HTCC----TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             CCcCCCCcCHHHHHHHcCCHHHHHHHHH--cCCC----CCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCC
Confidence            4678899999999999999999999999  7764    678885 499999999999998887765  22          


Q ss_pred             -chHHhHHHhhhHhHHHHhcc-chhhhhhccCCCCccccccchhh
Q 021201           69 -SALQMQRELLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSEQHR  111 (316)
Q Consensus        69 -aal~~~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~~~~  111 (316)
                       .+++.....+..+.++.++. +++++.+|.+|+||++.+.....
T Consensus       226 ~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~~  270 (282)
T 1oy3_D          226 RTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSD  270 (282)
T ss_dssp             CCHHHHHHTSSCHHHHHHHHHTTCCCCCCC---------------
T ss_pred             CCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCccc
Confidence             34444444444555555553 46788888999999888776543

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.32  E-value=5e-13  Score=113.15  Aligned_cols=94  Identities=22%  Similarity=0.217  Sum_probs=76.0

Q ss_pred             cHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cC-----------chHHhHHH
Q 021201           10 TIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SG-----------SALQMQRE   76 (316)
Q Consensus        10 T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~g-----------aal~~~~e   76 (316)
                      +.|+.|+++|+.++|++|++  .+++    +|.+|.+|+||||+|+..++.+.++.+  .|           .+++....
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~--~Gad----vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~   79 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIE--NGAD----VNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAE   79 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHH--TTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHH--CCCC----CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHH
Confidence            47999999999999999999  7764    799999999999999999988776554  22           35555555


Q ss_pred             hhhHhHHHHhcc-chhhhhhccCCCCccccccch
Q 021201           77 LLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        77 l~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                      .+..+.++.++. +.+++.+|.+|+||++++...
T Consensus        80 ~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~  113 (169)
T 4gpm_A           80 NGHKEVVKLLISKGADVNAKDSDGRTPLHHAAEN  113 (169)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             cCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHc
Confidence            566677777664 467899999999999988654

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.31  E-value=5e-13  Score=109.79  Aligned_cols=100  Identities=15%  Similarity=0.103  Sum_probs=73.9

Q ss_pred             ccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cC-----------ch
Q 021201            4 CDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SG-----------SA   70 (316)
Q Consensus         4 ~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~g-----------aa   70 (316)
                      .|..|+||||+|+.+|+.+++++|++  .+..    ++.+|.+|+||||+|+..++.++++.+  .|           .+
T Consensus        30 ~~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  103 (153)
T 1awc_B           30 TDWLGTSPLHLAAQYGHFSTTEVLLR--AGVS----RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTA  103 (153)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHT--TTCC----TTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHH--cCCC----CCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCH
Confidence            57789999999999999999999999  6653    688999999999999999988777655  12           23


Q ss_pred             HHhHHHhhhHhHHHHhcc-chhhhhhccCCCCccccccch
Q 021201           71 LQMQRELLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        71 l~~~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                      ++.....+..+.++.++. +.+++.+|.+|+||++++...
T Consensus       104 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~  143 (153)
T 1awc_B          104 LHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDN  143 (153)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence            444444444455555543 356677778888888776544

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.31  E-value=1.4e-12  Score=109.02  Aligned_cols=102  Identities=21%  Similarity=0.251  Sum_probs=70.3

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cC----------
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SG----------   68 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~g----------   68 (316)
                      ++.+|.+|+||||+|+++|+.+++++|++  .+..    ++.+|.+|+||||+|+..++.++++.|  .|          
T Consensus        40 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~----~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g  113 (169)
T 2y1l_E           40 VNAEDASGWTPLHLAAFNGHLEIVEVLLK--NGAD----VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEG  113 (169)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHH--TTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHH--cCCC----CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Confidence            35678889999999999999999999998  6653    688899999999999998887776654  12          


Q ss_pred             -chHHhHHHhhhHhHHHHhcc-chhhhhhccCCCCccccccc
Q 021201           69 -SALQMQRELLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSE  108 (316)
Q Consensus        69 -aal~~~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~  108 (316)
                       .+++.....+..+.++.++. +.+++.+|.+|+||++++.+
T Consensus       114 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~  155 (169)
T 2y1l_E          114 HTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISID  155 (169)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence             23333333334444444442 34556666667777766554

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.31  E-value=1.2e-12  Score=111.44  Aligned_cols=102  Identities=16%  Similarity=0.030  Sum_probs=75.3

Q ss_pred             ccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cC-----------
Q 021201            2 WKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SG-----------   68 (316)
Q Consensus         2 ~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~g-----------   68 (316)
                      +.+|..|+||||+|+.+|+.+++++|++  .+..    ++.+|.+|+||||+|+..++.++++.|  .|           
T Consensus        29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  102 (192)
T 2rfm_A           29 NYRDSYNRTPLMVACMLGMENAIDKLVE--NFDK----LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGK  102 (192)
T ss_dssp             TCCCTTCCCHHHHHHHHTCGGGHHHHHH--HHCC----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSC
T ss_pred             hCcCCCCCCHHHHHHHcCCHHHHHHHHH--hccc----cccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC
Confidence            5678889999999999999999999888  6653    678888899999999988887776654  12           


Q ss_pred             chHHhHHHhhhHhHHHHhcc-chhhhhhccCCCCccccccch
Q 021201           69 SALQMQRELLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        69 aal~~~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                      .+++.....+..+.++.++. +.+++.+|.+|.||++++...
T Consensus       103 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  144 (192)
T 2rfm_A          103 TPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKY  144 (192)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc
Confidence            34455444455555665553 456778888899999887654

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.30  E-value=5.4e-13  Score=121.68  Aligned_cols=83  Identities=20%  Similarity=0.313  Sum_probs=70.2

Q ss_pred             ccccCCCCcHHhHHHHC---CCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhh
Q 021201            2 WKCDENRYTIFHIAVSN---RQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELL   78 (316)
Q Consensus         2 ~~~D~~G~T~LH~Av~~---~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~   78 (316)
                      +..|..|+||||+|+.+   ++.+++++|++  .+++    +|.+|.+|+||||+|+..|+.+++++|            
T Consensus       163 ~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~--~ga~----in~~d~~g~TpLh~A~~~g~~~~v~~L------------  224 (278)
T 1dcq_A          163 ANGHEPDETALHLAVRSVDRTSLHIVDFLVQ--NSGN----LDKQTGKGSTALHYCCLTDNAECLKLL------------  224 (278)
T ss_dssp             SSCSSTTCBHHHHHHHHCCTTTHHHHHHHHH--HCSC----TTCCCTTCCCHHHHHHHTTCHHHHHHH------------
T ss_pred             cccccCCCCcchHHHHhcccchHHHHHHHHH--CCCC----ccccCCCCCCHHHHHHHcCCHHHHHHH------------
Confidence            34588899999999999   89999999999  7764    799999999999999999997766554            


Q ss_pred             hHhHHHHhccchhhhhhccCCCCccccccch
Q 021201           79 WFQAVKKVVPRKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        79 w~~~v~~lv~~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                          ++   .+++++.+|.+|+||++++...
T Consensus       225 ----l~---~gad~~~~d~~g~tpL~~A~~~  248 (278)
T 1dcq_A          225 ----LR---GKASIEIANESGETPLDIAKRL  248 (278)
T ss_dssp             ----HH---TTCCTTCCCTTSCCHHHHHHHT
T ss_pred             ----HH---cCCCCCCccCCCCCHHHHHHHc
Confidence                11   3467889999999999998764

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.30  E-value=2.7e-13  Score=105.95  Aligned_cols=83  Identities=18%  Similarity=0.142  Sum_probs=66.7

Q ss_pred             ccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhHh
Q 021201            2 WKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQ   81 (316)
Q Consensus         2 ~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~~   81 (316)
                      ...|.+|+|+||+|+.+|+.+++++|++  .+.+    +|.+|.+|+||||+|+..++.++++.|               
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~----i~~~d~~g~tpLh~A~~~~~~~~v~~L---------------   76 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMA--NGAD----VAAKDKNGSTPLHLAARNGHLEVVKLL---------------   76 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHH--TTCC----TTCCCTTCCCHHHHHHHTTCHHHHHHH---------------
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHH--cCCC----CCccCCCCCCHHHHHHHcCCHHHHHHH---------------
Confidence            4578999999999999999999999999  6653    689999999999999999986665443               


Q ss_pred             HHHHhccchhhhhhccCCCCccccccch
Q 021201           82 AVKKVVPRKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        82 ~v~~lv~~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                       ++   .+.+++.+|.+|+||++++...
T Consensus        77 -l~---~ga~~~~~d~~g~tpl~~A~~~  100 (110)
T 2zgd_A           77 -LE---AGADVXAQDKFGKTAFDISIDN  100 (110)
T ss_dssp             -HH---TTCCTTCCCTTSCCHHHHHHHH
T ss_pred             -HH---cCCCccccccCCCcHHHHHHHc
Confidence             11   2456788999999999988764

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.30  E-value=2.4e-13  Score=116.84  Aligned_cols=101  Identities=15%  Similarity=0.072  Sum_probs=70.3

Q ss_pred             ccc-CCCCcHHhHHHHCCCH----HHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCC------ccccc--cCc
Q 021201            3 KCD-ENRYTIFHIAVSNRQV----ELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPD------RLNVV--SGS   69 (316)
Q Consensus         3 ~~D-~~G~T~LH~Av~~~~~----~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~------~v~~L--~ga   69 (316)
                      .+| ..|+||||+|+.+++.    +++++|++  .+++    +|.+|.+|+||||+|+..++.+      ++++|  .|+
T Consensus        32 ~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~--~Gad----vn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Ga  105 (186)
T 3t8k_A           32 DKESVLKSNILYDVLRNNNDEARYKISMFLIN--KGAD----IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGA  105 (186)
T ss_dssp             CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHH--TTCC----SSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             cccccCCCCHHHHHHHcCCcchHHHHHHHHHH--CCCC----CCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCC
Confidence            344 6799999999999975    59999999  7764    7999999999999999998754      24433  333


Q ss_pred             hHH------------hHHH-----hhhHhHHHHhcc--chhhhhhccCCCCccccccch
Q 021201           70 ALQ------------MQRE-----LLWFQAVKKVVP--RKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        70 al~------------~~~e-----l~w~~~v~~lv~--~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                      .++            ....     ....+.++.++.  +.+++.+|++|+||++++.+.
T Consensus       106 din~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~  164 (186)
T 3t8k_A          106 DITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRC  164 (186)
T ss_dssp             CSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTT
T ss_pred             CCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHc
Confidence            222            2111     111223444443  467888888888888887664

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.29  E-value=9.9e-13  Score=120.91  Aligned_cols=88  Identities=14%  Similarity=0.198  Sum_probs=52.8

Q ss_pred             cccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhHhH
Q 021201            3 KCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQA   82 (316)
Q Consensus         3 ~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~~~   82 (316)
                      .+|.+|+||||+|+++|+.+++++|++  .+.+    +|.+|.+|+||||+|+..++.++                    
T Consensus       242 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~--~ga~----~n~~d~~g~t~L~~A~~~~~~~~--------------------  295 (351)
T 3utm_A          242 EKNKDFMTPLHVAAERAHNDVMEVLHK--HGAK----MNALDSLGQTALHRAALAGHLQT--------------------  295 (351)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHH--TTCC----TTCCCTTSCCHHHHHHHHTCHHH--------------------
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHH--CCCC----CCCcCCCCCCHHHHHHHcCcHHH--------------------
Confidence            345555555555555555555555555  4432    45555555555555555555443                    


Q ss_pred             HHHhcc-chhhhhhccCCCCccccccchhhhhhhh
Q 021201           83 VKKVVP-RKLAEAKNKKGLTPRALFSEQHRDLKEK  116 (316)
Q Consensus        83 v~~lv~-~~~~~~~N~~G~Tp~~l~~~~~~~l~~~  116 (316)
                      ++.++. +.+++.+|++|+||++++.+...++..+
T Consensus       296 v~~Ll~~gad~~~~~~~g~tal~~a~~~~~~~l~~  330 (351)
T 3utm_A          296 CRLLLSYGSDPSIISLQGFTAAQMGNEAVQQILSE  330 (351)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHSCHHHHHHHHH
T ss_pred             HHHHHHcCCCCCCcCCCCCChhhhhhHHHHHHHHh
Confidence            443332 4678899999999999997766555544

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.29  E-value=6.9e-13  Score=103.65  Aligned_cols=81  Identities=26%  Similarity=0.283  Sum_probs=67.7

Q ss_pred             cccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhHhH
Q 021201            3 KCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQA   82 (316)
Q Consensus         3 ~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~~~   82 (316)
                      -+|++|+|+||+|+.+|+.+++++|++  .+..    +|.+|.+|+||||+|+..++.++++.|                
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~--~g~~----~~~~d~~g~t~L~~A~~~~~~~~~~~L----------------   61 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLS--KGAD----VNARSKDGNTPLHLAAKNGHAEIVKLL----------------   61 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTT--TTCC----SSCCCSSSCCTTHHHHTTTCHHHHHHH----------------
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHH--cCCC----CCCcCCCCCCHHHHHHHcCcHHHHHHH----------------
Confidence            468999999999999999999999999  6653    689999999999999999986655443                


Q ss_pred             HHHhc-cchhhhhhccCCCCccccccch
Q 021201           83 VKKVV-PRKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        83 v~~lv-~~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                          + .+.+++.+|.+|+||++++...
T Consensus        62 ----l~~g~~~~~~d~~g~tpl~~A~~~   85 (115)
T 2l6b_A           62 ----LAKGADVNARSKDGNTPEHLAKKN   85 (115)
T ss_dssp             ----TTTTCCTTCCCTTCCCTTHHHHTT
T ss_pred             ----HHcCCCCcccCCCCCCHHHHHHHC
Confidence                2 2356788899999999987654

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.27  E-value=9.5e-13  Score=114.77  Aligned_cols=101  Identities=13%  Similarity=0.075  Sum_probs=70.7

Q ss_pred             cccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--c-C-----------
Q 021201            3 KCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--S-G-----------   68 (316)
Q Consensus         3 ~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~-g-----------   68 (316)
                      ..|.+|+|+||+|+.+|+.+++++|++  .+..    +|.+|.+|+||||+|+..|+.++++.|  . |           
T Consensus        68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~  141 (222)
T 3ehr_A           68 EQAESIDNPLHEAAKRGNLSWLRECLD--NRVG----VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGD  141 (222)
T ss_dssp             HHEEEESCHHHHHHHHTCHHHHHHHHH--TTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSC
T ss_pred             ccccccccccccccccCcHHHHHHHHh--CCCC----ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCC
Confidence            456677788888888888888888877  5543    577777888888888887777766554  1 2           


Q ss_pred             chHHhHHHhhhHhHHHHhcc-chhhhhhccCCCCccccccch
Q 021201           69 SALQMQRELLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        69 aal~~~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                      .+++.....+..+.++.++. +.+++.+|.+|+||++++...
T Consensus       142 tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~  183 (222)
T 3ehr_A          142 TALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNA  183 (222)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcch
Confidence            23444444455555665553 467889999999999998764

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.27  E-value=3.1e-12  Score=111.06  Aligned_cols=55  Identities=22%  Similarity=0.215  Sum_probs=27.8

Q ss_pred             ccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccc
Q 021201            4 CDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLN   64 (316)
Q Consensus         4 ~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~   64 (316)
                      +|.+|+||||+|+.+|+.+++++|++  .+.+    ++.+|.+|+||||+|+..++.++++
T Consensus       103 ~~~~g~t~L~~A~~~~~~~~~~~Ll~--~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~  157 (228)
T 2dzn_A          103 ITNQGVTCLHLAVGKKWFEVSQFLIE--NGAS----VRIKDKFNQIPLHRAASVGSLKLIE  157 (228)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHH--TTCC----SCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             CCcCCCCHHHHHHHcCCHhHHHHHHH--cCCC----ccccCCCCCCHHHHHHHcCCHHHHH
Confidence            34445555555555555555555555  3332    3455555555555555555544443

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.26  E-value=2.2e-12  Score=116.78  Aligned_cols=87  Identities=23%  Similarity=0.201  Sum_probs=71.9

Q ss_pred             ccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhHhHH
Q 021201            4 CDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQAV   83 (316)
Q Consensus         4 ~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~~~v   83 (316)
                      .|..|+||||+|+.+|+.+++++|++  .+.+    +|.+|.+|+||||+|+..|+.++++.|                +
T Consensus       195 ~~~~g~t~L~~A~~~g~~~~v~~Ll~--~g~d----~~~~d~~g~tpL~~A~~~~~~~~v~~L----------------l  252 (299)
T 1s70_B          195 HAKSGGTALHVAAAKGYTEVLKLLIQ--ARYD----VNIKDYDGWTPLHAAAHWGKEEACRIL----------------V  252 (299)
T ss_dssp             CTTTCCCHHHHHHHHTCHHHHHHHHT--TTCC----TTCCCTTCCCHHHHHHHTTCHHHHHHH----------------H
T ss_pred             hcCCCCCHHHHHHHCCcHHHHHHHHH--cCCC----CCCcCCCCCcHHHHHHhcCCHHHHHHH----------------H
Confidence            46789999999999999999999999  7754    799999999999999999997665544                1


Q ss_pred             HHhccchhhhhhccCCCCccccccchhhhhhh
Q 021201           84 KKVVPRKLAEAKNKKGLTPRALFSEQHRDLKE  115 (316)
Q Consensus        84 ~~lv~~~~~~~~N~~G~Tp~~l~~~~~~~l~~  115 (316)
                      +   .+.+++.+|.+|+||++++.+...+..+
T Consensus       253 ~---~gad~~~~d~~g~t~l~~A~~~~~~~l~  281 (299)
T 1s70_B          253 E---NLCDMEAVNKVGQTAFDVADEDILGYLE  281 (299)
T ss_dssp             H---TTCCTTCCCTTSCCTTTSCCSGGGHHHH
T ss_pred             H---cCCCCCCcCCCCCCHHHHHHHHHHHHHH
Confidence            1   2457789999999999999876544433

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.26  E-value=1.2e-12  Score=116.54  Aligned_cols=81  Identities=23%  Similarity=0.271  Sum_probs=54.6

Q ss_pred             ccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCC-CCCChHHHHHhhhCCCCccccccCchHHhHHHhhhH
Q 021201            2 WKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTD-GEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWF   80 (316)
Q Consensus         2 ~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D-~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~   80 (316)
                      +.+|.+|+||||+|+.+|+.+++++|++  .+++    +|.+| .+|+||||+|+..|+.+++++|              
T Consensus        71 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~--~ga~----~~~~~~~~g~t~L~~A~~~g~~~~v~~L--------------  130 (244)
T 3ui2_A           71 DAVDENGRTALLFVAGLGSDKCVRLLAE--AGAD----LDHRDMRGGLTALHMAAGYVRPEVVEAL--------------  130 (244)
T ss_dssp             TCBCTTSCBHHHHHHHHTCHHHHHHHHH--TTCC----TTCCCSSSCCCHHHHHHHTTCHHHHHHH--------------
T ss_pred             CCcCCCCCCHHHHHHHCCCHHHHHHHHH--cCCC----CCcCCCCCCCCHHHHHHHcCCHHHHHHH--------------
Confidence            4566667777777777777777777776  5543    45566 5677777777776665544333              


Q ss_pred             hHHHHhc-cchhhhhhccCCCCccccccc
Q 021201           81 QAVKKVV-PRKLAEAKNKKGLTPRALFSE  108 (316)
Q Consensus        81 ~~v~~lv-~~~~~~~~N~~G~Tp~~l~~~  108 (316)
                            + .+.+++.+|.+|+||++++.+
T Consensus       131 ------l~~ga~~~~~d~~g~t~l~~A~~  153 (244)
T 3ui2_A          131 ------VELGADIEVEDERGLTALELARE  153 (244)
T ss_dssp             ------HHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             ------HHCCCCCCCCCCCCCcHHHHHHH
Confidence                  3 246778899999999998864

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.26  E-value=1.8e-12  Score=117.64  Aligned_cols=81  Identities=21%  Similarity=0.246  Sum_probs=66.4

Q ss_pred             cccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhHhH
Q 021201            3 KCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQA   82 (316)
Q Consensus         3 ~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~~~   82 (316)
                      ..|..|+||||+|+.+|+.+++++|++  .+++    +|.+|.+|+||||+|+..|+.+++++|                
T Consensus       178 ~~~~~g~tpLh~A~~~g~~~~v~~Ll~--~gad----~n~~d~~G~TpLh~A~~~g~~~iv~~L----------------  235 (276)
T 4hbd_A          178 KASQAGQTALMLAVSHGRVDVVKALLA--CEAD----VNVQDDDGSTALMCACEHGHKEIAGLL----------------  235 (276)
T ss_dssp             CCTTTCCCHHHHHHHTTCHHHHHHHHH--TTCC----TTCCCTTSCCHHHHHHHHTCHHHHHHH----------------
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHh--CCCC----CCCCCCCCCCHHHHHHHCCCHHHHHHH----------------
Confidence            457779999999999999999999999  7654    688999999999999999886655443                


Q ss_pred             HHHhc--cchhhhhhccCCCCccccccch
Q 021201           83 VKKVV--PRKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        83 v~~lv--~~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                          +  .+.+++.+|++|+||++++...
T Consensus       236 ----l~~~gad~~~~d~~g~TpL~~A~~~  260 (276)
T 4hbd_A          236 ----LAVPSCDISLTDRDGSTALMVALDA  260 (276)
T ss_dssp             ----HTSTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             ----HhcCCCCCcCcCCCCCCHHHHHHHc
Confidence                3  2467889999999999998765

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.25  E-value=1.8e-12  Score=110.29  Aligned_cols=103  Identities=18%  Similarity=0.111  Sum_probs=84.5

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cC----------
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SG----------   68 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~g----------   68 (316)
                      ++.+|..|+||||+|+.+|+.+++++|++  .+..    ++.+|.+|+||||+|+..++.++++.|  .|          
T Consensus        61 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g  134 (192)
T 2rfm_A           61 LEDKDIEGSTALIWAVKNNRLGIAEKLLS--KGSN----VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEG  134 (192)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHH--HTCC----TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTC
T ss_pred             cccccccCccHHHHHHHcCCHHHHHHHHH--CCCC----CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Confidence            35678899999999999999999999999  7654    689999999999999999998887765  22          


Q ss_pred             -chHHhHHHhhhHhHHHHhcc-chhhhhhccCCCCccccccch
Q 021201           69 -SALQMQRELLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        69 -aal~~~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                       .+++.....+..+.++.++. +.+++.+|.+|+||++++...
T Consensus       135 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~  177 (192)
T 2rfm_A          135 ETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIF  177 (192)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHh
Confidence             35566666666677776664 467889999999999998754

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.25  E-value=4.8e-12  Score=110.44  Aligned_cols=105  Identities=16%  Similarity=0.046  Sum_probs=66.9

Q ss_pred             ccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhh-hhhcccCCCCCChHHHHHhhhCCCCccccc--cC----------
Q 021201            2 WKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIA-DLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SG----------   68 (316)
Q Consensus         2 ~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~-~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~g----------   68 (316)
                      +.+|.+|+||||+|+++|+.+++++|++  .+... ....+.+|.+|+||||+|+..|+.++++.|  .|          
T Consensus        31 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~  108 (232)
T 2rfa_A           31 HQRGAMGETALHIAALYDNLEAAMVLME--AAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGS  108 (232)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHH--HCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSG
T ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHH--cCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCc
Confidence            5667888888888888888888888888  54431 111256777888888888888877766544  11          


Q ss_pred             --------------chHHhHHHhhhHhHHHHhcc-chhhhhhccCCCCccccccc
Q 021201           69 --------------SALQMQRELLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSE  108 (316)
Q Consensus        69 --------------aal~~~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~  108 (316)
                                    .+++...+.+..+.++.++. +.+++.+|.+|+||++++..
T Consensus       109 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~  163 (232)
T 2rfa_A          109 VFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILIL  163 (232)
T ss_dssp             GGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHT
T ss_pred             ceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence                          23333333344444554443 35566667777777776554

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.24  E-value=3.1e-12  Score=113.88  Aligned_cols=103  Identities=24%  Similarity=0.199  Sum_probs=74.4

Q ss_pred             ccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cC-----------
Q 021201            2 WKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SG-----------   68 (316)
Q Consensus         2 ~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~g-----------   68 (316)
                      +.+|..|+||||+|+.+|+.+++++|++  .+..   .++.+|.+|+||||+|+..++.++++.|  .|           
T Consensus        84 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--~~~~---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~  158 (253)
T 1yyh_A           84 NIQDNMGRTPLHAAVSADAQGVFQILIR--NRAT---DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK  158 (253)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHHH--STTS---CTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSC
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHH--cCCC---CccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCC
Confidence            5678888999999999999999999988  5431   2578888888888888888888777655  22           


Q ss_pred             chHHhHHHhhhHhHHHHhcc-chhhhhhccCCCCccccccch
Q 021201           69 SALQMQRELLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        69 aal~~~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                      .+++.....+..+.++.++. +.+++.+|.+|+||++++...
T Consensus       159 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~  200 (253)
T 1yyh_A          159 SALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAARE  200 (253)
T ss_dssp             BHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHC
Confidence            34555545555555665553 456778888888888877653

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.24  E-value=1.7e-12  Score=106.95  Aligned_cols=101  Identities=18%  Similarity=0.082  Sum_probs=67.1

Q ss_pred             ccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cC-----------
Q 021201            2 WKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SG-----------   68 (316)
Q Consensus         2 ~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~g-----------   68 (316)
                      +.+|..|+||||+|+. |+.+++++|++  .+.+    +|.+|.+|+||||+|+..++.++++.+  .|           
T Consensus        32 ~~~~~~g~t~L~~A~~-~~~~~v~~Ll~--~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  104 (162)
T 1ihb_A           32 NAQNGFGRTALQVMKL-GNPEIARRLLL--RGAN----PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGN  104 (162)
T ss_dssp             TCCCTTSCCHHHHCCS-SCHHHHHHHHH--TTCC----TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             cccCccCccHHHHHHc-CcHHHHHHHHH--cCCC----CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC
Confidence            4567777888888777 77888888877  5543    577777888888888877776666554  12           


Q ss_pred             chHHhHHHhhhHhHHHHhccc-h-hhhhhccCCCCccccccch
Q 021201           69 SALQMQRELLWFQAVKKVVPR-K-LAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        69 aal~~~~el~w~~~v~~lv~~-~-~~~~~N~~G~Tp~~l~~~~  109 (316)
                      .+++.....+..+.++.++.. . ..+.+|.+|+||++++...
T Consensus       105 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~  147 (162)
T 1ihb_A          105 LPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLY  147 (162)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHT
T ss_pred             CHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHc
Confidence            233444444444555555532 2 2578889999999987654

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.24  E-value=2.2e-12  Score=101.25  Aligned_cols=97  Identities=27%  Similarity=0.365  Sum_probs=62.1

Q ss_pred             CCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cC-----------chHHh
Q 021201            7 NRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SG-----------SALQM   73 (316)
Q Consensus         7 ~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~g-----------aal~~   73 (316)
                      +|+||||+|+++|+.+++++|++  .+..    ++.+|.+|+||||+|+..++.++++.+  .|           .+++.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~--~~~~----~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~   74 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLE--AGAD----VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHL   74 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHH--HTCC----TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHH--cCCC----CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHH
Confidence            46777777777777777777777  5442    466777777777777777766655544  11           23333


Q ss_pred             HHHhhhHhHHHHhcc-chhhhhhccCCCCccccccch
Q 021201           74 QRELLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        74 ~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                      ....+..+.++.++. +.+++.+|.+|+||++++...
T Consensus        75 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~  111 (126)
T 1n0r_A           75 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN  111 (126)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             HHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence            333333444554443 456788899999999987654

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.24  E-value=2.5e-12  Score=113.86  Aligned_cols=79  Identities=22%  Similarity=0.185  Sum_probs=46.1

Q ss_pred             ccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhHh
Q 021201            2 WKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQ   81 (316)
Q Consensus         2 ~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~~   81 (316)
                      +.+|.+|+||||+|+.+|+.+++++|++  .+++    +|.+|.+|+||||+|+..++.+++                  
T Consensus        64 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~--~ga~----~~~~d~~g~tpL~~A~~~~~~~~v------------------  119 (239)
T 1ycs_B           64 SLPNDEGITALHNAVCAGHTEIVKFLVQ--FGVN----VNAADSDGWTPLHCAASCNNVQVC------------------  119 (239)
T ss_dssp             CCCCTTSCCHHHHHHHHTCHHHHHHHHH--HTCC----TTCCCTTCCCHHHHHHHTTCHHHH------------------
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHHHHHH--cCCC----CCccCCCCCCHHHHHHHcCCHHHH------------------
Confidence            3445556666666666666666666665  4432    455566666666666655554433                  


Q ss_pred             HHHHhc-cchhhhhhccCCC-Cccccc
Q 021201           82 AVKKVV-PRKLAEAKNKKGL-TPRALF  106 (316)
Q Consensus        82 ~v~~lv-~~~~~~~~N~~G~-Tp~~l~  106 (316)
                        +.++ .+.+++.+|.+|. ||++++
T Consensus       120 --~~Ll~~ga~~~~~~~~~~~t~l~~a  144 (239)
T 1ycs_B          120 --KFLVESGAAVFAMTYSDMQTAADKC  144 (239)
T ss_dssp             --HHHHHTTCCTTCCCSSSCCCHHHHC
T ss_pred             --HHHHHcCCCcceecCCCCcchHHHH
Confidence              3333 2356677777666 998877

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.23  E-value=5.8e-12  Score=109.70  Aligned_cols=102  Identities=20%  Similarity=0.230  Sum_probs=69.7

Q ss_pred             ccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cC-----------
Q 021201            2 WKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SG-----------   68 (316)
Q Consensus         2 ~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~g-----------   68 (316)
                      +.+|..|+||||+|+++|+.+++++|++  .+..    ++.+|.+|.||||+|+..++.++++.+  .|           
T Consensus        67 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~----~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~  140 (231)
T 3aji_A           67 NDKDDAGWSPLHIAASAGXDEIVKALLV--KGAH----VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDA  140 (231)
T ss_dssp             CCCCTTSCCHHHHHHHHTCHHHHHHHHH--TTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             CCcCCCCCCHHHHHHHcCHHHHHHHHHH--cCCC----CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC
Confidence            5567788888888888888888888888  5543    577888888888888888877766544  12           


Q ss_pred             chHHhHHHhhhHhHHHHhcc-chhhhhhccCCCCccccccch
Q 021201           69 SALQMQRELLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        69 aal~~~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                      .+++.....+..+.++.++. +.+++.+|.+|+||++++...
T Consensus       141 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  182 (231)
T 3aji_A          141 TAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDE  182 (231)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHT
T ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHC
Confidence            34444444444555555543 355677777788888776543

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.23  E-value=5.5e-12  Score=111.50  Aligned_cols=94  Identities=16%  Similarity=0.025  Sum_probs=46.1

Q ss_pred             CCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cC-----------chHHh
Q 021201            7 NRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SG-----------SALQM   73 (316)
Q Consensus         7 ~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~g-----------aal~~   73 (316)
                      +|.|+||+|+++|+.+++++|++  .+.+    +|.+|.+|+||||+|+..|+.++++.|  .|           .+++.
T Consensus        20 ~~~t~L~~A~~~g~~~~v~~Ll~--~g~~----~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~   93 (229)
T 2vge_A           20 NPLVLLLDAALTGELEVVQQAVK--EMND----PSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHC   93 (229)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHH--HSSC----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             chhHHHHHHHHcCCHHHHHHHHh--cCCC----CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            34444555555555555555554  3322    344455555555555555444444332  11           12222


Q ss_pred             HHHhhhHhHHHHhcc-chhhhhhc-cCCCCccccc
Q 021201           74 QRELLWFQAVKKVVP-RKLAEAKN-KKGLTPRALF  106 (316)
Q Consensus        74 ~~el~w~~~v~~lv~-~~~~~~~N-~~G~Tp~~l~  106 (316)
                      ....+..+.++.++. +.+++.++ .+|+||++++
T Consensus        94 A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A  128 (229)
T 2vge_A           94 AASCNDTVICMALVQHGAAIFATTLSDGATAFEKC  128 (229)
T ss_dssp             HHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGC
T ss_pred             HHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHH
Confidence            222233334444443 35667765 6999999987

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.23  E-value=6.2e-12  Score=109.91  Aligned_cols=57  Identities=18%  Similarity=0.211  Sum_probs=27.5

Q ss_pred             cccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccc
Q 021201            3 KCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLN   64 (316)
Q Consensus         3 ~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~   64 (316)
                      .+|..|+||||+|+.+|+.+++++|++  .+..   .++.+|.+|.||||+|+..++.++++
T Consensus        72 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~--~~~~---~~~~~~~~g~t~L~~A~~~~~~~~~~  128 (237)
T 3b7b_A           72 PKDAEGSTCLHLAAKKGHYEVVQYLLS--NGQM---DVNCQDDGGWTPMIWATEYKHVDLVK  128 (237)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHT--TTCC---CTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHh--CCCC---CcccCCCCCCCHHHHHHHcCCHHHHH
Confidence            344555555555555555555555555  3210   13444555555555555554444433

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.22  E-value=4.7e-12  Score=95.44  Aligned_cols=60  Identities=27%  Similarity=0.354  Sum_probs=53.4

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV   66 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L   66 (316)
                      ++.+|.+|+||||+|+.+|+.+++++|++  .+++    +|.+|.+|+||||+|+..++.++++.|
T Consensus        28 ~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~--~ga~----~~~~d~~g~t~l~~A~~~~~~~~~~~L   87 (93)
T 1n0q_A           28 VNAKDKNGRTPLHLAARNGHLEVVKLLLE--AGAD----VNAKDKNGRTPLHLAARNGHLEVVKLL   87 (93)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHH--TTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CcccCCCCCCHHHHHHHcCCHHHHHHHHH--cCCC----CCccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            46789999999999999999999999999  7764    689999999999999999997766554

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.22  E-value=2.9e-12  Score=113.96  Aligned_cols=84  Identities=17%  Similarity=0.105  Sum_probs=63.7

Q ss_pred             cccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCC--------------CCCChHHHHHhhhCCCCccccccC
Q 021201            3 KCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTD--------------GEGNNILHLAGKLAPPDRLNVVSG   68 (316)
Q Consensus         3 ~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D--------------~~GnTpLHlAa~~~~~~~v~~L~g   68 (316)
                      ..|.+|+||||+|+.+|+.+++++|++  .+++    +|.+|              .+|+||||+|+..|+.++++.|  
T Consensus        88 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~--~ga~----~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L--  159 (260)
T 3jxi_A           88 DVYYRGQTALHIAIERRCKHYVELLVE--KGAD----VHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL--  159 (260)
T ss_dssp             CSSEESBCHHHHHHHTTCHHHHHHHHH--TTCC----TTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHH--
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHh--CCCC----cCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHH--
Confidence            345689999999999999999999999  7654    67787              6899999999999997766544  


Q ss_pred             chHHhHHHhhhHhHHHHhccchhhhhhccCCCCccccccc
Q 021201           69 SALQMQRELLWFQAVKKVVPRKLAEAKNKKGLTPRALFSE  108 (316)
Q Consensus        69 aal~~~~el~w~~~v~~lv~~~~~~~~N~~G~Tp~~l~~~  108 (316)
                                    ++..-.+.+++.+|.+|+||++++..
T Consensus       160 --------------l~~~~~ga~~~~~d~~g~TpLh~A~~  185 (260)
T 3jxi_A          160 --------------TENGHKQADLRRQDSRGNTVLHALVA  185 (260)
T ss_dssp             --------------HHCSSCCCCTTCCCTTSCCHHHHHHH
T ss_pred             --------------HhccccCCCCcccCCCCCcHHHHHHH
Confidence                          11000234567777777777777653

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.21  E-value=4.9e-12  Score=112.99  Aligned_cols=87  Identities=20%  Similarity=0.226  Sum_probs=71.1

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhH
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWF   80 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~   80 (316)
                      ++.+|.+|+||||+|+++|+.+++++|++  .+.... .+|.+|.+|+||||+|+..|+.++++.|              
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~-~~~~~~~~g~t~L~~A~~~g~~~~v~~L--------------   64 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLG--FSAGHE-YLDLQNDLGQTALHLAAILGEASTVEKL--------------   64 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHH--HHTTSG-GGGCCCTTSCCHHHHHHHHTCHHHHHHH--------------
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHh--cCCCcc-cccccCCCCCCHHHHHHHcCCHHHHHHH--------------
Confidence            46789999999999999999999999999  665422 2589999999999999999997665544              


Q ss_pred             hHHHHhccchhhhhhccCCCCccccccch
Q 021201           81 QAVKKVVPRKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        81 ~~v~~lv~~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                        ++   .+.+++.+|.+|.||++++...
T Consensus        65 --l~---~ga~~~~~~~~g~tpL~~A~~~   88 (282)
T 1oy3_D           65 --YA---AGAGVLVAERGGHTALHLACRV   88 (282)
T ss_dssp             --HH---TTCCSSCCCTTSCCHHHHHTTT
T ss_pred             --HH---cCCCCCCCCCCCCCHHHHHHHc
Confidence              11   2356788899999999988754

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.21  E-value=6.5e-12  Score=109.77  Aligned_cols=102  Identities=21%  Similarity=0.166  Sum_probs=77.5

Q ss_pred             ccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCC-CCCChHHHHHhhhCCCCccccc--cC----------
Q 021201            2 WKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTD-GEGNNILHLAGKLAPPDRLNVV--SG----------   68 (316)
Q Consensus         2 ~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D-~~GnTpLHlAa~~~~~~~v~~L--~g----------   68 (316)
                      +..|..|+||||+|+.+|+.+++++|++  .+..    ++.+| .+|+||||+|+..++.++++.|  .|          
T Consensus       110 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~--~g~~----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g  183 (241)
T 1k1a_A          110 EARNYDGLTALHVAVNTECQETVQLLLE--RGAD----IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSG  183 (241)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHHH--TTCC----TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTS
T ss_pred             cccCcCCCcHHHHHHHcCCHHHHHHHHH--cCCC----cccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC
Confidence            4567889999999999999999999988  6553    57777 7889999999998888777655  22          


Q ss_pred             -chHHhHHHhhhHhHHHHhcc-chhhhhhccCCCCccccccch
Q 021201           69 -SALQMQRELLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        69 -aal~~~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                       .+++.....+..+.++.++. +.+++.+|.+|+||++++.+.
T Consensus       184 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~  226 (241)
T 1k1a_A          184 SSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSR  226 (241)
T ss_dssp             CBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhc
Confidence             34555555555566666654 467889999999999998765

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.20  E-value=7e-12  Score=111.32  Aligned_cols=84  Identities=19%  Similarity=0.090  Sum_probs=65.2

Q ss_pred             cccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCC-------------CChHHHHHhhhCCCCccccccCc
Q 021201            3 KCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGE-------------GNNILHLAGKLAPPDRLNVVSGS   69 (316)
Q Consensus         3 ~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~-------------GnTpLHlAa~~~~~~~v~~L~ga   69 (316)
                      +.|.+|+||||+|+++|+.+++++|++  .+++    +|.+|.+             |+||||+|+..|+.++++.|   
T Consensus        85 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~--~ga~----~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~L---  155 (256)
T 2etb_A           85 DEFYQGHSALHIAIEKRSLQCVKLLVE--NGAD----VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYL---  155 (256)
T ss_dssp             STTTTTCCHHHHHHHTTCHHHHHHHHH--TTCC----TTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHH---
T ss_pred             cccccCCCHHHHHHHcCCHHHHHHHHH--cCCC----CCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHH---
Confidence            346789999999999999999999999  7654    6788876             99999999999987765544   


Q ss_pred             hHHhHHHhhhHhHHHHhccchhhhhhccCCCCccccccc
Q 021201           70 ALQMQRELLWFQAVKKVVPRKLAEAKNKKGLTPRALFSE  108 (316)
Q Consensus        70 al~~~~el~w~~~v~~lv~~~~~~~~N~~G~Tp~~l~~~  108 (316)
                                   ++..-.+.+++.+|.+|+||++++..
T Consensus       156 -------------l~~~~~ga~~n~~d~~g~TpLh~A~~  181 (256)
T 2etb_A          156 -------------LENPHQPASLEATDSLGNTVLHALVM  181 (256)
T ss_dssp             -------------HHCSSCCCCTTCCCTTSCCHHHHHHH
T ss_pred             -------------HhccccCCCcCccCCCCCCHHHHHHH
Confidence                         11000245677788888888887764

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.19  E-value=9e-12  Score=106.12  Aligned_cols=59  Identities=20%  Similarity=0.187  Sum_probs=42.6

Q ss_pred             ccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc
Q 021201            2 WKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV   66 (316)
Q Consensus         2 ~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L   66 (316)
                      +.+|.+|+||||+|+++|+.+++++|++  .+.+    ++.+|.+|+||||+|+..++.++++.+
T Consensus        33 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~----~~~~~~~g~t~l~~A~~~~~~~~~~~L   91 (201)
T 3hra_A           33 DEVDTEGNTPLNIAVHNNDIEIAKALID--RGAD----INLQNSISDSPYLYAGAQGRTEILAYM   91 (201)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHHH--TTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHH--cCCC----CCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            4567777888888888888888888877  5543    577777788888888877776655443

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.19  E-value=9.2e-12  Score=109.20  Aligned_cols=107  Identities=17%  Similarity=0.136  Sum_probs=80.8

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhh--hhhcccCCCCCChHHHHHhhhCCCCccccc--cC--------
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIA--DLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SG--------   68 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~--~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~g--------   68 (316)
                      ++.+|..|+||||+|+++|+.+++++|++  .+...  ...++..|.+|+||||+|+..++.++++.|  .|        
T Consensus        71 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  148 (236)
T 1ikn_D           71 PELRDFRGNTPLHLACEQGCLASVGVLTQ--SCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEP  148 (236)
T ss_dssp             SCCCCTTCCCHHHHHHHHTCHHHHHHHHH--STTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT
T ss_pred             CCCcCCCCCCHHHHHHHcCCHHHHHHHHh--cccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Confidence            35678899999999999999999999998  54321  123578899999999999999988777655  12        


Q ss_pred             ----chHHhHHHhhhHhHHHHhcc-chhhhhhccCCCCccccccch
Q 021201           69 ----SALQMQRELLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        69 ----aal~~~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                          .+++.....+..+.++.++. +.+++.+|.+|+||++++...
T Consensus       149 ~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~  194 (236)
T 1ikn_D          149 CNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGR  194 (236)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTS
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHcc
Confidence                34555555555666766664 467889999999999998764

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.18  E-value=4.2e-12  Score=100.49  Aligned_cols=81  Identities=20%  Similarity=0.107  Sum_probs=64.5

Q ss_pred             ccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhHhHH
Q 021201            4 CDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQAV   83 (316)
Q Consensus         4 ~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~~~v   83 (316)
                      .+..|+|+||+|+++|+.+++++|++  .+..    +|.+|.+|+||||+|+..++.++++.|                +
T Consensus         3 ~~~~~~~~l~~A~~~~~~~~v~~ll~--~~~~----~~~~~~~g~t~L~~A~~~~~~~~v~~L----------------l   60 (123)
T 3aaa_C            3 LGSMCDKEFMWALKNGDLDEVKDYVA--KGED----VNRTLEGGRKPLHYAADCGQLEILEFL----------------L   60 (123)
T ss_dssp             ----CHHHHHHHHHTTCHHHHHHHHH--TTCC----TTSCCTTSSCHHHHHHHTTCHHHHHHH----------------H
T ss_pred             cccccchHHHHHHHcCCHHHHHHHHH--cCCC----cCccCCCCCcHHHHHHHcCCHHHHHHH----------------H
Confidence            46789999999999999999999999  6653    689999999999999999986655443                1


Q ss_pred             HHhccchhhhhhccCCCCccccccch
Q 021201           84 KKVVPRKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        84 ~~lv~~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                         -.+.+++.+|.+|+||++++...
T Consensus        61 ---~~g~~~~~~d~~g~tpL~~A~~~   83 (123)
T 3aaa_C           61 ---LKGADINAPDKHHITPLLSAVYE   83 (123)
T ss_dssp             ---TTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             ---HcCCCCCcCCCCCCCHHHHHHHc
Confidence               12356788999999999988754

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.18  E-value=8.4e-12  Score=112.00  Aligned_cols=84  Identities=19%  Similarity=0.136  Sum_probs=67.4

Q ss_pred             ccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCC--------------CCChHHHHHhhhCCCCccccccCc
Q 021201            4 CDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDG--------------EGNNILHLAGKLAPPDRLNVVSGS   69 (316)
Q Consensus         4 ~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~--------------~GnTpLHlAa~~~~~~~v~~L~ga   69 (316)
                      .|..|+||||+|+++|+.+++++|++  .+++    +|.+|.              +|+||||+|+..|+.+++++|   
T Consensus        97 ~d~~g~tpL~~A~~~g~~~~v~~Ll~--~ga~----~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L---  167 (273)
T 2pnn_A           97 SYYKGQTALHIAIERRNMTLVTLLVE--NGAD----VQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFL---  167 (273)
T ss_dssp             TTTTTCCHHHHHHHTTCHHHHHHHHH--TTCC----TTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHH---
T ss_pred             ccCCCCCHHHHHHHcCCHHHHHHHHH--CCCC----cCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHH---
Confidence            57789999999999999999999999  7654    677876              899999999999987665544   


Q ss_pred             hHHhHHHhhhHhHHHHhccchhhhhhccCCCCccccccch
Q 021201           70 ALQMQRELLWFQAVKKVVPRKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        70 al~~~~el~w~~~v~~lv~~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                                   ++....+.+++.+|.+|+||++++...
T Consensus       168 -------------l~~~~~gad~~~~d~~g~tpLh~A~~~  194 (273)
T 2pnn_A          168 -------------LQNSWQPADISARDSVGNTVLHALVEV  194 (273)
T ss_dssp             -------------HHCSSCCCCTTCCCTTSCCHHHHHHHH
T ss_pred             -------------HhcccCCCCceeeCCCCCcHHHHHHHc
Confidence                         110002467888999999999988753

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.18  E-value=1.2e-11  Score=114.77  Aligned_cols=83  Identities=17%  Similarity=0.023  Sum_probs=67.5

Q ss_pred             cc-ccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCC---CCccccccCchHHhHHHh
Q 021201            2 WK-CDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAP---PDRLNVVSGSALQMQREL   77 (316)
Q Consensus         2 ~~-~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~---~~~v~~L~gaal~~~~el   77 (316)
                      +. +|.+|+||||+|+.+|+.+++++|++  .+++    +|.+|.+|+||||+|+..|+   .+.+..+           
T Consensus       124 n~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~--~Gad----~n~~d~~g~TpLh~A~~~g~~~~~~~~~~l-----------  186 (327)
T 1sw6_A          124 NIPVDEHGNTPLHWLTSIANLELVKHLVK--HGSN----RLYGDNMGESCLVKAVKSVNNYDSGTFEAL-----------  186 (327)
T ss_dssp             CSCCSTTCCCHHHHHHHTTCHHHHHHHHH--TTCC----TTBCCTTCCCHHHHHHHSSHHHHTTCHHHH-----------
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHH--cCCC----CCCcCCCCCCHHHHHHHhcccccHHHHHHH-----------
Confidence            45 79999999999999999999999999  7764    79999999999999999887   4443322           


Q ss_pred             hhHhHHHHhccchhhhhhccCCCCccccccc
Q 021201           78 LWFQAVKKVVPRKLAEAKNKKGLTPRALFSE  108 (316)
Q Consensus        78 ~w~~~v~~lv~~~~~~~~N~~G~Tp~~l~~~  108 (316)
                           ++...  ..++.+|.+|+||++++..
T Consensus       187 -----l~~~~--~~~~~~d~~g~tpLh~A~~  210 (327)
T 1sw6_A          187 -----LDYLY--PCLILEDSMNRTILHHIII  210 (327)
T ss_dssp             -----HHHHG--GGGGEECTTCCCHHHHHHH
T ss_pred             -----HHhhh--ccccCCCCCCCCHHHHHHH
Confidence                 22111  3578899999999998865

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.18  E-value=6.3e-12  Score=103.13  Aligned_cols=95  Identities=21%  Similarity=0.128  Sum_probs=74.0

Q ss_pred             CCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cC-----------chHHhH
Q 021201            8 RYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SG-----------SALQMQ   74 (316)
Q Consensus         8 G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~g-----------aal~~~   74 (316)
                      +.|+||.|+++|+.+++++|++  .+..    ++ .|.+|+||||+|+..|+.++++.+  .|           .+++..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~--~g~~----~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   74 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMA--NGAP----FT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMA   74 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHH--HTCC----CC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHH--cCCC----CC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            4689999999999999999999  6653    33 699999999999999998877665  22           345555


Q ss_pred             HHhhhHhHHHHhcc-chhhhhhccCCCCccccccch
Q 021201           75 RELLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        75 ~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                      ...+..+.++.++. +.+++.+|.+|+||++++...
T Consensus        75 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  110 (153)
T 1awc_B           75 ASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEH  110 (153)
T ss_dssp             HHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             HHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            55555666666664 467888999999999987654

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.18  E-value=2.8e-12  Score=118.32  Aligned_cols=81  Identities=26%  Similarity=0.384  Sum_probs=68.3

Q ss_pred             ccCCCCcHHhHHHHC---CCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhH
Q 021201            4 CDENRYTIFHIAVSN---RQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWF   80 (316)
Q Consensus         4 ~D~~G~T~LH~Av~~---~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~   80 (316)
                      .|..|+||||+|+..   ++.+++++|++  .+++    +|.+|.+|+||||+|+..|+.+++++|              
T Consensus       186 ~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~--~gad----vn~~d~~G~TpLh~A~~~g~~~~v~~L--------------  245 (301)
T 2b0o_E          186 AQAPEELVLHLAVKVANQASLPLVDFIIQ--NGGH----LDAKAADGNTALHYAALYNQPDCLKLL--------------  245 (301)
T ss_dssp             SCSCEECHHHHHHHTCCTTTHHHHHHHHH--HSSC----TTCCCTTCCCHHHHHHHTTCHHHHHHH--------------
T ss_pred             cCCCCccHHHHHHHhcccCcHHHHHHHHh--cCCC----CCCCCCCCCCHHHHHHHcCCHHHHHHH--------------
Confidence            588999999999997   89999999999  7764    799999999999999999997766554              


Q ss_pred             hHHHHhccchhhhhhccCCCCccccccch
Q 021201           81 QAVKKVVPRKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        81 ~~v~~lv~~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                        ++   .+++++.+|.+|+||++++...
T Consensus       246 --l~---~gad~~~~d~~G~TpL~~A~~~  269 (301)
T 2b0o_E          246 --LK---GRALVGTVNEAGETALDIARKK  269 (301)
T ss_dssp             --HH---TTCCCSCCCTTSCCHHHHHHHH
T ss_pred             --HH---cCCCCCCcCCCCCCHHHHHHHc
Confidence              11   2456788999999999998764

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.17  E-value=1.1e-11  Score=115.16  Aligned_cols=87  Identities=17%  Similarity=0.169  Sum_probs=67.5

Q ss_pred             CccccCCCCcHHhHHHH----CCCHHHHHHHhhcchhhhh----------------------------------------
Q 021201            1 MWKCDENRYTIFHIAVS----NRQVELFKFIDADDMKAIA----------------------------------------   36 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~----~~~~~iv~~Ll~~~~~~~~----------------------------------------   36 (316)
                      ++.+|.+|+||||+|++    +|+.+++++|++  .+...                                        
T Consensus       194 ~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~--~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~L  271 (327)
T 1sw6_A          194 LILEDSMNRTILHHIIITSGMTGCSAAAKYYLD--ILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWI  271 (327)
T ss_dssp             GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHH--HHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHH
T ss_pred             ccCCCCCCCCHHHHHHHHccccccHHHHHHHHH--HHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHH
Confidence            35679999999999999    999999999998  53210                                        


Q ss_pred             -hhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhHhHHHHhccchhhhhhccCCCCccccccc
Q 021201           37 -DLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQAVKKVVPRKLAEAKNKKGLTPRALFSE  108 (316)
Q Consensus        37 -~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~~~v~~lv~~~~~~~~N~~G~Tp~~l~~~  108 (316)
                       +..+|.+|.+|+||||+|+..|+.+++++|                ++   .+++++.+|++|+||++++.+
T Consensus       272 l~~~~n~~d~~G~TpLh~A~~~g~~~~v~~L----------------l~---~Gad~~~~d~~G~TpL~~A~~  325 (327)
T 1sw6_A          272 IANMLNAQDSNGDTCLNIAARLGNISIVDAL----------------LD---YGADPFIANKSGLRPVDFGAG  325 (327)
T ss_dssp             HHHTTTCCCTTSCCHHHHHHHHCCHHHHHHH----------------HH---TTCCTTCCCTTSCCGGGGTCC
T ss_pred             HHhCCCCCCCCCCCHHHHHHHcCCHHHHHHH----------------HH---cCCCCcccCCCCCCHHHHHHh
Confidence             002688889999999999998886665444                11   246789999999999999864

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.17  E-value=6.5e-12  Score=98.04  Aligned_cols=77  Identities=21%  Similarity=0.195  Sum_probs=62.3

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhH
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWF   80 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~   80 (316)
                      ++.+|..|+||||+|+.+++.+++++|++  .+.+    ++.+|.+|+||||+|+..++.++++.|              
T Consensus        35 ~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~--~g~~----~~~~d~~g~tpl~~A~~~~~~~~~~~L--------------   94 (115)
T 2l6b_A           35 VNARSKDGNTPLHLAAKNGHAEIVKLLLA--KGAD----VNARSKDGNTPEHLAKKNGHHEIVKLL--------------   94 (115)
T ss_dssp             SSCCCSSSCCTTHHHHTTTCHHHHHHHTT--TTCC----TTCCCTTCCCTTHHHHTTTCHHHHHHH--------------
T ss_pred             CCCcCCCCCCHHHHHHHcCcHHHHHHHHH--cCCC----CcccCCCCCCHHHHHHHCCCHHHHHHH--------------
Confidence            45678999999999999999999999999  7654    689999999999999999986655443              


Q ss_pred             hHHHHhc-cchhhhhhccCCCCcc
Q 021201           81 QAVKKVV-PRKLAEAKNKKGLTPR  103 (316)
Q Consensus        81 ~~v~~lv-~~~~~~~~N~~G~Tp~  103 (316)
                            + .+.+++.++.+|.+|.
T Consensus        95 ------l~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           95 ------DAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             ------HTTSSSHHHHSCCCC---
T ss_pred             ------HHcCCCCCcCCccccccc
Confidence                  2 2467888899998884

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.17  E-value=9.4e-12  Score=102.67  Aligned_cols=96  Identities=11%  Similarity=0.050  Sum_probs=55.2

Q ss_pred             ccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCCh-HHHHHhhhCCCCccccc--cC----------
Q 021201            2 WKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNN-ILHLAGKLAPPDRLNVV--SG----------   68 (316)
Q Consensus         2 ~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnT-pLHlAa~~~~~~~v~~L--~g----------   68 (316)
                      +.+|..|+||||+|+ +|+.+++++|++  .+.+    +|.+|.+|+| |||+|+..++.+++++|  .|          
T Consensus        39 ~~~~~~g~t~L~~A~-~~~~~~v~~Ll~--~g~~----~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g  111 (156)
T 1bi7_B           39 NAPNSYGRRPIQVMM-MGSARVAELLLL--HGAE----PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWG  111 (156)
T ss_dssp             TCCCSSSCCTTTSSC-TTCHHHHHHHHT--TTCC----CCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTC
T ss_pred             CCCCCCCCCHHHHHH-cCCHHHHHHHHH--cCCC----CCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCC
Confidence            456777888888874 788888888887  5543    6778888887 88888888877766654  12          


Q ss_pred             -chHHhHHHhhhHhHHHHhcc-chhhhhhccCCCCccc
Q 021201           69 -SALQMQRELLWFQAVKKVVP-RKLAEAKNKKGLTPRA  104 (316)
Q Consensus        69 -aal~~~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~  104 (316)
                       .+++.....+..+.++.++. +.+++.+|.+|.||.+
T Consensus       112 ~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~  149 (156)
T 1bi7_B          112 RLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAE  149 (156)
T ss_dssp             CCHHHHHHHHTCHHHHHHHSSCC---------------
T ss_pred             CCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccc
Confidence             34455545555566666664 4678899999999876

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.17  E-value=2.7e-11  Score=110.21  Aligned_cols=101  Identities=22%  Similarity=0.118  Sum_probs=75.5

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cC----------
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SG----------   68 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~g----------   68 (316)
                      ++.+|.+|+||||+|+++|+.+++++|++  .+.+    +|.+  +|+||||+|+..|+.++++.|  .|          
T Consensus        24 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~----~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g   95 (285)
T 3kea_A           24 TFKADVHGHSASYYAIADNNVRLVCTLLN--AGAL----KNLL--ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKG   95 (285)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHH--TTGG----GSCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTS
T ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHHh--CCCC----CCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC
Confidence            46789999999999999999999999999  7653    5666  499999999999998887765  22          


Q ss_pred             -chHHhHHHhhhHhHHHHhcc-chhhhhhccCC-CCccccccch
Q 021201           69 -SALQMQRELLWFQAVKKVVP-RKLAEAKNKKG-LTPRALFSEQ  109 (316)
Q Consensus        69 -aal~~~~el~w~~~v~~lv~-~~~~~~~N~~G-~Tp~~l~~~~  109 (316)
                       .+++.....+..+.++.++. +.+++.+|.+| .||++.+...
T Consensus        96 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~  139 (285)
T 3kea_A           96 NTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVML  139 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHT
T ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHc
Confidence             23444444445555555553 45677777777 6888776543

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.16  E-value=1.4e-11  Score=107.56  Aligned_cols=64  Identities=20%  Similarity=0.174  Sum_probs=49.5

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV   66 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L   66 (316)
                      ++.+|++|+||||+|+++|+.+++++|++  ........+|.+|.+|+||||+|+..|+.++++.|
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L   65 (241)
T 1k1a_A            2 ATRADEDGDTPLHIAVVQGNLPAVHRLVN--LFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL   65 (241)
T ss_dssp             -----CTTCCHHHHHHHTTCHHHHHHHHH--HHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHH--HHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHH
Confidence            35789999999999999999999999987  42222234789999999999999999998776654

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.16  E-value=7.5e-12  Score=109.78  Aligned_cols=105  Identities=18%  Similarity=0.161  Sum_probs=62.1

Q ss_pred             cccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cC-----------c
Q 021201            3 KCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SG-----------S   69 (316)
Q Consensus         3 ~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~g-----------a   69 (316)
                      .+|.+|+||||+|+.+|+.+++++|++  .+......+|.+|.+|+||||+|+..++.++++.|  .|           .
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t   80 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIR--QVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNT   80 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-------CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCC
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHH--HhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCC
Confidence            567777888888888887777777777  44322123577777778888888777777766655  22           2


Q ss_pred             hHHhHHHhhhHhHHHHhccc-------hhhhhhccCCCCccccccch
Q 021201           70 ALQMQRELLWFQAVKKVVPR-------KLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        70 al~~~~el~w~~~v~~lv~~-------~~~~~~N~~G~Tp~~l~~~~  109 (316)
                      +++.....+..+.++.++..       ...+.+|.+|.||++++...
T Consensus        81 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~  127 (236)
T 1ikn_D           81 PLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH  127 (236)
T ss_dssp             HHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHc
Confidence            34444444444555544432       22566777888888877654

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.16  E-value=1.6e-11  Score=106.20  Aligned_cols=103  Identities=24%  Similarity=0.199  Sum_probs=75.3

Q ss_pred             ccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cC-----------
Q 021201            2 WKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SG-----------   68 (316)
Q Consensus         2 ~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~g-----------   68 (316)
                      +.+|..|+||||+|+++|+.+++++|++  .+..   .++.+|.+|.||||+|+..++.++++.+  .|           
T Consensus        52 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--~~~~---~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~  126 (223)
T 2f8y_A           52 NIQDNMGRTPLHAAVSADAQGVFQILIR--NRAT---DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK  126 (223)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHH--BTTS---CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSC
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHHHHHH--cCCC---CcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCC
Confidence            5678889999999999999999999988  5431   2578888899999999988887776654  22           


Q ss_pred             chHHhHHHhhhHhHHHHhcc-chhhhhhccCCCCccccccch
Q 021201           69 SALQMQRELLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        69 aal~~~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                      .+++.....+..+.++.++. +.+++.+|.+|.||++++...
T Consensus       127 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  168 (223)
T 2f8y_A          127 SALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAARE  168 (223)
T ss_dssp             BHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHc
Confidence            34455544455566666553 456778888899998887654

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.16  E-value=1.6e-11  Score=106.92  Aligned_cols=102  Identities=18%  Similarity=0.237  Sum_probs=81.5

Q ss_pred             ccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cC-----------
Q 021201            2 WKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SG-----------   68 (316)
Q Consensus         2 ~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~g-----------   68 (316)
                      +.+|.+|+||||+|+.+|+.+++++|++  .+..    ++.+|.+|+||||+|+..++.++++.|  .|           
T Consensus        34 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  107 (231)
T 3aji_A           34 TRTDQDSRTALHWACSAGHTEIVEFLLQ--LGVP----VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGC  107 (231)
T ss_dssp             GCCCTTSCCHHHHHHHHTCHHHHHHHHH--TTCC----SCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             hcCCCCCCCHHHHHHHcCcHHHHHHHHH--hCCC----CCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCC
Confidence            4578999999999999999999999999  6653    689999999999999999998887765  22           


Q ss_pred             chHHhHHHhhhHhHHHHhcc-chhhhhhccCCCCccccccch
Q 021201           69 SALQMQRELLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        69 aal~~~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                      .+++.....+..+.++.++. +.+.+.+|.+|.||++.+...
T Consensus       108 t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~  149 (231)
T 3aji_A          108 TPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAK  149 (231)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc
Confidence            34555555555666666654 456788999999999988654

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.14  E-value=3.1e-12  Score=105.63  Aligned_cols=100  Identities=11%  Similarity=0.106  Sum_probs=78.5

Q ss_pred             cccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cC-----------c
Q 021201            3 KCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SG-----------S   69 (316)
Q Consensus         3 ~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~g-----------a   69 (316)
                      ..++.|+|+||+|+++|+.+++++|++  .+..    +|.+|.+|+||||+|+ .++.++++.|  .|           .
T Consensus         7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~--~g~~----~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~t   79 (156)
T 1bi7_B            7 SSMEPSADWLATAAARGRVEEVRALLE--AGAN----PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLT   79 (156)
T ss_dssp             ---CCSTTHHHHHHHHTCHHHHHHHHT--TTCC----TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCC
T ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHH--cCCC----CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCc
Confidence            467889999999999999999999999  6653    6899999999999985 7777776654  11           3


Q ss_pred             -hHHhHHHhhhHhHHHHhcc-chhhhhhccCCCCccccccch
Q 021201           70 -ALQMQRELLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        70 -al~~~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                       +++.....+..+.++.++. +.+++.+|.+|+||++++...
T Consensus        80 tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~  121 (156)
T 1bi7_B           80 RPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEEL  121 (156)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHh
Confidence             6776666666677776664 467889999999999988654

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.14  E-value=3.4e-11  Score=107.06  Aligned_cols=126  Identities=15%  Similarity=0.163  Sum_probs=90.6

Q ss_pred             cccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cC------------
Q 021201            3 KCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SG------------   68 (316)
Q Consensus         3 ~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~g------------   68 (316)
                      ..|.+|+||||+|+++|+.+++++|++  .+.+    +|.+|.+|+||||+|+..++.++++.|  .|            
T Consensus        52 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~  125 (253)
T 1yyh_A           52 QTDRTGETALHLAARYSRSDAAKRLLE--ASAD----ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT  125 (253)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHH--TTCC----TTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCC
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHH--cCCC----CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCC
Confidence            358899999999999999999999999  7654    689999999999999999998877655  22            


Q ss_pred             chHHhHHHhhhHhHHHHhcc-chhhhhhccCCCCccccccchh-hh----hhhhhcc--cccccchhHHHHHHH
Q 021201           69 SALQMQRELLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSEQH-RD----LKEKGEK--WMKDTASSCMIVATL  134 (316)
Q Consensus        69 aal~~~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~~~-~~----l~~~~~k--~lk~t~~s~lvvA~L  134 (316)
                      .+++.....+..+.++.++. +.+++.+|.+|.||++++.... .+    +.+.+.+  .......+.+..|+.
T Consensus       126 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~  199 (253)
T 1yyh_A          126 TPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAR  199 (253)
T ss_dssp             CHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence            34555555455556666654 4678899999999999986542 22    3333322  122344555666654

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.14  E-value=2.3e-11  Score=110.51  Aligned_cols=100  Identities=10%  Similarity=-0.000  Sum_probs=60.3

Q ss_pred             ccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cC-----------
Q 021201            2 WKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SG-----------   68 (316)
Q Consensus         2 ~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~g-----------   68 (316)
                      +.+|.+|+||||+|+.+|+.+++++|++  .+..    +|.+|.+|+||||+|+..|+.++++.|  .|           
T Consensus        53 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~--~g~~----~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~  126 (285)
T 3d9h_A           53 MGDAVSDWSPMHEAAIHGHQLSLRNLIS--QGWA----VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWH  126 (285)
T ss_dssp             CSSSCCSCCHHHHHHHTTCHHHHHHHHH--TTCC----SCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCC
T ss_pred             cCCCccCCCHHHHHHHcCCHHHHHHHHH--CCCC----CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCC
Confidence            4567777888888888888888887777  5543    577777777777777777777666554  12           


Q ss_pred             chHHhHHHhhhHhHHHHhccc-hhhhhhccCCCCccccccc
Q 021201           69 SALQMQRELLWFQAVKKVVPR-KLAEAKNKKGLTPRALFSE  108 (316)
Q Consensus        69 aal~~~~el~w~~~v~~lv~~-~~~~~~N~~G~Tp~~l~~~  108 (316)
                      .+++.....+..+.++.++.. ...+. +.+|.||++++..
T Consensus       127 t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~g~t~L~~A~~  166 (285)
T 3d9h_A          127 TPLFNACVSGSWDCVNLLLQHGASVQP-ESDLASPIHEAAR  166 (285)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSSC-SCTTSCHHHHHHH
T ss_pred             CHHHHHHHcCHHHHHHHHHHCCCCCCC-CCCCCCHHHHHHH
Confidence            234443333444444444432 22222 3346677666544

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.14  E-value=1.8e-11  Score=110.82  Aligned_cols=81  Identities=15%  Similarity=0.147  Sum_probs=42.2

Q ss_pred             ccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhHh
Q 021201            2 WKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQ   81 (316)
Q Consensus         2 ~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~~   81 (316)
                      +.+|.+|+||||+|+++|+.+++++|++  .+++    ++.+|.+|.||||.|+..++.++++                 
T Consensus        80 n~~d~~G~TpLh~A~~~g~~~~v~~Ll~--~~a~----~~~~~~~g~t~l~~a~~~~~~~~~~-----------------  136 (269)
T 4b93_B           80 NVTSQDGSSPLHVAALHGRADLIPLLLK--HGAN----AGARNADQAVPLHLACQQGHFQVVK-----------------  136 (269)
T ss_dssp             TCCCTTSCCHHHHHHHTTCTTHHHHHHH--TTCC----TTCCCTTCCCHHHHHHHHTCHHHHH-----------------
T ss_pred             CCcCCCCCCHHHHHHHcCcHHHHHHHHh--cCCC----cCccCCCCCCccccccccChHHHHH-----------------
Confidence            3445555555555555555555555555  4332    3455555555555555555544333                 


Q ss_pred             HHHHhcc-chhhhhhccCCCCccccccc
Q 021201           82 AVKKVVP-RKLAEAKNKKGLTPRALFSE  108 (316)
Q Consensus        82 ~v~~lv~-~~~~~~~N~~G~Tp~~l~~~  108 (316)
                         .++. +.+++.+|.+|.||++++..
T Consensus       137 ---~Ll~~g~~~n~~d~~g~TpL~~A~~  161 (269)
T 4b93_B          137 ---CLLDSNAKPNKKDLSGNTPLIYACS  161 (269)
T ss_dssp             ---HHHHTTCCSCCCCTTCCCHHHHHHH
T ss_pred             ---HHHHCCCCCCCCCCCCCCHHHHHHH
Confidence               2221 24455666666666666543

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.14  E-value=1e-11  Score=108.27  Aligned_cols=85  Identities=16%  Similarity=0.103  Sum_probs=65.6

Q ss_pred             cccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhHhH
Q 021201            3 KCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQA   82 (316)
Q Consensus         3 ~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~~~   82 (316)
                      ..|.+|+||||+|+++|+.+++++|++  .+++    +|.+|.+|+||||+|+..++.+.+..+                
T Consensus       116 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~--~ga~----~~~~d~~g~t~L~~A~~~~~~~~~~~i----------------  173 (232)
T 2rfa_A          116 NLIYYGEHPLSFAACVGSEEIVRLLIE--HGAD----IRAQDSLGNTVLHILILQPNKTFACQM----------------  173 (232)
T ss_dssp             CSCCCCSSHHHHHHHHTCHHHHHHHHH--TTCC----TTCCCTTSCCHHHHHHTCSCHHHHHHH----------------
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHH--CCCC----CCCCCCCCCCHHHHHHHcCChHHHHHH----------------
Confidence            345689999999999999999999999  7764    799999999999999999986654111                


Q ss_pred             HHHhcc-chh------hhhhccCCCCccccccch
Q 021201           83 VKKVVP-RKL------AEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        83 v~~lv~-~~~------~~~~N~~G~Tp~~l~~~~  109 (316)
                      ++.++. +..      .+.+|++|+||++++.+.
T Consensus       174 ~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~  207 (232)
T 2rfa_A          174 YNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVE  207 (232)
T ss_dssp             HHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHH
T ss_pred             HHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHc
Confidence            111111 111      268899999999998765

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.14  E-value=8e-12  Score=102.43  Aligned_cols=97  Identities=12%  Similarity=0.088  Sum_probs=73.4

Q ss_pred             CCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cC-----------chHHh
Q 021201            7 NRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SG-----------SALQM   73 (316)
Q Consensus         7 ~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~g-----------aal~~   73 (316)
                      +|.|+||.|+++|+.+++++|++  ...   ..++.+|.+|+||||+ +..|+.++++.+  .|           .+++.
T Consensus         1 r~~~~L~~A~~~g~~~~v~~ll~--~~~---~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~   74 (156)
T 1bd8_A            1 RAGDRLSGAAARGDVQEVRRLLH--REL---VHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHD   74 (156)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHH--TTC---CCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CcchHHHHHHHhCCHHHHHHHHH--hhC---cCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence            46799999999999999999999  521   1268999999999999 888988877655  22           34455


Q ss_pred             HHHhhhHhHHHHhcc-chhhhhhccCCCCccccccch
Q 021201           74 QRELLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        74 ~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                      ....+..+.++.++. +.+++.+|.+|+||++++...
T Consensus        75 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  111 (156)
T 1bd8_A           75 AARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQE  111 (156)
T ss_dssp             HHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHH
T ss_pred             HHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHh
Confidence            555555666666654 457788889999999987654

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.14  E-value=6.6e-12  Score=103.43  Aligned_cols=97  Identities=12%  Similarity=0.191  Sum_probs=75.4

Q ss_pred             CCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cC-----------chHH
Q 021201            6 ENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SG-----------SALQ   72 (316)
Q Consensus         6 ~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~g-----------aal~   72 (316)
                      +...|+||.|+++|+.+++++|++  .+..    +|.+|.+|+||||+|+. ++.++++.+  .|           .+++
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~Ll~--~~~~----~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~   75 (162)
T 1ihb_A            3 EPWGNELASAAARGDLEQLTSLLQ--NNVN----VNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIH   75 (162)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTT--SCCC----TTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             chHhhHHHHHHHcCCHHHHHHHHh--CCCC----ccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence            457899999999999999999999  6653    68999999999999999 888877655  22           3455


Q ss_pred             hHHHhhhHhHHHHhcc-chhhhhhccCCCCccccccch
Q 021201           73 MQRELLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        73 ~~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                      .....+..+.++.++. +.+++.+|.+|+||++++...
T Consensus        76 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  113 (162)
T 1ihb_A           76 DAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKE  113 (162)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            5555555666666664 467888999999999987654

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.14  E-value=1e-11  Score=122.07  Aligned_cols=81  Identities=26%  Similarity=0.396  Sum_probs=68.3

Q ss_pred             ccCCCCcHHhHHHH---CCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhH
Q 021201            4 CDENRYTIFHIAVS---NRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWF   80 (316)
Q Consensus         4 ~D~~G~T~LH~Av~---~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~   80 (316)
                      .|..|+||||+|+.   +|+.+++++|++  .+++    +|.+|.+|+||||+|+..|+.+++++|              
T Consensus       167 ~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~--~ga~----vn~~d~~g~TpLh~A~~~g~~~~v~~L--------------  226 (497)
T 3lvq_E          167 AQAPEELVLHLAVKVANQASLPLVDFIIQ--NGGH----LDAKAADGNTALHYAALYNQPDCLKLL--------------  226 (497)
T ss_dssp             SCCSCBCHHHHHHHTCCTTTHHHHHHHHH--HSCC----TTCCCSSSCCHHHHHTTTTCHHHHHHH--------------
T ss_pred             cccccchHHHHHHHhcccccHHHHHHHHH--cCCC----CCccCCCCCcHHHHHHHcCCHHHHHHH--------------
Confidence            37889999999977   999999999999  7764    799999999999999999997766554              


Q ss_pred             hHHHHhccchhhhhhccCCCCccccccch
Q 021201           81 QAVKKVVPRKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        81 ~~v~~lv~~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                        ++   .+++++.+|++|+||++++...
T Consensus       227 --l~---~ga~~~~~d~~g~tpl~~A~~~  250 (497)
T 3lvq_E          227 --LK---GRALVGTVNEAGETALDIARKK  250 (497)
T ss_dssp             --HH---TCCCCSCCCTTCCCHHHHHHHT
T ss_pred             --HH---cCCCCCCcCCCCCCHHHHHHHc
Confidence              11   2467888999999999988654

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.13  E-value=1.2e-11  Score=118.22  Aligned_cols=102  Identities=17%  Similarity=0.168  Sum_probs=78.4

Q ss_pred             ccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cC-----------
Q 021201            2 WKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SG-----------   68 (316)
Q Consensus         2 ~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~g-----------   68 (316)
                      +..|..|+||||+|+++|+.+++++|++  .+..    +|.+|..|+||||+|+..|+.++++.|  .|           
T Consensus       272 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~--~g~~----~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~  345 (437)
T 1n11_A          272 NLGNKSGLTPLHLVAQEGHVPVADVLIK--HGVM----VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGY  345 (437)
T ss_dssp             TCCCTTCCCHHHHHHHHTCHHHHHHHHH--HTCC----TTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSC
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHh--CCcc----CCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCC
Confidence            4568889999999999999999999998  7653    688999999999999999998877765  22           


Q ss_pred             chHHhHHHhhhHhHHHHhcc-chhhhhhccCCCCccccccch
Q 021201           69 SALQMQRELLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        69 aal~~~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                      .+++.....+..+.|+.++. +++++.+|.+|+||++++.+.
T Consensus       346 t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~  387 (437)
T 1n11_A          346 SPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRL  387 (437)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHT
T ss_pred             CHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHc
Confidence            34455555555565666553 467788888999999887654

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.13  E-value=1.7e-11  Score=110.79  Aligned_cols=82  Identities=24%  Similarity=0.265  Sum_probs=49.9

Q ss_pred             ccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhHh
Q 021201            2 WKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQ   81 (316)
Q Consensus         2 ~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~~   81 (316)
                      +.+|.+|+||||+|+.+|+.+++++|++  .+++    +|.+|.+|+||||+|+..|+.++                   
T Consensus        67 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~--~ga~----~~~~~~~g~tpL~~A~~~g~~~~-------------------  121 (299)
T 1s70_B           67 NYANVDGLTALHQACIDDNVDMVKFLVE--NGAN----INQPDNEGWIPLHAAASCGYLDI-------------------  121 (299)
T ss_dssp             TCBCTTCCBHHHHHHHTTCHHHHHHHHH--TTCC----TTCCCTTSCCHHHHHHHHTCHHH-------------------
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHH--CCCC----CCCCCCCCCcHHHHHHHcCCHHH-------------------
Confidence            3445555666666666666666666655  4432    45555556666666665555443                   


Q ss_pred             HHHHhcc-chhhhhhccCCCCccccccch
Q 021201           82 AVKKVVP-RKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        82 ~v~~lv~-~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                       ++.++. +.+++.+|.+|.||++++...
T Consensus       122 -v~~Ll~~g~~~~~~~~~g~t~l~~A~~~  149 (299)
T 1s70_B          122 -AEYLISQGAHVGAVNSEGDTPLDIAEEE  149 (299)
T ss_dssp             -HHHHHHTTCCTTCCCTTSCCHHHHCCSH
T ss_pred             -HHHHHhCCCCCCCcCCCCCCHHHHHHhc
Confidence             333332 456788899999999988654

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.13  E-value=3.6e-11  Score=100.20  Aligned_cols=96  Identities=10%  Similarity=0.061  Sum_probs=68.0

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cC----------
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SG----------   68 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~g----------   68 (316)
                      ++.+|..|+||||+|+.+|+.+++++|++  .+..    +|.+|.+|+||||+|+..++.++++.|  .|          
T Consensus        62 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g  135 (172)
T 3v30_A           62 PHILAKERESALSLASTGGYTDIVGLLLE--RDVD----INIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSG  135 (172)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHT--TTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             chhhcccCCCHHHHHHHCCCHHHHHHHHH--cCCC----CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCC
Confidence            35678899999999999999999999999  7654    689999999999999999998887765  23          


Q ss_pred             -chHHhHHHhhhHhHHHHhcc-chhhhhhccCCCCc
Q 021201           69 -SALQMQRELLWFQAVKKVVP-RKLAEAKNKKGLTP  102 (316)
Q Consensus        69 -aal~~~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp  102 (316)
                       .+++.....++.+.++.++. ......+|..|.||
T Consensus       136 ~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          136 YTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP  171 (172)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHHHHHSCC-------
T ss_pred             CCHHHHHHHhCcHHHHHHHHHHHHHHhcccCCCCCC
Confidence             34555555555555555543 24566677778777

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.12  E-value=2.6e-11  Score=110.21  Aligned_cols=98  Identities=19%  Similarity=0.112  Sum_probs=77.0

Q ss_pred             cCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cC----------chHH
Q 021201            5 DENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SG----------SALQ   72 (316)
Q Consensus         5 D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~g----------aal~   72 (316)
                      +.+|+||||+|+++|+.+++++|++  .+.+    +|.+|.+|+||||+|+..++.++++.|  .|          .+++
T Consensus       154 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~----~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~g~t~L~  227 (285)
T 3d9h_A          154 ESDLASPIHEAARRGHVECVNSLIA--YGGN----IDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLH  227 (285)
T ss_dssp             SCTTSCHHHHHHHHTCHHHHHHHHH--TTCC----TTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTBCHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHH--CCCC----CCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCHHH
Confidence            5569999999999999999999998  6653    688999999999999999988877665  22          3445


Q ss_pred             hHHHhhhHhHHHHhcc-chhhhhhccCCCCccccccc
Q 021201           73 MQRELLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSE  108 (316)
Q Consensus        73 ~~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~  108 (316)
                      .....+..+.++.++. +.+++.+|++|+||++++..
T Consensus       228 ~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~  264 (285)
T 3d9h_A          228 AVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPP  264 (285)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCT
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhcC
Confidence            5555555566666653 57789999999999999884

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.11  E-value=3.5e-11  Score=104.10  Aligned_cols=99  Identities=15%  Similarity=0.137  Sum_probs=70.7

Q ss_pred             ccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cC------------c
Q 021201            4 CDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SG------------S   69 (316)
Q Consensus         4 ~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~g------------a   69 (316)
                      .|.+|+||||+|+++|+.+++++|++  .+..    ++.+|.+|+||||+|+..++.++++.+  .+            .
T Consensus        21 ~d~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t   94 (223)
T 2f8y_A           21 TDRTGETALHLAARYSRSDAAKRLLE--ASAD----ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTT   94 (223)
T ss_dssp             CTTTCCCHHHHHHHTTCHHHHHHHHH--TTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCC
T ss_pred             cCCCCCchHHHHHHcCCHHHHHHHHH--cCCC----CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCc
Confidence            48899999999999999999999999  6653    689999999999999999998776554  11            2


Q ss_pred             hHHhHHHhhhHhHHHHhcc-chhhhhhccCCCCccccccc
Q 021201           70 ALQMQRELLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSE  108 (316)
Q Consensus        70 al~~~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~  108 (316)
                      +++.....+..+.++.++. +.+++.+|.+|.||++.+..
T Consensus        95 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~  134 (223)
T 2f8y_A           95 PLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAA  134 (223)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHH
T ss_pred             HHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHH
Confidence            3333333333444444442 24556666666677666543

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.11  E-value=3.2e-11  Score=109.71  Aligned_cols=101  Identities=12%  Similarity=0.024  Sum_probs=56.1

Q ss_pred             ccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCC-ChHHHHHhhhCCCCccccc--cC----------
Q 021201            2 WKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEG-NNILHLAGKLAPPDRLNVV--SG----------   68 (316)
Q Consensus         2 ~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~G-nTpLHlAa~~~~~~~v~~L--~g----------   68 (316)
                      +.+|..|+||||+|+.+|+.+++++|++  .+++    ++.+|.+| +||||+|+..|+.++++.|  .|          
T Consensus        89 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~--~ga~----~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~  162 (285)
T 3kea_A           89 SQFDDKGNTALYYAVDSGNMQTVKLFVK--KNWR----LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILL  162 (285)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHH--HCGG----GGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHH
T ss_pred             CCcCCCCCcHHHHHHHcCCHHHHHHHHh--cCCC----CCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCc
Confidence            3456666666666666666666666666  5443    45666666 5666666666666555444  11          


Q ss_pred             chHHhHHHhhhHhHHHHhcc-chhhhhhccCCCCc-cccccc
Q 021201           69 SALQMQRELLWFQAVKKVVP-RKLAEAKNKKGLTP-RALFSE  108 (316)
Q Consensus        69 aal~~~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp-~~l~~~  108 (316)
                      .+++.....+..+.++.++. +.+++.+|.+|+|| ++++..
T Consensus       163 t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~  204 (285)
T 3kea_A          163 SCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAID  204 (285)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHH
T ss_pred             cHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHH
Confidence            22333333333444444442 34566666666665 666544

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.11  E-value=1.7e-11  Score=104.41  Aligned_cols=104  Identities=15%  Similarity=0.120  Sum_probs=73.9

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cC----------
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SG----------   68 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~g----------   68 (316)
                      ++.+|..|+||||+|+.+|+.+++++|++  .+..   .++.+|.+|+||||+|+..++.++++.|  .|          
T Consensus        65 ~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~--~~~~---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~  139 (201)
T 3hra_A           65 INLQNSISDSPYLYAGAQGRTEILAYMLK--HATP---DLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDF  139 (201)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHH--HSCC---CTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTT
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHh--ccCc---ccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCC
Confidence            35678889999999999999999999996  3321   2688999999999999999988887765  22          


Q ss_pred             --chHHhHHHhhh-----HhHHHHhcc-chhhhhhccCCCCccccccch
Q 021201           69 --SALQMQRELLW-----FQAVKKVVP-RKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        69 --aal~~~~el~w-----~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                        .+++.......     .+.++.++. +.+++.+|.+|+||++++...
T Consensus       140 g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~  188 (201)
T 3hra_A          140 GYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQK  188 (201)
T ss_dssp             SCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHc
Confidence              23333332221     344554443 466788888899998887654

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.10  E-value=2.4e-11  Score=111.53  Aligned_cols=102  Identities=16%  Similarity=0.141  Sum_probs=73.4

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cC----------
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SG----------   68 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~g----------   68 (316)
                      ++.+|.+|+||||+|+++|+.+++++|++  .+.+    +|.+|.+|+||||+|+..|+.++++.|  .|          
T Consensus        51 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~----~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g  124 (351)
T 3utm_A           51 CHASDGRKSTPLHLAAGYNRVRIVQLLLQ--HGAD----VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQ  124 (351)
T ss_dssp             CCCSSTTCCCHHHHHHHTTCHHHHHHHHH--TTCC----TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred             cccCCCCCCCHHHHHHHcCCHHHHHHHHH--cCCC----CCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCC
Confidence            35678999999999999999999999999  7654    689999999999999999998877665  12          


Q ss_pred             -chHHhHHHhhhHhHHHHhcc-chhhhhhccCCCCccccccc
Q 021201           69 -SALQMQRELLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSE  108 (316)
Q Consensus        69 -aal~~~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~  108 (316)
                       .+++.....+..+.++.++. +.+.+.+|.+|.||++++..
T Consensus       125 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~  166 (351)
T 3utm_A          125 FTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPT  166 (351)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSS
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhh
Confidence             23333333344444444443 24455666666666665543

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.10  E-value=2.6e-11  Score=115.23  Aligned_cols=83  Identities=19%  Similarity=0.166  Sum_probs=68.1

Q ss_pred             cccc--CCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhh
Q 021201            2 WKCD--ENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLW   79 (316)
Q Consensus         2 ~~~D--~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w   79 (316)
                      +..|  .+|+||||+|+.+|+.+++++|++  .+++    +|.+|.+|+||||+|+..++.+++++|             
T Consensus       227 n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~--~Gad----vn~~d~~G~TpLh~A~~~g~~~~v~~L-------------  287 (368)
T 3jue_A          227 NWVNGGQDNATPLIQATAANSLLACEFLLQ--NGAN----VNQADSAGRGPLHHATILGHTGLACLF-------------  287 (368)
T ss_dssp             TCCCTTTTCCCHHHHHHHTTCHHHHHHHHH--TTCC----TTCCCTTSCCHHHHHHHHTCHHHHHHH-------------
T ss_pred             CccccccCCCCHHHHHHHCCCHHHHHHHHH--cCCC----CCCCCCCCCCHHHHHHHcCcHHHHHHH-------------
Confidence            4455  789999999999999999999999  7664    789999999999999999987665544             


Q ss_pred             HhHHHHhccchhhhhhccCCCCccccccch
Q 021201           80 FQAVKKVVPRKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        80 ~~~v~~lv~~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                         ++   .+++++.+|.+|+||++++...
T Consensus       288 ---L~---~Gad~~~~d~~G~TpL~~A~~~  311 (368)
T 3jue_A          288 ---LK---RGADLGARDSEGRDPLTIAMET  311 (368)
T ss_dssp             ---HH---TTCCTTCCCTTSCCHHHHHHHT
T ss_pred             ---HH---CcCCCCCcCCCCCCHHHHHHHC
Confidence               11   2457788999999999998754

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.09  E-value=8.3e-12  Score=108.73  Aligned_cols=60  Identities=13%  Similarity=0.145  Sum_probs=51.9

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcch-hhhhhhhcccCCCCCChHHHHHhhhCCCCccccc
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDM-KAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV   66 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~-~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L   66 (316)
                      ++.+|..|+||||+|+.+|+.+++++|++  . +.+    +|.+|.+|+||||+|+..|+.+++++|
T Consensus        99 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--~~g~~----~~~~d~~g~tpL~~A~~~~~~~~v~~L  159 (222)
T 3ehr_A           99 VNGLDKAGSTALYWACHGGHKDIVEMLFT--QPNIE----LNQQNKLGDTALHAAAWKGYADIVQLL  159 (222)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHTT--STTCC----CCCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHc--CCCCC----ccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            35678899999999999999999999998  6 443    689999999999999999998877665

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.09  E-value=1.9e-11  Score=114.21  Aligned_cols=102  Identities=16%  Similarity=0.131  Sum_probs=80.8

Q ss_pred             ccccCCCCcHHhHHHHCC--CHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cC---------
Q 021201            2 WKCDENRYTIFHIAVSNR--QVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SG---------   68 (316)
Q Consensus         2 ~~~D~~G~T~LH~Av~~~--~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~g---------   68 (316)
                      +..|.+|+||||+|+.+|  +.+++++|++  .+++    +|.+|.+|+||||+|+..|+.++++.|  .|         
T Consensus       132 ~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~--~ga~----~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~  205 (364)
T 3ljn_A          132 HVKHCKGQTALHWCVGLGPEYLEMIKILVQ--LGAS----PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLD  205 (364)
T ss_dssp             EEEEESCCCHHHHHHHSCGGGHHHHHHHHH--HTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTT
T ss_pred             ccCCCCCCCHHHHHHHcCCchHHHHHHHHH--cCCC----CcccCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccc
Confidence            457888999999999999  9999999999  7654    689999999999999999988877655  12         


Q ss_pred             -------chHHhHHHhhhHhHHHHhcc-chhhhhhccCCCCccccccch
Q 021201           69 -------SALQMQRELLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        69 -------aal~~~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                             .+++.....++.+.++.++. +.+++.+|.+|+||++++...
T Consensus       206 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~  254 (364)
T 3ljn_A          206 YANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRA  254 (364)
T ss_dssp             CCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHh
Confidence                   34455555556666777664 467899999999999998765

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.09  E-value=5.9e-11  Score=102.85  Aligned_cols=59  Identities=19%  Similarity=0.252  Sum_probs=35.9

Q ss_pred             ccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhccc-CCCCCChHHHHHhhhCCCCccccc
Q 021201            4 CDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDS-TDGEGNNILHLAGKLAPPDRLNVV   66 (316)
Q Consensus         4 ~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~-~D~~GnTpLHlAa~~~~~~~v~~L   66 (316)
                      +|.+|+||||+|+++|+.+++++|++  .+...+  ++. .|.+|+||||+|+..++.++++.+
T Consensus        32 ~~~~g~t~L~~A~~~~~~~~v~~Ll~--~~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~~~~L   91 (228)
T 2dzn_A           32 KDQDGRIPLHWSVSFQAHEITSFLLS--KMENVN--LDDYPDDSGWTPFHIACSVGNLEVVKSL   91 (228)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHH--TCTTCC--GGGCCCTTSCCHHHHHHHHCCHHHHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHh--cccccc--ccccCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            56667777777777777777777776  432111  233 666777777777776665554433

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.09  E-value=3.2e-11  Score=107.03  Aligned_cols=86  Identities=21%  Similarity=0.324  Sum_probs=61.1

Q ss_pred             CCCcHHhHHHHCCCHHHHHHHhhcc-hhhhhhhhcccCCCCCChHHHHHhhh--CCCCccccccCchHHhHHHhhhHhHH
Q 021201            7 NRYTIFHIAVSNRQVELFKFIDADD-MKAIADLLVDSTDGEGNNILHLAGKL--APPDRLNVVSGSALQMQRELLWFQAV   83 (316)
Q Consensus         7 ~G~T~LH~Av~~~~~~iv~~Ll~~~-~~~~~~~lin~~D~~GnTpLHlAa~~--~~~~~v~~L~gaal~~~~el~w~~~v   83 (316)
                      .|+||||+|+++|+.+++++|++.. .++    .+|.+|.+|+||||+|+..  ++.+....+             .+.+
T Consensus       135 ~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga----~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~-------------~~iv  197 (256)
T 2etb_A          135 FGELPLSLAACTKQWDVVTYLLENPHQPA----SLEATDSLGNTVLHALVMIADNSPENSALV-------------IHMY  197 (256)
T ss_dssp             SCSSHHHHHHHTTCHHHHHHHHHCSSCCC----CTTCCCTTSCCHHHHHHHHCCSCHHHHHHH-------------HHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhccccCC----CcCccCCCCCCHHHHHHHcccCCchhhHHH-------------HHHH
Confidence            3999999999999999999999921 122    2689999999999999994  443311000             0112


Q ss_pred             HHhcc-chhh-------hhhccCCCCccccccch
Q 021201           84 KKVVP-RKLA-------EAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        84 ~~lv~-~~~~-------~~~N~~G~Tp~~l~~~~  109 (316)
                      +.++. +.++       +.+|.+|+||++++...
T Consensus       198 ~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~  231 (256)
T 2etb_A          198 DGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKE  231 (256)
T ss_dssp             HHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred             HHHHHcCCCcccccccccccCCCCCCHHHHHHHh
Confidence            22222 2445       88999999999998765

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.08  E-value=3e-11  Score=107.26  Aligned_cols=89  Identities=17%  Similarity=0.196  Sum_probs=63.5

Q ss_pred             CCCCcHHhHHHHCCCHHHHHHHhhcc-hhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhHhHHH
Q 021201            6 ENRYTIFHIAVSNRQVELFKFIDADD-MKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQAVK   84 (316)
Q Consensus         6 ~~G~T~LH~Av~~~~~~iv~~Ll~~~-~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~~~v~   84 (316)
                      ..|+||||+|+.+|+.+++++|++.+ .++    .+|.+|.+|+||||+|+..++...-..           ....+.++
T Consensus       138 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga----~~~~~d~~g~TpLh~A~~~~~~~~~~~-----------~~~~~~v~  202 (260)
T 3jxi_A          138 YFGELPLSLAACTNQPHIVHYLTENGHKQA----DLRRQDSRGNTVLHALVAIADNTRENT-----------KFVTKMYD  202 (260)
T ss_dssp             CSCSSHHHHHHHTTCHHHHHHHHHCSSCCC----CTTCCCTTSCCHHHHHHHHCCSSHHHH-----------HHHHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHhccccCC----CCcccCCCCCcHHHHHHHhccCchhHH-----------HHHHHHHH
Confidence            67999999999999999999999922 222    269999999999999999877321000           00012233


Q ss_pred             Hhcc-chhh-------hhhccCCCCccccccch
Q 021201           85 KVVP-RKLA-------EAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        85 ~lv~-~~~~-------~~~N~~G~Tp~~l~~~~  109 (316)
                      .++. +.++       +.+|.+|+||++++...
T Consensus       203 ~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~  235 (260)
T 3jxi_A          203 LLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKT  235 (260)
T ss_dssp             HHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred             HHHHhCcccccccchhhcccCCCCCHHHHHHHc
Confidence            3332 2334       67999999999998765

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.08  E-value=6e-11  Score=103.58  Aligned_cols=102  Identities=15%  Similarity=0.223  Sum_probs=74.1

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cC----------
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SG----------   68 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~g----------   68 (316)
                      ++.+|.+|+||||+|+++|+.+++++|++  .+..    ++..|.+|+||||+|+..|+.++++.+  .|          
T Consensus         4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g   77 (237)
T 3b7b_A            4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQ--AGAN----IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEG   77 (237)
T ss_dssp             CCCSSCCSCCHHHHHHHHTCHHHHHHHHH--TTCC----TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTS
T ss_pred             cccccCCCCCHHHHHHHcCcHHHHHHHHH--cCCC----cCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCC
Confidence            35678999999999999999999999999  6653    688999999999999999998777655  11          


Q ss_pred             -chHHhHHHhhhHhHHHHhccc--hhhhhhccCCCCccccccc
Q 021201           69 -SALQMQRELLWFQAVKKVVPR--KLAEAKNKKGLTPRALFSE  108 (316)
Q Consensus        69 -aal~~~~el~w~~~v~~lv~~--~~~~~~N~~G~Tp~~l~~~  108 (316)
                       .+++.....+..+.++.++..  ...+.+|.+|.||++.+..
T Consensus        78 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~  120 (237)
T 3b7b_A           78 STCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATE  120 (237)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHH
T ss_pred             CcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHH
Confidence             233343334444555555432  4556666777777766544

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.08  E-value=3.9e-11  Score=99.49  Aligned_cols=96  Identities=17%  Similarity=0.116  Sum_probs=68.4

Q ss_pred             CCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cC-----------chHHh
Q 021201            7 NRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SG-----------SALQM   73 (316)
Q Consensus         7 ~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~g-----------aal~~   73 (316)
                      .|+||||.|+++|+.+++++|++  .+..    +|.+|.+|+||||+|+..++.++++.+  .|           .+++.
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~--~~~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~   75 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIE--QENV----INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSL   75 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHH--HSSC----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHH--cCCC----cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHH
Confidence            68999999999999999999999  6643    689999999999999999998776654  11           23333


Q ss_pred             HHHhhhHhHHHHhcc-chhhhhhccCCCCccccccc
Q 021201           74 QRELLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSE  108 (316)
Q Consensus        74 ~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~  108 (316)
                      ....+..+.++.++. +.+++.+|.+|.||++++..
T Consensus        76 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  111 (167)
T 3v31_A           76 ACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVH  111 (167)
T ss_dssp             HHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHH
Confidence            333333444444443 24556666666666666543

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.07  E-value=2.8e-11  Score=109.64  Aligned_cols=103  Identities=17%  Similarity=0.142  Sum_probs=72.4

Q ss_pred             ccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhh-----CCCCccccc----------
Q 021201            2 WKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKL-----APPDRLNVV----------   66 (316)
Q Consensus         2 ~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~-----~~~~~v~~L----------   66 (316)
                      +.+|.+|+||||+|+.+|+.+++++|++  .+..   .+|.+|.+|.||||+|+..     ++.++++.+          
T Consensus       105 n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~--~g~~---~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~  179 (276)
T 4hbd_A          105 NIADSNGNTALHYSVSHANFPVVQQLLD--SGVC---KVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKA  179 (276)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHH--TSCC---CTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCC
T ss_pred             cCCCCCCCCHHHHHHHCCCHHHHHHHHH--CCCC---cCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCcccc
Confidence            5679999999999999999999999999  6641   2688999999999999953     222222221          


Q ss_pred             ---cCchHHhHHHhhhHhHHHHhcc-chhhhhhccCCCCccccccch
Q 021201           67 ---SGSALQMQRELLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        67 ---~gaal~~~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                         ...+++.....+..+.++.++. +.+++.+|.+|+||++++...
T Consensus       180 ~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~  226 (276)
T 4hbd_A          180 SQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEH  226 (276)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHC
Confidence               1144555555555555665553 456777777788887776543

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.07  E-value=5.7e-11  Score=109.49  Aligned_cols=78  Identities=17%  Similarity=0.132  Sum_probs=61.0

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhH
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWF   80 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~   80 (316)
                      ++.+|.+|+||||+|+.+|+.+++++|++  .+++    +|.+|.+|+||||+|+..++.+++++|              
T Consensus       219 vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~--~gad----~~~~d~~G~TpL~~A~~~~~~~iv~~L--------------  278 (301)
T 2b0o_E          219 LDAKAADGNTALHYAALYNQPDCLKLLLK--GRAL----VGTVNEAGETALDIARKKHHKECEELL--------------  278 (301)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHH--TTCC----CSCCCTTSCCHHHHHHHHTCHHHHHHH--------------
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHH--cCCC----CCCcCCCCCCHHHHHHHcCCHHHHHHH--------------
Confidence            46789999999999999999999999999  7764    799999999999999999997665544              


Q ss_pred             hHHHHhccchhhhhhccCCCCccccccch
Q 021201           81 QAVKKVVPRKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        81 ~~v~~lv~~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                                 .+.....|.||++++.+.
T Consensus       279 -----------l~~ga~~g~tpLh~A~~~  296 (301)
T 2b0o_E          279 -----------EQAQAGTFAFPLHVDYSW  296 (301)
T ss_dssp             -----------HHHHHHTTSSCCC-----
T ss_pred             -----------HHhcCCCCCChhHHHHhc
Confidence                       112223689999998754

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.07  E-value=5.9e-11  Score=92.43  Aligned_cols=59  Identities=22%  Similarity=0.240  Sum_probs=52.0

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCcccc
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNV   65 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~   65 (316)
                      ++.+|..|+||||+|+.+|+.+++++|++  .+++    +|.+|.+|+||||+|+..++.+++++
T Consensus        50 i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~--~ga~----~~~~d~~g~tpl~~A~~~~~~~~~~~  108 (110)
T 2zgd_A           50 VAAKDKNGSTPLHLAARNGHLEVVKLLLE--AGAD----VXAQDKFGKTAFDISIDNGNEDLAEI  108 (110)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHH--TTCC----TTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHHH--cCCC----ccccccCCCcHHHHHHHcCCHHHHHH
Confidence            46688999999999999999999999999  7654    68999999999999999998765543

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.06  E-value=3.4e-11  Score=94.31  Aligned_cols=60  Identities=27%  Similarity=0.354  Sum_probs=52.9

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV   66 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L   66 (316)
                      ++.+|..|+||||+|+.+++.+++++|++  .+..    ++.+|.+|+||||+|+..++.++++.+
T Consensus        28 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~--~g~~----~~~~~~~g~t~l~~A~~~~~~~~~~~L   87 (126)
T 1n0r_A           28 VNAKDKNGRTPLHLAARNGHLEVVKLLLE--AGAD----VNAKDKNGRTPLHLAARNGHLEVVKLL   87 (126)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHHHH--TTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCcCCCCCcHHHHHHHcCcHHHHHHHHH--cCCC----CcccCCCCCcHHHHHHHcChHHHHHHH
Confidence            35678999999999999999999999999  6653    689999999999999999998777655

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.06  E-value=1.4e-11  Score=99.29  Aligned_cols=81  Identities=21%  Similarity=0.104  Sum_probs=65.6

Q ss_pred             ccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhHhHH
Q 021201            4 CDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQAV   83 (316)
Q Consensus         4 ~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~~~v   83 (316)
                      .+..|+|+||+|+++|+.+++++|++  .+.+    +|.+|.+|+||||+|+..++.++++.|                +
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~--~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~L----------------l   67 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMA--NGAD----VNAKDEYGLTPLYLATAHGHLEIVEVL----------------L   67 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHH--TTCC----TTCCCTTSCCHHHHHHHHTCHHHHHHH----------------H
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHH--cCCC----CCCcCCCCCCHHHHHHHcCCHHHHHHH----------------H
Confidence            35568999999999999999999999  6653    689999999999999999986655443                1


Q ss_pred             HHhccchhhhhhccCCCCccccccch
Q 021201           84 KKVVPRKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        84 ~~lv~~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                      +   .+.+++.+|.+|.||++++...
T Consensus        68 ~---~g~~~~~~d~~g~t~L~~A~~~   90 (136)
T 2jab_A           68 K---NGADVNAVDAIGFTPLHLAAFI   90 (136)
T ss_dssp             H---TTCCTTCCCTTCCCHHHHHHHH
T ss_pred             H---cCCCCCcCCCCCCCHHHHHHHc
Confidence            1   2356788999999999988754

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.05  E-value=3.7e-11  Score=113.40  Aligned_cols=82  Identities=18%  Similarity=0.206  Sum_probs=68.7

Q ss_pred             cccCCCCcHHhHHHHCCCHHHHHHHhhcchh-hhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhHh
Q 021201            3 KCDENRYTIFHIAVSNRQVELFKFIDADDMK-AIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQ   81 (316)
Q Consensus         3 ~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~-~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~~   81 (316)
                      .+|..|+||||+|+++|+.+++++|++  .+ .    .+|.+|.+|+||||+|+..|+.+++++|               
T Consensus       274 ~~d~~g~t~Lh~A~~~g~~~~v~~Ll~--~~~~----~~n~~d~~g~TpL~~A~~~g~~~iv~~L---------------  332 (373)
T 2fo1_E          274 SEKYKGRTALHYAAQVSNMPIVKYLVG--EKGS----NKDKQDEDGKTPIMLAAQEGRIEVVMYL---------------  332 (373)
T ss_dssp             SSSCCCCCTHHHHHSSCCHHHHHHHHH--HSCC----CTTCCCTTCCCHHHHHHHHTCHHHHHHH---------------
T ss_pred             cccccCCCHHHHHHHhCCHHHHHHHHH--hcCC----CccCcCCCCCCHHHHHHHcCCHHHHHHH---------------
Confidence            367799999999999999999999998  54 3    3799999999999999999997766554               


Q ss_pred             HHHHhccchhhhhhccCCCCccccccch
Q 021201           82 AVKKVVPRKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        82 ~v~~lv~~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                       ++   .+.+++.+|.+|+||++++...
T Consensus       333 -l~---~gad~~~~d~~g~t~l~~A~~~  356 (373)
T 2fo1_E          333 -IQ---QGASVEAVDATDHTARQLAQAN  356 (373)
T ss_dssp             -HH---TTCCSSCCCSSSCCHHHHHHHT
T ss_pred             -HH---cCCCccCCCCCCCCHHHHHHHc
Confidence             11   2457788999999999998765

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.02  E-value=7.6e-11  Score=112.69  Aligned_cols=101  Identities=15%  Similarity=0.128  Sum_probs=62.9

Q ss_pred             ccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cC-----------
Q 021201            2 WKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SG-----------   68 (316)
Q Consensus         2 ~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~g-----------   68 (316)
                      +..|++|+||||+|+.+|+.+++++|++  .+..    +|..|.+|+||||+|+..|+.++++.|  .|           
T Consensus         8 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~--~g~~----~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~   81 (437)
T 1n11_A            8 GGGGESGLTPLHVASFMGHLPIVKNLLQ--RGAS----PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ   81 (437)
T ss_dssp             -------CCHHHHHHHHTCHHHHHHHHH--TTCC----SCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSC
T ss_pred             cccCCCCCCHHHHHHHCCCHHHHHHHHH--cCCC----CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC
Confidence            4567778888888888888888888887  5543    577777888888888888877766654  12           


Q ss_pred             chHHhHHHhhhHhHHHHhcc-chhhhhhccCCCCccccccc
Q 021201           69 SALQMQRELLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSE  108 (316)
Q Consensus        69 aal~~~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~  108 (316)
                      .+++.....+..+.++.++. +.+++.+|.+|.||++++..
T Consensus        82 t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~  122 (437)
T 1n11_A           82 TPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAR  122 (437)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHH
T ss_pred             CHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHH
Confidence            34444444455555555553 34566677777777776644

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.00  E-value=1.2e-10  Score=104.51  Aligned_cols=89  Identities=24%  Similarity=0.267  Sum_probs=62.3

Q ss_pred             CCCCcHHhHHHHCCCHHHHHHHhhcc-hhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhHhHHH
Q 021201            6 ENRYTIFHIAVSNRQVELFKFIDADD-MKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQAVK   84 (316)
Q Consensus         6 ~~G~T~LH~Av~~~~~~iv~~Ll~~~-~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~~~v~   84 (316)
                      ..|+||||+|+++|+.+++++|++.+ .+.    .+|.+|.+|+||||+|+..++...-..      ..     ..+.++
T Consensus       146 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga----d~~~~d~~g~tpLh~A~~~~~~~~~~~------~~-----~~~~v~  210 (273)
T 2pnn_A          146 YFGELPLSLAACTNQLAIVKFLLQNSWQPA----DISARDSVGNTVLHALVEVADNTVDNT------KF-----VTSMYN  210 (273)
T ss_dssp             CSCBSHHHHHHHTTCHHHHHHHHHCSSCCC----CTTCCCTTSCCHHHHHHHHCCSCHHHH------HH-----HHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHhcccCCC----CceeeCCCCCcHHHHHHHccCcchhHH------HH-----HHHHHH
Confidence            47999999999999999999999922 222    268999999999999999887421100      00     011122


Q ss_pred             Hhcc-chhh-------hhhccCCCCccccccch
Q 021201           85 KVVP-RKLA-------EAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        85 ~lv~-~~~~-------~~~N~~G~Tp~~l~~~~  109 (316)
                      .++. +.++       +.+|.+|+||++++.+.
T Consensus       211 ~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~  243 (273)
T 2pnn_A          211 EILILGAKLHPTLKLEEITNRKGLTPLALAASS  243 (273)
T ss_dssp             HHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred             HHHHhhhhcccccccccccCCCCCCHHHHHHHh
Confidence            2222 2333       45899999999998765

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=98.99  E-value=2.1e-10  Score=102.01  Aligned_cols=99  Identities=19%  Similarity=0.146  Sum_probs=72.8

Q ss_pred             cCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cC-----------chH
Q 021201            5 DENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SG-----------SAL   71 (316)
Q Consensus         5 D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~g-----------aal   71 (316)
                      |..|+||||+|+++|+.+++++|++  .+..    ++.+|.+|+||||+|+..|+.++++.+  .|           .++
T Consensus        36 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L  109 (285)
T 1wdy_A           36 EEGGWTPLHNAVQMSREDIVELLLR--HGAD----PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAF  109 (285)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHH--TTCC----TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHH--cCCC----CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHH
Confidence            6779999999999999999999999  6653    688999999999999999998877665  22           344


Q ss_pred             HhHHHhhhHhHHHHhccc-hhhhhh----------ccCCCCccccccch
Q 021201           72 QMQRELLWFQAVKKVVPR-KLAEAK----------NKKGLTPRALFSEQ  109 (316)
Q Consensus        72 ~~~~el~w~~~v~~lv~~-~~~~~~----------N~~G~Tp~~l~~~~  109 (316)
                      +.....+..+.++.++.. ...+.+          +.+|.||++.+...
T Consensus       110 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~  158 (285)
T 1wdy_A          110 MEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK  158 (285)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHc
Confidence            444444455555555432 233333          78899999887654

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=98.99  E-value=1.3e-10  Score=103.25  Aligned_cols=101  Identities=20%  Similarity=0.164  Sum_probs=75.1

Q ss_pred             cccCCCCcHHhHHHHCCCHHHHHHHhhcch-hhhhhhhcccCCCCCChHHHHHhhhCCC----Cccccc--cC-------
Q 021201            3 KCDENRYTIFHIAVSNRQVELFKFIDADDM-KAIADLLVDSTDGEGNNILHLAGKLAPP----DRLNVV--SG-------   68 (316)
Q Consensus         3 ~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~-~~~~~~lin~~D~~GnTpLHlAa~~~~~----~~v~~L--~g-------   68 (316)
                      ..|..|+||||+|+++|+.+++++|++  . +..    +|.+|.+|+||||+|+..++.    ++++.+  .|       
T Consensus       143 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~--~~~~~----~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~  216 (285)
T 1wdy_A          143 RLRKGGATALMDAAEKGHVEVLKILLD--EMGAD----VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRG  216 (285)
T ss_dssp             HTTCCCCCHHHHHHHHTCHHHHHHHHH--TSCCC----TTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCC
T ss_pred             hhccCCCcHHHHHHHcCCHHHHHHHHH--hcCCC----CCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcC
Confidence            357889999999999999999999998  5 443    688999999999999998883    333333  11       


Q ss_pred             ----chHHhHHHhhhHhHHHHhcc--chhhhhhccCCCCccccccch
Q 021201           69 ----SALQMQRELLWFQAVKKVVP--RKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        69 ----aal~~~~el~w~~~v~~lv~--~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                          .+++...+.+..+.++.++.  +.+++.+|.+|+||++++.+.
T Consensus       217 ~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~  263 (285)
T 1wdy_A          217 ERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVEL  263 (285)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHc
Confidence                34555555555666666664  467888899999999987654

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=98.98  E-value=6.7e-11  Score=104.59  Aligned_cols=80  Identities=15%  Similarity=0.062  Sum_probs=63.8

Q ss_pred             cCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhHhHHH
Q 021201            5 DENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQAVK   84 (316)
Q Consensus         5 D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~~~v~   84 (316)
                      +..|.|+||.|+.+|+.+++++|++  .+.+    +|.+|.+|+||||+|+..|+.++++.|                ++
T Consensus        34 ~~~~~t~L~~A~~~g~~~~v~~Ll~--~g~~----~~~~d~~g~t~L~~A~~~g~~~~v~~L----------------l~   91 (239)
T 1ycs_B           34 NPLPLALLLDSSLEGEFDLVQRIIY--EVDD----PSLPNDEGITALHNAVCAGHTEIVKFL----------------VQ   91 (239)
T ss_dssp             ---CHHHHHHHHHHTCHHHHHHHTS--TTSS----CCCCCTTSCCHHHHHHHHTCHHHHHHH----------------HH
T ss_pred             CchhhHHHHHHHHcCCHHHHHHHHH--cCCC----CCCcCCCCCCHHHHHHHcCCHHHHHHH----------------HH
Confidence            4568999999999999999999999  6653    689999999999999999987665544                11


Q ss_pred             HhccchhhhhhccCCCCccccccch
Q 021201           85 KVVPRKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        85 ~lv~~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                         .+.+++.+|.+|.||++++...
T Consensus        92 ---~ga~~~~~d~~g~tpL~~A~~~  113 (239)
T 1ycs_B           92 ---FGVNVNAADSDGWTPLHCAASC  113 (239)
T ss_dssp             ---HTCCTTCCCTTCCCHHHHHHHT
T ss_pred             ---cCCCCCccCCCCCCHHHHHHHc
Confidence               1456788999999999998654

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=98.97  E-value=1.7e-10  Score=92.62  Aligned_cols=60  Identities=22%  Similarity=0.249  Sum_probs=54.0

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV   66 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L   66 (316)
                      ++.+|..|+||||+|+++|+.+++++|++  .+.+    ++.+|.+|+||||+|+..++.++++.|
T Consensus        36 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~--~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~L   95 (137)
T 3c5r_A           36 PNVKDHAGWTPLHEACNHGHLKVVELLLQ--HKAL----VNTTGYQNDSPLHDAAKNGHVDIVKLL   95 (137)
T ss_dssp             SCCCCTTSCCHHHHHHHTTCHHHHHHHHH--TTCC----TTCCCGGGCCHHHHHHHTTCHHHHHHH
T ss_pred             CCcCCCCCCCHHHHHHHcCCHHHHHHHHH--cCCc----ccCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence            35678999999999999999999999999  7654    689999999999999999998887766

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=98.97  E-value=8.8e-11  Score=103.72  Aligned_cols=60  Identities=22%  Similarity=0.190  Sum_probs=53.6

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV   66 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L   66 (316)
                      ++.+|.+|+||||+|+.+|+.+++++|++  .+++    +|.+|.+|+||||+|+..|+.+++++|
T Consensus        47 ~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~--~ga~----~n~~d~~g~tpLh~A~~~g~~~~v~~L  106 (229)
T 2vge_A           47 PSQPNEEGITALHNAICGANYSIVDFLIT--AGAN----VNSPDSHGWTPLHCAASCNDTVICMAL  106 (229)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHH--TTCC----TTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHH--CCCC----CCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            45678999999999999999999999999  7654    789999999999999999998887766

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=98.97  E-value=5.3e-10  Score=96.91  Aligned_cols=101  Identities=18%  Similarity=0.132  Sum_probs=55.5

Q ss_pred             cccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCC-CCccccc--cC-----------
Q 021201            3 KCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAP-PDRLNVV--SG-----------   68 (316)
Q Consensus         3 ~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~-~~~v~~L--~g-----------   68 (316)
                      .+|..|+||||+|+.+|+.+++++|++  .+..    ++.+|.+|+||||+|+..++ .+.++++  .|           
T Consensus       104 ~~~~~g~t~l~~A~~~~~~~~~~~Ll~--~~~~----~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g  177 (240)
T 3eu9_A          104 LIDGEGCSCIHLAAQFGHTSIVAYLIA--KGQD----VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHK  177 (240)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHH--TTCC----TTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTC
T ss_pred             ccCCCCCCHHHHHHHcCHHHHHHHHHh--cCCC----ccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCC
Confidence            345566666666666666666666666  4432    45666666677776665554 3333322  11           


Q ss_pred             -chHHhHHHhhhHhHHHHhcc-chhhhhhccCCCCccccccch
Q 021201           69 -SALQMQRELLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        69 -aal~~~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                       .+++.....+..+.++.++. +.+++.+|.+|+||++++.+.
T Consensus       178 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~  220 (240)
T 3eu9_A          178 NTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQR  220 (240)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHT
T ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence             23444433344444444443 345566666777777766543

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=98.95  E-value=2.8e-10  Score=103.59  Aligned_cols=60  Identities=18%  Similarity=0.204  Sum_probs=53.7

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV   66 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L   66 (316)
                      ++.+|.+|+||||+|+.+|+.+++++|++  .+++    +|.+|.+|+||||+|+..|+.+++++|
T Consensus       198 in~~d~~g~TpLh~A~~~g~~~~v~~Ll~--~gad----~~~~d~~g~tpL~~A~~~~~~~~v~~L  257 (278)
T 1dcq_A          198 LDKQTGKGSTALHYCCLTDNAECLKLLLR--GKAS----IEIANESGETPLDIAKRLKHEHCEELL  257 (278)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHH--TTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHH--cCCC----CCCccCCCCCHHHHHHHcCCHHHHHHH
Confidence            46789999999999999999999999999  7764    799999999999999999997766554

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=98.95  E-value=1.3e-10  Score=109.54  Aligned_cols=83  Identities=16%  Similarity=0.123  Sum_probs=69.3

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhH
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWF   80 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~   80 (316)
                      ++.+|.+|+||||+|+.+|+.+++++|++  .+++    ++.+|.+|.||||+|+..|+.++++.|              
T Consensus       159 vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~--~ga~----~~~~~~~g~t~L~~A~~~g~~~~v~~L--------------  218 (373)
T 2fo1_E          159 VNAMDCDENTPLMLAVLARRRRLVAYLMK--AGAD----PTIYNKSERSALHQAAANRDFGMMVYM--------------  218 (373)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHHHH--TTCC----SCCCCTTCCCHHHHHHHTTCHHHHHHH--------------
T ss_pred             CcCCCCCCCCHHHHHHHcChHHHHHHHHH--CCCC----CcccCCCCCCHHHHHHHCCCHHHHHHH--------------
Confidence            46789999999999999999999999999  7764    689999999999999999986665443              


Q ss_pred             hHHHHhccc----hhhhhhccCCCCccccccch
Q 021201           81 QAVKKVVPR----KLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        81 ~~v~~lv~~----~~~~~~N~~G~Tp~~l~~~~  109 (316)
                            +..    .+++.+|.+|.||++++...
T Consensus       219 ------l~~~~~~~~~~~~d~~g~t~L~~A~~~  245 (373)
T 2fo1_E          219 ------LNSTKLKGDIEELDRNGMTALMIVAHN  245 (373)
T ss_dssp             ------TTSHHHHHTTSCCCTTSCCHHHHHHHS
T ss_pred             ------HhcCccccChhhcCCCCCCHHHHHHHh
Confidence                  221    46778899999999987654

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=98.94  E-value=2.6e-10  Score=91.69  Aligned_cols=59  Identities=12%  Similarity=0.002  Sum_probs=47.9

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCC-CChHHHHHhhhCCCCccccc
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGE-GNNILHLAGKLAPPDRLNVV   66 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~-GnTpLHlAa~~~~~~~v~~L   66 (316)
                      ++.+|..|+||||+|+. ++.+++++|++  .+.+    +|.+|.+ |+||||+|+..++.++++.|
T Consensus        38 ~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~--~g~~----~~~~~~~~g~t~L~~A~~~~~~~~v~~L   97 (136)
T 1d9s_A           38 PNALNRFGRRPIQVMMM-GSAQVAELLLL--HGAE----PNCADPATLTRPVHDAAREGFLDTLVVL   97 (136)
T ss_dssp             TTCCCTTCCTTTTTSTT-SCHHHHHHHHH--HTCC----SSCCBTTTTBCHHHHHHHHTCHHHHHHH
T ss_pred             cCCcCCCCCCHHHHHHc-CCHHHHHHHHH--CCCC----CCCcCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            35678888889999888 88888888888  6653    6888888 88899988888888777665

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=98.94  E-value=5.2e-10  Score=103.28  Aligned_cols=61  Identities=18%  Similarity=0.081  Sum_probs=38.3

Q ss_pred             ccccC-CCCcHHhHHHHCCCHHHHHHHhhcchhhhh-----------------------------hhhcccCCCCCChHH
Q 021201            2 WKCDE-NRYTIFHIAVSNRQVELFKFIDADDMKAIA-----------------------------DLLVDSTDGEGNNIL   51 (316)
Q Consensus         2 ~~~D~-~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~-----------------------------~~lin~~D~~GnTpL   51 (316)
                      +.+|. .|+||||+|+++|+.+++++|++  +++..                             ...+|.+|.+|.|||
T Consensus        52 n~~~~~~g~TpLh~A~~~g~~~iv~~Ll~--~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l  129 (337)
T 4g8k_A           52 NFQEEEGGWTPLHNAVQMSREDIVELLLR--HGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAF  129 (337)
T ss_dssp             TCCCTTTCCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHH
T ss_pred             CccCCCCCcCHHHHHHHcCCHHHHHHHHH--cCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHH
Confidence            34444 37788888888888888888877  33210                             012456677777777


Q ss_pred             HHHhhhCCCCccc
Q 021201           52 HLAGKLAPPDRLN   64 (316)
Q Consensus        52 HlAa~~~~~~~v~   64 (316)
                      |+|+..++.+.++
T Consensus       130 ~~A~~~~~~~~~~  142 (337)
T 4g8k_A          130 MEAAVYGKVKALK  142 (337)
T ss_dssp             HHHHHTTCHHHHH
T ss_pred             HHHHHcCcHHHHH
Confidence            7777776655543

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=98.93  E-value=2.5e-10  Score=95.14  Aligned_cols=98  Identities=19%  Similarity=0.187  Sum_probs=68.0

Q ss_pred             cCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cC-----------chH
Q 021201            5 DENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SG-----------SAL   71 (316)
Q Consensus         5 D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~g-----------aal   71 (316)
                      ...+.++||.|+++|+.+++++|++  .+.+    +|.+|.+|+||||+|+..++.++++.+  .|           .++
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~--~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L   84 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMA--NGAD----VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPL   84 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHH--TTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHH--CCCC----CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHH
Confidence            4567899999999999999999999  7653    689999999999999999998776654  12           233


Q ss_pred             HhHHHhhhHhHHHHhcc-chhhhhhccCCCCccccccc
Q 021201           72 QMQRELLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSE  108 (316)
Q Consensus        72 ~~~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~  108 (316)
                      +.....+..+.++.++. +.+++.+|.+|.||++++..
T Consensus        85 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~  122 (169)
T 2y1l_E           85 RLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAM  122 (169)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            33333333444444442 34556666666666666543

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=98.92  E-value=2.4e-10  Score=106.66  Aligned_cols=70  Identities=16%  Similarity=0.109  Sum_probs=52.1

Q ss_pred             cccCCCCCChHHHHHhhhC--CCCccccc--cC-----------chHHhHHHhhhHhHHHHhcc-chh-----hhhhccC
Q 021201           40 VDSTDGEGNNILHLAGKLA--PPDRLNVV--SG-----------SALQMQRELLWFQAVKKVVP-RKL-----AEAKNKK   98 (316)
Q Consensus        40 in~~D~~GnTpLHlAa~~~--~~~~v~~L--~g-----------aal~~~~el~w~~~v~~lv~-~~~-----~~~~N~~   98 (316)
                      .+.+|.+|.||||+|+..|  +.++++.|  .|           .+++.....+..+.++.++. ..+     ++.+|.+
T Consensus       131 ~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~  210 (364)
T 3ljn_A          131 SHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQ  210 (364)
T ss_dssp             TEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTT
T ss_pred             cccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCC
Confidence            5789999999999999999  87877765  22           34555555556666766653 233     7889999


Q ss_pred             CCCccccccch
Q 021201           99 GLTPRALFSEQ  109 (316)
Q Consensus        99 G~Tp~~l~~~~  109 (316)
                      |.||++++...
T Consensus       211 g~t~L~~A~~~  221 (364)
T 3ljn_A          211 GNSHLHWAILI  221 (364)
T ss_dssp             CCCTTHHHHTT
T ss_pred             CCcHHHHHHHc
Confidence            99999987654

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=98.91  E-value=5.5e-10  Score=92.31  Aligned_cols=60  Identities=18%  Similarity=0.109  Sum_probs=54.2

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV   66 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L   66 (316)
                      ++.+|.+|+||||+|+.+|+.+++++|++  .+.+    +|.+|.+|+||||+|+..++.++++.|
T Consensus        68 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~L  127 (165)
T 3twr_A           68 VHAKDKGGLVPLHNACSYGHYEVAELLVK--HGAV----VNVADLWKFTPLHEAAAKGKYEICKLL  127 (165)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHH--TTCC----TTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             CCccCCCCCCHHHHHHHcCcHHHHHHHHh--CCCC----CCCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence            45688999999999999999999999999  7654    689999999999999999998888766

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=98.91  E-value=4.7e-10  Score=106.56  Aligned_cols=87  Identities=17%  Similarity=0.099  Sum_probs=54.4

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhH
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWF   80 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~   80 (316)
                      ++.+|.+|+||||+|+.+|+.+++++|++  .+++    +|.+|.+|+||||+|+..++.+++++|.             
T Consensus       261 vn~~d~~G~TpLh~A~~~g~~~~v~~LL~--~Gad----~~~~d~~G~TpL~~A~~~g~~~iv~lLl-------------  321 (368)
T 3jue_A          261 VNQADSAGRGPLHHATILGHTGLACLFLK--RGAD----LGARDSEGRDPLTIAMETANADIVTLLR-------------  321 (368)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHHHH--TTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHHH-------------
T ss_pred             CCCCCCCCCCHHHHHHHcCcHHHHHHHHH--CcCC----CCCcCCCCCCHHHHHHHCCCHHHHHHHH-------------
Confidence            46789999999999999999999999999  7764    6899999999999999999987766551             


Q ss_pred             hHHHHhccchhhhhhccCCCCccccccch
Q 021201           81 QAVKKVVPRKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        81 ~~v~~lv~~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                         +...........+.++.|+++++...
T Consensus       322 ---~~~~~~~~~~~~~~~~~t~l~i~~~~  347 (368)
T 3jue_A          322 ---LAKMREAEAAQGQAGDETYLDIFRDF  347 (368)
T ss_dssp             ---HHHC----------------------
T ss_pred             ---HcCCCcccccccCCCCCCHHHHHHHH
Confidence               10111223345667788999887654

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=98.91  E-value=2.3e-10  Score=105.68  Aligned_cols=97  Identities=16%  Similarity=0.087  Sum_probs=71.0

Q ss_pred             CCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCC-CCChHHHHHhhhCCCCccccc--cCchHH-----------
Q 021201            7 NRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDG-EGNNILHLAGKLAPPDRLNVV--SGSALQ-----------   72 (316)
Q Consensus         7 ~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~-~GnTpLHlAa~~~~~~~v~~L--~gaal~-----------   72 (316)
                      +|.|+||.||++|+.++|++|++  .+++    +|.+|. .|.||||+|+..|+.+++++|  .|+..+           
T Consensus        24 ~~~t~L~~Av~~g~~~~V~~LL~--~Gad----vn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~   97 (337)
T 4g8k_A           24 EDNHLLIKAVQNEDVDLVQQLLE--GGAN----VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFI   97 (337)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHH--HTCC----TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHH--CCCC----CCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhH
Confidence            47899999999999999999999  7764    688876 599999999999999988876  343221           


Q ss_pred             hHHHhhhHhHHHHhc-cchhhhhhccCCCCccccccch
Q 021201           73 MQRELLWFQAVKKVV-PRKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        73 ~~~el~w~~~v~~lv-~~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                      ..........++.+. ...+++.+|.+|.||++.+...
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~  135 (337)
T 4g8k_A           98 LAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY  135 (337)
T ss_dssp             HHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHT
T ss_pred             HHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHc
Confidence            111112222222222 3456788999999999987654

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=98.88  E-value=1.1e-10  Score=103.84  Aligned_cols=80  Identities=14%  Similarity=0.157  Sum_probs=64.8

Q ss_pred             ccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhHhHH
Q 021201            4 CDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQAV   83 (316)
Q Consensus         4 ~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~~~v   83 (316)
                      .|.+|+||||+|+++|+.+++++|++  ..     .+|.+|.+|+||||+|+..|+.+++++|                +
T Consensus        41 ~~~~g~t~L~~A~~~g~~~~v~~Ll~--~~-----~~~~~d~~g~t~L~~A~~~g~~~~v~~L----------------l   97 (244)
T 3ui2_A           41 VVSEYETPWWTAARKADEQALSQLLE--DR-----DVDAVDENGRTALLFVAGLGSDKCVRLL----------------A   97 (244)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHTTT--TC-----CTTCBCTTSCBHHHHHHHHTCHHHHHHH----------------H
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHc--CC-----CCCCcCCCCCCHHHHHHHCCCHHHHHHH----------------H
Confidence            35679999999999999999999998  22     2689999999999999999997765544                1


Q ss_pred             HHhccchhhhhhc-cCCCCccccccch
Q 021201           84 KKVVPRKLAEAKN-KKGLTPRALFSEQ  109 (316)
Q Consensus        84 ~~lv~~~~~~~~N-~~G~Tp~~l~~~~  109 (316)
                      +   .+.+++.+| .+|.||++++...
T Consensus        98 ~---~ga~~~~~~~~~g~t~L~~A~~~  121 (244)
T 3ui2_A           98 E---AGADLDHRDMRGGLTALHMAAGY  121 (244)
T ss_dssp             H---TTCCTTCCCSSSCCCHHHHHHHT
T ss_pred             H---cCCCCCcCCCCCCCCHHHHHHHc
Confidence            1   245677777 7899999988754

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=98.88  E-value=7.4e-10  Score=96.03  Aligned_cols=103  Identities=16%  Similarity=0.036  Sum_probs=76.2

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cC----------
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SG----------   68 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~g----------   68 (316)
                      ++..|+.|.|+||.|+++|+.+++++|++  .+..    ++.+|.+|+||||+|+..|+.++++.+  .|          
T Consensus         2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~--~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~   75 (240)
T 3eu9_A            2 MTHIDDYSTWDIVKATQYGIYERCRELVE--AGYD----VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDL   75 (240)
T ss_dssp             CCCCSCGGGCCHHHHHHTTCHHHHHHHHH--TTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTT
T ss_pred             ccccccccchHHHHHHHcCChHHHHHHHH--cCCC----cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCc
Confidence            35678899999999999999999999999  6643    688999999999999999988777655  11          


Q ss_pred             --chHHhHHHhhhHhHHHHhcc-chhhhhhccCCCCccccccch
Q 021201           69 --SALQMQRELLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        69 --aal~~~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                        .+++.....+..+.++.++. +.+.+.+|.+|.||++.+...
T Consensus        76 ~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~  119 (240)
T 3eu9_A           76 NSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQF  119 (240)
T ss_dssp             TBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence              23444444445555655553 356677788888888876554

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=98.87  E-value=9.9e-10  Score=92.22  Aligned_cols=60  Identities=18%  Similarity=0.181  Sum_probs=54.0

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV   66 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L   66 (316)
                      ++.+|.+|+||||+|+.+|+.+++++|++  .+.+    +|.+|.+|+||||+|+..++.++++.|
T Consensus        65 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~----~~~~d~~g~t~L~~A~~~~~~~~v~~L  124 (179)
T 3f6q_A           65 INVMNRGDDTPLHLAASHGHRDIVQKLLQ--YKAD----INAVNEHGNVPLHYACFWGQDQVAEDL  124 (179)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHH--TTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCcCCCCCCHHHHHHHcCCHHHHHHHHH--cCCC----CCccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            35678999999999999999999999999  7654    789999999999999999998887766

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=98.82  E-value=4.4e-09  Score=88.84  Aligned_cols=56  Identities=20%  Similarity=0.211  Sum_probs=49.0

Q ss_pred             cccc-CCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCcc
Q 021201            2 WKCD-ENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRL   63 (316)
Q Consensus         2 ~~~D-~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v   63 (316)
                      +.+| .+|+||||+|+.+|+.+++++|++  .+++    +|.+|.+|+||||+|+..++.+..
T Consensus       103 ~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~--~ga~----~~~~d~~g~tpl~~A~~~~~~~~~  159 (183)
T 3deo_A          103 DHRDMRGGLTALHMAAGYVRPEVVEALVE--LGAD----IEVEDERGLTALELAREILKTTPK  159 (183)
T ss_dssp             TCCCSSSSCCHHHHHHHTTCHHHHHHHHH--HTCC----TTCCCTTSCCHHHHHHHHHHTCCC
T ss_pred             CcCCCCCCCCHHHHHHhcCcHHHHHHHHH--cCCC----CcCCCCCCCCHHHHHHHhccCccc
Confidence            4566 789999999999999999999999  7764    689999999999999998776544

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=98.81  E-value=1.1e-09  Score=107.47  Aligned_cols=60  Identities=18%  Similarity=0.209  Sum_probs=55.2

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV   66 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L   66 (316)
                      ++.+|.+|+||||+|+.+|+.+++++|++  .+++    +|.+|.+|+||||+|+..|+.+++++|
T Consensus       200 vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~--~ga~----~~~~d~~g~tpl~~A~~~~~~~~~~~L  259 (497)
T 3lvq_E          200 LDAKAADGNTALHYAALYNQPDCLKLLLK--GRAL----VGTVNEAGETALDIARKKHHKECEELL  259 (497)
T ss_dssp             TTCCCSSSCCHHHHHTTTTCHHHHHHHHH--TCCC----CSCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHH--cCCC----CCCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence            56789999999999999999999999999  7764    799999999999999999998887776

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=98.65  E-value=9.3e-10  Score=104.76  Aligned_cols=103  Identities=10%  Similarity=0.061  Sum_probs=72.3

Q ss_pred             ccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cCc------------
Q 021201            4 CDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SGS------------   69 (316)
Q Consensus         4 ~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~ga------------   69 (316)
                      .+.+++||||+|+++|+.+++++|++  .+.... ..+..|.+|+||||+|+..|+.++++.|  .|+            
T Consensus        88 ~g~~~~T~Lh~Aa~~G~~e~v~~Ll~--~ga~~~-~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~~  164 (376)
T 2aja_A           88 KGIKSEVICFVAAITGCSSALDTLCL--LLTSDE-IVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENY  164 (376)
T ss_dssp             HTCCHHHHHHHHHHHCCHHHHHHHTT--C--CCS-SCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHH
T ss_pred             cCCCcCCHHHHHHHcCCHHHHHHHHH--cCCcHH-HHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCCC
Confidence            45677899999999999999999998  554211 1234566788999999999999988877  453            


Q ss_pred             -hHHhHHHhhhHhHHHHhcc-chhhhh--hccCCCCcccccc-ch
Q 021201           70 -ALQMQRELLWFQAVKKVVP-RKLAEA--KNKKGLTPRALFS-EQ  109 (316)
Q Consensus        70 -al~~~~el~w~~~v~~lv~-~~~~~~--~N~~G~Tp~~l~~-~~  109 (316)
                       +++....-++.+.|+.++. +.+++.  +|.+|.||++++. ..
T Consensus       165 TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~  209 (376)
T 2aja_A          165 HAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGR  209 (376)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHC
Confidence             2333344445666776664 355555  8888999999887 54

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=98.56  E-value=1.6e-08  Score=86.49  Aligned_cols=53  Identities=11%  Similarity=-0.036  Sum_probs=46.7

Q ss_pred             CccccCCCCcHHhHHHHCCC------HHHHHHHhhcchhhhhhhhcccCCCCCC-hHHHHHhhhCC
Q 021201            1 MWKCDENRYTIFHIAVSNRQ------VELFKFIDADDMKAIADLLVDSTDGEGN-NILHLAGKLAP   59 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~------~~iv~~Ll~~~~~~~~~~lin~~D~~Gn-TpLHlAa~~~~   59 (316)
                      ++.+|.+|+||||+|+.+++      .+++++|++  .+++    +|.+|.+|+ ||||+|+..+.
T Consensus        68 vn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~--~Gad----in~~d~~g~ttpLh~A~~~~~  127 (186)
T 3t8k_A           68 IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLE--KGAD----ITALYKPYKIVVFKNIFNYFV  127 (186)
T ss_dssp             SSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHH--TTCC----SSSCBGGGTBCTTGGGGGCCS
T ss_pred             CCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHH--CCCC----CCccCCCcCchHHHHHHHcCC
Confidence            56789999999999999987      578999999  7765    799999999 99999999554

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=98.19  E-value=5.6e-08  Score=92.40  Aligned_cols=59  Identities=14%  Similarity=0.247  Sum_probs=36.9

Q ss_pred             cccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhh-hhcccCCCCCChHHHHHhhhCCCCccccc
Q 021201            3 KCDENRYTIFHIAVSNRQVELFKFIDADDMKAIAD-LLVDSTDGEGNNILHLAGKLAPPDRLNVV   66 (316)
Q Consensus         3 ~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~-~lin~~D~~GnTpLHlAa~~~~~~~v~~L   66 (316)
                      ..|.+|+||||+|+++|+.+++++|++  .+++.. ..++..|   +||||+|+..|+.++++.|
T Consensus       123 ~~~~~~~tpL~~Aa~~G~~eiv~~Ll~--~gad~~~~~i~~~~---~TpLh~Aa~~G~~eiv~~L  182 (376)
T 2aja_A          123 VIQAENYQAFRLAAENGHLHVLNRLCE--LAPTEIMAMIQAEN---YHAFRLAAENGHLHVLNRL  182 (376)
T ss_dssp             --CHHHHHHHHHHHHTTCHHHHHHHHH--SCTTTHHHHHSHHH---HHHHHHHHHTTCHHHHHHH
T ss_pred             HhccCCCCHHHHHHHcCCHHHHHHHHh--CCCCccccccCCCC---CCHHHHHHHCCCHHHHHHH
Confidence            345567778888888888888888877  543110 0122222   7777777777777777665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	316
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	0.001

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 5/53 (9%)

Query: 3  KCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADL-LVDSTDGEGNNILHLA 54
             E+  T  H+AV ++      F+    +   A    +D  +  G   LHLA
Sbjct: 4  YVTEDGDTALHLAVIHQHEPFLDFL----LGFSAGHEYLDLQNDLGQTALHLA 52

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	316
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.52
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.38
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.34
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.34
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.31
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.27
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.22
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.21
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.21
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.2
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.16
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.16
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.15
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.14
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.13
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.1
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.09
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.07
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.04
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.04
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.04
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.04
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.03
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.02
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	98.99
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	98.99
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	98.98
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	98.93
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	98.92
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	98.91
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	98.9
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	98.9
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	98.82
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	98.82
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	98.78
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	98.78
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	98.36
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	98.27

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=1.8e-15  Score=118.67  Aligned_cols=82  Identities=17%  Similarity=0.107  Sum_probs=61.2

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhH
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWF   80 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~   80 (316)
                      ++.+|.+|+||||+|+.+|+.++++++++  .+.+    +|.+|.+|+||||+|+..++.++++.|              
T Consensus        28 ~n~~~~~g~t~lh~A~~~~~~~~~~~ll~--~g~d----in~~d~~g~tpLh~A~~~~~~~~v~~L--------------   87 (118)
T d1myoa_          28 VNRTLEGGRKPLHYAADCGQLEILEFLLL--KGAD----INAPDKHHITPLLSAVYEGHVSCVKLL--------------   87 (118)
T ss_dssp             CCCCSSSSCCTTHHHHHHSTTTHHHHHHH--SSCT----TTCCSSSCSCHHHHHHTTTCCHHHHHH--------------
T ss_pred             ccccccccccccccccccccccccccccc--ccce----eeecccccccchhhhhhcCchhhhhhh--------------
Confidence            35667778888888888888888888877  5543    577788888888888887776654433              


Q ss_pred             hHHHHhc-cchhhhhhccCCCCccccccc
Q 021201           81 QAVKKVV-PRKLAEAKNKKGLTPRALFSE  108 (316)
Q Consensus        81 ~~v~~lv-~~~~~~~~N~~G~Tp~~l~~~  108 (316)
                            + .+.+++.+|++|+||++++..
T Consensus        88 ------l~~Gad~~~~d~~G~t~l~~a~~  110 (118)
T d1myoa_          88 ------LSKGADKTVKGPDGLTALEATDN  110 (118)
T ss_dssp             ------HTTCCCSSSSSSSTCCCCCTCSS
T ss_pred             ------hcccccceeeCCCCCCHHHHHhH
Confidence                  3 246788999999999998854

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=6.8e-14  Score=115.09  Aligned_cols=81  Identities=21%  Similarity=0.332  Sum_probs=67.1

Q ss_pred             ccCCCCcHHhHHHHC---CCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhH
Q 021201            4 CDENRYTIFHIAVSN---RQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWF   80 (316)
Q Consensus         4 ~D~~G~T~LH~Av~~---~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~   80 (316)
                      .|..|+||||+|++.   ++.+++++|++  .+++    +|.+|.+|+||||+|+..|+.++++.|              
T Consensus        41 ~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~--~gad----in~~d~~g~TpLh~A~~~~~~~~v~~L--------------  100 (154)
T d1dcqa1          41 GHEPDETALHLAVRSVDRTSLHIVDFLVQ--NSGN----LDKQTGKGSTALHYCCLTDNAECLKLL--------------  100 (154)
T ss_dssp             CSSTTCBHHHHHHHHCCTTTHHHHHHHHH--HCSC----TTCCCTTCCCHHHHHHHTTCHHHHHHH--------------
T ss_pred             CCCCCCchHHHHHHhcCCCCHHHHHHHHH--cCCC----hhhhhhhhccccccccccccccccccc--------------
Confidence            477899999999974   67899999999  7764    799999999999999999987665544              


Q ss_pred             hHHHHhccchhhhhhccCCCCccccccch
Q 021201           81 QAVKKVVPRKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        81 ~~v~~lv~~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                        ++   .+.+++.+|++|+||++++.+.
T Consensus       101 --l~---~gad~~~~d~~g~tpL~~A~~~  124 (154)
T d1dcqa1         101 --LR---GKASIEIANESGETPLDIAKRL  124 (154)
T ss_dssp             --HH---TTCCTTCCCTTSCCHHHHHHHT
T ss_pred             --cc---cCccccccCCCCCCHHHHHHHc
Confidence              11   2467789999999999998764

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.3e-13  Score=109.71  Aligned_cols=83  Identities=20%  Similarity=0.169  Sum_probs=65.1

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhH
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWF   80 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~   80 (316)
                      ++.+|++|+||||+|+.+++.+++++|++  .+.+    +|.+|.+|+||||+|+..|+.++++.|              
T Consensus        27 ~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~--~g~~----~~~~d~~g~tpLh~A~~~g~~~~v~~L--------------   86 (130)
T d1ycsb1          27 PSLPNDEGITALHNAVCAGHTEIVKFLVQ--FGVN----VNAADSDGWTPLHCAASCNNVQVCKFL--------------   86 (130)
T ss_dssp             CCCCCTTSCCHHHHHHHHTCHHHHHHHHH--HTCC----TTCCCTTCCCHHHHHHHTTCHHHHHHH--------------
T ss_pred             ccccccccccccccccccccccccccccc--cccc----cccccccCcccccccchhhHHHHHHHH--------------
Confidence            46789999999999999999999999999  7654    689999999999999999987665544              


Q ss_pred             hHHHHhccchhhhhhc-cCCCCccccccc
Q 021201           81 QAVKKVVPRKLAEAKN-KKGLTPRALFSE  108 (316)
Q Consensus        81 ~~v~~lv~~~~~~~~N-~~G~Tp~~l~~~  108 (316)
                        ++   .+++++.+| ++|+||.+++..
T Consensus        87 --l~---~ga~v~~~~~~~~~~~~~~~~a  110 (130)
T d1ycsb1          87 --VE---SGAAVFAMTYSDMQTAADKCEE  110 (130)
T ss_dssp             --HH---TTCCTTCCCSSSCCCHHHHCCS
T ss_pred             --HH---cCCCcccccCCCCCCHHHHHHH
Confidence              11   234556555 468898877643

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=1.6e-13  Score=119.36  Aligned_cols=85  Identities=20%  Similarity=0.241  Sum_probs=69.6

Q ss_pred             cccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhHhH
Q 021201            3 KCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQA   82 (316)
Q Consensus         3 ~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~~~   82 (316)
                      -+|++|+||||+|+++|+.+++++|++  .++.... +|.+|++|+||||+|+..|+.++++.|                
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll~--~~a~~~~-i~~~~~~g~TpL~~A~~~g~~~iv~~L----------------   64 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPFLDFLLG--FSAGHEY-LDLQNDLGQTALHLAAILGEASTVEKL----------------   64 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHH--HHTTSGG-GGCCCTTSCCHHHHHHHHTCHHHHHHH----------------
T ss_pred             cCCcCCCCHHHHHHHcCCHHHHHHHHH--cCCCccc-ccCcCCCCCCccchHHhhccccccccc----------------
Confidence            468999999999999999999999999  7654332 589999999999999999987665443                


Q ss_pred             HHHhccchhhhhhccCCCCccccccch
Q 021201           83 VKKVVPRKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        83 v~~lv~~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                      ++   .+++++.+|++|+||++++...
T Consensus        65 l~---~ga~i~~~d~~g~tpL~~A~~~   88 (255)
T d1oy3d_          65 YA---AGAGVLVAERGGHTALHLACRV   88 (255)
T ss_dssp             HH---TTCCSSCCCTTSCCHHHHHTTT
T ss_pred             cc---ccccccccccccchhhhhhhcc
Confidence            11   2456788999999999987654

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=5.4e-13  Score=114.85  Aligned_cols=110  Identities=16%  Similarity=0.127  Sum_probs=84.2

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--c-----------
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--S-----------   67 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~-----------   67 (316)
                      ++.+|.+|+||||+|+++|+.+++++|++  .+.+    ++.+|.+|.||||+|+..++.+..+.+  .           
T Consensus        96 ~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~--~g~d----~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g  169 (223)
T d1uoha_          96 VNAVNQNGCTPLHYAASKNRHEIAVMLLE--GGAN----PDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEG  169 (223)
T ss_dssp             TTCCCTTCCCHHHHHHHHTCHHHHHHHHH--TTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTC
T ss_pred             eEeeCCCCCchhhHHHHcCCHHHHHHHHH--CCCC----CCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCC
Confidence            35678999999999999999999999999  6653    688899999999999998887665544  1           


Q ss_pred             CchHHhHHHhhhHhHHHHhcc-chhhhhhccCCCCccccccchhhhhhhh
Q 021201           68 GSALQMQRELLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSEQHRDLKEK  116 (316)
Q Consensus        68 gaal~~~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~~~~~l~~~  116 (316)
                      ..+++.....+..+.|+.++. +++++.+|++|+||++++...|.+.+++
T Consensus       170 ~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A~~~~~~i~~~  219 (223)
T d1uoha_         170 NTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGGLGLILKR  219 (223)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHCCTTHHHHHHH
T ss_pred             CceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCHHHHhc
Confidence            135555555555666766653 5678899999999999987666665543

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.27  E-value=9e-13  Score=116.71  Aligned_cols=89  Identities=22%  Similarity=0.211  Sum_probs=73.6

Q ss_pred             cccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhHhH
Q 021201            3 KCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQA   82 (316)
Q Consensus         3 ~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~~~   82 (316)
                      ..+..|.||||+|+.+|+.+++++|++  .+.+    +|.+|.+|+||||+|+..|+.+++++|                
T Consensus       194 ~~~~~g~t~L~~a~~~~~~~~~~~Ll~--~g~d----in~~~~~g~TpL~~A~~~g~~~iv~lL----------------  251 (291)
T d1s70b_         194 RHAKSGGTALHVAAAKGYTEVLKLLIQ--ARYD----VNIKDYDGWTPLHAAAHWGKEEACRIL----------------  251 (291)
T ss_dssp             CCTTTCCCHHHHHHHHTCHHHHHHHHT--TTCC----TTCCCTTCCCHHHHHHHTTCHHHHHHH----------------
T ss_pred             cccCCCCChhhHHHHcCChhhhccccc--ceec----ccccccCCCCHHHHHHHcCCHHHHHHH----------------
Confidence            457889999999999999999999999  7764    689999999999999999997766554                


Q ss_pred             HHHhccchhhhhhccCCCCccccccchhhhhhhh
Q 021201           83 VKKVVPRKLAEAKNKKGLTPRALFSEQHRDLKEK  116 (316)
Q Consensus        83 v~~lv~~~~~~~~N~~G~Tp~~l~~~~~~~l~~~  116 (316)
                      ++   .+++++.+|++|+||++++.+...+++++
T Consensus       252 l~---~Gadv~~~d~~G~TaL~~A~e~~~~~L~~  282 (291)
T d1s70b_         252 VE---NLCDMEAVNKVGQTAFDVADEDILGYLEE  282 (291)
T ss_dssp             HH---TTCCTTCCCTTSCCTTTSCCSGGGHHHHH
T ss_pred             HH---CCCCCCCcCCCCCCHHHHHHHHHHHHHHH
Confidence            11   24578899999999999998755454444

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.22  E-value=2.2e-12  Score=110.08  Aligned_cols=85  Identities=18%  Similarity=0.105  Sum_probs=68.3

Q ss_pred             ccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhHh
Q 021201            2 WKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQ   81 (316)
Q Consensus         2 ~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~~   81 (316)
                      +..|.+|+||||+|+.+|+.+++++|++  .+..   .+|.+|.+|+||||+|+..++.++++.|               
T Consensus       132 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~--~~~~---~in~~d~~g~TpLh~A~~~~~~~~v~~L---------------  191 (229)
T d1ixva_         132 RIKDKFNQIPLHRAASVGSLKLIELLCG--LGKS---AVNWQDKQGWTPLFHALAEGHGDAAVLL---------------  191 (229)
T ss_dssp             CCCCTTSCCHHHHHHHHTCHHHHHHHHT--TTCC---CSCCCCTTSCCHHHHHHHTTCHHHHHHH---------------
T ss_pred             cccCCCCCCccchhhhcccccccccccc--cccc---cccccccccCCchhhhcccccHHHHHHH---------------
Confidence            4568899999999999999999999998  5421   3689999999999999999986655433               


Q ss_pred             HHHHhccchhhhhhccCCCCccccccch
Q 021201           82 AVKKVVPRKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        82 ~v~~lv~~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                       +++  .+.+++.+|++|+||++++.+.
T Consensus       192 -l~~--~gad~~~~d~~g~t~l~~A~~~  216 (229)
T d1ixva_         192 -VEK--YGAEYDLVDNKGAKAEDVALNE  216 (229)
T ss_dssp             -HHH--HCCCSCCCCTTSCCTGGGCSCH
T ss_pred             -HHh--cCCCCCCcCCCCCCHHHHHhhH
Confidence             111  1467899999999999998753

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.21  E-value=1.9e-12  Score=112.38  Aligned_cols=85  Identities=21%  Similarity=0.204  Sum_probs=68.7

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhH
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWF   80 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~   80 (316)
                      ++.+|.+|+||||+|+++++.+++++|++  .+..   ..+.+|..|+||||+|++.++.+++++|              
T Consensus       151 in~~d~~g~TpLh~A~~~~~~~~v~~Ll~--~~~~---~~~~~~~~g~TpL~~A~~~~~~~~v~~L--------------  211 (255)
T d1oy3d_         151 LEAENYDGHTPLHVAVIHKDAEMVRLLRD--AGAD---LNKPEPTCGRTPLHLAVEAQAASVLELL--------------  211 (255)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHH--HTCC---TTCCCTTTCCCHHHHHHHTTCHHHHHHH--------------
T ss_pred             cccccccCcccccccccccccccccchhc--cccc---ccccccccccccccccccccHHHHHHHH--------------
Confidence            35689999999999999999999999999  6653   2345788999999999999987665543              


Q ss_pred             hHHHHhccchhhhhhccCCCCccccccch
Q 021201           81 QAVKKVVPRKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        81 ~~v~~lv~~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                        ++   .+.+++.+|++|+||++++...
T Consensus       212 --l~---~gadin~~d~~g~t~L~~A~~~  235 (255)
T d1oy3d_         212 --LK---AGADPTARMYGGRTPLGSALLR  235 (255)
T ss_dssp             --HH---TTCCTTCCCTTSCCHHHHHHTS
T ss_pred             --HH---CCCCCCCCCCCCCCHHHHHHHC
Confidence              11   2457889999999999997654

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.21  E-value=1.1e-11  Score=111.56  Aligned_cols=50  Identities=26%  Similarity=0.137  Sum_probs=45.6

Q ss_pred             ccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCC
Q 021201            4 CDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAP   59 (316)
Q Consensus         4 ~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~   59 (316)
                      .|++|+||||+|+.+|+.+++++|++  .+++    ++.+|.+|+||||+|+..++
T Consensus       103 ~D~~G~T~LH~Aa~~g~~~~v~~Ll~--~gad----~~~~d~~G~TpL~~A~~~~~  152 (301)
T d1sw6a_         103 VDEHGNTPLHWLTSIANLELVKHLVK--HGSN----RLYGDNMGESCLVKAVKSVN  152 (301)
T ss_dssp             CSTTCCCHHHHHHHTTCHHHHHHHHH--TTCC----TTBCCTTCCCHHHHHHHSSH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHH--CCCC----CCcCCcccccHHHHhhhccc
Confidence            38999999999999999999999999  7764    78999999999999998664

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.20  E-value=8.3e-13  Score=115.60  Aligned_cols=87  Identities=18%  Similarity=0.059  Sum_probs=65.8

Q ss_pred             cccc-CCCCcHHhHHHHCCCHHHHHHHhhcchhhhh----hhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHH
Q 021201            2 WKCD-ENRYTIFHIAVSNRQVELFKFIDADDMKAIA----DLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRE   76 (316)
Q Consensus         2 ~~~D-~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~----~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~e   76 (316)
                      +..| ++|+||||+|+++|+.+++++|+.  .....    ...+|.+|.+|+||||+|+..|+.++++.|          
T Consensus        26 n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~--~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~L----------   93 (277)
T d2fo1e1          26 NIIDPRHNRTVLHWIASNSSAEKSEDLIV--HEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYL----------   93 (277)
T ss_dssp             TTCCCSSCCCHHHHHHCTTCCSCCTTHHH--HHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHH----------
T ss_pred             CcCCCCCCccHHHHHHHcCCHHHHHHHHh--cchhHHHHcCCCccccCCCCCeeeccccccccccccccc----------
Confidence            3445 459999999999999999999976  43211    113799999999999999999997766544          


Q ss_pred             hhhHhHHHHhccchhhhhhccCCCCccccccch
Q 021201           77 LLWFQAVKKVVPRKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        77 l~w~~~v~~lv~~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                            ++   .+++++.+|++|+||++.+...
T Consensus        94 ------l~---~Gad~n~~~~~g~t~l~~a~~~  117 (277)
T d2fo1e1          94 ------MK---AGADPTIYNKSERSALHQAAAN  117 (277)
T ss_dssp             ------HH---TTCCSCCCCTTCCCHHHHHHHT
T ss_pred             ------cc---cccccccccccccccccchhhh
Confidence                  11   2356778889999998876543

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=5.2e-12  Score=108.49  Aligned_cols=106  Identities=17%  Similarity=0.215  Sum_probs=69.3

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhh-----------------------------hhhhcccCCCCCChHH
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAI-----------------------------ADLLVDSTDGEGNNIL   51 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~-----------------------------~~~lin~~D~~GnTpL   51 (316)
                      ++.+|.+|+||||+|+.+|+.++++++++.  +..                             ....+|.+|.+|+|||
T Consensus        30 ~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL  107 (223)
T d1uoha_          30 ATRTDQDSRTALHWACSAGHTEIVEFLLQL--GVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPL  107 (223)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHHH--TCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred             CcCcCCCCCCHHHHHHHhhhhccccccccc--ccccccccccccccccccccccccchhHHHhccCceeEeeCCCCCchh
Confidence            357899999999999999999999999872  110                             0112478899999999


Q ss_pred             HHHhhhCCCCccccc--cCc-----------hHHhHHHhhhHhHHHHhc-cchhhhhhccCCCCccccccc
Q 021201           52 HLAGKLAPPDRLNVV--SGS-----------ALQMQRELLWFQAVKKVV-PRKLAEAKNKKGLTPRALFSE  108 (316)
Q Consensus        52 HlAa~~~~~~~v~~L--~ga-----------al~~~~el~w~~~v~~lv-~~~~~~~~N~~G~Tp~~l~~~  108 (316)
                      |+|+..++.+.++.|  .|+           +++........+.++.+. ...+++.+|.+|+||++++..
T Consensus       108 ~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~  178 (223)
T d1uoha_         108 HYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACD  178 (223)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHH
T ss_pred             hHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceeccccc
Confidence            999999887776655  222           233322222222233222 234566677777777776654

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=7.9e-12  Score=106.82  Aligned_cols=58  Identities=22%  Similarity=0.143  Sum_probs=49.1

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccc
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLN   64 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~   64 (316)
                      |+.+|.+|+||||+|+.+|+.+++++|++  .+++    ++.+|.+|.||||.|+..++.++++
T Consensus        32 in~~d~~g~TpLh~A~~~~~~~iv~~L~~--~g~d----~~~~d~~g~t~l~~~~~~~~~~~~~   89 (221)
T d1iknd_          32 LNFQNNLQQTPLHLAVITNQPEIAEALLG--AGCD----PELRDFRGNTPLHLACEQGCLASVG   89 (221)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHCCCS--CCCC----SCCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred             cccCCCCCCcccccccccccccccccccc--cccc----ccccccccccccccccccccccccc
Confidence            46789999999999999999999999999  6654    6888999999999999887665443

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.15  E-value=7.2e-12  Score=102.68  Aligned_cols=60  Identities=18%  Similarity=0.204  Sum_probs=53.9

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV   66 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L   66 (316)
                      ++.+|.+|+||||+|+++|+.+++++|++  .+++    +|.+|.+|.||||+|++.|+.+++++|
T Consensus        74 in~~d~~g~TpLh~A~~~~~~~~v~~Ll~--~gad----~~~~d~~g~tpL~~A~~~~~~~i~~~L  133 (154)
T d1dcqa1          74 LDKQTGKGSTALHYCCLTDNAECLKLLLR--GKAS----IEIANESGETPLDIAKRLKHEHCEELL  133 (154)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHH--TTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             hhhhhhhhccccccccccccccccccccc--cCcc----ccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            46789999999999999999999999999  7764    689999999999999999997776554

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.14  E-value=5.2e-12  Score=98.48  Aligned_cols=76  Identities=21%  Similarity=0.121  Sum_probs=63.7

Q ss_pred             CcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhHhHHHHhcc
Q 021201            9 YTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQAVKKVVP   88 (316)
Q Consensus         9 ~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~~~v~~lv~   88 (316)
                      +|||++|+++|+.+++++|++  .+.+    +|.+|.+|+||||+|+..++.+.++.+                ++   .
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~--~g~d----~n~~~~~g~t~lh~A~~~~~~~~~~~l----------------l~---~   57 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVA--KGED----VNRTLEGGRKPLHYAADCGQLEILEFL----------------LL---K   57 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHT--TTCC----CCCCSSSSCCTTHHHHHHSTTTHHHHH----------------HH---S
T ss_pred             ChHHHHHHHCCCHHHHHHHHH--hhhc----ccccccccccccccccccccccccccc----------------cc---c
Confidence            489999999999999999999  7764    799999999999999999997765443                11   2


Q ss_pred             chhhhhhccCCCCccccccch
Q 021201           89 RKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        89 ~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                      +.+++.+|.+|+||++++...
T Consensus        58 g~din~~d~~g~tpLh~A~~~   78 (118)
T d1myoa_          58 GADINAPDKHHITPLLSAVYE   78 (118)
T ss_dssp             SCTTTCCSSSCSCHHHHHHTT
T ss_pred             cceeeecccccccchhhhhhc
Confidence            456788999999999987654

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.13  E-value=7.9e-12  Score=105.07  Aligned_cols=84  Identities=19%  Similarity=0.192  Sum_probs=70.3

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhH
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWF   80 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~   80 (316)
                      ++.+|..|+|+||+|+.+++.++++.+++  .+..    +|.+|.+|+||||+|+..|+.++++.|              
T Consensus       116 ~~~~~~~~~t~l~~~~~~~~~~~~~~l~~--~~~~----~~~~d~~g~TpL~~A~~~g~~~~v~~L--------------  175 (209)
T d1ot8a_         116 INAADNSGKTALHWAAAVNNTEAVNILLM--HHAN----RDAQDDKDETPLFLAAREGSYEASKAL--------------  175 (209)
T ss_dssp             TTCBCTTSCBHHHHHHHTTCHHHHHHHHH--TTCC----TTCCCTTCCCHHHHHHHTTCHHHHHHH--------------
T ss_pred             ccccCCCCCCcchhhcccCcceeeeeecc--cccc----ccccccccccccchhccccHHHHHHHH--------------
Confidence            35788999999999999999999999999  6653    689999999999999999997765544              


Q ss_pred             hHHHHhccchhhhhhccCCCCccccccch
Q 021201           81 QAVKKVVPRKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        81 ~~v~~lv~~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                        ++   .+.+++.+|.+|+||++++.+.
T Consensus       176 --l~---~gad~n~~d~~g~Tpl~~A~~~  199 (209)
T d1ot8a_         176 --LD---NFANREITDHMDRLPRDVASER  199 (209)
T ss_dssp             --HH---TTCCTTCCCTTSCCHHHHHHHT
T ss_pred             --HH---CCCCCCCcCCCCCCHHHHHHHc
Confidence              11   2356788999999999998765

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.2e-11  Score=102.92  Aligned_cols=81  Identities=21%  Similarity=0.174  Sum_probs=59.7

Q ss_pred             CCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhHhHHHH
Q 021201            6 ENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQAVKK   85 (316)
Q Consensus         6 ~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~~~v~~   85 (316)
                      ++|+||||+|+++|+.++++.|++  ........+|.+|.+|+||||+|+..|+.++++.|                ++ 
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~--~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~L----------------l~-   61 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVN--LFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL----------------VT-   61 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHH--HHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHH----------------HH-
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHH--HHHHCCCCCCccCCCCCccceehhccccccccccc----------------cc-
Confidence            479999999999999999999987  43322234799999999999999999987765543                11 


Q ss_pred             hccchhhhhhccCCCCcccccc
Q 021201           86 VVPRKLAEAKNKKGLTPRALFS  107 (316)
Q Consensus        86 lv~~~~~~~~N~~G~Tp~~l~~  107 (316)
                        .+...+..+.+|.++.+.+.
T Consensus        62 --~ga~~~~~~~~~~~~~~~a~   81 (228)
T d1k1aa_          62 --AGASPMALDRHGQTAAHLAC   81 (228)
T ss_dssp             --TTCCTTCCCTTSCCHHHHHH
T ss_pred             --cccccccccccccccccccc
Confidence              12344556666777766543

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.09  E-value=1.7e-11  Score=102.89  Aligned_cols=60  Identities=17%  Similarity=-0.006  Sum_probs=53.7

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV   66 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L   66 (316)
                      ++.+|.+|.||||+|+.+|+.+++++|++  .+++    +|.+|.+|+||||+|++.|+.+++++|
T Consensus       149 ~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~--~gad----~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         149 RDAQDDKDETPLFLAAREGSYEASKALLD--NFAN----REITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHH--TTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccccccccccchhccccHHHHHHHHHH--CCCC----CCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            35679999999999999999999999999  7764    689999999999999999998777654

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.07  E-value=2.5e-11  Score=97.28  Aligned_cols=59  Identities=14%  Similarity=0.096  Sum_probs=52.4

Q ss_pred             ccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc
Q 021201            2 WKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV   66 (316)
Q Consensus         2 ~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L   66 (316)
                      ..+|.+|+||||+|++.|+.+++++|++  .+.+    +|.+|.+|+||||+|+..|+.+++++|
T Consensus        94 ~~~~~~g~T~L~~A~~~g~~~iv~~ll~--~gad----~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          94 NAKDMLKMTALHWATEHNHQEVVELLIK--YGAD----VHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHH--TTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccccCchHHHhhhhcchhheeeeccc--cccC----CcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            4578999999999999999999999999  7764    789999999999999999998766543

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=3.2e-11  Score=110.97  Aligned_cols=60  Identities=15%  Similarity=0.193  Sum_probs=52.9

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV   66 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L   66 (316)
                      |+.+|.+|+||||+|+++|+.++|++|++  +|++    +|.+|.+|+||||+|++.|+.+++++|
T Consensus       323 in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~--~GAd----~n~~d~~G~t~L~~A~~~~~~~iv~~L  382 (408)
T d1n11a_         323 VNAKTKLGYSPLHQAAQQGHTDIVTLLLK--NGAS----PNEVSSDGTTPLAIAKRLGYISVTDVL  382 (408)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHH--TTCC----SCCCCSSSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHH--CCCC----CCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            46789999999999999999999999999  7764    789999999999999999997766554

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1.4e-11  Score=97.62  Aligned_cols=75  Identities=16%  Similarity=0.076  Sum_probs=62.0

Q ss_pred             cHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhHhHHHHhccc
Q 021201           10 TIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQAVKKVVPR   89 (316)
Q Consensus        10 T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~~~v~~lv~~   89 (316)
                      ++||.|+..|+.+++++|++  .+.+    +|.+|.+|+||||+|+..++.++++.+                ++   .+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~--~g~d----~n~~d~~g~t~Lh~A~~~~~~~~~~~l----------------l~---~g   57 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIY--EVDD----PSLPNDEGITALHNAVCAGHTEIVKFL----------------VQ---FG   57 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTS--TTSS----CCCCCTTSCCHHHHHHHHTCHHHHHHH----------------HH---HT
T ss_pred             HHHHHHHHcCCHHHHHHHHH--cCCC----ccccccccccccccccccccccccccc----------------cc---cc
Confidence            57999999999999999999  7764    799999999999999999986655443                11   13


Q ss_pred             hhhhhhccCCCCccccccch
Q 021201           90 KLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        90 ~~~~~~N~~G~Tp~~l~~~~  109 (316)
                      .+.+.+|.+|+||++++...
T Consensus        58 ~~~~~~d~~g~tpLh~A~~~   77 (130)
T d1ycsb1          58 VNVNAADSDGWTPLHCAASC   77 (130)
T ss_dssp             CCTTCCCTTCCCHHHHHHHT
T ss_pred             cccccccccCcccccccchh
Confidence            46788999999999988654

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=8e-12  Score=98.30  Aligned_cols=96  Identities=10%  Similarity=0.101  Sum_probs=69.9

Q ss_pred             CCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cC------------chHH
Q 021201            7 NRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SG------------SALQ   72 (316)
Q Consensus         7 ~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~g------------aal~   72 (316)
                      .+.|+||+|+++|+.+++++|++  .+.+    +|.+|.+|+||||.|+ .|+.++++.|  .|            .+++
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~--~gad----~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~   74 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLE--AGAN----PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVH   74 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHT--TTCC----TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHH--cCCc----cccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence            46788999999999999999988  6653    6888889999998665 5776666554  11            2445


Q ss_pred             hHHHhhhHhHHHHhcc-chhhhhhccCCCCccccccch
Q 021201           73 MQRELLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        73 ~~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                      ...+.+..+.++.++. +.+++.+|++|+||++++.+.
T Consensus        75 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~  112 (125)
T d1bi7b_          75 DAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEEL  112 (125)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHH
T ss_pred             cccccccccccccccccccccccccCCCCCHHHHHHHc
Confidence            5555455566666554 467889999999999988654

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.04  E-value=2.6e-11  Score=97.13  Aligned_cols=19  Identities=11%  Similarity=-0.083  Sum_probs=10.4

Q ss_pred             hhhhhhccCCCCccccccc
Q 021201           90 KLAEAKNKKGLTPRALFSE  108 (316)
Q Consensus        90 ~~~~~~N~~G~Tp~~l~~~  108 (316)
                      .+++.+|++|+||++++.+
T Consensus       124 ad~~~~d~~g~Tpl~~A~~  142 (153)
T d1awcb_         124 ADVHTQSKFCKTAFDISID  142 (153)
T ss_dssp             CCTTCCCTTSCCHHHHHHH
T ss_pred             cCCcccCCCCCCHHHHHHH
Confidence            3445556666666665543

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=6.4e-12  Score=107.40  Aligned_cols=81  Identities=19%  Similarity=0.153  Sum_probs=59.2

Q ss_pred             CCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhHhHHHHh
Q 021201            7 NRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQAVKKV   86 (316)
Q Consensus         7 ~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~~~v~~l   86 (316)
                      +|+||||+|+.+|+.+++..|++  ........+|.+|.+|+||||+|+..++.++++.+                    
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~--~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L--------------------   58 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIR--QVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL--------------------   58 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-------CCCCCCCCTTCCCHHHHHHHTTCHHHHHCC--------------------
T ss_pred             CCChHHHHHHHcCCHHHHHHHHH--HHHhCCCCcccCCCCCCcccccccccccccccccc--------------------
Confidence            69999999999999877666554  21111123799999999999999999987665544                    


Q ss_pred             cc-chhhhhhccCCCCccccccch
Q 021201           87 VP-RKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        87 v~-~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                      +. ..+++.+|.+|+||++.+...
T Consensus        59 ~~~g~d~~~~d~~g~t~l~~~~~~   82 (221)
T d1iknd_          59 LGAGCDPELRDFRGNTPLHLACEQ   82 (221)
T ss_dssp             CSCCCCSCCCCTTCCCHHHHHHHH
T ss_pred             cccccccccccccccccccccccc
Confidence            21 345678889999998876543

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=3.6e-11  Score=110.65  Aligned_cols=79  Identities=23%  Similarity=0.298  Sum_probs=50.1

Q ss_pred             cCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhHhHHH
Q 021201            5 DENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQAVK   84 (316)
Q Consensus         5 D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~~~v~   84 (316)
                      +..++||||.|+.+++.++++++++  .+.+    +|.+|.+|+||||+|++.|+.+++++|                  
T Consensus       294 ~~~~~t~L~~~~~~~~~~~~~~ll~--~g~~----in~~d~~G~T~Lh~A~~~g~~~iv~~L------------------  349 (408)
T d1n11a_         294 TRMGYTPLHVASHYGNIKLVKFLLQ--HQAD----VNAKTKLGYSPLHQAAQQGHTDIVTLL------------------  349 (408)
T ss_dssp             CSSCCCHHHHHHHSSCSHHHHHHHH--TTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHH------------------
T ss_pred             cccccccchhhcccCcceeeeeecc--cccc----ccccCCCCCCHHHHHHHcCCHHHHHHH------------------
Confidence            3344444444444444444444444  3322    577777777777777777776554433                  


Q ss_pred             Hhc-cchhhhhhccCCCCccccccch
Q 021201           85 KVV-PRKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        85 ~lv-~~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                        + .+++++.+|++|+||++++.+.
T Consensus       350 --l~~GAd~n~~d~~G~t~L~~A~~~  373 (408)
T d1n11a_         350 --LKNGASPNEVSSDGTTPLAIAKRL  373 (408)
T ss_dssp             --HHTTCCSCCCCSSSCCHHHHHHHT
T ss_pred             --HHCCCCCCCCCCCCCCHHHHHHHc
Confidence              3 2467889999999999998765

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.99  E-value=5.9e-11  Score=103.46  Aligned_cols=59  Identities=19%  Similarity=0.216  Sum_probs=53.2

Q ss_pred             ccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc
Q 021201            2 WKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV   66 (316)
Q Consensus         2 ~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L   66 (316)
                      +.+|..|+||||+|+++|+.+++++|++  .+++    +|.+|.+|+||||+|++.|+.+++++|
T Consensus       215 ~~~d~~g~tpL~~A~~~g~~~iv~~Ll~--~gad----in~~d~~G~T~L~~A~~~~~~~iv~lL  273 (277)
T d2fo1e1         215 DKQDEDGKTPIMLAAQEGRIEVVMYLIQ--QGAS----VEAVDATDHTARQLAQANNHHNIVDIF  273 (277)
T ss_dssp             TCCCTTCCCHHHHHHHHTCHHHHHHHHH--TTCC----SSCCCSSSCCHHHHHHHTTCHHHHHHH
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHH--CcCC----CCCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence            4578999999999999999999999999  7764    799999999999999999998877654

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=2.2e-10  Score=92.60  Aligned_cols=102  Identities=15%  Similarity=0.098  Sum_probs=69.4

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--c-----------
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--S-----------   67 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~-----------   67 (316)
                      ++.+|..|+||||+|+ +++.+++++|++  .+.+    +|.++.+|++|||+|+..++.++.+.+  .           
T Consensus        29 ~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~--~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~  101 (156)
T d1bd8a_          29 PDALNRFGKTALQVMM-FGSTAIALELLK--QGAS----PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTG  101 (156)
T ss_dssp             TTCCCTTSCCHHHHSC-TTCHHHHHHHHH--TTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTS
T ss_pred             CCccCCCCCccccccc-cccccccccccc--cccc----ccccccccccccccccccccccccccccccccccccccCCC
Confidence            3567888889998886 477888888887  5443    466777777777777777765544332  1           


Q ss_pred             CchHHhHHHhhhHhHHHHhccchhhhhhccCCCCccccccch
Q 021201           68 GSALQMQRELLWFQAVKKVVPRKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        68 gaal~~~~el~w~~~v~~lv~~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                      ..+++.....+..+.++.++...+++.+|.+|+||++++.+.
T Consensus       102 ~t~L~~A~~~~~~~i~~~L~~~~~~~~~d~~G~TpL~~A~~~  143 (156)
T d1bd8a_         102 ALPIHLAVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQR  143 (156)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHTTSCTTCCCTTSCCHHHHHHHS
T ss_pred             CeeeccccccccccccccccccccccccCCCCCCHHHHHHHc
Confidence            133444444444555555555667888999999999988764

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=9.4e-11  Score=91.96  Aligned_cols=59  Identities=19%  Similarity=0.131  Sum_probs=42.9

Q ss_pred             ccccCCCC-cHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc
Q 021201            2 WKCDENRY-TIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV   66 (316)
Q Consensus         2 ~~~D~~G~-T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L   66 (316)
                      +.+|..|. ||||+|+++|+.+++++|++  .+.+    +|.+|.+|+||||+|++.|+.+++++|
T Consensus        62 ~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~--~ga~----~~~~d~~G~T~l~~A~~~g~~~~v~~L  121 (125)
T d1bi7b_          62 NCADPATLTRPVHDAAREGFLDTLVVLHR--AGAR----LDVRDAWGRLPVDLAEELGHRDVARYL  121 (125)
T ss_dssp             CCCCTTTCCCHHHHHHHHTCHHHHHHHHH--HTCC----SSCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccc--cccc----cccccCCCCCHHHHHHHcCCHHHHHHH
Confidence            44566655 58888888888888888887  6553    577888888888888888877666554

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=1.7e-10  Score=93.24  Aligned_cols=58  Identities=21%  Similarity=0.235  Sum_probs=42.8

Q ss_pred             ccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc
Q 021201            2 WKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV   66 (316)
Q Consensus         2 ~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L   66 (316)
                      +.+|++|+||||+|++.|+.+++++|++  .. +    ++.+|.+|+||||+|+..|+.+++++|
T Consensus        95 n~~~~~~~t~L~~A~~~~~~~i~~~L~~--~~-~----~~~~d~~G~TpL~~A~~~g~~~iv~~L  152 (156)
T d1bd8a_          95 NVPDGTGALPIHLAVQEGHTAVVSFLAA--ES-D----LHRRDARGLTPLELALQRGAQDLVDIL  152 (156)
T ss_dssp             CCCCTTSCCHHHHHHHHTCHHHHHHHHT--TS-C----TTCCCTTSCCHHHHHHHSCCHHHHHHH
T ss_pred             ccccCCCCeeeccccccccccccccccc--cc-c----ccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            4567778888888888888888887765  22 1    577888888888888888886665544

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=98.92  E-value=8.1e-12  Score=115.05  Aligned_cols=101  Identities=13%  Similarity=0.034  Sum_probs=60.5

Q ss_pred             ccccCCCCcHHhHHHHCCCHHHHHH---HhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cCchH-----
Q 021201            2 WKCDENRYTIFHIAVSNRQVELFKF---IDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SGSAL-----   71 (316)
Q Consensus         2 ~~~D~~G~T~LH~Av~~~~~~iv~~---Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~gaal-----   71 (316)
                      +.+|.+|+|+||+|+++||.+++++   |++  .++.    +|.+|.+|+||||+||..|+.++++.|  .|+..     
T Consensus        84 ~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~--~~~~----in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~  157 (346)
T d2ajaa1          84 HKKGIKSEVICFVAAITGCSSALDTLCLLLT--SDEI----VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMI  157 (346)
T ss_dssp             HHHTCCHHHHHHHHHHHCCHHHHHHHTTC----CCSS----CC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHH
T ss_pred             HhccCCCCcHHHHHHHhCCHHHHHHHHHHHh--CCCc----ccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccc
Confidence            4567788888888888888877765   455  4432    688888888888888888888887766  33322     


Q ss_pred             --------HhHHHhhhHhHHHHhccc----hhhhhhccCCCCccccccc
Q 021201           72 --------QMQRELLWFQAVKKVVPR----KLAEAKNKKGLTPRALFSE  108 (316)
Q Consensus        72 --------~~~~el~w~~~v~~lv~~----~~~~~~N~~G~Tp~~l~~~  108 (316)
                              +...+-++.+.|+.++..    ...+.++.+|.||+..+.+
T Consensus       158 ~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~  206 (346)
T d2ajaa1         158 QAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVG  206 (346)
T ss_dssp             SHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHST
T ss_pred             ccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhh
Confidence                    222233334555554421    2234455556666665543

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1.6e-10  Score=101.11  Aligned_cols=59  Identities=20%  Similarity=0.208  Sum_probs=51.9

Q ss_pred             ccccCCCCcHHhHHHHCCCHHHHHHHhhcch-hhhhhhhcccCCCCCChHHHHHhhhCCCCccccc
Q 021201            2 WKCDENRYTIFHIAVSNRQVELFKFIDADDM-KAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV   66 (316)
Q Consensus         2 ~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~-~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L   66 (316)
                      +.+|.+|+||||+|+++|+.+++++|++  . +.    .+|.+|.+|+||||+|++.++.+++++|
T Consensus       213 n~~~~~g~t~L~~a~~~~~~~~v~~lL~--~~g~----din~~d~~G~TpL~~A~~~~~~eiv~~L  272 (285)
T d1wdya_         213 NVRGERGKTPLILAVEKKHLGLVQRLLE--QEHI----EINDTDSDGKTALLLAVELKLKKIAELL  272 (285)
T ss_dssp             SCCCTTSCCHHHHHHHTTCHHHHHHHHH--SSSC----CTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CccCCCCCCccchhhhcCcHHHHHHHHH--cCCC----CCcCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            5678899999999999999999999997  4 33    3799999999999999999998877665

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=2.6e-10  Score=91.42  Aligned_cols=50  Identities=16%  Similarity=0.218  Sum_probs=40.7

Q ss_pred             cHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc
Q 021201           10 TIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV   66 (316)
Q Consensus        10 T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L   66 (316)
                      |+||+|+++|+.+++++|++  .+.+    +|.+|.+|+||||+|+ .++.++++++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~--~g~d----~n~~d~~g~TpL~~A~-~~~~ei~~~L   52 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQ--NNVN----VNAQNGFGRTALQVMK-LGNPEIARRL   52 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTT--SCCC----TTCCCTTSCCHHHHCC-SSCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHH--CCCC----cCccCCcccccccccc-cccccccccc
Confidence            78999999999999999998  6654    6888999999999876 5677766554

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=4e-10  Score=93.28  Aligned_cols=81  Identities=17%  Similarity=0.108  Sum_probs=67.3

Q ss_pred             ccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhHhHH
Q 021201            4 CDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQAV   83 (316)
Q Consensus         4 ~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~~~v   83 (316)
                      .+..|+++||.|++++..++++.+++  .+..    .+.+|.+|+||||+|+..|+.++++.|                +
T Consensus       140 ~~~~~~~~l~~a~~~~~~~~~~~~~~--~~~~----~~~~d~~g~t~L~~A~~~g~~~~v~~L----------------l  197 (228)
T d1k1aa_         140 DIKSGRSPLIHAVENNSLSMVQLLLQ--HGAN----VNAQMYSGSSALHSASGRGLLPLVRTL----------------V  197 (228)
T ss_dssp             CTTTCCCHHHHHHHTTCHHHHHHHHH--TTCC----TTCBCTTSCBHHHHHHHHTCHHHHHHH----------------H
T ss_pred             cccchhhHHHHHHHhhhhhhhhhhhh--hccc----cccccccCcchHHHHHHcCCHHHHHHH----------------H
Confidence            45679999999999999999999999  6643    688999999999999999997665444                1


Q ss_pred             HHhccchhhhhhccCCCCccccccch
Q 021201           84 KKVVPRKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        84 ~~lv~~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                      +   .+.+++.+|.+|+||++++.+.
T Consensus       198 ~---~Gad~n~~d~~G~TpL~~A~~~  220 (228)
T d1k1aa_         198 R---SGADSSLKNCHNDTPLMVARSR  220 (228)
T ss_dssp             H---TTCCTTCCCTTSCCTTTTCSSH
T ss_pred             H---CCCCCCCCCCCCCCHHHHHHhC
Confidence            1   2457889999999999998754

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.82  E-value=5.9e-10  Score=94.60  Aligned_cols=79  Identities=16%  Similarity=0.154  Sum_probs=57.2

Q ss_pred             CcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhHhHHHHhcc
Q 021201            9 YTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQAVKKVVP   88 (316)
Q Consensus         9 ~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~~~v~~lv~   88 (316)
                      .+|||+|+++|+.++++.|++  ....   .++.+|.+|+||||+|+..|+.++++.|                ++....
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~--~~~~---~~~~~d~~G~TpL~~A~~~g~~~iv~~L----------------l~~ga~   59 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLH--SKPS---LLLQKDQDGRIPLHWSVSFQAHEITSFL----------------LSKMEN   59 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHH--HCGG---GTTCCCTTSCCHHHHHHHTTCHHHHHHH----------------HTTCTT
T ss_pred             CHhHHHHHHcCCHHHHHHHHH--cCCC---cccccCCCCCCHHHHHHHcCCccccchh----------------hhhhcc
Confidence            489999999999999999988  4322   3699999999999999999997776555                111111


Q ss_pred             chhhhhhccCCCCccccccc
Q 021201           89 RKLAEAKNKKGLTPRALFSE  108 (316)
Q Consensus        89 ~~~~~~~N~~G~Tp~~l~~~  108 (316)
                      ....+..|+.|.+|.+++..
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~   79 (229)
T d1ixva_          60 VNLDDYPDDSGWTPFHIACS   79 (229)
T ss_dssp             CCGGGCCCTTSCCHHHHHHH
T ss_pred             cccccccccccccccccccc
Confidence            12234556677777776543

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=2.1e-10  Score=91.96  Aligned_cols=83  Identities=16%  Similarity=0.119  Sum_probs=64.7

Q ss_pred             CccccCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhH
Q 021201            1 MWKCDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWF   80 (316)
Q Consensus         1 i~~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~   80 (316)
                      ++.+|.+|+||||+|+ .++.+++++|++  .+++    ++.+|.+|.|+||.++..++.+.+..+              
T Consensus        27 ~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~--~~a~----~~~~~~~~~~~l~~~~~~~~~~~~~~l--------------   85 (156)
T d1ihba_          27 VNAQNGFGRTALQVMK-LGNPEIARRLLL--RGAN----PDLKDRTGFAVIHDAARAGFLDTLQTL--------------   85 (156)
T ss_dssp             TTCCCTTSCCHHHHCC-SSCHHHHHHHHH--TTCC----TTCCCTTSCCHHHHHHHHTCHHHHHHH--------------
T ss_pred             cCccCCcccccccccc-cccccccccccc--cccc----cccccccCccccccccccccccccccc--------------
Confidence            4678999999999886 789999999999  7654    688999999999999999885443221              


Q ss_pred             hHHHHhccchhhhhhccCCCCccccccch
Q 021201           81 QAVKKVVPRKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        81 ~~v~~lv~~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                        ++   .....+..|..|.+|++++...
T Consensus        86 --~~---~~~~~~~~~~~~~~~l~~a~~~  109 (156)
T d1ihba_          86 --LE---FQADVNIEDNEGNLPLHLAAKE  109 (156)
T ss_dssp             --HH---TTCCTTCCCTTSCCHHHHHHHT
T ss_pred             --cc---cccccccccccccccccccccc
Confidence              11   1234677889999999876554

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=98.78  E-value=4.2e-11  Score=110.15  Aligned_cols=70  Identities=11%  Similarity=0.079  Sum_probs=51.0

Q ss_pred             cccCCCCCChHHHHHhhhCCCCcccc---c--cC-----------chHHhHHHhhhHhHHHHhccc-hhhhhhc--cCCC
Q 021201           40 VDSTDGEGNNILHLAGKLAPPDRLNV---V--SG-----------SALQMQRELLWFQAVKKVVPR-KLAEAKN--KKGL  100 (316)
Q Consensus        40 in~~D~~GnTpLHlAa~~~~~~~v~~---L--~g-----------aal~~~~el~w~~~v~~lv~~-~~~~~~N--~~G~  100 (316)
                      ++.+|.+|+||||+||..|+.+.++.   |  .|           .+++...+-++.+.|+.++.. .+.+.++  .+|.
T Consensus        83 ~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~  162 (346)
T d2ajaa1          83 AHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENY  162 (346)
T ss_dssp             HHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHH
T ss_pred             HHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCC
Confidence            57889999999999999999766543   3  33           345566666777778877743 4556554  4689


Q ss_pred             Cccccccch
Q 021201          101 TPRALFSEQ  109 (316)
Q Consensus       101 Tp~~l~~~~  109 (316)
                      ||++++...
T Consensus       163 t~L~~Aa~~  171 (346)
T d2ajaa1         163 HAFRLAAEN  171 (346)
T ss_dssp             HHHHHHHHT
T ss_pred             ChhHHHHHH
Confidence            999988765

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.78  E-value=7.6e-10  Score=97.34  Aligned_cols=99  Identities=18%  Similarity=0.160  Sum_probs=74.6

Q ss_pred             cCCCCcHHhHHHHCCCHHHHHHHhhcchhhhhhhhcccCCCCCChHHHHHhhhCCCCccccc--cC-----------chH
Q 021201            5 DENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGKLAPPDRLNVV--SG-----------SAL   71 (316)
Q Consensus         5 D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~~~~lin~~D~~GnTpLHlAa~~~~~~~v~~L--~g-----------aal   71 (316)
                      +.+|.|+||.||+.|+.++|++|++  .|++    +|.+|.+|.||||+|+..|+.+++++|  .|           .++
T Consensus        37 ~~~~~t~l~~A~~~G~~~~v~~Ll~--~Gad----vn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L  110 (291)
T d1s70b_          37 KFDDGAVFLAACSSGDTEEVLRLLE--RGAD----INYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPL  110 (291)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHH--HCCC----TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             CCCCchHHHHHHHcCCHHHHHHHHH--CCCC----CCccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccc
Confidence            3456799999999999999999999  7764    799999999999999999999888765  22           234


Q ss_pred             HhHHHhhhHhHHHHhcc-chhhhhhccCCCCccccccch
Q 021201           72 QMQRELLWFQAVKKVVP-RKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        72 ~~~~el~w~~~v~~lv~-~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                      +........+.++.++. +...+..|.+|.+|++++...
T Consensus       111 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~  149 (291)
T d1s70b_         111 HAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEE  149 (291)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSH
T ss_pred             cccccccccchhhcccccCcccccccccCcccccccccc
Confidence            44444444455555543 345667888999998877644

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=7.6e-08  Score=83.49  Aligned_cols=86  Identities=17%  Similarity=0.114  Sum_probs=62.1

Q ss_pred             cccCCCCcHHhHHHHCCCHHHHHHHhhcchhhh------------------------h---------hhhcccCCCCCCh
Q 021201            3 KCDENRYTIFHIAVSNRQVELFKFIDADDMKAI------------------------A---------DLLVDSTDGEGNN   49 (316)
Q Consensus         3 ~~D~~G~T~LH~Av~~~~~~iv~~Ll~~~~~~~------------------------~---------~~lin~~D~~GnT   49 (316)
                      ..+..|+||||+|+++|+.+++++|++.. +..                        .         ...+|.+|.+|+|
T Consensus       143 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t  221 (285)
T d1wdya_         143 RLRKGGATALMDAAEKGHVEVLKILLDEM-GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKT  221 (285)
T ss_dssp             HTTCCCCCHHHHHHHHTCHHHHHHHHHTS-CCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCC
T ss_pred             hhcccCchHHHHHHHcCCHHHHHHHHhcc-CCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCC
Confidence            35678999999999999999999998620 100                        0         0013567888888


Q ss_pred             HHHHHhhhCCCCccccccCchHHhHHHhhhHhHHHHhc--cchhhhhhccCCCCccccccch
Q 021201           50 ILHLAGKLAPPDRLNVVSGSALQMQRELLWFQAVKKVV--PRKLAEAKNKKGLTPRALFSEQ  109 (316)
Q Consensus        50 pLHlAa~~~~~~~v~~L~gaal~~~~el~w~~~v~~lv--~~~~~~~~N~~G~Tp~~l~~~~  109 (316)
                      |||.|+..++.+.+                    +.++  .+.+++.+|.+|.||++++.+.
T Consensus       222 ~L~~a~~~~~~~~v--------------------~~lL~~~g~din~~d~~G~TpL~~A~~~  263 (285)
T d1wdya_         222 PLILAVEKKHLGLV--------------------QRLLEQEHIEINDTDSDGKTALLLAVEL  263 (285)
T ss_dssp             HHHHHHHTTCHHHH--------------------HHHHHSSSCCTTCCCTTSCCHHHHHHHT
T ss_pred             ccchhhhcCcHHHH--------------------HHHHHcCCCCCcCCCCCCCCHHHHHHHc
Confidence            88888887775443                    3333  2467889999999999998765

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.27  E-value=8.8e-08  Score=85.32  Aligned_cols=48  Identities=21%  Similarity=0.329  Sum_probs=37.1

Q ss_pred             cccCCCCCChHHHHHhhhCCCCccccccCchHHhHHHhhhHhHHHHhc-cchhhhhhccCCCCcccccc
Q 021201           40 VDSTDGEGNNILHLAGKLAPPDRLNVVSGSALQMQRELLWFQAVKKVV-PRKLAEAKNKKGLTPRALFS  107 (316)
Q Consensus        40 in~~D~~GnTpLHlAa~~~~~~~v~~L~gaal~~~~el~w~~~v~~lv-~~~~~~~~N~~G~Tp~~l~~  107 (316)
                      +|.+|.+|+||||+|++.|+.+++++|                    + .+++++.+|++|+||+|.+.
T Consensus       252 in~~D~~G~TpLh~A~~~g~~~iv~~L--------------------l~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         252 LNAQDSNGDTCLNIAARLGNISIVDAL--------------------LDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCHHHHHHH--------------------HHTTCCTTCCCTTSCCGGGGTC
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHH--------------------HHCCCCCCCCCCCCCCHHHHcC
Confidence            577888888888888888886655444                    3 24678999999999999863