Citrus Sinensis ID: 021206

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310------
Protein Sequence
MRPKPQSPMNIKLILLCAFFLLLLLFITKSTFSSSSSSSSSSSQLQNPLSTNSTETPDDNIQIQDQAETNNSPNTNCPTTTPPSPLTETCTKTPPSLANALVHYATTNITPQQTVKEISVSLRVLAQKSPCNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEKFPTLESYHVEYDTKVNEADELMNAVGSDEECRVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGRMTAIYTAGLMARNRESGETDVFVHDVDRVVEDKFSKAFLCEGYLKEQEGRIRHFVVPSHRTRSARPFCPS
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccEEEEcccccHHHHHHHcccccEEEEEccHHHHHHHHHHccccEEEEEEEccccccHHHHHHHHccccccccccccccccccccccccccccccccccEEEEEccccccccccccHHHHHHHHHHHHcccccccEEEEEcccHHHHHHHHHHHccccccHHccccEEEEEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccEEEEcccccHHHHHHHcccccEEEEcccHHHHHHHHHHccccEEEEEEEcccHccHHHHHHHHHcccccccccccccccccEcccccccHHEEcccEEEEEEccccccccccccHHHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHHHHcHHHHHHccccEEEEEEcccccccccccccc
Coil and Loop (DISEMBL)
mrpkpqspmnIKLILLCAFFLLLLLFITkstfsssssssssssqlqnplstnstetpddniqiqdqaetnnspntncptttppspltetctktppsLANALVHYattnitpqqtVKEISVSLRVLAQKSPCNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEkfptlesyhveydTKVNEADELMnavgsdeecrvvtdprfskcrlalkgfpsevydVEWDLIMvdaptgyheaapgrMTAIYTAGLMarnresgetdvfvhdvdrvveDKFSKAFLCEGYlkeqegrirhfvvpshrtrsarpfcps
Flexible Loop (DISEMBL)
mrpkpqspmNIKLILLCAFFLLLLLFITKSTFsssssssssssqlqnplstnstetpdDNIQIQDQaetnnspntncPTTTPPSPLTETCTKTPPSLANALVHYATTNITPQQTVKEISVSLRVLAQKSPCNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEKFPTLESYHVEYDTKVNEADELMNAvgsdeecrvvtdpRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGRMTAIYTAGLMARNRESGETDVFVHDVDRVVEDKFSKAFLCEgylkeqegrirhfvvpshrtrsarpfcps
Low Complexity Region (SEG)
MRPKPQSPMNIKlillcafflllllfitkstfsssssssssssqlqnplstnsTETPDDNIQIQDQAetnnspntncptttppspltetctKTPPSLANALVHYATTNITPQQTVKEISVSLRVLAQKSPCNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEKFPTLESYHVEYDTKVNEADELMNAVGSDEECRVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGRMTAIYTAGLMARNRESGETDVFVHDVDRVVEDKFSKAFLCEGYLKEQEGRIRHFVVPSHRTRSARPFCPS
Disordered region (IsUnstruct)
*********NIKLILLCAFFLLLLLFITK*******************************************************************LANALVHYATTNITPQQTVKEISVSLRVLAQKSPCNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEKFPTLESYHVEYDTKVNEADELMNAVGSDEECRVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGRMTAIYTAGLMARNRESGETDVFVHDVDRVVEDKFSKAFLCEGYLKEQEGRIRHFVV**************
Disordered Region (DISOPRED)
*************ILLCAFFLLLLLFITKST****************PLSTNSTETPDDN************************************LANALVHYATTNITPQQTVKEISVSLRVLAQKSPCNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEKFPTLESYHVEYDTKVNEADELM*AVG*****RVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGRMTAIYTAGLMARNRESGETDVFVHDVDRVVEDKFSKAFLCEGYLKEQEGRIRHFVVPSHRTRS**PFCPS
Disordered Region (DISEMBL)
********MNIKLILLCAFFLLLLLFITKS*************************TPDDNIQIQDQAETNNSPNTNCPTTTPPSPLTETCTKTPPSLANALVHYATTNITPQQTVKEISVSLRVLAQKSPCNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEKFPTLESYHVEYDTKVNEADELMNAVGSDEECRVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGRMTAIYTAGLMARNRESGETDVFVHDVDRVVEDKFSKAFLCEGYLKEQEGRIRHFVVPS************
Disordered Region (DISPRO)
******SPMNIKLILLCAFFLLLLLFITKST**********************************************************CTKTPPSLANALVHYATTNITPQQTVKEISVSLRVLAQKSPCNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEKFPTLESYHVEYDTKVNEADELMNAVGSDEECRVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGRMTAIYTAGLMARNRESGETDVFVHDVDRVVEDKFSKAFLCEGYLKEQEGRIRHFVVPSH***********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRPKPQSPMNIKLILLCAFFLLLLLFITKSTFSSSSSSSSSSSQLQNPLSTNSTETPDDNIQIQDQAETNNSPNTNCPTTTPPSPLTETCTKTPPSLANALVHYATTNITPQQTVKEISVSLRVLAQKSPCNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEKFPTLESYHVEYDTKVNEADELMNAVGSDEECRVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGRMTAIYTAGLMARNRESGETDVFVHDVDRVVEDKFSKAFLCEGYLKEQEGRIRHFVVPSHRTRSARPFCPS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	316	2.2.26 [Sep-21-2011]
Q9LQ32	297	Glucuronoxylan 4-O-methyl	yes	no	0.768	0.818	0.666	1e-101
Q9T0F7	290	Glucuronoxylan 4-O-methyl	no	no	0.892	0.972	0.553	1e-100
Q6NMK1	282	Glucuronoxylan 4-O-methyl	no	no	0.876	0.982	0.565	1e-99
Q9FH92	317	Protein IRX15-LIKE OS=Ara	no	no	0.876	0.873	0.342	1e-44
Q9SNE5	322	Protein IRREGULAR XYLEM 1	no	no	0.743	0.729	0.399	6e-43

>sp|Q9LQ32|GXM3_ARATH Glucuronoxylan 4-O-methyltransferase 3 OS=Arabidopsis thaliana GN=GXM3 PE=1 SV=1

 Score =  368 bits (944), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 168/252 (66%), Positives = 205/252 (81%), Gaps = 9/252 (3%)

Query: 64  QDQAETNNSPNTNCPTTTPPSPLTETCTKTPPSLANALVHYATTNITPQQTVKEISVSLR 123
           Q++ ET +     CPTT       + CTK P SL++ALVHY T+N+TPQQT  E+SVS R
Sbjct: 48  QEEEETQHK-QEGCPTT-------QQCTKMPLSLSDALVHYVTSNVTPQQTFDEVSVSKR 99

Query: 124 VLAQKSPCNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEKFPTLESYHVEYDT 183
           VL +KSPCNFLVFGLG+DSLMW++LNHGGRTLF+EED++WI  + +KFP LESYHV YDT
Sbjct: 100 VLDKKSPCNFLVFGLGHDSLMWASLNHGGRTLFIEEDQAWIAIVTKKFPNLESYHVVYDT 159

Query: 184 KVNEADELMNAVGSDEECRVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAA 243
           KV ++D+LM  +G  EECR V+DPR SKC LALK FP++ Y+ +WDLIMVDAPTGYHE A
Sbjct: 160 KVKDSDKLME-LGRSEECRSVSDPRNSKCDLALKDFPADFYETKWDLIMVDAPTGYHEEA 218

Query: 244 PGRMTAIYTAGLMARNRESGETDVFVHDVDRVVEDKFSKAFLCEGYLKEQEGRIRHFVVP 303
           PGRM+AIYTAGL+ARNRE GETDVFVHDV+R VED+FS  FLC+GY++EQ GR+RHF +P
Sbjct: 219 PGRMSAIYTAGLLARNREDGETDVFVHDVNRPVEDEFSATFLCKGYMREQNGRLRHFTIP 278

Query: 304 SHRTRSARPFCP 315
           SHR R+ RPFCP
Sbjct: 279 SHRARAGRPFCP 290

Methyltransferase catalyzing 4-O-methylation of glucuronic acid side chains on xylan.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1EC: 2

>sp|Q9T0F7|GXM2_ARATH Glucuronoxylan 4-O-methyltransferase 2 OS=Arabidopsis thaliana GN=GXM2 PE=1 SV=1

 Score =  364 bits (934), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 176/318 (55%), Positives = 233/318 (73%), Gaps = 36/318 (11%)

Query: 1   MRPKPQSPMNIKLILLC-AFFLLLLLFITKSTFSSSSSSSSSSSQLQNPLSTNSTETPDD 59
           MR K QS ++ KLI +C +  +L +LF+ +++FSS+S+++                    
Sbjct: 1   MRNKSQSFISSKLIFICCSILVLFILFLKRASFSSNSTAT-------------------- 40

Query: 60  NIQIQDQAETNNSPNTNCPTTTPPSPLTETCTKTPPSLANALVHYATTNITPQQTVKEIS 119
              I+D+        + CP+T       + CTK P SL++ALVHY T+ ITPQQT  E+S
Sbjct: 41  ---IRDEYHQK----SKCPSTP------QQCTKLPTSLSDALVHYVTSEITPQQTFDEVS 87

Query: 120 VSLRVLAQKSPCNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEKFPTLESYHV 179
           VS RVL +KSPCNFLVFGLG+DSLMW++LNHGGRTLFLEED++WI  + +KFP LESYHV
Sbjct: 88  VSKRVLDKKSPCNFLVFGLGHDSLMWASLNHGGRTLFLEEDEAWIETVTKKFPNLESYHV 147

Query: 180 EYDTKVNEADELMNAVGSDEECRVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGY 239
            YDTKV ++++LM  +   E+C+ V+DPR SKC L+LKGFP++VY+ +WD+IMVDAPTGY
Sbjct: 148 VYDTKVKDSNKLME-LKRTEDCKAVSDPRDSKCALSLKGFPADVYETQWDVIMVDAPTGY 206

Query: 240 HEAAPGRMTAIYTAGLMARNR-ESGETDVFVHDVDRVVEDKFSKAFLCEGYLKEQEGRIR 298
           H+ APGRM+AIYTAGL+ARNR + GETDVFVHD++R VED+FS AFLC GY+KEQ+GR+R
Sbjct: 207 HDEAPGRMSAIYTAGLLARNRYDGGETDVFVHDINRPVEDEFSVAFLCGGYMKEQQGRLR 266

Query: 299 HFVVPSHRTRSARPFCPS 316
           HF +PSHR     PFCP+
Sbjct: 267 HFNIPSHRASFGTPFCPA 284

Methyltransferase catalyzing 4-O-methylation of glucuronic acid side chains on xylan.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 1

EC: 2

>sp|Q6NMK1|GXM1_ARATH Glucuronoxylan 4-O-methyltransferase 1 OS=Arabidopsis thaliana GN=GXM1 PE=1 SV=1

 Score =  362 bits (930), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 181/320 (56%), Positives = 226/320 (70%), Gaps = 43/320 (13%)

Query: 1   MRPKPQSPMNIKLILLCAFFLLLLLFITKSTFSSSSSSSSSSSQLQNPLSTNSTETPDDN 60
           MRPK      +K++L+     L+L+FI +ST +SS        + Q P  T ST      
Sbjct: 1   MRPKANQNHKLKVLLVFLLATLILIFIVRSTLTSSQ-------EHQTPQETRSTRC---- 49

Query: 61  IQIQDQAETNNSPNTNCPTTTPPSPLTETCTKTPPSLANALVHYATTNITPQQTVKEISV 120
                                     +  C K P SLA AL+HY+T+ ITPQQT+KEI+V
Sbjct: 50  --------------------------SGACNKLPRSLAQALIHYSTSVITPQQTLKEIAV 83

Query: 121 SLRVLAQKSPCNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEKFPTLESYHVE 180
           S RVL +KSPCNFLVFGLG+DSLMWS+LN+GGRT+FLEED++WI QIK +FP LESYHV 
Sbjct: 84  SSRVLGKKSPCNFLVFGLGHDSLMWSSLNYGGRTVFLEEDEAWIKQIKRRFPMLESYHVT 143

Query: 181 YDTKVNEADELMNAVGSDEECRVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYH 240
           YD+KVN+AD L+  VG   EC  + DPR+S C+LALKG P+E+Y+  WDLIMVDAPTGY+
Sbjct: 144 YDSKVNQADNLIE-VGKGPECTAIGDPRYSMCQLALKGLPAEIYETGWDLIMVDAPTGYY 202

Query: 241 EAAPGRMTAIYTAGLMARNR-ESGETDVFVHDVDRVVEDKFSKAFLCEGYLKEQEGRIRH 299
           + APGRMTAIYTAG+MARNR + GETDVFVHDV+R +EDKFSKAFLCEGY+K+QEGR+RH
Sbjct: 203 DEAPGRMTAIYTAGMMARNRKQGGETDVFVHDVNREIEDKFSKAFLCEGYMKKQEGRLRH 262

Query: 300 FVVPSHR----TRSARPFCP 315
           F++PS+R    + S RPFCP
Sbjct: 263 FIIPSYRDGSESESNRPFCP 282

Methyltransferase catalyzing 4-O-methylation of glucuronic acid side chains on xylan.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 1

EC: 2

>sp|Q9FH92|IX15L_ARATH Protein IRX15-LIKE OS=Arabidopsis thaliana GN=IRX15-L PE=2 SV=1

 Score =  180 bits (456), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 112/327 (34%), Positives = 171/327 (52%), Gaps = 50/327 (15%)

Query: 1   MRPKPQSPMNIKLILLCAF-------FLLLLLFITKSTFSSSSSSSSSSSQLQNPLSTNS 53
           + P  Q   +   + L AF       FLL LL+ T S  SS ++S++ SS + + ++T  
Sbjct: 14  VHPYIQKQTSTNRLWLLAFVSFFTIAFLLTLLYTTDSIISSKNNSATVSSAVNSAVTT-- 71

Query: 54  TETPDDNIQIQDQAETNNSPNTNCPTTTPPSPLTETCTKTPPSLANALVHYAT-TNITPQ 112
                                              T ++ P +  NA++HYA+ +N +  
Sbjct: 72  ----------------------------------ATISQLPTTAINAMLHYASRSNDSYH 97

Query: 113 QTVKEISVSLRVLAQKSP-CNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEKF 171
            +  E+     VL + SP CN LVFGL +++L+W +LNH GRT+F+EE++ +    +E  
Sbjct: 98  MSYGEMKSISDVLRRCSPPCNLLVFGLTHETLLWKSLNHNGRTVFIEENRYYAAYFEEIH 157

Query: 172 PTLESYHVEYDTKVNEADELMNAV--GSDEECRVVTDPRFSKCRLALKGFPSEVYDVEWD 229
           P +E + V+Y TK  EA EL++AV   +  ECR V +  FS C+L L   P+ VYDV+WD
Sbjct: 158 PEIEVFDVQYTTKAREARELVSAVKEAARNECRPVQNLLFSDCKLGLNDLPNHVYDVDWD 217

Query: 230 LIMVDAPTGYHEAAPGRMTAIYTAGLMARNRESG--ETDVFVHDVDRVVEDKFSKAFLCE 287
           +I+VD P G     PGRM++I+TA ++AR+++ G  +T VFVHD  R VE      FLC 
Sbjct: 218 VILVDGPRGDGGDVPGRMSSIFTAAVLARSKKGGNPKTHVFVHDYYRDVERLCGDEFLCR 277

Query: 288 GYLKEQEGRIRHFVVPSHRTRSARPFC 314
             L E    + H+V+      S + FC
Sbjct: 278 ENLVESNDLLAHYVLEKMDKNSTQ-FC 303

Required for xylan biosynthesis, but not directly involved in catalyzing the addition of sugars to the growing polymer.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SNE5|IRX15_ARATH Protein IRREGULAR XYLEM 15 OS=Arabidopsis thaliana GN=IRX15 PE=2 SV=1

 Score =  174 bits (442), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 99/248 (39%), Positives = 145/248 (58%), Gaps = 13/248 (5%)

Query: 75  TNCPTTTPPSPLTETCTKTPPSLANALVHYAT-TNITPQQT---VKEISVSLRVLAQKSP 130
           T   T +  SP++ +    P S  NAL+HYA+ +N +   +   +K IS  LR  A   P
Sbjct: 68  TGGSTPSASSPISNS--NLPTSAINALLHYASRSNDSFHMSYGEMKSISDVLRRCAP--P 123

Query: 131 CNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEKFPTLESYHVEYDTKVNEADE 190
           CN LVFGL +++L+W +LNH GRT+F+EE++ +    +E  P ++ + V+Y TK +EA E
Sbjct: 124 CNLLVFGLTHETLLWKSLNHNGRTVFIEENRYYAAYFEEIHPEIDVFDVQYTTKAHEAGE 183

Query: 191 LMNAV--GSDEECRVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGRMT 248
           L+ A    +  ECR V +  FS C+L L   P+ VYDV+WD+I VD P G     PGRM+
Sbjct: 184 LVTAAKEAAGNECRPVQNLLFSDCKLGLNDLPNHVYDVDWDVIFVDGPRGDAHEGPGRMS 243

Query: 249 AIYTAGLMARNRESG--ETDVFVHDVDRVVEDKFSKAFLCEGYLKEQEGRIRHFVVPSHR 306
           +I+TA ++AR+++ G  +T VFVHD  R VE      FLC   L E    + H+V+    
Sbjct: 244 SIFTAAVLARSKKGGTPKTHVFVHDYYRDVERLCGDEFLCRENLVESNDLLAHYVLDKMD 303

Query: 307 TRSARPFC 314
             S + FC
Sbjct: 304 KNSTK-FC 310

Required for xylan biosynthesis, but not directly involved in catalyzing the addition of sugars to the growing polymer.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	316
118484222	304	unknown [Populus trichocarpa]	0.949	0.986	0.695	1e-120
225460195	300	PREDICTED: uncharacterized protein LOC10	0.946	0.996	0.705	1e-119
357455541	298	hypothetical protein MTR_3g005710 [Medic	0.943	1.0	0.641	1e-117
255570903	301	conserved hypothetical protein [Ricinus	0.949	0.996	0.696	1e-117
224136083	226	predicted protein [Populus trichocarpa]	0.715	1.0	0.819	1e-113
224145096	234	predicted protein [Populus trichocarpa]	0.737	0.995	0.799	1e-113
449490174	287	PREDICTED: uncharacterized LOC101202991	0.787	0.867	0.731	1e-109
449441800	287	PREDICTED: uncharacterized protein LOC10	0.816	0.898	0.643	1e-106
356509479	306	PREDICTED: uncharacterized protein LOC10	0.930	0.960	0.612	1e-105
359496024	306	PREDICTED: uncharacterized protein LOC10	0.778	0.803	0.714	1e-104

>gi|118484222|gb|ABK93991.1| unknown [Populus trichocarpa]

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 222/319 (69%), Positives = 259/319 (81%), Gaps = 19/319 (5%)

Query: 1   MRP-KPQSPMNIKLILLCAFFLLLLLFITKSTFSSSSSSSSSSSQ---LQNPLSTNSTET 56
           MRP K QSP+NIK+I L  FFLL L+ +  S+FSS  S+ S  ++   L NP S+ ST+ 
Sbjct: 1   MRPNKNQSPINIKIITLSLFFLLFLVLVAWSSFSSPRSNPSPKAENDDLTNPSSSLSTDE 60

Query: 57  PDDNIQIQDQAETNNSPNTNCPTTTPPSPLTETCTKTPPSLANALVHYATTNITPQQTVK 116
            D              P  + P   P  PLT TCTKTPPSLANALVHY TTNITPQQT+K
Sbjct: 61  ED-------------QPKPSTPAC-PSLPLTPTCTKTPPSLANALVHYVTTNITPQQTLK 106

Query: 117 EISVSLRVLAQKSPCNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEKFPTLES 176
           EISV+LRVL +KSPCNFLVFGLG+DSLMW++LNHGGRT+FLEEDK+WI QI EK P+LE+
Sbjct: 107 EISVTLRVLEKKSPCNFLVFGLGHDSLMWTSLNHGGRTVFLEEDKAWIEQITEKLPSLEA 166

Query: 177 YHVEYDTKVNEADELMNAVGSDEECRVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAP 236
           YHV YDT+V++AD LM   G  +EC+VV+DPRFSKC+L+LKGFPS++YD+EWDLIMVDAP
Sbjct: 167 YHVTYDTRVHQADGLME-TGMGDECKVVSDPRFSKCQLSLKGFPSDIYDMEWDLIMVDAP 225

Query: 237 TGYHEAAPGRMTAIYTAGLMARNRESGETDVFVHDVDRVVEDKFSKAFLCEGYLKEQEGR 296
           TGYH+ APGRMTAIYTAGLMARNRE+GETDVFVHDVDRVVEDKFSKAFLCEGYL EQEGR
Sbjct: 226 TGYHDEAPGRMTAIYTAGLMARNRENGETDVFVHDVDRVVEDKFSKAFLCEGYLTEQEGR 285

Query: 297 IRHFVVPSHRTRSARPFCP 315
           +RHF++PSHRTRS RPFCP
Sbjct: 286 LRHFIIPSHRTRSGRPFCP 304

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460195|ref|XP_002279765.1| PREDICTED: uncharacterized protein LOC100255018 [Vitis vinifera] gi|296090589|emb|CBI40958.3| unnamed protein product [Vitis vinifera]

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/316 (70%), Positives = 254/316 (80%), Gaps = 17/316 (5%)

Query: 1   MRP-KPQSPMNIKLILLCAFFLLLLLFITKSTFSSSSSSSSSSSQLQNPLSTNSTETPDD 59
           MRP KPQ+ +N+KLIL+C   LLL L + KS F+    +  S   L+  +S NST TP  
Sbjct: 1   MRPSKPQTSINLKLILVCFLCLLLFLLVFKSNFTPFQENHPSPI-LETHVS-NSTSTP-- 56

Query: 60  NIQIQDQAETNNSPNTNCPTTTPPSPLTETCTKTPPSLANALVHYATTNITPQQTVKEIS 119
                  A     P+ +CP+     PLT TCTKTPPSLA ALVHYAT NITPQQT  EIS
Sbjct: 57  -------AAEEQPPSRDCPSL----PLTPTCTKTPPSLAQALVHYATLNITPQQTFNEIS 105

Query: 120 VSLRVLAQKSPCNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEKFPTLESYHV 179
           VSLRVL +K+PCNFLVFGLG+DSLMW+ALNHGGRT+FLEEDKSWI QIK+K P+LESYHV
Sbjct: 106 VSLRVLQKKAPCNFLVFGLGHDSLMWTALNHGGRTIFLEEDKSWIEQIKQKLPSLESYHV 165

Query: 180 EYDTKVNEADELMNAVGSDEECRVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGY 239
            YD+KV++ADELM  VG  E+C+VV DPRFSKC+L+LKGFP+EVYDVEWDLIMVDAPTGY
Sbjct: 166 VYDSKVHQADELME-VGMGEDCKVVVDPRFSKCKLSLKGFPNEVYDVEWDLIMVDAPTGY 224

Query: 240 HEAAPGRMTAIYTAGLMARNRESGETDVFVHDVDRVVEDKFSKAFLCEGYLKEQEGRIRH 299
           H+ APGRM+AIYTAGLMARNRE GETDVFVHDVDRVVEDKFSKAFLCEGY +EQEGRIRH
Sbjct: 225 HDEAPGRMSAIYTAGLMARNREDGETDVFVHDVDRVVEDKFSKAFLCEGYFREQEGRIRH 284

Query: 300 FVVPSHRTRSARPFCP 315
           F +PSHRTRS R FCP
Sbjct: 285 FTIPSHRTRSGRSFCP 300

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455541|ref|XP_003598051.1| hypothetical protein MTR_3g005710 [Medicago truncatula] gi|355487099|gb|AES68302.1| hypothetical protein MTR_3g005710 [Medicago truncatula] gi|388503858|gb|AFK39995.1| unknown [Medicago truncatula]

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 202/315 (64%), Positives = 243/315 (77%), Gaps = 17/315 (5%)

Query: 1   MRPKPQSPMNIKLILLCAFFLLLLLFITKSTFSSSSSSSSSSSQLQNPLSTNSTETPDDN 60
           MR K Q   N+KL+++   FL L + + KS+  S             PL+T S    D  
Sbjct: 1   MRSKTQLSSNLKLVIISLVFLFLFIMLFKSSIFS----------FTQPLTTTSNTNNDSK 50

Query: 61  IQIQDQAETNNSPNTNCPTTTPPSPLTETCTKTPPSLANALVHYATTNITPQQTVKEISV 120
           I  Q   ET  +  + CP+     P+T TCTK PPSLANAL+HYATT ITPQQT++EISV
Sbjct: 51  ISSQ---ETEKTTKSECPSL----PITPTCTKNPPSLANALIHYATTKITPQQTIQEISV 103

Query: 121 SLRVLAQKSPCNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEKFPTLESYHVE 180
           S +VL +KSPCNFLVFGLG+DSLMW++LN+GGRT+FLEEDK+WI QI+ KFPTLESYHV 
Sbjct: 104 SAKVLQKKSPCNFLVFGLGHDSLMWTSLNYGGRTVFLEEDKTWIEQIQSKFPTLESYHVV 163

Query: 181 YDTKVNEADELMNAVGSDEECRVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYH 240
           YDTKV+++DELM      E+C+ V+DPRFSKC LALKGFPSE+YDVEWD+IMVDAPTGY 
Sbjct: 164 YDTKVHQSDELMKIGMEQEDCKKVSDPRFSKCGLALKGFPSEIYDVEWDVIMVDAPTGYF 223

Query: 241 EAAPGRMTAIYTAGLMARNRESGETDVFVHDVDRVVEDKFSKAFLCEGYLKEQEGRIRHF 300
           + APGRM+AIYTAGL+ARNRE+G+TDVFVHDVDR VED+FSKAFLCEGYL+EQEGRIRHF
Sbjct: 224 DGAPGRMSAIYTAGLIARNRENGDTDVFVHDVDRKVEDQFSKAFLCEGYLREQEGRIRHF 283

Query: 301 VVPSHRTRSARPFCP 315
            +PSHR R  RP+CP
Sbjct: 284 NIPSHRARLGRPYCP 298

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570903|ref|XP_002526403.1| conserved hypothetical protein [Ricinus communis] gi|223534265|gb|EEF35979.1| conserved hypothetical protein [Ricinus communis]

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/316 (69%), Positives = 250/316 (79%), Gaps = 16/316 (5%)

Query: 1   MRPKPQS-PMNIKLILLCAFFLLLLLFITKSTFSSSSSSSSSSSQLQNPLSTNSTETPDD 59
           MR K QS P+NIKLI+LC FFL + L +    +S+ SS SS SS +     +NST     
Sbjct: 1   MRSKTQSSPINIKLIILCFFFLSIFLLVV---WSNLSSQSSKSSPVPEAHLSNST----- 52

Query: 60  NIQIQDQAETNNSPNTNCPTTTPPSPLTETCTKTPPSLANALVHYATTNITPQQTVKEIS 119
              I D  +   S +T  P+  P  PLT  CTKTPPSLANALVHY TTNITPQQT+KEIS
Sbjct: 53  ---ILDTDQEQESSSTAAPSC-PSIPLT--CTKTPPSLANALVHYVTTNITPQQTLKEIS 106

Query: 120 VSLRVLAQKSPCNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEKFPTLESYHV 179
           V+LRVL +KSPCNFLVFGLG+DSLMW++LNHGGRT+FLEEDKSWI QIK K P+LESYHV
Sbjct: 107 VTLRVLEKKSPCNFLVFGLGHDSLMWTSLNHGGRTVFLEEDKSWIEQIKAKQPSLESYHV 166

Query: 180 EYDTKVNEADELMNAVGSDEECRVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGY 239
            Y+TKV++AD LM   G  EEC+ V+DPR S C+LALK FPS+VYD EWDLIMVDAPTGY
Sbjct: 167 TYETKVHQADGLMET-GMGEECKAVSDPRLSSCQLALKSFPSDVYDTEWDLIMVDAPTGY 225

Query: 240 HEAAPGRMTAIYTAGLMARNRESGETDVFVHDVDRVVEDKFSKAFLCEGYLKEQEGRIRH 299
           H+ APGRMTAIYTAGLMARNRE+GETDVFVHDVDRVVEDKFSKAFLCEGYL EQEGR+RH
Sbjct: 226 HDEAPGRMTAIYTAGLMARNRENGETDVFVHDVDRVVEDKFSKAFLCEGYLVEQEGRLRH 285

Query: 300 FVVPSHRTRSARPFCP 315
           F +PSHR R  RPFCP
Sbjct: 286 FTIPSHRARLGRPFCP 301

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136083|ref|XP_002327376.1| predicted protein [Populus trichocarpa] gi|222835746|gb|EEE74181.1| predicted protein [Populus trichocarpa]

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 186/227 (81%), Positives = 212/227 (93%), Gaps = 1/227 (0%)

Query: 89  TCTKTPPSLANALVHYATTNITPQQTVKEISVSLRVLAQKSPCNFLVFGLGYDSLMWSAL 148
           TCTKTPPSLANALVHY TTNITPQQT+KEISV+LRVL +KSPCNFLVFGLG+DSLMW++L
Sbjct: 1   TCTKTPPSLANALVHYVTTNITPQQTLKEISVTLRVLEKKSPCNFLVFGLGHDSLMWTSL 60

Query: 149 NHGGRTLFLEEDKSWINQIKEKFPTLESYHVEYDTKVNEADELMNAVGSDEECRVVTDPR 208
           NHGGRT+FLEEDK+WI QI EK P+LE+YHV YDT+V++AD LM   G  +EC+VV+DPR
Sbjct: 61  NHGGRTVFLEEDKAWIEQITEKLPSLEAYHVTYDTRVHQADGLMET-GMGDECKVVSDPR 119

Query: 209 FSKCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGRMTAIYTAGLMARNRESGETDVF 268
           FSKC+L+LKGFPS++YD+EWDLIMVDAPTGYH+ APGRMTAIYTAGLMARNRE+GETDVF
Sbjct: 120 FSKCQLSLKGFPSDIYDMEWDLIMVDAPTGYHDEAPGRMTAIYTAGLMARNRENGETDVF 179

Query: 269 VHDVDRVVEDKFSKAFLCEGYLKEQEGRIRHFVVPSHRTRSARPFCP 315
           VHDVDRVVEDKFSKAFLCEGYL EQEGR+RHF++PSHRTRS RPFCP
Sbjct: 180 VHDVDRVVEDKFSKAFLCEGYLTEQEGRLRHFIIPSHRTRSGRPFCP 226

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145096|ref|XP_002325525.1| predicted protein [Populus trichocarpa] gi|222862400|gb|EEE99906.1| predicted protein [Populus trichocarpa]

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 187/234 (79%), Positives = 211/234 (90%), Gaps = 1/234 (0%)

Query: 82  PPSPLTETCTKTPPSLANALVHYATTNITPQQTVKEISVSLRVLAQKSPCNFLVFGLGYD 141
           P  PLT TCTK PPSLANALVHY TTNITPQQT+KEISVSLRVL +KSPCNFLVFGLG+D
Sbjct: 2   PSLPLTPTCTKIPPSLANALVHYVTTNITPQQTLKEISVSLRVLEKKSPCNFLVFGLGHD 61

Query: 142 SLMWSALNHGGRTLFLEEDKSWINQIKEKFPTLESYHVEYDTKVNEADELMNAVGSDEEC 201
           SLMW++LNHGGRT+FLEEDK+WI QI+EK PTLESYHV YDT+V++AD LM   G  +EC
Sbjct: 62  SLMWTSLNHGGRTVFLEEDKAWIEQIREKLPTLESYHVTYDTRVHQADGLMET-GMGDEC 120

Query: 202 RVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGRMTAIYTAGLMARNRE 261
           +VV DPRFSKC+LALKGFP ++YDVEWDLIMVDAPTGYH+ APGRM AIYTAGLMARNRE
Sbjct: 121 KVVGDPRFSKCQLALKGFPGDIYDVEWDLIMVDAPTGYHDEAPGRMNAIYTAGLMARNRE 180

Query: 262 SGETDVFVHDVDRVVEDKFSKAFLCEGYLKEQEGRIRHFVVPSHRTRSARPFCP 315
           +G TDVFVHDVDRVVEDKFSKAFLCEGY+ EQEGR+RHF++P+HRT S +PFCP
Sbjct: 181 NGVTDVFVHDVDRVVEDKFSKAFLCEGYMTEQEGRLRHFIIPTHRTSSGKPFCP 234

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449490174|ref|XP_004158529.1| PREDICTED: uncharacterized LOC101202991 [Cucumis sativus]

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 185/253 (73%), Positives = 213/253 (84%), Gaps = 4/253 (1%)

Query: 66  QAETNNSP---NTNCPTTTPPSPLTETCTKTPPSLANALVHYATTNITPQQTVKEISVSL 122
           Q+  NN P    T+  T  P  P    CTKTPPS+ANAL+HYATTNITPQQT+KEISVS 
Sbjct: 36  QSSQNNPPPVIQTHVLTDEPECPSLPICTKTPPSVANALIHYATTNITPQQTLKEISVSA 95

Query: 123 RVLAQKSPCNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEKFPTLESYHVEYD 182
           R+L  KSPCNFLVFGLG+DSLMW+ALNHGGRT+FLEEDK+WI+QI+E+ P LE+YHV+YD
Sbjct: 96  RILETKSPCNFLVFGLGHDSLMWTALNHGGRTVFLEEDKAWIDQIQERLPNLEAYHVQYD 155

Query: 183 TKVNEADELMNAVGSDEECRVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYHEA 242
           TKV++ADELM  +G  EEC++V DPRF KC LALKGFPSE+Y++EWDLIMVDAPTGY   
Sbjct: 156 TKVHQADELMK-IGMGEECKIVGDPRFCKCELALKGFPSEIYEMEWDLIMVDAPTGYFNE 214

Query: 243 APGRMTAIYTAGLMARNRESGETDVFVHDVDRVVEDKFSKAFLCEGYLKEQEGRIRHFVV 302
           APGRM+AIYTAGLMARNR+ GETDVFVHDVDRVVED FS AFLC+GYL +QEGRIRHF +
Sbjct: 215 APGRMSAIYTAGLMARNRQEGETDVFVHDVDRVVEDNFSMAFLCKGYLTKQEGRIRHFSI 274

Query: 303 PSHRTRSARPFCP 315
           PSHRTR   PFCP
Sbjct: 275 PSHRTRPDTPFCP 287

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441800|ref|XP_004138670.1| PREDICTED: uncharacterized protein LOC101202991 [Cucumis sativus]

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 186/289 (64%), Positives = 218/289 (75%), Gaps = 31/289 (10%)

Query: 27  ITKSTFSSSSSSSSSSSQLQNPLSTNSTETPDDNIQIQDQAETNNSPNTNCPTTTPPSPL 86
           + +S F SS ++    +Q                              T+  T  P  P 
Sbjct: 30  VIRSGFQSSQNNPPPVTQ------------------------------THVLTDEPECPS 59

Query: 87  TETCTKTPPSLANALVHYATTNITPQQTVKEISVSLRVLAQKSPCNFLVFGLGYDSLMWS 146
              CTKTPPS+ANAL+HYATTNITPQQT+KEISVS R+L  KSPCNFLVFGLG+DSLMW+
Sbjct: 60  LPICTKTPPSVANALIHYATTNITPQQTLKEISVSARILETKSPCNFLVFGLGHDSLMWT 119

Query: 147 ALNHGGRTLFLEEDKSWINQIKEKFPTLESYHVEYDTKVNEADELMNAVGSDEECRVVTD 206
           ALNHGGRT+FLEEDK+WI+QI+E+ P LE+YHV+YDTKV++ADELM  +G  EEC++V D
Sbjct: 120 ALNHGGRTVFLEEDKAWIDQIQERLPNLEAYHVQYDTKVHQADELMK-IGMGEECKIVGD 178

Query: 207 PRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGRMTAIYTAGLMARNRESGETD 266
           PRF KC LALKGFPSE+Y++EWDLIMVDAPTGY   APGRM+AIYTAGLMARNR+ GETD
Sbjct: 179 PRFCKCELALKGFPSEIYEMEWDLIMVDAPTGYFNEAPGRMSAIYTAGLMARNRQEGETD 238

Query: 267 VFVHDVDRVVEDKFSKAFLCEGYLKEQEGRIRHFVVPSHRTRSARPFCP 315
           VFVHDVDRVVED FS AFLC+GYL +QEGRIRHF +PSHRTR   PFCP
Sbjct: 239 VFVHDVDRVVEDNFSMAFLCKGYLTKQEGRIRHFSIPSHRTRPDTPFCP 287

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509479|ref|XP_003523475.1| PREDICTED: uncharacterized protein LOC100780444 [Glycine max]

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/307 (61%), Positives = 229/307 (74%), Gaps = 13/307 (4%)

Query: 9   MNIKLILLCAFFLLLLLFITKSTFSSSSSSSSSSSQLQNPLSTNSTETPDDNIQIQDQAE 68
             + L+ L  F L +L+F             SS   L   L++ +  +  D I      E
Sbjct: 12  FKVALLSLAVFCLFILVF------------RSSIFSLSPQLTSQTNMSSSDTIVPVSPQE 59

Query: 69  TNNSPNTNCPTTTPPSPLTETCTKTPPSLANALVHYATTNITPQQTVKEISVSLRVLAQK 128
           T N+   +  +     PL   CTK PPSLANA++HYAT N+TPQQT+ EISVS RVL +K
Sbjct: 60  TENAGTPSSSSCPNSPPLNPPCTKAPPSLANAIIHYATANVTPQQTLHEISVSARVLEKK 119

Query: 129 SPCNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEKFPTLESYHVEYDTKVNEA 188
           SPCNFLVFGLG+DSLMW++LN+GGRT+FLEEDKSWI+QI+EK P+LESYHV YDT+V++A
Sbjct: 120 SPCNFLVFGLGHDSLMWTSLNYGGRTVFLEEDKSWIDQIQEKVPSLESYHVMYDTQVHQA 179

Query: 189 DELMNAVGSDEECRVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGRMT 248
           +ELM   G  E+C+ VTDPRFS+C LA KG PSEVYD++WD+IMVDAPTGY + APGRM+
Sbjct: 180 EELMKT-GMKEDCQKVTDPRFSRCPLAHKGLPSEVYDIDWDVIMVDAPTGYFDEAPGRMS 238

Query: 249 AIYTAGLMARNRESGETDVFVHDVDRVVEDKFSKAFLCEGYLKEQEGRIRHFVVPSHRTR 308
           AIYTAGL+ARN+E G+TDVFVHDVDR VED FSKAFLCEGY KEQEGRIRHF +PSHR+R
Sbjct: 239 AIYTAGLIARNKERGQTDVFVHDVDRKVEDMFSKAFLCEGYFKEQEGRIRHFNIPSHRSR 298

Query: 309 SARPFCP 315
             RPFCP
Sbjct: 299 LWRPFCP 305

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496024|ref|XP_002277141.2| PREDICTED: uncharacterized protein LOC100261855 [Vitis vinifera]

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/263 (71%), Positives = 216/263 (82%), Gaps = 17/263 (6%)

Query: 68  ETNNSPNTNCPTT-----TPPSP---LTETCTKTPPSLANALVHYATTNITPQQTVKEIS 119
           ET+ S +T CP T     +P  P    T TCTKTPPSLA ALVHYAT N+TPQQT  EIS
Sbjct: 46  ETHVSSST-CPATEEQLLSPACPSLLFTPTCTKTPPSLAQALVHYATLNVTPQQTFNEIS 104

Query: 120 VSLRVLAQKSPCNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEKFPTLESYHV 179
           V+ RVL +K+PCNFLVFGLG+DSLMW+ALNHGGRT+FLEEDKSW+ +IK+KFP++ESY+V
Sbjct: 105 VTSRVLQKKAPCNFLVFGLGHDSLMWTALNHGGRTVFLEEDKSWMERIKQKFPSVESYYV 164

Query: 180 EYDTKVNEADELMNAVGSDEECRVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGY 239
            YDTKV+EADEL+  VG  E+C+VV DPRFSK +L+LKGFP+EVYDVEWDLIMVDAPTGY
Sbjct: 165 VYDTKVHEADELLE-VGMGEDCKVVADPRFSKYKLSLKGFPNEVYDVEWDLIMVDAPTGY 223

Query: 240 HEAAPG-------RMTAIYTAGLMARNRESGETDVFVHDVDRVVEDKFSKAFLCEGYLKE 292
           H+ APG       RM AIYTAGLM RNRE GETDVFVH+V+RVVEDKFSKAFLCEGY +E
Sbjct: 224 HDEAPGRIGGVPTRMGAIYTAGLMGRNREDGETDVFVHNVNRVVEDKFSKAFLCEGYFRE 283

Query: 293 QEGRIRHFVVPSHRTRSARPFCP 315
           QEGRI  F +PSHRTRS R FCP
Sbjct: 284 QEGRIGRFTIPSHRTRSRRSFCP 306

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	316
TAIR|locus:2012728	297	GXMT1 "glucuronoxylan methyltr	0.705	0.750	0.709	5.9e-89
TAIR|locus:2012350	282	GXM3 "glucuronoxylan methyltra	0.705	0.790	0.703	3.2e-88
TAIR|locus:2140518	290	GXM2 "glucuronoxylan methyltra	0.708	0.772	0.676	3e-85
TAIR|locus:2013066	295	AT1G71690 "AT1G71690" [Arabido	0.708	0.759	0.676	8.5e-81
TAIR|locus:2019519	291	AT1G67330 "AT1G67330" [Arabido	0.699	0.759	0.497	2.9e-55
TAIR|locus:2010449	289	AT1G27930 "AT1G27930" [Arabido	0.664	0.726	0.504	8.9e-54
TAIR|locus:2155518	317	IRX15-L "AT5G67210" [Arabidops	0.696	0.694	0.409	9.6e-41
TAIR|locus:2074815	322	IRX15 "AT3G50220" [Arabidopsis	0.689	0.677	0.414	1.2e-40
TAIR|locus:2047158	329	AT2G15440 "AT2G15440" [Arabido	0.680	0.653	0.375	1.4e-39
TAIR|locus:2117378	315	AT4G24910 "AT4G24910" [Arabido	0.623	0.625	0.354	1.6e-24

TAIR|locus:2012728 GXMT1 "glucuronoxylan methyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 888 (317.7 bits), Expect = 5.9e-89, P = 5.9e-89
 Identities = 159/224 (70%), Positives = 192/224 (85%)

Query:    92 KTPPSLANALVHYATTNITPQQTVKEISVSLRVLAQKSPCNFLVFGLGYDSLMWSALNHG 151
             K P SL++ALVHY T+N+TPQQT  E+SVS RVL +KSPCNFLVFGLG+DSLMW++LNHG
Sbjct:    68 KMPLSLSDALVHYVTSNVTPQQTFDEVSVSKRVLDKKSPCNFLVFGLGHDSLMWASLNHG 127

Query:   152 GRTLFLEEDKSWINQIKEKFPTLESYHVEYDTKVNEADELMNAVGSDEECRVVTDPRFSK 211
             GRTLF+EED++WI  + +KFP LESYHV YDTKV ++D+LM  +G  EECR V+DPR SK
Sbjct:   128 GRTLFIEEDQAWIAIVTKKFPNLESYHVVYDTKVKDSDKLME-LGRSEECRSVSDPRNSK 186

Query:   212 CRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGRMTAIYTAGLMARNRESGETDVFVHD 271
             C LALK FP++ Y+ +WDLIMVDAPTGYHE APGRM+AIYTAGL+ARNRE GETDVFVHD
Sbjct:   187 CDLALKDFPADFYETKWDLIMVDAPTGYHEEAPGRMSAIYTAGLLARNREDGETDVFVHD 246

Query:   272 VDRVVEDKFSKAFLCEGYLKEQEGRIRHFVVPSHRTRSARPFCP 315
             V+R VED+FS  FLC+GY++EQ GR+RHF +PSHR R+ RPFCP
Sbjct:   247 VNRPVEDEFSATFLCKGYMREQNGRLRHFTIPSHRARAGRPFCP 290

GO:0005739 "mitochondrion" evidence=ISM

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005976 "polysaccharide metabolic process" evidence=IDA

GO:0009808 "lignin metabolic process" evidence=IMP

GO:0030775 "glucuronoxylan 4-O-methyltransferase activity" evidence=IDA

GO:0045491 "xylan metabolic process" evidence=IMP

TAIR|locus:2012350 GXM3 "glucuronoxylan methyltransferase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 881 (315.2 bits), Expect = 3.2e-88, P = 3.2e-88
 Identities = 161/229 (70%), Positives = 196/229 (85%)

Query:    92 KTPPSLANALVHYATTNITPQQTVKEISVSLRVLAQKSPCNFLVFGLGYDSLMWSALNHG 151
             K P SLA AL+HY+T+ ITPQQT+KEI+VS RVL +KSPCNFLVFGLG+DSLMWS+LN+G
Sbjct:    55 KLPRSLAQALIHYSTSVITPQQTLKEIAVSSRVLGKKSPCNFLVFGLGHDSLMWSSLNYG 114

Query:   152 GRTLFLEEDKSWINQIKEKFPTLESYHVEYDTKVNEADELMNAVGSDEECRVVTDPRFSK 211
             GRT+FLEED++WI QIK +FP LESYHV YD+KVN+AD L+  VG   EC  + DPR+S 
Sbjct:   115 GRTVFLEEDEAWIKQIKRRFPMLESYHVTYDSKVNQADNLIE-VGKGPECTAIGDPRYSM 173

Query:   212 CRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGRMTAIYTAGLMARNR-ESGETDVFVH 270
             C+LALKG P+E+Y+  WDLIMVDAPTGY++ APGRMTAIYTAG+MARNR + GETDVFVH
Sbjct:   174 CQLALKGLPAEIYETGWDLIMVDAPTGYYDEAPGRMTAIYTAGMMARNRKQGGETDVFVH 233

Query:   271 DVDRVVEDKFSKAFLCEGYLKEQEGRIRHFVVPSHR----TRSARPFCP 315
             DV+R +EDKFSKAFLCEGY+K+QEGR+RHF++PS+R    + S RPFCP
Sbjct:   234 DVNREIEDKFSKAFLCEGYMKKQEGRLRHFIIPSYRDGSESESNRPFCP 282

GO:0005576 "extracellular region" evidence=ISM

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0030775 "glucuronoxylan 4-O-methyltransferase activity" evidence=IDA

GO:0045491 "xylan metabolic process" evidence=IMP

TAIR|locus:2140518 GXM2 "glucuronoxylan methyltransferase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 853 (305.3 bits), Expect = 3.0e-85, P = 3.0e-85
 Identities = 153/226 (67%), Positives = 191/226 (84%)

Query:    92 KTPPSLANALVHYATTNITPQQTVKEISVSLRVLAQKSPCNFLVFGLGYDSLMWSALNHG 151
             K P SL++ALVHY T+ ITPQQT  E+SVS RVL +KSPCNFLVFGLG+DSLMW++LNHG
Sbjct:    60 KLPTSLSDALVHYVTSEITPQQTFDEVSVSKRVLDKKSPCNFLVFGLGHDSLMWASLNHG 119

Query:   152 GRTLFLEEDKSWINQIKEKFPTLESYHVEYDTKVNEADELMNAVGSDEECRVVTDPRFSK 211
             GRTLFLEED++WI  + +KFP LESYHV YDTKV ++++LM  +   E+C+ V+DPR SK
Sbjct:   120 GRTLFLEEDEAWIETVTKKFPNLESYHVVYDTKVKDSNKLME-LKRTEDCKAVSDPRDSK 178

Query:   212 CRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGRMTAIYTAGLMARNR-ESGETDVFVH 270
             C L+LKGFP++VY+ +WD+IMVDAPTGYH+ APGRM+AIYTAGL+ARNR + GETDVFVH
Sbjct:   179 CALSLKGFPADVYETQWDVIMVDAPTGYHDEAPGRMSAIYTAGLLARNRYDGGETDVFVH 238

Query:   271 DVDRVVEDKFSKAFLCEGYLKEQEGRIRHFVVPSHRTRSARPFCPS 316
             D++R VED+FS AFLC GY+KEQ+GR+RHF +PSHR     PFCP+
Sbjct:   239 DINRPVEDEFSVAFLCGGYMKEQQGRLRHFNIPSHRASFGTPFCPA 284

GO:0005576 "extracellular region" evidence=ISM

GO:0010054 "trichoblast differentiation" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0030775 "glucuronoxylan 4-O-methyltransferase activity" evidence=IDA

GO:0045491 "xylan metabolic process" evidence=IMP

TAIR|locus:2013066 AT1G71690 "AT1G71690" [Arabidopsis thaliana (taxid:3702)]

 Score = 811 (290.5 bits), Expect = 8.5e-81, P = 8.5e-81
 Identities = 155/229 (67%), Positives = 182/229 (79%)

Query:    92 KTPPSLANALVHYATTNITPQQTVKEISVSLRVLAQKSPCNFLVFGLGYDSLMWSALNHG 151
             K PPSLA+ALVHYA++N+TPQQT+ EISV+ + L +KSPCNFLVFGLG+DSLMW+ LNHG
Sbjct:    67 KIPPSLADALVHYASSNVTPQQTLSEISVTKKELEKKSPCNFLVFGLGHDSLMWATLNHG 126

Query:   152 GRTLFLEEDKSWINQIKEKFPTLESYHVEYDTKVNEADELMNAVGSDEECR-VVTDPRFS 210
             GRT+FL+ED+SWI+QI EKFP+LESYHV Y TKV +A+ LM A    EECR V TD R S
Sbjct:   127 GRTIFLDEDESWIHQIAEKFPSLESYHVRYKTKVRDAEALMAATKDREECRRVSTDLRVS 186

Query:   211 KCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGRMTAIYTAGLMARNRESGE--TDVF 268
              C LALKG P  VY+ EWDLIMVDAPTG+HE APGRM+AIYTAG++AR R+  E  T VF
Sbjct:   187 TCELALKGLPEVVYETEWDLIMVDAPTGFHEEAPGRMSAIYTAGMIARRRKDEEETTAVF 246

Query:   269 VHDVDRVVEDKFSKAFLCEGYLKEQEGRIRHFVVPSHRTR--SARPFCP 315
             VHDVDR VED+FS  FLC  Y+ +QEGR+RHF VPSHR    S   FCP
Sbjct:   247 VHDVDRKVEDEFSMEFLCRDYMTKQEGRLRHFTVPSHRNYGVSGVKFCP 295

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2019519 AT1G67330 "AT1G67330" [Arabidopsis thaliana (taxid:3702)]

 Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
 Identities = 114/229 (49%), Positives = 154/229 (67%)

Query:    93 TPPSLANALVHYATTNITPQQTVKEISVSLRVLAQKSPCNFLVFGLGYDSLMWSALNHGG 152
             TP  L  ++VHYAT++  PQQ+ +EIS+SL VL ++ PCNFLVFGLG DSLMW++LN GG
Sbjct:    64 TPIQL-QSIVHYATSHTVPQQSFEEISISLNVLKERLPCNFLVFGLGRDSLMWASLNPGG 122

Query:   153 RTLFLEEDKSWINQIKEKFPTLESYHVEYDTKVNEADELMNAVGSDEECRVVTD-P-RFS 210
              T+FLEED  WI  + +  P+L ++HV+Y T ++EA  L++   ++  C      P R++
Sbjct:   123 TTVFLEEDPEWIEAVLKDAPSLRAHHVQYRTHLSEAGRLLSTYKNEPMCLPAKAFPIRYN 182

Query:   211 -KCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGRMTAIYTAGLMARNRES-GETDVF 268
              KC LAL   P E YD EWDLIMVDAP GY   APGRM AI+++ +MARNR+  G T VF
Sbjct:   183 EKCPLALTSLPDEFYDTEWDLIMVDAPKGYFPEAPGRMAAIFSSAIMARNRKGDGTTHVF 242

Query:   269 VHDVDRVVEDKFSKAFLCEGYLKEQEGRIRHFVVPSHRTRSARP---FC 314
             +HDV+R VE+ F+  FLCE Y     GR+ HF +P+    + +P   FC
Sbjct:   243 LHDVNRKVENAFANEFLCEKYKVNSVGRLWHFEIPNAANMTDQPGDRFC 291

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2010449 AT1G27930 "AT1G27930" [Arabidopsis thaliana (taxid:3702)]

 Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
 Identities = 108/214 (50%), Positives = 145/214 (67%)

Query:    93 TPPSLANALVHYATTNITPQQTVKEISVSLRVLAQKSPCNFLVFGLGYDSLMWSALNHGG 152
             TP  L  A+VHYAT+N+ PQQ + EIS+S  +L + +P NFLVFGLG DSLMW++LN  G
Sbjct:    61 TPIQL-QAIVHYATSNVVPQQNLAEISISFNILKKLAPANFLVFGLGRDSLMWASLNPRG 119

Query:   153 RTLFLEEDKSWINQIKEKFPTLESYHVEYDTKVNEADELMNAVGSDEECRVVTDP-RFS- 210
             +TLFLEED  W  ++ +  P L ++HV Y T++ +AD L+ +  ++ +C       R + 
Sbjct:   120 KTLFLEEDLEWFQKVTKDSPFLRAHHVRYRTQLQQADSLLRSYKTEPKCFPAKSYLRGNE 179

Query:   211 KCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGRMTAIYTAGLMARNRES-GETDVFV 269
             KC+LAL G P E YD EWDL+MVDAP GY   APGRM AI++A +MARNR+  G T VF+
Sbjct:   180 KCKLALTGLPDEFYDTEWDLLMVDAPKGYFAEAPGRMAAIFSAAVMARNRKKPGVTHVFL 239

Query:   270 HDVDRVVEDKFSKAFLCEGYLKEQEGRIRHFVVP 303
             HDV+R VE  F++ FLC  Y     GR+ HF +P
Sbjct:   240 HDVNRRVEKTFAEEFLCRKYRVNAAGRLWHFAIP 273

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2155518 IRX15-L "AT5G67210" [Arabidopsis thaliana (taxid:3702)]

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 93/227 (40%), Positives = 138/227 (60%)

Query:    94 PPSLANALVHYAT-TNITPQQTVKEISVSLRVLAQKSP-CNFLVFGLGYDSLMWSALNHG 151
             P +  NA++HYA+ +N +   +  E+     VL + SP CN LVFGL +++L+W +LNH 
Sbjct:    78 PTTAINAMLHYASRSNDSYHMSYGEMKSISDVLRRCSPPCNLLVFGLTHETLLWKSLNHN 137

Query:   152 GRTLFLEEDKSWINQIKEKFPTLESYHVEYDTKVNEADELMNAV--GSDEECRVVTDPRF 209
             GRT+F+EE++ +    +E  P +E + V+Y TK  EA EL++AV   +  ECR V +  F
Sbjct:   138 GRTVFIEENRYYAAYFEEIHPEIEVFDVQYTTKAREARELVSAVKEAARNECRPVQNLLF 197

Query:   210 SKCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGRMTAIYTAGLMARNRESG--ETDV 267
             S C+L L   P+ VYDV+WD+I+VD P G     PGRM++I+TA ++AR+++ G  +T V
Sbjct:   198 SDCKLGLNDLPNHVYDVDWDVILVDGPRGDGGDVPGRMSSIFTAAVLARSKKGGNPKTHV 257

Query:   268 FVHDVDRVVEDKFSKAFLCEGYLKEQEGRIRHFVVPSHRTRSARPFC 314
             FVHD  R VE      FLC   L E    + H+V+      S + FC
Sbjct:   258 FVHDYYRDVERLCGDEFLCRENLVESNDLLAHYVLEKMDKNSTQ-FC 303

GO:0003674 "molecular_function" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

GO:0045492 "xylan biosynthetic process" evidence=RCA;IMP

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

TAIR|locus:2074815 IRX15 "AT3G50220" [Arabidopsis thaliana (taxid:3702)]

 Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 95/229 (41%), Positives = 137/229 (59%)

Query:    94 PPSLANALVHYAT-TNITPQQT---VKEISVSLRVLAQKSPCNFLVFGLGYDSLMWSALN 149
             P S  NAL+HYA+ +N +   +   +K IS  LR  A   PCN LVFGL +++L+W +LN
Sbjct:    85 PTSAINALLHYASRSNDSFHMSYGEMKSISDVLRRCAP--PCNLLVFGLTHETLLWKSLN 142

Query:   150 HGGRTLFLEEDKSWINQIKEKFPTLESYHVEYDTKVNEADELMNAV--GSDEECRVVTDP 207
             H GRT+F+EE++ +    +E  P ++ + V+Y TK +EA EL+ A    +  ECR V + 
Sbjct:   143 HNGRTVFIEENRYYAAYFEEIHPEIDVFDVQYTTKAHEAGELVTAAKEAAGNECRPVQNL 202

Query:   208 RFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGRMTAIYTAGLMARNRESG--ET 265
              FS C+L L   P+ VYDV+WD+I VD P G     PGRM++I+TA ++AR+++ G  +T
Sbjct:   203 LFSDCKLGLNDLPNHVYDVDWDVIFVDGPRGDAHEGPGRMSSIFTAAVLARSKKGGTPKT 262

Query:   266 DVFVHDVDRVVEDKFSKAFLCEGYLKEQEGRIRHFVVPSHRTRSARPFC 314
              VFVHD  R VE      FLC   L E    + H+V+      S + FC
Sbjct:   263 HVFVHDYYRDVERLCGDEFLCRENLVESNDLLAHYVLDKMDKNSTK-FC 310

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

GO:0045492 "xylan biosynthetic process" evidence=RCA;IMP

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

TAIR|locus:2047158 AT2G15440 "AT2G15440" [Arabidopsis thaliana (taxid:3702)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 84/224 (37%), Positives = 140/224 (62%)

Query:    94 PPSLANALVHYATTNITPQQTVK--EISVSLRVLAQKSP-CNFLVFGLGYDSLMWSALNH 150
             PP LA AL+HY T++  P  ++   E+S    ++    P CN L+FGL ++SL+W ++N 
Sbjct:    76 PPVLA-ALLHY-TSSSPPNTSMSFLELSTISNIIHSHGPACNLLIFGLTHESLLWRSINF 133

Query:   151 GGRTLFLEEDKSWINQIKEKFPTLESYHVEYDTKVNEADELMNAVGSDEECRVVTDPRFS 210
              GRT+F++E    +++ ++  P +E+Y V Y TKV++A +L+    +  ECR V +  FS
Sbjct:   134 QGRTVFVDESPYSVSKFEQSNPGVEAYEVVYSTKVSQAKKLLGYYKTRPECRPVQNLLFS 193

Query:   211 KCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGRMTAIYTAGLMARNRESG----ETD 266
              C+L +   P+ VY+++WD+I++D P GY   +PGRM  I+T+ ++A++++ G    +TD
Sbjct:   194 DCKLGINDLPNFVYEIDWDVILIDGPRGYASDSPGRMAPIFTSAVLAKSKDFGTKTKKTD 253

Query:   267 VFVHDVDRVVEDKFSKAFLCEGYLKEQEGRIRHFVVPSHRTRSA 310
             V VH+  R +E  +S+ FLCE  L E  G + HFVV +   R +
Sbjct:   254 VLVHEFGRKIERVYSEEFLCEENLIEVVGDLGHFVVAAAEERES 297

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2117378 AT4G24910 "AT4G24910" [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 73/206 (35%), Positives = 107/206 (51%)

Query:   116 KEISVSLRVLAQKSPCNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIK-EKFPT- 173
             KE+ +    + ++SPCN LVFG     LM S++N  G T+ LE++ + I   K E  P  
Sbjct:   104 KELKLLSDTVTRRSPCNILVFGFAPQYLMLSSINTRGITVILEDEPAKIMIPKAEVNPNN 163

Query:   174 LESYHVEY-DTKVNEADELMNAVGSDEECRVVTDPRF---SKCRLALKGFPSEVYDVEWD 229
                Y ++Y   +V  A  L+    ++  C    + +    S C+L L+  P +V++ +WD
Sbjct:   164 TRIYSLKYHQMEVRNAYNLLQHARANPACAPNMNNQHQGSSDCKLELRDLPQQVHNTKWD 223

Query:   230 LIMVDAPTGYHEAAPGRMTAIYTAGLMARNRESGET-DVFVHDVDRVVEDKFSKAFLCEG 288
             +I+VD P G     PGRM +IYTA ++AR   S  T DVFVHDV R  E   S  FLC+ 
Sbjct:   224 VIVVDGPRGDDLETPGRMGSIYTAAVLARKGSSNSTTDVFVHDVHRTAEKWLSWEFLCQE 283

Query:   289 YLKEQEGRIRHFVVPSHRTRSARPFC 314
              L   +G    F +   R  +A  FC
Sbjct:   284 NLVSAKGTFWKFRIK--RQSNASRFC 307


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.133   0.401    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      316       251   0.00081  114 3  11 22  0.46    33
                                                     32  0.47    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  616 (65 KB)
  Total size of DFA:  211 KB (2118 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.70u 0.11s 21.81t   Elapsed:  00:00:01
  Total cpu time:  21.70u 0.11s 21.81t   Elapsed:  00:00:01
  Start:  Sat May 11 06:58:00 2013   End:  Sat May 11 06:58:01 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LQ32	GXM3_ARATH	2, ., 1, ., 1, ., 1, 1, 2	0.6666	0.7689	0.8181	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00021863001 SubName- Full=Chromosome chr18 scaffold_24, whole genome shotgun sequence; (300 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	316
TIGR01627	225	TIGR01627, A_thal_3515, uncharacterized plant-spec	1e-107
pfam04669	134	pfam04669, Polysacc_synt_4, Polysaccharide biosynt	8e-37

>gnl|CDD|130688 TIGR01627, A_thal_3515, uncharacterized plant-specific domain TIGR01627

 Score =  311 bits (799), Expect = e-107
 Identities = 99/226 (43%), Positives = 134/226 (59%), Gaps = 3/226 (1%)

Query: 91  TKTPPSLANALVHYATTNITPQQTVKEISVSLRVLAQKSPCNFLVFGLGYDSLMWSALNH 150
           T  P S A+AL HY  +N       KE+ +   VL ++SPCN LVFGL +  LMWS+LNH
Sbjct: 1   TTFPLSPADALQHYRASNGPTALMEKELKLLSDVLTRRSPCNILVFGLAHQYLMWSSLNH 60

Query: 151 GGRTLFLEEDKSWINQIKEKFPTLESYHVEYDTKVNEADELMNAVGSDEECRVVTDPR-F 209
            GRT+F+EE+K  I + +   P    Y V+Y TKV  A  L+    ++ ECR V + +  
Sbjct: 61  RGRTVFIEEEKIMIAKAEVNPPNTRIYSVKYHTKVRNAYNLLQHARANPECRPVMNHQGS 120

Query: 210 SKCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGRMTAIYTAGLMARNRESG-ETDVF 268
           S C+L L+  P +VY+ +WD+I+VD P G     PGRM++IYTA ++AR   SG  TDVF
Sbjct: 121 SDCKLELRDLPQQVYNTKWDVIVVDGPRGDDLETPGRMSSIYTAAVLARKGSSGSTTDVF 180

Query: 269 VHDVDRVVEDKFSKAFLCEGYLKEQEGRIRHFVVPSHRTRSARPFC 314
           VHDV R VE   S  FLC+  L E  G + HF +      ++R FC
Sbjct: 181 VHDVHRTVEKWLSWEFLCQENLVEANGTLWHFRIKRQS-NASRAFC 225

This model represents an uncharacterized domain found in both Arabidopsis thaliana (at least 10 copies) and Oryza sativa. Most member proteins have only a short stretch of sequence N-terminal to this domain, but one has a long N-terminal extension that includes a protein kinase domain (pfam00069). Length = 225

>gnl|CDD|218202 pfam04669, Polysacc_synt_4, Polysaccharide biosynthesis

 Score =  128 bits (323), Expect = 8e-37
 Identities = 61/191 (31%), Positives = 78/191 (40%), Gaps = 65/191 (34%)

Query: 117 EISVSLRVLAQKSP-CNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEKFPTLE 175
           E+  +++ +    P CN LVFGLG  SL  +ALN G              + ++ FP LE
Sbjct: 2   EMQWAVKAVEHAEPYCNLLVFGLGPSSLRLTALNDG-----------IYEKFRKAFPELE 50

Query: 176 SYHVEYDTKVNEADELMNAVGSDEECRVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDA 235
           +YHV Y TKV +ADEL                             S  Y  +W  I VDA
Sbjct: 51  AYHVAYRTKVLDADELK----------------------------SAAYKEKW-RIFVDA 81

Query: 236 PTGYHEAAPGRMTAIYTAGLMARNRESG----ETDVFVHDVDRVVEDKFSKAFLCEGYLK 291
           P GY E         Y AG +AR+  S     E  VFVH V           FLC    +
Sbjct: 82  PEGYVED--------YNAGTLARSDASKGYTPENTVFVHRV----------QFLCIEIAR 123

Query: 292 EQEGR--IRHF 300
            +EG   + HF
Sbjct: 124 NREGLNDLVHF 134

This family of proteins plays a role in xylan biosynthesis in plant cell walls. Its precise role in xylan biosynthesis is unknown. Its function in other organisms is unknown. Length = 134

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	316
TIGR01627	225	A_thal_3515 uncharacterized plant-specific domain	100.0
PF04669	190	Polysacc_synt_4: Polysaccharide biosynthesis; Inte	100.0
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	95.83
PLN02823	336	spermine synthase	94.73
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	94.48
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	94.42
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	93.69
PRK01581	374	speE spermidine synthase; Validated	93.53
PLN02476	278	O-methyltransferase	93.43
PRK00811	283	spermidine synthase; Provisional	92.44
PRK03612	521	spermidine synthase; Provisional	92.09
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	91.48
PRK04457	262	spermidine synthase; Provisional	88.93
PLN02366	308	spermidine synthase	88.68
PLN02589	247	caffeoyl-CoA O-methyltransferase	87.25

>TIGR01627 A_thal_3515 uncharacterized plant-specific domain TIGR01627

Probab=100.00  E-value=9.8e-122  Score=831.72  Aligned_cols=223  Identities=45%  Similarity=0.770  Sum_probs=216.4

Q ss_pred             cCCChhHHHHHHHHHhCCCCccCcHHHHHHHHHHhhhcCCccEEEeccCchhHhHhhhccCCceeEeccChhHHHHHHhh
Q 021206           91 TKTPPSLANALVHYATTNITPQQTVKEISVSLRVLAQKSPCNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEK  170 (316)
Q Consensus        91 ~~lP~~v~~AlvHYAtsn~tpqqt~~Ei~~~~~VL~~raPCNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~  170 (316)
                      +++|++|++|||||||||+|||||.+||+++++||++||||||||||||||||||+||||||||||||||++||++++++
T Consensus         1 t~~p~~~a~AlvhYatsn~t~q~s~~Ei~~~~~VL~~raPCN~LVFGLghdsllW~aLN~gGrTvFLEEd~~~i~~~~~~   80 (225)
T TIGR01627         1 TTFPLSPADALQHYRASNGPTALMEKELKLLSDVLTRRSPCNILVFGLAHQYLMWSSLNHRGRTVFIEEEKIMIAKAEVN   80 (225)
T ss_pred             CCCchhHHHHHHHHHhcCCCcccCHHHHHHHHHHHHhcCCceEEEeccCcchHHHHHhcCCCeeEEecCCHHHHHHHhhc
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeEEeeeccchhhHHHHHHHcCCCCCCCCCCC-CCcccccccccCCCcccccccccEEEEeCCCCCCCCCCCchhH
Q 021206          171 FPTLESYHVEYDTKVNEADELMNAVGSDEECRVVTD-PRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGRMTA  249 (316)
Q Consensus       171 ~P~leay~V~Y~T~v~eA~~LL~~~r~~~~C~pv~~-l~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~~eaPGRM~A  249 (316)
                      ||+||||+|+|+|+++||++||+.+|++++|+|+|+ +++|+|||||+|||+||||++|||||||||+||+|||||||+|
T Consensus        81 ~p~leay~V~Y~t~~~~a~~LL~~~~~~~~C~p~~~~~~~s~C~Lal~~LP~~vYe~~WDvImVDgP~Gy~~eaPGRM~a  160 (225)
T TIGR01627        81 PPNTRIYSVKYHTKVRNAYNLLQHARANPECRPVMNHQGSSDCKLELRDLPQQVYNTKWDVIVVDGPRGDDLETPGRMSS  160 (225)
T ss_pred             CCcceEEEEEeehhhhhHHHHHHHhccCCcccCCCCccccCcCccccccCCHHHhcccCcEEEEeCCCCCCCCCCcchhh
Confidence            999999999999999999999998888899999986 4599999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCC-CceEEEecCChhHHHHHHHhhcccccccccccceeeeEecCCCCCCCCCCC
Q 021206          250 IYTAGLMARNRESG-ETDVFVHDVDRVVEDKFSKAFLCEGYLKEQEGRIRHFVVPSHRTRSARPFC  314 (316)
Q Consensus       250 IyTAavmARar~~g-~TdVfVHDVdR~VE~~fs~EFLC~~nLv~~~GrLwHF~Ip~~~~~~~~~FC  314 (316)
                      |||||||||+|++| +||||||||||+|||+|||||||++|||+++||||||+||+|++.+ ++||
T Consensus       161 IyTAav~AR~r~~g~~TdVfVHDvdR~VE~~fs~eFLC~~~lv~~~grL~HF~Ip~~~~~~-~~FC  225 (225)
T TIGR01627       161 IYTAAVLARKGSSGSTTDVFVHDVHRTVEKWLSWEFLCQENLVEANGTLWHFRIKRQSNAS-RAFC  225 (225)
T ss_pred             HHHHHHHHHhccCCCCceEEEecCCcHHHHHHHHHhcchHHHHhccCceeeEEecCCcCCC-CCCC
Confidence            99999999999875 7999999999999999999999999999999999999999998755 6899

This model represents an uncharacterized domain found in both Arabidopsis thaliana (at least 10 copies) and Oryza sativa. Most member proteins have only a short stretch of sequence N-terminal to this domain, but one has a long N-terminal extension that includes a protein kinase domain (pfam00069).

>PF04669 Polysacc_synt_4: Polysaccharide biosynthesis; InterPro: IPR021148 This is a eukaryotic family of uncharacterised proteins

Probab=100.00  E-value=7.6e-87  Score=593.49  Aligned_cols=184  Identities=59%  Similarity=1.069  Sum_probs=106.6

Q ss_pred             HHHHHHHHHhhhcCC-ccEEEeccCchhHhHhhhccCCceeEeccChhHHHHHHhhCCCceeEEeeeccchhhHHHHHHH
Q 021206          116 KEISVSLRVLAQKSP-CNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEKFPTLESYHVEYDTKVNEADELMNA  194 (316)
Q Consensus       116 ~Ei~~~~~VL~~raP-CNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~~P~leay~V~Y~T~v~eA~~LL~~  194 (316)
                      .||+.+++||++++| |||||||||||+|||+++||||||||||||++|+++++++||++++|+|+|+|++.++++||+.
T Consensus         1 ~E~~~a~~~l~~~~p~cNlLvfgl~~~sl~wt~ln~~GrTvFlee~~~~~~~~~~~fP~l~~~~v~y~t~~~~a~~Ll~~   80 (190)
T PF04669_consen    1 IEIAWAAKVLQHREPYCNLLVFGLGPDSLLWTSLNDGGRTVFLEEDPAWYSSFRKRFPDLEAYHVRYRTKVIDADELLSK   80 (190)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHS--TTS--SSTTHHH-----------HHHHHHHH-TTT----SHHHHHB--STTTSSH
T ss_pred             CcHHHHHHHHHHhCCCceEEEEeCCCccccchhcCcCcccchhhHHHHHHHHHHHHCcCCcccCcccccccCCHHHHhCc
Confidence            599999999999998 9999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCCCCCCCCCCCCCcccccccccCCCcccccccccEEEEeCCCCCCCCCCCchhHHHHHHHHHhhcCCC---CceEEEec
Q 021206          195 VGSDEECRVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGRMTAIYTAGLMARNRESG---ETDVFVHD  271 (316)
Q Consensus       195 ~r~~~~C~pv~~l~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~~eaPGRM~AIyTAavmARar~~g---~TdVfVHD  271 (316)
                      +|. ++|+|+|++++|+|||||+|||++||+++|||||||||+||+|+|||||+||||||||||+|++|   +|||||||
T Consensus        81 ~~~-~~C~~~~~~~~s~C~lal~~LP~~vy~~~WDvi~vd~p~g~~~daPGRM~aIytag~LaR~~~~~~~t~t~VfVhd  159 (190)
T PF04669_consen   81 ARS-PECRPVQNLRFSECKLALNDLPNEVYKEKWDVIFVDAPRGYVPDAPGRMAAIYTAGVLARARASGGYTETDVFVHD  159 (190)
T ss_dssp             H----------------------------HHHHH-HHHHHHHTTT-S---------TTS-EEEESBTTS-S-TTEEEE-H
T ss_pred             ccc-ccccccccccccccccccccccchhhhhhHHHHHHHcCCCCCCccchhhhhhccHHHHhhccCCCCCCCCEEEEEc
Confidence            888 99999999999999999999999999999999999999999999999999999999999999864   36999999


Q ss_pred             CChhHHHHHHHhhcccccccccccc--eeee
Q 021206          272 VDRVVEDKFSKAFLCEGYLKEQEGR--IRHF  300 (316)
Q Consensus       272 VdR~VE~~fs~EFLC~~nLv~~~Gr--LwHF  300 (316)
                      |||+|||+||+||||++|+++++|+  ||||
T Consensus       160 v~R~vE~~~s~eFLc~e~l~~~~G~~~l~hF  190 (190)
T PF04669_consen  160 VDRPVEKWFSEEFLCIEILRNREGRNDLWHF  190 (190)
T ss_dssp             H----------HHHHHHHHHHHTTTTGGG--
T ss_pred             ccccccchhHHHHHHHHHHHhCCCchhhccC
Confidence            9999999999999999999999999  9999

; PDB: 2JYN_A.

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=95.83  E-value=0.09  Score=50.10  Aligned_cols=155  Identities=21%  Similarity=0.314  Sum_probs=113.4

Q ss_pred             HHHHHHHHHhhhcCCccEEEeccCchhHhHhhhccC--CceeEeccChhHHHHHHhhCCCce--eEEeeeccchhhHHHH
Q 021206          116 KEISVSLRVLAQKSPCNFLVFGLGYDSLMWSALNHG--GRTLFLEEDKSWINQIKEKFPTLE--SYHVEYDTKVNEADEL  191 (316)
Q Consensus       116 ~Ei~~~~~VL~~raPCNfLVFGLg~dslmW~aLN~g--GrTvFLEEd~~~i~~v~~~~P~le--ay~V~Y~T~v~eA~~L  191 (316)
                      -|.-+....+.+..|=+.||-|+|--+.++..+-|.  -+-+.+|=|+..|+-.++-.|...  ++|=+-.-.+.++.+.
T Consensus        63 hEml~h~~~~ah~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~  142 (282)
T COG0421          63 HEMLAHVPLLAHPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEF  142 (282)
T ss_pred             HHHHHhchhhhCCCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHH
Confidence            344555556677667799999999999999999998  699999999999999888888765  4433334444677777


Q ss_pred             HHHcCCCCCCCCCCCCCcccccccccCCCcccccccccEEEEeCCCCCCCCCCCchhHHHHHHHHHhhc----CCC----
Q 021206          192 MNAVGSDEECRVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGRMTAIYTAGLMARNR----ESG----  263 (316)
Q Consensus       192 L~~~r~~~~C~pv~~l~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~~eaPGRM~AIyTAavmARar----~~g----  263 (316)
                      |+                        +-+     -++|||++|.--   |+.||  .+.||.-..--.+    .+|    
T Consensus       143 v~------------------------~~~-----~~fDvIi~D~td---p~gp~--~~Lft~eFy~~~~~~L~~~Gi~v~  188 (282)
T COG0421         143 LR------------------------DCE-----EKFDVIIVDSTD---PVGPA--EALFTEEFYEGCRRALKEDGIFVA  188 (282)
T ss_pred             HH------------------------hCC-----CcCCEEEEcCCC---CCCcc--cccCCHHHHHHHHHhcCCCcEEEE
Confidence            76                        111     169999999766   34443  4566665543333    234    


Q ss_pred             -CceEEEe-----cCChhHHHHHHHhhcccccccccccceeeeEecC
Q 021206          264 -ETDVFVH-----DVDRVVEDKFSKAFLCEGYLKEQEGRIRHFVVPS  304 (316)
Q Consensus       264 -~TdVfVH-----DVdR~VE~~fs~EFLC~~nLv~~~GrLwHF~Ip~  304 (316)
                       .-+-|.|     +..|.++++|+..-...-.+-.-.+..|-|.+.+
T Consensus       189 q~~~~~~~~~~~~~~~~~~~~vf~~~~~~~~~ipt~~~g~~~f~~~s  235 (282)
T COG0421         189 QAGSPFLQDEEIALAYRNVSRVFSIVPPYVAPIPTYPSGFWGFIVAS  235 (282)
T ss_pred             ecCCcccchHHHHHHHHHHHhhccccccceeccceecCCceEEEEee
Confidence             2235556     5889999999998888888888888999999977

>PLN02823 spermine synthase

Probab=94.73  E-value=0.29  Score=47.55  Aligned_cols=102  Identities=17%  Similarity=0.320  Sum_probs=67.4

Q ss_pred             HhhhcCCccEEEeccCchhHhHhhhccC--CceeEeccChhHHHHHHhhCCCce-eE-EeeeccchhhHHHHHHHcCCCC
Q 021206          124 VLAQKSPCNFLVFGLGYDSLMWSALNHG--GRTLFLEEDKSWINQIKEKFPTLE-SY-HVEYDTKVNEADELMNAVGSDE  199 (316)
Q Consensus       124 VL~~raPCNfLVFGLg~dslmW~aLN~g--GrTvFLEEd~~~i~~v~~~~P~le-ay-~V~Y~T~v~eA~~LL~~~r~~~  199 (316)
                      .+....|-++||.|+|--++....+.|.  .+-+.+|=|+.-++-+++-+|... ++ +=+-+-.+.||.+.|+..    
T Consensus        98 l~~~~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~----  173 (336)
T PLN02823         98 LLHHPNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR----  173 (336)
T ss_pred             HhhCCCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC----
Confidence            3445679999999999888887777764  467899999999998888776421 11 112223345666666410    


Q ss_pred             CCCCCCCCCcccccccccCCCcccccccccEEEEeCCCCCCCCCCCchhHHHHHHHHH
Q 021206          200 ECRVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGRMTAIYTAGLMA  257 (316)
Q Consensus       200 ~C~pv~~l~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~~eaPGRM~AIyTAavmA  257 (316)
                                               +-+||||++|.+.   |...|-....||.-.+.
T Consensus       174 -------------------------~~~yDvIi~D~~d---p~~~~~~~~Lyt~eF~~  203 (336)
T PLN02823        174 -------------------------DEKFDVIIGDLAD---PVEGGPCYQLYTKSFYE  203 (336)
T ss_pred             -------------------------CCCccEEEecCCC---ccccCcchhhccHHHHH
Confidence                                     1259999999865   33333335678866544

>TIGR00417 speE spermidine synthase

Probab=94.48  E-value=0.17  Score=46.57  Aligned_cols=51  Identities=24%  Similarity=0.432  Sum_probs=40.0

Q ss_pred             HhhhcCCccEEEeccCchhHhHhhhccC--CceeEeccChhHHHHHHhhCCCc
Q 021206          124 VLAQKSPCNFLVFGLGYDSLMWSALNHG--GRTLFLEEDKSWINQIKEKFPTL  174 (316)
Q Consensus       124 VL~~raPCNfLVFGLg~dslmW~aLN~g--GrTvFLEEd~~~i~~v~~~~P~l  174 (316)
                      .+....|=+.|+.|.|-..+....+.++  .+.+.+|-|+.-++..++..|.+
T Consensus        67 l~~~~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~  119 (270)
T TIGR00417        67 LFTHPNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSL  119 (270)
T ss_pred             hhcCCCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhh
Confidence            3445567799999999988887777775  57889999999998888766543

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=94.42  E-value=0.28  Score=44.61  Aligned_cols=118  Identities=19%  Similarity=0.180  Sum_probs=74.8

Q ss_pred             ChhHHHHHHHHHhCC--CCccC--cHHHHHHHHHHhhhcCCccEEEecc--CchhHhHhh-hccCCceeEeccChhHHHH
Q 021206           94 PPSLANALVHYATTN--ITPQQ--TVKEISVSLRVLAQKSPCNFLVFGL--GYDSLMWSA-LNHGGRTLFLEEDKSWINQ  166 (316)
Q Consensus        94 P~~v~~AlvHYAtsn--~tpqq--t~~Ei~~~~~VL~~raPCNfLVFGL--g~dslmW~a-LN~gGrTvFLEEd~~~i~~  166 (316)
                      ...+++.+.+||..+  ..++|  +..+-+.+..+++...|=++|-.|-  |..++.+++ +..+|+-+.+|-|+++++.
T Consensus        29 ~~~~l~~~~~~a~~~~~~~~~~~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~  108 (234)
T PLN02781         29 EHELLKELREATVQKYGNLSEMEVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEV  108 (234)
T ss_pred             CCHHHHHHHHHHHhccccCcccccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHH
Confidence            346788888898655  33543  5555455555555567889999985  555555554 3457999999999999887


Q ss_pred             HHhhC--CCceeEEeeeccchhhHHHHHHHcCCCCCCCCCCCCCcccccccccCCCcccccccccEEEEeCCCC
Q 021206          167 IKEKF--PTLESYHVEYDTKVNEADELMNAVGSDEECRVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTG  238 (316)
Q Consensus       167 v~~~~--P~leay~V~Y~T~v~eA~~LL~~~r~~~~C~pv~~l~~S~CkLAL~~LP~evYe~eWDvImVDgP~G  238 (316)
                      +++..  .+++ ..|  +-...+|.+.|..+..+++                        +-.+|+|.+|++++
T Consensus       109 A~~n~~~~gl~-~~i--~~~~gda~~~L~~l~~~~~------------------------~~~fD~VfiDa~k~  155 (234)
T PLN02781        109 GLEFIKKAGVD-HKI--NFIQSDALSALDQLLNNDP------------------------KPEFDFAFVDADKP  155 (234)
T ss_pred             HHHHHHHcCCC-CcE--EEEEccHHHHHHHHHhCCC------------------------CCCCCEEEECCCHH
Confidence            77653  2232 222  2234566666664432211                        22689999999873

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=93.69  E-value=0.27  Score=44.56  Aligned_cols=120  Identities=23%  Similarity=0.347  Sum_probs=78.4

Q ss_pred             ChhHHHHHHHHHhCCC-CccC--cHHHHHHHHHHhhhcCCccEEEecc--CchhHhHh-hhccCCceeEeccChhHHHHH
Q 021206           94 PPSLANALVHYATTNI-TPQQ--TVKEISVSLRVLAQKSPCNFLVFGL--GYDSLMWS-ALNHGGRTLFLEEDKSWINQI  167 (316)
Q Consensus        94 P~~v~~AlvHYAtsn~-tpqq--t~~Ei~~~~~VL~~raPCNfLVFGL--g~dslmW~-aLN~gGrTvFLEEd~~~i~~v  167 (316)
                      -+.++..+.+++..+. .++|  +..+-+.+...++..-|-|.|-+|-  |.-++.|+ ++-.+|+-+=+|-|+++++..
T Consensus         7 ~~~~l~~l~~~t~~~~~~~~~~i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A   86 (205)
T PF01596_consen    7 EPELLKELREFTRENQGLPQMSISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIA   86 (205)
T ss_dssp             STHHHHHHHHHHHCTTTTGGGSHHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHH
T ss_pred             CCHHHHHHHHHHHhCcCCCCCccCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHH
Confidence            4577889999998765 5555  3345555555555588999999975  77777777 566789999999999998776


Q ss_pred             HhhC--CCceeEEeeeccchhhHHHHHHHcCCCCCCCCCCCCCcccccccccCCCcccccccccEEEEeCCCCCC
Q 021206          168 KEKF--PTLESYHVEYDTKVNEADELMNAVGSDEECRVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYH  240 (316)
Q Consensus       168 ~~~~--P~leay~V~Y~T~v~eA~~LL~~~r~~~~C~pv~~l~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~  240 (316)
                      ++.+  -+++ ..|++  ...+|.+.|..+....                        -+-.+|+|.|||.++-+
T Consensus        87 ~~~~~~ag~~-~~I~~--~~gda~~~l~~l~~~~------------------------~~~~fD~VFiDa~K~~y  134 (205)
T PF01596_consen   87 RENFRKAGLD-DRIEV--IEGDALEVLPELANDG------------------------EEGQFDFVFIDADKRNY  134 (205)
T ss_dssp             HHHHHHTTGG-GGEEE--EES-HHHHHHHHHHTT------------------------TTTSEEEEEEESTGGGH
T ss_pred             HHHHHhcCCC-CcEEE--EEeccHhhHHHHHhcc------------------------CCCceeEEEEcccccch
Confidence            6421  2222 12222  2356777776443211                        03469999999988644

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PRK01581 speE spermidine synthase; Validated

Probab=93.53  E-value=1  Score=45.13  Aligned_cols=147  Identities=21%  Similarity=0.259  Sum_probs=88.6

Q ss_pred             hhcCCccEEEeccCchhHhHhhhccC--CceeEeccChhHHHHHHhhCCCcee-----E-EeeeccchhhHHHHHHHcCC
Q 021206          126 AQKSPCNFLVFGLGYDSLMWSALNHG--GRTLFLEEDKSWINQIKEKFPTLES-----Y-HVEYDTKVNEADELMNAVGS  197 (316)
Q Consensus       126 ~~raPCNfLVFGLg~dslmW~aLN~g--GrTvFLEEd~~~i~~v~~~~P~lea-----y-~V~Y~T~v~eA~~LL~~~r~  197 (316)
                      ....|=+.||.|.|--..+=..+-|.  ++-+-+|=|+.-++-.++ +|.+..     + +=+-+-.+.||.+.|+..  
T Consensus       147 ~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~-~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~--  223 (374)
T PRK01581        147 KVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARN-VPELVSLNKSAFFDNRVNVHVCDAKEFLSSP--  223 (374)
T ss_pred             hCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh-ccccchhccccCCCCceEEEECcHHHHHHhc--
Confidence            44678899999999777766666664  688889999998887775 544421     1 112222335566655410  


Q ss_pred             CCCCCCCCCCCcccccccccCCCcccccccccEEEEeCCCCCCCCCCCchhHHHHHHHHHhhcC----CCCc------eE
Q 021206          198 DEECRVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGRMTAIYTAGLMARNRE----SGET------DV  267 (316)
Q Consensus       198 ~~~C~pv~~l~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~~eaPGRM~AIyTAavmARar~----~g~T------dV  267 (316)
                                                 +-++|||++|.|.+..+    .....||...+...++    ||.-      -.
T Consensus       224 ---------------------------~~~YDVIIvDl~DP~~~----~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~  272 (374)
T PRK01581        224 ---------------------------SSLYDVIIIDFPDPATE----LLSTLYTSELFARIATFLTEDGAFVCQSNSPA  272 (374)
T ss_pred             ---------------------------CCCccEEEEcCCCcccc----chhhhhHHHHHHHHHHhcCCCcEEEEecCChh
Confidence                                       12699999998753322    2477888776655443    3420      01


Q ss_pred             EEecCChhHHHHHHHhhccccccc---ccccceeeeEecCCC
Q 021206          268 FVHDVDRVVEDKFSKAFLCEGYLK---EQEGRIRHFVVPSHR  306 (316)
Q Consensus       268 fVHDVdR~VE~~fs~EFLC~~nLv---~~~GrLwHF~Ip~~~  306 (316)
                      +-.++-..+-+++...|+--....   ..-|-+|=|.|.+..
T Consensus       273 ~~~~~~~~i~~tL~~af~~v~~y~t~vPsyg~~WgF~~as~~  314 (374)
T PRK01581        273 DAPLVYWSIGNTIEHAGLTVKSYHTIVPSFGTDWGFHIAANS  314 (374)
T ss_pred             hhHHHHHHHHHHHHHhCCceEEEEEecCCCCCceEEEEEeCC
Confidence            111222335666777777554333   244667999998753

>PLN02476 O-methyltransferase

Probab=93.43  E-value=0.65  Score=44.39  Aligned_cols=143  Identities=17%  Similarity=0.160  Sum_probs=88.0

Q ss_pred             ChhHHHHHHHHHhCCCC--ccCcHHHHHHHHHHhhhcCCccEEEeccCch-hHhHhhh--ccCCceeEeccChhHHHHHH
Q 021206           94 PPSLANALVHYATTNIT--PQQTVKEISVSLRVLAQKSPCNFLVFGLGYD-SLMWSAL--NHGGRTLFLEEDKSWINQIK  168 (316)
Q Consensus        94 P~~v~~AlvHYAtsn~t--pqqt~~Ei~~~~~VL~~raPCNfLVFGLg~d-slmW~aL--N~gGrTvFLEEd~~~i~~v~  168 (316)
                      +.++++.+.+|+..+.-  ++.+.++-+.+..+++...|=++|=.|-+-. |.+|.+.  ..+|+-+=+|-|+.+++..+
T Consensus        81 ~~~~L~~l~e~a~~~~~~~~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar  160 (278)
T PLN02476         81 EPKILRQLREETSKMRGSQMQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAK  160 (278)
T ss_pred             CCHHHHHHHHHHHhccCCccccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence            45678888888876633  3456766676777777778889999976333 3445544  56899899999999887666


Q ss_pred             hhC--CCceeEEeeeccchhhHHHHHHHcCCCCCCCCCCCCCcccccccccCCCcccccccccEEEEeCCCCCCCCCCCc
Q 021206          169 EKF--PTLESYHVEYDTKVNEADELMNAVGSDEECRVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGR  246 (316)
Q Consensus       169 ~~~--P~leay~V~Y~T~v~eA~~LL~~~r~~~~C~pv~~l~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~~eaPGR  246 (316)
                      +..  -+++ ..|+.  ...+|.+.|..+..+.                        .+-.+|+|.|||+++-++     
T Consensus       161 ~n~~~aGl~-~~I~l--i~GdA~e~L~~l~~~~------------------------~~~~FD~VFIDa~K~~Y~-----  208 (278)
T PLN02476        161 RYYELAGVS-HKVNV--KHGLAAESLKSMIQNG------------------------EGSSYDFAFVDADKRMYQ-----  208 (278)
T ss_pred             HHHHHcCCC-CcEEE--EEcCHHHHHHHHHhcc------------------------cCCCCCEEEECCCHHHHH-----
Confidence            443  3333 22322  2356777776442210                        023589999999984332     


Q ss_pred             hhHHHHHHHHHhhcCCC---CceEEEec
Q 021206          247 MTAIYTAGLMARNRESG---ETDVFVHD  271 (316)
Q Consensus       247 M~AIyTAavmARar~~g---~TdVfVHD  271 (316)
                        ..|- ..+-.-|+||   .-+|+-|.
T Consensus       209 --~y~e-~~l~lL~~GGvIV~DNvL~~G  233 (278)
T PLN02476        209 --DYFE-LLLQLVRVGGVIVMDNVLWHG  233 (278)
T ss_pred             --HHHH-HHHHhcCCCcEEEEecCccCC
Confidence              3333 3344445566   24465554

>PRK00811 spermidine synthase; Provisional

Probab=92.44  E-value=1  Score=42.07  Aligned_cols=99  Identities=17%  Similarity=0.363  Sum_probs=64.3

Q ss_pred             hhhcCCccEEEeccCchhHhHhhhccC--CceeEeccChhHHHHHHhhCCCcee--E-EeeeccchhhHHHHHHHcCCCC
Q 021206          125 LAQKSPCNFLVFGLGYDSLMWSALNHG--GRTLFLEEDKSWINQIKEKFPTLES--Y-HVEYDTKVNEADELMNAVGSDE  199 (316)
Q Consensus       125 L~~raPCNfLVFGLg~dslmW~aLN~g--GrTvFLEEd~~~i~~v~~~~P~lea--y-~V~Y~T~v~eA~~LL~~~r~~~  199 (316)
                      +....|-++||.|.|--...-..+.|.  .+-+.+|=|+.-++.+++..|.+..  + +-+-+-...+|.+.++.   . 
T Consensus        72 ~~~~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~---~-  147 (283)
T PRK00811         72 FAHPNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE---T-  147 (283)
T ss_pred             hhCCCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh---C-
Confidence            444678999999999998888888873  4679999999999988877664321  1 11112223455555541   0 


Q ss_pred             CCCCCCCCCcccccccccCCCcccccccccEEEEeCCCCCCCCCCCchhHHHHHHHHH
Q 021206          200 ECRVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGRMTAIYTAGLMA  257 (316)
Q Consensus       200 ~C~pv~~l~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~~eaPGRM~AIyTAavmA  257 (316)
                                               +-.+|||++|.+..+.|.     ...||...+.
T Consensus       148 -------------------------~~~yDvIi~D~~dp~~~~-----~~l~t~ef~~  175 (283)
T PRK00811        148 -------------------------ENSFDVIIVDSTDPVGPA-----EGLFTKEFYE  175 (283)
T ss_pred             -------------------------CCcccEEEECCCCCCCch-----hhhhHHHHHH
Confidence                                     126999999997765332     2345655443

>PRK03612 spermidine synthase; Provisional

Probab=92.09  E-value=1.2  Score=45.40  Aligned_cols=145  Identities=17%  Similarity=0.202  Sum_probs=82.6

Q ss_pred             hcCCccEEEeccCchhHhHhhhccC--CceeEeccChhHHHHHHh--hCCCcee--EE-eeeccchhhHHHHHHHcCCCC
Q 021206          127 QKSPCNFLVFGLGYDSLMWSALNHG--GRTLFLEEDKSWINQIKE--KFPTLES--YH-VEYDTKVNEADELMNAVGSDE  199 (316)
Q Consensus       127 ~raPCNfLVFGLg~dslmW~aLN~g--GrTvFLEEd~~~i~~v~~--~~P~lea--y~-V~Y~T~v~eA~~LL~~~r~~~  199 (316)
                      .+.|-++|+.|.|--...-..+.|+  .+-+.+|=|+.-++..++  ..+++..  ++ =+.+-...|+.+.++.     
T Consensus       295 ~~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~-----  369 (521)
T PRK03612        295 SARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK-----  369 (521)
T ss_pred             CCCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHh-----
Confidence            4678999999999888777667775  489999999999998887  3333321  11 0111123455555541     


Q ss_pred             CCCCCCCCCcccccccccCCCcccccccccEEEEeCCCCCCCCCCCchhHHHHHHHHHhh----cCCCCceEE-----Ee
Q 021206          200 ECRVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGRMTAIYTAGLMARN----RESGETDVF-----VH  270 (316)
Q Consensus       200 ~C~pv~~l~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~~eaPGRM~AIyTAavmARa----r~~g~TdVf-----VH  270 (316)
                                         .+     -++|+|++|.|..+.|. +   ...||...+...    +.+| .=|+     .|
T Consensus       370 -------------------~~-----~~fDvIi~D~~~~~~~~-~---~~L~t~ef~~~~~~~L~pgG-~lv~~~~~~~~  420 (521)
T PRK03612        370 -------------------LA-----EKFDVIIVDLPDPSNPA-L---GKLYSVEFYRLLKRRLAPDG-LLVVQSTSPYF  420 (521)
T ss_pred             -------------------CC-----CCCCEEEEeCCCCCCcc-h---hccchHHHHHHHHHhcCCCe-EEEEecCCccc
Confidence                               11     15899999987643322 2   335554433332    2334 2121     12


Q ss_pred             c--CChhHHHHHHHh-hcccccc--cccccceeeeEecCCC
Q 021206          271 D--VDRVVEDKFSKA-FLCEGYL--KEQEGRIRHFVVPSHR  306 (316)
Q Consensus       271 D--VdR~VE~~fs~E-FLC~~nL--v~~~GrLwHF~Ip~~~  306 (316)
                      +  .-+.+.+...+. |-+..|.  +..-| .|.|.+.+..
T Consensus       421 ~~~~~~~i~~~l~~~gf~v~~~~~~vps~g-~w~f~~as~~  460 (521)
T PRK03612        421 APKAFWSIEATLEAAGLATTPYHVNVPSFG-EWGFVLAGAG  460 (521)
T ss_pred             chHHHHHHHHHHHHcCCEEEEEEeCCCCcc-hhHHHeeeCC
Confidence            2  223455666666 5333332  23445 8999998653

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=91.48  E-value=0.53  Score=43.40  Aligned_cols=152  Identities=16%  Similarity=0.252  Sum_probs=86.3

Q ss_pred             HHHhhhcCCccEEEeccCchhHhHhhhccC--CceeEeccChhHHHHHHhhCCCceeE--EeeeccchhhHHHHHHHcCC
Q 021206          122 LRVLAQKSPCNFLVFGLGYDSLMWSALNHG--GRTLFLEEDKSWINQIKEKFPTLESY--HVEYDTKVNEADELMNAVGS  197 (316)
Q Consensus       122 ~~VL~~raPCNfLVFGLg~dslmW~aLN~g--GrTvFLEEd~~~i~~v~~~~P~leay--~V~Y~T~v~eA~~LL~~~r~  197 (316)
                      .-++....|=|.||.|+|--......+.|.  .+...+|-|+.-++-.++-+|....-  +=+.+....||.+.|+    
T Consensus        69 ~~~~~~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~----  144 (246)
T PF01564_consen   69 PPLLLHPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLK----  144 (246)
T ss_dssp             HHHHHSSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHH----
T ss_pred             hHhhcCCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHH----
Confidence            344555689999999999999988888886  57889999999888776654432111  1112223356666666    


Q ss_pred             CCCCCCCCCCCcccccccccCCCcccccccccEEEEeCCCCCCCCCCCchhHHHHHHHHHhhcC----CCCceEEEe---
Q 021206          198 DEECRVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGRMTAIYTAGLMARNRE----SGETDVFVH---  270 (316)
Q Consensus       198 ~~~C~pv~~l~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~~eaPGRM~AIyTAavmARar~----~g~TdVfVH---  270 (316)
                                          .-+.+    ++|||++|.+.   |..|+-.  .||.-.+...++    +|.-=+-.+   
T Consensus       145 --------------------~~~~~----~yDvIi~D~~d---p~~~~~~--l~t~ef~~~~~~~L~~~Gv~v~~~~~~~  195 (246)
T PF01564_consen  145 --------------------ETQEE----KYDVIIVDLTD---PDGPAPN--LFTREFYQLCKRRLKPDGVLVLQAGSPF  195 (246)
T ss_dssp             --------------------TSSST-----EEEEEEESSS---TTSCGGG--GSSHHHHHHHHHHEEEEEEEEEEEEETT
T ss_pred             --------------------hccCC----cccEEEEeCCC---CCCCccc--ccCHHHHHHHHhhcCCCcEEEEEccCcc
Confidence                                22222    79999999987   4444433  677665544433    342111111   


Q ss_pred             ---cCChhHHHHHHHhhc-ccccc--ccccc-ceeeeEecCCC
Q 021206          271 ---DVDRVVEDKFSKAFL-CEGYL--KEQEG-RIRHFVVPSHR  306 (316)
Q Consensus       271 ---DVdR~VE~~fs~EFL-C~~nL--v~~~G-rLwHF~Ip~~~  306 (316)
                         +.-+.+.+.+...|- |.-+.  +-.-| ..|-|.+.+..
T Consensus       196 ~~~~~~~~i~~tl~~~F~~v~~~~~~vP~~~~~~~~~~~~s~~  238 (246)
T PF01564_consen  196 LHPELFKSILKTLRSVFPQVKPYTAYVPSYGSGWWSFASASKD  238 (246)
T ss_dssp             TTHHHHHHHHHHHHTTSSEEEEEEEECTTSCSSEEEEEEEESS
T ss_pred             cchHHHHHHHHHHHHhCCceEEEEEEcCeecccceeEEEEeCC
Confidence               122344555555553 22222  22323 45778876654

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PRK04457 spermidine synthase; Provisional

Probab=88.93  E-value=11  Score=35.05  Aligned_cols=44  Identities=25%  Similarity=0.277  Sum_probs=36.4

Q ss_pred             cCCccEEEeccCchhHh--HhhhccCCceeEeccChhHHHHHHhhC
Q 021206          128 KSPCNFLVFGLGYDSLM--WSALNHGGRTLFLEEDKSWINQIKEKF  171 (316)
Q Consensus       128 raPCNfLVFGLg~dslm--W~aLN~gGrTvFLEEd~~~i~~v~~~~  171 (316)
                      ..|=++|+.|+|.-++.  |+...++++-+-+|=|+.-++.+++.+
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f  110 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHF  110 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHc
Confidence            45778999999888764  666677888899999999999888765

>PLN02366 spermidine synthase

Probab=88.68  E-value=3.9  Score=39.33  Aligned_cols=147  Identities=18%  Similarity=0.271  Sum_probs=84.3

Q ss_pred             hcCCccEEEeccCchhHhHhhhccC--CceeEeccChhHHHHHHhhCCCce-eE-EeeeccchhhHHHHHHHcCCCCCCC
Q 021206          127 QKSPCNFLVFGLGYDSLMWSALNHG--GRTLFLEEDKSWINQIKEKFPTLE-SY-HVEYDTKVNEADELMNAVGSDEECR  202 (316)
Q Consensus       127 ~raPCNfLVFGLg~dslmW~aLN~g--GrTvFLEEd~~~i~~v~~~~P~le-ay-~V~Y~T~v~eA~~LL~~~r~~~~C~  202 (316)
                      ...|=++||.|.|.-.+.-..+.|.  .+-+.+|=|+.-|+-.++.+|.+. .+ +=+.+-...+|.+.|+         
T Consensus        89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~---------  159 (308)
T PLN02366         89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLK---------  159 (308)
T ss_pred             CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHh---------
Confidence            4568899999999887776666664  366788989998888877776531 00 0111122234444443         


Q ss_pred             CCCCCCcccccccccCCCcccccccccEEEEeCCCCCCCCCCCchhHHHHHHHHHhhc----CCCC-----ceEEEe-cC
Q 021206          203 VVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGRMTAIYTAGLMARNR----ESGE-----TDVFVH-DV  272 (316)
Q Consensus       203 pv~~l~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~~eaPGRM~AIyTAavmARar----~~g~-----TdVfVH-DV  272 (316)
                                     +.|    +-++|||++|++....|  +   ...||...+...+    .+|.     ...+.| +.
T Consensus       160 ---------------~~~----~~~yDvIi~D~~dp~~~--~---~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~  215 (308)
T PLN02366        160 ---------------NAP----EGTYDAIIVDSSDPVGP--A---QELFEKPFFESVARALRPGGVVCTQAESMWLHMDL  215 (308)
T ss_pred             ---------------hcc----CCCCCEEEEcCCCCCCc--h---hhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHH
Confidence                           222    12699999999876544  2   3355655544433    3452     122333 23


Q ss_pred             ChhHHHHHHHhhc--ccccc--cc-cccceeeeEecCCC
Q 021206          273 DRVVEDKFSKAFL--CEGYL--KE-QEGRIRHFVVPSHR  306 (316)
Q Consensus       273 dR~VE~~fs~EFL--C~~nL--v~-~~GrLwHF~Ip~~~  306 (316)
                      -+.+-+.+...|-  ..-|.  |- -.|-.|-|.+.+..
T Consensus       216 ~~~i~~tl~~~F~~~v~~~~~~vPsy~~g~w~f~~as~~  254 (308)
T PLN02366        216 IEDLIAICRETFKGSVNYAWTTVPTYPSGVIGFVLCSKE  254 (308)
T ss_pred             HHHHHHHHHHHCCCceeEEEecCCCcCCCceEEEEEECC
Confidence            3455666677771  12111  11 22467999998764

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=87.25  E-value=4.6  Score=37.84  Aligned_cols=136  Identities=17%  Similarity=0.184  Sum_probs=85.9

Q ss_pred             ChhHHHHHHHHHhCCCCccC--cHHHHHHHHHHhhhcCCccEEEecc--CchhHhHh-hhccCCceeEeccChhHHHHHH
Q 021206           94 PPSLANALVHYATTNITPQQ--TVKEISVSLRVLAQKSPCNFLVFGL--GYDSLMWS-ALNHGGRTLFLEEDKSWINQIK  168 (316)
Q Consensus        94 P~~v~~AlvHYAtsn~tpqq--t~~Ei~~~~~VL~~raPCNfLVFGL--g~dslmW~-aLN~gGrTvFLEEd~~~i~~v~  168 (316)
                      ..++++.+.++|..+..|.|  +.++-+.+..+++...|=+.|-+|-  |.-++.++ ++..+|+-+=+|=|+.+++..+
T Consensus        42 ~~~~L~~l~~~a~~~~~~~~~~~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar  121 (247)
T PLN02589         42 EPESMKELRELTAKHPWNIMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGL  121 (247)
T ss_pred             CCHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHH
Confidence            34567888889876655544  5677777777777778889999985  55555443 3456899999999999887655


Q ss_pred             hhC--CCceeEEeeeccchhhHHHHHHHcCCCCCCCCCCCCCcccccccccCCCcccccccccEEEEeCCCCCCCCCCCc
Q 021206          169 EKF--PTLESYHVEYDTKVNEADELMNAVGSDEECRVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGR  246 (316)
Q Consensus       169 ~~~--P~leay~V~Y~T~v~eA~~LL~~~r~~~~C~pv~~l~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~~eaPGR  246 (316)
                      +..  -++. ..|.+.  ..+|.+.|..+....                       -|+-.+|+|.|||-++-++     
T Consensus       122 ~~~~~ag~~-~~I~~~--~G~a~e~L~~l~~~~-----------------------~~~~~fD~iFiDadK~~Y~-----  170 (247)
T PLN02589        122 PVIQKAGVA-HKIDFR--EGPALPVLDQMIEDG-----------------------KYHGTFDFIFVDADKDNYI-----  170 (247)
T ss_pred             HHHHHCCCC-CceEEE--eccHHHHHHHHHhcc-----------------------ccCCcccEEEecCCHHHhH-----
Confidence            432  2332 344332  346767666443210                       1234699999998875543     


Q ss_pred             hhHHHHHHHHHhhcCCC
Q 021206          247 MTAIYTAGLMARNRESG  263 (316)
Q Consensus       247 M~AIyTAavmARar~~g  263 (316)
                        ..|- ..+-.-|.||
T Consensus       171 --~y~~-~~l~ll~~GG  184 (247)
T PLN02589        171 --NYHK-RLIDLVKVGG  184 (247)
T ss_pred             --HHHH-HHHHhcCCCe
Confidence              3332 2344555566

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	316
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 2e-05
 Identities = 45/262 (17%), Positives = 76/262 (29%), Gaps = 59/262 (22%)

Query: 74  NTNCPTTTPPSPLTETCTKTPPSLANALVHYATTNITPQQTVKEISVSLRVLAQKSPCNF 133
           N N P T     L +   +  P+  +   H +   +       E+    R+L  K   N 
Sbjct: 191 NCNSPETVL-EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR---RLLKSKPYENC 246

Query: 134 L-----VFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEKFPTLESYHVEYDTKVNEA 188
           L     V     ++  W+A N   + L     K   + +     T  S  +++ +     
Sbjct: 247 LLVLLNV----QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS--LDHHSMTLTP 300

Query: 189 DELMNAVGSDEECRVVTDPRFSKCR---LALKGFPSEVYDV-----EWDLIMVDAPTGYH 240
           DE+ + +    +CR    PR          L      + D       W  +  D  T   
Sbjct: 301 DEVKSLLLKYLDCRPQDLPR-EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359

Query: 241 EAA-----PGRMTAIYTAGLMARNRESGETDVFVHDVD------------------RVVE 277
           E++     P     ++    ++         VF                        VV 
Sbjct: 360 ESSLNVLEPAEYRKMFDR--LS---------VFPPSAHIPTILLSLIWFDVIKSDVMVVV 408

Query: 278 DKFSKAFLCEGYLKEQEGRIRH 299
           +K  K  L E   KE    I  
Sbjct: 409 NKLHKYSLVEKQPKESTISI-P 429

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 24/175 (13%), Positives = 53/175 (30%), Gaps = 40/175 (22%)

Query: 83  PSPLTETCTKTPPSLANALVHYATTNITPQQTVKEISVSLRVLAQKSPCNFLVFGL---G 139
           PS +T    +    L N    +A  N++  Q   ++  +L  L + +  N L+ G+   G
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL-RPAK-NVLIDGVLGSG 162

Query: 140 YDSLMWSALNHGGRTLFLEEDKSWIN-------------------QIKEKFPTLESYHVE 180
              +             ++    W+N                   QI   + +   +   
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222

Query: 181 YDTKVNEADELMNAVGSDEECRVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDA 235
              +++     +         R++    +  C L L        +V  +    +A
Sbjct: 223 IKLRIHSIQAELR--------RLLKSKPYENCLLVLL-------NV-QNAKAWNA 261

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 4e-04
 Identities = 29/182 (15%), Positives = 61/182 (33%), Gaps = 42/182 (23%)

Query: 164 INQIKEKF----PTLESYHVEYDTKVNEADELMNAVGSDEECR--VVTDPRFSKCR---- 213
             + + ++       E   V+ +    +  ++  ++ S EE    +++    S       
Sbjct: 11  TGEHQYQYKDILSVFEDAFVD-NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69

Query: 214 -LALKG------FPSEVYDVEWDLIMVDAPTGYHEAAPGRMTAIYTAGLMARNRESGETD 266
            L  K       F  EV  + +  +M  +P    +  P  MT +Y      R+R   +  
Sbjct: 70  TLLSKQEEMVQKFVEEVLRINYKFLM--SPIKTEQRQPSMMTRMYIE---QRDRLYNDNQ 124

Query: 267 VFV-HDVDRVVEDKFS--KAFLCEGYLKEQEGRIRH------------FVVPSHRTRSAR 311
           VF  ++V R     +   +  L E  L+  +  +               V  S++ +   
Sbjct: 125 VFAKYNVSR--LQPYLKLRQALLE--LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180

Query: 312 PF 313
            F
Sbjct: 181 DF 182

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	316
3cvo_A	202	Methyltransferase-like protein of unknown functio;	96.73
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	93.34
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	92.14
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	87.06
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	85.88
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	85.6
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	82.56
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	82.47
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	81.88
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	80.73
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	80.16

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=96.73  E-value=0.005  Score=54.27  Aligned_cols=165  Identities=17%  Similarity=0.168  Sum_probs=92.0

Q ss_pred             ccCcHHHHHHHHHHhhhcCCccEEEeccCchhHhHhhhccCCceeEeccChhHHHHHHhhCC--Cc-eeEEeeeccchhh
Q 021206          111 PQQTVKEISVSLRVLAQKSPCNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEKFP--TL-ESYHVEYDTKVNE  187 (316)
Q Consensus       111 pqqt~~Ei~~~~~VL~~raPCNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~~P--~l-eay~V~Y~T~v~e  187 (316)
                      +.++.++.+.+...++  .|-+.|-+|-|. |-+|.|...+|+-+=+|-|++|++.+++..-  ++ +...|.+..  .+
T Consensus        14 ~~v~~~~~~~L~~~l~--~a~~VLEiGtGy-STl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~--gd   88 (202)
T 3cvo_A           14 LTMPPAEAEALRMAYE--EAEVILEYGSGG-STVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVW--TD   88 (202)
T ss_dssp             CCSCHHHHHHHHHHHH--HCSEEEEESCSH-HHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEE--CC
T ss_pred             ccCCHHHHHHHHHHhh--CCCEEEEECchH-HHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEE--eC
Confidence            3688888888877443  577999999997 6666665558999999999999988775321  11 122233221  01


Q ss_pred             HHHHHHHcCCCCCCCCCCCCCcccccccccCCCccc--c--cccccEEEEeCCCCCCCCCCCchhHHHHHHHHHhhcCCC
Q 021206          188 ADELMNAVGSDEECRVVTDPRFSKCRLALKGFPSEV--Y--DVEWDLIMVDAPTGYHEAAPGRMTAIYTAGLMARNRESG  263 (316)
Q Consensus       188 A~~LL~~~r~~~~C~pv~~l~~S~CkLAL~~LP~ev--Y--e~eWDvImVDgP~Gy~~eaPGRM~AIyTAavmARar~~g  263 (316)
                      |.+.      ..-..|+....+    -.+..++..+  +  +-..|+|+|||..+        ....+-  .+-+-|.||
T Consensus        89 a~~~------~~wg~p~~~~~~----~~l~~~~~~i~~~~~~~~fDlIfIDg~k~--------~~~~~~--~l~~l~~GG  148 (202)
T 3cvo_A           89 IGPT------GDWGHPVSDAKW----RSYPDYPLAVWRTEGFRHPDVVLVDGRFR--------VGCALA--TAFSITRPV  148 (202)
T ss_dssp             CSSB------CGGGCBSSSTTG----GGTTHHHHGGGGCTTCCCCSEEEECSSSH--------HHHHHH--HHHHCSSCE
T ss_pred             chhh------hcccccccchhh----hhHHHHhhhhhccccCCCCCEEEEeCCCc--------hhHHHH--HHHhcCCCe
Confidence            1000      001222221111    1111112222  1  24699999999652        233333  335555555


Q ss_pred             CceEEEecC-ChhHHHHHHHhhcccccccccccceeeeEecCCC
Q 021206          264 ETDVFVHDV-DRVVEDKFSKAFLCEGYLKEQEGRIRHFVVPSHR  306 (316)
Q Consensus       264 ~TdVfVHDV-dR~VE~~fs~EFLC~~nLv~~~GrLwHF~Ip~~~  306 (316)
                      .  |+++|| .|.-+.. ..+||   .+++..||+..|++.+..
T Consensus       149 ~--Iv~DNv~~r~~y~~-v~~~~---~~~~~~~~~a~f~~~p~~  186 (202)
T 3cvo_A          149 T--LLFDDYSQRRWQHQ-VEEFL---GAPLMIGRLAAFQVEPQP  186 (202)
T ss_dssp             E--EEETTGGGCSSGGG-GHHHH---CCCEEETTEEEEEECCCC
T ss_pred             E--EEEeCCcCCcchHH-HHHHH---hHHhhcCceEEEEeCCCC
Confidence            3  467774 5532221 12333   457899999999996543

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=93.34  E-value=0.14  Score=49.40  Aligned_cols=152  Identities=12%  Similarity=0.126  Sum_probs=92.8

Q ss_pred             cCCccEEEeccCchhHhHhhhccCC-ceeEeccChhHHHHHHhhCCCcee--EE----eeeccchhhHHHHHHHcCCCCC
Q 021206          128 KSPCNFLVFGLGYDSLMWSALNHGG-RTLFLEEDKSWINQIKEKFPTLES--YH----VEYDTKVNEADELMNAVGSDEE  200 (316)
Q Consensus       128 raPCNfLVFGLg~dslmW~aLN~gG-rTvFLEEd~~~i~~v~~~~P~lea--y~----V~Y~T~v~eA~~LL~~~r~~~~  200 (316)
                      ..|=|.||.|+|--..+-..+.|.. +...+|=|+.-|+-.++-+|.+-.  ++    =+.+.-+.||.+-|+.+...  
T Consensus       204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~--  281 (381)
T 3c6k_A          204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKE--  281 (381)
T ss_dssp             CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHH--
T ss_pred             CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhc--
Confidence            3567999999999999988888654 677899999999988887776422  11    11233345777777643221  


Q ss_pred             CCCCCCCCcccccccccCCCcccccccccEEEEeCCCCCCCCCCCch-hHHHHHHHHHhhcC----CCC--c---eEEEe
Q 021206          201 CRVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGRM-TAIYTAGLMARNRE----SGE--T---DVFVH  270 (316)
Q Consensus       201 C~pv~~l~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~~eaPGRM-~AIyTAavmARar~----~g~--T---dVfVH  270 (316)
                                              ..+||||++|.+.+.....|... ...||.-.+...++    +|.  +   -++.|
T Consensus       282 ------------------------~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~~~  337 (381)
T 3c6k_A          282 ------------------------GREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVNLT  337 (381)
T ss_dssp             ------------------------TCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTCH
T ss_pred             ------------------------cCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCCcch
Confidence                                    23699999998876555555444 46788766544332    341  1   23346


Q ss_pred             cCChhHHHHHHHhhcccc---cc--cccccceeeeEecCC
Q 021206          271 DVDRVVEDKFSKAFLCEG---YL--KEQEGRIRHFVVPSH  305 (316)
Q Consensus       271 DVdR~VE~~fs~EFLC~~---nL--v~~~GrLwHF~Ip~~  305 (316)
                      +..+.+++.+.+.|---.   +.  |-.-+..|=|.+.+.
T Consensus       338 ~~~~~i~~tl~~vF~~v~~~~~~~~VPSy~~~W~F~~aSK  377 (381)
T 3c6k_A          338 EALSLYEEQLGRLYCPVEFSKEIVCVPSYLELWVFYTVWK  377 (381)
T ss_dssp             HHHHHHHHHHTTSSSCEEEEEEEECCGGGSSCEEEEEEEE
T ss_pred             hHHHHHHHHHHHhCCcceEeeEEEEecCCCCceeeeEEEC
Confidence            666777777777652111   11  223334788888764

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=87.06  E-value=1.1  Score=41.71  Aligned_cols=81  Identities=19%  Similarity=0.197  Sum_probs=55.3

Q ss_pred             CccEEEeccCchhHhHhhhc--cCCceeEeccChhHHHHHHhhCCCceeEEeeeccchhhHHHHHHHcCCCCCCCCCCCC
Q 021206          130 PCNFLVFGLGYDSLMWSALN--HGGRTLFLEEDKSWINQIKEKFPTLESYHVEYDTKVNEADELMNAVGSDEECRVVTDP  207 (316)
Q Consensus       130 PCNfLVFGLg~dslmW~aLN--~gGrTvFLEEd~~~i~~v~~~~P~leay~V~Y~T~v~eA~~LL~~~r~~~~C~pv~~l  207 (316)
                      |.++|+.|.|--++.-..+.  ++.+.+-+|=|+..++..++.++....-.|  +-...++.+.++.             
T Consensus        90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv--~v~~~Da~~~l~~-------------  154 (317)
T 3gjy_A           90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRV--KIRVDDARMVAES-------------  154 (317)
T ss_dssp             GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTE--EEEESCHHHHHHT-------------
T ss_pred             CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCce--EEEECcHHHHHhh-------------
Confidence            56999999998877655554  577888999999999999988764211011  1223456666651             


Q ss_pred             CcccccccccCCCcccccccccEEEEeCCCCCC
Q 021206          208 RFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYH  240 (316)
Q Consensus       208 ~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~  240 (316)
                                 ++    +-.+|+|++|++.+..
T Consensus       155 -----------~~----~~~fDvIi~D~~~~~~  172 (317)
T 3gjy_A          155 -----------FT----PASRDVIIRDVFAGAI  172 (317)
T ss_dssp             -----------CC----TTCEEEEEECCSTTSC
T ss_pred             -----------cc----CCCCCEEEECCCCccc
Confidence                       11    2468999999887653

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=85.88  E-value=2.7  Score=34.81  Aligned_cols=77  Identities=19%  Similarity=0.185  Sum_probs=59.1

Q ss_pred             ChhHHHHHHHHHhCCCC-ccCcHHHHHHHHHHhhhcCCccEEEeccCc--hhHhHhh-hccCCceeEeccChhHHHHHHh
Q 021206           94 PPSLANALVHYATTNIT-PQQTVKEISVSLRVLAQKSPCNFLVFGLGY--DSLMWSA-LNHGGRTLFLEEDKSWINQIKE  169 (316)
Q Consensus        94 P~~v~~AlvHYAtsn~t-pqqt~~Ei~~~~~VL~~raPCNfLVFGLg~--dslmW~a-LN~gGrTvFLEEd~~~i~~v~~  169 (316)
                      |.++.+++-+|+..+.- .+......+.+..+++...|-++|=+|-|.  -++.++. ++++|+-+-+|-++..++.+++
T Consensus        22 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~  101 (221)
T 3u81_A           22 PQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQ  101 (221)
T ss_dssp             HHHHHHHHHHHHHHHTCGGGCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhcCcCcccCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHH
Confidence            66899999999975544 466777777777777778899999998755  4444444 3568899999999999887776


Q ss_pred             h
Q 021206          170 K  170 (316)
Q Consensus       170 ~  170 (316)
                      +
T Consensus       102 ~  102 (221)
T 3u81_A          102 M  102 (221)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=85.60  E-value=1.9  Score=40.05  Aligned_cols=50  Identities=18%  Similarity=0.303  Sum_probs=40.5

Q ss_pred             HHhhhcCCccEEEeccCchhHhHhhhccC--CceeEeccChhHHHHHHhhCC
Q 021206          123 RVLAQKSPCNFLVFGLGYDSLMWSALNHG--GRTLFLEEDKSWINQIKEKFP  172 (316)
Q Consensus       123 ~VL~~raPCNfLVFGLg~dslmW~aLN~g--GrTvFLEEd~~~i~~v~~~~P  172 (316)
                      -++....|=|.||.|+|-...+-..+.|.  -+.+.+|=|+.-|+-.++-+|
T Consensus        77 ~l~~~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp  128 (294)
T 3o4f_A           77 PLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLP  128 (294)
T ss_dssp             HHHHSSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCH
T ss_pred             HHhhCCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCc
Confidence            34455788999999999999998888874  377889999998887776555

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=82.56  E-value=4.6  Score=36.83  Aligned_cols=49  Identities=24%  Similarity=0.369  Sum_probs=39.0

Q ss_pred             hhhcCCccEEEeccCchhHhHhhhcc--CCceeEeccChhHHHHHHhhCCC
Q 021206          125 LAQKSPCNFLVFGLGYDSLMWSALNH--GGRTLFLEEDKSWINQIKEKFPT  173 (316)
Q Consensus       125 L~~raPCNfLVFGLg~dslmW~aLN~--gGrTvFLEEd~~~i~~v~~~~P~  173 (316)
                      +....|-++|+.|.|.-...-..+.+  +++-+.+|=|+..++..++..+.
T Consensus       104 ~~~~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~  154 (314)
T 2b2c_A          104 FAHPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPG  154 (314)
T ss_dssp             HHSSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTT
T ss_pred             hhCCCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHH
Confidence            34467889999999987766555554  57899999999999999988765

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=82.47  E-value=6.5  Score=32.53  Aligned_cols=77  Identities=12%  Similarity=0.167  Sum_probs=57.5

Q ss_pred             ChhHHHHHHHHHhCCCCccCcHHHHHHHHHHhhhcCCccEEEeccCc--hhHhHhhhccCCceeEeccChhHHHHHHhh
Q 021206           94 PPSLANALVHYATTNITPQQTVKEISVSLRVLAQKSPCNFLVFGLGY--DSLMWSALNHGGRTLFLEEDKSWINQIKEK  170 (316)
Q Consensus        94 P~~v~~AlvHYAtsn~tpqqt~~Ei~~~~~VL~~raPCNfLVFGLg~--dslmW~aLN~gGrTvFLEEd~~~i~~v~~~  170 (316)
                      +.++++.+-+|+..+..+.........+...+....+-++|.+|-|.  -+..++...++++-+-+|-++..++.++++
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~   97 (233)
T 2gpy_A           19 RDQYIEQMEREAHEQQVPIMDLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKH   97 (233)
T ss_dssp             CCHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
Confidence            45788889999876666666666777777777777888999997754  444555555578888899899888777654

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=81.88  E-value=6.8  Score=32.96  Aligned_cols=77  Identities=10%  Similarity=0.003  Sum_probs=57.1

Q ss_pred             ChhHHHHHHHHHhCCCCc--cCcHHHHHHHHHHhhhcCCccEEEeccCch--hHhHhhhc-cCCceeEeccChhHHHHHH
Q 021206           94 PPSLANALVHYATTNITP--QQTVKEISVSLRVLAQKSPCNFLVFGLGYD--SLMWSALN-HGGRTLFLEEDKSWINQIK  168 (316)
Q Consensus        94 P~~v~~AlvHYAtsn~tp--qqt~~Ei~~~~~VL~~raPCNfLVFGLg~d--slmW~aLN-~gGrTvFLEEd~~~i~~v~  168 (316)
                      +..++.++-+++..+..|  +....+.+.+..+++...|-++|-+|-|.-  ++.++... .+|+-+.+|-++.+++.++
T Consensus        35 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~  114 (232)
T 3cbg_A           35 DSFYLAQLRRETAHLPGAPMQISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAK  114 (232)
T ss_dssp             CCHHHHHHHHHTTTSTTGGGSCCHHHHHHHHHHHHHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHcCCCccCcCHHHHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence            456788888998777667  557777777777777678889999987654  34444333 3789999999999988777


Q ss_pred             hh
Q 021206          169 EK  170 (316)
Q Consensus       169 ~~  170 (316)
                      +.
T Consensus       115 ~~  116 (232)
T 3cbg_A          115 KY  116 (232)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=80.73  E-value=8.8  Score=31.21  Aligned_cols=77  Identities=14%  Similarity=0.175  Sum_probs=56.4

Q ss_pred             ChhHHHHHHHHHhCCCCccCcHHHHHHHHHHhhhcCCccEEEeccCch--hHhHhhhcc-CCceeEeccChhHHHHHHhh
Q 021206           94 PPSLANALVHYATTNITPQQTVKEISVSLRVLAQKSPCNFLVFGLGYD--SLMWSALNH-GGRTLFLEEDKSWINQIKEK  170 (316)
Q Consensus        94 P~~v~~AlvHYAtsn~tpqqt~~Ei~~~~~VL~~raPCNfLVFGLg~d--slmW~aLN~-gGrTvFLEEd~~~i~~v~~~  170 (316)
                      +.++...+-+|+..+..|.........+..+++...|-++|-.|-|.-  +..++...+ +|+-+-+|-++..++..+++
T Consensus        21 ~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~  100 (210)
T 3c3p_A           21 ADPVVAAMEQIARERNIPIVDRQTGRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRM  100 (210)
T ss_dssp             CCHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHhhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHH
Confidence            356788889998776667777766666666666678899999987654  444444434 78888899999988877654

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=80.16  E-value=8.5  Score=32.15  Aligned_cols=77  Identities=17%  Similarity=0.156  Sum_probs=56.1

Q ss_pred             ChhHHHHHHHHHhCCCCc--cCcHHHHHHHHHHhhhcCCccEEEeccC--chhHhHhhhcc-CCceeEeccChhHHHHHH
Q 021206           94 PPSLANALVHYATTNITP--QQTVKEISVSLRVLAQKSPCNFLVFGLG--YDSLMWSALNH-GGRTLFLEEDKSWINQIK  168 (316)
Q Consensus        94 P~~v~~AlvHYAtsn~tp--qqt~~Ei~~~~~VL~~raPCNfLVFGLg--~dslmW~aLN~-gGrTvFLEEd~~~i~~v~  168 (316)
                      ...+++.+-+|+..+..|  +........+...+....+-++|..|-|  ..+..++...+ +|+-+-+|-++..++.++
T Consensus        23 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~  102 (239)
T 2hnk_A           23 EPDSFLKLRKETGTLAQANMQISPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVAR  102 (239)
T ss_dssp             CCHHHHHHHHHHHTC---CCSCCHHHHHHHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHcCCcccccCHHHHHHHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence            346778888898877777  5567777777777777889999999775  44555555444 789999999999988877


Q ss_pred             hh
Q 021206          169 EK  170 (316)
Q Consensus       169 ~~  170 (316)
                      +.
T Consensus       103 ~~  104 (239)
T 2hnk_A          103 KY  104 (239)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	316
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	94.17
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	92.8
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	92.26
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	90.8
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	90.22
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	89.73
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	87.65
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	86.21
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	84.89
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	83.13
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	82.69

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.17  E-value=0.033  Score=46.41  Aligned_cols=75  Identities=23%  Similarity=0.306  Sum_probs=58.4

Q ss_pred             ChhHHHHHHHHHhCCCCc-cCcHHHHHHHHHHhhhcCCccEEEec--cCchhHhHh-hhccCCceeEeccChhHHHHHH
Q 021206           94 PPSLANALVHYATTNITP-QQTVKEISVSLRVLAQKSPCNFLVFG--LGYDSLMWS-ALNHGGRTLFLEEDKSWINQIK  168 (316)
Q Consensus        94 P~~v~~AlvHYAtsn~tp-qqt~~Ei~~~~~VL~~raPCNfLVFG--Lg~dslmW~-aLN~gGrTvFLEEd~~~i~~v~  168 (316)
                      |.+|++++=.||..+.-+ +-+.+.=+.+..+++..-|=++|-+|  .|..++.|+ ++..||+-+=+|=+++|++.++
T Consensus        20 p~~vl~~~~~~~~~~~~~m~i~~~~G~lL~~lv~~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~   98 (214)
T d2cl5a1          20 PQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQ   98 (214)
T ss_dssp             HHHHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHhhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHH
Confidence            678999999999765433 44566667788888888999999998  577777665 3567899999999999887654

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.80  E-value=0.19  Score=43.35  Aligned_cols=49  Identities=27%  Similarity=0.337  Sum_probs=39.4

Q ss_pred             HhhhcCCccEEEeccCchhHhHhhhccCC-ceeEeccChhHHHHHHhhCC
Q 021206          124 VLAQKSPCNFLVFGLGYDSLMWSALNHGG-RTLFLEEDKSWINQIKEKFP  172 (316)
Q Consensus       124 VL~~raPCNfLVFGLg~dslmW~aLN~gG-rTvFLEEd~~~i~~v~~~~P  172 (316)
                      .+....|-|.||.|+|--..++..+.|+. +...+|=||.-|+-.++-++
T Consensus        67 l~~~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~  116 (276)
T d1mjfa_          67 MLAHPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIK  116 (276)
T ss_dssp             HHHSSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTC
T ss_pred             hhcCCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhh
Confidence            34557899999999999999999998865 55678999999887765443

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=92.26  E-value=0.86  Score=38.22  Aligned_cols=136  Identities=15%  Similarity=0.127  Sum_probs=85.2

Q ss_pred             ChhHHHHHHHHHhCCCCccC--cHHHHHHHHHHhhhcCCccEEEecc--CchhHhHh-hhccCCceeEeccChhHHHHHH
Q 021206           94 PPSLANALVHYATTNITPQQ--TVKEISVSLRVLAQKSPCNFLVFGL--GYDSLMWS-ALNHGGRTLFLEEDKSWINQIK  168 (316)
Q Consensus        94 P~~v~~AlvHYAtsn~tpqq--t~~Ei~~~~~VL~~raPCNfLVFGL--g~dslmW~-aLN~gGrTvFLEEd~~~i~~v~  168 (316)
                      +++++..|.+++..+.-|.|  +..+-+.+..+++..-|=+.|-+|-  |.-++.++ ++..+|+-+=+|-|++++...+
T Consensus        22 ~~~~l~~l~~~~~~~~~~~m~~~~~~g~~L~~L~~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~  101 (227)
T d1susa1          22 EHEAMKELREVTAKHPWNIMTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGL  101 (227)
T ss_dssp             CTTHHHHHHHHHHTSTTGGGSCCHHHHHHHHHHHHHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHhCCCcccccCHHHHHHHHHHHHhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHH
Confidence            35678889999977766643  4555666666666688999999986  55455444 5667899999999999987666


Q ss_pred             hhC--CCceeEEeeeccchhhHHHHHHHcCCCCCCCCCCCCCcccccccccCCCcccccccccEEEEeCCCCCCCCCCCc
Q 021206          169 EKF--PTLESYHVEYDTKVNEADELMNAVGSDEECRVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGR  246 (316)
Q Consensus       169 ~~~--P~leay~V~Y~T~v~eA~~LL~~~r~~~~C~pv~~l~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~~eaPGR  246 (316)
                      +.+  .+++- +|+  -...+|.+.|..+-.                       +...+-.+|+|+|||=++..      
T Consensus       102 ~~~~~~g~~~-~i~--~~~g~a~~~L~~l~~-----------------------~~~~~~~fD~iFiDa~k~~y------  149 (227)
T d1susa1         102 PVIKKAGVDH-KID--FREGPALPVLDEMIK-----------------------DEKNHGSYDFIFVDADKDNY------  149 (227)
T ss_dssp             HHHHHTTCGG-GEE--EEESCHHHHHHHHHH-----------------------CGGGTTCBSEEEECSCSTTH------
T ss_pred             HHHHHhcccc-cee--eeehHHHHHHHHHHh-----------------------ccccCCceeEEEeccchhhh------
Confidence            432  12211 222  222455555542211                       11224579999999977543      


Q ss_pred             hhHHHHHHHHHhhcCCC
Q 021206          247 MTAIYTAGLMARNRESG  263 (316)
Q Consensus       247 M~AIyTAavmARar~~g  263 (316)
                       ...|-.+ +-.=|+||
T Consensus       150 -~~~~e~~-~~ll~~gG  164 (227)
T d1susa1         150 -LNYHKRL-IDLVKVGG  164 (227)
T ss_dssp             -HHHHHHH-HHHBCTTC
T ss_pred             -HHHHHHH-HhhcCCCc
Confidence             3444433 45556666

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=90.80  E-value=0.85  Score=39.92  Aligned_cols=152  Identities=18%  Similarity=0.302  Sum_probs=86.9

Q ss_pred             HhhhcCCccEEEeccCchhHhHhhhccC--CceeEeccChhHHHHHHhhCCCcee--E-EeeeccchhhHHHHHHHcCCC
Q 021206          124 VLAQKSPCNFLVFGLGYDSLMWSALNHG--GRTLFLEEDKSWINQIKEKFPTLES--Y-HVEYDTKVNEADELMNAVGSD  198 (316)
Q Consensus       124 VL~~raPCNfLVFGLg~dslmW~aLN~g--GrTvFLEEd~~~i~~v~~~~P~lea--y-~V~Y~T~v~eA~~LL~~~r~~  198 (316)
                      .+....|=|.||.|+|-...+...+.|.  .+-.-+|=|+.-|+-.++-+|....  + +=+-+--+.+|.+.|+..   
T Consensus        72 l~~~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~---  148 (312)
T d1uira_          72 MLTHPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT---  148 (312)
T ss_dssp             HHHSSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC---
T ss_pred             hhhCCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhc---
Confidence            3445678899999999999988888764  4678899999998877765432110  0 000111135666666521   


Q ss_pred             CCCCCCCCCCcccccccccCCCcccccccccEEEEeCCCCCCCCCCCchhHHHHHHHH---Hhh-cCCCC--ceE--EE-
Q 021206          199 EECRVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGRMTAIYTAGLM---ARN-RESGE--TDV--FV-  269 (316)
Q Consensus       199 ~~C~pv~~l~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~~eaPGRM~AIyTAavm---ARa-r~~g~--TdV--fV-  269 (316)
                                                +.+||||++|.+.-+..+.|..  ..||--..   +|. +.+|.  +.+  .. 
T Consensus       149 --------------------------~~~yDvIi~D~~dp~~~~~~~~--~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~  200 (312)
T d1uira_         149 --------------------------EERYDVVIIDLTDPVGEDNPAR--LLYTVEFYRLVKAHLNPGGVMGMQTGMILL  200 (312)
T ss_dssp             --------------------------CCCEEEEEEECCCCBSTTCGGG--GGSSHHHHHHHHHTEEEEEEEEEEEEEECC
T ss_pred             --------------------------CCcccEEEEeCCCcccccchhh--hhhhHHHHHHHHHhcCCCceEEEecCCccc
Confidence                                      4479999999976444444332  24554332   222 23452  221  11 


Q ss_pred             --ecCChhHHHHHHHhhcccccc---cccccceeeeEecCCC
Q 021206          270 --HDVDRVVEDKFSKAFLCEGYL---KEQEGRIRHFVVPSHR  306 (316)
Q Consensus       270 --HDVdR~VE~~fs~EFLC~~nL---v~~~GrLwHF~Ip~~~  306 (316)
                        .++.+.+-+.+...|--=...   |-+-|.-|.|.+.+..
T Consensus       201 ~~~~~~~~i~~tl~~~F~~V~~y~~~vPs~~~~w~f~~aS~~  242 (312)
T d1uira_         201 THHRVHPVVHRTVREAFRYVRSYKNHIPGFFLNFGFLLASDA  242 (312)
T ss_dssp             ---CHHHHHHHHHHTTCSEEEEEEEEEGGGTEEEEEEEEESS
T ss_pred             chHHHHHHHHHHHHHhCceEEEEEeeeCCcCCCCEeEEEeCC
Confidence              123345566677777321111   2233556999997753

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=90.22  E-value=0.4  Score=42.75  Aligned_cols=108  Identities=19%  Similarity=0.352  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHhhhcCCccEEEeccCchhHhHhhhccC--CceeEeccChhHHHHHHhhCCCcee-E-EeeeccchhhHHH
Q 021206          115 VKEISVSLRVLAQKSPCNFLVFGLGYDSLMWSALNHG--GRTLFLEEDKSWINQIKEKFPTLES-Y-HVEYDTKVNEADE  190 (316)
Q Consensus       115 ~~Ei~~~~~VL~~raPCNfLVFGLg~dslmW~aLN~g--GrTvFLEEd~~~i~~v~~~~P~lea-y-~V~Y~T~v~eA~~  190 (316)
                      ..|.-+-.-.+....|=|.||.|+|--..+...+.|.  .+...+|=|+.-|.-.++-+|.... + +=+.+-...+|.+
T Consensus        92 YhE~l~h~pl~~~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~  171 (312)
T d2b2ca1          92 YQEMLAHLPMFAHPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFE  171 (312)
T ss_dssp             HHHHHHHHHHHHSSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHH
T ss_pred             HHHHhhhHHHhcCCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHH
Confidence            3444444445566789999999999999999999976  5899999999999887776665321 0 0111222356666


Q ss_pred             HHHHcCCCCCCCCCCCCCcccccccccCCCcccccccccEEEEeCCCCCCCCCCCchhHHHHHHHH
Q 021206          191 LMNAVGSDEECRVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGRMTAIYTAGLM  256 (316)
Q Consensus       191 LL~~~r~~~~C~pv~~l~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~~eaPGRM~AIyTAavm  256 (316)
                      -|+..                             +-+||||++|.+.+..+  |   ...||.--+
T Consensus       172 ~l~~~-----------------------------~~~yDvII~D~~dp~~~--~---~~L~t~eFy  203 (312)
T d2b2ca1         172 FLKNH-----------------------------KNEFDVIITDSSDPVGP--A---ESLFGQSYY  203 (312)
T ss_dssp             HHHHC-----------------------------TTCEEEEEECCC------------------HH
T ss_pred             HHHhC-----------------------------CCCCCEEEEcCCCCCCc--c---hhhhhHHHH
Confidence            66511                             33699999999875432  2   346664433

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.73  E-value=0.26  Score=43.01  Aligned_cols=149  Identities=15%  Similarity=0.242  Sum_probs=90.0

Q ss_pred             hhhcCCccEEEeccCchhHhHhhhccCC--ceeEeccChhHHHHHHhhCCCcee-E-EeeeccchhhHHHHHHHcCCCCC
Q 021206          125 LAQKSPCNFLVFGLGYDSLMWSALNHGG--RTLFLEEDKSWINQIKEKFPTLES-Y-HVEYDTKVNEADELMNAVGSDEE  200 (316)
Q Consensus       125 L~~raPCNfLVFGLg~dslmW~aLN~gG--rTvFLEEd~~~i~~v~~~~P~lea-y-~V~Y~T~v~eA~~LL~~~r~~~~  200 (316)
                      +....|=|.||.|+|-...+...+-|.+  +.+.+|=|+.-|+-.++-+|.... + +-+.+.-+.||.+-++       
T Consensus        76 ~~~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~-------  148 (290)
T d1xj5a_          76 CSIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLK-------  148 (290)
T ss_dssp             TTSSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHH-------
T ss_pred             hhCCCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHh-------
Confidence            3456788999999999999999998854  788999999998877765543211 0 1222222345555554       


Q ss_pred             CCCCCCCCcccccccccCCCcccccccccEEEEeCCCCCCCCCCCchhHHHHHHHHHhhc---C-CCC--ceEEE----e
Q 021206          201 CRVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGRMTAIYTAGLMARNR---E-SGE--TDVFV----H  270 (316)
Q Consensus       201 C~pv~~l~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~~eaPGRM~AIyTAavmARar---~-~g~--TdVfV----H  270 (316)
                                       +.+    +.+||||++|.+.++.+   .  ...||--....-+   + +|.  +.+--    .
T Consensus       149 -----------------~~~----~~~yDvIi~D~~dp~~~---~--~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~  202 (290)
T d1xj5a_         149 -----------------NAA----EGSYDAVIVDSSDPIGP---A--KELFEKPFFQSVARALRPGGVVCTQAESLWLHM  202 (290)
T ss_dssp             -----------------TSC----TTCEEEEEECCCCTTSG---G--GGGGSHHHHHHHHHHEEEEEEEEEECCCTTTCH
T ss_pred             -----------------hcc----ccCccEEEEcCCCCCCc---c--hhhCCHHHHHHHHHhcCCCcEEEEecCCcHHHH
Confidence                             222    23699999999986532   2  4577765443332   2 341  11101    1


Q ss_pred             cCChhHHHHHHHhhc-ccccc---ccc-ccceeeeEecCCC
Q 021206          271 DVDRVVEDKFSKAFL-CEGYL---KEQ-EGRIRHFVVPSHR  306 (316)
Q Consensus       271 DVdR~VE~~fs~EFL-C~~nL---v~~-~GrLwHF~Ip~~~  306 (316)
                      +.-+.+-+.+.+.|- ...|.   +-. .|-.|=|.+.+..
T Consensus       203 ~~~~~i~~~l~~vF~~~~~y~~~~vPty~~g~w~f~~as~~  243 (290)
T d1xj5a_         203 DIIEDIVSNCREIFKGSVNYAWTSVPTYPSGVIGFMLCSTE  243 (290)
T ss_dssp             HHHHHHHHHHHHHCSSCEEEEEEECTTSGGGEEEEEEEECS
T ss_pred             HHHHHHHhhhhhhcccceeEeeEeeeeecCCceEEEEEeCC
Confidence            223456677777884 44554   222 2458999997643

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.65  E-value=1.3  Score=38.28  Aligned_cols=149  Identities=15%  Similarity=0.229  Sum_probs=80.9

Q ss_pred             HhhhcCCccEEEeccCchhHhHhhhccC--CceeEeccChhHHHHHHhhCCCcee-E-EeeeccchhhHHHHHHHcCCCC
Q 021206          124 VLAQKSPCNFLVFGLGYDSLMWSALNHG--GRTLFLEEDKSWINQIKEKFPTLES-Y-HVEYDTKVNEADELMNAVGSDE  199 (316)
Q Consensus       124 VL~~raPCNfLVFGLg~dslmW~aLN~g--GrTvFLEEd~~~i~~v~~~~P~lea-y-~V~Y~T~v~eA~~LL~~~r~~~  199 (316)
                      .+....|=+.||.|+|-...+=..+.|.  -+.+-+|=|+.-++-.++-+|.... + +=+.+....||.+.|+.     
T Consensus        73 l~~~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~-----  147 (285)
T d2o07a1          73 LCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQ-----  147 (285)
T ss_dssp             HTTSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHT-----
T ss_pred             hhhCcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhc-----
Confidence            3445678899999999998888888763  4778899999998877765543211 0 01122224577777761     


Q ss_pred             CCCCCCCCCcccccccccCCCcccccccccEEEEeCCCCCCCCCCCchhHHHHHHHHHhh----cCCCC--ceEEEecCC
Q 021206          200 ECRVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGRMTAIYTAGLMARN----RESGE--TDVFVHDVD  273 (316)
Q Consensus       200 ~C~pv~~l~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~~eaPGRM~AIyTAavmARa----r~~g~--TdVfVHDVd  273 (316)
                       +                       +-++|||++|.+.+..+  |   ...||---...-    +.+|.  +.+-..+.+
T Consensus       148 -~-----------------------~~~yDvIi~D~~~p~~~--~---~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~  198 (285)
T d2o07a1         148 -N-----------------------QDAFDVIITDSSDPMGP--A---ESLFKESYYQLMKTALKEDGVLCCQGECQWLH  198 (285)
T ss_dssp             -C-----------------------SSCEEEEEEECC----------------CHHHHHHHHHEEEEEEEEEEEECTTTC
T ss_pred             -C-----------------------CCCCCEEEEcCCCCCCc--c---cccccHHHHHHHHHhcCCCCeEEEeccchhhh
Confidence             0                       23699999999886543  2   456664333222    22352  222122232


Q ss_pred             ----hhHHHHHHHhhccccc-c--ccc-ccceeeeEecCCC
Q 021206          274 ----RVVEDKFSKAFLCEGY-L--KEQ-EGRIRHFVVPSHR  306 (316)
Q Consensus       274 ----R~VE~~fs~EFLC~~n-L--v~~-~GrLwHF~Ip~~~  306 (316)
                          +.+-+.+...|-=-.. .  +.. .|..|=|.+.+.+
T Consensus       199 ~~~~~~~~~tl~~~F~~v~~y~~~vP~~~~g~w~f~~aSk~  239 (285)
T d2o07a1         199 LDLIKEMRQFCQSLFPVVAYAYCTIPTYPSGQIGFMLCSKN  239 (285)
T ss_dssp             HHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEEEEEEEESS
T ss_pred             HHHHHHHHHHHHhcCCeeeEEeeeeeecCCCCeEEEEEECC
Confidence                3445556666642111 1  112 2678899987754

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=86.21  E-value=0.57  Score=40.36  Aligned_cols=51  Identities=22%  Similarity=0.367  Sum_probs=39.0

Q ss_pred             HHHhhhcCCccEEEeccCchhHhHhhhccC--CceeEeccChhHHHHHHhhCC
Q 021206          122 LRVLAQKSPCNFLVFGLGYDSLMWSALNHG--GRTLFLEEDKSWINQIKEKFP  172 (316)
Q Consensus       122 ~~VL~~raPCNfLVFGLg~dslmW~aLN~g--GrTvFLEEd~~~i~~v~~~~P  172 (316)
                      .-.+....|=|.||.|+|-.+.+=..+-|.  .+-..+|=|+.-++-.++-+|
T Consensus        68 ~~l~~~~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~  120 (274)
T d1iy9a_          68 VPLFTHPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLP  120 (274)
T ss_dssp             HHHHHSSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCH
T ss_pred             chhhccCCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhCh
Confidence            334555678899999999999887778764  367789999998877666543

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=84.89  E-value=1  Score=35.46  Aligned_cols=56  Identities=20%  Similarity=0.175  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHhhh--cCCccEEEeccCchhHhHhhhccCCceeEeccChhHHHHHHhh
Q 021206          115 VKEISVSLRVLAQ--KSPCNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEK  170 (316)
Q Consensus       115 ~~Ei~~~~~VL~~--raPCNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~  170 (316)
                      ..--..+++.|+.  ...+++|=.|=|.-.+--.++..|.+-+|+|-|+..++.++++
T Consensus        25 ~~v~e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N   82 (171)
T d1ws6a1          25 VRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKEN   82 (171)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccccCCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHH
Confidence            3334567777776  3577888777777777777888899999999999999877755

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=83.13  E-value=0.64  Score=40.78  Aligned_cols=49  Identities=18%  Similarity=0.342  Sum_probs=38.7

Q ss_pred             HhhhcCCccEEEeccCchhHhHhhhccCC--ceeEeccChhHHHHHHhhCC
Q 021206          124 VLAQKSPCNFLVFGLGYDSLMWSALNHGG--RTLFLEEDKSWINQIKEKFP  172 (316)
Q Consensus       124 VL~~raPCNfLVFGLg~dslmW~aLN~gG--rTvFLEEd~~~i~~v~~~~P  172 (316)
                      ++.+..|=|.||.|+|-...+-..+.|.+  +.+.+|=||.-|+-.++-+|
T Consensus        84 l~~~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~  134 (295)
T d1inla_          84 MFLHPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLK  134 (295)
T ss_dssp             HHHSSSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCH
T ss_pred             HhhCCCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHH
Confidence            44557899999999999999988888754  46778999998877665443

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.69  E-value=11  Score=30.79  Aligned_cols=141  Identities=18%  Similarity=0.102  Sum_probs=84.7

Q ss_pred             hhHHHHHHHHHhCCCCc--cCcHHHHHHHHHHhhhcCCccEEEeccCch-hHhHhh--hccCCceeEeccChhHHHHHHh
Q 021206           95 PSLANALVHYATTNITP--QQTVKEISVSLRVLAQKSPCNFLVFGLGYD-SLMWSA--LNHGGRTLFLEEDKSWINQIKE  169 (316)
Q Consensus        95 ~~v~~AlvHYAtsn~tp--qqt~~Ei~~~~~VL~~raPCNfLVFGLg~d-slmW~a--LN~gGrTvFLEEd~~~i~~v~~  169 (316)
                      +++++.+-+++..+..+  +.+.++-+.+..+++..-|=|.|-.|-+.. |.+|-+  +..+|+-+=+|=|+.++..+++
T Consensus        23 ~~~l~~l~~~t~~~~~~~~~i~~~~g~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~  102 (219)
T d2avda1          23 HPALRSLRLLTLEQPQGDSMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRP  102 (219)
T ss_dssp             CHHHHHHHHHHHTSTTGGGSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHH
T ss_pred             CHHHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHH
Confidence            35888888888765443  556666666666666688999999987543 455554  4568998889999999877664


Q ss_pred             hC--CCceeEEeeeccchhhHHHHHHHcCCCCCCCCCCCCCcccccccccCCCcccccccccEEEEeCCCCCCCCCCCch
Q 021206          170 KF--PTLESYHVEYDTKVNEADELMNAVGSDEECRVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGRM  247 (316)
Q Consensus       170 ~~--P~leay~V~Y~T~v~eA~~LL~~~r~~~~C~pv~~l~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~~eaPGRM  247 (316)
                      ..  -+++.   +.+-.+.+|.+.|...-...                        .+-.+|+|.+|+-+...       
T Consensus       103 ~~~~ag~~~---~i~~~~Gda~e~l~~~~~~~------------------------~~~~fD~ifiD~dk~~y-------  148 (219)
T d2avda1         103 LWRQAEAEH---KIDLRLKPALETLDELLAAG------------------------EAGTFDVAVVDADKENC-------  148 (219)
T ss_dssp             HHHHTTCTT---TEEEEESCHHHHHHHHHHTT------------------------CTTCEEEEEECSCSTTH-------
T ss_pred             HHHhcCccc---eEEEEEeehhhcchhhhhhc------------------------ccCCccEEEEeCCHHHH-------
Confidence            42  12221   12223455555554221110                        12348999999877544       


Q ss_pred             hHHHHHHHHHhhcCCCCceEEEecC
Q 021206          248 TAIYTAGLMARNRESGETDVFVHDV  272 (316)
Q Consensus       248 ~AIyTAavmARar~~g~TdVfVHDV  272 (316)
                      ...|-.+ +-+=|+||-  +.++|+
T Consensus       149 ~~~~~~~-~~lL~~GGv--ii~Dn~  170 (219)
T d2avda1         149 SAYYERC-LQLLRPGGI--LAVLRV  170 (219)
T ss_dssp             HHHHHHH-HHHEEEEEE--EEEECC
T ss_pred             HHHHHHH-HHHhcCCcE--EEEeCC
Confidence            3444443 334444552  344555