Citrus Sinensis ID: 021210

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310------
Protein Sequence
MAVQVQLSSLWLPSPTVTVPFVHCKSKTKPSTTSLASSASLSSSLSSSAPIIQTVGGKQSSWHGGNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTV
Secondary Structure (PSIPRED)
cccEEEcccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccHHHHHHHHHHHHHcHHHHccccccccccccccHHHHHHHHHHHHcccccEEEEEEEcccccccccHHHHHHHccccEEEEEEccccccHHHHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccHHHHHHHHccccccccccccccccccEEEEEcccEEEEEcccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHccEcccEccEccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccHHcHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccEEEEEEEcccccccccccHHHHHHccccEEEEEEcHHcccHHHHHHHHHHHHHcccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccHHHHHHHHHcccccccccccccccccEEEEEcccEEEcccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mavqvqlsslwlpsptvtvpfvhcksktkpsttslassaslssslsssapiiqtvggkqsswhggnsnnsngsieaYEEECDWADLDADLYYwtkslrpvqwypghiaKTEKELKDQLKLMDVVIEVRdariplstthplmdqwlgnRKRILVLNREDMISMADRNAWATYFAKQGTKvifsngqlgmgTMKLSRLAKALASDvnvkrrskgllpravragivgypnvgksSLINRLLKrrmcpaaprpgvtRVLKWVRFgkdlefldspgiipmrISDQAAAIKLAICddigersyDVADVAAILVQMLARIPTV
Flexible Loop (DISEMBL)
mavqvqlsslwlpsptvtVPFVHCKSKTKPSTTSLASSASLSSSLSSSAPIIQTVggkqsswhggnSNNSNGSIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRdariplstthplmdqwlgNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALAsdvnvkrrskgllpravragivgypnvgksSLINRLLKrrmcpaaprpgvtrvlkWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTV
Low Complexity Region (SEG)
MAVQVQLSSLWLPSPTVTVPFVHCksktkpsttslassaslssslsssapIIQTVGGKQSSWHggnsnnsngsIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTV
Disordered region (IsUnstruct)
*******SSLWLPSPTVTVPFVHC***************************************************AYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARI***
Disordered Region (DISOPRED)
*********************************************************************************************TKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGM**MKLSRLAKALAS**********LLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTV
Disordered Region (DISEMBL)
MAVQVQLSSLWLPSPTVTVPFVHC***********************SAPIIQ*************SNNSNGSIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTV
Disordered Region (DISPRO)
*AVQVQLSSLWLPSPTVTVPFVHCK**********************SAPIIQTVGGKQSSWHGGNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPT*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVQVQLSSLWLPSPTVTVPFVHCKSKTKPSTTSLASSASLSSSLSSSAPIIQTVGGKQSSWHGGNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	316	2.2.26 [Sep-21-2011]
Q819W8	296	Ribosome biogenesis GTPas	yes	no	0.674	0.719	0.394	2e-43
C5D8U8	283	Ribosome biogenesis GTPas	yes	no	0.674	0.752	0.397	4e-43
O31743	282	Ribosome biogenesis GTPas	yes	no	0.667	0.748	0.388	4e-42
E0TTS5	282	Ribosome biogenesis GTPas	yes	no	0.667	0.748	0.388	4e-42
Q65JP4	283	Ribosome biogenesis GTPas	yes	no	0.667	0.745	0.402	1e-41
A8FD69	282	Ribosome biogenesis GTPas	yes	no	0.667	0.748	0.369	3e-41
B7GGD6	284	Ribosome biogenesis GTPas	yes	no	0.670	0.746	0.403	6e-41
D5DJL5	288	Ribosome biogenesis GTPas	yes	no	0.667	0.732	0.382	1e-39
Q9WZM6	262	Ribosome biogenesis GTPas	yes	no	0.534	0.645	0.335	3e-24
P75135	271	Probable ribosome biogene	yes	no	0.623	0.726	0.324	1e-23

>sp|Q819W8|RBGA_BACCR Ribosome biogenesis GTPase A OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=rbgA PE=3 SV=1

 Score =  176 bits (445), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 84/213 (39%), Positives = 136/213 (63%)

Query: 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
           +QW+PGH+AK  +++ ++LKL+DVVIE+ DAR+PLS+ +P++D+ + ++ R++VLN+ DM
Sbjct: 3   IQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADM 62

Query: 160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVR 219
                   W  YF ++G   I  N Q G G  +++   K L  +   K  +KG+ PRA+R
Sbjct: 63  ADDRLTKQWIAYFKEKGHMAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIR 122

Query: 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISD 279
           A IVG PNVGKS+LIN+L K+ +     RPGVT   +W++ GK++E LD+PGI+  +  D
Sbjct: 123 ALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWPKFED 182

Query: 280 QAAAIKLAICDDIGERSYDVADVAAILVQMLAR 312
           Q   ++LA    I +   ++ DVA   ++ + +
Sbjct: 183 QLVGLRLATTGAIKDSILNLQDVAVYALRFMEK 215

Essential protein that is required for a late step of 50S ribosomal subunit assembly. Has GTPase activity that is stimulated by interaction with the immature 50S ribosome subunit. Binds to the 23S rRNA. Required for the association of ribosomal proteins rplP and rpmA with the large subunit.
Bacillus cereus (strain ATCC 14579 / DSM 31) (taxid: 226900)

>sp|C5D8U8|RBGA_GEOSW Ribosome biogenesis GTPase A OS=Geobacillus sp. (strain WCH70) GN=rbgA PE=3 SV=1

 Score =  175 bits (443), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 85/214 (39%), Positives = 134/214 (62%), Gaps = 1/214 (0%)

Query: 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
           +QW+PGH+AK ++E++++LKL+D+V E+ DARIPLS+ +P++ + LGN+ RI++LN+ DM
Sbjct: 5   IQWFPGHMAKAKREVQEKLKLIDIVFELLDARIPLSSRNPMIHEILGNKPRIVLLNKADM 64

Query: 160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLL-PRAV 218
                   W  YF +Q    +  + Q G G  ++   AK +  D   K  +KG+  PR +
Sbjct: 65  ADETVTEQWIAYFERQQLHALAIDAQTGTGIRQIVSAAKEMLKDKFAKMAAKGIKNPRPM 124

Query: 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRIS 278
           RA IVG PNVGKS+LINRL  R +     +PGVT+  +W++ GK++E LD+PGI+  +  
Sbjct: 125 RALIVGIPNVGKSTLINRLAGRNIAKTGDKPGVTKAQQWIKVGKEMELLDTPGILWPKFE 184

Query: 279 DQAAAIKLAICDDIGERSYDVADVAAILVQMLAR 312
           D+   +KLA    I +   ++ DVA   +  L +
Sbjct: 185 DEEVGLKLATTGAIKDTILNLQDVAVYALNFLKQ 218

Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity. Binds to the 23S rRNA.

Geobacillus sp. (strain WCH70) (taxid: 471223)

>sp|O31743|RBGA_BACSU Ribosome biogenesis GTPase A OS=Bacillus subtilis (strain 168) GN=rbgA PE=1 SV=1

 Score =  172 bits (435), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 82/211 (38%), Positives = 134/211 (63%)

Query: 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
           +QW+PGH+AK  +E+ ++LKL+D+V E+ DARIP+S+ +P+++  L N+ RI++LN+ D 
Sbjct: 3   IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADK 62

Query: 160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVR 219
              A    W  +F  QG + +  N   G G  ++   +K +  +   + R+KG+ PRA+R
Sbjct: 63  ADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIR 122

Query: 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISD 279
           A I+G PNVGKS+LINRL K+ +     RPG+T   +WV+ GK+LE LD+PGI+  +  D
Sbjct: 123 ALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFED 182

Query: 280 QAAAIKLAICDDIGERSYDVADVAAILVQML 310
           +   ++LA+   I +   ++ DVA   ++ L
Sbjct: 183 ELVGLRLAVTGAIKDSIINLQDVAVFGLRFL 213

Essential protein that is required for a late step of 50S ribosomal subunit assembly. Has GTPase activity that is stimulated by interaction with the immature 50S ribosome subunit. Binds to the 23S rRNA. Required for the association of ribosomal proteins rplP and rpmA with the large subunit.

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|E0TTS5|RBGA_BACPZ Ribosome biogenesis GTPase A OS=Bacillus subtilis subsp. spizizenii (strain ATCC 23059 / NRRL B-14472 / W23) GN=rbgA PE=3 SV=1

 Score =  172 bits (435), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 82/211 (38%), Positives = 134/211 (63%)

Query: 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
           +QW+PGH+AK  +E+ ++LKL+D+V E+ DARIP+S+ +P+++  L N+ RI++LN+ D 
Sbjct: 3   IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADK 62

Query: 160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVR 219
              A    W  +F  QG + +  N   G G  ++   +K +  +   + R+KG+ PRA+R
Sbjct: 63  ADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIR 122

Query: 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISD 279
           A I+G PNVGKS+LINRL K+ +     RPG+T   +WV+ GK+LE LD+PGI+  +  D
Sbjct: 123 ALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFED 182

Query: 280 QAAAIKLAICDDIGERSYDVADVAAILVQML 310
           +   ++LA+   I +   ++ DVA   ++ L
Sbjct: 183 ELVGLRLAVTGAIKDSIINLQDVAVFGLRFL 213

Essential protein that is required for a late step of 50S ribosomal subunit assembly. Has GTPase activity that is stimulated by interaction with the immature 50S ribosome subunit. Binds to the 23S rRNA. Required for the association of ribosomal proteins rplP and rpmA with the large subunit.

Bacillus subtilis subsp. spizizenii (strain ATCC 23059 / NRRL B-14472 / W23) (taxid: 655816)

>sp|Q65JP4|RBGA_BACLD Ribosome biogenesis GTPase A OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rbgA PE=3 SV=1

 Score =  170 bits (431), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 85/211 (40%), Positives = 133/211 (63%)

Query: 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
           +QW+PGH+AK  +E+ ++LKL+D+V E+ DARIP+S+ +P+++  L N+ RI++LN+ D 
Sbjct: 3   IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADK 62

Query: 160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVR 219
              +   AW  +F K G   +  N   G G  ++   +K L  +   K ++KG+ PRA+R
Sbjct: 63  ADSSVTKAWKQHFEKDGIPTLAINSVNGQGLNQILPASKELLKEKFDKMKAKGVKPRAIR 122

Query: 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISD 279
           A IVG PNVGKS+LINRL K+ +     RPGVT   +WV+ GK+LE LD+PGI+  +  D
Sbjct: 123 ALIVGIPNVGKSTLINRLAKKNIAKTGDRPGVTTAQQWVKVGKELELLDTPGILWPKFED 182

Query: 280 QAAAIKLAICDDIGERSYDVADVAAILVQML 310
           +   ++LA    I +   ++ DVA   ++ L
Sbjct: 183 ELVGLRLAATGAIKDSIINLQDVAVYGLRFL 213

Essential protein that is required for a late step of 50S ribosomal subunit assembly. Has GTPase activity that is stimulated by interaction with the immature 50S ribosome subunit. Binds to the 23S rRNA. Required for the association of ribosomal proteins rplP and rpmA with the large subunit.

Bacillus licheniformis (strain DSM 13 / ATCC 14580) (taxid: 279010)

>sp|A8FD69|RBGA_BACP2 Ribosome biogenesis GTPase A OS=Bacillus pumilus (strain SAFR-032) GN=rbgA PE=3 SV=1

 Score =  169 bits (427), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 78/211 (36%), Positives = 135/211 (63%)

Query: 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
           +QW+PGH+AK  +E+ ++LKL+D+V E+ DARIP+S+ +P++++ L N+ +I++LN+ D 
Sbjct: 3   IQWFPGHMAKARREVTEKLKLIDIVFELTDARIPMSSRNPMIEEILQNKPKIMLLNKADK 62

Query: 160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVR 219
                   W  +F +QG + +  N   G G  ++   +K +  +   + ++KG+ PRA+R
Sbjct: 63  ADPRVTKEWQAHFEQQGVRSLAINSVDGQGLNQIITTSKEILKEKFDRMKAKGVKPRAIR 122

Query: 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISD 279
           A I+G PNVGKS+LINRL K+ +     RPG+T   +WV+ GK++E LD+PGI+  +  D
Sbjct: 123 ALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKEMELLDTPGILWPKFED 182

Query: 280 QAAAIKLAICDDIGERSYDVADVAAILVQML 310
           +   ++LA+   I +   ++ DVA   ++ L
Sbjct: 183 EKVGLRLAVTGAIKDSIINLQDVAVYGLRFL 213

Essential protein that is required for a late step of 50S ribosomal subunit assembly. Has GTPase activity that is stimulated by interaction with the immature 50S ribosome subunit. Binds to the 23S rRNA. Required for the association of ribosomal proteins rplP and rpmA with the large subunit.

Bacillus pumilus (strain SAFR-032) (taxid: 315750)

>sp|B7GGD6|RBGA_ANOFW Ribosome biogenesis GTPase A OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=rbgA PE=3 SV=1

 Score =  168 bits (425), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 86/213 (40%), Positives = 132/213 (61%), Gaps = 1/213 (0%)

Query: 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
           +QW+PGH+AK ++E+ ++LKL+D+V E+ DARIP+S+ +PL+D+ + N+ RI++LN+ DM
Sbjct: 6   IQWFPGHMAKAKREVTEKLKLIDIVFELVDARIPMSSRNPLIDEIVANKPRIILLNKADM 65

Query: 160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGL-LPRAV 218
                   W  +FA Q    I  + Q G G  ++  +AK        K  +KG+  PRA+
Sbjct: 66  ADPDVTKQWVDFFAAQQIDAIAIDSQSGTGVKQMVAVAKEKLRSKFEKMMAKGMKRPRAM 125

Query: 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRIS 278
           RA IVG PNVGKS+LINRL  + +      PGVT+  +W++ GK+LE LD+PGI+  +  
Sbjct: 126 RALIVGIPNVGKSTLINRLAGKHIAKTGDTPGVTKAQQWIKVGKELELLDTPGILWPKFE 185

Query: 279 DQAAAIKLAICDDIGERSYDVADVAAILVQMLA 311
           D+    KLA    I +   ++ DVA   ++ LA
Sbjct: 186 DEEVGYKLATTGAIKDTILNLQDVAVYALRFLA 218

Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity. Binds to the 23S rRNA.

Anoxybacillus flavithermus (strain DSM 21510 / WK1) (taxid: 491915)

>sp|D5DJL5|RBGA_BACMD Ribosome biogenesis GTPase A OS=Bacillus megaterium (strain DSM 319) GN=rbgA PE=3 SV=1

 Score =  163 bits (413), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 81/212 (38%), Positives = 132/212 (62%), Gaps = 1/212 (0%)

Query: 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
           +QW+PGH+AK  +++ ++LKL+D+V E+ DARIP S+ +P++D+ + N+ RI++LN+ D 
Sbjct: 3   IQWFPGHMAKARRQVTEKLKLIDIVYELVDARIPQSSRNPMIDEIIVNKPRIVLLNKVDK 62

Query: 160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLL-PRAV 218
                   W  Y+ +QG   +  + Q G G  ++   +K L  +   + R+KG+  PRA+
Sbjct: 63  ADPRVTQQWLDYYKEQGIYALAIDAQAGKGMKQIVSSSKELLQEKFDRMRAKGVKKPRAI 122

Query: 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRIS 278
           RA IVG PNVGKS+LINRL  +++     RPGVT+  +W++ G +LE LD+PGI+  +  
Sbjct: 123 RAMIVGIPNVGKSTLINRLASKKIAKTGDRPGVTQAQQWIKVGNELELLDTPGILWPKFE 182

Query: 279 DQAAAIKLAICDDIGERSYDVADVAAILVQML 310
           D+    KLA    I +   ++ DVA   ++ L
Sbjct: 183 DETVGYKLATTGAIKDTILNMQDVAVYALRFL 214

Essential protein that is required for a late step of 50S ribosomal subunit assembly. Has GTPase activity that is stimulated by interaction with the immature 50S ribosome subunit. Binds to the 23S rRNA. Required for the association of ribosomal proteins rplP and rpmA with the large subunit.

Bacillus megaterium (strain DSM 319) (taxid: 592022)

>sp|Q9WZM6|RBGA_THEMA Ribosome biogenesis GTPase A OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=rbgA PE=1 SV=1

 Score =  112 bits (281), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 101/188 (53%), Gaps = 19/188 (10%)

Query: 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMIS 161
           WYPGHI K ++++KD L+L++ V+EVRDAR P +T+   +D     ++ I++LN+ D+  
Sbjct: 3   WYPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD--FSRKETIILLNKVDIAD 60

Query: 162 MADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAG 221
                 W  +F KQG +VI ++              K     V +K+ S     R  R  
Sbjct: 61  EKTTKKWVEFFKKQGKRVITTH--------------KGEPRKVLLKKLS---FDRLARVL 103

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQA 281
           IVG PN GKS++IN+L  +R      +PG+T+ ++W      ++ LD+PGI+   I  + 
Sbjct: 104 IVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLENGVKILDTPGILYKNIFSED 163

Query: 282 AAIKLAIC 289
            A KL + 
Sbjct: 164 LAAKLLLV 171

Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity. Binds to the 23S rRNA.

Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) (taxid: 243274)

>sp|P75135|RBGA_MYCPN Probable ribosome biogenesis GTPase A OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129) GN=rbgA PE=1 SV=1

 Score =  110 bits (276), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 109/219 (49%), Gaps = 22/219 (10%)

Query: 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
           + W+PGH+ KT  +LK     +D VIEV DAR P  T +P +  +  N+ ++ +  + D+
Sbjct: 10  INWFPGHMKKTHDQLKKLASSLDGVIEVVDARAPTLTQNPEITAYFTNKPKLTLALKADL 69

Query: 160 I-SMADRNA-WATYFAKQGTKVIFSNGQLGMGTMKLSRLA-KALASDVNVKR---RSKGL 213
             ++A+ N  W T   KQG              ++L RL  K L +    K+   ++KGL
Sbjct: 70  AQTVANSNILWGTL--KQG--------------LQLKRLVIKKLQTLFQAKKNQLKAKGL 113

Query: 214 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGII 273
           L    R  ++G PNVGKSSLIN LL +     A R GVT+ + W +   +    D+PG+ 
Sbjct: 114 LVHQFRLAVIGMPNVGKSSLINLLLNKNHLQVANRAGVTKSMSWNQISSEFYLSDTPGVF 173

Query: 274 PMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLAR 312
             RI + A   KL + + I      + DV A     L++
Sbjct: 174 FKRIDEMAVGYKLVLTNVIKREVVPLEDVGAFAFCYLSK 212

Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity. Binds to the 23S rRNA.

Mycoplasma pneumoniae (strain ATCC 29342 / M129) (taxid: 272634)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	316
359479858	367	PREDICTED: ribosome biogenesis GTPase A-	0.965	0.831	0.75	1e-130
118485967	367	unknown [Populus trichocarpa]	0.952	0.820	0.743	1e-129
224085461	387	predicted protein [Populus trichocarpa]	0.952	0.777	0.743	1e-129
449464824	370	PREDICTED: ribosome biogenesis GTPase A-	0.974	0.832	0.731	1e-128
363807764	391	uncharacterized protein LOC100784201 [Gl	0.955	0.772	0.729	1e-124
17644179	372	unknown protein [Arabidopsis thaliana]	0.974	0.827	0.692	1e-119
22328255	372	GTP-binding protein [Arabidopsis thalian	0.974	0.827	0.692	1e-119
297814025	372	GTP-binding family protein [Arabidopsis	0.974	0.827	0.692	1e-118
255559442	366	Nucleolar GTP-binding protein, putative	0.895	0.773	0.701	1e-118
218196848	371	hypothetical protein OsI_20063 [Oryza sa	0.765	0.652	0.838	1e-118

>gi|359479858|ref|XP_002271564.2| PREDICTED: ribosome biogenesis GTPase A-like [Vitis vinifera] gi|296086696|emb|CBI32331.3| unnamed protein product [Vitis vinifera]

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 234/312 (75%), Positives = 262/312 (83%), Gaps = 7/312 (2%)

Query: 5   VQLSSLWLPSPTVTVPFVHCKSKTKPSTTSLASSASLSSSLSSSAPIIQTVGGKQSSWHG 64
           V L  +W+P+PT++   +   S+ KPSTT+LA++  L+SS +     IQ VGGK    + 
Sbjct: 3   VALCGVWMPNPTLSGNVL--PSQIKPSTTALAATPHLASSST-----IQIVGGKSHGQYV 55

Query: 65  GNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVV 124
               +SN + E   EE  W +LDADLY+WTK LRP+QWYPGHIAKTEKELK+QLKLMDVV
Sbjct: 56  NGGVSSNRTFEDISEESYWTNLDADLYHWTKKLRPIQWYPGHIAKTEKELKEQLKLMDVV 115

Query: 125 IEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNG 184
           IEV+DARIPLST+HP M+ WLGNRKRILVLNREDMIS  DRNAWATY+A QG KV+FSNG
Sbjct: 116 IEVQDARIPLSTSHPQMESWLGNRKRILVLNREDMISTEDRNAWATYYAMQGIKVVFSNG 175

Query: 185 QLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCP 244
           QLGMG+MKLSRLAK LAS VNVKRR+KGLLPR VRAGIVGYPNVGKSSLINRLLKRRMCP
Sbjct: 176 QLGMGSMKLSRLAKTLASGVNVKRRAKGLLPRPVRAGIVGYPNVGKSSLINRLLKRRMCP 235

Query: 245 AAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAA 304
           AAPRPGVTR LKWV+FGKDLE LDSPGIIPMRISDQ+AAIKLAICDDIGERSYDVADVAA
Sbjct: 236 AAPRPGVTRQLKWVQFGKDLELLDSPGIIPMRISDQSAAIKLAICDDIGERSYDVADVAA 295

Query: 305 ILVQMLARIPTV 316
           ILVQML RIP V
Sbjct: 296 ILVQMLTRIPAV 307

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118485967|gb|ABK94828.1| unknown [Populus trichocarpa]

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 235/316 (74%), Positives = 258/316 (81%), Gaps = 15/316 (4%)

Query: 5   VQLSSLWLPSPTVTV---PFVHCKSKTKPSTTSLASSASLSSSLSSSAPIIQTVGGKQS- 60
           V++  LWLP+P +     PF+H    + P+  SL + ASLSS      P IQ VGGK + 
Sbjct: 3   VEVLGLWLPNPAIRFNRPPFLHL---SPPTRASLVTPASLSSP----PPTIQIVGGKSTP 55

Query: 61  SWHGGNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKL 120
           SW G  ++   G      EE DW D + DLY+WTK LRPVQWYPGHIAKTEKELK+QLKL
Sbjct: 56  SWQGSGNDVCGGG----GEETDWYDFETDLYHWTKPLRPVQWYPGHIAKTEKELKEQLKL 111

Query: 121 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 180
           MDVVIEVRDARIPLSTTHP MD WLGNRKRILVLNREDMIS ADRNAWATYFA+QG KV+
Sbjct: 112 MDVVIEVRDARIPLSTTHPQMDAWLGNRKRILVLNREDMISKADRNAWATYFARQGIKVV 171

Query: 181 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 240
            SNGQLGMGTMKLSR AK+LA+ VNVKRR KGLLPR VRAGIVGYPNVGKSSLINRLLKR
Sbjct: 172 LSNGQLGMGTMKLSRFAKSLAASVNVKRREKGLLPRPVRAGIVGYPNVGKSSLINRLLKR 231

Query: 241 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 300
           RMCPAAPRPGVTR L+WVRFG DLE LDSPGIIPMRISDQ+AAIKLAICDDIGERSYDV 
Sbjct: 232 RMCPAAPRPGVTRELRWVRFGNDLELLDSPGIIPMRISDQSAAIKLAICDDIGERSYDVT 291

Query: 301 DVAAILVQMLARIPTV 316
           DVAAILVQ+L ++PTV
Sbjct: 292 DVAAILVQILTKLPTV 307

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085461|ref|XP_002307583.1| predicted protein [Populus trichocarpa] gi|222857032|gb|EEE94579.1| predicted protein [Populus trichocarpa]

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 235/316 (74%), Positives = 258/316 (81%), Gaps = 15/316 (4%)

Query: 5   VQLSSLWLPSPTVTV---PFVHCKSKTKPSTTSLASSASLSSSLSSSAPIIQTVGGKQS- 60
           V++  LWLP+P +     PF+H    + P+  SL + ASLSS      P IQ VGGK + 
Sbjct: 3   VEVLGLWLPNPAIRFNRPPFLHL---SPPTRASLVTPASLSSP----PPTIQIVGGKSTP 55

Query: 61  SWHGGNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKL 120
           SW G  ++   G      EE DW D + DLY+WTK LRPVQWYPGHIAKTEKELK+QLKL
Sbjct: 56  SWQGSGNDVCGGG----GEETDWYDFETDLYHWTKPLRPVQWYPGHIAKTEKELKEQLKL 111

Query: 121 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 180
           MDVVIEVRDARIPLSTTHP MD WLGNRKRILVLNREDMIS ADRNAWATYFA+QG KV+
Sbjct: 112 MDVVIEVRDARIPLSTTHPQMDAWLGNRKRILVLNREDMISKADRNAWATYFARQGIKVV 171

Query: 181 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 240
            SNGQLGMGTMKLSR AK+LA+ VNVKRR KGLLPR VRAGIVGYPNVGKSSLINRLLKR
Sbjct: 172 LSNGQLGMGTMKLSRFAKSLAASVNVKRREKGLLPRPVRAGIVGYPNVGKSSLINRLLKR 231

Query: 241 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 300
           RMCPAAPRPGVTR L+WVRFG DLE LDSPGIIPMRISDQ+AAIKLAICDDIGERSYDV 
Sbjct: 232 RMCPAAPRPGVTRELRWVRFGNDLELLDSPGIIPMRISDQSAAIKLAICDDIGERSYDVT 291

Query: 301 DVAAILVQMLARIPTV 316
           DVAAILVQ+L ++PTV
Sbjct: 292 DVAAILVQILTKLPTV 307

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464824|ref|XP_004150129.1| PREDICTED: ribosome biogenesis GTPase A-like [Cucumis sativus] gi|449507918|ref|XP_004163166.1| PREDICTED: ribosome biogenesis GTPase A-like [Cucumis sativus]

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 232/317 (73%), Positives = 258/317 (81%), Gaps = 9/317 (2%)

Query: 1   MAVQVQLSSLWLPSPTVTVP-FVHCKSKTKPSTTSLASSASLSSSLSSSAPIIQTVGGKQ 59
           M++ +  S  +LP+     P    C+S   PS  SLA SAS+SS      P IQ VGGK 
Sbjct: 1   MSLHIHPSGFFLPNTRTIYPQLFFCRSG--PSPPSLAPSASVSSP----HPTIQIVGGKT 54

Query: 60  SSWHGGNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLK 119
           S++ G ++     + E  E   DW D +ADLYYWT +LRPVQWYPGHIAKTEKELKDQLK
Sbjct: 55  SNFLGDSTPKGASNNELLE--GDWVDFEADLYYWTNALRPVQWYPGHIAKTEKELKDQLK 112

Query: 120 LMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKV 179
           LMDVVIEVRDARIP+ST+HP MD WLGNR+RILVLNREDMIS ADRNAWATYF +QG KV
Sbjct: 113 LMDVVIEVRDARIPMSTSHPQMDAWLGNRRRILVLNREDMISSADRNAWATYFTRQGIKV 172

Query: 180 IFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLK 239
           +FSNGQ GMGTMKL RLAK LA+DVNVKRR+KGLLPRAVRAGIVGYPNVGKSSLINRLLK
Sbjct: 173 VFSNGQHGMGTMKLGRLAKTLAADVNVKRRAKGLLPRAVRAGIVGYPNVGKSSLINRLLK 232

Query: 240 RRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDV 299
           RRMCPAAPRPGVTR LKWVRFG DLE LDSPGIIPMRISDQ AAIKLAICDDIGERSY+ 
Sbjct: 233 RRMCPAAPRPGVTRELKWVRFGNDLELLDSPGIIPMRISDQTAAIKLAICDDIGERSYNA 292

Query: 300 ADVAAILVQMLARIPTV 316
           ADVAAILVQ+L ++P+V
Sbjct: 293 ADVAAILVQILTKLPSV 309

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807764|ref|NP_001242175.1| uncharacterized protein LOC100784201 [Glycine max] gi|255634965|gb|ACU17841.1| unknown [Glycine max]

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 232/318 (72%), Positives = 260/318 (81%), Gaps = 16/318 (5%)

Query: 3   VQVQLSSLWLP-SPTVTVPFVHCKSKTKPSTTSLASSASLSSSLSSSAPIIQTVGGKQSS 61
           + VQLSSLW+P SP +   FV       P+    ++SA     LSS +P IQ +G    S
Sbjct: 1   MSVQLSSLWVPNSPPIPQHFV-------PNRGRFSASA-----LSSQSPTIQIIGVGGPS 48

Query: 62  WHGGNSNNSNGS--IEAYEEECD-WADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQL 118
           W      N N +   +  + E D W++LD DLY+WTK+LRPVQW+PGHIAK EKELK+QL
Sbjct: 49  WRENGYGNPNNNNLFDGCQGESDHWSELDTDLYHWTKALRPVQWFPGHIAKAEKELKEQL 108

Query: 119 KLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTK 178
           KLMDVVIEVRD RIP+ST+HP MD WLGNRKRILVLNREDMIS ADRNAWA YF + GTK
Sbjct: 109 KLMDVVIEVRDGRIPMSTSHPQMDPWLGNRKRILVLNREDMISTADRNAWADYFTRNGTK 168

Query: 179 VIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLL 238
           V+FSNGQLGMGTMKL RLAK LA+DVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLL
Sbjct: 169 VVFSNGQLGMGTMKLGRLAKELAADVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLL 228

Query: 239 KRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYD 298
           KRRMCPAAPRPGVTR L+WVRFGKDLE LDSPGI+PMRISDQ+AAIKLAICDDIGERSYD
Sbjct: 229 KRRMCPAAPRPGVTRELRWVRFGKDLELLDSPGILPMRISDQSAAIKLAICDDIGERSYD 288

Query: 299 VADVAAILVQMLARIPTV 316
           VADVAAILVQML+++PTV
Sbjct: 289 VADVAAILVQMLSKLPTV 306

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|17644179|gb|AAL38787.1| unknown protein [Arabidopsis thaliana]

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 216/312 (69%), Positives = 250/312 (80%), Gaps = 4/312 (1%)

Query: 6   QLSSLWLPSPTVTVPFVHCKSKTKPSTTSLASSASLSSSLSSSAPIIQTVGGKQSSWHGG 65
           QL+    PSP     FVH ++  +    + A SASL ++ SS  P IQ VGGK  +    
Sbjct: 4   QLAPSPSPSPANVSHFVHHRTFRQ---CTYAVSASLPTANSSRPPPIQIVGGKDLNLDVT 60

Query: 66  NSNNSNG-SIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVV 124
             ++S G  +EA E+E DW +L++D+  WT++LRPVQWYPGHI KTEKEL++QLKLMDVV
Sbjct: 61  RKDDSIGFKLEANEDEIDWMNLESDIRLWTRALRPVQWYPGHIMKTEKELREQLKLMDVV 120

Query: 125 IEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNG 184
           IEVRDARIPLSTTHP MD WLGNRKRILVLNREDMIS  DRN WA YFAKQG KVIF+NG
Sbjct: 121 IEVRDARIPLSTTHPKMDAWLGNRKRILVLNREDMISNDDRNDWARYFAKQGIKVIFTNG 180

Query: 185 QLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCP 244
           +LGMG MKL RLAK+LA DVN KRR KGLLPR+VRAGI+GYPNVGKSSLINRLLKR++C 
Sbjct: 181 KLGMGAMKLGRLAKSLAGDVNGKRREKGLLPRSVRAGIIGYPNVGKSSLINRLLKRKICA 240

Query: 245 AAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAA 304
           AAPRPGVTR +KWV+ GKDL+ LDSPG++PMRI DQAAAIKLAICDDIGE++YD  DVA 
Sbjct: 241 AAPRPGVTREMKWVKLGKDLDLLDSPGMLPMRIDDQAAAIKLAICDDIGEKAYDFTDVAG 300

Query: 305 ILVQMLARIPTV 316
           ILVQMLARIP V
Sbjct: 301 ILVQMLARIPEV 312

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22328255|ref|NP_192188.2| GTP-binding protein [Arabidopsis thaliana] gi|23297397|gb|AAN12960.1| unknown protein [Arabidopsis thaliana] gi|332656830|gb|AEE82230.1| GTP-binding protein [Arabidopsis thaliana]

 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 216/312 (69%), Positives = 250/312 (80%), Gaps = 4/312 (1%)

Query: 6   QLSSLWLPSPTVTVPFVHCKSKTKPSTTSLASSASLSSSLSSSAPIIQTVGGKQSSWHGG 65
           QL+    PSP     FVH ++  +    + A SASL ++ SS  P IQ VGGK  +    
Sbjct: 4   QLAPSPSPSPANVSHFVHRRTFRQ---CTYAVSASLPTANSSRPPPIQIVGGKDLNLDVT 60

Query: 66  NSNNSNG-SIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVV 124
             ++S G  +EA E+E DW +L++D+  WT++LRPVQWYPGHI KTEKEL++QLKLMDVV
Sbjct: 61  RKDDSIGFKLEANEDEIDWMNLESDIRLWTRALRPVQWYPGHIMKTEKELREQLKLMDVV 120

Query: 125 IEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNG 184
           IEVRDARIPLSTTHP MD WLGNRKRILVLNREDMIS  DRN WA YFAKQG KVIF+NG
Sbjct: 121 IEVRDARIPLSTTHPKMDAWLGNRKRILVLNREDMISNDDRNDWARYFAKQGIKVIFTNG 180

Query: 185 QLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCP 244
           +LGMG MKL RLAK+LA DVN KRR KGLLPR+VRAGI+GYPNVGKSSLINRLLKR++C 
Sbjct: 181 KLGMGAMKLGRLAKSLAGDVNGKRREKGLLPRSVRAGIIGYPNVGKSSLINRLLKRKICA 240

Query: 245 AAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAA 304
           AAPRPGVTR +KWV+ GKDL+ LDSPG++PMRI DQAAAIKLAICDDIGE++YD  DVA 
Sbjct: 241 AAPRPGVTREMKWVKLGKDLDLLDSPGMLPMRIDDQAAAIKLAICDDIGEKAYDFTDVAG 300

Query: 305 ILVQMLARIPTV 316
           ILVQMLARIP V
Sbjct: 301 ILVQMLARIPEV 312

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297814025|ref|XP_002874896.1| GTP-binding family protein [Arabidopsis lyrata subsp. lyrata] gi|297320733|gb|EFH51155.1| GTP-binding family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 216/312 (69%), Positives = 250/312 (80%), Gaps = 4/312 (1%)

Query: 6   QLSSLWLPSPTVTVPFVHCKSKTKPSTTSLASSASLSSSLSSSAPIIQTVGGKQSSWHGG 65
           QL+    PSP     FVH ++  +    + A SASL ++ SS  P IQ VGGK  +    
Sbjct: 4   QLAPSPSPSPANLSHFVHRRTFRQ---CTYAVSASLPTANSSRPPPIQIVGGKDLNLDVT 60

Query: 66  NSNNSNG-SIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVV 124
             ++S G  +EA E+E DW +L++D+  WT++LRPVQWYPGHI KTEKEL++QLKLMDVV
Sbjct: 61  RKDDSIGFKLEANEDEIDWMNLESDIRLWTRALRPVQWYPGHIMKTEKELREQLKLMDVV 120

Query: 125 IEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNG 184
           IEVRDARIPLSTTHP MD WLGNRKRILVLNREDMIS  DRN WA YFAKQG KVIF+NG
Sbjct: 121 IEVRDARIPLSTTHPKMDAWLGNRKRILVLNREDMISNDDRNDWARYFAKQGIKVIFTNG 180

Query: 185 QLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCP 244
           +LGMG MKL RLAK+LA DVN KRR KGLLPR+VRAGI+GYPNVGKSSLINRLLKR++C 
Sbjct: 181 KLGMGAMKLGRLAKSLAGDVNGKRREKGLLPRSVRAGIIGYPNVGKSSLINRLLKRKICA 240

Query: 245 AAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAA 304
           AAPRPGVTR +KWV+ GKDL+ LDSPG++PMRI DQAAAIKLAICDDIGE++YD  DVA 
Sbjct: 241 AAPRPGVTREMKWVKLGKDLDLLDSPGMLPMRIDDQAAAIKLAICDDIGEKAYDFTDVAG 300

Query: 305 ILVQMLARIPTV 316
           ILVQMLARIP V
Sbjct: 301 ILVQMLARIPEV 312

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559442|ref|XP_002520741.1| Nucleolar GTP-binding protein, putative [Ricinus communis] gi|223540126|gb|EEF41703.1| Nucleolar GTP-binding protein, putative [Ricinus communis]

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 219/312 (70%), Positives = 241/312 (77%), Gaps = 29/312 (9%)

Query: 5   VQLSSLWLPSPTVTVPFVHCKSKTKPSTTSLASSASLSSSLSSSAPIIQTVGGKQSSWHG 64
           VQ+  LW P+ TV V          P T S           S+    +  +GGK  + +G
Sbjct: 3   VQILGLWSPNYTVCVHL--------PETRS-----------SNRVHSVVNIGGKTPTLYG 43

Query: 65  GNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVV 124
                      A  +E DW  L+ DLYYWTK LRPVQWYPGHIAKTEKELK+QLKLMDVV
Sbjct: 44  ----------NATLDETDWVGLETDLYYWTKPLRPVQWYPGHIAKTEKELKEQLKLMDVV 93

Query: 125 IEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNG 184
           IEVRDARIPLSTTHP MD WLGNRKRILVLNREDMIS ADRNAWA YFA QG K +F+NG
Sbjct: 94  IEVRDARIPLSTTHPQMDSWLGNRKRILVLNREDMISKADRNAWANYFATQGIKAVFANG 153

Query: 185 QLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCP 244
           Q GMGT+KLSRLAKALA+ VNVKRR+KGLLPR VRAG+VGYPNVGKSSLINRLLKRRMC 
Sbjct: 154 QFGMGTVKLSRLAKALAASVNVKRRAKGLLPRPVRAGVVGYPNVGKSSLINRLLKRRMCE 213

Query: 245 AAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAA 304
           AA RPGVTR LKWVRFG +LE LDSPG++PMRI+DQ+AAIKLAICDDIGERSYDVADVAA
Sbjct: 214 AASRPGVTRELKWVRFGNELELLDSPGMLPMRINDQSAAIKLAICDDIGERSYDVADVAA 273

Query: 305 ILVQMLARIPTV 316
           ILVQML RIP+V
Sbjct: 274 ILVQMLTRIPSV 285

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218196848|gb|EEC79275.1| hypothetical protein OsI_20063 [Oryza sativa Indica Group]

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 203/242 (83%), Positives = 220/242 (90%)

Query: 75  EAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL 134
           E Y++E  W +LDADL YWT+SLRPVQWYPGHIAKTEKELK+QLKLMDVVIEVRDARIPL
Sbjct: 70  EDYDKEMFWENLDADLRYWTRSLRPVQWYPGHIAKTEKELKEQLKLMDVVIEVRDARIPL 129

Query: 135 STTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLS 194
           +T+HP MD WLGNRKRI+V+NREDM+S  DRNAWA+YFA QGTKV++SNGQLGMGTMKL 
Sbjct: 130 ATSHPKMDAWLGNRKRIIVMNREDMVSNEDRNAWASYFANQGTKVVYSNGQLGMGTMKLG 189

Query: 195 RLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV 254
           R+AK+LAS VN KRR KGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 
Sbjct: 190 RMAKSLASTVNTKRREKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRE 249

Query: 255 LKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIP 314
           LKWVRFG DLE LDSPGI+PMRISDQ AAIKLAICDDIGERSYD ADVAAILVQ+L R P
Sbjct: 250 LKWVRFGSDLELLDSPGILPMRISDQTAAIKLAICDDIGERSYDFADVAAILVQLLVRHP 309

Query: 315 TV 316
            V
Sbjct: 310 AV 311

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	316
UNIPROTKB|Q5TKI5	371	OSJNBb0048I21.12 "Os05g0430400	0.765	0.652	0.838	3e-108
TAIR|locus:2140270	372	EMB3129 "AT4G02790" [Arabidops	0.838	0.712	0.744	1.1e-103
UNIPROTKB|Q7NEL3	296	glr3866 "Ribosome biogenesis G	0.667	0.712	0.473	4.6e-50
UNIPROTKB|Q720E9	287	LMOf2365_1290 "Ribosome biogen	0.674	0.742	0.389	5.7e-43
UNIPROTKB|Q81WJ8	296	BAS3689 "Ribosome biogenesis G	0.674	0.719	0.384	1.1e-41
TIGR_CMR|BA_3976	296	BA_3976 "GTPase family protein	0.674	0.719	0.384	1.1e-41
UNIPROTKB|O31743	282	rbgA "Ribosome biogenesis GTPa	0.667	0.748	0.388	5.9e-41
UNIPROTKB|Q3AC75	276	CHY_1427 "Ribosome biogenesis	0.664	0.760	0.353	1.4e-32
TIGR_CMR|CHY_1427	276	CHY_1427 "GTP-binding protein"	0.664	0.760	0.353	1.4e-32
UNIPROTKB|Q8EE00	313	rbgA "Ribosome biogenesis GTPa	0.620	0.626	0.330	2e-24

UNIPROTKB|Q5TKI5 OSJNBb0048I21.12 "Os05g0430400 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1070 (381.7 bits), Expect = 3.0e-108, P = 3.0e-108
 Identities = 203/242 (83%), Positives = 220/242 (90%)

Query:    75 EAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL 134
             E Y++E  W +LDADL YWT+SLRPVQWYPGHIAKTEKELK+QLKLMDVVIEVRDARIPL
Sbjct:    70 EDYDKEMFWDNLDADLRYWTRSLRPVQWYPGHIAKTEKELKEQLKLMDVVIEVRDARIPL 129

Query:   135 STTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLS 194
             +T+HP MD WLGNRKRI+V+NREDM+S  DRNAWA+YFA QGTKV++SNGQLGMGTMKL 
Sbjct:   130 ATSHPKMDAWLGNRKRIIVMNREDMVSNEDRNAWASYFANQGTKVVYSNGQLGMGTMKLG 189

Query:   195 RLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV 254
             R+AK+LAS VN KRR KGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 
Sbjct:   190 RMAKSLASTVNTKRREKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRE 249

Query:   255 LKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIP 314
             LKWVRFG DLE LDSPGI+PMRISDQ AAIKLAICDDIGERSYD ADVAAILVQ+L R P
Sbjct:   250 LKWVRFGSDLELLDSPGILPMRISDQTAAIKLAICDDIGERSYDFADVAAILVQLLVRHP 309

Query:   315 TV 316
              V
Sbjct:   310 AV 311

GO:0003924 "GTPase activity" evidence=IBA

GO:0006184 "GTP catabolic process" evidence=IBA

GO:0042254 "ribosome biogenesis" evidence=IBA

TAIR|locus:2140270 EMB3129 "AT4G02790" [Arabidopsis thaliana (taxid:3702)]

 Score = 1027 (366.6 bits), Expect = 1.1e-103, P = 1.1e-103
 Identities = 198/266 (74%), Positives = 223/266 (83%)

Query:    52 IQTVGGKQSSWHXXXXXXXXXX-IEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKT 110
             IQ VGGK  +             +EA E+E DW +L++D+  WT++LRPVQWYPGHI KT
Sbjct:    47 IQIVGGKDLNLDVTRKDDSIGFKLEANEDEIDWMNLESDIRLWTRALRPVQWYPGHIMKT 106

Query:   111 EKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWAT 170
             EKEL++QLKLMDVVIEVRDARIPLSTTHP MD WLGNRKRILVLNREDMIS  DRN WA 
Sbjct:   107 EKELREQLKLMDVVIEVRDARIPLSTTHPKMDAWLGNRKRILVLNREDMISNDDRNDWAR 166

Query:   171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGK 230
             YFAKQG KVIF+NG+LGMG MKL RLAK+LA DVN KRR KGLLPR+VRAGI+GYPNVGK
Sbjct:   167 YFAKQGIKVIFTNGKLGMGAMKLGRLAKSLAGDVNGKRREKGLLPRSVRAGIIGYPNVGK 226

Query:   231 SSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICD 290
             SSLINRLLKR++C AAPRPGVTR +KWV+ GKDL+ LDSPG++PMRI DQAAAIKLAICD
Sbjct:   227 SSLINRLLKRKICAAAPRPGVTREMKWVKLGKDLDLLDSPGMLPMRIDDQAAAIKLAICD 286

Query:   291 DIGERSYDVADVAAILVQMLARIPTV 316
             DIGE++YD  DVA ILVQMLARIP V
Sbjct:   287 DIGEKAYDFTDVAGILVQMLARIPEV 312

GO:0005525 "GTP binding" evidence=IEA;ISS;IBA

GO:0008150 "biological_process" evidence=ND

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

UNIPROTKB|Q7NEL3 glr3866 "Ribosome biogenesis GTPase A" [Gloeobacter violaceus PCC 7421 (taxid:251221)]

 Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
 Identities = 100/211 (47%), Positives = 142/211 (67%)

Query:   100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
             +QWYPGHIAK  ++L +QLK +D+V+EV DARI  S+ H  + +  G R R++VLNR DM
Sbjct:     9 IQWYPGHIAKARRQLAEQLKQVDLVLEVLDARIAHSSRHDEIQKLAGERPRLVVLNRADM 68

Query:   160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVR 219
             I      +W  +FA +G     +N Q G G   + + A+  A  VN +R  +G+ PRAVR
Sbjct:    69 IPQGMLRSWLKWFAARGEAAYPTNAQNGDGVRAVLKAAQQGAVAVNQRRAGRGMRPRAVR 128

Query:   220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISD 279
               ++G+PNVGKS+LINRL+ +R   +A +PGVTR L+WVR    ++ LDSPGI+P R++D
Sbjct:   129 VAVIGFPNVGKSALINRLVGKRAVESAAKPGVTRALRWVRIADVIDLLDSPGILPPRLND 188

Query:   280 QAAAIKLAICDDIGERSYDVADVAAILVQML 310
             Q AA KLAICDDIG+ +Y  + VA +  ++L
Sbjct:   189 QRAAAKLAICDDIGQAAYTTSRVATLAAELL 219

GO:0003924 "GTPase activity" evidence=IBA

GO:0006184 "GTP catabolic process" evidence=IBA

GO:0042254 "ribosome biogenesis" evidence=IBA

UNIPROTKB|Q720E9 LMOf2365_1290 "Ribosome biogenesis GTPase A" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 83/213 (38%), Positives = 138/213 (64%)

Query:   100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
             +QW+PGH+AK  +E+ ++LKL+DV+ E+ DARIPLS+++P++++ +  ++R+++LN+ D 
Sbjct:     3 IQWFPGHMAKARREVTEKLKLVDVIFELVDARIPLSSSNPMLEEIIHQKRRVIILNKADT 62

Query:   160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVR 219
                     W  YFA++G   +  N Q G G  K+ + A+ L ++   + RSKG+ PRA+R
Sbjct:    63 ADEKTTKEWIDYFAEKGLPAVAVNAQEGKGLFKIEQAAEKLMAEKFDRLRSKGMKPRAIR 122

Query:   220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISD 279
             A I+G PNVGKS+LINRL K+ +     +PGVT+  +W++ GK LE LD+PGI+  +  D
Sbjct:   123 AMILGIPNVGKSTLINRLAKKNIARTGNKPGVTKAQQWIKVGKTLELLDTPGILWPKFED 182

Query:   280 QAAAIKLAICDDIGERSYDVADVAAILVQMLAR 312
             Q    KLA+   I +    + ++A   ++ L +
Sbjct:   183 QEIGYKLALTGAIKDDLLQMEEIAGYGLRFLEK 215

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q81WJ8 BAS3689 "Ribosome biogenesis GTPase A" [Bacillus anthracis (taxid:1392)]

 Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
 Identities = 82/213 (38%), Positives = 135/213 (63%)

Query:   100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
             +QW+PGH+AK  +++ ++LKL+DVVIE+ DAR+PLS+ +P++D+ + ++ R++VLN+ DM
Sbjct:     3 IQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADM 62

Query:   160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVR 219
                     W  YF ++G   I  N Q G G  +++   K L  +   K  +KG+ PR +R
Sbjct:    63 ADDRLTKQWIAYFKEKGHMAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRVIR 122

Query:   220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISD 279
             A IVG PNVGKS+LIN+L K+ +     RPGVT   +W++ GK++E LD+PGI+  +  D
Sbjct:   123 ALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWPKFED 182

Query:   280 QAAAIKLAICDDIGERSYDVADVAAILVQMLAR 312
             +   ++LA    I +   ++ DVA   ++ + +
Sbjct:   183 ELVGLRLATTGAIKDSILNLQDVAVYALRFMEK 215

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_3976 BA_3976 "GTPase family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
 Identities = 82/213 (38%), Positives = 135/213 (63%)

Query:   100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
             +QW+PGH+AK  +++ ++LKL+DVVIE+ DAR+PLS+ +P++D+ + ++ R++VLN+ DM
Sbjct:     3 IQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADM 62

Query:   160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVR 219
                     W  YF ++G   I  N Q G G  +++   K L  +   K  +KG+ PR +R
Sbjct:    63 ADDRLTKQWIAYFKEKGHMAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRVIR 122

Query:   220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISD 279
             A IVG PNVGKS+LIN+L K+ +     RPGVT   +W++ GK++E LD+PGI+  +  D
Sbjct:   123 ALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWPKFED 182

Query:   280 QAAAIKLAICDDIGERSYDVADVAAILVQMLAR 312
             +   ++LA    I +   ++ DVA   ++ + +
Sbjct:   183 ELVGLRLATTGAIKDSILNLQDVAVYALRFMEK 215

GO:0003924 "GTPase activity" evidence=ISS

GO:0005525 "GTP binding" evidence=ISS

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|O31743 rbgA "Ribosome biogenesis GTPase A" [Bacillus subtilis subsp. subtilis str. 168 (taxid:224308)]

 Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
 Identities = 82/211 (38%), Positives = 134/211 (63%)

Query:   100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
             +QW+PGH+AK  +E+ ++LKL+D+V E+ DARIP+S+ +P+++  L N+ RI++LN+ D 
Sbjct:     3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADK 62

Query:   160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVR 219
                A    W  +F  QG + +  N   G G  ++   +K +  +   + R+KG+ PRA+R
Sbjct:    63 ADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIR 122

Query:   220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISD 279
             A I+G PNVGKS+LINRL K+ +     RPG+T   +WV+ GK+LE LD+PGI+  +  D
Sbjct:   123 ALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFED 182

Query:   280 QAAAIKLAICDDIGERSYDVADVAAILVQML 310
             +   ++LA+   I +   ++ DVA   ++ L
Sbjct:   183 ELVGLRLAVTGAIKDSIINLQDVAVFGLRFL 213

GO:0003924 "GTPase activity" evidence=IBA

GO:0006184 "GTP catabolic process" evidence=IBA

GO:0042254 "ribosome biogenesis" evidence=IBA

UNIPROTKB|Q3AC75 CHY_1427 "Ribosome biogenesis GTPase A" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 75/212 (35%), Positives = 123/212 (58%)

Query:   100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
             + WYPGH+ KT+K L  Q+KL+DVV+E+RDARIPLS+ +P +++   N+ RI++ N++D+
Sbjct:     2 INWYPGHMFKTKKALLAQVKLVDVVLEIRDARIPLSSKNPDIEEICKNKPRIVLFNKKDL 61

Query:   160 ISMADRNAWATYFA-KQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAV 218
               +             +G        +   G  ++  + + +      K   KGL PR +
Sbjct:    62 ADVEKTEEILKKLPWPEGVYYCLVESKATGGLKEVWNIIEKVYGQYKEKWSGKGLRPRPL 121

Query:   219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRIS 278
             R  +VG PNVGKS++INRLLKR +   A +PGVTR ++W++    LE +D+PG++  ++ 
Sbjct:   122 RGMVVGIPNVGKSTVINRLLKRSVKTGA-KPGVTRGVQWIKLSDKLELMDTPGVLWPKLG 180

Query:   279 DQAAAIKLAICDDIGERSYDVADVAAILVQML 310
             D    +KL     I +    V +VA  L+++L
Sbjct:   181 DMEVGLKLGATGSISDEVLPVIEVANWLLKIL 212

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CHY_1427 CHY_1427 "GTP-binding protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 75/212 (35%), Positives = 123/212 (58%)

Query:   100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
             + WYPGH+ KT+K L  Q+KL+DVV+E+RDARIPLS+ +P +++   N+ RI++ N++D+
Sbjct:     2 INWYPGHMFKTKKALLAQVKLVDVVLEIRDARIPLSSKNPDIEEICKNKPRIVLFNKKDL 61

Query:   160 ISMADRNAWATYFA-KQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAV 218
               +             +G        +   G  ++  + + +      K   KGL PR +
Sbjct:    62 ADVEKTEEILKKLPWPEGVYYCLVESKATGGLKEVWNIIEKVYGQYKEKWSGKGLRPRPL 121

Query:   219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRIS 278
             R  +VG PNVGKS++INRLLKR +   A +PGVTR ++W++    LE +D+PG++  ++ 
Sbjct:   122 RGMVVGIPNVGKSTVINRLLKRSVKTGA-KPGVTRGVQWIKLSDKLELMDTPGVLWPKLG 180

Query:   279 DQAAAIKLAICDDIGERSYDVADVAAILVQML 310
             D    +KL     I +    V +VA  L+++L
Sbjct:   181 DMEVGLKLGATGSISDEVLPVIEVANWLLKIL 212

GO:0005525 "GTP binding" evidence=ISS

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8EE00 rbgA "Ribosome biogenesis GTPase A" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 68/206 (33%), Positives = 112/206 (54%)

Query:   100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
             +QWYPGH+ K  KE+++ +  +D+VIEV DARIP S+ +P++ +  G++  I +LN+ D+
Sbjct:     3 IQWYPGHMHKARKEIEEAMPQVDLVIEVLDARIPYSSENPMVSKLRGDKPCIKLLNKSDL 62

Query:   160 ISMADRNAWATYFAK-QGTKVI-FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRA 217
                     W  Y  + QG K    +  Q GM  M L  L + L     V  R K    + 
Sbjct:    63 ADPEVTAQWIEYLEREQGVKATAITTLQPGMLKM-LPDLCRKL-----VPSRDK--TEKD 114

Query:   218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRI 277
             +R  I+G PNVGKS++IN L  R +      P VT+  + +     +   D+PGI+  ++
Sbjct:   115 IRTMIMGIPNVGKSTIINTLAGRVIAKTGNEPAVTKTQQRINLRNGIVLSDTPGILWPKV 174

Query:   278 SDQAAAIKLAICDDIGERSYDVADVA 303
              ++A++ +LA+   I + + +  DVA
Sbjct:   175 DNEASSYRLAVTGAIKDTAMEYEDVA 200

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_V1252	SubName- Full=Putative uncharacterized protein; (387 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00020856	hypothetical protein (483 aa)			•				•		0.725
	gw1.X.4400.1	hypothetical protein (451 aa)				•			•		0.709
	grail3.7955000101	Predicted protein (372 aa)	•								0.497
	eugene3.00031274	aminoacyl-tRNA ligase (EC-6.1.1.2) (404 aa)	•			•					0.451
	eugene3.160500001	Predicted protein (113 aa)	•								0.451
	fgenesh4_pg.C_scaffold_1424000002	hypothetical protein (780 aa)	•								0.439
	gw1.XVI.341.1	hypothetical protein (185 aa)	•			•					0.402

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	316
PRK09563	287	PRK09563, rbgA, GTPase YlqF; Reviewed	1e-97
TIGR03596	276	TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-bi	5e-91
cd01856	171	cd01856, YlqF, Circularly permuted YlqF GTPase	9e-77
COG1161	322	COG1161, COG1161, Predicted GTPases [General funct	4e-65
cd04178	171	cd04178, Nucleostemin_like, A circularly permuted	2e-30
cd01859	157	cd01859, MJ1464, An uncharacterized, circularly pe	3e-30
cd01849	146	cd01849, YlqF_related_GTPase, Circularly permuted	6e-30
cd01858	157	cd01858, NGP_1, A novel nucleolar GTP-binding prot	4e-22
cd01857	140	cd01857, HSR1_MMR1, A circularly permuted subfamil	9e-19
pfam01926	117	pfam01926, MMR_HSR1, 50S ribosome-binding GTPase	1e-16
cd01894	157	cd01894, EngA1, EngA1 GTPase contains the first do	9e-11
COG1160	444	COG1160, COG1160, Predicted GTPases [General funct	3e-10
TIGR03594	429	TIGR03594, GTPase_EngA, ribosome-associated GTPase	7e-10
TIGR03594	429	TIGR03594, GTPase_EngA, ribosome-associated GTPase	1e-09
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	1e-09
COG1160	444	COG1160, COG1160, Predicted GTPases [General funct	2e-09
cd00880	161	cd00880, Era_like, E	4e-09
PRK00093	435	PRK00093, PRK00093, GTP-binding protein Der; Revie	4e-09
cd01895	174	cd01895, EngA2, EngA2 GTPase contains the second d	2e-08
PRK00093	435	PRK00093, PRK00093, GTP-binding protein Der; Revie	5e-08
TIGR03597	360	TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase	3e-07
cd01855	191	cd01855, YqeH, Circularly permuted YqeH GTPase	5e-07
cd04163	168	cd04163, Era, E	1e-06
PRK03003	472	PRK03003, PRK03003, GTP-binding protein Der; Revie	3e-06
PRK09518	712	PRK09518, PRK09518, bifunctional cytidylate kinase	3e-06
cd01876	170	cd01876, YihA_EngB, YihA (EngB) GTPase family	3e-06
cd09912	180	cd09912, DLP_2, Dynamin-like protein including dyn	4e-06
COG0218	200	COG0218, COG0218, Predicted GTPase [General functi	6e-06
cd04164	159	cd04164, trmE, trmE is a tRNA modification GTPase	9e-06
COG1159	298	COG1159, Era, GTPase [General function prediction	1e-05
cd01881	167	cd01881, Obg_like, Obg-like family of GTPases cons	2e-05
COG0370	653	COG0370, FeoB, Fe2+ transport system protein B [In	6e-05
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	7e-05
cd01898	170	cd01898, Obg, Obg GTPase	8e-05
PRK00089	292	PRK00089, era, GTPase Era; Reviewed	1e-04
PRK05291	449	PRK05291, trmE, tRNA modification GTPase TrmE; Rev	1e-04
TIGR00436	270	TIGR00436, era, GTP-binding protein Era	2e-04
cd01879	159	cd01879, FeoB, Ferrous iron transport protein B (F	2e-04
COG1163	365	COG1163, DRG, Predicted GTPase [General function p	3e-04
TIGR02729	329	TIGR02729, Obg_CgtA, Obg family GTPase CgtA	3e-04
PRK12299	335	PRK12299, obgE, GTPase CgtA; Reviewed	4e-04
PTZ00258	390	PTZ00258, PTZ00258, GTP-binding protein; Provision	4e-04
COG0486	454	COG0486, ThdF, Predicted GTPase [General function	4e-04
cd01897	167	cd01897, NOG, Nucleolar GTP-binding protein (NOG)	4e-04
PRK12297	424	PRK12297, obgE, GTPase CgtA; Reviewed	5e-04
COG0536	369	COG0536, Obg, Predicted GTPase [General function p	5e-04
TIGR00437	591	TIGR00437, feoB, ferrous iron transporter FeoB	7e-04
PRK09518	712	PRK09518, PRK09518, bifunctional cytidylate kinase	0.001
cd01896	233	cd01896, DRG, Developmentally Regulated GTP-bindin	0.001
cd01878	204	cd01878, HflX, HflX GTPase family	0.001
PRK15494	339	PRK15494, era, GTPase Era; Provisional	0.001
pfam02421	190	pfam02421, FeoB_N, Ferrous iron transport protein	0.001
TIGR03598	178	TIGR03598, GTPase_YsxC, ribosome biogenesis GTP-bi	0.002
cd01854	211	cd01854, YjeQ_EngC, Ribosomal interacting GTPase Y	0.003
PRK03003	472	PRK03003, PRK03003, GTP-binding protein Der; Revie	0.004

>gnl|CDD|236570 PRK09563, rbgA, GTPase YlqF; Reviewed

 Score =  288 bits (741), Expect = 1e-97
 Identities = 94/210 (44%), Positives = 143/210 (68%)

Query: 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMI 160
           QW+PGH+AK  +E+K+ LKL+DVVIEV DARIPLS+ +P++D+ +GN+ R+L+LN+ D+ 
Sbjct: 5   QWFPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIGNKPRLLILNKSDLA 64

Query: 161 SMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRA 220
                  W  YF +QG K +  N + G G  K+ + AK L  + N +R++KG+ PRA+RA
Sbjct: 65  DPEVTKKWIEYFEEQGIKALAINAKKGQGVKKILKAAKKLLKEKNERRKAKGMRPRAIRA 124

Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQ 280
            I+G PNVGKS+LINRL  +++     RPGVT+  +W++ GK LE LD+PGI+  ++ DQ
Sbjct: 125 MIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLGKGLELLDTPGILWPKLEDQ 184

Query: 281 AAAIKLAICDDIGERSYDVADVAAILVQML 310
              +KLA+   I + + D+ +VA   ++ L
Sbjct: 185 EVGLKLALTGAIKDEALDLEEVAIFALEYL 214

Length = 287

>gnl|CDD|213833 TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-binding protein YlqF

 Score =  272 bits (697), Expect = 5e-91
 Identities = 95/210 (45%), Positives = 139/210 (66%)

Query: 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMI 160
           QW+PGH+AK  +E+K++LKL+DVVIEV DARIPLS+ +P++D+  GN+ R++VLN+ D+ 
Sbjct: 2   QWFPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRGNKPRLIVLNKADLA 61

Query: 161 SMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRA 220
             A    W  YF ++G K +  N + G G  K+ + AK L  + N K ++KGLL R +RA
Sbjct: 62  DPAVTKQWLKYFEEKGIKALAINAKKGKGVKKIIKAAKKLLKEKNEKLKAKGLLNRPIRA 121

Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQ 280
            IVG PNVGKS+LINRL  +++     RPGVT+  +W++    LE LD+PGI+  +  DQ
Sbjct: 122 MIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLSDGLELLDTPGILWPKFEDQ 181

Query: 281 AAAIKLAICDDIGERSYDVADVAAILVQML 310
              +KLA    I + + D+ DVA  L++ L
Sbjct: 182 EVGLKLAATGAIKDEALDLEDVALFLLEYL 211

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members [Protein synthesis, Other]. Length = 276

>gnl|CDD|206749 cd01856, YlqF, Circularly permuted YlqF GTPase

 Score =  231 bits (592), Expect = 9e-77
 Identities = 87/171 (50%), Positives = 122/171 (71%), Gaps = 1/171 (0%)

Query: 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMIS 161
           W+PGH+AK  +++K++LKL+DVVIEVRDARIPLS+ +P +D+ LGN+ R++VLN+ D+  
Sbjct: 1   WFPGHMAKALRQIKEKLKLVDVVIEVRDARIPLSSRNPDLDKILGNKPRLIVLNKADLAD 60

Query: 162 MADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAG 221
            A    W  YF  QG  V+F N + G G  KL + AK L  + N K ++KGLLPR +RA 
Sbjct: 61  PAKTKKWLKYFKSQGEPVLFVNAKNGKGVKKLLKKAKKLLKE-NEKLKAKGLLPRPLRAM 119

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGI 272
           +VG PNVGKS+LINRL  +++     +PGVTR  +W+R G ++E LD+PGI
Sbjct: 120 VVGIPNVGKSTLINRLRGKKVAKVGNKPGVTRGQQWIRIGPNIELLDTPGI 170

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in all eukaryotes as well as a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga). Length = 171

>gnl|CDD|224083 COG1161, COG1161, Predicted GTPases [General function prediction only]

 Score =  207 bits (528), Expect = 4e-65
 Identities = 82/222 (36%), Positives = 132/222 (59%), Gaps = 2/222 (0%)

Query: 93  WTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRIL 152
             K    +QW+PGH+ K +++LK+ LK +DVV+EV DAR PL T +P +++ +  + ++L
Sbjct: 7   RLKHYNKIQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVKEKPKLL 66

Query: 153 VLNREDMISMADRNAWATYFAKQ-GTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSK 211
           VLN+ D+        W  YF K+ G K IF + +   G  K+ +  + L+ +   + + K
Sbjct: 67  VLNKADLAPKEVTKKWKKYFKKEEGIKPIFVSAKSRQGGKKIRKALEKLSEEKIKRLKKK 126

Query: 212 GLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPG 271
           GLL R +R G+VGYPNVGKS+LINRLL +++   + RPG T+ ++W++    +  LD+PG
Sbjct: 127 GLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDGIYLLDTPG 186

Query: 272 IIPMRI-SDQAAAIKLAICDDIGERSYDVADVAAILVQMLAR 312
           IIP +   D+   +KLA   +I +      +VA  L+  L  
Sbjct: 187 IIPPKFDDDELVLLKLAPKGEIKDPVLPADEVAERLLGGLLI 228

Length = 322

>gnl|CDD|206753 cd04178, Nucleostemin_like, A circularly permuted subfamily of the Ras GTPases

 Score =  113 bits (284), Expect = 2e-30
 Identities = 58/172 (33%), Positives = 87/172 (50%), Gaps = 22/172 (12%)

Query: 122 DVVIEVRDARIPLSTTHPLMDQW---LGNRKR-ILVLNREDMISMADRNAWATYFAKQGT 177
           DV++EV DAR PL    P +++    LG  K+ +LVLN+ D++   +   W  Y   +  
Sbjct: 1   DVILEVLDARDPLGCRCPQVERAVLVLGPNKKLVLVLNKIDLVPKENVEKWLKYLRNEFP 60

Query: 178 KVIF------SNGQLGMGTMK------LSRLAKALASDVNVK-----RRSKGLLPRAVRA 220
            V F          L   + K      L   +  L +D  +K      R+KG+   ++  
Sbjct: 61  TVAFKASTQQQKKNLSRKSKKVKASDDLLSSSACLGADALLKLLKNYARNKGI-KTSITV 119

Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGI 272
           G+VGYPNVGKSS+IN L + R C     PGVT+ ++ V   K ++ LDSPG+
Sbjct: 120 GVVGYPNVGKSSVINSLKRSRACNVGATPGVTKSMQEVHLDKHVKLLDSPGV 171

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the protein. Length = 171

>gnl|CDD|206752 cd01859, MJ1464, An uncharacterized, circularly permuted subfamily of the Ras GTPases

 Score =  111 bits (280), Expect = 3e-30
 Identities = 53/160 (33%), Positives = 80/160 (50%), Gaps = 16/160 (10%)

Query: 118 LKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATYFAKQ 175
           +K  DVV+EV DAR P  T    +++      +K I+VLN+ D++       W   F  +
Sbjct: 9   IKEADVVLEVVDARDPELTRSRKLERMALELGKKLIIVLNKADLVPREVLEKWKEVFESE 68

Query: 176 GTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLIN 235
           G  V++ + +  +GT  L R  K LA D            + V  G+VGYP VGKSS+IN
Sbjct: 69  GLPVVYVSARERLGTRILRRTIKELAIDG-----------KPVIVGVVGYPKVGKSSIIN 117

Query: 236 RLLKRRMCPAAP---RPGVTRVLKWVRFGKDLEFLDSPGI 272
            L  R     +P    PG T+ ++ VR    +  +D+PG+
Sbjct: 118 ALKGRHSASTSPIPGSPGYTKGIQLVRIDSKIYLIDTPGV 157

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. Length = 157

>gnl|CDD|206746 cd01849, YlqF_related_GTPase, Circularly permuted YlqF-related GTPases

 Score =  110 bits (278), Expect = 6e-30
 Identities = 54/154 (35%), Positives = 81/154 (52%), Gaps = 11/154 (7%)

Query: 122 DVVIEVRDARIPLSTTHPLMDQ--WLGNRKRILVLNREDMISMADRNAWATYFAK-QGTK 178
           DVV+EV DAR PLS+ +P ++      N+K I+VLN+ D++       W    ++  GTK
Sbjct: 1   DVVVEVVDARDPLSSRNPDIEVLINEKNKKLIMVLNKADLVPKEVLRKWVAELSELYGTK 60

Query: 179 VIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLL 238
             F +   G G +KL             K++ K    + +R G+VG PNVGKSS IN LL
Sbjct: 61  TFFISATNGQGILKLKAEIT--------KQKLKLKYKKGIRVGVVGLPNVGKSSFINALL 112

Query: 239 KRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGI 272
            +        PG T++ + V+  K++   D+PGI
Sbjct: 113 NKFKLKVGSIPGTTKLQQDVKLDKEIYLYDTPGI 146

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. Length = 146

>gnl|CDD|206751 cd01858, NGP_1, A novel nucleolar GTP-binding protein, circularly permuted subfamily of the Ras GTPases

 Score = 90.1 bits (224), Expect = 4e-22
 Identities = 50/159 (31%), Positives = 78/159 (49%), Gaps = 19/159 (11%)

Query: 122 DVVIEVRDARIPLSTTHPLMDQWLGNRKR----ILVLNREDMISMADRNAWATYFAKQGT 177
           DV+I+V DAR P+ T    ++++L   K     I VLN+ D++       W    +K+  
Sbjct: 10  DVIIQVLDARDPMGTRCKHVEKYLRKEKPHKHLIFVLNKCDLVPTWVTKRWVKVLSKEYP 69

Query: 178 KVIFS---NGQLGMGT-MKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSL 233
            + F        G G  + L R    L SD            + +  G +GYPNVGKSS+
Sbjct: 70  TLAFHASITNPFGKGALINLLRQFAKLHSD-----------KKQISVGFIGYPNVGKSSV 118

Query: 234 INRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGI 272
           IN L  +++C  AP PG T+V +++   K +  +D PG+
Sbjct: 119 INTLRSKKVCKVAPIPGETKVWQYITLMKRIYLIDCPGV 157

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. Length = 157

>gnl|CDD|206750 cd01857, HSR1_MMR1, A circularly permuted subfamily of the Ras GTPases

 Score = 80.7 bits (200), Expect = 9e-19
 Identities = 47/156 (30%), Positives = 77/156 (49%), Gaps = 34/156 (21%)

Query: 122 DVVIEVRDARIPLSTTHPLMDQWL----GNRKRILVLNREDMISMADRNAWATYFAKQGT 177
           DVV+++ DAR PL    P +++++     +++ +L+LN+ D+++   R AWA YF K+G 
Sbjct: 13  DVVVQIVDARNPLFFRCPDLEKYVKEVDPSKENVLLLNKADLVTEEQRKAWARYFKKEGI 72

Query: 178 KVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRL 237
            V+F            S L +A                     G+VGYPNVGKSSLIN L
Sbjct: 73  VVLFF-----------SALNEATI-------------------GLVGYPNVGKSSLINAL 102

Query: 238 LKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGII 273
           +  +    +  PG T+  + +     +   D PG++
Sbjct: 103 VGSKKVSVSSTPGKTKHFQTIFLEPGITLCDCPGLV 138

Human HSR1 is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N-terminus. Length = 140

>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase

 Score = 74.3 bits (183), Expect = 1e-16
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF--GKDLEFLDSPGIIP 274
           R  +VG PNVGKS+LIN L   ++   +  PG TR         G+ +  +D+PG+I 
Sbjct: 1   RVALVGRPNVGKSTLINALTGAKVAIVSDYPGTTRDPILGVLGLGRQIILVDTPGLIE 58

The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117

>gnl|CDD|206681 cd01894, EngA1, EngA1 GTPase contains the first domain of EngA

 Score = 59.0 bits (144), Expect = 9e-11
 Identities = 32/78 (41%), Positives = 41/78 (52%), Gaps = 14/78 (17%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR-----VLKWVRFGKDLEFLDSPGIIPM- 275
           IVG PNVGKS+L NRL  RR    +  PGVTR       +W   G++   +D+ GI P  
Sbjct: 2   IVGRPNVGKSTLFNRLTGRRDAIVSDTPGVTRDRKYGEAEW--GGREFILIDTGGIEPDD 59

Query: 276 -----RISDQA-AAIKLA 287
                 I +QA  AI+ A
Sbjct: 60  EGISKEIREQAEIAIEEA 77

This EngA1 subfamily CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. Length = 157

>gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only]

 Score = 60.7 bits (148), Expect = 3e-10
 Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 17/160 (10%)

Query: 122 DVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATYFAKQGTKV 179
           DV++ V D R  ++     + + L    +  ILV+N+ D +   +    A  F   G   
Sbjct: 85  DVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAEEL---AYEFYSLGFGE 141

Query: 180 IF----SNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLIN 235
                  +G+ G+G + L  + + L  D   +   +      ++  I+G PNVGKSSLIN
Sbjct: 142 PVPISAEHGR-GIGDL-LDAVLELLPPDEEEEEEEE---TDPIKIAIIGRPNVGKSSLIN 196

Query: 236 RLLKRRMCPAAPRPGVTR---VLKWVRFGKDLEFLDSPGI 272
            +L       +   G TR    +++ R G+    +D+ GI
Sbjct: 197 AILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGI 236

Length = 444

>gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA

 Score = 59.0 bits (144), Expect = 7e-10
 Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 14/78 (17%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR-----VLKWVRFGKDLEFLDSPGI---- 272
           IVG PNVGKS+L NRL  +R    +  PGVTR       +W   G++   +D+ GI    
Sbjct: 4   IVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEW--GGREFILIDTGGIEEDD 61

Query: 273 --IPMRISDQA-AAIKLA 287
             +  +I +QA  AI+ A
Sbjct: 62  DGLDKQIREQAEIAIEEA 79

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability [Protein synthesis, Other]. Length = 429

>gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA

 Score = 58.6 bits (143), Expect = 1e-09
 Identities = 46/163 (28%), Positives = 71/163 (43%), Gaps = 24/163 (14%)

Query: 122 DVVIEVRDARIPLSTTHPLMDQWLGNRKR----ILVLNREDMISMADRNAWATYFAKQG- 176
           DV++ V D R  L+     + +WL  RK     ILV N+ D          A  F   G 
Sbjct: 80  DVILFVVDGREGLTPEDEEIAKWL--RKSGKPVILVANKIDGKKEDAV---AAEFYSLGF 134

Query: 177 TKVIF---SNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSL 233
            + I     +G+ G+G + L  + + L  +   +    G     ++  I+G PNVGKS+L
Sbjct: 135 GEPIPISAEHGR-GIGDL-LDAILELLPEEEEEEEEEDG----PIKIAIIGRPNVGKSTL 188

Query: 234 INRLLKRRMCPAAPRPGVTR----VLKWVRFGKDLEFLDSPGI 272
           +N LL       +   G TR    +  + R GK    +D+ GI
Sbjct: 189 VNALLGEERVIVSDIAGTTRDSIDIP-FERNGKKYTLIDTAGI 230

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability [Protein synthesis, Other]. Length = 429

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 55.9 bits (135), Expect = 1e-09
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 5/73 (6%)

Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR-----VLKWVRFGKDLEFLDSPGIIPM 275
            +VG   VGKSSL+N LL   +   +  PG TR     V +  +    L  +D+PG+   
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDEF 60

Query: 276 RISDQAAAIKLAI 288
               +    +L +
Sbjct: 61  GGLGREELARLLL 73

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only]

 Score = 58.0 bits (141), Expect = 2e-09
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 7/58 (12%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR-----VLKWVRFGKDLEFLDSPGIIP 274
           IVG PNVGKS+L NRL  RR+   +  PGVTR       +W   G++   +D+ G+  
Sbjct: 8   IVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEW--LGREFILIDTGGLDD 63

Length = 444

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 54.6 bits (132), Expect = 4e-09
 Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 20/96 (20%)

Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF------GKDLEFLDSPGII- 273
            I G PNVGKSSL+N LL + +   +P PG TR    VR          +  +D+PG+  
Sbjct: 1   AIFGRPNVGKSSLLNALLGQNVGIVSPIPGTTRD--PVRKEWELLPLGPVVLIDTPGLDE 58

Query: 274 -----PMRIS------DQAAAIKLAICDDIGERSYD 298
                  R+       D+A  + L +  D+     +
Sbjct: 59  EGGLGRERVEEARQVADRADLVLLVVDSDLTPVEEE 94

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed

 Score = 57.0 bits (139), Expect = 4e-09
 Identities = 31/78 (39%), Positives = 41/78 (52%), Gaps = 14/78 (17%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR-----VLKWVRFGKDLEFLDSPGI---- 272
           IVG PNVGKS+L NRL  +R    A  PGVTR       +W   G++   +D+ GI    
Sbjct: 6   IVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEW--LGREFILIDTGGIEPDD 63

Query: 273 --IPMRISDQA-AAIKLA 287
                +I +QA  AI+ A
Sbjct: 64  DGFEKQIREQAELAIEEA 81

Length = 435

>gnl|CDD|206682 cd01895, EngA2, EngA2 GTPase contains the second domain of EngA

 Score = 52.8 bits (128), Expect = 2e-08
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 5/60 (8%)

Query: 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR----VLKWVRFGKDLEFLDSPGI 272
            ++  I+G PNVGKSSL+N LL       +   G TR    V  +   G+    +D+ GI
Sbjct: 2   PIKIAIIGRPNVGKSSLLNALLGEERVIVSDIAGTTRDSIDVP-FEYDGQKYTLIDTAGI 60

This EngA2 subfamily CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. Length = 174

>gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed

 Score = 53.5 bits (130), Expect = 5e-08
 Identities = 44/171 (25%), Positives = 71/171 (41%), Gaps = 41/171 (23%)

Query: 122 DVVIEVRDARIPLSTTHPLMD----QWLGNRKR----ILVLN----REDMISMADRNAWA 169
           DV++ V D R  L+      D    + L  RK     ILV+N     ++     +     
Sbjct: 82  DVILFVVDGRAGLTP----ADEEIAKIL--RKSNKPVILVVNKVDGPDEEADAYE----- 130

Query: 170 TYFAKQGTKVIF----SNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGY 225
             F   G    +     +G+ G+G + L  + + L  +       + +     +  I+G 
Sbjct: 131 --FYSLGLGEPYPISAEHGR-GIGDL-LDAILEELPEEEEEDEEDEPI-----KIAIIGR 181

Query: 226 PNVGKSSLINRLLKR-RMCPAAPRPGVTR--V-LKWVRFGKDLEFLDSPGI 272
           PNVGKSSLIN LL   R+   +   G TR  +   + R G+    +D+ GI
Sbjct: 182 PNVGKSSLINALLGEERVI-VSDIAGTTRDSIDTPFERDGQKYTLIDTAGI 231

Length = 435

>gnl|CDD|213834 TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase YqeH

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 41/151 (27%), Positives = 61/151 (40%), Gaps = 30/151 (19%)

Query: 145 LGNRKRILVLNREDMISMADR----NAWAT-YFAKQGTK---VIFSNGQLGMGTMKLSRL 196
           +G    +LV N+ D++  +        W      + G K   +I  + + G G  +L   
Sbjct: 88  VGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDK 147

Query: 197 AKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLK-----RRMCPAAPRPGV 251
            K   +  +V               +VG  NVGKSSLIN+LLK     + +   +P PG 
Sbjct: 148 IKKARNKKDVY--------------VVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGT 193

Query: 252 TRVLKWVRFGKDLEFLDSPGIIPMRISDQAA 282
           T  L  +         D+PGII    S Q A
Sbjct: 194 TLDLIEIPLDDGHSLYDTPGIIN---SHQMA 221

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli [Protein synthesis, Other]. Length = 360

>gnl|CDD|206748 cd01855, YqeH, Circularly permuted YqeH GTPase

 Score = 48.8 bits (117), Expect = 5e-07
 Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 11/62 (17%)

Query: 222 IVGYPNVGKSSLINRLLKR--------RMCPAA---PRPGVTRVLKWVRFGKDLEFLDSP 270
           +VG  NVGKS+LIN LLK          +       P PG T  L  +  G+  +  D+P
Sbjct: 130 VVGATNVGKSTLINALLKSNGGKVQAQALVQRLTVSPIPGTTLGLIKIPLGEGKKLYDTP 189

Query: 271 GI 272
           GI
Sbjct: 190 GI 191

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. Length = 191

>gnl|CDD|206726 cd04163, Era, E

 Score = 47.5 bits (114), Expect = 1e-06
 Identities = 22/61 (36%), Positives = 39/61 (63%), Gaps = 6/61 (9%)

Query: 219 RAG---IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV-LKWVRFGKD--LEFLDSPGI 272
           ++G   I+G PNVGKS+L+N L+ +++   +P+P  TR  ++ +    D  + F+D+PGI
Sbjct: 2   KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGI 61

Query: 273 I 273
            
Sbjct: 62  H 62

coli Ras-like protein (Era) is a multifunctional GTPase. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. Length = 168

>gnl|CDD|179525 PRK03003, PRK03003, GTP-binding protein Der; Reviewed

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 19/32 (59%), Positives = 23/32 (71%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253
           +VG PNVGKS+L+NR+L RR       PGVTR
Sbjct: 43  VVGRPNVGKSTLVNRILGRREAVVEDVPGVTR 74

Length = 472

>gnl|CDD|236546 PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der; Reviewed

 Score = 48.3 bits (115), Expect = 3e-06
 Identities = 20/32 (62%), Positives = 23/32 (71%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253
           IVG PNVGKS+L+NR+L RR       PGVTR
Sbjct: 280 IVGRPNVGKSTLVNRILGRREAVVEDTPGVTR 311

Length = 712

>gnl|CDD|206665 cd01876, YihA_EngB, YihA (EngB) GTPase family

 Score = 46.3 bits (111), Expect = 3e-06
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 222 IVGYPNVGKSSLINRLLKR-RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPG 271
             G  NVGKSSLIN L  R ++   +  PG T+++ +   G     +D PG
Sbjct: 4   FAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFNVGDKFRLVDLPG 54

The YihA (EngB) subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. Length = 170

>gnl|CDD|206739 cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins

 Score = 46.0 bits (110), Expect = 4e-06
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFG--KDLEFLDSPGI 272
           +VG  + GKS+L+N LL   + P    P  T V+  +R+G  K +  +D+PG+
Sbjct: 5   VVGEFSAGKSTLLNALLGEEVLPTGVTP-TTAVITVLRYGLLKGVVLVDTPGL 56

The dynamin family of large mechanochemical GTPases includes the classical dynamins and dynamin-like proteins (DLPs) that are found throughout the Eukarya. This family also includes bacterial DLPs. These proteins catalyze membrane fission during clathrin-mediated endocytosis. Dynamin consists of five domains; an N-terminal G domain that binds and hydrolyzes GTP, a middle domain (MD) involved in self-assembly and oligomerization, a pleckstrin homology (PH) domain responsible for interactions with the plasma membrane, GED, which is also involved in self-assembly, and a proline arginine rich domain (PRD) that interacts with SH3 domains on accessory proteins. To date, three vertebrate dynamin genes have been identified; dynamin 1, which is brain specific, mediates uptake of synaptic vesicles in presynaptic terminals; dynamin-2 is expressed ubiquitously and similarly participates in membrane fission; mutations in the MD, PH and GED domains of dynamin 2 have been linked to human diseases such as Charcot-Marie-Tooth peripheral neuropathy and rare forms of centronuclear myopathy. Dynamin 3 participates in megakaryocyte progenitor amplification, and is also involved in cytoplasmic enlargement and the formation of the demarcation membrane system. This family also includes mitofusins (MFN1 and MFN2 in mammals) that are involved in mitochondrial fusion. Dynamin oligomerizes into helical structures around the neck of budding vesicles in a GTP hydrolysis-dependent manner. Length = 180

>gnl|CDD|223296 COG0218, COG0218, Predicted GTPase [General function prediction only]

 Score = 46.1 bits (110), Expect = 6e-06
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 223 VGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFGKDLEFLDSPG 271
            G  NVGKSSLIN L  ++ +   +  PG T+++ +     +L  +D PG
Sbjct: 30  AGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPG 79

Length = 200

>gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase

 Score = 44.8 bits (107), Expect = 9e-06
 Identities = 26/64 (40%), Positives = 31/64 (48%), Gaps = 16/64 (25%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAA---PRPGVTR-VLKWVRFGKDLEFLDSPGIIPMRI 277
           I G PNVGKSSL+N L  R     A      G TR V++      DL      G IP+R+
Sbjct: 8   IAGKPNVGKSSLLNALAGR---DRAIVSDIAGTTRDVIE-EEI--DLG-----G-IPVRL 55

Query: 278 SDQA 281
            D A
Sbjct: 56  IDTA 59

TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. Length = 159

>gnl|CDD|224081 COG1159, Era, GTPase [General function prediction only]

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 3/60 (5%)

Query: 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR--VLKWVRFGKD-LEFLDSPGI 272
           ++    I+G PNVGKS+L+N L+ +++   +P+P  TR  +   V      + F+D+PGI
Sbjct: 5   KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGI 64

Length = 298

>gnl|CDD|206668 cd01881, Obg_like, Obg-like family of GTPases consist of five subfamilies: Obg, DRG, YyaF/YchF, Ygr210, and NOG1

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF----GKDLEFLDSPGIIP 274
           G+VG PNVGKS+L++  L       A  P  T       F    G D++ +D PG++ 
Sbjct: 1   GLVGLPNVGKSTLLS-ALTSAKVEIASYPFTTLEPNVGVFEFGDGVDIQIIDLPGLLD 57

The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to form one major branch of the Obg family and the Ygr210 and YchF subfamilies form another branch. No GEFs, GAPs, or GDIs for Obg have been identified. Length = 167

>gnl|CDD|223447 COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]

 Score = 44.2 bits (105), Expect = 6e-05
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGI 272
           + +   +VG PNVGK++L N L           PGVT   K  +    G ++E +D PG 
Sbjct: 2   KKLTVALVGNPNVGKTTLFNALTGANQ-KVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGT 60

Length = 653

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 42.0 bits (99), Expect = 7e-05
 Identities = 30/90 (33%), Positives = 40/90 (44%), Gaps = 8/90 (8%)

Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR---VLKWVRFGKDLEF--LDSPGII-- 273
            IVG PNVGKS+L+NRLL  ++     +PG TR          GK  +F  LD+ G    
Sbjct: 5   VIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDY 64

Query: 274 -PMRISDQAAAIKLAICDDIGERSYDVADV 302
             +R     A        DI     DV ++
Sbjct: 65  DAIRRLYYRAVESSLRVFDIVILVLDVEEI 94

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206685 cd01898, Obg, Obg GTPase

 Score = 42.0 bits (100), Expect = 8e-05
 Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 29/71 (40%)

Query: 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRP--------------GVTRVLKWVRFGKDLE 265
            G+VG PN GKS+L++ +       +  +P              GV      VR      
Sbjct: 3   VGLVGLPNAGKSTLLSAI-------SNAKPKIADYPFTTLVPNLGV------VRVDDGRS 49

Query: 266 FL--DSPGIIP 274
           F+  D PG+I 
Sbjct: 50  FVIADIPGLIE 60

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. Length = 170

>gnl|CDD|234624 PRK00089, era, GTPase Era; Reviewed

 Score = 42.7 bits (102), Expect = 1e-04
 Identities = 17/38 (44%), Positives = 27/38 (71%), Gaps = 3/38 (7%)

Query: 219 RAG---IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253
           ++G   IVG PNVGKS+L+N L+ +++   +P+P  TR
Sbjct: 4   KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTR 41

Length = 292

>gnl|CDD|235392 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed

 Score = 43.2 bits (103), Expect = 1e-04
 Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 6/35 (17%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAA---PRPGVTR 253
           I G PNVGKSSL+N LL       A      G TR
Sbjct: 220 IAGRPNVGKSSLLNALLGEE---RAIVTDIAGTTR 251

Length = 449

>gnl|CDD|129528 TIGR00436, era, GTP-binding protein Era

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR---VLKWVRFGKDLEFLDSPGI 272
              I+G PNVGKS+L+N+L  +++   +P+   TR             + F+D+PG 
Sbjct: 2   FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGF 58

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein [Protein synthesis, Other]. Length = 270

>gnl|CDD|206667 cd01879, FeoB, Ferrous iron transport protein B (FeoB) family

 Score = 40.5 bits (96), Expect = 2e-04
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 12/58 (20%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPR----PGVTRVLKWVRF---GKDLEFLDSPGI 272
           +VG PNVGK++L N L   R      +    PGVT   K   F   GK++E +D PG 
Sbjct: 2   LVGNPNVGKTTLFNALTGARQ-----KVGNWPGVTVEKKEGEFKLGGKEIEIVDLPGT 54

Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. Length = 159

>gnl|CDD|224085 COG1163, DRG, Predicted GTPase [General function prediction only]

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 22/103 (21%)

Query: 186 LGMGTMKLSRLAKALASDVNVKRRSKGLLPR-------AVRAGIVGYPNVGKSSLINRLL 238
           +G+   KL+ L + L      K +S G                +VG+P+VGKS+L+N+L 
Sbjct: 28  IGLLKAKLAELREELEKR---KSKSGGGGSGFAVKKSGDATVALVGFPSVGKSTLLNKLT 84

Query: 239 KRRMCPAA-------PRPGVTRVLKWVRFGKDLEFLDSPGIIP 274
             +   A        P PG   +L++   G  ++ LD PGII 
Sbjct: 85  NTKSEVADYPFTTLEPVPG---MLEYK--GAQIQLLDLPGIIE 122

Length = 365

>gnl|CDD|233986 TIGR02729, Obg_CgtA, Obg family GTPase CgtA

 Score = 41.6 bits (99), Expect = 3e-04
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 17/63 (26%)

Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGV------TRV--LKWVRFGKDLEFL--DSP 270
           G+VG PN GKS+LI+ +       +A +P +      T V  L  VR      F+  D P
Sbjct: 161 GLVGLPNAGKSTLISAV-------SAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIP 213

Query: 271 GII 273
           G+I
Sbjct: 214 GLI 216

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal [Protein synthesis, Other]. Length = 329

>gnl|CDD|237048 PRK12299, obgE, GTPase CgtA; Reviewed

 Score = 41.2 bits (98), Expect = 4e-04
 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 25/68 (36%)

Query: 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRP--------------GVTRVLKWVRFGKDLE 265
            G+VG PN GKS+LI+ +       +A +P              GV RV       K   
Sbjct: 161 VGLVGLPNAGKSTLISAV-------SAAKPKIADYPFTTLHPNLGVVRVDD----YKSFV 209

Query: 266 FLDSPGII 273
             D PG+I
Sbjct: 210 IADIPGLI 217

Length = 335

>gnl|CDD|240334 PTZ00258, PTZ00258, GTP-binding protein; Provisional

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 6/53 (11%)

Query: 197 AKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP 249
                  V + R    L     + GIVG PNVGKS+  N  L ++  PA   P
Sbjct: 6   KMEEEKKVLLGRPGNNL-----KMGIVGLPNVGKSTTFN-ALCKQQVPAENFP 52

Length = 390

>gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only]

 Score = 41.4 bits (98), Expect = 4e-04
 Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 10/61 (16%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR-VLKWVRFGKDLEFLDSPGIIPMRISDQ 280
           I+G PNVGKSSL+N LL R         G TR V++        E ++  G IP+R+ D 
Sbjct: 222 IIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIE--------EDINLNG-IPVRLVDT 272

Query: 281 A 281
           A
Sbjct: 273 A 273

Length = 454

>gnl|CDD|206684 cd01897, NOG, Nucleolar GTP-binding protein (NOG)

 Score = 39.9 bits (94), Expect = 4e-04
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 14/59 (23%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPA-APRPGVTR-------VLKWVRFGKDLEFLDSPGI 272
           I GYPNVGKSSL+N+L + +  P  AP P  T+         K++R+    + +D+PGI
Sbjct: 5   IAGYPNVGKSSLVNKLTRAK--PEVAPYPFTTKSLFVGHFDYKYLRW----QVIDTPGI 57

NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. Length = 167

>gnl|CDD|237046 PRK12297, obgE, GTPase CgtA; Reviewed

 Score = 41.2 bits (98), Expect = 5e-04
 Identities = 10/18 (55%), Positives = 16/18 (88%)

Query: 220 AGIVGYPNVGKSSLINRL 237
            G+VG+PNVGKS+L++ +
Sbjct: 161 VGLVGFPNVGKSTLLSVV 178

Length = 424

>gnl|CDD|223610 COG0536, Obg, Predicted GTPase [General function prediction only]

 Score = 41.0 bits (97), Expect = 5e-04
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 25/69 (36%)

Query: 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRP--------------GVTRVLKWVRFGKDLE 265
            G+VG PN GKS+L++ +       +A +P              GV RV      G+   
Sbjct: 162 VGLVGLPNAGKSTLLSAV-------SAAKPKIADYPFTTLVPNLGVVRVDG----GESFV 210

Query: 266 FLDSPGIIP 274
             D PG+I 
Sbjct: 211 VADIPGLIE 219

Length = 369

>gnl|CDD|232975 TIGR00437, feoB, ferrous iron transporter FeoB

 Score = 40.9 bits (96), Expect = 7e-04
 Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 224 GYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGI 272
           G PNVGKS+L N L           PGVT   K  +    G+D+E +D PGI
Sbjct: 1   GNPNVGKSTLFNALTGANQ-TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGI 51

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum [Transport and binding proteins, Cations and iron carrying compounds]. Length = 591

>gnl|CDD|236546 PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der; Reviewed

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 51/163 (31%), Positives = 77/163 (47%), Gaps = 14/163 (8%)

Query: 118 LKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNR-EDMISMADRNAWATYFAK 174
           + L D V+ V D ++ L++T   + + L    +  +L +N+ +D  S  D    A  F K
Sbjct: 352 VSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEYD----AAEFWK 407

Query: 175 QGTKVIFS-NGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAV-RAGIVGYPNVGKSS 232
            G    +  +   G G   L  L +AL S    ++ S  L P  + R  +VG PNVGKSS
Sbjct: 408 LGLGEPYPISAMHGRGVGDL--LDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSS 465

Query: 233 LINRLLKRRMCPAAPRPGVTR--VLKWVRF-GKDLEFLDSPGI 272
           L+N+L            G TR  V + V   G+D  F+D+ GI
Sbjct: 466 LLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGI 508

Length = 712

>gnl|CDD|206683 cd01896, DRG, Developmentally Regulated GTP-binding protein (DRG)

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 12/62 (19%)

Query: 219 RAGIVGYPNVGKSSLINRLLKRRMCPAA-------PRPGVTRVLKWVRFGKDLEFLDSPG 271
           R  +VG+P+VGKS+L+++L   +   AA         PGV    K    G  ++ LD PG
Sbjct: 2   RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGV-MEYK----GAKIQLLDLPG 56

Query: 272 II 273
           II
Sbjct: 57  II 58

The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. Length = 233

>gnl|CDD|206666 cd01878, HflX, HflX GTPase family

 Score = 39.0 bits (92), Expect = 0.001
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 8/51 (15%)

Query: 192 KLSRLAKALAS-----DVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRL 237
           ++++L K L       ++   RR +  +P      +VGY N GKS+L N L
Sbjct: 14  RIAKLRKELEKVKKQRELQRARRKRSGVPTV---ALVGYTNAGKSTLFNAL 61

HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. Length = 204

>gnl|CDD|185391 PRK15494, era, GTPase Era; Provisional

 Score = 39.7 bits (92), Expect = 0.001
 Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 3/75 (4%)

Query: 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR-VLKWVRFGKDLEFL--DSPGI 272
           + V   I+G PN GKS+L+NR++  ++    P+   TR ++  +   KD + +  D+PGI
Sbjct: 51  KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGI 110

Query: 273 IPMRISDQAAAIKLA 287
              + S + A ++ A
Sbjct: 111 FEPKGSLEKAMVRCA 125

Length = 339

>gnl|CDD|217025 pfam02421, FeoB_N, Ferrous iron transport protein B

 Score = 38.6 bits (91), Expect = 0.001
 Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 12/57 (21%)

Query: 223 VGYPNVGKSSLINRLLKRRMCPAAPR----PGVTRVLKWVRF---GKDLEFLDSPGI 272
           VG PNVGK++L N L   R           PGVT   K   F   G ++E +D PG 
Sbjct: 6   VGNPNVGKTTLFNALTGARQ-----HVGNWPGVTVEKKEGTFKYKGYEIEIVDLPGT 57

Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. Length = 190

>gnl|CDD|213835 TIGR03598, GTPase_YsxC, ribosome biogenesis GTP-binding protein YsxC/EngB

 Score = 37.8 bits (89), Expect = 0.002
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 7/54 (12%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPR----PGVTRVLKWVRFGKDLEFLDSPG 271
             G  NVGKSSLIN L  R+      R    PG T+++ +         +D PG
Sbjct: 23  FAGRSNVGKSSLINALTNRK---KLARTSKTPGRTQLINFFEVNDGFRLVDLPG 73

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes [Protein synthesis, Other]. Length = 178

>gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases

 Score = 38.1 bits (90), Expect = 0.003
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 18/88 (20%)

Query: 151 ILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRS 210
           ++VLN+ D++   +       + K G  V+  + + G G   L  L + L    +V    
Sbjct: 37  VIVLNKADLVDDEELEELLEIYEKLGYPVLAVSAKTGEG---LDELRELLKGKTSV---- 89

Query: 211 KGLLPRAVRAGIVGYPNVGKSSLINRLL 238
                      +VG   VGKS+L+N LL
Sbjct: 90  -----------LVGQSGVGKSTLLNALL 106

YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. Length = 211

>gnl|CDD|179525 PRK03003, PRK03003, GTP-binding protein Der; Reviewed

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 15/23 (65%), Positives = 18/23 (78%), Gaps = 2/23 (8%)

Query: 215 PRAVRAGIVGYPNVGKSSLINRL 237
           PR  R  +VG PNVGKSSL+N+L
Sbjct: 211 PR--RVALVGKPNVGKSSLLNKL 231

Length = 472

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	316
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	100.0
PRK09563	287	rbgA GTPase YlqF; Reviewed	100.0
COG1161	322	Predicted GTPases [General function prediction onl	100.0
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	100.0
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	100.0
KOG2484	435	consensus GTPase [General function prediction only	100.0
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	99.97
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	99.96
COG1160	444	Predicted GTPases [General function prediction onl	99.96
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	99.95
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	99.95
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	99.95
KOG2423	572	consensus Nucleolar GTPase [General function predi	99.94
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.94
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.93
PRK13796	365	GTPase YqeH; Provisional	99.93
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	99.92
PRK12289	352	GTPase RsgA; Reviewed	99.92
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.9
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.9
PRK12288	347	GTPase RsgA; Reviewed	99.88
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.87
PRK00098	298	GTPase RsgA; Reviewed	99.87
PRK00093	435	GTP-binding protein Der; Reviewed	99.86
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	99.86
PRK03003	472	GTP-binding protein Der; Reviewed	99.86
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.84
COG1162	301	Predicted GTPases [General function prediction onl	99.82
PRK01889	356	GTPase RsgA; Reviewed	99.73
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	99.65
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.49
COG0486	454	ThdF Predicted GTPase [General function prediction	99.49
COG1084	346	Predicted GTPase [General function prediction only	99.42
COG1159	298	Era GTPase [General function prediction only]	99.42
COG1160	444	Predicted GTPases [General function prediction onl	99.39
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.35
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.34
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.34
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.29
COG0218	200	Predicted GTPase [General function prediction only	99.28
COG2262	411	HflX GTPases [General function prediction only]	99.24
PLN00043	447	elongation factor 1-alpha; Provisional	99.23
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.2
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.19
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.17
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.16
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.16
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.16
PTZ00141	446	elongation factor 1- alpha; Provisional	99.15
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.15
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.13
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.13
COG2262	411	HflX GTPases [General function prediction only]	99.08
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.08
PRK12317	425	elongation factor 1-alpha; Reviewed	99.08
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.07
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.07
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.07
PRK12298	390	obgE GTPase CgtA; Reviewed	99.06
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.05
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.05
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.05
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.05
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.04
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.03
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.02
PRK11058	426	GTPase HflX; Provisional	99.02
PTZ00258	390	GTP-binding protein; Provisional	99.02
PRK09601	364	GTP-binding protein YchF; Reviewed	99.02
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.0
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.0
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.0
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.0
COG1163	365	DRG Predicted GTPase [General function prediction	98.99
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	98.98
PRK12736	394	elongation factor Tu; Reviewed	98.98
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	98.97
PRK15494	339	era GTPase Era; Provisional	98.96
PRK15467	158	ethanolamine utilization protein EutP; Provisional	98.96
CHL00071	409	tufA elongation factor Tu	98.96
PRK00089	292	era GTPase Era; Reviewed	98.95
TIGR00485	394	EF-Tu translation elongation factor TU. This align	98.95
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	98.95
cd00881	189	GTP_translation_factor GTP translation factor fami	98.94
KOG1249	572	consensus Predicted GTPases [General function pred	98.94
PLN03127	447	Elongation factor Tu; Provisional	98.94
PRK04213	201	GTP-binding protein; Provisional	98.92
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	98.92
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	98.91
COG1159	298	Era GTPase [General function prediction only]	98.88
PRK12299	335	obgE GTPase CgtA; Reviewed	98.88
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	98.88
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	98.87
PRK12296	500	obgE GTPase CgtA; Reviewed	98.87
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	98.87
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	98.87
PLN03126	478	Elongation factor Tu; Provisional	98.86
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	98.86
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	98.86
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	98.85
PRK12735	396	elongation factor Tu; Reviewed	98.85
PRK04000	411	translation initiation factor IF-2 subunit gamma;	98.85
PRK00049	396	elongation factor Tu; Reviewed	98.84
PRK12297	424	obgE GTPase CgtA; Reviewed	98.84
PRK03003	472	GTP-binding protein Der; Reviewed	98.84
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	98.84
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	98.83
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	98.82
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	98.82
COG3276	447	SelB Selenocysteine-specific translation elongatio	98.8
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	98.8
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	98.8
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	98.79
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	98.78
PRK09602	396	translation-associated GTPase; Reviewed	98.77
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	98.77
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	98.77
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	98.76
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	98.73
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	98.73
PRK05433	600	GTP-binding protein LepA; Provisional	98.73
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	98.73
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	98.72
cd01881	176	Obg_like The Obg-like subfamily consists of five w	98.71
COG0050	394	TufB GTPases - translation elongation factors [Tra	98.71
KOG0460	449	consensus Mitochondrial translation elongation fac	98.7
PRK15494	339	era GTPase Era; Provisional	98.7
PRK00089	292	era GTPase Era; Reviewed	98.7
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	98.69
cd01896	233	DRG The developmentally regulated GTP-binding prot	98.68
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	98.67
PRK09866	741	hypothetical protein; Provisional	98.67
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	98.66
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	98.65
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	98.65
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	98.65
COG0012	372	Predicted GTPase, probable translation factor [Tra	98.65
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	98.64
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	98.63
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	98.63
PRK12296	500	obgE GTPase CgtA; Reviewed	98.62
PRK00093	435	GTP-binding protein Der; Reviewed	98.62
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	98.61
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	98.61
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	98.61
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	98.6
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	98.6
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.59
COG3596	296	Predicted GTPase [General function prediction only	98.59
PRK12299	335	obgE GTPase CgtA; Reviewed	98.59
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	98.59
KOG0462	650	consensus Elongation factor-type GTP-binding prote	98.58
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	98.58
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.57
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	98.54
COG0486	454	ThdF Predicted GTPase [General function prediction	98.54
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	98.53
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	98.53
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	98.52
COG0536	369	Obg Predicted GTPase [General function prediction	98.52
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	98.52
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	98.51
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	98.5
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	98.5
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	98.49
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	98.49
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	98.49
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	98.49
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	98.49
PRK12298	390	obgE GTPase CgtA; Reviewed	98.48
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	98.48
KOG0410	410	consensus Predicted GTP binding protein [General f	98.48
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	98.48
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	98.47
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	98.46
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	98.45
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	98.45
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	98.45
cd01881	176	Obg_like The Obg-like subfamily consists of five w	98.45
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	98.44
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	98.44
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	98.44
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	98.44
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	98.43
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.43
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	98.43
PRK05306	787	infB translation initiation factor IF-2; Validated	98.42
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	98.42
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	98.42
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	98.42
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	98.42
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	98.4
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	98.4
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	98.4
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	98.4
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	98.4
CHL00189	742	infB translation initiation factor 2; Provisional	98.4
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	98.4
PRK13768	253	GTPase; Provisional	98.4
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	98.39
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	98.39
PLN03118	211	Rab family protein; Provisional	98.39
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	98.39
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	98.38
PRK10218	607	GTP-binding protein; Provisional	98.38
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	98.38
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	98.38
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	98.38
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	98.38
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	98.37
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	98.37
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	98.37
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	98.37
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	98.36
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	98.36
PLN00223	181	ADP-ribosylation factor; Provisional	98.36
smart00178	184	SAR Sar1p-like members of the Ras-family of small	98.35
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	98.35
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	98.35
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	98.35
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	98.34
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	98.34
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	98.34
PRK11058	426	GTPase HflX; Provisional	98.34
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	98.34
PTZ00099	176	rab6; Provisional	98.34
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	98.33
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	98.33
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	98.33
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	98.33
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	98.32
PRK12297	424	obgE GTPase CgtA; Reviewed	98.32
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	98.32
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	98.31
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	98.31
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	98.31
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	98.31
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	98.3
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	98.3
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	98.29
cd00881	189	GTP_translation_factor GTP translation factor fami	98.29
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	98.29
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	98.29
PRK12317	425	elongation factor 1-alpha; Reviewed	98.29
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	98.28
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	98.28
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	98.28
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	98.28
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	98.28
KOG1145	683	consensus Mitochondrial translation initiation fac	98.28
PRK00007	693	elongation factor G; Reviewed	98.27
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	98.27
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	98.27
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	98.27
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	98.27
PRK12739	691	elongation factor G; Reviewed	98.27
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	98.26
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	98.26
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	98.25
PTZ00133	182	ADP-ribosylation factor; Provisional	98.25
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	98.25
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	98.25
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	98.25
PRK04213	201	GTP-binding protein; Provisional	98.25
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	98.25
PTZ00369	189	Ras-like protein; Provisional	98.24
PRK15467	158	ethanolamine utilization protein EutP; Provisional	98.24
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	98.24
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	98.24
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	98.22
PRK04004	586	translation initiation factor IF-2; Validated	98.22
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	98.22
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	98.22
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	98.22
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	98.21
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	98.21
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	98.21
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	98.21
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	98.21
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	98.21
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	98.21
PRK14845	1049	translation initiation factor IF-2; Provisional	98.21
smart00178	184	SAR Sar1p-like members of the Ras-family of small	98.2
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	98.2
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	98.2
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	98.19
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	98.19
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	98.19
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	98.19
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	98.19
CHL00071	409	tufA elongation factor Tu	98.19
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	98.19
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	98.19
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	98.18
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	98.18
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	98.18
PLN03118	211	Rab family protein; Provisional	98.17
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	98.17
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	98.17
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	98.17
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	98.17
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	98.17
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	98.16
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	98.16
COG0218	200	Predicted GTPase [General function prediction only	98.15
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	98.15
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	98.15
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	98.15
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	98.15
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	98.15
COG2229	187	Predicted GTPase [General function prediction only	98.14
KOG2486	320	consensus Predicted GTPase [General function predi	98.14
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	98.14
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	98.14
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	98.14
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	98.14
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	98.14
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	98.13
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	98.13
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	98.12
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	98.12
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	98.12
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	98.11
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	98.11
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	98.11
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	98.11
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	98.1
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	98.1
PLN03108	210	Rab family protein; Provisional	98.09
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	98.09
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	98.09
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	98.09
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	98.09
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	98.09
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	98.08
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	98.08
PRK12740	668	elongation factor G; Reviewed	98.07
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	98.07
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	98.07
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	98.06
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	98.06
PRK05306	787	infB translation initiation factor IF-2; Validated	98.06
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	98.05
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	98.05
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	98.05
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	98.04
PRK12735	396	elongation factor Tu; Reviewed	98.04
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	98.03
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	98.03
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	98.02
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	98.02
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	98.02
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	98.02
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	98.01
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	98.01
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	98.01
KOG0410	410	consensus Predicted GTP binding protein [General f	98.01
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	98.01
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	98.01
PLN03110	216	Rab GTPase; Provisional	98.0
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	97.99
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	97.99
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	97.99
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	97.99
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	97.98
COG1217	603	TypA Predicted membrane GTPase involved in stress	97.98
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	97.98
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	97.97
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	97.97
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	97.97
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	97.97
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	97.96
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	97.96
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	97.96
PLN03110	216	Rab GTPase; Provisional	97.96
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	97.96
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	97.96
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	97.95
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	97.95
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	97.95
PLN03127	447	Elongation factor Tu; Provisional	97.95
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	97.94
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	97.93
PTZ00133	182	ADP-ribosylation factor; Provisional	97.93
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	97.93
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	97.92
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	97.92
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	97.91
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	97.91
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	97.91
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	97.9
KOG0461	522	consensus Selenocysteine-specific elongation facto	97.9
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	97.89
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	97.89
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	97.88
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	97.88
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	97.88
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	97.88
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	97.87
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	97.87
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	97.87
COG0536	369	Obg Predicted GTPase [General function prediction	97.86
PLN03108	210	Rab family protein; Provisional	97.86
PRK00049	396	elongation factor Tu; Reviewed	97.85
PTZ00369	189	Ras-like protein; Provisional	97.85
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	97.84
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	97.83
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	97.83
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	97.83
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	97.82
PRK12736	394	elongation factor Tu; Reviewed	97.81
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	97.8
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	97.8
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	97.8
PRK00741	526	prfC peptide chain release factor 3; Provisional	97.79
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	97.79
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	97.79
PLN00223	181	ADP-ribosylation factor; Provisional	97.79
TIGR00485	394	EF-Tu translation elongation factor TU. This align	97.78
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	97.78
COG1100	219	GTPase SAR1 and related small G proteins [General	97.77
cd04105	203	SR_beta Signal recognition particle receptor, beta	97.76
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	97.76
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	97.76
cd01896	233	DRG The developmentally regulated GTP-binding prot	97.76
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	97.76
CHL00189	742	infB translation initiation factor 2; Provisional	97.74
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	97.74
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	97.74
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	97.73
PRK07560	731	elongation factor EF-2; Reviewed	97.72
PRK00007	693	elongation factor G; Reviewed	97.72
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	97.7
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	97.69
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	97.69
PLN03126	478	Elongation factor Tu; Provisional	97.69
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	97.68
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	97.68
PRK12739	691	elongation factor G; Reviewed	97.67
PTZ00416	836	elongation factor 2; Provisional	97.67
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	97.66
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	97.66
PRK13351	687	elongation factor G; Reviewed	97.65
TIGR00503	527	prfC peptide chain release factor 3. This translat	97.64
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	97.63
PRK04004	586	translation initiation factor IF-2; Validated	97.63
PLN00116	843	translation elongation factor EF-2 subunit; Provis	97.62
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	97.62
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	97.61
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	97.59
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	97.58
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	97.58
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	97.58
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	97.58
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	97.58
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	97.57
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	97.56
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	97.56
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	97.55
PRK09866	741	hypothetical protein; Provisional	97.53
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	97.53
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	97.53
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	97.53
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	97.53
KOG0466	466	consensus Translation initiation factor 2, gamma s	97.52
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	97.51
COG5019	373	CDC3 Septin family protein [Cell division and chro	97.5
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	97.49
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	97.49
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	97.44
cd04105	203	SR_beta Signal recognition particle receptor, beta	97.44
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	97.43
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	97.43
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	97.42
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	97.41
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	97.4
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	97.39
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	97.35
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	97.34
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	97.33
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	97.3
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	97.3
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	97.3
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	97.26
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	97.25
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	97.23
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	97.21
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	97.2
PRK10218	607	GTP-binding protein; Provisional	97.19
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	97.17
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	97.17
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	97.15
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	97.13
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	97.13
KOG0090	238	consensus Signal recognition particle receptor, be	97.12
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	97.12
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	97.1
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	97.09
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	97.08
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	97.08

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=100.00  E-value=1.1e-41  Score=316.81  Aligned_cols=214  Identities=44%  Similarity=0.765  Sum_probs=192.5

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCEEEEEEccCCCChHhHHHHHHHHHhcCceE
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKV  179 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~~v  179 (316)
                      ++||||||.+..+++.+.++++|+||+|+|+|.|.+..++.+.+++.++|+++|+||+||++..+...|.+++.+.+..+
T Consensus         1 ~~WfpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~v   80 (276)
T TIGR03596         1 IQWFPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRGNKPRLIVLNKADLADPAVTKQWLKYFEEKGIKA   80 (276)
T ss_pred             CccChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHCCCCEEEEEEccccCCHHHHHHHHHHHHHcCCeE
Confidence            58999999999999999999999999999999999999999988888899999999999988776778888887666778


Q ss_pred             EEeccccccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEE
Q 021210          180 IFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR  259 (316)
Q Consensus       180 i~iSa~~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~  259 (316)
                      +++|++++.|+++|.+.+.++.+........++.....++++++|+||||||||||+|.+++.+.+++.||+|+..+++.
T Consensus        81 i~iSa~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~  160 (276)
T TIGR03596        81 LAINAKKGKGVKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIK  160 (276)
T ss_pred             EEEECCCcccHHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEE
Confidence            99999999999999988887765443333344444567899999999999999999999999899999999999999999


Q ss_pred             eCCcEEEEeCCCcccCCCCCHHHHHHHHhcccccccCcchHHHHHHHHHHHHcC
Q 021210          260 FGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARI  313 (316)
Q Consensus       260 ~~~~~~liDTPGi~~~~~~~~~~~~~La~~~~i~~~~~~~~~v~~~ll~~L~~~  313 (316)
                      ++.++.|+||||+..+...+.+.+.+|++++++.+..++..+++.++++.|.++
T Consensus       161 ~~~~~~l~DtPG~~~~~~~~~~~~~~l~~~g~i~~~~~~~~~~~~~~~~~l~~~  214 (276)
T TIGR03596       161 LSDGLELLDTPGILWPKFEDQEVGLKLAATGAIKDEALDLEDVALFLLEYLLEH  214 (276)
T ss_pred             eCCCEEEEECCCcccCCCCchHHHHHHHHhCCcccccCChHHHHHHHHHHHHhh
Confidence            988999999999999999999999999999999999999999999999999774

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=100.00  E-value=1.5e-41  Score=317.79  Aligned_cols=215  Identities=44%  Similarity=0.817  Sum_probs=192.7

Q ss_pred             ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCEEEEEEccCCCChHhHHHHHHHHHhcCce
Q 021210           99 PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTK  178 (316)
Q Consensus        99 ~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~~  178 (316)
                      .++||||||.+..+++++.++++|+||+|+|+|.|.+.++..+.+++.++|+++|+||+||++....++|.+++.+.+..
T Consensus         3 ~~~wfpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~~   82 (287)
T PRK09563          3 KIQWFPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIGNKPRLLILNKSDLADPEVTKKWIEYFEEQGIK   82 (287)
T ss_pred             cCcCcHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhCCCCEEEEEEchhcCCHHHHHHHHHHHHHcCCe
Confidence            38999999999999999999999999999999999999999898888899999999999998776677888888766777


Q ss_pred             EEEeccccccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEE
Q 021210          179 VIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV  258 (316)
Q Consensus       179 vi~iSa~~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~  258 (316)
                      ++++|++++.|+++|.+.+..+.+....+...++.....++++++|+||||||||||+|.+++.+.+++.||+|++.+++
T Consensus        83 vi~vSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~  162 (287)
T PRK09563         83 ALAINAKKGQGVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWI  162 (287)
T ss_pred             EEEEECCCcccHHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEE
Confidence            89999999999999998888776544333333444456789999999999999999999999989999999999999999


Q ss_pred             EeCCcEEEEeCCCcccCCCCCHHHHHHHHhcccccccCcchHHHHHHHHHHHHcC
Q 021210          259 RFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARI  313 (316)
Q Consensus       259 ~~~~~~~liDTPGi~~~~~~~~~~~~~La~~~~i~~~~~~~~~v~~~ll~~L~~~  313 (316)
                      .++.+++|+||||+..+...+.+.+.+|+++++|.+..++..+++.++++.|+++
T Consensus       163 ~~~~~~~l~DtPGi~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~ll~~l~~~  217 (287)
T PRK09563        163 KLGKGLELLDTPGILWPKLEDQEVGLKLALTGAIKDEALDLEEVAIFALEYLSKH  217 (287)
T ss_pred             EeCCcEEEEECCCcCCCCCCcHHHHHHHHHhCCcchhhcChHHHHHHHHHHHHhh
Confidence            9988999999999999888888999999999999999999999999999999764

>COG1161 Predicted GTPases [General function prediction only]

Probab=100.00  E-value=5.9e-38  Score=297.60  Aligned_cols=213  Identities=38%  Similarity=0.714  Sum_probs=192.7

Q ss_pred             cccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCEEEEEEccCCCChHhHHHHHHHHHhc-C
Q 021210           98 RPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQ-G  176 (316)
Q Consensus        98 ~~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~-g  176 (316)
                      ..++|+||||.++.+++.+.++.+|+|++|+|||+|.+++++.+.+++.+++.++|+||+||++....++|.+++.+. +
T Consensus        12 ~~i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~   91 (322)
T COG1161          12 NKIQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVKEKPKLLVLNKADLAPKEVTKKWKKYFKKEEG   91 (322)
T ss_pred             ccccCCCCchHHHHHHHHHhcccCCEEEEEEeccccccccCccHHHHHccCCcEEEEehhhcCCHHHHHHHHHHHHhcCC
Confidence            369999999999999999999999999999999999999999999999999999999999999999999999999887 5


Q ss_pred             ceEEEeccccccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE
Q 021210          177 TKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK  256 (316)
Q Consensus       177 ~~vi~iSa~~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~  256 (316)
                      ...++++++.+.+...+...+..+......+...++......++++||+||||||||||+|.+++.+.+|+.||+|++.+
T Consensus        92 ~~~~~v~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q  171 (322)
T COG1161          92 IKPIFVSAKSRQGGKKIRKALEKLSEEKIKRLKKKGLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQ  171 (322)
T ss_pred             CccEEEEeecccCccchHHHHHHHHHHHHHHHhhcCCCccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceE
Confidence            77899999999998888866555543322333445555667899999999999999999999999999999999999999


Q ss_pred             EEEeCCcEEEEeCCCcccCCCCC-HHHHHHHHhcccccccCcchHHHHHHHHHHH
Q 021210          257 WVRFGKDLEFLDSPGIIPMRISD-QAAAIKLAICDDIGERSYDVADVAAILVQML  310 (316)
Q Consensus       257 ~~~~~~~~~liDTPGi~~~~~~~-~~~~~~La~~~~i~~~~~~~~~v~~~ll~~L  310 (316)
                      ++.+...++|+||||++++...+ ...+.+++.+++|++.+++...++..++.++
T Consensus       172 ~i~~~~~i~LlDtPGii~~~~~~~~~v~~~l~~~~~Ik~~~~~~~~v~~~~~~~~  226 (322)
T COG1161         172 WIKLDDGIYLLDTPGIIPPKFDDDELVLLKLAPKGEIKDPVLPADEVAERLLGGL  226 (322)
T ss_pred             EEEcCCCeEEecCCCcCCCCccchHHHhhccccccccCccccChHHHHHHHHhhh
Confidence            99999999999999999998888 8889999999999999999999999999888

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=100.00  E-value=4e-36  Score=276.18  Aligned_cols=221  Identities=31%  Similarity=0.509  Sum_probs=181.4

Q ss_pred             EEEeccccccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCEEEEEEccCCCChHhHHHHHH
Q 021210           91 YYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWAT  170 (316)
Q Consensus        91 ~~~~~~~~~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~IlVlNK~DLv~~~~~~~~~~  170 (316)
                      +.|..--.+..||||||.++.|.+++.+...|+||+|.|||.|++++++.+.+.+..++.|+|+||+||.+..+.....+
T Consensus        17 ~~~~~~~~~~~wfpgHmakalr~i~~~l~~~D~iiEvrDaRiPLssrn~~~~~~~~~k~riiVlNK~DLad~~~~k~~iq   96 (335)
T KOG2485|consen   17 VIFAKYNMPRRWFPGHMAKALRAIQNRLPLVDCIIEVRDARIPLSSRNELFQDFLPPKPRIIVLNKMDLADPKEQKKIIQ   96 (335)
T ss_pred             ccccccCCccccCchHHHHHHHHHHhhcccccEEEEeeccccCCccccHHHHHhcCCCceEEEEecccccCchhhhHHHH
Confidence            34455556799999999999999999999999999999999999999999999999999999999999999777777777


Q ss_pred             HHHhcCc-eEEEeccccccc--hhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhc-----Ccc
Q 021210          171 YFAKQGT-KVIFSNGQLGMG--TMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLK-----RRM  242 (316)
Q Consensus       171 ~~~~~g~-~vi~iSa~~g~g--i~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~-----~~~  242 (316)
                      +++..+. .++..++....+  +..+...+..+..+....-+   -.+...+++|+|.||||||||||++..     ++.
T Consensus        97 ~~~~~~~~~~~~~~c~~~~~~~v~~l~~il~~~~~~l~r~ir---t~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~  173 (335)
T KOG2485|consen   97 YLEWQNLESYIKLDCNKDCNKQVSPLLKILTILSEELVRFIR---TLNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKA  173 (335)
T ss_pred             HHHhhcccchhhhhhhhhhhhccccHHHHHHHHHHHHHHhhc---ccCCceeEEEEcCCCCChHHHHHHHHHHHhhhccc
Confidence            7775543 345555554433  56666655555443322111   123457899999999999999999863     467


Q ss_pred             cccCCCCCceeeEEE-EEe--CCcEEEEeCCCcccCCCCCHHHHHHHHhcccccccCcchHHHHHHHHHHHHcCC
Q 021210          243 CPAAPRPGVTRVLKW-VRF--GKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIP  314 (316)
Q Consensus       243 ~~vs~~pgtT~~~~~-~~~--~~~~~liDTPGi~~~~~~~~~~~~~La~~~~i~~~~~~~~~v~~~ll~~L~~~~  314 (316)
                      +.|++.||+|+.++. +++  ...++++||||+..+++.+.+.+++||+||+.+++.++.+.+++|+++.|++|-
T Consensus       174 a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I~~~e~~lKLAL~g~Vkd~~V~~~~~adylL~~lN~~~  248 (335)
T KOG2485|consen  174 ARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPSIVDVEDGLKLALCGLVKDHLVGEETIADYLLYLLNSHS  248 (335)
T ss_pred             eeccCCCCceeeehhheEeccCCceEEecCCCcCCCCCCCHHHhhhhhhcccccccccCHHHHHHHHHHHHhccC
Confidence            789999999999864 555  446899999999999999999999999999999999999999999999999874

>cd01856 YlqF YlqF

Probab=100.00  E-value=1.5e-32  Score=237.99  Aligned_cols=171  Identities=47%  Similarity=0.907  Sum_probs=144.6

Q ss_pred             cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCEEEEEEccCCCChHhHHHHHHHHHhcCceEEE
Q 021210          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIF  181 (316)
Q Consensus       102 ~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~~vi~  181 (316)
                      ||||||+++.+++++.+++||+|++|+|++.+....+..+...+.+++.++|+||+|+.+..+...|.+++...+..+++
T Consensus         1 ~~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~   80 (171)
T cd01856           1 WFPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKILGNKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLF   80 (171)
T ss_pred             CCchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHhcCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEE
Confidence            99999999999999999999999999999998877777777777788999999999998766556677777666677899


Q ss_pred             eccccccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEeC
Q 021210          182 SNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFG  261 (316)
Q Consensus       182 iSa~~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~~  261 (316)
                      +|++++.|+++|.+.+.......... +..+..+...+++++|.+|||||||+|+|.+...+.+++.||||++.+.+.++
T Consensus        81 iSa~~~~gi~~L~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~  159 (171)
T cd01856          81 VNAKSGKGVKKLLKAAKKLLKDIEKL-KAKGLLPRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS  159 (171)
T ss_pred             EECCCcccHHHHHHHHHHHHHHHhhh-hhcccCCCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec
Confidence            99999999999998877754322211 12233445678999999999999999999998888999999999999988887


Q ss_pred             CcEEEEeCCCcc
Q 021210          262 KDLEFLDSPGII  273 (316)
Q Consensus       262 ~~~~liDTPGi~  273 (316)
                      .++.++||||+.
T Consensus       160 ~~~~~iDtpG~~  171 (171)
T cd01856         160 PGIYLLDTPGIL  171 (171)
T ss_pred             CCEEEEECCCCC
Confidence            789999999984

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG2484 consensus GTPase [General function prediction only]

Probab=100.00  E-value=6.3e-33  Score=261.62  Aligned_cols=287  Identities=29%  Similarity=0.393  Sum_probs=205.4

Q ss_pred             cccccccCCCCC-ccccc--ccccccccCCCCCeeEE---ecC-CCCCcCCC------------CCCCCCCCcchhhhhh
Q 021210           21 FVHCKSKTKPST-TSLAS--SASLSSSLSSSAPIIQT---VGG-KQSSWHGG------------NSNNSNGSIEAYEEEC   81 (316)
Q Consensus        21 ~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~------------~~~~~~~~~g~~~e~e   81 (316)
                      +.||+.+.+... ++...  ....|...++.|+..+|   +|. +.......            ..+...+  +...++.
T Consensus        26 ~~h~~k~~k~akk~~~~~s~~~kdp~ipns~p~k~~il~eve~~k~~~~e~re~rk~ark~e~~~~k~~~l--e~~~~~~  103 (435)
T KOG2484|consen   26 REHHRKVRKYAKKNGAKKSRPRKDPGIPNSVPFKEQILPEVESKKMRIEEEREARKAARKEEAIERKKNGL--EANVDDK  103 (435)
T ss_pred             HHhhhHhhhHhhhCcccccccccCCCCCCCCCChHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHhhhhhh--hhhhhHH
Confidence            456666666554 33333  36677888888888887   344 33322221            1110000  0011111


Q ss_pred             cccc---CCcceEEEe-ccccccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh----CCCCEEEE
Q 021210           82 DWAD---LDADLYYWT-KSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL----GNRKRILV  153 (316)
Q Consensus        82 ~~~~---~d~~~~~~~-~~~~~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l----~~k~~IlV  153 (316)
                      ++..   .|.+...+. .......|++++...|.++++++++.+|+||+|+|||+|++++++++++++    ++|++|+|
T Consensus       104 ~~~~~~~~e~e~~~~~e~~~~~~~~~~~s~kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILV  183 (435)
T KOG2484|consen  104 DERIEPSPEEEEMLYAEEEYENALDNEESKKAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILV  183 (435)
T ss_pred             HHhcCCCcchHHHHHHHHHhhhhccchhhHHHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEE
Confidence            1111   244444443 456678899999999999999999999999999999999999999999987    46999999


Q ss_pred             EEccCCCChHhHHHHHHHHHhcCceEEEeccccccch--hhhH--H-HHHHhhhhhhhhhcccCCCccceEEeEeccCCC
Q 021210          154 LNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGT--MKLS--R-LAKALASDVNVKRRSKGLLPRAVRAGIVGYPNV  228 (316)
Q Consensus       154 lNK~DLv~~~~~~~~~~~~~~~g~~vi~iSa~~g~gi--~~L~--~-~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNv  228 (316)
                      +||+||++.+.+++|+.|+++.+..++|.++....+.  ..+.  . +-.+..-+........+..+..++++|||+|||
T Consensus       184 LNK~DLVPrEv~e~Wl~YLr~~~ptv~fkast~~~~~~~~~~~~s~c~gae~l~~~lgny~~~~~lk~sIrvGViG~PNV  263 (435)
T KOG2484|consen  184 LNKIDLVPREVVEKWLVYLRREGPTVAFKASTQMQNSNSKNLQSSVCFGAETLMKVLGNYCRKGELKTSIRVGIIGYPNV  263 (435)
T ss_pred             eehhccCCHHHHHHHHHHHHhhCCcceeecccccccccccccccchhhhHHHHHHHhcCcccccccCcceEeeeecCCCC
Confidence            9999999999999999999999988888766544332  1111  0 000011111112233445667899999999999


Q ss_pred             CcchhHHhhhcCcccccCCCCCceeeEEEEEeCCcEEEEeCCCcccCCCCCHHHHHHHHhcccccccCcchHHHHHHHHH
Q 021210          229 GKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQ  308 (316)
Q Consensus       229 GKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~~~~~~liDTPGi~~~~~~~~~~~~~La~~~~i~~~~~~~~~v~~~ll~  308 (316)
                      ||||+||+|..++.|.+++.||.|+.+++++++.++.|+|+||++.++..+.+ ++.|.-|..+....+++..+..+|-+
T Consensus       264 GKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ldk~i~llDsPgiv~~~~~~~~-~~~Lrn~~~i~~~~dp~~~v~~iL~~  342 (435)
T KOG2484|consen  264 GKSSVINSLKRRKACNVGNVPGVTRSMQEVKLDKKIRLLDSPGIVPPSIDEKD-ALALRNCIPIGKVADPVTPVSCILKR  342 (435)
T ss_pred             ChhHHHHHHHHhccccCCCCccchhhhhheeccCCceeccCCceeecCCCccc-hhhhhcccccccccCccchHHHHHHH
Confidence            99999999999999999999999999999999999999999999988887665 66677777777677777777776655


Q ss_pred             HH
Q 021210          309 ML  310 (316)
Q Consensus       309 ~L  310 (316)
                      +.
T Consensus       343 ~~  344 (435)
T KOG2484|consen  343 CS  344 (435)
T ss_pred             hh
Confidence            44

>cd01858 NGP_1 NGP-1

Probab=99.97  E-value=3.5e-30  Score=219.88  Aligned_cols=151  Identities=31%  Similarity=0.542  Sum_probs=128.0

Q ss_pred             HHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC----CCCEEEEEEccCCCChHhHHHHHHHHHhcC-ceEEEecccccc
Q 021210          114 LKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG----NRKRILVLNREDMISMADRNAWATYFAKQG-TKVIFSNGQLGM  188 (316)
Q Consensus       114 l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~----~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g-~~vi~iSa~~g~  188 (316)
                      +++.++++|+|++|+|+++|....+..+.+++.    ++|+++|+||+|++++++...|.+++.+.. ..++++|++++.
T Consensus         2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~   81 (157)
T cd01858           2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPF   81 (157)
T ss_pred             hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeeccccc
Confidence            577899999999999999998888888887775    389999999999998877777888876543 235789999999


Q ss_pred             chhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEeCCcEEEEe
Q 021210          189 GTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLD  268 (316)
Q Consensus       189 gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~~~~~~liD  268 (316)
                      |+++|.+.+.++....   +     .....+|+++|.||||||||||+|.+.+.+.+++.||+|++.+++.++.+++|+|
T Consensus        82 ~~~~L~~~l~~~~~~~---~-----~~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~liD  153 (157)
T cd01858          82 GKGSLIQLLRQFSKLH---S-----DKKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMKRIYLID  153 (157)
T ss_pred             cHHHHHHHHHHHHhhh---c-----cccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCCCEEEEE
Confidence            9999988887764321   1     0124679999999999999999999999999999999999999999888899999


Q ss_pred             CCCc
Q 021210          269 SPGI  272 (316)
Q Consensus       269 TPGi  272 (316)
                      |||+
T Consensus       154 tPGi  157 (157)
T cd01858         154 CPGV  157 (157)
T ss_pred             CcCC
Confidence            9997

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=99.96  E-value=1e-29  Score=246.15  Aligned_cols=214  Identities=23%  Similarity=0.357  Sum_probs=164.4

Q ss_pred             CCCCCCCCcchhhhhhccccCCcceEEEeccccccc------ccc-chHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc
Q 021210           66 NSNNSNGSIEAYEEECDWADLDADLYYWTKSLRPVQ------WYP-GHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH  138 (316)
Q Consensus        66 ~~~~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~i~------~~P-gh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~  138 (316)
                      .+..++.|+-....+++...-..++.-|.+.+...+      .+| .+..+++|+++.+++++|+|+.|||||+|+..+.
T Consensus       113 ~iPRRP~W~~~~s~eeLd~~EkeaFlewrr~L~~Lqe~e~l~lTpFErNLE~WRQLWRVlErSDivvqIVDARnPllfr~  192 (562)
T KOG1424|consen  113 DIPRRPPWTLEMSKEELDRQEKEAFLEWRRKLASLQENEKLVLTPFERNLEIWRQLWRVLERSDIVVQIVDARNPLLFRS  192 (562)
T ss_pred             cccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCeeechhhhCHHHHHHHHHHHhhcceEEEEeecCCccccCC
Confidence            466777787777777777766777777777766544      233 4567899999999999999999999999999999


Q ss_pred             HHHHHHhC----CCCEEEEEEccCCCChHhHHHHHHHHHhcCceEEEecccc----ccc--hhhh----------HH---
Q 021210          139 PLMDQWLG----NRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQL----GMG--TMKL----------SR---  195 (316)
Q Consensus       139 ~~i~~~l~----~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~~vi~iSa~~----g~g--i~~L----------~~---  195 (316)
                      +.++.++.    .|..++++||+||++..++.+|.+||.+.++.++|.||..    +++  +.+-          ..   
T Consensus       193 ~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~ni~~vf~SA~~at~~~~~~~~~e~~r~~d~~~~~~~~~~  272 (562)
T KOG1424|consen  193 PDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQNNIPVVFFSALAATEQLESKVLKEDRRSLDGVSRALGAIF  272 (562)
T ss_pred             hhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhcCceEEEEecccccccccccchhhhhhcccchhhhccccc
Confidence            99999976    4788999999999999999999999999999999999875    111  1110          00   


Q ss_pred             ------HHHHhhh---hhhhhhcc----------cC-CCccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE
Q 021210          196 ------LAKALAS---DVNVKRRS----------KG-LLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL  255 (316)
Q Consensus       196 ------~L~~l~~---~~~~~r~~----------~~-~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~  255 (316)
                            .+.+...   ++..-...          .+ ....-+.|++||||||||||+||+|.|.+...||..||-|+.+
T Consensus       273 ~~~~d~~i~r~~~d~~e~~~v~~~~~~s~~~~~~t~~~~~~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHF  352 (562)
T KOG1424|consen  273 VGEVDLKIARDKGDGEEIEDVEQLRLISAMEPTPTGERYKDVVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHF  352 (562)
T ss_pred             cccchhhhhhhcccccchhhHHhhhhhhccccCCCCcCCCceeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCccee
Confidence                  0000000   00000000          00 0112488999999999999999999999999999999999999


Q ss_pred             EEEEeCCcEEEEeCCCcccCCCCC
Q 021210          256 KWVRFGKDLEFLDSPGIIPMRISD  279 (316)
Q Consensus       256 ~~~~~~~~~~liDTPGi~~~~~~~  279 (316)
                      |.+.+...+.|+||||+..+.+..
T Consensus       353 QTi~ls~~v~LCDCPGLVfPSf~~  376 (562)
T KOG1424|consen  353 QTIFLSPSVCLCDCPGLVFPSFSP  376 (562)
T ss_pred             EEEEcCCCceecCCCCccccCCCc
Confidence            999999999999999999777654

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.96  E-value=1.9e-29  Score=243.11  Aligned_cols=221  Identities=21%  Similarity=0.257  Sum_probs=155.5

Q ss_pred             hhhccccCCcceE--EEeccccccccccch--------HHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--
Q 021210           79 EECDWADLDADLY--YWTKSLRPVQWYPGH--------IAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--  146 (316)
Q Consensus        79 e~e~~~~~d~~~~--~~~~~~~~i~~~Pgh--------~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--  146 (316)
                      ++..+.|.|.-|.  .|....-.+.++.|-        ..+..++....+++||+||+|+|++.+++..+..++++|.  
T Consensus        32 ~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~  111 (444)
T COG1160          32 SDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRS  111 (444)
T ss_pred             ecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc
Confidence            4445556665554  344332224555443        2345555666789999999999999999999999999986  


Q ss_pred             CCCEEEEEEccCCCChHhHHHHHHHHHhcC-ceEEEeccccccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEecc
Q 021210          147 NRKRILVLNREDMISMADRNAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGY  225 (316)
Q Consensus       147 ~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g-~~vi~iSa~~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~  225 (316)
                      ++|+++|+||+|-...+   +....|.++| .+++++||.+|.|+.+|.+.+....+ ........+ ...+++|++||+
T Consensus       112 ~kpviLvvNK~D~~~~e---~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~-~~e~~~~~~-~~~~ikiaiiGr  186 (444)
T COG1160         112 KKPVILVVNKIDNLKAE---ELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLELLP-PDEEEEEEE-ETDPIKIAIIGR  186 (444)
T ss_pred             CCCEEEEEEcccCchhh---hhHHHHHhcCCCCceEeehhhccCHHHHHHHHHhhcC-Ccccccccc-cCCceEEEEEeC
Confidence            58999999999976332   2333466677 57899999999999999988777653 211111111 135799999999


Q ss_pred             CCCCcchhHHhhhcCcccccCCCCCceeeEE---EEEeCCcEEEEeCCCcccC-CCCCHHHHHHHHhcccccccCcchHH
Q 021210          226 PNVGKSSLINRLLKRRMCPAAPRPGVTRVLK---WVRFGKDLEFLDSPGIIPM-RISDQAAAIKLAICDDIGERSYDVAD  301 (316)
Q Consensus       226 pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~---~~~~~~~~~liDTPGi~~~-~~~~~~~~~~La~~~~i~~~~~~~~~  301 (316)
                      ||||||||+|+|+++.++.+++.||||||..   +.+.++.+.++||+|++.. +..  +..++++...++  ++++.++
T Consensus       187 PNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~--e~~E~~Sv~rt~--~aI~~a~  262 (444)
T COG1160         187 PNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKIT--ESVEKYSVARTL--KAIERAD  262 (444)
T ss_pred             CCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccc--cceEEEeehhhH--hHHhhcC
Confidence            9999999999999999999999999999964   3334778999999999853 332  223344444444  3445555


Q ss_pred             HHHHHHH
Q 021210          302 VAAILVQ  308 (316)
Q Consensus       302 v~~~ll~  308 (316)
                      ++.+++|
T Consensus       263 vvllviD  269 (444)
T COG1160         263 VVLLVID  269 (444)
T ss_pred             EEEEEEE
Confidence            5544443

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=99.95  E-value=1.4e-27  Score=203.51  Aligned_cols=151  Identities=32%  Similarity=0.512  Sum_probs=121.3

Q ss_pred             CeEEEEEeCCCCCCCCcHHHH-HHh--CCCCEEEEEEccCCCChHhHHHHHHHHHhc-CceEEEeccccccchhhhHHHH
Q 021210          122 DVVIEVRDARIPLSTTHPLMD-QWL--GNRKRILVLNREDMISMADRNAWATYFAKQ-GTKVIFSNGQLGMGTMKLSRLA  197 (316)
Q Consensus       122 DlIl~VvDar~~~~~~~~~i~-~~l--~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~-g~~vi~iSa~~g~gi~~L~~~L  197 (316)
                      |++|+|+|+++|.+..+..+. ..+  .++|+++|+||+|+++.++..+|..++.+. +..++++|+++|.|+++|.+.+
T Consensus         1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~~i   80 (155)
T cd01849           1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKESAF   80 (155)
T ss_pred             CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHHHHH
Confidence            899999999999888877776 343  378999999999999887777787666543 4668999999999999998876


Q ss_pred             HHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEeCCcEEEEeCCCc
Q 021210          198 KALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGI  272 (316)
Q Consensus       198 ~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~~~~~~liDTPGi  272 (316)
                      .+..........+++......+++++|.||||||||+|+|++...+.++..||||++.+++.++..+.|+|||||
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtPG~  155 (155)
T cd01849          81 TKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLDNKIKLLDTPGI  155 (155)
T ss_pred             HHHhHHHHHHHHhccccccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEecCCEEEEECCCC
Confidence            543211111112222234567899999999999999999999988899999999999999988888999999997

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=99.95  E-value=1.4e-27  Score=200.43  Aligned_cols=136  Identities=34%  Similarity=0.617  Sum_probs=121.5

Q ss_pred             HHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC----CCCEEEEEEccCCCChHhHHHHHHHHHhcCceEEEecccc
Q 021210          111 EKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG----NRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQL  186 (316)
Q Consensus       111 ~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~----~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~~vi~iSa~~  186 (316)
                      ++++.+.++++|++++|+|++.|.+..+..+.+++.    ++|+++|+||+||+++.+..+|.+++.+.+.+++++|+++
T Consensus         2 ~~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~   81 (141)
T cd01857           2 WRQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALK   81 (141)
T ss_pred             HHHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecC
Confidence            467888999999999999999999888888888763    7899999999999987777788888888888899999987


Q ss_pred             ccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEeCCcEEE
Q 021210          187 GMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEF  266 (316)
Q Consensus       187 g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~~~~~~l  266 (316)
                      +.+                             +++++|.||||||||+|+|++.....++..+|+|++.+.+.++.++.|
T Consensus        82 ~~~-----------------------------~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  132 (141)
T cd01857          82 ENA-----------------------------TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTPTITL  132 (141)
T ss_pred             CCc-----------------------------EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCCCEEE
Confidence            754                             389999999999999999999988889999999999999999888999


Q ss_pred             EeCCCcccC
Q 021210          267 LDSPGIIPM  275 (316)
Q Consensus       267 iDTPGi~~~  275 (316)
                      +|||||..+
T Consensus       133 ~DtpG~~~p  141 (141)
T cd01857         133 CDCPGLVFP  141 (141)
T ss_pred             EECCCcCCC
Confidence            999999753

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=99.95  E-value=2.9e-27  Score=205.57  Aligned_cols=143  Identities=38%  Similarity=0.661  Sum_probs=112.5

Q ss_pred             CeEEEEEeCCCCCCCCcHHHHHH--h--CCCCEEEEEEccCCCChHhHHHHHHHHHhcCceEEEeccccc----------
Q 021210          122 DVVIEVRDARIPLSTTHPLMDQW--L--GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLG----------  187 (316)
Q Consensus       122 DlIl~VvDar~~~~~~~~~i~~~--l--~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~~vi~iSa~~g----------  187 (316)
                      |+|++|+|+|.|.+..++.+.+.  +  .++|+|+|+||+||++++...+|.+++.+....+.+.|+...          
T Consensus         1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (172)
T cd04178           1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLRREFPTVAFKASTQSQKKNLGQKSV   80 (172)
T ss_pred             CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHHHHHHHHHHHhhCCEEEEEecccccccchhhccc
Confidence            89999999999999999999888  3  368999999999999998889999999876544444443321          


Q ss_pred             ---------------cchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCce
Q 021210          188 ---------------MGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT  252 (316)
Q Consensus       188 ---------------~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT  252 (316)
                                     .|.++|.+.++.+.        .++....+++++++|+||||||||||+|++.+.+.+++.||+|
T Consensus        81 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~--------~~~~~~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T  152 (172)
T cd04178          81 KVEAASADLLRSSVCFGADCLLKLLKNYS--------RNKDIKTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVT  152 (172)
T ss_pred             ccchhhhhhhhhccccCHHHHHHHHHHHh--------hccccccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeE
Confidence                           11222222222211        1122344688999999999999999999999999999999999


Q ss_pred             eeEEEEEeCCcEEEEeCCCc
Q 021210          253 RVLKWVRFGKDLEFLDSPGI  272 (316)
Q Consensus       253 ~~~~~~~~~~~~~liDTPGi  272 (316)
                      ++.+++..+.++.|+||||+
T Consensus       153 ~~~~~~~~~~~~~l~DtPGi  172 (172)
T cd04178         153 KSMQEVHLDKKVKLLDSPGI  172 (172)
T ss_pred             cceEEEEeCCCEEEEECcCC
Confidence            99999999888999999997

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=99.94  E-value=9.3e-27  Score=219.29  Aligned_cols=167  Identities=30%  Similarity=0.517  Sum_probs=140.1

Q ss_pred             cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC----CCCEEEEEEccCCCChHhHHHHHHHHHhcCc
Q 021210          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG----NRKRILVLNREDMISMADRNAWATYFAKQGT  177 (316)
Q Consensus       102 ~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~----~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~  177 (316)
                      .--|...+.+.++.++++.+|+||.|+|||+|..+++..++++++    .|++|+|+|||||++......|...+.+...
T Consensus       195 f~kGQSkRIW~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lSkeyP  274 (572)
T KOG2423|consen  195 FSKGQSKRIWGELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEYP  274 (572)
T ss_pred             HhccchhHHHHHHHHhhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccHHHHHHHHHHHhhhCc
Confidence            345888899999999999999999999999999999999999987    5789999999999999999999998877654


Q ss_pred             eEEEe-ccccccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE
Q 021210          178 KVIFS-NGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK  256 (316)
Q Consensus       178 ~vi~i-Sa~~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~  256 (316)
                      .+.|- |-.+..|-..|.++|.++..-..        ....+.|+|||||||||||+||+|..++.|.|+++||-|+-.|
T Consensus       275 TiAfHAsi~nsfGKgalI~llRQf~kLh~--------dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQ  346 (572)
T KOG2423|consen  275 TIAFHASINNSFGKGALIQLLRQFAKLHS--------DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQ  346 (572)
T ss_pred             ceeeehhhcCccchhHHHHHHHHHHhhcc--------CccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHH
Confidence            33332 33444566677777777654221        1235679999999999999999999999999999999999988


Q ss_pred             EEEeCCcEEEEeCCCcccCC
Q 021210          257 WVRFGKDLEFLDSPGIIPMR  276 (316)
Q Consensus       257 ~~~~~~~~~liDTPGi~~~~  276 (316)
                      .+.+-+.++||||||+..+.
T Consensus       347 YItLmkrIfLIDcPGvVyps  366 (572)
T KOG2423|consen  347 YITLMKRIFLIDCPGVVYPS  366 (572)
T ss_pred             HHHHHhceeEecCCCccCCC
Confidence            88888899999999998664

>cd01859 MJ1464 MJ1464

Probab=99.94  E-value=2e-25  Score=189.82  Aligned_cols=151  Identities=34%  Similarity=0.549  Sum_probs=122.0

Q ss_pred             HHHH-HHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCEEEEEEccCCCChHhHHHHHHHHHhcCceEEEecccccc
Q 021210          112 KELK-DQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGM  188 (316)
Q Consensus       112 r~l~-~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~~vi~iSa~~g~  188 (316)
                      +++. ..++++|++|+|+|++++....+..+..++  .++|+++|+||+|+.+..+...|..+....+.+++++||+++.
T Consensus         3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~~~   82 (156)
T cd01859           3 KRLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKERL   82 (156)
T ss_pred             HHHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEccccc
Confidence            3444 445669999999999998877777776654  3789999999999987655555554444455678999999999


Q ss_pred             chhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEeCCcEEEEe
Q 021210          189 GTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLD  268 (316)
Q Consensus       189 gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~~~~~~liD  268 (316)
                      |+++|.+.+.++.+..          ....+++++|.+|||||||+|+|.+.....+++.+|+|+..+.+..+.++.++|
T Consensus        83 gi~~L~~~l~~~~~~~----------~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~D  152 (156)
T cd01859          83 GTKILRRTIKELAKID----------GKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITSKIYLLD  152 (156)
T ss_pred             cHHHHHHHHHHHHhhc----------CCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCCCEEEEE
Confidence            9999998887765421          134578999999999999999999888788999999999988888888899999


Q ss_pred             CCCc
Q 021210          269 SPGI  272 (316)
Q Consensus       269 TPGi  272 (316)
                      |||+
T Consensus       153 tpGi  156 (156)
T cd01859         153 TPGV  156 (156)
T ss_pred             CcCC
Confidence            9997

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd01855 YqeH YqeH

Probab=99.93  E-value=1e-25  Score=197.99  Aligned_cols=150  Identities=31%  Similarity=0.384  Sum_probs=116.8

Q ss_pred             HHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCEEEEEEccCCCChHh----HHHHHH--HHHhcC---ceEE
Q 021210          110 TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMAD----RNAWAT--YFAKQG---TKVI  180 (316)
Q Consensus       110 ~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~IlVlNK~DLv~~~~----~~~~~~--~~~~~g---~~vi  180 (316)
                      +...+...++++|+|++|+|++++....+..+.....++|+++|+||+|+.+...    ...|.+  .+...+   ..++
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  103 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPGSLIPRLRLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVI  103 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCCccchhHHHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcccEE
Confidence            3556667789999999999999887666666644445789999999999985432    223331  112223   2588


Q ss_pred             EeccccccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCc--------ccccCCCCCce
Q 021210          181 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRR--------MCPAAPRPGVT  252 (316)
Q Consensus       181 ~iSa~~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~--------~~~vs~~pgtT  252 (316)
                      ++||++|.|+++|.+.+....+.             ..+++++|.||||||||||+|++..        ...++..||||
T Consensus       104 ~vSA~~~~gi~eL~~~l~~~l~~-------------~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT  170 (190)
T cd01855         104 LISAKKGWGVEELINAIKKLAKK-------------GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTT  170 (190)
T ss_pred             EEECCCCCCHHHHHHHHHHHhhc-------------CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCee
Confidence            99999999999998887765431             2368999999999999999999753        34678999999


Q ss_pred             eeEEEEEeCCcEEEEeCCCc
Q 021210          253 RVLKWVRFGKDLEFLDSPGI  272 (316)
Q Consensus       253 ~~~~~~~~~~~~~liDTPGi  272 (316)
                      ++.+.+.++.++.|+|||||
T Consensus       171 ~~~~~~~~~~~~~~~DtPG~  190 (190)
T cd01855         171 LDLIKIPLGNGKKLYDTPGI  190 (190)
T ss_pred             eeeEEEecCCCCEEEeCcCC
Confidence            99999998778999999997

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PRK13796 GTPase YqeH; Provisional

Probab=99.93  E-value=4.9e-26  Score=219.66  Aligned_cols=188  Identities=23%  Similarity=0.323  Sum_probs=141.3

Q ss_pred             HHHHHHHHhhcC-eEEEEEeCCCCCCCCcHHHHHHhCCCCEEEEEEccCCCCh----HhHHHHHHHH-HhcCc---eEEE
Q 021210          111 EKELKDQLKLMD-VVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISM----ADRNAWATYF-AKQGT---KVIF  181 (316)
Q Consensus       111 ~r~l~~~i~~aD-lIl~VvDar~~~~~~~~~i~~~l~~k~~IlVlNK~DLv~~----~~~~~~~~~~-~~~g~---~vi~  181 (316)
                      .+++.+.+..+| +|++|+|+.+...+..+.+.++..++++++|+||+||.+.    ++..+|.+.+ +..|+   ++++
T Consensus        59 ~~~~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~  138 (365)
T PRK13796         59 FLKLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFVGNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVL  138 (365)
T ss_pred             HHHHHHhhcccCcEEEEEEECccCCCchhHHHHHHhCCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEE
Confidence            344666666666 9999999999888888888888888999999999999864    2345565544 34454   5889


Q ss_pred             eccccccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcC-----cccccCCCCCceeeEE
Q 021210          182 SNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR-----RMCPAAPRPGVTRVLK  256 (316)
Q Consensus       182 iSa~~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~-----~~~~vs~~pgtT~~~~  256 (316)
                      +||+++.|+++|.+.+.++..              ..++++||.||||||||||+|++.     +...+|..||||++.+
T Consensus       139 vSAk~g~gI~eL~~~I~~~~~--------------~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~  204 (365)
T PRK13796        139 ISAQKGHGIDELLEAIEKYRE--------------GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKI  204 (365)
T ss_pred             EECCCCCCHHHHHHHHHHhcC--------------CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeE
Confidence            999999999999888766532              125899999999999999999854     3456899999999999


Q ss_pred             EEEeCCcEEEEeCCCcccC-CCC---CHHHHHHHHhcccccccCcchHHHHHHHHHHHHc
Q 021210          257 WVRFGKDLEFLDSPGIIPM-RIS---DQAAAIKLAICDDIGERSYDVADVAAILVQMLAR  312 (316)
Q Consensus       257 ~~~~~~~~~liDTPGi~~~-~~~---~~~~~~~La~~~~i~~~~~~~~~v~~~ll~~L~~  312 (316)
                      .+.++.+..|+|||||... .+.   +.++...+...+.+++++|....-..+++..|.|
T Consensus       205 ~~~l~~~~~l~DTPGi~~~~~~~~~l~~~~l~~~~p~k~i~p~~~~l~~gq~l~~ggl~r  264 (365)
T PRK13796        205 EIPLDDGSFLYDTPGIIHRHQMAHYLSAKDLKIISPKKEIKPKTYQLNEEQTLFLGGLAR  264 (365)
T ss_pred             EEEcCCCcEEEECCCccccchhhhcCCHHHHhhcCCCcccCceEEEECCCCEEEEeeEEE
Confidence            9999888899999999743 221   2344444555567777777665555555554443

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=99.92  E-value=4.1e-25  Score=212.92  Aligned_cols=154  Identities=26%  Similarity=0.341  Sum_probs=125.4

Q ss_pred             HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCEEEEEEccCCCChH----hHHHHHH-HHHhcCc---eE
Q 021210          108 AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMA----DRNAWAT-YFAKQGT---KV  179 (316)
Q Consensus       108 ~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~IlVlNK~DLv~~~----~~~~~~~-~~~~~g~---~v  179 (316)
                      .++.+.+......+|+|++|+|+.+...+..+++.+.+.++++++|+||+||+++.    +..+|.+ ++++.|.   ++
T Consensus        51 e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i  130 (360)
T TIGR03597        51 DDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFVGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDI  130 (360)
T ss_pred             HHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHhCCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcE
Confidence            34555555666889999999999998888888998888889999999999998643    3445543 3455564   48


Q ss_pred             EEeccccccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCc-----ccccCCCCCceee
Q 021210          180 IFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRR-----MCPAAPRPGVTRV  254 (316)
Q Consensus       180 i~iSa~~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~-----~~~vs~~pgtT~~  254 (316)
                      +++||++|.|+++|.+.+.++..              ..+++++|.||||||||||+|++..     .+.++..||||++
T Consensus       131 ~~vSAk~g~gv~eL~~~l~~~~~--------------~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~  196 (360)
T TIGR03597       131 ILVSAKKGNGIDELLDKIKKARN--------------KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLD  196 (360)
T ss_pred             EEecCCCCCCHHHHHHHHHHHhC--------------CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEee
Confidence            89999999999999888766532              1368999999999999999999753     4678999999999


Q ss_pred             EEEEEeCCcEEEEeCCCcccC
Q 021210          255 LKWVRFGKDLEFLDSPGIIPM  275 (316)
Q Consensus       255 ~~~~~~~~~~~liDTPGi~~~  275 (316)
                      .+.+.++.++.|+||||+...
T Consensus       197 ~~~~~~~~~~~l~DtPG~~~~  217 (360)
T TIGR03597       197 LIEIPLDDGHSLYDTPGIINS  217 (360)
T ss_pred             EEEEEeCCCCEEEECCCCCCh
Confidence            998888778899999999853

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK12289 GTPase RsgA; Reviewed

Probab=99.92  E-value=1.8e-24  Score=207.23  Aligned_cols=142  Identities=23%  Similarity=0.321  Sum_probs=118.5

Q ss_pred             HHhhcCeEEEEEeCCCCCCCCcHHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHHHhcCceEEEeccccccchh
Q 021210          117 QLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTM  191 (316)
Q Consensus       117 ~i~~aDlIl~VvDar~~~~~~~~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~~vi~iSa~~g~gi~  191 (316)
                      .++++|+|++|+|+.++... ...+.+++     .+.|+++|+||+||++..+...|.+.+...|+.++++||+++.|++
T Consensus        86 ~~aNvD~vLlV~d~~~p~~~-~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~tg~GI~  164 (352)
T PRK12289         86 PVANADQILLVFALAEPPLD-PWQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISVETGIGLE  164 (352)
T ss_pred             hhhcCCEEEEEEECCCCCCC-HHHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEcCCCCCHH
Confidence            48999999999999865422 22444444     3789999999999998777778888888889999999999999998


Q ss_pred             hhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCCC-------ceeeEEEEEeCCcE
Q 021210          192 KLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-------VTRVLKWVRFGKDL  264 (316)
Q Consensus       192 ~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pg-------tT~~~~~~~~~~~~  264 (316)
                      +|.+.+..   +               .++|+|.||||||||||+|++.....++.++|       ||++.+++.+..+.
T Consensus       165 eL~~~L~~---k---------------i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~  226 (352)
T PRK12289        165 ALLEQLRN---K---------------ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG  226 (352)
T ss_pred             HHhhhhcc---c---------------eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc
Confidence            88766532   1               26999999999999999999988888888887       99999999986667


Q ss_pred             EEEeCCCcccCCC
Q 021210          265 EFLDSPGIIPMRI  277 (316)
Q Consensus       265 ~liDTPGi~~~~~  277 (316)
                      +|+|||||..+.+
T Consensus       227 ~liDTPG~~~~~l  239 (352)
T PRK12289        227 LLADTPGFNQPDL  239 (352)
T ss_pred             EEEeCCCcccccc
Confidence            9999999997766

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.90  E-value=2.2e-24  Score=201.29  Aligned_cols=128  Identities=19%  Similarity=0.297  Sum_probs=114.4

Q ss_pred             CCCCCCCCCCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC---CCC
Q 021210           63 HGGNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL---STT  137 (316)
Q Consensus        63 ~~~~~~~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~---~~~  137 (316)
                      +.+.+|++++.||+++||||++|+|++||||++..|+  |+++||| ++|+|+|.+.++.||++|++||||.++   +.+
T Consensus        51 ~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~KRkFIiADTPGH-eQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrR  129 (431)
T COG2895          51 QGEKIDLALLVDGLEAEREQGITIDVAYRYFSTEKRKFIIADTPGH-EQYTRNMATGASTADLAILLVDARKGVLEQTRR  129 (431)
T ss_pred             CCCccchhhhhhhhHHHHhcCceEEEEeeecccccceEEEecCCcH-HHHhhhhhcccccccEEEEEEecchhhHHHhHH
Confidence            4478999999999999999999999999999999998  9999999 999999999999999999999999887   778


Q ss_pred             cHHHHHHhCCCCEEEEEEccCCCChHh------HHHHHHHHHhcC---ceEEEeccccccchh
Q 021210          138 HPLMDQWLGNRKRILVLNREDMISMAD------RNAWATYFAKQG---TKVIFSNGQLGMGTM  191 (316)
Q Consensus       138 ~~~i~~~l~~k~~IlVlNK~DLv~~~~------~~~~~~~~~~~g---~~vi~iSa~~g~gi~  191 (316)
                      |..|..+|+.+++++++|||||+++++      ..++..+..++|   ..++|+||..|+|+.
T Consensus       130 Hs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         130 HSFIASLLGIRHVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             HHHHHHHhCCcEEEEEEeeecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence            999999999999999999999998764      233444445566   468999999999875

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.90  E-value=2e-23  Score=191.21  Aligned_cols=143  Identities=22%  Similarity=0.285  Sum_probs=114.0

Q ss_pred             HHhhcCeEEEEEeCCCCCCCCcHHHHHHh-----CCCCEEEEEEccCCCChHhH-HHHHHHHHhcCceEEEeccccccch
Q 021210          117 QLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMADR-NAWATYFAKQGTKVIFSNGQLGMGT  190 (316)
Q Consensus       117 ~i~~aDlIl~VvDar~~~~~~~~~i~~~l-----~~k~~IlVlNK~DLv~~~~~-~~~~~~~~~~g~~vi~iSa~~g~gi  190 (316)
                      .++++|.+++|+|+++|..+.+. +.+++     .+.++++|+||+||.+..+. .+|.+.+.+.|+.++.+||++|.|+
T Consensus        33 ~~~n~D~viiV~d~~~p~~s~~~-l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~~~SAktg~gi  111 (245)
T TIGR00157        33 IVANIDQIVIVSSAVLPELSLNQ-LDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVLMTSSKNQDGL  111 (245)
T ss_pred             ccccCCEEEEEEECCCCCCCHHH-HHHHHHHHHHCCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEEEEecCCchhH
Confidence            58899999999999987755432 44443     36899999999999865443 3677778778889999999999999


Q ss_pred             hhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCC-------CceeeEEEEEeCCc
Q 021210          191 MKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-------GVTRVLKWVRFGKD  263 (316)
Q Consensus       191 ~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~p-------gtT~~~~~~~~~~~  263 (316)
                      ++|.+.+..   +               .++++|.||||||||||+|++.....++.++       |||++.+++.+ .+
T Consensus       112 ~eLf~~l~~---~---------------~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l-~~  172 (245)
T TIGR00157       112 KELIEALQN---R---------------ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF-HG  172 (245)
T ss_pred             HHHHhhhcC---C---------------EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc-CC
Confidence            888765432   1               3799999999999999999988766666543       59999999988 45


Q ss_pred             EEEEeCCCcccCCCCC
Q 021210          264 LEFLDSPGIIPMRISD  279 (316)
Q Consensus       264 ~~liDTPGi~~~~~~~  279 (316)
                      ..|+|||||+...+.+
T Consensus       173 ~~liDtPG~~~~~l~~  188 (245)
T TIGR00157       173 GLIADTPGFNEFGLWH  188 (245)
T ss_pred             cEEEeCCCccccCCCC
Confidence            6899999999876654

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK12288 GTPase RsgA; Reviewed

Probab=99.88  E-value=4.8e-22  Score=190.40  Aligned_cols=145  Identities=24%  Similarity=0.320  Sum_probs=113.9

Q ss_pred             HHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-----CCCCEEEEEEccCCCChHh---HHHHHHHHHhcCceEEEecccc
Q 021210          115 KDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMAD---RNAWATYFAKQGTKVIFSNGQL  186 (316)
Q Consensus       115 ~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l-----~~k~~IlVlNK~DLv~~~~---~~~~~~~~~~~g~~vi~iSa~~  186 (316)
                      +-.++++|.+++|.+....++.  ..+.+++     .+.+.++|+||+||++..+   ..+|.+.|.+.|++++++||++
T Consensus       115 q~iaANvD~vlIV~s~~p~~s~--~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~t  192 (347)
T PRK12288        115 KPIAANIDQIVIVSAVLPELSL--NIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHT  192 (347)
T ss_pred             ceEEEEccEEEEEEeCCCCCCH--HHHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            3357999999988886432222  2334443     2679999999999987542   4566777777889999999999


Q ss_pred             ccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCCC-------ceeeEEEEE
Q 021210          187 GMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-------VTRVLKWVR  259 (316)
Q Consensus       187 g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pg-------tT~~~~~~~  259 (316)
                      +.|+++|.+.+..   +               .++|+|.||||||||||+|++.....++.+++       ||+..+++.
T Consensus       193 g~GideL~~~L~~---k---------------i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~  254 (347)
T PRK12288        193 GEGLEELEAALTG---R---------------ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYH  254 (347)
T ss_pred             CcCHHHHHHHHhh---C---------------CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEE
Confidence            9999998877542   1               26899999999999999999988888887764       899999999


Q ss_pred             eCCcEEEEeCCCcccCCCCC
Q 021210          260 FGKDLEFLDSPGIIPMRISD  279 (316)
Q Consensus       260 ~~~~~~liDTPGi~~~~~~~  279 (316)
                      ++.+..|+|||||+...+.+
T Consensus       255 l~~~~~liDTPGir~~~l~~  274 (347)
T PRK12288        255 FPHGGDLIDSPGVREFGLWH  274 (347)
T ss_pred             ecCCCEEEECCCCCcccCCC
Confidence            97777899999999876643

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.87  E-value=2.4e-21  Score=190.25  Aligned_cols=170  Identities=25%  Similarity=0.264  Sum_probs=130.2

Q ss_pred             cccccch-------HHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChHhHHHHHH
Q 021210          100 VQWYPGH-------IAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWAT  170 (316)
Q Consensus       100 i~~~Pgh-------~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~~~~~~~  170 (316)
                      +-++||+       ...+.+++...++.+|++++|+|++.+.+..+..+.+++.  ++|+++|+||+|+.+....   ..
T Consensus        51 liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~---~~  127 (429)
T TIGR03594        51 LIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAV---AA  127 (429)
T ss_pred             EEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCccccc---HH
Confidence            5667875       3556677778899999999999999988887777877775  7899999999998764431   12


Q ss_pred             HHHhcCc-eEEEeccccccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCC
Q 021210          171 YFAKQGT-KVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP  249 (316)
Q Consensus       171 ~~~~~g~-~vi~iSa~~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~p  249 (316)
                      .+.++|. +++++||++|.|+.+|.+.+.........   ........++++++|.+|+|||||+|+|++.....+++.|
T Consensus       128 ~~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~~~~~---~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~  204 (429)
T TIGR03594       128 EFYSLGFGEPIPISAEHGRGIGDLLDAILELLPEEEE---EEEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIA  204 (429)
T ss_pred             HHHhcCCCCeEEEeCCcCCChHHHHHHHHHhcCcccc---cccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCC
Confidence            2445664 78999999999999988877655432111   1111224589999999999999999999998888899999


Q ss_pred             CceeeEEEEE---eCCcEEEEeCCCcccC
Q 021210          250 GVTRVLKWVR---FGKDLEFLDSPGIIPM  275 (316)
Q Consensus       250 gtT~~~~~~~---~~~~~~liDTPGi~~~  275 (316)
                      |||++.....   .+..+.++||||+...
T Consensus       205 gtt~~~~~~~~~~~~~~~~liDT~G~~~~  233 (429)
T TIGR03594       205 GTTRDSIDIPFERNGKKYLLIDTAGIRRK  233 (429)
T ss_pred             CceECcEeEEEEECCcEEEEEECCCcccc
Confidence            9999864332   2557899999999754

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK00098 GTPase RsgA; Reviewed

Probab=99.87  E-value=1e-21  Score=184.85  Aligned_cols=143  Identities=22%  Similarity=0.285  Sum_probs=112.5

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-----CCCCEEEEEEccCCC-ChHhHHHHHHHHHhcCceEEEeccccccc
Q 021210          116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMI-SMADRNAWATYFAKQGTKVIFSNGQLGMG  189 (316)
Q Consensus       116 ~~i~~aDlIl~VvDar~~~~~~~~~i~~~l-----~~k~~IlVlNK~DLv-~~~~~~~~~~~~~~~g~~vi~iSa~~g~g  189 (316)
                      ..++++|++++|+|+.++..... .+.+++     .+.|+++|+||+||. +.....+|.+.+.+.|++++++|++++.|
T Consensus        76 ~iaaniD~vllV~d~~~p~~~~~-~idr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~g  154 (298)
T PRK00098         76 LIAANVDQAVLVFAAKEPDFSTD-LLDRFLVLAEANGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEG  154 (298)
T ss_pred             ceeecCCEEEEEEECCCCCCCHH-HHHHHHHHHHHCCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCcc
Confidence            35899999999999987654322 233332     268999999999997 34445567777777788999999999999


Q ss_pred             hhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCC-------CceeeEEEEEeCC
Q 021210          190 TMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-------GVTRVLKWVRFGK  262 (316)
Q Consensus       190 i~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~p-------gtT~~~~~~~~~~  262 (316)
                      +++|.+.+.   .               -.++++|.+|||||||||+|++.....++.++       +||+..+++.++.
T Consensus       155 i~~L~~~l~---g---------------k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~  216 (298)
T PRK00098        155 LDELKPLLA---G---------------KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPG  216 (298)
T ss_pred             HHHHHhhcc---C---------------ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCC
Confidence            988876542   1               14799999999999999999988777776665       4999999988877


Q ss_pred             cEEEEeCCCcccCCC
Q 021210          263 DLEFLDSPGIIPMRI  277 (316)
Q Consensus       263 ~~~liDTPGi~~~~~  277 (316)
                      ..+|+||||++...+
T Consensus       217 ~~~~~DtpG~~~~~~  231 (298)
T PRK00098        217 GGLLIDTPGFSSFGL  231 (298)
T ss_pred             CcEEEECCCcCccCC
Confidence            789999999996544

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.86  E-value=6.8e-21  Score=187.54  Aligned_cols=169  Identities=24%  Similarity=0.223  Sum_probs=125.0

Q ss_pred             cccccchHH-------HHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChHhHHHHHH
Q 021210          100 VQWYPGHIA-------KTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWAT  170 (316)
Q Consensus       100 i~~~Pgh~~-------~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~~~~~~~  170 (316)
                      +.++||+..       ...++....+..+|++|+|+|++.+.+..+..+..++.  ++|+++|+||+|+.+..+  .. .
T Consensus        53 liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~~--~~-~  129 (435)
T PRK00093         53 LIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEEA--DA-Y  129 (435)
T ss_pred             EEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccchh--hH-H
Confidence            556777632       23344556789999999999999988777777777665  789999999999765321  12 2


Q ss_pred             HHHhcCc-eEEEeccccccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCC
Q 021210          171 YFAKQGT-KVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP  249 (316)
Q Consensus       171 ~~~~~g~-~vi~iSa~~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~p  249 (316)
                      .+.+.|. +++++||++|.|+++|.+.+.........    .......++|+++|.||+|||||+|+|++.....+++.|
T Consensus       130 ~~~~lg~~~~~~iSa~~g~gv~~l~~~I~~~~~~~~~----~~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~  205 (435)
T PRK00093        130 EFYSLGLGEPYPISAEHGRGIGDLLDAILEELPEEEE----EDEEDEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIA  205 (435)
T ss_pred             HHHhcCCCCCEEEEeeCCCCHHHHHHHHHhhCCcccc----ccccccceEEEEECCCCCCHHHHHHHHhCCCceeecCCC
Confidence            2345564 48999999999999988776653221110    001234689999999999999999999999888999999


Q ss_pred             CceeeEEEEE---eCCcEEEEeCCCcccC
Q 021210          250 GVTRVLKWVR---FGKDLEFLDSPGIIPM  275 (316)
Q Consensus       250 gtT~~~~~~~---~~~~~~liDTPGi~~~  275 (316)
                      |||++.....   .+..+.++||||+...
T Consensus       206 gtt~~~~~~~~~~~~~~~~lvDT~G~~~~  234 (435)
T PRK00093        206 GTTRDSIDTPFERDGQKYTLIDTAGIRRK  234 (435)
T ss_pred             CceEEEEEEEEEECCeeEEEEECCCCCCC
Confidence            9999964332   2557899999999754

>cd01854 YjeQ_engC YjeQ/EngC

Probab=99.86  E-value=2.9e-21  Score=180.83  Aligned_cols=143  Identities=21%  Similarity=0.251  Sum_probs=111.2

Q ss_pred             HHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHHHhcCceEEEeccccccc
Q 021210          115 KDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMG  189 (316)
Q Consensus       115 ~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~~vi~iSa~~g~g  189 (316)
                      +..++++|++++|+|++.+..+. ..+.+++     .++|+++|+||+||.+..+...|..++.+.|++++++|++++.|
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s~-~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~g  151 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFNP-RLLDRYLVAAEAAGIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGEG  151 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCCH-HHHHHHHHHHHHcCCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCcc
Confidence            34589999999999999876221 2334433     37899999999999876554556666666788999999999999


Q ss_pred             hhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCC-------CCceeeEEEEEeCC
Q 021210          190 TMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPR-------PGVTRVLKWVRFGK  262 (316)
Q Consensus       190 i~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~-------pgtT~~~~~~~~~~  262 (316)
                      +++|...+..                  -.++++|.+|||||||||+|++.....++..       .+||++.+.+.+..
T Consensus       152 i~~L~~~L~~------------------k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~  213 (287)
T cd01854         152 LDELREYLKG------------------KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPG  213 (287)
T ss_pred             HHHHHhhhcc------------------ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCC
Confidence            9888766432                  1489999999999999999998765554433       45999999998876


Q ss_pred             cEEEEeCCCcccCC
Q 021210          263 DLEFLDSPGIIPMR  276 (316)
Q Consensus       263 ~~~liDTPGi~~~~  276 (316)
                      ...|+||||+....
T Consensus       214 ~~~liDtPG~~~~~  227 (287)
T cd01854         214 GGLLIDTPGFREFG  227 (287)
T ss_pred             CCEEEECCCCCccC
Confidence            67899999997654

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.86  E-value=7.1e-21  Score=189.64  Aligned_cols=169  Identities=24%  Similarity=0.219  Sum_probs=122.6

Q ss_pred             cccccchH-------HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChHhHHHHHH
Q 021210          100 VQWYPGHI-------AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWAT  170 (316)
Q Consensus       100 i~~~Pgh~-------~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~~~~~~~  170 (316)
                      +-++||+.       ..+.++....+..+|++|+|+|++++.+..+..+..++.  ++|+++|+||+|+.....  +..+
T Consensus        90 l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~--~~~~  167 (472)
T PRK03003         90 VVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEA--DAAA  167 (472)
T ss_pred             EEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccch--hhHH
Confidence            45678752       234555667789999999999999887766666666664  689999999999864321  1122


Q ss_pred             HHHhcCc-eEEEeccccccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCC
Q 021210          171 YFAKQGT-KVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP  249 (316)
Q Consensus       171 ~~~~~g~-~vi~iSa~~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~p  249 (316)
                       +...|. .++++||++|.|+++|.+.+.....+...   ........++|+++|.||||||||+|+|++.....+++.|
T Consensus       168 -~~~~g~~~~~~iSA~~g~gi~eL~~~i~~~l~~~~~---~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~  243 (472)
T PRK03003        168 -LWSLGLGEPHPVSALHGRGVGDLLDAVLAALPEVPR---VGSASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVA  243 (472)
T ss_pred             -HHhcCCCCeEEEEcCCCCCcHHHHHHHHhhcccccc---cccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCC
Confidence             223442 46799999999999998776654322111   1111234689999999999999999999998877899999


Q ss_pred             CceeeEEE--EEe-CCcEEEEeCCCccc
Q 021210          250 GVTRVLKW--VRF-GKDLEFLDSPGIIP  274 (316)
Q Consensus       250 gtT~~~~~--~~~-~~~~~liDTPGi~~  274 (316)
                      |||++...  +.. +..+.|+||||+..
T Consensus       244 gtT~d~~~~~~~~~~~~~~l~DTaG~~~  271 (472)
T PRK03003        244 GTTVDPVDSLIELGGKTWRFVDTAGLRR  271 (472)
T ss_pred             CccCCcceEEEEECCEEEEEEECCCccc
Confidence            99998532  222 55688999999863

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.84  E-value=5.2e-20  Score=191.67  Aligned_cols=171  Identities=25%  Similarity=0.216  Sum_probs=124.1

Q ss_pred             cccccchH-------HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChHhHHHHHH
Q 021210          100 VQWYPGHI-------AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWAT  170 (316)
Q Consensus       100 i~~~Pgh~-------~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~~~~~~~  170 (316)
                      +-++||..       ..+.+++...++.+|++|+|+|++.++...+..+.+++.  ++|+++|+||+|+......   ..
T Consensus       327 liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~~---~~  403 (712)
T PRK09518        327 LVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEYD---AA  403 (712)
T ss_pred             EEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchhh---HH
Confidence            45667742       345666677889999999999999888777777777664  7899999999998653221   12


Q ss_pred             HHHhcC-ceEEEeccccccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCC
Q 021210          171 YFAKQG-TKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP  249 (316)
Q Consensus       171 ~~~~~g-~~vi~iSa~~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~p  249 (316)
                      .+..+| ..++++||++|.|+.+|.+.+......... ....-......+|+++|.||||||||+|+|++.+...+++.|
T Consensus       404 ~~~~lg~~~~~~iSA~~g~GI~eLl~~i~~~l~~~~~-~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~  482 (712)
T PRK09518        404 EFWKLGLGEPYPISAMHGRGVGDLLDEALDSLKVAEK-TSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLA  482 (712)
T ss_pred             HHHHcCCCCeEEEECCCCCCchHHHHHHHHhcccccc-cccccCCCCCcEEEEECCCCCCHHHHHHHHhCccccccCCCC
Confidence            233344 246899999999999998776654432110 000000123579999999999999999999999887889999


Q ss_pred             CceeeEEE--E-EeCCcEEEEeCCCccc
Q 021210          250 GVTRVLKW--V-RFGKDLEFLDSPGIIP  274 (316)
Q Consensus       250 gtT~~~~~--~-~~~~~~~liDTPGi~~  274 (316)
                      |||++...  + .-+..+.|+||||+..
T Consensus       483 gtT~d~~~~~~~~~~~~~~liDTaG~~~  510 (712)
T PRK09518        483 GTTRDPVDEIVEIDGEDWLFIDTAGIKR  510 (712)
T ss_pred             CCCcCcceeEEEECCCEEEEEECCCccc
Confidence            99999642  2 2356788999999964

>COG1162 Predicted GTPases [General function prediction only]

Probab=99.82  E-value=9.2e-20  Score=169.23  Aligned_cols=141  Identities=24%  Similarity=0.321  Sum_probs=111.2

Q ss_pred             HhhcCeEEEEEeCCCCCCCCcHHHHHHh-----CCCCEEEEEEccCCCChHhHH--HHHHHHHhcCceEEEeccccccch
Q 021210          118 LKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMADRN--AWATYFAKQGTKVIFSNGQLGMGT  190 (316)
Q Consensus       118 i~~aDlIl~VvDar~~~~~~~~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~--~~~~~~~~~g~~vi~iSa~~g~gi  190 (316)
                      +.+.|-+++|+-+-.|..+.. .+.++|     .+...++++||+||++..+..  ++...+...|+.++++|+++++|+
T Consensus        77 v~n~d~~iiIvs~~~P~~~~~-~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~~~  155 (301)
T COG1162          77 VANNDQAIIVVSLVDPDFNTN-LLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGDGL  155 (301)
T ss_pred             ccccceEEEEEeccCCCCCHH-HHHHHHHHHHHcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCcccH
Confidence            455888888888877754432 344443     366778899999999876644  567778889999999999999999


Q ss_pred             hhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCC-------CCceeeEEEEEeCCc
Q 021210          191 MKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPR-------PGVTRVLKWVRFGKD  263 (316)
Q Consensus       191 ~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~-------pgtT~~~~~~~~~~~  263 (316)
                      ++|.+.++   .+               ..+++|.+|||||||||+|.+.....++.+       -|||+...++.++.+
T Consensus       156 ~~l~~~l~---~~---------------~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~g  217 (301)
T COG1162         156 EELAELLA---GK---------------ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGG  217 (301)
T ss_pred             HHHHHHhc---CC---------------eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCC
Confidence            88877643   22               268999999999999999998665555443       369999999999877


Q ss_pred             EEEEeCCCcccCCC
Q 021210          264 LEFLDSPGIIPMRI  277 (316)
Q Consensus       264 ~~liDTPGi~~~~~  277 (316)
                      -+|+|||||....+
T Consensus       218 G~iiDTPGf~~~~l  231 (301)
T COG1162         218 GWIIDTPGFRSLGL  231 (301)
T ss_pred             CEEEeCCCCCccCc
Confidence            89999999998776

>PRK01889 GTPase RsgA; Reviewed

Probab=99.73  E-value=1.7e-17  Score=159.84  Aligned_cols=145  Identities=19%  Similarity=0.256  Sum_probs=105.0

Q ss_pred             HHhhcCeEEEEEeCCCCCCCCcHHHHHHh-----CCCCEEEEEEccCCCChHh-HHHHHHHHHhcCceEEEeccccccch
Q 021210          117 QLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMAD-RNAWATYFAKQGTKVIFSNGQLGMGT  190 (316)
Q Consensus       117 ~i~~aDlIl~VvDar~~~~~~~~~i~~~l-----~~k~~IlVlNK~DLv~~~~-~~~~~~~~~~~g~~vi~iSa~~g~gi  190 (316)
                      .++++|.+++|+++..++..  ..+.+++     .+.+.++|+||+||++..+ ..++...+ ..|++++++|++++.|+
T Consensus       109 iaANvD~vliV~s~~p~~~~--~~ldr~L~~a~~~~i~piIVLNK~DL~~~~~~~~~~~~~~-~~g~~Vi~vSa~~g~gl  185 (356)
T PRK01889        109 IAANVDTVFIVCSLNHDFNL--RRIERYLALAWESGAEPVIVLTKADLCEDAEEKIAEVEAL-APGVPVLAVSALDGEGL  185 (356)
T ss_pred             EEEeCCEEEEEEecCCCCCh--hHHHHHHHHHHHcCCCEEEEEEChhcCCCHHHHHHHHHHh-CCCCcEEEEECCCCccH
Confidence            37899999999999633322  2444443     3678899999999987532 22233333 45788999999999999


Q ss_pred             hhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCC-------CCceeeEEEEEeCCc
Q 021210          191 MKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPR-------PGVTRVLKWVRFGKD  263 (316)
Q Consensus       191 ~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~-------pgtT~~~~~~~~~~~  263 (316)
                      ++|...+..                 .-+++++|.+|+|||||+|.|.+.....++.+       .++|+..+++.+..+
T Consensus       186 ~~L~~~L~~-----------------g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~  248 (356)
T PRK01889        186 DVLAAWLSG-----------------GKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSG  248 (356)
T ss_pred             HHHHHHhhc-----------------CCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCC
Confidence            888776531                 12489999999999999999998665554432       347777777787767


Q ss_pred             EEEEeCCCcccCCCCCHH
Q 021210          264 LEFLDSPGIIPMRISDQA  281 (316)
Q Consensus       264 ~~liDTPGi~~~~~~~~~  281 (316)
                      ..++||||+....+.+.+
T Consensus       249 ~~l~DtpG~~~~~l~~~~  266 (356)
T PRK01889        249 GLLIDTPGMRELQLWDAE  266 (356)
T ss_pred             CeecCCCchhhhcccCch
Confidence            789999999876665543

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=99.65  E-value=3.2e-16  Score=134.33  Aligned_cols=96  Identities=25%  Similarity=0.320  Sum_probs=71.2

Q ss_pred             HHHHHHHHhcCceEEEeccccccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCccccc
Q 021210          166 NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPA  245 (316)
Q Consensus       166 ~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~v  245 (316)
                      ++|.+.|++.|++++.+|+++++|+++|++.++.   +               .++++|.+|||||||||+|++.....+
T Consensus         2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~---k---------------~~vl~G~SGvGKSSLiN~L~~~~~~~t   63 (161)
T PF03193_consen    2 EELLEQYEKLGYPVFFISAKTGEGIEELKELLKG---K---------------TSVLLGQSGVGKSSLINALLPEAKQKT   63 (161)
T ss_dssp             HHHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHTT---S---------------EEEEECSTTSSHHHHHHHHHTSS----
T ss_pred             HHHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhcC---C---------------EEEEECCCCCCHHHHHHHHHhhcchhh
Confidence            4678889999999999999999999988876433   1               379999999999999999998865555


Q ss_pred             CCC-------CCceeeEEEEEeCCcEEEEeCCCcccCCCCC
Q 021210          246 APR-------PGVTRVLKWVRFGKDLEFLDSPGIIPMRISD  279 (316)
Q Consensus       246 s~~-------pgtT~~~~~~~~~~~~~liDTPGi~~~~~~~  279 (316)
                      +.+       -+||+..+++.+..+..|||||||....+.+
T Consensus        64 ~~is~~~~rGkHTTt~~~l~~l~~g~~iIDTPGf~~~~l~~  104 (161)
T PF03193_consen   64 GEISEKTGRGKHTTTHRELFPLPDGGYIIDTPGFRSFGLWH  104 (161)
T ss_dssp             S--------------SEEEEEETTSEEEECSHHHHT--GCC
T ss_pred             hhhhcccCCCcccCCCeeEEecCCCcEEEECCCCCcccccc
Confidence            432       3699999999998889999999999877663

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.49  E-value=3.7e-14  Score=121.21  Aligned_cols=66  Identities=33%  Similarity=0.521  Sum_probs=49.7

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe---CCcEEEEeCCCcccCCCCCHHHHH
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMRISDQAAAI  284 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~~~~~~~~~~~~  284 (316)
                      ++|+++|.||||||||+|+|++.+ ..+++.||+|.+.....+   +..+.++||||+.+......++..
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v   69 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERV   69 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHH
Confidence            479999999999999999999998 789999999999754332   567999999999876555555443

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.49  E-value=6.7e-14  Score=136.08  Aligned_cols=62  Identities=35%  Similarity=0.485  Sum_probs=54.5

Q ss_pred             CccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe---CCcEEEEeCCCcccC
Q 021210          214 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPM  275 (316)
Q Consensus       214 ~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~~~  275 (316)
                      ...+++++++|.||||||||+|+|++++++.|+++||||||+....+   |-.+.|+||+|++..
T Consensus       214 lr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet  278 (454)
T COG0486         214 LREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRET  278 (454)
T ss_pred             hhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccC
Confidence            34578999999999999999999999999999999999999865443   557899999999953

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.42  E-value=4e-13  Score=125.46  Aligned_cols=71  Identities=28%  Similarity=0.477  Sum_probs=57.6

Q ss_pred             CccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe---CCcEEEEeCCCcccCCCCCHHHHHH
Q 021210          214 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMRISDQAAAIK  285 (316)
Q Consensus       214 ~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~~~~~~~~~~~~~  285 (316)
                      .+...+|.+.|+||||||||+++|.+.+ ..++++|+||+++...++   +..+++|||||+++-.+++.++-.+
T Consensus       165 dp~~pTivVaG~PNVGKSSlv~~lT~Ak-pEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~  238 (346)
T COG1084         165 DPDLPTIVVAGYPNVGKSSLVRKLTTAK-PEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIER  238 (346)
T ss_pred             CCCCCeEEEecCCCCcHHHHHHHHhcCC-CccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHH
Confidence            3445689999999999999999999887 699999999999876655   3468999999999766655544444

>COG1159 Era GTPase [General function prediction only]

Probab=99.42  E-value=2e-13  Score=126.15  Aligned_cols=59  Identities=34%  Similarity=0.591  Sum_probs=51.0

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE-EEEEe--CCcEEEEeCCCcccCCC
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRF--GKDLEFLDSPGIIPMRI  277 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~-~~~~~--~~~~~liDTPGi~~~~~  277 (316)
                      -|++||+||||||||+|+|.|.+.+.+|+.|.|||.. +.+..  +.++.++|||||..++.
T Consensus         8 fVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~   69 (298)
T COG1159           8 FVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKH   69 (298)
T ss_pred             EEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcch
Confidence            4899999999999999999999999999999999994 33333  45789999999997643

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.39  E-value=6.1e-14  Score=136.03  Aligned_cols=58  Identities=40%  Similarity=0.611  Sum_probs=51.1

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE---EEeCCcEEEEeCCCcccCC
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW---VRFGKDLEFLDSPGIIPMR  276 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~---~~~~~~~~liDTPGi~~~~  276 (316)
                      .|++||+||||||||+|+|.+++.+.|++.||+|||...   ...+..+.+|||+|+.+..
T Consensus         5 ~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~   65 (444)
T COG1160           5 VVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGD   65 (444)
T ss_pred             EEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCC
Confidence            599999999999999999999999999999999999643   3346779999999998544

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.35  E-value=1.2e-12  Score=127.50  Aligned_cols=60  Identities=37%  Similarity=0.527  Sum_probs=53.2

Q ss_pred             ccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe---CCcEEEEeCCCccc
Q 021210          215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP  274 (316)
Q Consensus       215 ~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~~  274 (316)
                      ..+++|+++|+||||||||+|+|.++.+..|++.||||||.....+   |..+.|+||+|++.
T Consensus       266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe  328 (531)
T KOG1191|consen  266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIRE  328 (531)
T ss_pred             hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEecccccc
Confidence            3468999999999999999999999999999999999999643333   66799999999997

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.34  E-value=1.4e-12  Score=105.13  Aligned_cols=59  Identities=37%  Similarity=0.612  Sum_probs=49.7

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEE--Ee-CCcEEEEeCCCcccCCC
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-GKDLEFLDSPGIIPMRI  277 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~--~~-~~~~~liDTPGi~~~~~  277 (316)
                      +|+++|.+|+|||||+|+|++.+...++..+++|+.....  .. +..+.++||||+.+...
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~   62 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGES   62 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSH
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccch
Confidence            5899999999999999999998888999999999998432  33 44678999999986543

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.34  E-value=1.4e-11  Score=107.82  Aligned_cols=129  Identities=22%  Similarity=0.148  Sum_probs=96.1

Q ss_pred             CCcchhhhhhccccCCcceEEEe--ccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC-
Q 021210           72 GSIEAYEEECDWADLDADLYYWT--KSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG-  146 (316)
Q Consensus        72 ~~~g~~~e~e~~~~~d~~~~~~~--~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~-  146 (316)
                      +.|....|++.+.+++.....+.  ...+.  +-++||| .++.+++...+..+|++|+|+|+..+......+....+. 
T Consensus        42 ~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~-~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~  120 (188)
T PF00009_consen   42 FLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGH-EDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRE  120 (188)
T ss_dssp             HHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSS-HHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHH
T ss_pred             cccccchhhhcccccccccccccccccccceeecccccc-cceeecccceecccccceeeeecccccccccccccccccc
Confidence            35666788888999999998877  44444  7789999 669999999999999999999999887655444444432 


Q ss_pred             -CCCEEEEEEccCCCChHh---HHHHHHHH-HhcC------ceEEEeccccccchhhhHHHHHHhh
Q 021210          147 -NRKRILVLNREDMISMAD---RNAWATYF-AKQG------TKVIFSNGQLGMGTMKLSRLAKALA  201 (316)
Q Consensus       147 -~k~~IlVlNK~DLv~~~~---~~~~~~~~-~~~g------~~vi~iSa~~g~gi~~L~~~L~~l~  201 (316)
                       +.|+++|+||+|+.....   .+++.+.+ +..+      .+++++||.+|.|+++|.+.+.++.
T Consensus       121 ~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~  186 (188)
T PF00009_consen  121 LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELL  186 (188)
T ss_dssp             TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred             cccceEEeeeeccchhhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence             678999999999983221   22233222 2221      4699999999999999998877653

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.29  E-value=7.9e-12  Score=119.92  Aligned_cols=125  Identities=20%  Similarity=0.169  Sum_probs=102.4

Q ss_pred             CCCCCCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCC----------C
Q 021210           67 SNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIP----------L  134 (316)
Q Consensus        67 ~~~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~----------~  134 (316)
                      +-++=..|-...|||.+.|+|.++..|.++...  |-+.||| ..+.++|...+++||+.|+|+|++.+          .
T Consensus        54 f~fawvlD~tkeERerGvTi~~~~~~fet~k~~~tIiDaPGH-rdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQ  132 (428)
T COG5256          54 FKFAWVLDKTKEERERGVTIDVAHSKFETDKYNFTIIDAPGH-RDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQ  132 (428)
T ss_pred             eEEEEEecCChhHHhcceEEEEEEEEeecCCceEEEeeCCch-HHHHHHhhcchhhccEEEEEEECCCCccccccccCCc
Confidence            456667888899999999999999999999884  8899998 89999999999999999999999876          3


Q ss_pred             CCCcHHHHHHhCCCCEEEEEEccCCCChHh--HHH----HHHHHHhcC-----ceEEEeccccccchhh
Q 021210          135 STTHPLMDQWLGNRKRILVLNREDMISMAD--RNA----WATYFAKQG-----TKVIFSNGQLGMGTMK  192 (316)
Q Consensus       135 ~~~~~~i~~~l~~k~~IlVlNK~DLv~~~~--~~~----~~~~~~~~g-----~~vi~iSa~~g~gi~~  192 (316)
                      +.+|..+.+.++.+.+|+++||||+++.++  .++    .....+..|     ..++|+|+..|+|+.+
T Consensus       133 trEH~~La~tlGi~~lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~  201 (428)
T COG5256         133 TREHAFLARTLGIKQLIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK  201 (428)
T ss_pred             hhHHHHHHHhcCCceEEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence            556778888889999999999999997543  111    222223344     4589999999999765

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.28  E-value=5e-12  Score=111.16  Aligned_cols=59  Identities=31%  Similarity=0.543  Sum_probs=53.2

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCc-ccccCCCCCceeeEEEEEeCCcEEEEeCCCcccCC
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMR  276 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~-~~~vs~~pgtT~~~~~~~~~~~~~liDTPGi~~~~  276 (316)
                      ..|+|+|++|||||||||+|++++ .+.+|..||.|+.+..+.++..+.++|-||+--.+
T Consensus        25 ~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyAk   84 (200)
T COG0218          25 PEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAK   84 (200)
T ss_pred             cEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCcEEEEeCCCccccc
Confidence            469999999999999999999965 58999999999999999998889999999996443

>COG2262 HflX GTPases [General function prediction only]

Probab=99.24  E-value=3.1e-12  Score=122.68  Aligned_cols=191  Identities=21%  Similarity=0.227  Sum_probs=105.7

Q ss_pred             CCCCcchhhhhhccc---cCCcceEEEeccccccccccchHHHHHHHHH-HHHhhcCeEEEEEeCCCCCCCCcHHHH--H
Q 021210           70 SNGSIEAYEEECDWA---DLDADLYYWTKSLRPVQWYPGHIAKTEKELK-DQLKLMDVVIEVRDARIPLSTTHPLMD--Q  143 (316)
Q Consensus        70 ~~~~~g~~~e~e~~~---~~d~~~~~~~~~~~~i~~~Pgh~~~~~r~l~-~~i~~aDlIl~VvDar~~~~~~~~~i~--~  143 (316)
                      ..|..|-++-+|...   ..+++.++|.+.+.|.|.++     .++.+. +.+++..+||.++.-|...-....+++  +
T Consensus        49 p~~~iG~GK~eEi~~~v~~~~ad~VIf~~~LsP~Q~~N-----Le~~l~~kVIDRt~LILdIFa~RA~S~EgkLQVeLAq  123 (411)
T COG2262          49 PKTYIGSGKLEEIAEAVEETGADLVIFDHELSPSQLRN-----LEKELGVKVIDRTQLILDIFAQRARSREGKLQVELAQ  123 (411)
T ss_pred             cceecCcchHHHHHHHHHhcCCCEEEECCcCCHHHHHH-----HHHHHCCEEEehHhHHHHHHHHHhccchhhhhhhHHh
Confidence            345567666666654   45778889998888766322     333332 345667777777765543222222221  1


Q ss_pred             HhCCCCEEEEEEccCCCChHhHHHHHHHHHhcCceEEEeccccccc--------------hhhhHHHHHHhhhhhhhhhc
Q 021210          144 WLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMG--------------TMKLSRLAKALASDVNVKRR  209 (316)
Q Consensus       144 ~l~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~~vi~iSa~~g~g--------------i~~L~~~L~~l~~~~~~~r~  209 (316)
                      +--..|.+             ...| ..+.+.|..+    ...|-|              +.+|++.++.+.......|+
T Consensus       124 L~Y~lpRl-------------~~~~-~~l~~~Gggi----G~rGpGE~~lE~drR~ir~rI~~i~~eLe~v~~~R~~~R~  185 (411)
T COG2262         124 LRYELPRL-------------VGSG-SHLSRLGGGI----GFRGPGETQLETDRRRIRRRIAKLKRELENVEKAREPRRK  185 (411)
T ss_pred             hhhhhhHh-------------Hhhh-hhcccccCCC----CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            11011111             0001 1111111000    111222              22334444444333333333


Q ss_pred             ccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEe--CCcEEEEeCCCcccCCCCCHHHHHH
Q 021210          210 SKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF--GKDLEFLDSPGIIPMRISDQAAAIK  285 (316)
Q Consensus       210 ~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~--~~~~~liDTPGi~~~~~~~~~~~~~  285 (316)
                      .+.. ..-..|+++||+|+|||||+|+|++.. ..+.+..++|.+...  +.+  +..+.|.||.||+...+++..++++
T Consensus       186 ~R~~-~~~p~vaLvGYTNAGKSTL~N~LT~~~-~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFk  263 (411)
T COG2262         186 KRSR-SGIPLVALVGYTNAGKSTLFNALTGAD-VYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFK  263 (411)
T ss_pred             hhcc-cCCCeEEEEeeccccHHHHHHHHhccC-eeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHH
Confidence            3221 223469999999999999999999765 577777787777433  333  4579999999999888878777777

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.23  E-value=4.5e-11  Score=118.54  Aligned_cols=125  Identities=18%  Similarity=0.147  Sum_probs=95.5

Q ss_pred             CCCCCCCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC---------
Q 021210           66 NSNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL---------  134 (316)
Q Consensus        66 ~~~~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~---------  134 (316)
                      .++++.+.|....|++.++|+|..+..|.+..+.  +.+.||| .+|.+++...+..+|.+|+|+|+..+.         
T Consensus        53 ~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh-~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~  131 (447)
T PLN00043         53 SFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGH-RDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDG  131 (447)
T ss_pred             chhhhhhhcCCHhHHhcCceEEEEEEEecCCCEEEEEEECCCH-HHHHHHHHhhhhhccEEEEEEEcccCceecccCCCc
Confidence            4667788999999999999999999999887665  7799999 889999999999999999999998752         


Q ss_pred             -CCCcHHHHHHhCCCCEEEEEEccCCCCh----Hh----HHHHHHHHHhcC-----ceEEEeccccccchh
Q 021210          135 -STTHPLMDQWLGNRKRILVLNREDMISM----AD----RNAWATYFAKQG-----TKVIFSNGQLGMGTM  191 (316)
Q Consensus       135 -~~~~~~i~~~l~~k~~IlVlNK~DLv~~----~~----~~~~~~~~~~~g-----~~vi~iSa~~g~gi~  191 (316)
                       +.++..+...++.+++|+++||+|+.+.    ..    .++..+++.+.|     ..++++||.+|+|+.
T Consensus       132 qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~  202 (447)
T PLN00043        132 QTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMI  202 (447)
T ss_pred             hHHHHHHHHHHcCCCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEecccccccc
Confidence             1122223333445567889999998732    11    233444555555     458999999999975

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.20  E-value=1.4e-10  Score=115.89  Aligned_cols=128  Identities=15%  Similarity=0.180  Sum_probs=98.0

Q ss_pred             CCCCCCCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC---CcHH
Q 021210           66 NSNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST---THPL  140 (316)
Q Consensus        66 ~~~~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~---~~~~  140 (316)
                      ..+++.+.|....|++.++|+|..+.+|......  +-++||| .++.+++...+..+|++++|+|+..+...   .+..
T Consensus        75 ~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~~~~i~~iDTPGh-~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~  153 (474)
T PRK05124         75 KLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGH-EQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSF  153 (474)
T ss_pred             ccchhhhccCChHHhhcCCCeEeeEEEeccCCcEEEEEECCCc-HHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHH
Confidence            3567889999999999999999999888776554  7789998 67888899899999999999999987643   4445


Q ss_pred             HHHHhCCCCEEEEEEccCCCChHh--HHHHHHH----HHhcC----ceEEEeccccccchhhhH
Q 021210          141 MDQWLGNRKRILVLNREDMISMAD--RNAWATY----FAKQG----TKVIFSNGQLGMGTMKLS  194 (316)
Q Consensus       141 i~~~l~~k~~IlVlNK~DLv~~~~--~~~~~~~----~~~~g----~~vi~iSa~~g~gi~~L~  194 (316)
                      +...++.+++|+++||+|+++..+  .++..+.    +...+    .+++++||++|.|+.++.
T Consensus       154 l~~~lg~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~  217 (474)
T PRK05124        154 IATLLGIKHLVVAVNKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS  217 (474)
T ss_pred             HHHHhCCCceEEEEEeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence            556666678899999999985322  2222222    22222    578999999999987643

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.19  E-value=1.7e-10  Score=113.25  Aligned_cols=125  Identities=17%  Similarity=0.227  Sum_probs=95.3

Q ss_pred             CCCCCCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc---HHH
Q 021210           67 SNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH---PLM  141 (316)
Q Consensus        67 ~~~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~---~~i  141 (316)
                      +.++.+.|-...|++.+.|+|..+.+|....+.  +-++||| .++.+++...+..+|++|+|+|+..+.....   ..+
T Consensus        49 ~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~~~liDtPGh-~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~  127 (406)
T TIGR02034        49 IDLALLVDGLQAEREQGITIDVAYRYFSTDKRKFIVADTPGH-EQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYI  127 (406)
T ss_pred             eeeeeeccCChHHhcCCcCeEeeeEEEccCCeEEEEEeCCCH-HHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHH
Confidence            556778899999999999999999998776554  7789999 7788899999999999999999998775443   344


Q ss_pred             HHHhCCCCEEEEEEccCCCChHh--HH----HHHHHHHhcC---ceEEEeccccccchhh
Q 021210          142 DQWLGNRKRILVLNREDMISMAD--RN----AWATYFAKQG---TKVIFSNGQLGMGTMK  192 (316)
Q Consensus       142 ~~~l~~k~~IlVlNK~DLv~~~~--~~----~~~~~~~~~g---~~vi~iSa~~g~gi~~  192 (316)
                      ...++.+++++++||+|+.+..+  .+    ++.+++.+.+   .+++++||++|+|+++
T Consensus       128 ~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       128 ASLLGIRHVVLAVNKMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHcCCCcEEEEEEecccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence            44555667899999999985322  11    2222233334   3589999999999875

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.17  E-value=5e-11  Score=105.17  Aligned_cols=59  Identities=25%  Similarity=0.402  Sum_probs=47.8

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccCC-CCCceeeEEEEE---eCCcEEEEeCCCcccCCC
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAP-RPGVTRVLKWVR---FGKDLEFLDSPGIIPMRI  277 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~-~pgtT~~~~~~~---~~~~~~liDTPGi~~~~~  277 (316)
                      +|+++|.||+|||||+|+|++++...++. .+++|++.+...   .+..+.++||||+.....
T Consensus         2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~   64 (196)
T cd01852           2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSV   64 (196)
T ss_pred             EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccC
Confidence            68999999999999999999988766654 468888865443   256799999999987643

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.16  E-value=2.3e-10  Score=102.02  Aligned_cols=130  Identities=18%  Similarity=0.191  Sum_probs=94.1

Q ss_pred             cCCCCCCCCCCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH
Q 021210           62 WHGGNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP  139 (316)
Q Consensus        62 ~~~~~~~~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~  139 (316)
                      ..++.++.+.++|....|++.+.|+|.....|...-++  +-++||| .++.+.+...+..+|++|+|+|+..+......
T Consensus        41 ~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~liDTpG~-~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~  119 (208)
T cd04166          41 TGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFIIADTPGH-EQYTRNMVTGASTADLAILLVDARKGVLEQTR  119 (208)
T ss_pred             cCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEEEEECCcH-HHHHHHHHHhhhhCCEEEEEEECCCCccHhHH
Confidence            34456677788999999999999999999888666554  7789999 66777788889999999999999987644333


Q ss_pred             HHHHH---hCCCCEEEEEEccCCCChHh--H----HHHHHHHHhcC---ceEEEeccccccchhh
Q 021210          140 LMDQW---LGNRKRILVLNREDMISMAD--R----NAWATYFAKQG---TKVIFSNGQLGMGTMK  192 (316)
Q Consensus       140 ~i~~~---l~~k~~IlVlNK~DLv~~~~--~----~~~~~~~~~~g---~~vi~iSa~~g~gi~~  192 (316)
                      ....+   ...+++|+|+||+|+....+  .    .+..+.+...+   .+++++||++|.|+.+
T Consensus       120 ~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~  184 (208)
T cd04166         120 RHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVS  184 (208)
T ss_pred             HHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence            33222   22345788999999975321  1    12222333444   3489999999999865

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>TIGR00436 era GTP-binding protein Era

Probab=99.16  E-value=5.4e-11  Score=110.40  Aligned_cols=57  Identities=32%  Similarity=0.537  Sum_probs=47.9

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE-EEEe--CCcEEEEeCCCcccC
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK-WVRF--GKDLEFLDSPGIIPM  275 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~-~~~~--~~~~~liDTPGi~~~  275 (316)
                      +|+++|+||||||||+|+|++.+...+++.|+||++.. .+..  +..+.++||||+...
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~   61 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEK   61 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCC
Confidence            58999999999999999999999888999999999843 2222  345889999999754

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.16  E-value=9.9e-11  Score=112.74  Aligned_cols=184  Identities=20%  Similarity=0.231  Sum_probs=102.0

Q ss_pred             CCCCcchhhhhhccc---cCCcceEEEeccccccccccchHHHHHHHHH-HHHhhcCeEEEEEeCCCCCCCCcHHHHHH-
Q 021210           70 SNGSIEAYEEECDWA---DLDADLYYWTKSLRPVQWYPGHIAKTEKELK-DQLKLMDVVIEVRDARIPLSTTHPLMDQW-  144 (316)
Q Consensus        70 ~~~~~g~~~e~e~~~---~~d~~~~~~~~~~~~i~~~Pgh~~~~~r~l~-~~i~~aDlIl~VvDar~~~~~~~~~i~~~-  144 (316)
                      ..+..|-++-+|...   ..+++.++|.+.+.|.|.     ....+.+. +.+++..+||.++..|........+++-. 
T Consensus        46 ~~~~~g~gk~~e~~~~~~~~~~~~vi~~~~l~p~q~-----~nl~~~~~~~v~Dr~~lil~iF~~ra~t~e~klqv~la~  120 (351)
T TIGR03156        46 PATYIGKGKVEEIAELVEELEADLVIFDHELSPSQE-----RNLEKALGCRVIDRTGLILDIFAQRARTHEGKLQVELAQ  120 (351)
T ss_pred             CCeEecccHHHHHHHHHHhcCCCEEEECCCCCHHHH-----HHHHHHhCCcccchHHHHHHHHHHhccChHHHHHHHHHh
Confidence            445566677777665   568889999988877662     22333332 55788888888887776433323232221 


Q ss_pred             -hCCCCEEEEEEccCCCChHhHHHHHHHHHhcC--ceE-------EEecc-ccccchhhhHHHHHHhhhhhhhhhcccCC
Q 021210          145 -LGNRKRILVLNREDMISMADRNAWATYFAKQG--TKV-------IFSNG-QLGMGTMKLSRLAKALASDVNVKRRSKGL  213 (316)
Q Consensus       145 -l~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g--~~v-------i~iSa-~~g~gi~~L~~~L~~l~~~~~~~r~~~~~  213 (316)
                       -...|.+             ...|.. +.+++  +.+       +.++. .-..-+.+|++.++.+.......+..+ .
T Consensus       121 l~~~l~r~-------------~~~~~~-l~~~~~~i~~~g~gE~~~~~~~~~i~~ri~~l~~~L~~~~~~~~~~r~~r-~  185 (351)
T TIGR03156       121 LKYLLPRL-------------VGGWTH-LSRQGGGIGTRGPGETQLETDRRLIRERIAQLKKELEKVEKQRERQRRRR-K  185 (351)
T ss_pred             ccchhhhh-------------hhhHHH-HHhhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-c
Confidence             1111211             111222 22211  111       00000 000012233333333332222112111 1


Q ss_pred             CccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEe--CCcEEEEeCCCccc
Q 021210          214 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF--GKDLEFLDSPGIIP  274 (316)
Q Consensus       214 ~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~--~~~~~liDTPGi~~  274 (316)
                      .....+|+++|+||||||||+|+|++.. ..+++.+|+|++...  +.+  +..+.|+||||+..
T Consensus       186 ~~~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~  249 (351)
T TIGR03156       186 RADVPTVALVGYTNAGKSTLFNALTGAD-VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIR  249 (351)
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCccccCCEEEEEEeCCCceEEEEecCcccc
Confidence            1234789999999999999999999887 678889999998643  333  35789999999954

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.15  E-value=1.6e-10  Score=114.72  Aligned_cols=127  Identities=20%  Similarity=0.209  Sum_probs=95.6

Q ss_pred             CCCCCCCCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC--------
Q 021210           65 GNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL--------  134 (316)
Q Consensus        65 ~~~~~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~--------  134 (316)
                      +..+++.+.|....|++.+.++|..+..|......  +.+.||| .++.+++...+..+|++++|+|+..+.        
T Consensus        52 ~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~~i~lIDtPGh-~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~  130 (446)
T PTZ00141         52 GSFKYAWVLDKLKAERERGITIDIALWKFETPKYYFTIIDAPGH-RDFIKNMITGTSQADVAILVVASTAGEFEAGISKD  130 (446)
T ss_pred             cchhhhhhhcCChHHHhcCEeEEeeeEEEccCCeEEEEEECCCh-HHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCC
Confidence            45667778999999999999999999888876554  7899999 789999999999999999999998764        


Q ss_pred             --CCCcHHHHHHhCCCCEEEEEEccC--CCCh--Hh----HHHHHHHHHhcC-----ceEEEeccccccchhh
Q 021210          135 --STTHPLMDQWLGNRKRILVLNRED--MISM--AD----RNAWATYFAKQG-----TKVIFSNGQLGMGTMK  192 (316)
Q Consensus       135 --~~~~~~i~~~l~~k~~IlVlNK~D--Lv~~--~~----~~~~~~~~~~~g-----~~vi~iSa~~g~gi~~  192 (316)
                        +.++..+...++.+++|+++||+|  +++.  +.    .++..+.+...|     .+++++|+.+|+|+.+
T Consensus       131 ~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        131 GQTREHALLAFTLGVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             ccHHHHHHHHHHcCCCeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence              223334444455566789999999  4332  22    223333444444     4589999999999864

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.15  E-value=4.9e-10  Score=99.34  Aligned_cols=119  Identities=18%  Similarity=0.083  Sum_probs=87.8

Q ss_pred             CCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--C
Q 021210           72 GSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--N  147 (316)
Q Consensus        72 ~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~  147 (316)
                      ..|-...|++.+.+++.....|......  +-++||| .++.+.+...+..+|++++|+|+..+.......+..++.  +
T Consensus        39 ~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~-~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~  117 (195)
T cd01884          39 EIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGH-ADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVG  117 (195)
T ss_pred             cccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCH-HHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcC
Confidence            3566678999999999988888765443  6789999 578888999999999999999999876655444444433  4


Q ss_pred             CC-EEEEEEccCCCChHhHH-----HHHHHHHhcC-----ceEEEeccccccchh
Q 021210          148 RK-RILVLNREDMISMADRN-----AWATYFAKQG-----TKVIFSNGQLGMGTM  191 (316)
Q Consensus       148 k~-~IlVlNK~DLv~~~~~~-----~~~~~~~~~g-----~~vi~iSa~~g~gi~  191 (316)
                      .| +|+++||+|+++..+..     +..+.+.+.|     ..++++||++|.++.
T Consensus       118 ~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~~  172 (195)
T cd01884         118 VPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEGD  172 (195)
T ss_pred             CCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCCC
Confidence            55 77999999997543322     2333344444     468999999998853

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.13  E-value=5e-10  Score=115.68  Aligned_cols=127  Identities=20%  Similarity=0.223  Sum_probs=96.7

Q ss_pred             CCCCCCCCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc---H
Q 021210           65 GNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH---P  139 (316)
Q Consensus        65 ~~~~~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~---~  139 (316)
                      +.++++.++|....|++.+.|+|..+..|......  +-++||| .++.+++...+..+|++++|+|+..+.....   .
T Consensus        71 ~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~~~~~liDtPG~-~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~  149 (632)
T PRK05506         71 DEIDLALLVDGLAAEREQGITIDVAYRYFATPKRKFIVADTPGH-EQYTRNMVTGASTADLAIILVDARKGVLTQTRRHS  149 (632)
T ss_pred             CcceeeeeccCCHHHHhCCcCceeeeeEEccCCceEEEEECCCh-HHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHH
Confidence            45778888999999999999999999888876554  7789999 6788889999999999999999988765443   3


Q ss_pred             HHHHHhCCCCEEEEEEccCCCCh--HhHHHHH----HHHHhcC---ceEEEeccccccchhh
Q 021210          140 LMDQWLGNRKRILVLNREDMISM--ADRNAWA----TYFAKQG---TKVIFSNGQLGMGTMK  192 (316)
Q Consensus       140 ~i~~~l~~k~~IlVlNK~DLv~~--~~~~~~~----~~~~~~g---~~vi~iSa~~g~gi~~  192 (316)
                      .+...++.+++++++||+|+++.  +..++..    +++.+.+   ..++++||++|.|+.+
T Consensus       150 ~~~~~~~~~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        150 FIASLLGIRHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHhCCCeEEEEEEecccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            34444555788999999999852  2222222    2223444   3589999999999874

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.13  E-value=1.3e-10  Score=106.94  Aligned_cols=63  Identities=27%  Similarity=0.360  Sum_probs=52.9

Q ss_pred             CccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe---CCcEEEEeCCCcccCC
Q 021210          214 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMR  276 (316)
Q Consensus       214 ~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~~~~  276 (316)
                      ...+++|+++|.+|||||||+|+|++.....++..+++|+..+.+..   +..+.++||||+....
T Consensus        28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~   93 (249)
T cd01853          28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESV   93 (249)
T ss_pred             ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcch
Confidence            34578999999999999999999999988888888888888765443   4568999999998653

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>COG2262 HflX GTPases [General function prediction only]

Probab=99.08  E-value=5.5e-10  Score=107.35  Aligned_cols=149  Identities=21%  Similarity=0.218  Sum_probs=104.8

Q ss_pred             CCCCeeEEecCCCCCcCCCCCC-CCCCCcch-hhhhhccccCCcceE----------EEeccccccccccchHHHHHHHH
Q 021210           47 SSAPIIQTVGGKQSSWHGGNSN-NSNGSIEA-YEEECDWADLDADLY----------YWTKSLRPVQWYPGHIAKTEKEL  114 (316)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~-~~e~e~~~~~d~~~~----------~~~~~~~~i~~~Pgh~~~~~r~l  114 (316)
                      +.-|.|.++|-.--    |+.- +..+++.. ..++.++.|+|+..+          .++++..+|++.|.+...+++.+
T Consensus       190 ~~~p~vaLvGYTNA----GKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksT  265 (411)
T COG2262         190 SGIPLVALVGYTNA----GKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKST  265 (411)
T ss_pred             cCCCeEEEEeeccc----cHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHH
Confidence            45578888885210    1111 22333333 457888888887654          45677889999999999999999


Q ss_pred             HHHHhhcCeEEEEEeCCCCCCCCcHH----HHHHh--CCCCEEEEEEccCCCChHhHHHHHHHHHhcCceEEEecccccc
Q 021210          115 KDQLKLMDVVIEVRDARIPLSTTHPL----MDQWL--GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGM  188 (316)
Q Consensus       115 ~~~i~~aDlIl~VvDar~~~~~~~~~----i~~~l--~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~~vi~iSa~~g~  188 (316)
                      .+.+..||++++|||+.+|....+.+    +..-+  ..+|.|+|+||+|++........   +.......+++||++|.
T Consensus       266 LEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~~~~---~~~~~~~~v~iSA~~~~  342 (411)
T COG2262         266 LEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEILAE---LERGSPNPVFISAKTGE  342 (411)
T ss_pred             HHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhhhhh---hhhcCCCeEEEEeccCc
Confidence            99999999999999999984333222    11222  26899999999999876652221   22111258999999999


Q ss_pred             chhhhHHHHHHhhh
Q 021210          189 GTMKLSRLAKALAS  202 (316)
Q Consensus       189 gi~~L~~~L~~l~~  202 (316)
                      |++.|++.|.....
T Consensus       343 gl~~L~~~i~~~l~  356 (411)
T COG2262         343 GLDLLRERIIELLS  356 (411)
T ss_pred             CHHHHHHHHHHHhh
Confidence            99999988877654

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.08  E-value=1.3e-10  Score=107.70  Aligned_cols=61  Identities=26%  Similarity=0.522  Sum_probs=52.2

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe---CCcEEEEeCCCcccCC
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMR  276 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~~~~  276 (316)
                      ..++|++||.||||||||.|.+.+.+.+.++..++|||.-..--+   ..++.++||||+....
T Consensus        71 k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~  134 (379)
T KOG1423|consen   71 KSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKK  134 (379)
T ss_pred             eEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccc
Confidence            467899999999999999999999999999999999998544333   3468899999998653

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.08  E-value=4.2e-10  Score=110.91  Aligned_cols=125  Identities=15%  Similarity=0.087  Sum_probs=92.1

Q ss_pred             CCCCCCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCC--CCCCCcHH--
Q 021210           67 SNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARI--PLSTTHPL--  140 (316)
Q Consensus        67 ~~~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~--~~~~~~~~--  140 (316)
                      .+++.+.|....|++.+.|+|..+..|......  +-++||| .++.+++...+..+|++|+|+|+.+  +.......  
T Consensus        53 ~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~~i~liDtpG~-~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~  131 (425)
T PRK12317         53 FKFAWVMDRLKEERERGVTIDLAHKKFETDKYYFTIVDCPGH-RDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHV  131 (425)
T ss_pred             cchhhhhccCHhHhhcCccceeeeEEEecCCeEEEEEECCCc-ccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHH
Confidence            446677899999999999999999988776554  6789999 6788888888999999999999987  44333222  


Q ss_pred             -HHHHhCCCCEEEEEEccCCCChHh------HHHHHHHHHhcC-----ceEEEeccccccchhh
Q 021210          141 -MDQWLGNRKRILVLNREDMISMAD------RNAWATYFAKQG-----TKVIFSNGQLGMGTMK  192 (316)
Q Consensus       141 -i~~~l~~k~~IlVlNK~DLv~~~~------~~~~~~~~~~~g-----~~vi~iSa~~g~gi~~  192 (316)
                       +...++.+++++++||+|+.+..+      .++..+.+...+     ..++++||++|.|+++
T Consensus       132 ~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~  195 (425)
T PRK12317        132 FLARTLGINQLIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVK  195 (425)
T ss_pred             HHHHHcCCCeEEEEEEccccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccc
Confidence             222233457899999999985321      122333344444     3589999999999986

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.07  E-value=3.5e-10  Score=112.34  Aligned_cols=59  Identities=36%  Similarity=0.486  Sum_probs=50.1

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEE--Ee-CCcEEEEeCCCccc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-GKDLEFLDSPGIIP  274 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~--~~-~~~~~liDTPGi~~  274 (316)
                      .+++|+++|+||||||||+|+|++.+...+++.||||++....  .+ +..+.++||||+..
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~  275 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRE  275 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCC
Confidence            4578999999999999999999998877899999999986432  33 45689999999974

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.07  E-value=6.4e-10  Score=109.73  Aligned_cols=126  Identities=15%  Similarity=0.115  Sum_probs=93.8

Q ss_pred             CCCCCCCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----
Q 021210           66 NSNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----  138 (316)
Q Consensus        66 ~~~~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-----  138 (316)
                      ...++.+.|....|++.+.|+|..+..|......  +-+.||| .++.+.+...+..+|++++|+|+.++.....     
T Consensus        53 ~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~~i~iiDtpGh-~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~  131 (426)
T TIGR00483        53 SFEFAWVMDRLKEERERGVTIDVAHWKFETDKYEVTIVDCPGH-RDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTRE  131 (426)
T ss_pred             ccchhhhhccCHHHhhcCceEEEEEEEEccCCeEEEEEECCCH-HHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHH
Confidence            3556778899999999999999999988876554  6789998 6788888888999999999999988732211     


Q ss_pred             -HHHHHHhCCCCEEEEEEccCCCC--hHh----HHHHHHHHHhcC-----ceEEEeccccccchhh
Q 021210          139 -PLMDQWLGNRKRILVLNREDMIS--MAD----RNAWATYFAKQG-----TKVIFSNGQLGMGTMK  192 (316)
Q Consensus       139 -~~i~~~l~~k~~IlVlNK~DLv~--~~~----~~~~~~~~~~~g-----~~vi~iSa~~g~gi~~  192 (316)
                       ..+...+..+++++|+||+|+.+  .+.    .+++.+++...+     ..++++||++|.|+.+
T Consensus       132 ~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~  197 (426)
T TIGR00483       132 HAFLARTLGINQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK  197 (426)
T ss_pred             HHHHHHHcCCCeEEEEEEChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence             12333344567899999999974  222    223334444444     4689999999999875

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>cd01889 SelB_euk SelB subfamily

Probab=99.07  E-value=2.2e-09  Score=94.12  Aligned_cols=127  Identities=19%  Similarity=0.177  Sum_probs=84.8

Q ss_pred             CcchhhhhhccccCCcceEEEecc--------------cc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC
Q 021210           73 SIEAYEEECDWADLDADLYYWTKS--------------LR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST  136 (316)
Q Consensus        73 ~~g~~~e~e~~~~~d~~~~~~~~~--------------~~--~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~  136 (316)
                      .|....|++.+.|++.....+.-.              ..  .+-++||| ..+.+.+...+..+|.+++|+|++.+...
T Consensus        29 ~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~-~~~~~~~~~~~~~~d~vi~VvD~~~~~~~  107 (192)
T cd01889          29 FDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGH-ASLIRTIIGGAQIIDLMLLVVDATKGIQT  107 (192)
T ss_pred             hccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCc-HHHHHHHHHHHhhCCEEEEEEECCCCccH
Confidence            344455677777777766533322              11  26778999 56777777888899999999999876543


Q ss_pred             CcHHHH--HHhCCCCEEEEEEccCCCChHhH----HHHHHHHH-------hcCceEEEeccccccchhhhHHHHHHh
Q 021210          137 THPLMD--QWLGNRKRILVLNREDMISMADR----NAWATYFA-------KQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       137 ~~~~i~--~~l~~k~~IlVlNK~DLv~~~~~----~~~~~~~~-------~~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      ......  ....+.|+++|+||+|+....+.    +++.+++.       ..+.+++++||++|.|+++|++.+...
T Consensus       108 ~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~  184 (192)
T cd01889         108 QTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNL  184 (192)
T ss_pred             HHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhc
Confidence            322111  11236799999999999865432    22222221       124678999999999999988876653

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.06  E-value=2.2e-10  Score=111.77  Aligned_cols=57  Identities=28%  Similarity=0.389  Sum_probs=47.7

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEE--eC--CcEEEEeCCCcccCC
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--FG--KDLEFLDSPGIIPMR  276 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~--~~--~~~~liDTPGi~~~~  276 (316)
                      .|+|||+||||||||+|+|.+.+ .+++++|+||+......  .+  ..+.++||||+....
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k-~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a  221 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAK-PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGA  221 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCc-ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccc
Confidence            59999999999999999999877 48999999999865433  23  358999999998543

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.05  E-value=9.7e-10  Score=112.95  Aligned_cols=128  Identities=18%  Similarity=0.152  Sum_probs=92.6

Q ss_pred             cchhhhhhccccCCcceEEEecccc---ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH---HHHHhCC
Q 021210           74 IEAYEEECDWADLDADLYYWTKSLR---PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL---MDQWLGN  147 (316)
Q Consensus        74 ~g~~~e~e~~~~~d~~~~~~~~~~~---~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~---i~~~l~~  147 (316)
                      |....|.+.++|+|..+.+|...-.   .+-+.||| .++.++|...+..+|++++|+|+..+......+   +...++.
T Consensus        26 dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGh-e~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi  104 (614)
T PRK10512         26 DRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGH-EKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGN  104 (614)
T ss_pred             ccchhcccCCceEEeeeEEEecCCCcEEEEEECCCH-HHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCC
Confidence            3344566678898888777754322   37799999 789999999999999999999999876543333   3333333


Q ss_pred             CCEEEEEEccCCCChHhHH----HHHHHHHhcC---ceEEEeccccccchhhhHHHHHHhhh
Q 021210          148 RKRILVLNREDMISMADRN----AWATYFAKQG---TKVIFSNGQLGMGTMKLSRLAKALAS  202 (316)
Q Consensus       148 k~~IlVlNK~DLv~~~~~~----~~~~~~~~~g---~~vi~iSa~~g~gi~~L~~~L~~l~~  202 (316)
                      .++++|+||+|+++.+..+    ++.+.+...+   .+++++||++|.|+++|.+.|..+..
T Consensus       105 ~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~  166 (614)
T PRK10512        105 PMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQLPE  166 (614)
T ss_pred             CeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhc
Confidence            4468999999998764432    2333343333   56899999999999999999887654

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.05  E-value=8.7e-10  Score=99.15  Aligned_cols=124  Identities=19%  Similarity=0.156  Sum_probs=88.0

Q ss_pred             CCCCCCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCC-------CC
Q 021210           67 SNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLS-------TT  137 (316)
Q Consensus        67 ~~~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~-------~~  137 (316)
                      ++++-+.|-...|++.+.|+|.....|...-.+  +.++||| .++...+...+..+|++|+|+|+.++..       ..
T Consensus        46 ~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~liDtpG~-~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~  124 (219)
T cd01883          46 FKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFTILDAPGH-RDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQ  124 (219)
T ss_pred             hhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEEEEECCCh-HHHHHHHHHHhhhCCEEEEEEECCCCccccccccccc
Confidence            445567888899999999999999988765544  7789999 5677888888999999999999987421       11


Q ss_pred             cH---HHHHHhCCCCEEEEEEccCCCC----hHhHHHHH----HHHHhcC-----ceEEEeccccccchh
Q 021210          138 HP---LMDQWLGNRKRILVLNREDMIS----MADRNAWA----TYFAKQG-----TKVIFSNGQLGMGTM  191 (316)
Q Consensus       138 ~~---~i~~~l~~k~~IlVlNK~DLv~----~~~~~~~~----~~~~~~g-----~~vi~iSa~~g~gi~  191 (316)
                      ..   .+...+..+|+++++||+|+..    ....++..    +.+...+     ..++++||++|.|++
T Consensus       125 ~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         125 TREHALLARTLGVKQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             hHHHHHHHHHcCCCeEEEEEEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            11   1122233478899999999983    22222222    2344433     458999999999976

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.05  E-value=1.2e-09  Score=99.00  Aligned_cols=102  Identities=14%  Similarity=-0.012  Sum_probs=77.6

Q ss_pred             ccccccchHHHHHHHHHHHHh--hcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChHhHHHHHH----
Q 021210           99 PVQWYPGHIAKTEKELKDQLK--LMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWAT----  170 (316)
Q Consensus        99 ~i~~~Pgh~~~~~r~l~~~i~--~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~~~~~~~----  170 (316)
                      .+.++||| .++.+.+...+.  .+|++++|+|++.+....+..+..++.  +.|+++|+||+|+++..+..+..+    
T Consensus        87 ~liDtpG~-~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~~~~~~~~~~~l~~  165 (224)
T cd04165          87 TFIDLAGH-ERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPANILQETLKDLKR  165 (224)
T ss_pred             EEEECCCc-HHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccCHHHHHHHHHHHHH
Confidence            37789999 778888887775  799999999999887766666655543  689999999999987655433333    


Q ss_pred             HHHhc--------------------------CceEEEeccccccchhhhHHHHHHhh
Q 021210          171 YFAKQ--------------------------GTKVIFSNGQLGMGTMKLSRLAKALA  201 (316)
Q Consensus       171 ~~~~~--------------------------g~~vi~iSa~~g~gi~~L~~~L~~l~  201 (316)
                      .+...                          ..+++.+|+.+|+|++.|.++|..|.
T Consensus       166 ~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~lp  222 (224)
T cd04165         166 ILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNLLP  222 (224)
T ss_pred             HhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHhcC
Confidence            22211                          13678899999999999999987764

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>cd04171 SelB SelB subfamily

Probab=99.05  E-value=2e-09  Score=90.47  Aligned_cols=99  Identities=18%  Similarity=0.204  Sum_probs=70.0

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH---HHHHhCCCCEEEEEEccCCCChHh----HHHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL---MDQWLGNRKRILVLNREDMISMAD----RNAWATYF  172 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~---i~~~l~~k~~IlVlNK~DLv~~~~----~~~~~~~~  172 (316)
                      +-++||+ .++.+.+...+..+|++++|+|++++.......   +......+|+++|+||+|+.+...    .+++.+.+
T Consensus        55 ~~DtpG~-~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~  133 (164)
T cd04171          55 FIDVPGH-EKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELL  133 (164)
T ss_pred             EEECCCh-HHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHH
Confidence            5578998 567777778889999999999998744322222   222233459999999999986532    23344444


Q ss_pred             Hh---cCceEEEeccccccchhhhHHHHHH
Q 021210          173 AK---QGTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       173 ~~---~g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      ..   .+.+++++||++|.|++++.+.+..
T Consensus       134 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  163 (164)
T cd04171         134 AGTFLADAPIFPVSAVTGEGIEELKEYLDE  163 (164)
T ss_pred             HhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence            44   2467999999999999998877654

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.04  E-value=3.8e-10  Score=111.80  Aligned_cols=61  Identities=38%  Similarity=0.478  Sum_probs=51.3

Q ss_pred             ccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEE--e-CCcEEEEeCCCcccC
Q 021210          215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-GKDLEFLDSPGIIPM  275 (316)
Q Consensus       215 ~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~--~-~~~~~liDTPGi~~~  275 (316)
                      ..+++|+++|.||||||||+|+|++.....+++.||||++.....  + +..+.++||||+...
T Consensus       201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~  264 (442)
T TIGR00450       201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREH  264 (442)
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccc
Confidence            456899999999999999999999988788999999999965332  2 446889999999753

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.03  E-value=1.7e-09  Score=107.49  Aligned_cols=99  Identities=14%  Similarity=0.138  Sum_probs=76.9

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCC-C---CCCcHHHHHHhCCCCEEEEEEccCCCChHhHHHHH----HH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIP-L---STTHPLMDQWLGNRKRILVLNREDMISMADRNAWA----TY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~-~---~~~~~~i~~~l~~k~~IlVlNK~DLv~~~~~~~~~----~~  171 (316)
                      +.+.||| .++.++|...+..+|++++|+|+..+ .   +.++..+...++.+++|+|+||+|+++.+...+..    ++
T Consensus       121 ~IDtPGH-~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~~~~~~~~~ei~~~  199 (460)
T PTZ00327        121 FVDCPGH-DILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVKEAQAQDQYEEIRNF  199 (460)
T ss_pred             eeeCCCH-HHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccCHHHHHHHHHHHHHH
Confidence            7789999 78999999999999999999999875 2   33444555556677899999999999765433322    22


Q ss_pred             HHh---cCceEEEeccccccchhhhHHHHHH
Q 021210          172 FAK---QGTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       172 ~~~---~g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      +..   ...+++++||++|.|++.|++.|.+
T Consensus       200 l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~  230 (460)
T PTZ00327        200 VKGTIADNAPIIPISAQLKYNIDVVLEYICT  230 (460)
T ss_pred             HHhhccCCCeEEEeeCCCCCCHHHHHHHHHh
Confidence            222   2467999999999999999998885

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.02  E-value=1.5e-09  Score=111.06  Aligned_cols=128  Identities=20%  Similarity=0.192  Sum_probs=91.0

Q ss_pred             hhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC---cHHHHHHhCCCCEE
Q 021210           77 YEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT---HPLMDQWLGNRKRI  151 (316)
Q Consensus        77 ~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~---~~~i~~~l~~k~~I  151 (316)
                      ..|.+.++|+|..+.+|...-..  +-+.||| .++.+++...+..+|++++|+|+.++....   +..+...++.++++
T Consensus        29 ~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGh-e~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iI  107 (581)
T TIGR00475        29 PEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGH-EKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTI  107 (581)
T ss_pred             hhHhcCCceEEeEEEEEEeCCEEEEEEECCCH-HHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEE
Confidence            34566788888877666554333  6789999 789999999999999999999999865332   22233333333499


Q ss_pred             EEEEccCCCChHhHH----HHHHHHHhc----CceEEEeccccccchhhhHHHHHHhhhhhh
Q 021210          152 LVLNREDMISMADRN----AWATYFAKQ----GTKVIFSNGQLGMGTMKLSRLAKALASDVN  205 (316)
Q Consensus       152 lVlNK~DLv~~~~~~----~~~~~~~~~----g~~vi~iSa~~g~gi~~L~~~L~~l~~~~~  205 (316)
                      +|+||+|+++.+..+    +..+.+...    +.+++++|+++|.|++++.+.+..+.....
T Consensus       108 VVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~~  169 (581)
T TIGR00475       108 VVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLESLD  169 (581)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHhCC
Confidence            999999998765322    222223332    367899999999999999988877765443

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>PRK11058 GTPase HflX; Provisional

Probab=99.02  E-value=6.4e-10  Score=109.67  Aligned_cols=56  Identities=30%  Similarity=0.406  Sum_probs=45.8

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEe-C-CcEEEEeCCCccc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-G-KDLEFLDSPGIIP  274 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~-~-~~~~liDTPGi~~  274 (316)
                      .+|+++|+||||||||+|+|++.+.. +++.||+|++...  +.+ + ..+.++||||+..
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r  257 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDVADVGETVLADTVGFIR  257 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEeCCCCeEEEEecCcccc
Confidence            47999999999999999999988754 8889999998643  333 2 3678999999954

>PTZ00258 GTP-binding protein; Provisional

Probab=99.02  E-value=3.2e-10  Score=110.15  Aligned_cols=58  Identities=36%  Similarity=0.497  Sum_probs=47.5

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe--------------------CCcEEEEeCCCcccC
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF--------------------GKDLEFLDSPGIIPM  275 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~--------------------~~~~~liDTPGi~~~  275 (316)
                      .++|++||+||||||||+|+|.+.+ ..++++||||++.....+                    +..+.++||||+...
T Consensus        21 ~~kvgIVG~PNvGKSTLfnaLt~~~-~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g   98 (390)
T PTZ00258         21 NLKMGIVGLPNVGKSTTFNALCKQQ-VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG   98 (390)
T ss_pred             CcEEEEECCCCCChHHHHHHHhcCc-ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence            5689999999999999999998776 699999999988543221                    124899999999854

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.02  E-value=3.1e-10  Score=109.19  Aligned_cols=57  Identities=40%  Similarity=0.541  Sum_probs=47.5

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEeC------------------CcEEEEeCCCcccC
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG------------------KDLEFLDSPGIIPM  275 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~~------------------~~~~liDTPGi~~~  275 (316)
                      ++|++||+||||||||+|+|++.+ ..++++||||++...  +.+.                  ..+.++||||+...
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~   79 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKG   79 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCC
Confidence            579999999999999999999988 799999999988542  2222                  24899999999864

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.00  E-value=7.5e-10  Score=104.21  Aligned_cols=60  Identities=25%  Similarity=0.364  Sum_probs=47.9

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE---EEeCCcEEEEeCCCcccC
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW---VRFGKDLEFLDSPGIIPM  275 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~---~~~~~~~~liDTPGi~~~  275 (316)
                      ..++|+++|.+||||||++|+|+++..+.++...++|.....   ...+..+.+|||||+.+.
T Consensus        37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~   99 (313)
T TIGR00991        37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEG   99 (313)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCch
Confidence            357899999999999999999999988788887766544322   123567999999999865

>cd01900 YchF YchF subfamily

Probab=99.00  E-value=4.4e-10  Score=104.63  Aligned_cols=55  Identities=42%  Similarity=0.538  Sum_probs=45.2

Q ss_pred             EeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEe-CC-----------------cEEEEeCCCcccC
Q 021210          220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GK-----------------DLEFLDSPGIIPM  275 (316)
Q Consensus       220 i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~-~~-----------------~~~liDTPGi~~~  275 (316)
                      |++||+||||||||+|+|++.+. .++++||||++...  +.+ +.                 .+.++||||+...
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~   75 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKG   75 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCC
Confidence            58999999999999999999886 89999999988543  222 11                 3899999999854

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.00  E-value=5.8e-10  Score=97.28  Aligned_cols=58  Identities=33%  Similarity=0.551  Sum_probs=50.9

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCc-ccccCCCCCceeeEEEEEeCCcEEEEeCCCccc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIP  274 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~-~~~vs~~pgtT~~~~~~~~~~~~~liDTPGi~~  274 (316)
                      ..+|+++|.+|||||||+|+|.+.. ...+++.+|+|++...+..+.++.|+||||+..
T Consensus        24 ~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~   82 (196)
T PRK00454         24 GPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGY   82 (196)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCC
Confidence            4689999999999999999999875 667888999999988777777899999999754

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.00  E-value=1.2e-09  Score=94.66  Aligned_cols=59  Identities=31%  Similarity=0.524  Sum_probs=50.8

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCc-ccccCCCCCceeeEEEEEeCCcEEEEeCCCcccC
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPM  275 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~-~~~vs~~pgtT~~~~~~~~~~~~~liDTPGi~~~  275 (316)
                      ..+|+++|.+|+|||||+|+|.+.. ...+++.+|+|++...+..+.++.++||||+...
T Consensus        18 ~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~   77 (179)
T TIGR03598        18 GPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVNDGFRLVDLPGYGYA   77 (179)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCCcEEEEeCCCCccc
Confidence            4689999999999999999999875 5678889999999887776678999999998543

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=98.99  E-value=9.4e-10  Score=102.87  Aligned_cols=61  Identities=33%  Similarity=0.475  Sum_probs=52.0

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE---EEEEeCCcEEEEeCCCcccCCC
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL---KWVRFGKDLEFLDSPGIIPMRI  277 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~---~~~~~~~~~~liDTPGi~~~~~  277 (316)
                      ...++++||+||||||||+|+|++.+ ..++.+|+||...   .+.+.+..++|+|+|||+...-
T Consensus        62 Gda~v~lVGfPsvGKStLL~~LTnt~-seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas  125 (365)
T COG1163          62 GDATVALVGFPSVGKSTLLNKLTNTK-SEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGAS  125 (365)
T ss_pred             CCeEEEEEcCCCccHHHHHHHHhCCC-ccccccCceecccccceEeecCceEEEEcCcccccCcc
Confidence            35689999999999999999999887 6899999999985   3445578899999999986533

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=98.98  E-value=4.1e-09  Score=93.66  Aligned_cols=100  Identities=16%  Similarity=0.162  Sum_probs=70.4

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC-CCC-cHHHHHH--hCCCCEEEEEEccCCCChHhHHH----HHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL-STT-HPLMDQW--LGNRKRILVLNREDMISMADRNA----WATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~-~~~-~~~i~~~--l~~k~~IlVlNK~DLv~~~~~~~----~~~~  171 (316)
                      +-++||| .++.+.+...+..+|++++|+|+..+. ... ...+..+  ...+|+++|+||+|+.+..+...    ..+.
T Consensus        87 ~iDtPG~-~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~  165 (203)
T cd01888          87 FVDCPGH-EILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKEEQALENYEQIKKF  165 (203)
T ss_pred             EEECCCh-HHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCHHHHHHHHHHHHHH
Confidence            4578998 678888889999999999999998752 222 1222222  23457899999999987543322    2222


Q ss_pred             HHh---cCceEEEeccccccchhhhHHHHHHh
Q 021210          172 FAK---QGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       172 ~~~---~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      +..   .+..++++||++|+|+++|.+.+.+.
T Consensus       166 ~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~  197 (203)
T cd01888         166 VKGTIAENAPIIPISAQLKYNIDVLLEYIVKK  197 (203)
T ss_pred             HhccccCCCcEEEEeCCCCCCHHHHHHHHHHh
Confidence            322   24678999999999999998887653

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK12736 elongation factor Tu; Reviewed

Probab=98.98  E-value=4.8e-09  Score=102.56  Aligned_cols=128  Identities=16%  Similarity=0.065  Sum_probs=92.3

Q ss_pred             CCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--C
Q 021210           72 GSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--N  147 (316)
Q Consensus        72 ~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~  147 (316)
                      +.|-...|++.+.|+|.....|.+..+.  +-+.||| .++.+++...+..+|++++|+|+..+......+...++.  +
T Consensus        49 ~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh-~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g  127 (394)
T PRK12736         49 SIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGH-ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVG  127 (394)
T ss_pred             hhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCH-HHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcC
Confidence            5677788999999999998888765443  7799999 688899999999999999999999876554444433332  4


Q ss_pred             CC-EEEEEEccCCCChHhHH-----HHHHHHHhcC-----ceEEEecccccc--------chhhhHHHHHHh
Q 021210          148 RK-RILVLNREDMISMADRN-----AWATYFAKQG-----TKVIFSNGQLGM--------GTMKLSRLAKAL  200 (316)
Q Consensus       148 k~-~IlVlNK~DLv~~~~~~-----~~~~~~~~~g-----~~vi~iSa~~g~--------gi~~L~~~L~~l  200 (316)
                      .| +|+++||+|+++.++..     +..+++...+     .+++++||++|.        ++..|.+.+...
T Consensus       128 ~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~  199 (394)
T PRK12736        128 VPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEY  199 (394)
T ss_pred             CCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHh
Confidence            56 67899999998544322     2333333334     468999999983        456666665554

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=98.97  E-value=4e-09  Score=103.50  Aligned_cols=100  Identities=17%  Similarity=0.180  Sum_probs=73.9

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC-CC---CcHHHHHHhCCCCEEEEEEccCCCChHhHH----HHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL-ST---THPLMDQWLGNRKRILVLNREDMISMADRN----AWATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~-~~---~~~~i~~~l~~k~~IlVlNK~DLv~~~~~~----~~~~~  171 (316)
                      +-++||| .++.+++...+..+|++++|+|++.+. ..   ++..+...++.+++++|+||+|+.+.+...    +..+.
T Consensus        84 liDtPGh-~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~~~~~~~~~i~~~  162 (406)
T TIGR03680        84 FVDAPGH-ETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKEKALENYEEIKEF  162 (406)
T ss_pred             EEECCCH-HHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHHHHHHHHHHHHhh
Confidence            6789999 788999999999999999999999765 22   222333334467899999999998754322    22222


Q ss_pred             HHhc---CceEEEeccccccchhhhHHHHHHh
Q 021210          172 FAKQ---GTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       172 ~~~~---g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      +...   +..++++||++|+|+++|.+.|...
T Consensus       163 l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~  194 (406)
T TIGR03680       163 VKGTVAENAPIIPVSALHNANIDALLEAIEKF  194 (406)
T ss_pred             hhhcccCCCeEEEEECCCCCChHHHHHHHHHh
Confidence            2221   3578999999999999999988764

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PRK15494 era GTPase Era; Provisional

Probab=98.96  E-value=1.3e-09  Score=104.65  Aligned_cols=59  Identities=31%  Similarity=0.577  Sum_probs=49.2

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEe-CCcEEEEeCCCcccC
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIPM  275 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~-~~~~~liDTPGi~~~  275 (316)
                      ..+|+++|.||||||||+|+|++.+...+++.++||++...  +.. +.++.++||||+...
T Consensus        52 ~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~  113 (339)
T PRK15494         52 TVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEP  113 (339)
T ss_pred             eeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCC
Confidence            46899999999999999999999988888999999998542  222 457899999999643

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=98.96  E-value=6.9e-09  Score=88.62  Aligned_cols=103  Identities=19%  Similarity=0.153  Sum_probs=76.1

Q ss_pred             cccccch---HHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCEEEEEEccCCCChHhHHHHHHHHHhcC
Q 021210          100 VQWYPGH---IAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQG  176 (316)
Q Consensus       100 i~~~Pgh---~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g  176 (316)
                      +-++||.   ..+..+.+...+..+|++++|+|+..+.+.....+.....++|+++++||+|+.+. +.+.+.+++.+.+
T Consensus        41 ~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~~~~ii~v~nK~Dl~~~-~~~~~~~~~~~~~  119 (158)
T PRK15467         41 DIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDIGVSKRQIAVISKTDMPDA-DVAATRKLLLETG  119 (158)
T ss_pred             cccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhccCCCCeEEEEEccccCcc-cHHHHHHHHHHcC
Confidence            4567774   23466667777899999999999987765555555544446789999999998643 3344455555666


Q ss_pred             --ceEEEeccccccchhhhHHHHHHhhhh
Q 021210          177 --TKVIFSNGQLGMGTMKLSRLAKALASD  203 (316)
Q Consensus       177 --~~vi~iSa~~g~gi~~L~~~L~~l~~~  203 (316)
                        .+++++||++|.|+++|.+.+.++...
T Consensus       120 ~~~p~~~~Sa~~g~gi~~l~~~l~~~~~~  148 (158)
T PRK15467        120 FEEPIFELNSHDPQSVQQLVDYLASLTKQ  148 (158)
T ss_pred             CCCCEEEEECCCccCHHHHHHHHHHhchh
Confidence              378999999999999999888776543

>CHL00071 tufA elongation factor Tu

Probab=98.96  E-value=5.9e-09  Score=102.41  Aligned_cols=117  Identities=17%  Similarity=0.079  Sum_probs=87.1

Q ss_pred             CCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--C
Q 021210           72 GSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--N  147 (316)
Q Consensus        72 ~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~  147 (316)
                      ..|-...|++.+.|+|.....|....+.  +-++||| .++.+++...+..+|++++|+|++.+......++..++.  +
T Consensus        49 ~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh-~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g  127 (409)
T CHL00071         49 EIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGH-ADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVG  127 (409)
T ss_pred             cccCChhhhcCCEeEEccEEEEccCCeEEEEEECCCh-HHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcC
Confidence            4566678999999999998888765443  7799998 689999999999999999999999877554444444432  5


Q ss_pred             CC-EEEEEEccCCCChHhH-----HHHHHHHHhcC-----ceEEEeccccccc
Q 021210          148 RK-RILVLNREDMISMADR-----NAWATYFAKQG-----TKVIFSNGQLGMG  189 (316)
Q Consensus       148 k~-~IlVlNK~DLv~~~~~-----~~~~~~~~~~g-----~~vi~iSa~~g~g  189 (316)
                      .| +|+++||+|+++..+.     ++..+++...+     ..++++||.+|.+
T Consensus       128 ~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n  180 (409)
T CHL00071        128 VPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPGDDIPIVSGSALLALE  180 (409)
T ss_pred             CCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhccc
Confidence            56 6789999999875442     12333444433     4689999998863

>PRK00089 era GTPase Era; Reviewed

Probab=98.95  E-value=1.2e-09  Score=102.31  Aligned_cols=58  Identities=36%  Similarity=0.601  Sum_probs=48.4

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE-EEe-C-CcEEEEeCCCcccCC
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW-VRF-G-KDLEFLDSPGIIPMR  276 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~-~~~-~-~~~~liDTPGi~~~~  276 (316)
                      .|+++|.||||||||+|+|++.+.+.+++.|+||++... +.. + .++.++||||+....
T Consensus         7 ~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~   67 (292)
T PRK00089          7 FVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK   67 (292)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCch
Confidence            589999999999999999999998899999999998532 222 2 478999999997543

>TIGR00485 EF-Tu translation elongation factor TU

Probab=98.95  E-value=1.2e-08  Score=99.82  Aligned_cols=116  Identities=17%  Similarity=0.063  Sum_probs=84.2

Q ss_pred             CCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CC
Q 021210           72 GSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GN  147 (316)
Q Consensus        72 ~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~  147 (316)
                      +.|-...|++.++|+|.....|.+..+.  +-++||| .++.+++...+..+|.+++|+|++.+......+...++  .+
T Consensus        49 ~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh-~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~g  127 (394)
T TIGR00485        49 QIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGH-ADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVG  127 (394)
T ss_pred             cccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCch-HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcC
Confidence            5677788999999999998888765443  7799999 67889999999999999999999987544333333332  24


Q ss_pred             CCE-EEEEEccCCCChHhHH-----HHHHHHHhcC-----ceEEEecccccc
Q 021210          148 RKR-ILVLNREDMISMADRN-----AWATYFAKQG-----TKVIFSNGQLGM  188 (316)
Q Consensus       148 k~~-IlVlNK~DLv~~~~~~-----~~~~~~~~~g-----~~vi~iSa~~g~  188 (316)
                      .|. |+++||+|+++.++..     +..+++...+     ++++++|+.+|.
T Consensus       128 i~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       128 VPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPGDDTPIIRGSALKAL  179 (394)
T ss_pred             CCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCccCccEEECcccccc
Confidence            554 5789999998754321     2333344433     578999999874

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd01890 LepA LepA subfamily

Probab=98.95  E-value=9.3e-09  Score=88.26  Aligned_cols=122  Identities=17%  Similarity=0.095  Sum_probs=77.6

Q ss_pred             hhhhhccccCCcceE--EEe---cccc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHH-Hh-CC
Q 021210           77 YEEECDWADLDADLY--YWT---KSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQ-WL-GN  147 (316)
Q Consensus        77 ~~e~e~~~~~d~~~~--~~~---~~~~--~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~-~l-~~  147 (316)
                      ..|++.+.+.+....  .|.   ....  .+-++||| .++...+...+..+|++|+|+|+.++....+..... +. .+
T Consensus        41 ~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~  119 (179)
T cd01890          41 DLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGH-VDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENN  119 (179)
T ss_pred             hhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCC-hhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcC
Confidence            445566666554432  221   1111  15678999 667778888899999999999998765543332222 22 36


Q ss_pred             CCEEEEEEccCCCChHhHHHHHHHHHhcCc---eEEEeccccccchhhhHHHHHH
Q 021210          148 RKRILVLNREDMISMADRNAWATYFAKQGT---KVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       148 k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~---~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      +|+++|+||+|+.+....+...+.....+.   +++.+||++|.|+++|.+.+..
T Consensus       120 ~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~  174 (179)
T cd01890         120 LEIIPVINKIDLPSADPERVKQQIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVE  174 (179)
T ss_pred             CCEEEEEECCCCCcCCHHHHHHHHHHHhCCCcccEEEeeccCCCCHHHHHHHHHh
Confidence            799999999998643211111111122333   4889999999999998877654

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=98.94  E-value=1.5e-08  Score=87.17  Aligned_cols=129  Identities=16%  Similarity=0.054  Sum_probs=86.3

Q ss_pred             CCCcchhhhhhccccCCcceEEEecccc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--
Q 021210           71 NGSIEAYEEECDWADLDADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--  146 (316)
Q Consensus        71 ~~~~g~~~e~e~~~~~d~~~~~~~~~~~--~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--  146 (316)
                      .+.+....+++...+++.......-...  .+-++||+ .++.+.....+..+|.+++|+|+..+.......+...+.  
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~-~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~  113 (189)
T cd00881          35 TFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGH-EDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREG  113 (189)
T ss_pred             ccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCc-HHHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHC
Confidence            3445555666666666655443332222  25678998 456667778889999999999998876554444443433  


Q ss_pred             CCCEEEEEEccCCCChHhHHH----HHHHHHh--------------cCceEEEeccccccchhhhHHHHHHh
Q 021210          147 NRKRILVLNREDMISMADRNA----WATYFAK--------------QGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       147 ~k~~IlVlNK~DLv~~~~~~~----~~~~~~~--------------~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      ++|+++|+||+|+....+...    ..+.+..              ...+++++|+++|.|++++.+.+...
T Consensus       114 ~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~  185 (189)
T cd00881         114 GLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEH  185 (189)
T ss_pred             CCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhh
Confidence            789999999999987433222    2222222              23678999999999999988776554

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>KOG1249 consensus Predicted GTPases [General function prediction only]

Probab=98.94  E-value=9e-10  Score=108.49  Aligned_cols=122  Identities=24%  Similarity=0.318  Sum_probs=77.8

Q ss_pred             ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCEEEEEEccCCCChHhHHHHHHHHHhc-----
Q 021210          101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQ-----  175 (316)
Q Consensus       101 ~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~-----  175 (316)
                      ...|+.   +.+...+..++--++..|+|..+......+.+...+..+..++..||+|+.+.+....+.+.+...     
T Consensus        94 ~v~~~~---y~k~~~~~~~~~~~~~~vvd~~d~p~~i~p~~~~~v~~~~~~v~~n~vdl~p~d~~~~~c~rc~~l~~~~~  170 (572)
T KOG1249|consen   94 PVVPGE---YKKEKSEKQENPALARKVVDLSDEPCSIDPLLTNDVGSPRLFVDGNKVDLLPKDSRPGYCQRCHSLLHYGM  170 (572)
T ss_pred             ccChhh---hhhhhhhhhhcccceEEeeecccCccccccchhhcccCCceEeeccccccccccccchHHHHHHhhcccce
Confidence            444544   666666666776678888898887778888888888877789999999999876533333333221     


Q ss_pred             ---C-----------ceEEEeccccccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhh
Q 021210          176 ---G-----------TKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLL  238 (316)
Q Consensus       176 ---g-----------~~vi~iSa~~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~  238 (316)
                         +           ..+..++++.|.|+++|.-.+...-.       -+|      .+..+|++||||||++|.|+
T Consensus       171 vk~~~~en~~p~~~f~~~~~~r~ktgyg~eeLI~~lvd~~d-------f~G------df~lvg~tnvgks~~fn~ll  234 (572)
T KOG1249|consen  171 IKAGGGENLNPDFDFDHVDLIRAKTGYGIEELIVMLVDIVD-------FRG------DFYLVGATNVGKSTLFNALL  234 (572)
T ss_pred             eecccccCCCcccchhhhhhhhhhhcccHHHHHHHhhheee-------ccC------ceeeeeecccchhhHHHHHh
Confidence               0           12345778888888887655433211       111      14555666666666666654

>PLN03127 Elongation factor Tu; Provisional

Probab=98.94  E-value=8.1e-09  Score=102.51  Aligned_cols=128  Identities=16%  Similarity=0.057  Sum_probs=90.2

Q ss_pred             CCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--C
Q 021210           72 GSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--N  147 (316)
Q Consensus        72 ~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~  147 (316)
                      .+|-...|++.++|+|..+..|.+..+.  +-++||| .++.+++...+..+|++++|+|++.+......++..++.  +
T Consensus        98 ~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh-~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~g  176 (447)
T PLN03127         98 EIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGH-ADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVG  176 (447)
T ss_pred             cccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCc-cchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcC
Confidence            4677778999999999999999876554  7799999 678999999999999999999999877555444444432  5


Q ss_pred             CC-EEEEEEccCCCChHhHHH-----HHHHHHhcC-----ceEEEeccc---cccc-------hhhhHHHHHHh
Q 021210          148 RK-RILVLNREDMISMADRNA-----WATYFAKQG-----TKVIFSNGQ---LGMG-------TMKLSRLAKAL  200 (316)
Q Consensus       148 k~-~IlVlNK~DLv~~~~~~~-----~~~~~~~~g-----~~vi~iSa~---~g~g-------i~~L~~~L~~l  200 (316)
                      .| +|+++||+|+++..+..+     +.+.+...+     ..++++|+.   +|.|       +..|.+.+.++
T Consensus       177 ip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~  250 (447)
T PLN03127        177 VPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEY  250 (447)
T ss_pred             CCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHh
Confidence            66 578999999986543222     222222222     457777765   4444       45566655554

>PRK04213 GTP-binding protein; Provisional

Probab=98.92  E-value=1.4e-09  Score=95.74  Aligned_cols=55  Identities=36%  Similarity=0.550  Sum_probs=47.1

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEeCCcEEEEeCCCcc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGII  273 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~~~~~~liDTPGi~  273 (316)
                      ..+|+++|.+|||||||+|+|.+.. ..++..||+|++...+..+ ++.++||||+.
T Consensus         9 ~~~i~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~~   63 (201)
T PRK04213          9 KPEIVFVGRSNVGKSTLVRELTGKK-VRVGKRPGVTRKPNHYDWG-DFILTDLPGFG   63 (201)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCceeeCceEEeec-ceEEEeCCccc
Confidence            4689999999999999999999876 5688899999987666555 68999999973

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=98.92  E-value=2e-09  Score=109.24  Aligned_cols=64  Identities=31%  Similarity=0.506  Sum_probs=52.6

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe---CCcEEEEeCCCcccCCCCCHHH
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMRISDQAA  282 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~~~~~~~~~~  282 (316)
                      .+|+++|.||||||||+|+|+|.+ .+|++.||+|-+...-.+   ++.+.++|.||+.+......+|
T Consensus         4 ~~valvGNPNvGKTtlFN~LTG~~-q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE   70 (653)
T COG0370           4 LTVALVGNPNVGKTTLFNALTGAN-QKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDE   70 (653)
T ss_pred             ceEEEecCCCccHHHHHHHHhccC-ceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchH
Confidence            459999999999999999999887 699999999988654333   5679999999998765544444

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=98.91  E-value=1.1e-08  Score=86.08  Aligned_cols=98  Identities=20%  Similarity=0.212  Sum_probs=80.2

Q ss_pred             cccccch---HHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCEEEEEEccCCC-ChHhHHHHHHHHHhc
Q 021210          100 VQWYPGH---IAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMI-SMADRNAWATYFAKQ  175 (316)
Q Consensus       100 i~~~Pgh---~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~IlVlNK~DLv-~~~~~~~~~~~~~~~  175 (316)
                      +.++||.   +..+.+.+.....+||+|++|.|+..+...+.+.+...+ .+|+|-|+||+|+. +.++.+.-.++++..
T Consensus        40 ~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~fa~~f-~~pvIGVITK~Dl~~~~~~i~~a~~~L~~a  118 (143)
T PF10662_consen   40 TIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFPPGFASMF-NKPVIGVITKIDLPSDDANIERAKKWLKNA  118 (143)
T ss_pred             EEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCCchhhccc-CCCEEEEEECccCccchhhHHHHHHHHHHc
Confidence            3677876   345677778888999999999999999888888888776 68999999999998 444555555667777


Q ss_pred             Cc-eEEEeccccccchhhhHHHHH
Q 021210          176 GT-KVIFSNGQLGMGTMKLSRLAK  198 (316)
Q Consensus       176 g~-~vi~iSa~~g~gi~~L~~~L~  198 (316)
                      |. +++.+|+.+|+|+++|+++|+
T Consensus       119 G~~~if~vS~~~~eGi~eL~~~L~  142 (143)
T PF10662_consen  119 GVKEIFEVSAVTGEGIEELKDYLE  142 (143)
T ss_pred             CCCCeEEEECCCCcCHHHHHHHHh
Confidence            73 578899999999999998875

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>COG1159 Era GTPase [General function prediction only]

Probab=98.88  E-value=2.2e-08  Score=92.92  Aligned_cols=96  Identities=18%  Similarity=0.160  Sum_probs=77.5

Q ss_pred             HHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCC--CCEEEEEEccCCCChHh-HHHHHHHHHhcC--ceEEEecc
Q 021210          110 TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGN--RKRILVLNREDMISMAD-RNAWATYFAKQG--TKVIFSNG  184 (316)
Q Consensus       110 ~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~--k~~IlVlNK~DLv~~~~-~~~~~~~~~~~g--~~vi~iSa  184 (316)
                      ..+..+..+..+|+|++|+|+..+++..+..+.+.+..  .|+++++||+|+++... +....+++....  .+++++||
T Consensus        75 m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA  154 (298)
T COG1159          75 MNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISA  154 (298)
T ss_pred             HHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeec
Confidence            44555677899999999999999999988888887764  69999999999998766 455555555443  47899999


Q ss_pred             ccccchhhhHHHHHHhhhhhh
Q 021210          185 QLGMGTMKLSRLAKALASDVN  205 (316)
Q Consensus       185 ~~g~gi~~L~~~L~~l~~~~~  205 (316)
                      ++|.|++.|.+.+....++..
T Consensus       155 ~~g~n~~~L~~~i~~~Lpeg~  175 (298)
T COG1159         155 LKGDNVDTLLEIIKEYLPEGP  175 (298)
T ss_pred             cccCCHHHHHHHHHHhCCCCC
Confidence            999999999999888765544

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=98.88  E-value=2e-09  Score=103.03  Aligned_cols=57  Identities=35%  Similarity=0.443  Sum_probs=47.2

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEe--CCcEEEEeCCCcccC
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF--GKDLEFLDSPGIIPM  275 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~--~~~~~liDTPGi~~~  275 (316)
                      ..|++||+||||||||+|+|.+.+ ..++++|+||++...  +..  +..+.++||||+...
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~-~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~g  219 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEG  219 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCC-CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCC
Confidence            359999999999999999999866 578999999999654  333  246899999999753

>TIGR00436 era GTP-binding protein Era

Probab=98.88  E-value=3.8e-08  Score=91.29  Aligned_cols=92  Identities=15%  Similarity=0.089  Sum_probs=66.6

Q ss_pred             HHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChHhHHHHHHHHHh-cC-ceEEEecccc
Q 021210          111 EKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAK-QG-TKVIFSNGQL  186 (316)
Q Consensus       111 ~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~~~~~~~~~~~-~g-~~vi~iSa~~  186 (316)
                      .+.+...+..+|++++|+|++.+.... ..+...+.  ++|+++|+||+|+.+..+..+..+.+.+ .+ .+++++||++
T Consensus        70 ~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~  148 (270)
T TIGR00436        70 MKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALT  148 (270)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCC
Confidence            344567789999999999998765443 34444443  6899999999999866554433333332 22 3689999999


Q ss_pred             ccchhhhHHHHHHhhhh
Q 021210          187 GMGTMKLSRLAKALASD  203 (316)
Q Consensus       187 g~gi~~L~~~L~~l~~~  203 (316)
                      |.|+++|.+.+.+..+.
T Consensus       149 g~gi~~L~~~l~~~l~~  165 (270)
T TIGR00436       149 GDNTSFLAAFIEVHLPE  165 (270)
T ss_pred             CCCHHHHHHHHHHhCCC
Confidence            99999999988776554

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=98.87  E-value=2.3e-08  Score=82.71  Aligned_cols=97  Identities=15%  Similarity=0.069  Sum_probs=67.4

Q ss_pred             cccccchH---HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCEEEEEEccCCCChHh-HHHHHHHHHhc
Q 021210          100 VQWYPGHI---AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMAD-RNAWATYFAKQ  175 (316)
Q Consensus       100 i~~~Pgh~---~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~IlVlNK~DLv~~~~-~~~~~~~~~~~  175 (316)
                      +-++||..   ....+.+...++++|++++|+|+.++.+..+..+...+ .+|.++|+||+|+.+... .+...++++..
T Consensus        39 ~iDt~G~~~~~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~-~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~  117 (142)
T TIGR02528        39 AIDTPGEYVENRRLYSALIVTAADADVIALVQSATDPESRFPPGFASIF-VKPVIGLVTKIDLAEADVDIERAKELLETA  117 (142)
T ss_pred             eecCchhhhhhHHHHHHHHHHhhcCCEEEEEecCCCCCcCCChhHHHhc-cCCeEEEEEeeccCCcccCHHHHHHHHHHc
Confidence            44677762   12344454568999999999999988876665554443 469999999999975322 22223334444


Q ss_pred             Cc-eEEEeccccccchhhhHHHH
Q 021210          176 GT-KVIFSNGQLGMGTMKLSRLA  197 (316)
Q Consensus       176 g~-~vi~iSa~~g~gi~~L~~~L  197 (316)
                      +. +++.+||++|.|++++.+.+
T Consensus       118 ~~~~~~~~Sa~~~~gi~~l~~~l  140 (142)
T TIGR02528       118 GAEPIFEISSVDEQGLEALVDYL  140 (142)
T ss_pred             CCCcEEEEecCCCCCHHHHHHHH
Confidence            54 68899999999999887764

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=98.87  E-value=2e-09  Score=107.52  Aligned_cols=58  Identities=34%  Similarity=0.483  Sum_probs=47.6

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEE--Ee-CCcEEEEeCCCcccC
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-GKDLEFLDSPGIIPM  275 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~--~~-~~~~~liDTPGi~~~  275 (316)
                      -.+|++||+||||||||||+|.+.+ .+++++|+||++....  .. +..+.|+||||++..
T Consensus       159 ~adV~LVG~PNAGKSTLln~Ls~ak-pkIadypfTTl~P~lGvv~~~~~~f~laDtPGlieg  219 (500)
T PRK12296        159 VADVGLVGFPSAGKSSLISALSAAK-PKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPG  219 (500)
T ss_pred             cceEEEEEcCCCCHHHHHHHHhcCC-ccccccCcccccceEEEEEECCeEEEEEECCCCccc
Confidence            3579999999999999999999876 4789999999986543  22 346899999999753

>cd01898 Obg Obg subfamily

Probab=98.87  E-value=2e-09  Score=91.41  Aligned_cols=55  Identities=35%  Similarity=0.516  Sum_probs=43.5

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEe-CC-cEEEEeCCCccc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GK-DLEFLDSPGIIP  274 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~-~~-~~~liDTPGi~~  274 (316)
                      +|+++|.+|||||||+|+|.+... .++..|++|++...  +.. +. .+.++||||+..
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~   60 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKP-KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIE   60 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCc-cccCCCccccCCcceEEEcCCCCeEEEEecCcccC
Confidence            489999999999999999997653 77888998877532  222 33 788999999853

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=98.87  E-value=3.6e-09  Score=87.96  Aligned_cols=58  Identities=36%  Similarity=0.483  Sum_probs=47.9

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEE--e-CCcEEEEeCCCcccC
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-GKDLEFLDSPGIIPM  275 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~--~-~~~~~liDTPGi~~~  275 (316)
                      ++|+++|.+|+|||||+|+|.+.....+++.|++|++.....  . +..+.++||||+...
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~   62 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRET   62 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCC
Confidence            479999999999999999999988777888999998864332  2 336889999998754

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PLN03126 Elongation factor Tu; Provisional

Probab=98.86  E-value=2.4e-08  Score=99.92  Aligned_cols=116  Identities=16%  Similarity=0.057  Sum_probs=84.7

Q ss_pred             CCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CC
Q 021210           72 GSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GN  147 (316)
Q Consensus        72 ~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~  147 (316)
                      +.|-...|++.++++|....+|....+.  +-+.||| .++.+++...+..+|++++|+|+..+......+...++  .+
T Consensus       118 ~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh-~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~g  196 (478)
T PLN03126        118 EIDAAPEERARGITINTATVEYETENRHYAHVDCPGH-ADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVG  196 (478)
T ss_pred             cccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCH-HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcC
Confidence            4677788999999999998888765443  7789999 77999999999999999999999987644333332222  24


Q ss_pred             CC-EEEEEEccCCCChHhH-----HHHHHHHHhcC-----ceEEEecccccc
Q 021210          148 RK-RILVLNREDMISMADR-----NAWATYFAKQG-----TKVIFSNGQLGM  188 (316)
Q Consensus       148 k~-~IlVlNK~DLv~~~~~-----~~~~~~~~~~g-----~~vi~iSa~~g~  188 (316)
                      .| +++++||+|+++.++.     ++..+++.+.|     ..++++|+.+|.
T Consensus       197 i~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~  248 (478)
T PLN03126        197 VPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPIISGSALLAL  248 (478)
T ss_pred             CCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCcCcceEEEEEccccc
Confidence            55 7789999999875432     12333444433     468899998874

>cd01894 EngA1 EngA1 subfamily

Probab=98.86  E-value=2e-08  Score=83.60  Aligned_cols=97  Identities=23%  Similarity=0.224  Sum_probs=71.7

Q ss_pred             cccccchHHH-------HHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChHhHHHHHH
Q 021210          100 VQWYPGHIAK-------TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWAT  170 (316)
Q Consensus       100 i~~~Pgh~~~-------~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~~~~~~~  170 (316)
                      +-++||+-..       ..+.....+..+|++++|+|++.+....+..+..++.  +.|+++|+||+|+.+....   .+
T Consensus        49 i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~---~~  125 (157)
T cd01894          49 LIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE---AA  125 (157)
T ss_pred             EEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH---HH
Confidence            5567877321       2334456688999999999999887777766666664  6899999999999876543   23


Q ss_pred             HHHhcCc-eEEEeccccccchhhhHHHHHH
Q 021210          171 YFAKQGT-KVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       171 ~~~~~g~-~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      .+.+.+. +++++|+++|.|++++.+.+.+
T Consensus       126 ~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  155 (157)
T cd01894         126 EFYSLGFGEPIPISAEHGRGIGDLLDAILE  155 (157)
T ss_pred             HHHhcCCCCeEEEecccCCCHHHHHHHHHh
Confidence            3444554 6899999999999998877653

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=98.86  E-value=6.5e-09  Score=105.74  Aligned_cols=64  Identities=23%  Similarity=0.310  Sum_probs=50.3

Q ss_pred             CccceEEeEeccCCCCcchhHHhhhcCcccccCCC-CCceeeEEEE--EeCCcEEEEeCCCcccCCC
Q 021210          214 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPR-PGVTRVLKWV--RFGKDLEFLDSPGIIPMRI  277 (316)
Q Consensus       214 ~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~-pgtT~~~~~~--~~~~~~~liDTPGi~~~~~  277 (316)
                      ....++|+++|.|||||||++|+|++++.+.++.. ++||+.....  ..+..+.+|||||+.....
T Consensus       115 LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~  181 (763)
T TIGR00993       115 LDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSAS  181 (763)
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCcccc
Confidence            34567899999999999999999999987787775 6777643332  2256799999999997644

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=98.85  E-value=3.1e-09  Score=95.26  Aligned_cols=63  Identities=27%  Similarity=0.394  Sum_probs=42.4

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCC-CCCceeeEEEEE---eCCcEEEEeCCCcccCCCCCH
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAP-RPGVTRVLKWVR---FGKDLEFLDSPGIIPMRISDQ  280 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~-~pgtT~~~~~~~---~~~~~~liDTPGi~~~~~~~~  280 (316)
                      ++|+++|.+|+||||++|+|+++....++. ...+|+..+...   -+..+.+|||||+.+....+.
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~   67 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDE   67 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHH
Confidence            479999999999999999999998776653 334666554332   266799999999987766443

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>PRK12735 elongation factor Tu; Reviewed

Probab=98.85  E-value=2.2e-08  Score=98.01  Aligned_cols=128  Identities=18%  Similarity=0.081  Sum_probs=90.1

Q ss_pred             CCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CC
Q 021210           72 GSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GN  147 (316)
Q Consensus        72 ~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~  147 (316)
                      ..|-...|++.++|+|.....|....+.  +-++||| .++.+++...+..+|++++|+|+..+......+...++  .+
T Consensus        49 ~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh-~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~g  127 (396)
T PRK12735         49 QIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGH-ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVG  127 (396)
T ss_pred             hccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCH-HHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcC
Confidence            4566678899999999988888665443  6799999 68889999999999999999999986544333333332  25


Q ss_pred             CCEE-EEEEccCCCChHhHH-----HHHHHHHhcC-----ceEEEecccccc----------chhhhHHHHHHh
Q 021210          148 RKRI-LVLNREDMISMADRN-----AWATYFAKQG-----TKVIFSNGQLGM----------GTMKLSRLAKAL  200 (316)
Q Consensus       148 k~~I-lVlNK~DLv~~~~~~-----~~~~~~~~~g-----~~vi~iSa~~g~----------gi~~L~~~L~~l  200 (316)
                      .|.+ +++||+|+++.++..     +..+++...+     +.++++|+.+|.          ++..|.+.+..+
T Consensus       128 i~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~  201 (396)
T PRK12735        128 VPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY  201 (396)
T ss_pred             CCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence            6655 679999998643321     2223333332     568999999984          556677666654

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=98.85  E-value=1.6e-08  Score=99.47  Aligned_cols=100  Identities=17%  Similarity=0.131  Sum_probs=71.9

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC-CCCcHHHHH---HhCCCCEEEEEEccCCCChHhHH----HHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL-STTHPLMDQ---WLGNRKRILVLNREDMISMADRN----AWATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~-~~~~~~i~~---~l~~k~~IlVlNK~DLv~~~~~~----~~~~~  171 (316)
                      +-++||| .++.+++...+..+|++++|+|++.+. .........   .+..+++++|+||+|+.+.++..    +..+.
T Consensus        89 liDtPG~-~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~~~~~~~~~i~~~  167 (411)
T PRK04000         89 FVDAPGH-ETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKERALENYEQIKEF  167 (411)
T ss_pred             EEECCCH-HHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccchhHHHHHHHHHHH
Confidence            6688999 678888989999999999999999875 232222222   23346789999999998754322    22222


Q ss_pred             HHh---cCceEEEeccccccchhhhHHHHHHh
Q 021210          172 FAK---QGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       172 ~~~---~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      +..   .+.+++++||++|.|+++|.+.|...
T Consensus       168 l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~  199 (411)
T PRK04000        168 VKGTVAENAPIIPVSALHKVNIDALIEAIEEE  199 (411)
T ss_pred             hccccCCCCeEEEEECCCCcCHHHHHHHHHHh
Confidence            222   13678999999999999999887764

>PRK00049 elongation factor Tu; Reviewed

Probab=98.84  E-value=2.5e-08  Score=97.65  Aligned_cols=128  Identities=18%  Similarity=0.086  Sum_probs=91.8

Q ss_pred             CCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--C
Q 021210           72 GSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--N  147 (316)
Q Consensus        72 ~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~  147 (316)
                      +.|-...|++.+.|+|.....|.+..+.  +-++||| .++.+++...+..+|++++|+|++.+.......+..++.  +
T Consensus        49 ~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~-~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g  127 (396)
T PRK00049         49 QIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGH-ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVG  127 (396)
T ss_pred             hccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCH-HHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcC
Confidence            4666778999999999998888765443  6799999 689999999999999999999999876655444444432  5


Q ss_pred             CCEE-EEEEccCCCChHhHH-----HHHHHHHhcC-----ceEEEecccccc----------chhhhHHHHHHh
Q 021210          148 RKRI-LVLNREDMISMADRN-----AWATYFAKQG-----TKVIFSNGQLGM----------GTMKLSRLAKAL  200 (316)
Q Consensus       148 k~~I-lVlNK~DLv~~~~~~-----~~~~~~~~~g-----~~vi~iSa~~g~----------gi~~L~~~L~~l  200 (316)
                      .|.+ +++||+|+++..+..     +..+.+...+     ..++++||.+|.          |+..|.+.|..+
T Consensus       128 ~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~  201 (396)
T PRK00049        128 VPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY  201 (396)
T ss_pred             CCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence            6765 689999998643321     2333344333     467899999875          345666666553

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=98.84  E-value=3.3e-09  Score=104.36  Aligned_cols=55  Identities=33%  Similarity=0.484  Sum_probs=46.9

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe----CCcEEEEeCCCccc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF----GKDLEFLDSPGIIP  274 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~----~~~~~liDTPGi~~  274 (316)
                      .|++||+||||||||||+|.+.+ .+++++|+||+......+    +..+.++||||+..
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak-~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGlie  218 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAK-PKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIE  218 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCC-CccccCCcceeceEEEEEEEeCCceEEEEECCCCcc
Confidence            69999999999999999999876 578899999998764433    45799999999975

>PRK03003 GTP-binding protein Der; Reviewed

Probab=98.84  E-value=4.3e-09  Score=105.20  Aligned_cols=57  Identities=39%  Similarity=0.530  Sum_probs=48.6

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe---CCcEEEEeCCCcc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGII  273 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~  273 (316)
                      ..+|+++|.||||||||+|+|++.....+++.||+|++......   +..+.|+||||+.
T Consensus        38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~   97 (472)
T PRK03003         38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWE   97 (472)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcC
Confidence            45799999999999999999999877788999999998654432   5568899999986

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=98.84  E-value=2e-09  Score=105.43  Aligned_cols=72  Identities=26%  Similarity=0.366  Sum_probs=56.8

Q ss_pred             ccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEeC---CcEEEEeCCCcccCCCCCHHHHHHHH
Q 021210          215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFG---KDLEFLDSPGIIPMRISDQAAAIKLA  287 (316)
Q Consensus       215 ~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~~---~~~~liDTPGi~~~~~~~~~~~~~La  287 (316)
                      +..-+..++|+|||||||++|.+...+ ..+.++++||+..-..+++   ...+++|||||++...++...-.+.+
T Consensus       166 p~trTlllcG~PNVGKSSf~~~vtrad-vevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqs  240 (620)
T KOG1490|consen  166 PNTRTLLVCGYPNVGKSSFNNKVTRAD-DEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQI  240 (620)
T ss_pred             CCcCeEEEecCCCCCcHhhcccccccc-cccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHH
Confidence            345578999999999999999999766 6899999999996544443   34679999999988777766555544

>cd01878 HflX HflX subfamily

Probab=98.83  E-value=1.2e-08  Score=90.02  Aligned_cols=58  Identities=28%  Similarity=0.296  Sum_probs=43.6

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEe-CC-cEEEEeCCCcccC
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GK-DLEFLDSPGIIPM  275 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~-~~-~~~liDTPGi~~~  275 (316)
                      .++|+++|.+|||||||+|+|.+.. ..+.+.+++|.+...  +.. +. .+.++||||+...
T Consensus        41 ~~~I~iiG~~g~GKStLl~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~  102 (204)
T cd01878          41 IPTVALVGYTNAGKSTLFNALTGAD-VYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRD  102 (204)
T ss_pred             CCeEEEECCCCCCHHHHHHHHhcch-hccCCccceeccceeEEEEecCCceEEEeCCCccccC
Confidence            4689999999999999999999875 355566677766432  222 33 6889999999643

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd01895 EngA2 EngA2 subfamily

Probab=98.82  E-value=4.9e-09  Score=88.37  Aligned_cols=59  Identities=37%  Similarity=0.485  Sum_probs=48.0

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EE-eCCcEEEEeCCCcccC
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VR-FGKDLEFLDSPGIIPM  275 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~-~~~~~~liDTPGi~~~  275 (316)
                      +++|+++|.+|+|||||+|+|.+......++.|++|++...  +. .+..+.++||||+...
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~   63 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRK   63 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccc
Confidence            56899999999999999999998876777888999988632  22 2456899999998643

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=98.82  E-value=6.7e-09  Score=103.31  Aligned_cols=124  Identities=21%  Similarity=0.223  Sum_probs=95.8

Q ss_pred             CCCCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC----------CC
Q 021210           69 NSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL----------ST  136 (316)
Q Consensus        69 ~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~----------~~  136 (316)
                      .+=..|+...|||.+.|.|+..-+|.+....  +-++||| ..+..+|...+..||+.++|+|+..+.          +.
T Consensus       226 yawiLDeT~eERerGvTm~v~~~~fes~~~~~tliDaPGh-kdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtr  304 (603)
T KOG0458|consen  226 YAWILDETKEERERGVTMDVKTTWFESKSKIVTLIDAPGH-KDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTR  304 (603)
T ss_pred             eeEEeccchhhhhcceeEEeeeEEEecCceeEEEecCCCc-cccchhhhccccccceEEEEEECCcchhhhccCCCCchH
Confidence            3345688899999999999999999866553  8899998 889999999999999999999996432          33


Q ss_pred             CcHHHHHHhCCCCEEEEEEccCCCChHh-----HHHHHH-HH-HhcC-----ceEEEeccccccchhhh
Q 021210          137 THPLMDQWLGNRKRILVLNREDMISMAD-----RNAWAT-YF-AKQG-----TKVIFSNGQLGMGTMKL  193 (316)
Q Consensus       137 ~~~~i~~~l~~k~~IlVlNK~DLv~~~~-----~~~~~~-~~-~~~g-----~~vi~iSa~~g~gi~~L  193 (316)
                      .+..+.+.++...+|+++||+|+++.++     +...+. ++ +..|     ..++|+|+..|+|+-+.
T Consensus       305 Eha~llr~Lgi~qlivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  305 EHALLLRSLGISQLIVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             HHHHHHHHcCcceEEEEeecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence            4556677788889999999999997653     222222 33 2334     47899999999986543

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.80  E-value=5.2e-08  Score=94.53  Aligned_cols=128  Identities=22%  Similarity=0.195  Sum_probs=102.0

Q ss_pred             cchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC---CCCcHHHHHHhCCC
Q 021210           74 IEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL---STTHPLMDQWLGNR  148 (316)
Q Consensus        74 ~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~---~~~~~~i~~~l~~k  148 (316)
                      |=+..|.+.++|+|-.++||...-..  +.+.||| .++.++|...+.-+|.+++|||+.+++   +.++..+.++++.+
T Consensus        26 d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh-~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~  104 (447)
T COG3276          26 DRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGH-PDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIK  104 (447)
T ss_pred             ccchhhhhcCceEeeeeEeccCCCCceEEeeCCCc-HHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCC
Confidence            34456777788999999998877554  7788999 889999999999999999999997665   55677778888888


Q ss_pred             CEEEEEEccCCCChHhHHHHHHHHHh-c---CceEEEeccccccchhhhHHHHHHhhh
Q 021210          149 KRILVLNREDMISMADRNAWATYFAK-Q---GTKVIFSNGQLGMGTMKLSRLAKALAS  202 (316)
Q Consensus       149 ~~IlVlNK~DLv~~~~~~~~~~~~~~-~---g~~vi~iSa~~g~gi~~L~~~L~~l~~  202 (316)
                      ..++|+||+|+++...+++..+.+.. .   ..+++.+|++.|+|+++|++.|..+..
T Consensus       105 ~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~  162 (447)
T COG3276         105 NGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELIDLLE  162 (447)
T ss_pred             ceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCCHHHHHHHHHHhhh
Confidence            89999999999987654444333221 1   145688999999999999999998874

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=98.80  E-value=6.8e-09  Score=88.08  Aligned_cols=55  Identities=40%  Similarity=0.609  Sum_probs=44.1

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe---CCcEEEEeCCCccc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP  274 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~~  274 (316)
                      +|+++|.+|||||||+|+|.+.. ..+++.|++|++......   +.++.++||||+..
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~   59 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAK-PEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLD   59 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCC-CccCCCCCcccceeEEEEccCceEEEEEECCCcCC
Confidence            58999999999999999999876 356677888887654332   34789999999853

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=98.80  E-value=6.4e-08  Score=84.94  Aligned_cols=118  Identities=19%  Similarity=0.109  Sum_probs=77.2

Q ss_pred             hhhhhccccCCcceEEEecccc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCEEE
Q 021210           77 YEEECDWADLDADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRIL  152 (316)
Q Consensus        77 ~~e~e~~~~~d~~~~~~~~~~~--~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~Il  152 (316)
                      ..|.+.+.+++.....+.....  .+-++||| .++...+...+..+|.+++|+|+.++.......+...+  .+.|+++
T Consensus        44 ~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~-~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~ii  122 (194)
T cd01891          44 DLERERGITILAKNTAVTYKDTKINIVDTPGH-ADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIV  122 (194)
T ss_pred             hhHHhcccccccceeEEEECCEEEEEEECCCc-HHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEE
Confidence            3455566666655443333222  36788999 66777888889999999999999875433222222222  3679999


Q ss_pred             EEEccCCCChH---hHHHHHHHHHh-------cCceEEEeccccccchhhhHH
Q 021210          153 VLNREDMISMA---DRNAWATYFAK-------QGTKVIFSNGQLGMGTMKLSR  195 (316)
Q Consensus       153 VlNK~DLv~~~---~~~~~~~~~~~-------~g~~vi~iSa~~g~gi~~L~~  195 (316)
                      |+||+|+....   ..+++.+.+..       .++.++++||++|.|+.++..
T Consensus       123 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~~~  175 (194)
T cd01891         123 VINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNLED  175 (194)
T ss_pred             EEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCEEEeehhcccccccccc
Confidence            99999996432   13344444422       246789999999999866543

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd01894 EngA1 EngA1 subfamily

Probab=98.79  E-value=4.8e-09  Score=87.38  Aligned_cols=55  Identities=45%  Similarity=0.663  Sum_probs=45.1

Q ss_pred             eEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe---CCcEEEEeCCCcccC
Q 021210          221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPM  275 (316)
Q Consensus       221 ~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~~~  275 (316)
                      +++|.+|||||||+|+|.+.....++..+++|++......   +..+.++||||+...
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~   58 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPD   58 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCc
Confidence            4799999999999999998877778888999987654332   456889999999754

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=98.78  E-value=8.7e-09  Score=86.13  Aligned_cols=54  Identities=41%  Similarity=0.655  Sum_probs=43.2

Q ss_pred             EeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEe-CCcEEEEeCCCcccCC
Q 021210          222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIPMR  276 (316)
Q Consensus       222 ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~-~~~~~liDTPGi~~~~  276 (316)
                      ++|.+|||||||+|+|.+.. ..++..||+|++...  +.. +.++.++||||+....
T Consensus         1 l~G~~~~GKssl~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~   57 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLS   57 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCc-ccccCCCCcccccceEEEeeCCeEEEEEECCCccccC
Confidence            58999999999999999876 678888999988642  333 4568999999997543

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>PRK09602 translation-associated GTPase; Reviewed

Probab=98.77  E-value=7.7e-09  Score=101.12  Aligned_cols=57  Identities=30%  Similarity=0.373  Sum_probs=45.4

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEe-------------------------CCcEEEEeCC
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-------------------------GKDLEFLDSP  270 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~-------------------------~~~~~liDTP  270 (316)
                      ++|++||.||||||||+|+|++.+ ..++++|+||++...  ...                         ...++++|||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~-~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a   80 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLAD-VEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA   80 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCc-ccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence            579999999999999999999876 577999999987532  110                         1246799999


Q ss_pred             CcccC
Q 021210          271 GIIPM  275 (316)
Q Consensus       271 Gi~~~  275 (316)
                      |+...
T Consensus        81 Gl~~g   85 (396)
T PRK09602         81 GLVPG   85 (396)
T ss_pred             CcCCC
Confidence            99754

>cd04163 Era Era subfamily

Probab=98.77  E-value=1.3e-08  Score=84.85  Aligned_cols=59  Identities=36%  Similarity=0.565  Sum_probs=46.9

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe---CCcEEEEeCCCcccC
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPM  275 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~~~  275 (316)
                      ..+|+++|.+|+|||||+|+|++.....+++.+++|+.......   +..+.++||||+...
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~   64 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKP   64 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcc
Confidence            35799999999999999999999887777777888877543222   245889999998644

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=98.77  E-value=7.5e-09  Score=98.90  Aligned_cols=57  Identities=35%  Similarity=0.496  Sum_probs=46.7

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEeC--CcEEEEeCCCcccC
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG--KDLEFLDSPGIIPM  275 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~~--~~~~liDTPGi~~~  275 (316)
                      ..|++||+||||||||+|+|.+.+ ..++++|+||+....  +..+  ..+.|+||||+...
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~-~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~  218 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEG  218 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCC-ccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccC
Confidence            369999999999999999999865 578999999988543  3332  47899999999753

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=98.76  E-value=7.6e-08  Score=92.81  Aligned_cols=95  Identities=17%  Similarity=0.228  Sum_probs=65.6

Q ss_pred             ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH----HHHHHhC--CCCEEEEEEccCCCChHhHHHHHHHHHh
Q 021210          101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP----LMDQWLG--NRKRILVLNREDMISMADRNAWATYFAK  174 (316)
Q Consensus       101 ~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~----~i~~~l~--~k~~IlVlNK~DLv~~~~~~~~~~~~~~  174 (316)
                      ...|.+..+..+.+.+.+.+||++|+|+|+.++....+.    .+...+.  ++|+++|+||+|+.+..+...    +..
T Consensus       249 ~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v~~----~~~  324 (351)
T TIGR03156       249 RDLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRIER----LEE  324 (351)
T ss_pred             ccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhHHH----HHh
Confidence            333444445566677789999999999999987654332    1222233  689999999999986543322    112


Q ss_pred             cCceEEEeccccccchhhhHHHHHH
Q 021210          175 QGTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       175 ~g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      ...+++++||++|.|+++|.+.+.+
T Consensus       325 ~~~~~i~iSAktg~GI~eL~~~I~~  349 (351)
T TIGR03156       325 GYPEAVFVSAKTGEGLDLLLEAIAE  349 (351)
T ss_pred             CCCCEEEEEccCCCCHHHHHHHHHh
Confidence            2245799999999999999887654

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=98.73  E-value=1.4e-08  Score=106.73  Aligned_cols=57  Identities=32%  Similarity=0.522  Sum_probs=47.8

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe---CCcEEEEeCCCcccC
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPM  275 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~~~  275 (316)
                      .+|+++|.||||||||+|+|++.+ ..+++.||+|.+.....+   +..+.++||||+.+.
T Consensus         4 ~~IaLvG~pNvGKSTLfN~Ltg~~-~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl   63 (772)
T PRK09554          4 LTIGLIGNPNSGKTTLFNQLTGAR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSL   63 (772)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCceEeeEEEEEEcCceEEEEEECCCcccc
Confidence            579999999999999999999876 489999999998653332   446899999999754

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=98.73  E-value=1.3e-08  Score=106.70  Aligned_cols=57  Identities=42%  Similarity=0.578  Sum_probs=49.1

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe---CCcEEEEeCCCccc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP  274 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~~  274 (316)
                      .+|+++|.||||||||+|+|++.+...+++.||+|++......   +..+.++||||+..
T Consensus       276 ~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~  335 (712)
T PRK09518        276 GVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEA  335 (712)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCC
Confidence            5799999999999999999999887889999999999765433   45789999999863

>PRK05433 GTP-binding protein LepA; Provisional

Probab=98.73  E-value=1.2e-07  Score=97.49  Aligned_cols=129  Identities=15%  Similarity=0.070  Sum_probs=88.8

Q ss_pred             CCCcchhhhhhccccCCcceE--EEec--c-cc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHH-
Q 021210           71 NGSIEAYEEECDWADLDADLY--YWTK--S-LR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMD-  142 (316)
Q Consensus        71 ~~~~g~~~e~e~~~~~d~~~~--~~~~--~-~~--~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~-  142 (316)
                      .+.|-...|++.+++++....  .|..  . ..  .+-++||| .++...+...++.+|.+|+|+|+..+......... 
T Consensus        42 ~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh-~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~  120 (600)
T PRK05433         42 QVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH-VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY  120 (600)
T ss_pred             ccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc-HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHH
Confidence            455666779999999987655  3331  1 11  26689999 67888888899999999999999987654332222 


Q ss_pred             HHh-CCCCEEEEEEccCCCChHhHHHHHHHHH-hcCc---eEEEeccccccchhhhHHHHHHhh
Q 021210          143 QWL-GNRKRILVLNREDMISMADRNAWATYFA-KQGT---KVIFSNGQLGMGTMKLSRLAKALA  201 (316)
Q Consensus       143 ~~l-~~k~~IlVlNK~DLv~~~~~~~~~~~~~-~~g~---~vi~iSa~~g~gi~~L~~~L~~l~  201 (316)
                      .+. .+.|+++|+||+|+..... ....+.+. ..+.   +++++||++|.|+++|.+.+....
T Consensus       121 ~~~~~~lpiIvViNKiDl~~a~~-~~v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~l  183 (600)
T PRK05433        121 LALENDLEIIPVLNKIDLPAADP-ERVKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERI  183 (600)
T ss_pred             HHHHCCCCEEEEEECCCCCcccH-HHHHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhC
Confidence            222 3678999999999864321 11112222 1333   489999999999999988876543

>TIGR01393 lepA GTP-binding protein LepA

Probab=98.73  E-value=9.9e-08  Score=97.95  Aligned_cols=127  Identities=15%  Similarity=0.108  Sum_probs=88.8

Q ss_pred             CCCcchhhhhhccccCCcceEE--Ee--cc-cc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH-HH
Q 021210           71 NGSIEAYEEECDWADLDADLYY--WT--KS-LR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-MD  142 (316)
Q Consensus        71 ~~~~g~~~e~e~~~~~d~~~~~--~~--~~-~~--~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~-i~  142 (316)
                      .+.|-...|++.+++++.....  |.  +. ..  .+-++||| .++...+...++.+|.+|+|+|+.++....... +.
T Consensus        38 ~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~-~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~  116 (595)
T TIGR01393        38 QVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH-VDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVY  116 (595)
T ss_pred             cccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCc-HHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHH
Confidence            4566666789999999876653  32  11 11  26789999 678888889999999999999999876544322 22


Q ss_pred             HHh-CCCCEEEEEEccCCCChHh---HHHHHHHHHhcCc---eEEEeccccccchhhhHHHHHHhh
Q 021210          143 QWL-GNRKRILVLNREDMISMAD---RNAWATYFAKQGT---KVIFSNGQLGMGTMKLSRLAKALA  201 (316)
Q Consensus       143 ~~l-~~k~~IlVlNK~DLv~~~~---~~~~~~~~~~~g~---~vi~iSa~~g~gi~~L~~~L~~l~  201 (316)
                      .++ .+.|+++|+||+|+.+...   .+++.+.   .+.   +++++||++|.|+++|.+.+.+..
T Consensus       117 ~~~~~~ipiIiViNKiDl~~~~~~~~~~el~~~---lg~~~~~vi~vSAktG~GI~~Lle~I~~~l  179 (595)
T TIGR01393       117 LALENDLEIIPVINKIDLPSADPERVKKEIEEV---IGLDASEAILASAKTGIGIEEILEAIVKRV  179 (595)
T ss_pred             HHHHcCCCEEEEEECcCCCccCHHHHHHHHHHH---hCCCcceEEEeeccCCCCHHHHHHHHHHhC
Confidence            222 3679999999999864321   1222222   232   479999999999999988876543

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=98.72  E-value=1.6e-08  Score=84.63  Aligned_cols=55  Identities=31%  Similarity=0.564  Sum_probs=46.8

Q ss_pred             EeEeccCCCCcchhHHhhhc-CcccccCCCCCceeeEEEEEeCCcEEEEeCCCccc
Q 021210          220 AGIVGYPNVGKSSLINRLLK-RRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIP  274 (316)
Q Consensus       220 i~ivG~pNvGKSTLiN~L~~-~~~~~vs~~pgtT~~~~~~~~~~~~~liDTPGi~~  274 (316)
                      |+++|.+|+|||||+|+|.+ ......++.+++|.....+..+..+.++||||+..
T Consensus         2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~D~~g~~~   57 (170)
T cd01876           2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVNDKFRLVDLPGYGY   57 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccCeEEEecCCCccc
Confidence            79999999999999999994 44456778889998887777777899999999864

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=98.71  E-value=9.1e-09  Score=87.59  Aligned_cols=51  Identities=39%  Similarity=0.583  Sum_probs=41.5

Q ss_pred             EeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEe--CCcEEEEeCCCcc
Q 021210          222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF--GKDLEFLDSPGII  273 (316)
Q Consensus       222 ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~--~~~~~liDTPGi~  273 (316)
                      ++|.+|||||||+|+|.+... .++..+++|++...  +..  +..+.++||||+.
T Consensus         1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~   55 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLI   55 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccc
Confidence            589999999999999998775 67888999987532  222  4678999999985

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=98.71  E-value=1.8e-07  Score=86.73  Aligned_cols=88  Identities=23%  Similarity=0.206  Sum_probs=74.5

Q ss_pred             hhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC---CCCcHHHHHHhCCCCEE
Q 021210           77 YEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL---STTHPLMDQWLGNRKRI  151 (316)
Q Consensus        77 ~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~---~~~~~~i~~~l~~k~~I  151 (316)
                      -.|++.++|++.+++.+.+..|.  --++||| ..|.++|...+.++|-.|+|+.|.+++   +..|..+.+..+-..++
T Consensus        54 PeEk~rGITIntahveyet~~rhyahVDcPGH-aDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~iv  132 (394)
T COG0050          54 PEEKARGITINTAHVEYETANRHYAHVDCPGH-ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIV  132 (394)
T ss_pred             chHhhcCceeccceeEEecCCceEEeccCCCh-HHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEE
Confidence            45888999999999999988886  5589999 899999999999999999999988765   55566666667677889


Q ss_pred             EEEEccCCCChHhH
Q 021210          152 LVLNREDMISMADR  165 (316)
Q Consensus       152 lVlNK~DLv~~~~~  165 (316)
                      +++||+|+++..++
T Consensus       133 vflnK~Dmvdd~el  146 (394)
T COG0050         133 VFLNKVDMVDDEEL  146 (394)
T ss_pred             EEEecccccCcHHH
Confidence            99999999986553

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.70  E-value=1.2e-07  Score=89.25  Aligned_cols=155  Identities=23%  Similarity=0.273  Sum_probs=107.5

Q ss_pred             hhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC---CCCcHHHHHHhCCCCEEE
Q 021210           78 EEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL---STTHPLMDQWLGNRKRIL  152 (316)
Q Consensus        78 ~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~---~~~~~~i~~~l~~k~~Il  152 (316)
                      .|...++|+.++++.+.+..|.  =.++||| +.|.++|....++.|..|+||.|.++.   +.+|..+++.++-+.+++
T Consensus        97 EEkaRGITIn~aHveYeTa~RhYaH~DCPGH-ADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivv  175 (449)
T KOG0460|consen   97 EEKARGITINAAHVEYETAKRHYAHTDCPGH-ADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVV  175 (449)
T ss_pred             hhhhccceEeeeeeeeeccccccccCCCCch-HHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEE
Confidence            3666789999999999999887  5689999 899999999999999999999988765   556777788888889999


Q ss_pred             EEEccCCCChHhHHHH-----HHHHHhcC-----ceEEEec---ccccc----chhhhHHHHHHhhhhhhh---------
Q 021210          153 VLNREDMISMADRNAW-----ATYFAKQG-----TKVIFSN---GQLGM----GTMKLSRLAKALASDVNV---------  206 (316)
Q Consensus       153 VlNK~DLv~~~~~~~~-----~~~~~~~g-----~~vi~iS---a~~g~----gi~~L~~~L~~l~~~~~~---------  206 (316)
                      .+||.|+++..+.-+.     .+.+...|     .++|.=|   |..|+    |.+.+.+++..+-..+..         
T Consensus       176 fiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R~~~~pF  255 (449)
T KOG0460|consen  176 FINKVDLVDDPEMLELVEMEIRELLSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPERDLDKPF  255 (449)
T ss_pred             EEecccccCCHHHHHHHHHHHHHHHHHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCcccccCCCc
Confidence            9999999966543322     23333444     3455544   44553    333344433333221110         


Q ss_pred             ------------------hhcccCCCccceEEeEeccCCCCcchh
Q 021210          207 ------------------KRRSKGLLPRAVRAGIVGYPNVGKSSL  233 (316)
Q Consensus       207 ------------------~r~~~~~~~~~~~i~ivG~pNvGKSTL  233 (316)
                                        -+-++|..+..-++=++|+.-.=|||.
T Consensus       256 l~pie~vfsI~GRGTVvtGrlERG~lKkG~e~eivG~~~~lkttv  300 (449)
T KOG0460|consen  256 LLPIEDVFSIPGRGTVVTGRLERGVLKKGDEVEIVGHNKTLKTTV  300 (449)
T ss_pred             eeehhheeeecCCceEEEEEEeecccccCCEEEEeccCcceeeEe
Confidence                              022455556666788999887777764

>PRK15494 era GTPase Era; Provisional

Probab=98.70  E-value=1.9e-07  Score=89.63  Aligned_cols=105  Identities=16%  Similarity=0.086  Sum_probs=73.4

Q ss_pred             cccccchH-------HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChHhHHHHHH
Q 021210          100 VQWYPGHI-------AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWAT  170 (316)
Q Consensus       100 i~~~Pgh~-------~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~~~~~~~  170 (316)
                      +-++||..       ..+.+.....+..+|++|+|+|+..++...+..+...+.  +.+.++|+||+|+.+. ...+..+
T Consensus       104 ~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~-~~~~~~~  182 (339)
T PRK15494        104 LYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESK-YLNDIKA  182 (339)
T ss_pred             EEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc-cHHHHHH
Confidence            44667763       123444556688999999999998876655555554443  5688999999999754 2334444


Q ss_pred             HHHhcC--ceEEEeccccccchhhhHHHHHHhhhhhh
Q 021210          171 YFAKQG--TKVIFSNGQLGMGTMKLSRLAKALASDVN  205 (316)
Q Consensus       171 ~~~~~g--~~vi~iSa~~g~gi~~L~~~L~~l~~~~~  205 (316)
                      ++...+  ..++++||++|.|+++|.+.+....+..+
T Consensus       183 ~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~  219 (339)
T PRK15494        183 FLTENHPDSLLFPISALSGKNIDGLLEYITSKAKISP  219 (339)
T ss_pred             HHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCCCCC
Confidence            444433  46899999999999999998887665433

>PRK00089 era GTPase Era; Reviewed

Probab=98.70  E-value=1.9e-07  Score=87.38  Aligned_cols=92  Identities=18%  Similarity=0.177  Sum_probs=70.1

Q ss_pred             HHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCC-ChHhHHHHHHHHHhc-C-ceEEEeccc
Q 021210          111 EKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMI-SMADRNAWATYFAKQ-G-TKVIFSNGQ  185 (316)
Q Consensus       111 ~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv-~~~~~~~~~~~~~~~-g-~~vi~iSa~  185 (316)
                      .+.....+..+|++++|+|+..+.+.....+...+.  ++|+++|+||+|+. +..+.....+.+.+. + .+++++||+
T Consensus        75 ~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~  154 (292)
T PRK00089         75 NKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISAL  154 (292)
T ss_pred             HHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCC
Confidence            345556789999999999999876666666666654  57999999999998 545555555555442 2 568999999


Q ss_pred             cccchhhhHHHHHHhhh
Q 021210          186 LGMGTMKLSRLAKALAS  202 (316)
Q Consensus       186 ~g~gi~~L~~~L~~l~~  202 (316)
                      +|.|+++|.+.+....+
T Consensus       155 ~~~gv~~L~~~L~~~l~  171 (292)
T PRK00089        155 KGDNVDELLDVIAKYLP  171 (292)
T ss_pred             CCCCHHHHHHHHHHhCC
Confidence            99999999988877654

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=98.69  E-value=1.9e-07  Score=91.84  Aligned_cols=123  Identities=15%  Similarity=0.146  Sum_probs=81.4

Q ss_pred             hhccccCCcceEEEeccccc--cccccchH---------HHHH-HHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC-
Q 021210           80 ECDWADLDADLYYWTKSLRP--VQWYPGHI---------AKTE-KELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG-  146 (316)
Q Consensus        80 ~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~---------~~~~-r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~-  146 (316)
                      +..+.+.|.-...+...-..  +-++||+.         +.+. ......+..+|++|+|+|+..+.+..+..+...+. 
T Consensus       202 ~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~  281 (429)
T TIGR03594       202 DIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILE  281 (429)
T ss_pred             CCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH
Confidence            34455555544444322222  56788852         1111 23345789999999999999888776666655543 


Q ss_pred             -CCCEEEEEEccCCC-ChHhHHHHHHHHHhc-----CceEEEeccccccchhhhHHHHHHhhh
Q 021210          147 -NRKRILVLNREDMI-SMADRNAWATYFAKQ-----GTKVIFSNGQLGMGTMKLSRLAKALAS  202 (316)
Q Consensus       147 -~k~~IlVlNK~DLv-~~~~~~~~~~~~~~~-----g~~vi~iSa~~g~gi~~L~~~L~~l~~  202 (316)
                       ++|+++|+||+|++ +....++..+.+...     +.+++++||++|.|++++.+.+..+..
T Consensus       282 ~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~  344 (429)
T TIGR03594       282 AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYE  344 (429)
T ss_pred             cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence             68999999999998 443333443333321     257899999999999999888776543

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=98.68  E-value=2.4e-08  Score=90.83  Aligned_cols=56  Identities=34%  Similarity=0.517  Sum_probs=45.3

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--E-EeCCcEEEEeCCCcccC
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--V-RFGKDLEFLDSPGIIPM  275 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~-~~~~~~~liDTPGi~~~  275 (316)
                      +++++|.||+|||||+|+|.+.. ..++..|++|.+...  + ..+..+.++||||+...
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~-~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~   60 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTK-SEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEG   60 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC-ccccCCCCccccceEEEEEECCeEEEEEECCCcccc
Confidence            58999999999999999999876 567889999977532  2 22557899999998753

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=98.67  E-value=1.1e-07  Score=80.49  Aligned_cols=97  Identities=11%  Similarity=0.060  Sum_probs=64.5

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF  172 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~  172 (316)
                      +-++||| .++.......++.+|++++|+|+.++.+..  ...+..++     .+.|+++++||+|+.+.....+..+.+
T Consensus        54 l~Dt~G~-~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~  132 (167)
T cd04160          54 FWDLGGQ-ESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVF  132 (167)
T ss_pred             EEECCCC-hhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHh
Confidence            5567998 445555667789999999999997653211  11222222     257999999999987543222222322


Q ss_pred             Hh-------cCceEEEeccccccchhhhHHHH
Q 021210          173 AK-------QGTKVIFSNGQLGMGTMKLSRLA  197 (316)
Q Consensus       173 ~~-------~g~~vi~iSa~~g~gi~~L~~~L  197 (316)
                      ..       .+.+++.+||++|.|++++.+.|
T Consensus       133 ~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l  164 (167)
T cd04160         133 QDKAEEIGRRDCLVLPVSALEGTGVREGIEWL  164 (167)
T ss_pred             ccccccccCCceEEEEeeCCCCcCHHHHHHHH
Confidence            21       12468999999999998887665

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>PRK09866 hypothetical protein; Provisional

Probab=98.67  E-value=1.4e-07  Score=96.00  Aligned_cols=100  Identities=15%  Similarity=0.059  Sum_probs=74.6

Q ss_pred             cccccchHH----HHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--C--CCEEEEEEccCCCCh-----HhHH
Q 021210          100 VQWYPGHIA----KTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--N--RKRILVLNREDMISM-----ADRN  166 (316)
Q Consensus       100 i~~~Pgh~~----~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~--k~~IlVlNK~DLv~~-----~~~~  166 (316)
                      +-++||-+.    ...+.|.+.+.++|+||+|+|+..+.+..+..+.+.+.  +  .|+++|+||+|+.+.     +...
T Consensus       234 FVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dreeddkE~Ll  313 (741)
T PRK09866        234 LLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRNSDDADQVR  313 (741)
T ss_pred             EEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcccchHHHHH
Confidence            557888754    14557788999999999999999887777777777665  3  399999999999752     2333


Q ss_pred             HHHHH-HHhcC---ceEEEeccccccchhhhHHHHHH
Q 021210          167 AWATY-FAKQG---TKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       167 ~~~~~-~~~~g---~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      ++.+. +.+.+   .+++++||+.|.|++.|.+.+..
T Consensus       314 e~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        314 ALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             HHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            33322 22222   36899999999999999988776

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=98.66  E-value=2.2e-07  Score=78.45  Aligned_cols=102  Identities=18%  Similarity=0.088  Sum_probs=67.8

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCEEEEEEccCCCChHh--HHHHHHHHH--
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMAD--RNAWATYFA--  173 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~IlVlNK~DLv~~~~--~~~~~~~~~--  173 (316)
                      +-++||+ ..+.......+..+|++++|+|+..+..........++  .++|+++|+||+|+.....  ..+....+.  
T Consensus        54 iiDtpG~-~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~  132 (168)
T cd01887          54 FIDTPGH-EAFTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQ  132 (168)
T ss_pred             EEeCCCc-HHHHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccHHHHHHHHHHhhcc
Confidence            6678998 34544445678899999999999876533222222222  3789999999999974321  111111111  


Q ss_pred             ---hc--CceEEEeccccccchhhhHHHHHHhhh
Q 021210          174 ---KQ--GTKVIFSNGQLGMGTMKLSRLAKALAS  202 (316)
Q Consensus       174 ---~~--g~~vi~iSa~~g~gi~~L~~~L~~l~~  202 (316)
                         ..  ...++++|+++|.|+++|.+.+.++..
T Consensus       133 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  166 (168)
T cd01887         133 GEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLAE  166 (168)
T ss_pred             ccccccCcCcEEEeecccCCCHHHHHHHHHHhhh
Confidence               11  256899999999999999988776543

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=98.65  E-value=1.6e-07  Score=96.25  Aligned_cols=128  Identities=18%  Similarity=0.078  Sum_probs=89.8

Q ss_pred             CCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CC
Q 021210           72 GSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GN  147 (316)
Q Consensus        72 ~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~  147 (316)
                      +.|-...|++.++|+......+...-.+  +-++||| .++..++...++.+|.+++|+|+..+.......+...+  .+
T Consensus        38 ~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh-~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~  116 (594)
T TIGR01394        38 VMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGH-ADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELG  116 (594)
T ss_pred             cccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCH-HHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCC
Confidence            6677778999999998876644433333  7789999 77888899999999999999999876543333333332  26


Q ss_pred             CCEEEEEEccCCCCh--Hh-HHHHHHHHHhc-------CceEEEecccccc----------chhhhHHHHHHh
Q 021210          148 RKRILVLNREDMISM--AD-RNAWATYFAKQ-------GTKVIFSNGQLGM----------GTMKLSRLAKAL  200 (316)
Q Consensus       148 k~~IlVlNK~DLv~~--~~-~~~~~~~~~~~-------g~~vi~iSa~~g~----------gi~~L~~~L~~l  200 (316)
                      .|.++|+||+|+.+.  .+ .++..+.+.+.       .++++++||++|.          |+..|.+.+...
T Consensus       117 ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~  189 (594)
T TIGR01394       117 LKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRH  189 (594)
T ss_pred             CCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHh
Confidence            789999999998643  12 23344444322       3468899999996          677776665544

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=98.65  E-value=1.6e-07  Score=77.88  Aligned_cols=84  Identities=20%  Similarity=0.254  Sum_probs=65.5

Q ss_pred             HHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCEEEEEEccCCCChHhHHHHHHHHHhcCceEEEeccccccchh
Q 021210          112 KELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTM  191 (316)
Q Consensus       112 r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~~vi~iSa~~g~gi~  191 (316)
                      +.....+.++|++++|+|+..+.+..+..+......+|+++|+||+|+.+....     .....+.+++.+|++++.|++
T Consensus        72 ~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~vi~v~nK~D~~~~~~~-----~~~~~~~~~~~~Sa~~~~~v~  146 (157)
T cd04164          72 ERAREAIEEADLVLFVIDASRGLDEEDLEILELPADKPIIVVLNKSDLLPDSEL-----LSLLAGKPIIAISAKTGEGLD  146 (157)
T ss_pred             HHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHhhcCCCEEEEEEchhcCCcccc-----ccccCCCceEEEECCCCCCHH
Confidence            345567889999999999998777766666555568999999999999876543     223334678999999999999


Q ss_pred             hhHHHHHHh
Q 021210          192 KLSRLAKAL  200 (316)
Q Consensus       192 ~L~~~L~~l  200 (316)
                      +|.+.+...
T Consensus       147 ~l~~~l~~~  155 (157)
T cd04164         147 ELKEALLEL  155 (157)
T ss_pred             HHHHHHHHh
Confidence            988876653

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd01895 EngA2 EngA2 subfamily

Probab=98.65  E-value=5.8e-07  Score=75.62  Aligned_cols=86  Identities=16%  Similarity=0.224  Sum_probs=63.4

Q ss_pred             HHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCEEEEEEccCCCCh--HhHHHHHHHHHh-c----CceEEEecc
Q 021210          114 LKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISM--ADRNAWATYFAK-Q----GTKVIFSNG  184 (316)
Q Consensus       114 l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~IlVlNK~DLv~~--~~~~~~~~~~~~-~----g~~vi~iSa  184 (316)
                      ....+..+|++++|+|+..+.+.....+...+  .++|+++++||+|+.+.  ...+.+.+.+.+ .    ..+++++|+
T Consensus        78 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  157 (174)
T cd01895          78 TLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISA  157 (174)
T ss_pred             HHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEec
Confidence            34567899999999999988776655555444  37899999999999866  334444444432 1    256899999


Q ss_pred             ccccchhhhHHHHHH
Q 021210          185 QLGMGTMKLSRLAKA  199 (316)
Q Consensus       185 ~~g~gi~~L~~~L~~  199 (316)
                      +++.|++++.+.+.+
T Consensus       158 ~~~~~i~~~~~~l~~  172 (174)
T cd01895         158 LTGQGVDKLFDAIDE  172 (174)
T ss_pred             cCCCCHHHHHHHHHH
Confidence            999999998877654

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=98.65  E-value=2.3e-08  Score=95.52  Aligned_cols=58  Identities=38%  Similarity=0.497  Sum_probs=46.9

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEe-------------------CCcEEEEeCCCcccC
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-------------------GKDLEFLDSPGIIPM  275 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~-------------------~~~~~liDTPGi~~~  275 (316)
                      .++++|||.||||||||+|+|++.. +.++++|+||.+...  +.+                   ...+.++|.+|+.+.
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G   80 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG   80 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCC-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence            4679999999999999999999887 889999999998421  111                   123789999999864

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=98.64  E-value=1.1e-07  Score=90.97  Aligned_cols=101  Identities=18%  Similarity=0.220  Sum_probs=70.0

Q ss_pred             cccccchHH------HHHHHHHHHHhhcCeEEEEEeCCCCCCC-----Cc---HHHHHH---hCCCCEEEEEEccCCCCh
Q 021210          100 VQWYPGHIA------KTEKELKDQLKLMDVVIEVRDARIPLST-----TH---PLMDQW---LGNRKRILVLNREDMISM  162 (316)
Q Consensus       100 i~~~Pgh~~------~~~r~l~~~i~~aDlIl~VvDar~~~~~-----~~---~~i~~~---l~~k~~IlVlNK~DLv~~  162 (316)
                      +.++||...      ....+..+.++++|++|+|+|+......     ..   .++..+   +.++|+++|+||+|+.+.
T Consensus       209 i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~  288 (329)
T TIGR02729       209 IADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE  288 (329)
T ss_pred             EEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh
Confidence            678898742      2344556678899999999999864111     11   112111   236899999999999876


Q ss_pred             HhHHHHHHHHH-hcCceEEEeccccccchhhhHHHHHHh
Q 021210          163 ADRNAWATYFA-KQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       163 ~~~~~~~~~~~-~~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      .+.+++.+.+. +.+.+++++||+++.|+++|.+.+.++
T Consensus       289 ~~~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~~  327 (329)
T TIGR02729       289 EELAELLKELKKALGKPVFPISALTGEGLDELLYALAEL  327 (329)
T ss_pred             HHHHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHHHH
Confidence            55555555554 345679999999999999988876543

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd01898 Obg Obg subfamily

Probab=98.63  E-value=1.1e-07  Score=80.74  Aligned_cols=88  Identities=17%  Similarity=0.193  Sum_probs=60.9

Q ss_pred             HHHHHHHhhcCeEEEEEeCCCC-CCCCc-HH----HHHHh---CCCCEEEEEEccCCCChHhHHHHHHHHHhc--CceEE
Q 021210          112 KELKDQLKLMDVVIEVRDARIP-LSTTH-PL----MDQWL---GNRKRILVLNREDMISMADRNAWATYFAKQ--GTKVI  180 (316)
Q Consensus       112 r~l~~~i~~aDlIl~VvDar~~-~~~~~-~~----i~~~l---~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~--g~~vi  180 (316)
                      +.....+..+|++++|+|+.++ .+..+ ..    +....   ..+|+++|+||+|+.+.....++.+.+...  +..++
T Consensus        70 ~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  149 (170)
T cd01898          70 HRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVF  149 (170)
T ss_pred             HHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEE
Confidence            3444567789999999999876 22111 11    21211   257899999999998776655555444333  46789


Q ss_pred             EeccccccchhhhHHHHHH
Q 021210          181 FSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       181 ~iSa~~g~gi~~L~~~L~~  199 (316)
                      ++|++.+.|++++.+.+.+
T Consensus       150 ~~Sa~~~~gi~~l~~~i~~  168 (170)
T cd01898         150 PISALTGEGLDELLRKLAE  168 (170)
T ss_pred             EEecCCCCCHHHHHHHHHh
Confidence            9999999999998877654

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd01899 Ygr210 Ygr210 subfamily

Probab=98.63  E-value=2.7e-08  Score=94.57  Aligned_cols=55  Identities=29%  Similarity=0.338  Sum_probs=43.6

Q ss_pred             EeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEe-------------------------CCcEEEEeCCCc
Q 021210          220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-------------------------GKDLEFLDSPGI  272 (316)
Q Consensus       220 i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~-------------------------~~~~~liDTPGi  272 (316)
                      |+++|.||||||||+|+|++.. ..++++|+||++...  ...                         ...+.++||||+
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~-~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl   79 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLAD-VEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL   79 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCC-CcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence            5799999999999999999876 589999999987432  111                         124789999999


Q ss_pred             ccC
Q 021210          273 IPM  275 (316)
Q Consensus       273 ~~~  275 (316)
                      ...
T Consensus        80 v~g   82 (318)
T cd01899          80 VPG   82 (318)
T ss_pred             CCC
Confidence            754

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=98.62  E-value=3.9e-07  Score=91.27  Aligned_cols=122  Identities=20%  Similarity=0.215  Sum_probs=78.0

Q ss_pred             ccccCCcceEEEeccc-c-ccccccchHH------HHHHHHHHHHhhcCeEEEEEeCCCCC------CCCc---HHHHHH
Q 021210           82 DWADLDADLYYWTKSL-R-PVQWYPGHIA------KTEKELKDQLKLMDVVIEVRDARIPL------STTH---PLMDQW  144 (316)
Q Consensus        82 ~~~~~d~~~~~~~~~~-~-~i~~~Pgh~~------~~~r~l~~~i~~aDlIl~VvDar~~~------~~~~---~~i~~~  144 (316)
                      .+.|++...-.+.-.- + .+.+.||...      ....+....++++|++|+|+|+....      ...+   .++..+
T Consensus       190 pfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y  269 (500)
T PRK12296        190 PFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAY  269 (500)
T ss_pred             CcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHh
Confidence            4556665544333221 2 2778898532      12234556789999999999996432      1111   123222


Q ss_pred             ------------hCCCCEEEEEEccCCCChHhHHHH-HHHHHhcCceEEEeccccccchhhhHHHHHHhhhh
Q 021210          145 ------------LGNRKRILVLNREDMISMADRNAW-ATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASD  203 (316)
Q Consensus       145 ------------l~~k~~IlVlNK~DLv~~~~~~~~-~~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l~~~  203 (316)
                                  +..+|.|+|+||+|+.+..+..++ .+.+.+.+..++++||+++.|+++|...+.++...
T Consensus       270 ~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~  341 (500)
T PRK12296        270 APALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEARGWPVFEVSAASREGLRELSFALAELVEE  341 (500)
T ss_pred             hhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence                        236899999999999765443333 33455557789999999999999998877666543

>PRK00093 GTP-binding protein Der; Reviewed

Probab=98.62  E-value=3.9e-07  Score=89.90  Aligned_cols=122  Identities=15%  Similarity=0.108  Sum_probs=82.1

Q ss_pred             hccccCCcceEEEecccc--ccccccchH---------HHHH-HHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--
Q 021210           81 CDWADLDADLYYWTKSLR--PVQWYPGHI---------AKTE-KELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--  146 (316)
Q Consensus        81 e~~~~~d~~~~~~~~~~~--~i~~~Pgh~---------~~~~-r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--  146 (316)
                      ..+.|.|.-...|...-.  .+-++||+.         ..+. ......+..+|++|+|+|+..+.+..+..+..++.  
T Consensus       204 ~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~  283 (435)
T PRK00093        204 IAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEA  283 (435)
T ss_pred             CCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc
Confidence            344455543333332222  266788852         2211 23345789999999999999988777766666553  


Q ss_pred             CCCEEEEEEccCCCChHhHHHHHHHHHhc-----CceEEEeccccccchhhhHHHHHHhhh
Q 021210          147 NRKRILVLNREDMISMADRNAWATYFAKQ-----GTKVIFSNGQLGMGTMKLSRLAKALAS  202 (316)
Q Consensus       147 ~k~~IlVlNK~DLv~~~~~~~~~~~~~~~-----g~~vi~iSa~~g~gi~~L~~~L~~l~~  202 (316)
                      ++|+++|+||+|+.+....+++.+.+...     ..+++++||++|.|++++.+.+.....
T Consensus       284 ~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~  344 (435)
T PRK00093        284 GRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYE  344 (435)
T ss_pred             CCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            68999999999998665544444444321     257899999999999999887766543

>cd04171 SelB SelB subfamily

Probab=98.61  E-value=5.4e-08  Score=81.70  Aligned_cols=55  Identities=31%  Similarity=0.434  Sum_probs=40.0

Q ss_pred             EEeEeccCCCCcchhHHhhhcCccccc--CCCCCceeeEEEE--Ee--CCcEEEEeCCCcc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPA--APRPGVTRVLKWV--RF--GKDLEFLDSPGII  273 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~v--s~~pgtT~~~~~~--~~--~~~~~liDTPGi~  273 (316)
                      .|+++|.+|||||||+|+|.+......  ...+++|.+....  ..  +..+.++||||..
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~   62 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHE   62 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChH
Confidence            589999999999999999997542222  2346788775432  22  3468899999974

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd04157 Arl6 Arl6 subfamily

Probab=98.61  E-value=2.4e-07  Score=77.75  Aligned_cols=97  Identities=14%  Similarity=0.070  Sum_probs=63.9

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-------CCCCEEEEEEccCCCChHhHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-------GNRKRILVLNREDMISMADRNAWAT  170 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l-------~~k~~IlVlNK~DLv~~~~~~~~~~  170 (316)
                      +-++||+ .++.......+..+|.+|+|+|+.++.+..  ...+..++       .+.|+++|+||+|+.+.....++.+
T Consensus        49 l~Dt~G~-~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~  127 (162)
T cd04157          49 AFDMSGQ-GKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQ  127 (162)
T ss_pred             EEECCCC-HhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHH
Confidence            5567898 455555567789999999999998764321  11222221       2579999999999975433223322


Q ss_pred             HHH--h---cCceEEEeccccccchhhhHHHH
Q 021210          171 YFA--K---QGTKVIFSNGQLGMGTMKLSRLA  197 (316)
Q Consensus       171 ~~~--~---~g~~vi~iSa~~g~gi~~L~~~L  197 (316)
                      .+.  .   ....++.+||++|.|++++.+.|
T Consensus       128 ~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l  159 (162)
T cd04157         128 LLGLENIKDKPWHIFASNALTGEGLDEGVQWL  159 (162)
T ss_pred             HhCCccccCceEEEEEeeCCCCCchHHHHHHH
Confidence            221  1   11347889999999999987765

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=98.61  E-value=2.8e-07  Score=76.92  Aligned_cols=80  Identities=18%  Similarity=0.103  Sum_probs=56.4

Q ss_pred             hhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCEEEEEEccCCCChHhHHHHHHHH-HhcCceEEEeccccccchhhhHH
Q 021210          119 KLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATYF-AKQGTKVIFSNGQLGMGTMKLSR  195 (316)
Q Consensus       119 ~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~IlVlNK~DLv~~~~~~~~~~~~-~~~g~~vi~iSa~~g~gi~~L~~  195 (316)
                      ..+|++++|+|+..+..  ...+...+  .++|+++|+||+|+.+......+.+.+ ...+.+++++|+.+|.|++++.+
T Consensus        73 ~~~d~vi~v~d~~~~~~--~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~  150 (158)
T cd01879          73 EKPDLIVNVVDATNLER--NLYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKD  150 (158)
T ss_pred             CCCcEEEEEeeCCcchh--HHHHHHHHHHcCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHH
Confidence            58999999999987432  22222222  378999999999997654333333333 33467899999999999999887


Q ss_pred             HHHHh
Q 021210          196 LAKAL  200 (316)
Q Consensus       196 ~L~~l  200 (316)
                      .+..+
T Consensus       151 ~l~~~  155 (158)
T cd01879         151 AIAEL  155 (158)
T ss_pred             HHHHH
Confidence            76654

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=98.60  E-value=8.8e-08  Score=78.56  Aligned_cols=55  Identities=38%  Similarity=0.562  Sum_probs=44.5

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEeC---CcEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG---KDLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~~---~~~~liDTPGi~  273 (316)
                      +||+++|.+|+|||||+|+|.+.. ...+..+++|++...  +..+   ..+.++||||..
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~   61 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQE   61 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcc
Confidence            579999999999999999999887 677778888888654  3333   346789999954

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd04163 Era Era subfamily

Probab=98.60  E-value=5.9e-07  Score=74.72  Aligned_cols=88  Identities=23%  Similarity=0.229  Sum_probs=67.8

Q ss_pred             HHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCC-ChHhHHHHHHHHHhcC--ceEEEecccc
Q 021210          112 KELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMI-SMADRNAWATYFAKQG--TKVIFSNGQL  186 (316)
Q Consensus       112 r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv-~~~~~~~~~~~~~~~g--~~vi~iSa~~  186 (316)
                      +.....+..+|++++|+|+..+.......+...+.  +.|.++|+||+|+. ...+..++.+.+....  .+++.+|+++
T Consensus        74 ~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  153 (168)
T cd04163          74 KAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALK  153 (168)
T ss_pred             HHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEecc
Confidence            34456789999999999999886655556655554  47999999999998 4555566666666544  5789999999


Q ss_pred             ccchhhhHHHHHH
Q 021210          187 GMGTMKLSRLAKA  199 (316)
Q Consensus       187 g~gi~~L~~~L~~  199 (316)
                      +.|++++.+.+.+
T Consensus       154 ~~~~~~l~~~l~~  166 (168)
T cd04163         154 GENVDELLEEIVK  166 (168)
T ss_pred             CCChHHHHHHHHh
Confidence            9999998887654

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.59  E-value=9.6e-08  Score=86.47  Aligned_cols=60  Identities=18%  Similarity=0.159  Sum_probs=45.2

Q ss_pred             EEeEeccCCCCcchhHHhhhcC--cccccCCCCCceeeEEEEEe------CCcEEEEeCCCcccCCCC
Q 021210          219 RAGIVGYPNVGKSSLINRLLKR--RMCPAAPRPGVTRVLKWVRF------GKDLEFLDSPGIIPMRIS  278 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~--~~~~vs~~pgtT~~~~~~~~------~~~~~liDTPGi~~~~~~  278 (316)
                      -|+++|.+++|||||+|.|++.  ........+.||+.+.....      +..+.++||||+......
T Consensus         9 vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~   76 (224)
T cd01851           9 VVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERG   76 (224)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccC
Confidence            5899999999999999999988  43334445789998643221      256899999999866443

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>COG3596 Predicted GTPase [General function prediction only]

Probab=98.59  E-value=2.6e-08  Score=91.53  Aligned_cols=63  Identities=27%  Similarity=0.310  Sum_probs=48.4

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee----EEEEEeCCcEEEEeCCCcccCCCCC
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV----LKWVRFGKDLEFLDSPGIIPMRISD  279 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~----~~~~~~~~~~~liDTPGi~~~~~~~  279 (316)
                      .+++|.++|.+|+|||||||+|+......++..+-+|+.    .+.+. ++.+.|.||||+-+.+-.|
T Consensus        38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~-~~~l~lwDtPG~gdg~~~D  104 (296)
T COG3596          38 EPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYD-GENLVLWDTPGLGDGKDKD  104 (296)
T ss_pred             CceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhcc-ccceEEecCCCcccchhhh
Confidence            478899999999999999999998777777766544433    22222 5789999999998765555

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=98.59  E-value=2.2e-07  Score=88.99  Aligned_cols=103  Identities=20%  Similarity=0.243  Sum_probs=69.4

Q ss_pred             cccccchHH------HHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-HHHHH-------hCCCCEEEEEEccCCCChHhH
Q 021210          100 VQWYPGHIA------KTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQW-------LGNRKRILVLNREDMISMADR  165 (316)
Q Consensus       100 i~~~Pgh~~------~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-~i~~~-------l~~k~~IlVlNK~DLv~~~~~  165 (316)
                      +.+.||...      ....+..+.++++|++|+|+|+.+..+..+. .+...       +.++|+++|+||+|+.+..+.
T Consensus       210 i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~  289 (335)
T PRK12299        210 IADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEE  289 (335)
T ss_pred             EEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhH
Confidence            778898642      2344566778999999999999865321111 12111       136899999999999865432


Q ss_pred             H-H-HHHHHHhcCceEEEeccccccchhhhHHHHHHhhh
Q 021210          166 N-A-WATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALAS  202 (316)
Q Consensus       166 ~-~-~~~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l~~  202 (316)
                      . + ...++...+..++++||+++.|+++|.+.+.+...
T Consensus       290 ~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~l~  328 (335)
T PRK12299        290 REKRAALELAALGGPVFLISAVTGEGLDELLRALWELLE  328 (335)
T ss_pred             HHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            2 1 22223344567899999999999999888766543

>cd04124 RabL2 RabL2 subfamily

Probab=98.59  E-value=3.1e-07  Score=77.92  Aligned_cols=98  Identities=14%  Similarity=0.053  Sum_probs=66.8

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-HHHHHh----CCCCEEEEEEccCCCChHhHHHHHHHHHh
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQWL----GNRKRILVLNREDMISMADRNAWATYFAK  174 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-~i~~~l----~~k~~IlVlNK~DLv~~~~~~~~~~~~~~  174 (316)
                      +-++||+ .++.......+..+|++|+|+|+.++.+..+. .+...+    .+.|+++|.||+|+.... ..+..++...
T Consensus        53 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~  130 (161)
T cd04124          53 FWDTAGQ-ERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSV-TQKKFNFAEK  130 (161)
T ss_pred             EEeCCCc-hhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhH-HHHHHHHHHH
Confidence            3356887 55666666789999999999998776543221 121212    267999999999985432 2223333334


Q ss_pred             cCceEEEeccccccchhhhHHHHHH
Q 021210          175 QGTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       175 ~g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      .+.+++.+||++|.|++++.+.+.+
T Consensus       131 ~~~~~~~~Sa~~~~gv~~l~~~l~~  155 (161)
T cd04124         131 HNLPLYYVSAADGTNVVKLFQDAIK  155 (161)
T ss_pred             cCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            4577899999999999998876654

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=98.58  E-value=1.2e-07  Score=94.09  Aligned_cols=132  Identities=18%  Similarity=0.112  Sum_probs=95.6

Q ss_pred             CCCCCCCcchhhhhhccccCCcceE-EEecc----ccccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-H
Q 021210           67 SNNSNGSIEAYEEECDWADLDADLY-YWTKS----LRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L  140 (316)
Q Consensus        67 ~~~~~~~~g~~~e~e~~~~~d~~~~-~~~~~----~~~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-~  140 (316)
                      ..-..+.|-++-|||.++|+....- +|...    +-.+.++||| ..+.-+....++-+|-+|+||||..++...-. .
T Consensus        91 ~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH-vDFs~EVsRslaac~G~lLvVDA~qGvqAQT~an  169 (650)
T KOG0462|consen   91 IGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH-VDFSGEVSRSLAACDGALLVVDASQGVQAQTVAN  169 (650)
T ss_pred             CchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc-ccccceehehhhhcCceEEEEEcCcCchHHHHHH
Confidence            3356778999999999999887665 44444    2248899999 88888899999999999999999987643221 1


Q ss_pred             HHHHh-CCCCEEEEEEccCCCCh--HhHHH-HHHHHHhcCceEEEeccccccchhhhHHHHHH
Q 021210          141 MDQWL-GNRKRILVLNREDMISM--ADRNA-WATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       141 i~~~l-~~k~~IlVlNK~DLv~~--~~~~~-~~~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      +...+ .+-.+|.|+||+|+-..  +.+.. ..+.|.....+++.+||+.|.|+++|.+.+-+
T Consensus       170 f~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~  232 (650)
T KOG0462|consen  170 FYLAFEAGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIR  232 (650)
T ss_pred             HHHHHHcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHh
Confidence            12222 36788999999999633  33222 23334334467999999999999998776544

>cd04154 Arl2 Arl2 subfamily

Probab=98.58  E-value=1.9e-07  Score=80.09  Aligned_cols=97  Identities=11%  Similarity=0.110  Sum_probs=64.9

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF  172 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~  172 (316)
                      +-++||+ .++.......+..+|++++|+|+.++.+..  ...+..++     .+.|+++|+||+|+......++..+.+
T Consensus        62 l~D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~  140 (173)
T cd04154          62 IWDVGGQ-KTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREAL  140 (173)
T ss_pred             EEECCCC-HHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHh
Confidence            4567888 444445556789999999999998753221  12233322     367999999999997543323333333


Q ss_pred             H-----hcCceEEEeccccccchhhhHHHH
Q 021210          173 A-----KQGTKVIFSNGQLGMGTMKLSRLA  197 (316)
Q Consensus       173 ~-----~~g~~vi~iSa~~g~gi~~L~~~L  197 (316)
                      .     ..+.+++.+||++|.|++++.+.+
T Consensus       141 ~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l  170 (173)
T cd04154         141 ELDKISSHHWRIQPCSAVTGEGLLQGIDWL  170 (173)
T ss_pred             CccccCCCceEEEeccCCCCcCHHHHHHHH
Confidence            2     223578999999999999887664

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.57  E-value=4.1e-08  Score=92.38  Aligned_cols=59  Identities=36%  Similarity=0.416  Sum_probs=47.8

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe--------------------CCcEEEEeCCCcccC
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF--------------------GKDLEFLDSPGIIPM  275 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~--------------------~~~~~liDTPGi~~~  275 (316)
                      ..++++|||.|||||||++|+|++... .++++|+||.+...-++                    ...+.++|.+|+.+.
T Consensus        19 ~~lkiGIVGlPNvGKST~fnalT~~~a-~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG   97 (391)
T KOG1491|consen   19 NNLKIGIVGLPNVGKSTFFNALTKSKA-GAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG   97 (391)
T ss_pred             CcceeeEeeCCCCchHHHHHHHhcCCC-CccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence            456899999999999999999998875 49999999998532221                    124789999999864

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.54  E-value=4.8e-08  Score=91.27  Aligned_cols=58  Identities=31%  Similarity=0.360  Sum_probs=47.7

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEE----EeCCcEEEEeCCCcccCC
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV----RFGKDLEFLDSPGIIPMR  276 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~----~~~~~~~liDTPGi~~~~  276 (316)
                      ..|++||+||+|||||+|+|.+.+. +++++++||.....-    .....+.+-|-|||+...
T Consensus       197 advGLVG~PNAGKSTLL~als~AKp-kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GA  258 (366)
T KOG1489|consen  197 ADVGLVGFPNAGKSTLLNALSRAKP-KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGA  258 (366)
T ss_pred             cccceecCCCCcHHHHHHHhhccCC-cccccceeeeccccceeeccccceeEeccCccccccc
Confidence            4589999999999999999998885 999999999885432    223458999999998653

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=98.54  E-value=3.3e-07  Score=89.79  Aligned_cols=90  Identities=24%  Similarity=0.297  Sum_probs=71.8

Q ss_pred             HHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-CCCCEEEEEEccCCCChHhHHHHHHHHHhcCceEEEecccccc
Q 021210          110 TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGM  188 (316)
Q Consensus       110 ~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l-~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~~vi~iSa~~g~  188 (316)
                      ..++.++.+++||+||+|+|++.+.+..+..+...+ .++|+++|+||+||.+....... +  ...+..++.+|+++|+
T Consensus       286 GIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~~~~~~~i~v~NK~DL~~~~~~~~~-~--~~~~~~~i~iSa~t~~  362 (454)
T COG0486         286 GIERAKKAIEEADLVLFVLDASQPLDKEDLALIELLPKKKPIIVVLNKADLVSKIELESE-K--LANGDAIISISAKTGE  362 (454)
T ss_pred             HHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHHhcccCCCEEEEEechhcccccccchh-h--ccCCCceEEEEecCcc
Confidence            566778889999999999999998888888777733 47899999999999987653322 1  1123468999999999


Q ss_pred             chhhhHHHHHHhhh
Q 021210          189 GTMKLSRLAKALAS  202 (316)
Q Consensus       189 gi~~L~~~L~~l~~  202 (316)
                      |++.|++.+..+..
T Consensus       363 Gl~~L~~~i~~~~~  376 (454)
T COG0486         363 GLDALREAIKQLFG  376 (454)
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999998887754

>cd04151 Arl1 Arl1 subfamily

Probab=98.53  E-value=3e-07  Score=77.49  Aligned_cols=98  Identities=12%  Similarity=0.029  Sum_probs=63.9

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF  172 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~  172 (316)
                      +-++||+ .++.......++.+|++|+|+|+.++.+..  ...+..++     .++|+++|+||+|+.+.....+..+.+
T Consensus        47 i~Dt~G~-~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~  125 (158)
T cd04151          47 VWDLGGQ-TSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKL  125 (158)
T ss_pred             EEECCCC-HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHh
Confidence            5567888 344444456689999999999987643211  12233222     267999999999997533222332222


Q ss_pred             H-----hcCceEEEeccccccchhhhHHHHH
Q 021210          173 A-----KQGTKVIFSNGQLGMGTMKLSRLAK  198 (316)
Q Consensus       173 ~-----~~g~~vi~iSa~~g~gi~~L~~~L~  198 (316)
                      .     ..+.+++++||++|.|++++.+.+.
T Consensus       126 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  156 (158)
T cd04151         126 GLSELKDRTWSIFKTSAIKGEGLDEGMDWLV  156 (158)
T ss_pred             CccccCCCcEEEEEeeccCCCCHHHHHHHHh
Confidence            1     1124689999999999999877653

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=98.53  E-value=2.9e-07  Score=77.33  Aligned_cols=98  Identities=17%  Similarity=0.100  Sum_probs=63.6

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC--CcHHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST--THPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF  172 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~--~~~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~  172 (316)
                      +-++||+ .++.......+..+|++++|+|++++.+.  ....+...+     .+.|+++|+||+|+......++....+
T Consensus        48 i~D~~G~-~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~  126 (160)
T cd04156          48 VWDVGGQ-EKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRF  126 (160)
T ss_pred             EEECCCC-HhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHc
Confidence            3446776 44555555678999999999999876422  122233332     367999999999986432222222222


Q ss_pred             H------hcCceEEEeccccccchhhhHHHHH
Q 021210          173 A------KQGTKVIFSNGQLGMGTMKLSRLAK  198 (316)
Q Consensus       173 ~------~~g~~vi~iSa~~g~gi~~L~~~L~  198 (316)
                      .      +.+.+++++||++|.|++++.+.|.
T Consensus       127 ~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~  158 (160)
T cd04156         127 KLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLA  158 (160)
T ss_pred             CCcccCCCCcEEEEecccccCCChHHHHHHHh
Confidence            1      1224578899999999999877654

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=98.52  E-value=5e-08  Score=86.97  Aligned_cols=55  Identities=29%  Similarity=0.347  Sum_probs=40.6

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccC------------------------------CCCCceeeEEEEEe---CCcEE
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAA------------------------------PRPGVTRVLKWVRF---GKDLE  265 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs------------------------------~~pgtT~~~~~~~~---~~~~~  265 (316)
                      +|+++|.+|+|||||+|+|+......++                              ...|+|++.....+   +..+.
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~   80 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI   80 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence            4899999999999999999865433221                              12688988643333   55789


Q ss_pred             EEeCCCcc
Q 021210          266 FLDSPGII  273 (316)
Q Consensus       266 liDTPGi~  273 (316)
                      |+||||..
T Consensus        81 liDTpG~~   88 (208)
T cd04166          81 IADTPGHE   88 (208)
T ss_pred             EEECCcHH
Confidence            99999974

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=98.52  E-value=7.2e-08  Score=90.99  Aligned_cols=56  Identities=36%  Similarity=0.510  Sum_probs=47.3

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEe--CCcEEEEeCCCcccC
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF--GKDLEFLDSPGIIPM  275 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~--~~~~~liDTPGi~~~  275 (316)
                      .|++||+||+|||||||++...+ .+++++|+||....  .++.  .+.+.+-|-||++..
T Consensus       161 DVGLVG~PNaGKSTlls~vS~Ak-PKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEG  220 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAK-PKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEG  220 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcC-CcccCCccccccCcccEEEecCCCcEEEecCcccccc
Confidence            48999999999999999999776 69999999999853  3333  456999999999865

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=98.52  E-value=1.5e-07  Score=83.18  Aligned_cols=59  Identities=22%  Similarity=0.149  Sum_probs=40.6

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccC----CCCCceeeEEEEEe--CCcEEEEeCCCcccC
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAA----PRPGVTRVLKWVRF--GKDLEFLDSPGIIPM  275 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs----~~pgtT~~~~~~~~--~~~~~liDTPGi~~~  275 (316)
                      +++|+++|.+|||||||+|+|++......+    ....+|+....+..  ..++.++||||+...
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~   65 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGST   65 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcc
Confidence            368999999999999999999985432211    12234555444432  246899999999754

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=98.51  E-value=7e-07  Score=88.86  Aligned_cols=115  Identities=22%  Similarity=0.175  Sum_probs=75.8

Q ss_pred             hccccCCcceEEEecccc--ccccccchHH-----H--HHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCEE
Q 021210           81 CDWADLDADLYYWTKSLR--PVQWYPGHIA-----K--TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRI  151 (316)
Q Consensus        81 e~~~~~d~~~~~~~~~~~--~i~~~Pgh~~-----~--~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~I  151 (316)
                      ..+.|.|.....+.-.-.  .+.++||+..     +  ..+.....+..+|++++|+|+.++.+..+..+.....++|++
T Consensus       246 ~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~~~~~pii  325 (449)
T PRK05291        246 IAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEELKDKPVI  325 (449)
T ss_pred             CCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHhcCCCCcE
Confidence            344555554433322212  2566777621     1  124456678999999999999887655444333334578999


Q ss_pred             EEEEccCCCChHhHHHHHHHHHhcCceEEEeccccccchhhhHHHHHHhh
Q 021210          152 LVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (316)
Q Consensus       152 lVlNK~DLv~~~~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l~  201 (316)
                      +|+||+|+.+.....      ...+..++++||++|.|+++|.+.+.+..
T Consensus       326 iV~NK~DL~~~~~~~------~~~~~~~i~iSAktg~GI~~L~~~L~~~l  369 (449)
T PRK05291        326 VVLNKADLTGEIDLE------EENGKPVIRISAKTGEGIDELREAIKELA  369 (449)
T ss_pred             EEEEhhhccccchhh------hccCCceEEEEeeCCCCHHHHHHHHHHHH
Confidence            999999997654322      22345689999999999999988876654

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.50  E-value=5.1e-07  Score=84.66  Aligned_cols=101  Identities=19%  Similarity=0.179  Sum_probs=79.8

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCC----CCCCcHHHHHHhCCCCEEEEEEccCCCChHhHHHH----HHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIP----LSTTHPLMDQWLGNRKRILVLNREDMISMADRNAW----ATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~----~~~~~~~i~~~l~~k~~IlVlNK~DLv~~~~~~~~----~~~  171 (316)
                      +-+.||| +-.+..|...++-.|-+|+|++|..+    .+.+|....+.++.+++|+|=||+||+++++..+-    .++
T Consensus        90 fVDaPGH-e~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~E~AlE~y~qIk~F  168 (415)
T COG5257          90 FVDAPGH-ETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSRERALENYEQIKEF  168 (415)
T ss_pred             EeeCCch-HHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceecHHHHHHHHHHHHHH
Confidence            5688999 66788888899999999999999754    46667777777889999999999999988753332    222


Q ss_pred             HHh---cCceEEEeccccccchhhhHHHHHHhh
Q 021210          172 FAK---QGTKVIFSNGQLGMGTMKLSRLAKALA  201 (316)
Q Consensus       172 ~~~---~g~~vi~iSa~~g~gi~~L~~~L~~l~  201 (316)
                      .+.   .+.+++++||.++.|++.|.+++.+.-
T Consensus       169 vkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~I  201 (415)
T COG5257         169 VKGTVAENAPIIPISAQHKANIDALIEAIEKYI  201 (415)
T ss_pred             hcccccCCCceeeehhhhccCHHHHHHHHHHhC
Confidence            221   235799999999999999999887764

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=98.50  E-value=6e-07  Score=75.51  Aligned_cols=98  Identities=12%  Similarity=-0.055  Sum_probs=66.1

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHh--CCCCEEEEEEccCCCChHh--HHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL--GNRKRILVLNREDMISMAD--RNAWAT  170 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l--~~k~~IlVlNK~DLv~~~~--~~~~~~  170 (316)
                      +-++||+ .++.......+..+|.+++|+|+.++.+....     .+.+..  .+.|+++|.||+|+.+...  .+...+
T Consensus        54 i~Dt~G~-~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~  132 (164)
T cd04145          54 ILDTAGQ-EEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQE  132 (164)
T ss_pred             EEECCCC-cchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHH
Confidence            4567887 55666666778999999999999875432111     111111  2569999999999965421  122233


Q ss_pred             HHHhcCceEEEeccccccchhhhHHHHH
Q 021210          171 YFAKQGTKVIFSNGQLGMGTMKLSRLAK  198 (316)
Q Consensus       171 ~~~~~g~~vi~iSa~~g~gi~~L~~~L~  198 (316)
                      .....+..++.+||++|.|++++.+.+.
T Consensus       133 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  160 (164)
T cd04145         133 LARKLKIPYIETSAKDRLNVDKAFHDLV  160 (164)
T ss_pred             HHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence            3444567889999999999999877654

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04149 Arf6 Arf6 subfamily

Probab=98.49  E-value=4.4e-07  Score=77.95  Aligned_cols=97  Identities=12%  Similarity=0.003  Sum_probs=62.6

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF  172 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~  172 (316)
                      +-++||+ .++.......+..+|++|+|+|+.++.+..  ...+.+.+     .+.|+++|.||+|+......++..+++
T Consensus        57 l~Dt~G~-~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~  135 (168)
T cd04149          57 VWDVGGQ-DKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKL  135 (168)
T ss_pred             EEECCCC-HHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHc
Confidence            4457888 555555556789999999999998753221  12232333     247999999999986432222222222


Q ss_pred             -----HhcCceEEEeccccccchhhhHHHH
Q 021210          173 -----AKQGTKVIFSNGQLGMGTMKLSRLA  197 (316)
Q Consensus       173 -----~~~g~~vi~iSa~~g~gi~~L~~~L  197 (316)
                           ......++++||++|.|++++.+.|
T Consensus       136 ~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l  165 (168)
T cd04149         136 GLTRIRDRNWYVQPSCATSGDGLYEGLTWL  165 (168)
T ss_pred             CCCccCCCcEEEEEeeCCCCCChHHHHHHH
Confidence                 1112357889999999998877665

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd01862 Rab7 Rab7 subfamily

Probab=98.49  E-value=7.7e-07  Score=75.45  Aligned_cols=100  Identities=10%  Similarity=-0.017  Sum_probs=66.8

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHhC-----CCCEEEEEEccCCCChH--hHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG-----NRKRILVLNREDMISMA--DRNA  167 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l~-----~k~~IlVlNK~DLv~~~--~~~~  167 (316)
                      +-++||+ ..+.......++.+|.+|+|+|+.++.+..+.     .+.....     +.|+++|+||+|+....  ..+.
T Consensus        53 ~~D~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~  131 (172)
T cd01862          53 IWDTAGQ-ERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKK  131 (172)
T ss_pred             EEeCCCh-HHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHH
Confidence            3467887 44555555778999999999999876532211     1122222     57999999999998321  1222


Q ss_pred             HHHHHHhcC-ceEEEeccccccchhhhHHHHHHh
Q 021210          168 WATYFAKQG-TKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       168 ~~~~~~~~g-~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      ...+....+ ..++.+|+++|.|++++.+.+.+.
T Consensus       132 ~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~  165 (172)
T cd01862         132 AQQWCQSNGNIPYFETSAKEAINVEQAFETIARK  165 (172)
T ss_pred             HHHHHHHcCCceEEEEECCCCCCHHHHHHHHHHH
Confidence            223334444 678999999999999988776654

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=98.49  E-value=1.6e-07  Score=79.42  Aligned_cols=54  Identities=22%  Similarity=0.423  Sum_probs=40.4

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe------CCcEEEEeCCCcc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF------GKDLEFLDSPGII  273 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~------~~~~~liDTPGi~  273 (316)
                      .|+++|.+|+|||||+|+|.+... .....+++|.+......      +..+.++||||..
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~   61 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNV-AAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHE   61 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhccc-ccccCCCeEEeeccEEEecccCCcceEEEEeCCCcH
Confidence            389999999999999999997653 34455677877543222      3468899999974

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd01878 HflX HflX subfamily

Probab=98.49  E-value=1.9e-06  Score=75.99  Aligned_cols=97  Identities=20%  Similarity=0.259  Sum_probs=65.2

Q ss_pred             cccccchHH-------HHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-HHHHH---hC--CCCEEEEEEccCCCChHhHH
Q 021210          100 VQWYPGHIA-------KTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQW---LG--NRKRILVLNREDMISMADRN  166 (316)
Q Consensus       100 i~~~Pgh~~-------~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-~i~~~---l~--~k~~IlVlNK~DLv~~~~~~  166 (316)
                      +-++||+..       +..+.+...+..+|++++|+|++++....+. .+..+   +.  ++|+++|+||+|+.+.....
T Consensus        93 i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~  172 (204)
T cd01878          93 LTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE  172 (204)
T ss_pred             EeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH
Confidence            445677622       2233344557789999999999987654432 12222   22  57999999999998765433


Q ss_pred             HHHHHHHhcCceEEEeccccccchhhhHHHHHH
Q 021210          167 AWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       167 ~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                         ..+...+.+++++||++|.|++++.+.|..
T Consensus       173 ---~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~~  202 (204)
T cd01878         173 ---ERLEAGRPDAVFISAKTGEGLDELLEAIEE  202 (204)
T ss_pred             ---HHhhcCCCceEEEEcCCCCCHHHHHHHHHh
Confidence               223334467899999999999998776543

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=98.49  E-value=7.9e-07  Score=75.30  Aligned_cols=80  Identities=18%  Similarity=0.137  Sum_probs=53.7

Q ss_pred             hcCeEEEEEeCCCCCCC-CcH--HHHHHh----CCCCEEEEEEccCCCChHhHHHHHHHHHhcCceEEEeccccccchhh
Q 021210          120 LMDVVIEVRDARIPLST-THP--LMDQWL----GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMK  192 (316)
Q Consensus       120 ~aDlIl~VvDar~~~~~-~~~--~i~~~l----~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~~vi~iSa~~g~gi~~  192 (316)
                      .+|++|+|+|+.+..+. .+.  .+...+    .+.|+++|+||+|+.+..+..+..++....+..++++||++|.|+++
T Consensus        79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  158 (168)
T cd01897          79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTEEGVDE  158 (168)
T ss_pred             ccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHHHHHhhhhccCceEEEEecccCCHHH
Confidence            46899999999875432 111  122222    26899999999999876554432222222346789999999999999


Q ss_pred             hHHHHHH
Q 021210          193 LSRLAKA  199 (316)
Q Consensus       193 L~~~L~~  199 (316)
                      +.+.+.+
T Consensus       159 l~~~l~~  165 (168)
T cd01897         159 VKNKACE  165 (168)
T ss_pred             HHHHHHH
Confidence            8876544

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=98.48  E-value=9.6e-07  Score=86.31  Aligned_cols=122  Identities=18%  Similarity=0.196  Sum_probs=78.7

Q ss_pred             ccccCCcceEEEecc-cc--ccccccchHHH------HHHHHHHHHhhcCeEEEEEeCCCCC--CC-C-cHHHHHHh---
Q 021210           82 DWADLDADLYYWTKS-LR--PVQWYPGHIAK------TEKELKDQLKLMDVVIEVRDARIPL--ST-T-HPLMDQWL---  145 (316)
Q Consensus        82 ~~~~~d~~~~~~~~~-~~--~i~~~Pgh~~~------~~r~l~~~i~~aDlIl~VvDar~~~--~~-~-~~~i~~~l---  145 (316)
                      .+.|++...-++... .+  .+.++||....      ...++.+.++++|++++|+|+....  .. . ...+.+.+   
T Consensus       190 p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~  269 (390)
T PRK12298        190 PFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKY  269 (390)
T ss_pred             CCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhh
Confidence            455666655554433 12  26788987432      3445667899999999999987221  11 1 11222221   


Q ss_pred             ----CCCCEEEEEEccCCCChHhHHHHHHHHHh-cC--ceEEEeccccccchhhhHHHHHHhhhh
Q 021210          146 ----GNRKRILVLNREDMISMADRNAWATYFAK-QG--TKVIFSNGQLGMGTMKLSRLAKALASD  203 (316)
Q Consensus       146 ----~~k~~IlVlNK~DLv~~~~~~~~~~~~~~-~g--~~vi~iSa~~g~gi~~L~~~L~~l~~~  203 (316)
                          ..+|.++|+||+|+.+..+..+..+.+.+ .+  ..++++||+++.|+++|.+.+.++...
T Consensus       270 ~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~  334 (390)
T PRK12298        270 SPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEE  334 (390)
T ss_pred             hhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhh
Confidence                25899999999999876655444444433 23  368999999999999998887766543

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=98.48  E-value=5.5e-07  Score=76.49  Aligned_cols=98  Identities=11%  Similarity=0.042  Sum_probs=62.2

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC--CcHHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST--THPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF  172 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~--~~~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~  172 (316)
                      +-++||+ .++.......++.+|++|+|+|+.+..+.  ....+..++     .+.|++++.||+|+.+....++..+.+
T Consensus        48 l~D~~G~-~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~  126 (159)
T cd04150          48 VWDVGGQ-DKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKL  126 (159)
T ss_pred             EEECCCC-HhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHh
Confidence            3446887 45555556778999999999999764321  112233332     247999999999996432222222222


Q ss_pred             H-----hcCceEEEeccccccchhhhHHHHH
Q 021210          173 A-----KQGTKVIFSNGQLGMGTMKLSRLAK  198 (316)
Q Consensus       173 ~-----~~g~~vi~iSa~~g~gi~~L~~~L~  198 (316)
                      .     ..+..++.+||++|.|++++.+.|.
T Consensus       127 ~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~  157 (159)
T cd04150         127 GLHSLRNRNWYIQATCATSGDGLYEGLDWLS  157 (159)
T ss_pred             CccccCCCCEEEEEeeCCCCCCHHHHHHHHh
Confidence            1     1123466899999999998876653

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=98.48  E-value=1.5e-07  Score=88.31  Aligned_cols=66  Identities=29%  Similarity=0.252  Sum_probs=46.7

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE----EEEeCCcEEEEeCCCcccCCCCCHHHHHH
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK----WVRFGKDLEFLDSPGIIPMRISDQAAAIK  285 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~----~~~~~~~~~liDTPGi~~~~~~~~~~~~~  285 (316)
                      -|++|||+|+|||||||+|++.. ....+.-+-|.|..    ...-+..+.+.||-||++..+.....++.
T Consensus       180 viavVGYTNaGKsTLikaLT~Aa-l~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~  249 (410)
T KOG0410|consen  180 VIAVVGYTNAGKSTLIKALTKAA-LYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQ  249 (410)
T ss_pred             eEEEEeecCccHHHHHHHHHhhh-cCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHH
Confidence            49999999999999999999433 34445555555532    22335668899999999766555555544

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=98.48  E-value=6.5e-07  Score=77.08  Aligned_cols=97  Identities=11%  Similarity=0.017  Sum_probs=63.4

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF  172 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~  172 (316)
                      +-+.||+ .++.+.....+..+|++++|+|+.++....  ...+..++     .+.|+++++||+|+......++..+.+
T Consensus        63 l~D~~G~-~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l  141 (174)
T cd04153          63 MWDIGGQ-ESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESL  141 (174)
T ss_pred             EEECCCC-HHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHh
Confidence            4457887 445555556789999999999998653221  12233333     247999999999986532222222222


Q ss_pred             H-----hcCceEEEeccccccchhhhHHHH
Q 021210          173 A-----KQGTKVIFSNGQLGMGTMKLSRLA  197 (316)
Q Consensus       173 ~-----~~g~~vi~iSa~~g~gi~~L~~~L  197 (316)
                      .     ..+..++++||++|.|++++.+.|
T Consensus       142 ~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l  171 (174)
T cd04153         142 GLTSIRDHTWHIQGCCALTGEGLPEGLDWI  171 (174)
T ss_pred             CcccccCCceEEEecccCCCCCHHHHHHHH
Confidence            1     223468899999999999887765

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd01861 Rab6 Rab6 subfamily

Probab=98.47  E-value=2.2e-07  Score=78.09  Aligned_cols=54  Identities=19%  Similarity=0.277  Sum_probs=39.9

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEeCC---cEEEEeCCCcc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFGK---DLEFLDSPGII  273 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~~~---~~~liDTPGi~  273 (316)
                      ||+++|.+|||||||+|+|++.+. ..+..|++|.+...  +..+.   .+.++||||-.
T Consensus         2 ki~liG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~   60 (161)
T cd01861           2 KLVFLGDQSVGKTSIITRFMYDTF-DNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQE   60 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCC-CccCCCceeeeEEEEEEEECCEEEEEEEEECCCcH
Confidence            689999999999999999998764 34556777766432  22222   37899999953

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04106 Rab23_lke Rab23-like subfamily

Probab=98.46  E-value=9.2e-07  Score=74.31  Aligned_cols=98  Identities=11%  Similarity=0.003  Sum_probs=67.2

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-H----HHHHhCCCCEEEEEEccCCCChHh--HHHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L----MDQWLGNRKRILVLNREDMISMAD--RNAWATYF  172 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-~----i~~~l~~k~~IlVlNK~DLv~~~~--~~~~~~~~  172 (316)
                      +-++||+ .++.......++.+|.+++|+|+.++.+.... .    +.....+.|+++|.||+|+.+..+  .++..+..
T Consensus        55 i~D~~G~-~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~  133 (162)
T cd04106          55 LWDTAGQ-EEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALA  133 (162)
T ss_pred             EeeCCch-HHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHH
Confidence            3456887 55666666788999999999998765432211 1    111123679999999999975432  12233344


Q ss_pred             HhcCceEEEeccccccchhhhHHHHH
Q 021210          173 AKQGTKVIFSNGQLGMGTMKLSRLAK  198 (316)
Q Consensus       173 ~~~g~~vi~iSa~~g~gi~~L~~~L~  198 (316)
                      ...+.+++.+|+++|.|++++.+.+.
T Consensus       134 ~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (162)
T cd04106         134 KRLQLPLFRTSVKDDFNVTELFEYLA  159 (162)
T ss_pred             HHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            45677889999999999998877654

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>smart00175 RAB Rab subfamily of small GTPases

Probab=98.45  E-value=1e-06  Score=73.98  Aligned_cols=99  Identities=11%  Similarity=-0.000  Sum_probs=68.6

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-HH-HHH---h-CCCCEEEEEEccCCCChHh--HHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LM-DQW---L-GNRKRILVLNREDMISMAD--RNAWATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-~i-~~~---l-~~k~~IlVlNK~DLv~~~~--~~~~~~~  171 (316)
                      +-++||+ .++.......++.+|++++|+|++++.+.... .+ ..+   . .+.|+++|.||+|+....+  .+...+.
T Consensus        53 l~D~~G~-~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~  131 (164)
T smart00175       53 IWDTAGQ-ERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAF  131 (164)
T ss_pred             EEECCCh-HHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHH
Confidence            4567887 55666667788999999999999876543221 11 111   1 2579999999999875321  2223333


Q ss_pred             HHhcCceEEEeccccccchhhhHHHHHH
Q 021210          172 FAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      ....+.+++.+|+++|.|++++.+.+.+
T Consensus       132 ~~~~~~~~~e~Sa~~~~~i~~l~~~i~~  159 (164)
T smart00175      132 AEEHGLPFFETSAKTNTNVEEAFEELAR  159 (164)
T ss_pred             HHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            4455678999999999999998877654

Rab GTPases are implicated in vesicle trafficking.

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=98.45  E-value=1.3e-06  Score=81.36  Aligned_cols=114  Identities=13%  Similarity=0.018  Sum_probs=77.4

Q ss_pred             CCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--C
Q 021210           72 GSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--N  147 (316)
Q Consensus        72 ~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~  147 (316)
                      .+|-...|++.+++++.....|.-.-..  +-++||| .++..++...+..+|++|+|+|+..+.......+.+.+.  +
T Consensus        38 ~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~-~df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~  116 (270)
T cd01886          38 TMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGH-VDFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYN  116 (270)
T ss_pred             ccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCc-HHHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcC
Confidence            3555556888889999877766544333  6789999 567788889999999999999999877555445544433  6


Q ss_pred             CCEEEEEEccCCCChH--h-HHHHHHHHHhcC-ceEEEecccc
Q 021210          148 RKRILVLNREDMISMA--D-RNAWATYFAKQG-TKVIFSNGQL  186 (316)
Q Consensus       148 k~~IlVlNK~DLv~~~--~-~~~~~~~~~~~g-~~vi~iSa~~  186 (316)
                      +|+++++||+|+....  . .++..+.+...- ...+++|+..
T Consensus       117 ~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~~~~~~~Pisa~~  159 (270)
T cd01886         117 VPRIAFVNKMDRTGADFFRVVEQIREKLGANPVPLQLPIGEED  159 (270)
T ss_pred             CCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceEEEeccccCC
Confidence            8999999999987432  2 122222222111 2356787753

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=98.45  E-value=1.2e-06  Score=73.96  Aligned_cols=99  Identities=14%  Similarity=0.046  Sum_probs=65.1

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh----CCCCEEEEEEccCCCChHhHH--HHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLMDQWL----GNRKRILVLNREDMISMADRN--AWATYF  172 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-~~i~~~l----~~k~~IlVlNK~DLv~~~~~~--~~~~~~  172 (316)
                      +-++||+ .++.......++++|++++|+|..++.+..+ ..+...+    .+.|.++|.||+|+.+..+..  ....+.
T Consensus        56 i~Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~  134 (164)
T cd04101          56 IFDSAGQ-ELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFA  134 (164)
T ss_pred             EEECCCH-HHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHH
Confidence            3356776 5555656677899999999999876532211 1111111    257999999999997653221  122223


Q ss_pred             HhcCceEEEeccccccchhhhHHHHHH
Q 021210          173 AKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       173 ~~~g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      ...+..++.+||++|.|++++.+.+.+
T Consensus       135 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~  161 (164)
T cd04101         135 QANQLKFFKTSALRGVGYEEPFESLAR  161 (164)
T ss_pred             HHcCCeEEEEeCCCCCChHHHHHHHHH
Confidence            344567899999999999998876544

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=98.45  E-value=5.1e-07  Score=76.72  Aligned_cols=99  Identities=19%  Similarity=0.212  Sum_probs=64.2

Q ss_pred             cccccchHHH------HHHHHHHHHhhcCeEEEEEeCCCCC-----CCCc------HHHHHH--------hCCCCEEEEE
Q 021210          100 VQWYPGHIAK------TEKELKDQLKLMDVVIEVRDARIPL-----STTH------PLMDQW--------LGNRKRILVL  154 (316)
Q Consensus       100 i~~~Pgh~~~------~~r~l~~~i~~aDlIl~VvDar~~~-----~~~~------~~i~~~--------l~~k~~IlVl  154 (316)
                      +-++||+...      ..+++...+..+|++++|+|+.++.     ...+      ..+...        +.++|+++|+
T Consensus        48 i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~  127 (176)
T cd01881          48 VADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVL  127 (176)
T ss_pred             EEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEE
Confidence            4556776221      1224456678899999999998763     1111      111111        2368999999


Q ss_pred             EccCCCChHhHHHHH--HHHHhcCceEEEeccccccchhhhHHHHH
Q 021210          155 NREDMISMADRNAWA--TYFAKQGTKVIFSNGQLGMGTMKLSRLAK  198 (316)
Q Consensus       155 NK~DLv~~~~~~~~~--~~~~~~g~~vi~iSa~~g~gi~~L~~~L~  198 (316)
                      ||+|+.+......+.  ......+..++++|++++.|++++.+.+.
T Consensus       128 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~  173 (176)
T cd01881         128 NKIDLDDAEELEEELVRELALEEGAEVVPISAKTEEGLDELIRAIY  173 (176)
T ss_pred             EchhcCchhHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHH
Confidence            999998766555441  22222346789999999999998877654

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=98.44  E-value=2.4e-06  Score=74.31  Aligned_cols=83  Identities=19%  Similarity=0.234  Sum_probs=59.7

Q ss_pred             hhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChHhHHHHH----HHHHhcCceEEEeccccccchhh
Q 021210          119 KLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWA----TYFAKQGTKVIFSNGQLGMGTMK  192 (316)
Q Consensus       119 ~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~~~~~~----~~~~~~g~~vi~iSa~~g~gi~~  192 (316)
                      +.++++++|+|+..+....+..+.+++.  +.|+++++||+|+.+..+.+...    +.+......++++||+++.|+++
T Consensus       105 ~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~  184 (196)
T PRK00454        105 ENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDE  184 (196)
T ss_pred             ccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHH
Confidence            3457899999998876655545555443  67899999999998765433322    23332246789999999999999


Q ss_pred             hHHHHHHhh
Q 021210          193 LSRLAKALA  201 (316)
Q Consensus       193 L~~~L~~l~  201 (316)
                      +.+.+..+.
T Consensus       185 l~~~i~~~~  193 (196)
T PRK00454        185 LRAAIAKWL  193 (196)
T ss_pred             HHHHHHHHh
Confidence            998887654

>cd00880 Era_like Era (E

Probab=98.44  E-value=1.9e-06  Score=70.53  Aligned_cols=88  Identities=18%  Similarity=0.206  Sum_probs=64.6

Q ss_pred             HHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHH--hCCCCEEEEEEccCCCChHhHHHHHH-----HHHhcCceEEEecc
Q 021210          112 KELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW--LGNRKRILVLNREDMISMADRNAWAT-----YFAKQGTKVIFSNG  184 (316)
Q Consensus       112 r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~--l~~k~~IlVlNK~DLv~~~~~~~~~~-----~~~~~g~~vi~iSa  184 (316)
                      +.+...+..+|++++|+|+..+.......+...  ..+.|.++|+||+|+........+.+     .....+.+++++|+
T Consensus        67 ~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  146 (163)
T cd00880          67 ELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSA  146 (163)
T ss_pred             HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEee
Confidence            456677899999999999998776665542222  24789999999999998766555421     11122367899999


Q ss_pred             ccccchhhhHHHHHH
Q 021210          185 QLGMGTMKLSRLAKA  199 (316)
Q Consensus       185 ~~g~gi~~L~~~L~~  199 (316)
                      +++.|++++.+.+..
T Consensus       147 ~~~~~v~~l~~~l~~  161 (163)
T cd00880         147 LTGEGIDELREALIE  161 (163)
T ss_pred             eccCCHHHHHHHHHh
Confidence            999999998877654

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=98.44  E-value=1.2e-06  Score=89.78  Aligned_cols=146  Identities=16%  Similarity=0.084  Sum_probs=89.7

Q ss_pred             ccCCCCCeeEEecCC-C------CCcCCCCCCCCCCCcchhhhhhccccCCcceEEEecccc---ccccccchHHHHHHH
Q 021210           44 SLSSSAPIIQTVGGK-Q------SSWHGGNSNNSNGSIEAYEEECDWADLDADLYYWTKSLR---PVQWYPGHIAKTEKE  113 (316)
Q Consensus        44 ~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~---~i~~~Pgh~~~~~r~  113 (316)
                      .+...+|.+.|+|.. .      ....+..+     ..    .+..++|.+.....+...-.   .+-++||| .++...
T Consensus        82 ~~~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v-----~~----~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGh-e~F~~~  151 (587)
T TIGR00487        82 LLVERPPVVTIMGHVDHGKTSLLDSIRKTKV-----AQ----GEAGGITQHIGAYHVENEDGKMITFLDTPGH-EAFTSM  151 (587)
T ss_pred             ccccCCCEEEEECCCCCCHHHHHHHHHhCCc-----cc----ccCCceeecceEEEEEECCCcEEEEEECCCC-cchhhH
Confidence            355677899999872 2      12222211     11    12234566655443332211   26789999 566666


Q ss_pred             HHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCEEEEEEccCCCCh--HhHHHHHHHH----HhcC--ceEEEec
Q 021210          114 LKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISM--ADRNAWATYF----AKQG--TKVIFSN  183 (316)
Q Consensus       114 l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~IlVlNK~DLv~~--~~~~~~~~~~----~~~g--~~vi~iS  183 (316)
                      ....+..+|++++|+|+.++......+.....  .+.|+++++||+|+.+.  ++...+...+    ...+  ..++++|
T Consensus       152 r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~~~v~iS  231 (587)
T TIGR00487       152 RARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPVS  231 (587)
T ss_pred             HHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCCceEEEEE
Confidence            66789999999999999887644333333332  36799999999999642  2222222111    0111  3589999


Q ss_pred             cccccchhhhHHHHHH
Q 021210          184 GQLGMGTMKLSRLAKA  199 (316)
Q Consensus       184 a~~g~gi~~L~~~L~~  199 (316)
                      |++|.|+++|.+.+..
T Consensus       232 AktGeGI~eLl~~I~~  247 (587)
T TIGR00487       232 ALTGDGIDELLDMILL  247 (587)
T ss_pred             CCCCCChHHHHHhhhh
Confidence            9999999999887654

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd04159 Arl10_like Arl10-like subfamily

Probab=98.44  E-value=9.6e-07  Score=73.01  Aligned_cols=99  Identities=8%  Similarity=-0.007  Sum_probs=66.9

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF  172 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~  172 (316)
                      +.++||+ .++.+.....+..+|++++|+|+.+.....  ...+..++     .++|+++|+||+|+.+.....+..+.+
T Consensus        48 ~~D~~g~-~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~  126 (159)
T cd04159          48 VWDLGGQ-PRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQM  126 (159)
T ss_pred             EEECCCC-HhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHh
Confidence            5567887 556666677889999999999997643211  11222222     257999999999987654433333332


Q ss_pred             H-----hcCceEEEeccccccchhhhHHHHHH
Q 021210          173 A-----KQGTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       173 ~-----~~g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      .     .....++.+|+++|.|++++.+.+.+
T Consensus       127 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  158 (159)
T cd04159         127 NLKSITDREVSCYSISCKEKTNIDIVLDWLIK  158 (159)
T ss_pred             CcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence            1     11246789999999999998877654

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd04127 Rab27A Rab27a subfamily

Probab=98.43  E-value=1.1e-06  Score=75.36  Aligned_cols=99  Identities=11%  Similarity=-0.004  Sum_probs=66.8

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHh--CCCCEEEEEEccCCCChHh--HHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL--GNRKRILVLNREDMISMAD--RNAWAT  170 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l--~~k~~IlVlNK~DLv~~~~--~~~~~~  170 (316)
                      +-++||+ .++.......++.+|++++|+|+.++.+..+.     .+....  .+.|+++|.||+|+.+...  .++..+
T Consensus        67 i~Dt~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~  145 (180)
T cd04127          67 LWDTAGQ-ERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKA  145 (180)
T ss_pred             EEeCCCh-HHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHH
Confidence            4456887 56666667788999999999999865433221     111111  2568999999999975321  122233


Q ss_pred             HHHhcCceEEEeccccccchhhhHHHHHH
Q 021210          171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       171 ~~~~~g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      +..+.+.+++.+||++|.|++++.+.+.+
T Consensus       146 ~~~~~~~~~~e~Sak~~~~v~~l~~~l~~  174 (180)
T cd04127         146 LADKYGIPYFETSAATGTNVEKAVERLLD  174 (180)
T ss_pred             HHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            34445678899999999999998877654

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>TIGR00092 GTP-binding protein YchF

Probab=98.43  E-value=2.9e-07  Score=88.83  Aligned_cols=58  Identities=34%  Similarity=0.366  Sum_probs=47.0

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEe-C-----------------CcEEEEeCCCcccC
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-G-----------------KDLEFLDSPGIIPM  275 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~-~-----------------~~~~liDTPGi~~~  275 (316)
                      +++++||.||||||||+|+|++.+...++++|+||.+...  +.. +                 ..+.++|.||+...
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~g   80 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGG   80 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccc
Confidence            5799999999999999999998885488999999988532  222 2                 24789999999864

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=98.43  E-value=1.3e-06  Score=75.58  Aligned_cols=72  Identities=19%  Similarity=0.243  Sum_probs=52.9

Q ss_pred             hcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChHhH----HHHHHHHHhcC--ceEEEeccccccchh
Q 021210          120 LMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADR----NAWATYFAKQG--TKVIFSNGQLGMGTM  191 (316)
Q Consensus       120 ~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~~----~~~~~~~~~~g--~~vi~iSa~~g~gi~  191 (316)
                      .+|.+++|+|++.+.+..+..+.+++.  ++|+++|+||+|+.+..+.    +++.+.+...+  .+++++||++|+|++
T Consensus       100 ~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       100 NLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID  179 (179)
T ss_pred             hhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence            468999999999877766665555553  6799999999999865432    33444444433  379999999999974

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=98.42  E-value=1.2e-06  Score=92.25  Aligned_cols=147  Identities=14%  Similarity=0.090  Sum_probs=90.5

Q ss_pred             ccCCCCCeeEEecC-CCC------CcCCCCCCCCCCCcchhhhhhccccCCcceEEEecccc--ccccccchHHHHHHHH
Q 021210           44 SLSSSAPIIQTVGG-KQS------SWHGGNSNNSNGSIEAYEEECDWADLDADLYYWTKSLR--PVQWYPGHIAKTEKEL  114 (316)
Q Consensus        44 ~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~--~i~~~Pgh~~~~~r~l  114 (316)
                      .+...+|.|.|+|. ..+      ...++.+     ..|    +..++|.+...+.+...-.  .+-++||| ..+....
T Consensus       285 ~~~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v-----~~~----e~~GIT~~iga~~v~~~~~~ItfiDTPGh-e~F~~m~  354 (787)
T PRK05306        285 DLVPRPPVVTIMGHVDHGKTSLLDAIRKTNV-----AAG----EAGGITQHIGAYQVETNGGKITFLDTPGH-EAFTAMR  354 (787)
T ss_pred             ccccCCCEEEEECCCCCCHHHHHHHHHhCCc-----ccc----ccCceeeeccEEEEEECCEEEEEEECCCC-ccchhHH
Confidence            34667888888886 221      1111111     111    2234555555444332222  26688999 5676666


Q ss_pred             HHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCEEEEEEccCCCCh--HhHHHHHHHH----HhcC--ceEEEecc
Q 021210          115 KDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISM--ADRNAWATYF----AKQG--TKVIFSNG  184 (316)
Q Consensus       115 ~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~IlVlNK~DLv~~--~~~~~~~~~~----~~~g--~~vi~iSa  184 (316)
                      ...+..+|++|+|+|+.++......+...+.  .+.|+|+++||+|+...  ......+..+    ...|  ..++++||
T Consensus       355 ~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSA  434 (787)
T PRK05306        355 ARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSA  434 (787)
T ss_pred             HhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeC
Confidence            6788999999999999987644333333332  36899999999999642  2221111111    1122  56899999


Q ss_pred             ccccchhhhHHHHHHh
Q 021210          185 QLGMGTMKLSRLAKAL  200 (316)
Q Consensus       185 ~~g~gi~~L~~~L~~l  200 (316)
                      ++|.|+++|.+.+...
T Consensus       435 ktG~GI~eLle~I~~~  450 (787)
T PRK05306        435 KTGEGIDELLEAILLQ  450 (787)
T ss_pred             CCCCCchHHHHhhhhh
Confidence            9999999998877644

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=98.42  E-value=1.2e-06  Score=74.24  Aligned_cols=99  Identities=12%  Similarity=0.061  Sum_probs=66.2

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HH---HHHh-CCCCEEEEEEccCCCChHh--HHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LM---DQWL-GNRKRILVLNREDMISMAD--RNAWATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i---~~~l-~~k~~IlVlNK~DLv~~~~--~~~~~~~  171 (316)
                      +-++||+ .++.......+..+|.+|+|+|+.++.+..+.  .+   ..+. .+.|+++|.||+|+.....  .++...+
T Consensus        55 i~D~~G~-~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~  133 (166)
T cd01869          55 IWDTAGQ-ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEF  133 (166)
T ss_pred             EEECCCc-HhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHH
Confidence            4467998 45666666778999999999999765422111  11   1111 2579999999999865432  1222233


Q ss_pred             HHhcCceEEEeccccccchhhhHHHHHH
Q 021210          172 FAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      ....+.+++++||++|.|++++.+.+.+
T Consensus       134 ~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  161 (166)
T cd01869         134 ADELGIPFLETSAKNATNVEQAFMTMAR  161 (166)
T ss_pred             HHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence            3445678999999999999998776543

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.42  E-value=1.3e-06  Score=86.81  Aligned_cols=101  Identities=16%  Similarity=0.101  Sum_probs=72.0

Q ss_pred             cccccchHHHHHHHHH-HHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChHhHHHHHHHHHhcC
Q 021210          100 VQWYPGHIAKTEKELK-DQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQG  176 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~-~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g  176 (316)
                      +-++||| + ++-.|+ ...+-+|++++|||+.+++.....+-.+.++  +-|+++++||+|..+... ......+.+.|
T Consensus        59 FiDTPGH-e-AFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np-~~v~~el~~~g  135 (509)
T COG0532          59 FIDTPGH-E-AFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANP-DKVKQELQEYG  135 (509)
T ss_pred             EEcCCcH-H-HHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCH-HHHHHHHHHcC
Confidence            6689999 3 344455 6688999999999999988665544444443  789999999999975432 11222233333


Q ss_pred             ---------ceEEEeccccccchhhhHHHHHHhhhh
Q 021210          177 ---------TKVIFSNGQLGMGTMKLSRLAKALASD  203 (316)
Q Consensus       177 ---------~~vi~iSa~~g~gi~~L~~~L~~l~~~  203 (316)
                               ..++++||++|+|+.+|...+.-+++.
T Consensus       136 l~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~aev  171 (509)
T COG0532         136 LVPEEWGGDVIFVPVSAKTGEGIDELLELILLLAEV  171 (509)
T ss_pred             CCHhhcCCceEEEEeeccCCCCHHHHHHHHHHHHHH
Confidence                     358899999999999999887665543

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=98.42  E-value=1.7e-07  Score=80.31  Aligned_cols=77  Identities=21%  Similarity=0.151  Sum_probs=54.4

Q ss_pred             hhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCEEEEEEccCCCChHhHH-HHHHHHHhcCceEEEeccccccchhhhHH
Q 021210          119 KLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRN-AWATYFAKQGTKVIFSNGQLGMGTMKLSR  195 (316)
Q Consensus       119 ~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~IlVlNK~DLv~~~~~~-~~~~~~~~~g~~vi~iSa~~g~gi~~L~~  195 (316)
                      ++.|+++.|+|++..  .++..+...+  .++|+++|+||+|++.+.... .....-+.+|.+++++||++++|+++|++
T Consensus        77 ~~~D~ii~VvDa~~l--~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~  154 (156)
T PF02421_consen   77 EKPDLIIVVVDATNL--ERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDELKD  154 (156)
T ss_dssp             TSSSEEEEEEEGGGH--HHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHHH
T ss_pred             cCCCEEEEECCCCCH--HHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHHHHh
Confidence            689999999999862  3344443333  389999999999987654321 11122234578999999999999999887


Q ss_pred             HH
Q 021210          196 LA  197 (316)
Q Consensus       196 ~L  197 (316)
                      .+
T Consensus       155 ~I  156 (156)
T PF02421_consen  155 AI  156 (156)
T ss_dssp             HH
T ss_pred             hC
Confidence            53

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd04158 ARD1 ARD1 subfamily

Probab=98.42  E-value=7.8e-07  Score=76.16  Aligned_cols=99  Identities=14%  Similarity=0.089  Sum_probs=63.8

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC--CcHHHHHHhC-----CCCEEEEEEccCCCChHhHHHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST--THPLMDQWLG-----NRKRILVLNREDMISMADRNAWATYF  172 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~--~~~~i~~~l~-----~k~~IlVlNK~DLv~~~~~~~~~~~~  172 (316)
                      +-++||+ .++.......+..+|.+++|+|+.++.+.  ....+..++.     +.|+++|.||+|+......++..+++
T Consensus        47 l~Dt~G~-~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~  125 (169)
T cd04158          47 IWDVGGK-HKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELL  125 (169)
T ss_pred             EEECCCC-hhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHh
Confidence            4467887 44555556778999999999999765322  2223333332     46899999999996432222222222


Q ss_pred             H--hc----CceEEEeccccccchhhhHHHHHH
Q 021210          173 A--KQ----GTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       173 ~--~~----g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      .  +.    ...++.+||++|.|++++.+.|.+
T Consensus       126 ~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~  158 (169)
T cd04158         126 SLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSR  158 (169)
T ss_pred             CCccccCCCcEEEEeCcCCCCCCHHHHHHHHHH
Confidence            1  11    125677899999999998877653

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=98.40  E-value=1.3e-06  Score=75.98  Aligned_cols=100  Identities=11%  Similarity=0.005  Sum_probs=61.7

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF  172 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~  172 (316)
                      +-++||+ .++.......++.+|++++|+|+.++.+..+  ..+..+.     .++|+++|+||+|+......++..+.+
T Consensus        56 l~Dt~G~-~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~  134 (183)
T cd04152          56 FWDVGGQ-EKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLL  134 (183)
T ss_pred             EEECCCc-HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHh
Confidence            3446777 4444444456789999999999987532211  1122221     268999999999986432222222211


Q ss_pred             --Hhc----CceEEEeccccccchhhhHHHHHHh
Q 021210          173 --AKQ----GTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       173 --~~~----g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                        ...    +..++++||++|.|++++.+.+.+.
T Consensus       135 ~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~  168 (183)
T cd04152         135 ALHELSASTPWHVQPACAIIGEGLQEGLEKLYEM  168 (183)
T ss_pred             CccccCCCCceEEEEeecccCCCHHHHHHHHHHH
Confidence              111    2357889999999999887765543

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=98.40  E-value=1.1e-06  Score=73.75  Aligned_cols=98  Identities=12%  Similarity=0.007  Sum_probs=64.4

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF  172 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~  172 (316)
                      +-++||+ .++.......+..+|++++|+|+..+.+..+  ..+...+     .+.|+++|+||+|+......++..+.+
T Consensus        47 i~D~~G~-~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~  125 (158)
T cd00878          47 VWDVGGQ-DKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKL  125 (158)
T ss_pred             EEECCCC-hhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhh
Confidence            4557888 4444555567799999999999987632211  1222222     267999999999998644222332322


Q ss_pred             Hh-----cCceEEEeccccccchhhhHHHHH
Q 021210          173 AK-----QGTKVIFSNGQLGMGTMKLSRLAK  198 (316)
Q Consensus       173 ~~-----~g~~vi~iSa~~g~gi~~L~~~L~  198 (316)
                      ..     ...+++.+|+++|.|++++.+.|.
T Consensus       126 ~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~  156 (158)
T cd00878         126 GLEKILGRRWHIQPCSAVTGDGLDEGLDWLL  156 (158)
T ss_pred             ChhhccCCcEEEEEeeCCCCCCHHHHHHHHh
Confidence            21     124688999999999998876653

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd01889 SelB_euk SelB subfamily

Probab=98.40  E-value=2.2e-07  Score=81.43  Aligned_cols=56  Identities=27%  Similarity=0.439  Sum_probs=40.4

Q ss_pred             eEEeEeccCCCCcchhHHhhhcC------cccccCCCCCceeeEEEE--Ee---------------CCcEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKR------RMCPAAPRPGVTRVLKWV--RF---------------GKDLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~------~~~~vs~~pgtT~~~~~~--~~---------------~~~~~liDTPGi~  273 (316)
                      ++|+++|.+|+|||||+|+|.+.      .....+..+|+|.+....  ..               +..+.++||||..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~   79 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA   79 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH
Confidence            36999999999999999999863      222334457888875321  11               3368899999974

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd00154 Rab Rab family

Probab=98.40  E-value=3.6e-07  Score=75.43  Aligned_cols=56  Identities=23%  Similarity=0.335  Sum_probs=38.6

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCccccc-CCCCCceeeEEEEEeC---CcEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFG---KDLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~v-s~~pgtT~~~~~~~~~---~~~~liDTPGi~  273 (316)
                      +||+++|.+|+|||||+|+|.+...... .+..+.+.....+...   ..+.++||||..
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~   60 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQE   60 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChH
Confidence            3699999999999999999997764443 2223333333333332   347899999974

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=98.40  E-value=1.6e-06  Score=72.87  Aligned_cols=98  Identities=16%  Similarity=0.046  Sum_probs=65.4

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHh------CCCCEEEEEEccCCCChH--hHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWL------GNRKRILVLNREDMISMA--DRN  166 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l------~~k~~IlVlNK~DLv~~~--~~~  166 (316)
                      +-++||+ .++.......+..+|++|+|+|.+++.+..+     ..+.+..      .+.|+++|.||+|+.+..  ..+
T Consensus        53 i~Dt~G~-~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~  131 (168)
T cd04119          53 FFDLSGH-PEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSED  131 (168)
T ss_pred             EEECCcc-HHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHH
Confidence            4467887 4555555567899999999999987533211     1122222      246899999999997322  122


Q ss_pred             HHHHHHHhcCceEEEeccccccchhhhHHHHH
Q 021210          167 AWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK  198 (316)
Q Consensus       167 ~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~L~  198 (316)
                      +..++..+.+..++.+||++|.|++++.+.+.
T Consensus       132 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  163 (168)
T cd04119         132 EGRLWAESKGFKYFETSACTGEGVNEMFQTLF  163 (168)
T ss_pred             HHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            23333444567889999999999999887654

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=98.40  E-value=1.8e-06  Score=90.21  Aligned_cols=154  Identities=16%  Similarity=0.086  Sum_probs=91.9

Q ss_pred             ccCCCCCeeEEecCCCCCcCCCCCCCCCCCcchhh-hhhccccCCcceEEEecc----cc--ccccccchHHHHHHHHHH
Q 021210           44 SLSSSAPIIQTVGGKQSSWHGGNSNNSNGSIEAYE-EECDWADLDADLYYWTKS----LR--PVQWYPGHIAKTEKELKD  116 (316)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-e~e~~~~~d~~~~~~~~~----~~--~i~~~Pgh~~~~~r~l~~  116 (316)
                      .+...+|.|.|+|...--.   +.-+..+..+... .+..++|.+...+.+...    ..  .+-++||| ..+...+..
T Consensus       239 ~l~~r~p~V~IvGhvdvGK---TSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGh-e~F~~mr~r  314 (742)
T CHL00189        239 NSINRPPIVTILGHVDHGK---TTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGH-EAFSSMRSR  314 (742)
T ss_pred             hhcccCCEEEEECCCCCCH---HHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcH-HHHHHHHHH
Confidence            3556778899988721100   0000111111111 222345555544433221    12  26688999 667777778


Q ss_pred             HHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCEEEEEEccCCCChH--hHHHHHHHH----HhcC--ceEEEecccc
Q 021210          117 QLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMA--DRNAWATYF----AKQG--TKVIFSNGQL  186 (316)
Q Consensus       117 ~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~IlVlNK~DLv~~~--~~~~~~~~~----~~~g--~~vi~iSa~~  186 (316)
                      .+..+|++|+|+|+.++......+....+  .+.|+|+++||+|+....  +....+..+    ...|  ..++++||++
T Consensus       315 g~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAkt  394 (742)
T CHL00189        315 GANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQ  394 (742)
T ss_pred             HHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCC
Confidence            89999999999999887544333333333  267999999999997532  222222111    1123  5689999999


Q ss_pred             ccchhhhHHHHHHhh
Q 021210          187 GMGTMKLSRLAKALA  201 (316)
Q Consensus       187 g~gi~~L~~~L~~l~  201 (316)
                      |.|+++|.+.+..+.
T Consensus       395 G~GIdeLle~I~~l~  409 (742)
T CHL00189        395 GTNIDKLLETILLLA  409 (742)
T ss_pred             CCCHHHHHHhhhhhh
Confidence            999999988876654

>cd04112 Rab26 Rab26 subfamily

Probab=98.40  E-value=1.8e-06  Score=75.51  Aligned_cols=102  Identities=10%  Similarity=0.043  Sum_probs=67.7

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHhC-CCCEEEEEEccCCCChHh--HHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWLG-NRKRILVLNREDMISMAD--RNAWATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l~-~k~~IlVlNK~DLv~~~~--~~~~~~~  171 (316)
                      +-++||+ .++.......+..+|++|+|+|+....+..+     ..+..... ..|+++|.||+|+....+  .++..+.
T Consensus        54 i~Dt~G~-~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l  132 (191)
T cd04112          54 IWDTAGQ-ERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERL  132 (191)
T ss_pred             EEeCCCc-HHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHH
Confidence            4478997 4455555567889999999999976532211     11222222 568999999999964321  1222233


Q ss_pred             HHhcCceEEEeccccccchhhhHHHHHHhhh
Q 021210          172 FAKQGTKVIFSNGQLGMGTMKLSRLAKALAS  202 (316)
Q Consensus       172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~l~~  202 (316)
                      ....+..++.+||++|.|+++|...+.+...
T Consensus       133 ~~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~  163 (191)
T cd04112         133 AKEYGVPFMETSAKTGLNVELAFTAVAKELK  163 (191)
T ss_pred             HHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            3445678899999999999999887765543

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PRK13768 GTPase; Provisional

Probab=98.40  E-value=1.3e-06  Score=80.56  Aligned_cols=100  Identities=20%  Similarity=0.231  Sum_probs=67.5

Q ss_pred             cccchHHH-----HHHHHHHHHhh--cCeEEEEEeCCCCCCCCcHHHHHH-------hCCCCEEEEEEccCCCChHhHHH
Q 021210          102 WYPGHIAK-----TEKELKDQLKL--MDVVIEVRDARIPLSTTHPLMDQW-------LGNRKRILVLNREDMISMADRNA  167 (316)
Q Consensus       102 ~~Pgh~~~-----~~r~l~~~i~~--aDlIl~VvDar~~~~~~~~~i~~~-------l~~k~~IlVlNK~DLv~~~~~~~  167 (316)
                      ++||.+.-     ..+.+.+.+..  ++++++|+|++.+....+.....+       ..++|+++|+||+|+++..+.+.
T Consensus       103 d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~~~~~~  182 (253)
T PRK13768        103 DTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSEEELER  182 (253)
T ss_pred             eCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCchhHHH
Confidence            45665332     23444455555  899999999987665544433332       23789999999999997765433


Q ss_pred             HHHHH----------------------------HhcC--ceEEEeccccccchhhhHHHHHHhh
Q 021210          168 WATYF----------------------------AKQG--TKVIFSNGQLGMGTMKLSRLAKALA  201 (316)
Q Consensus       168 ~~~~~----------------------------~~~g--~~vi~iSa~~g~gi~~L~~~L~~l~  201 (316)
                      ..+++                            ++.+  .+++++|++++.|+++|.+.+.+..
T Consensus       183 ~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l  246 (253)
T PRK13768        183 ILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF  246 (253)
T ss_pred             HHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence            32222                            2223  5789999999999999998887654

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=98.39  E-value=1.8e-06  Score=72.41  Aligned_cols=99  Identities=14%  Similarity=-0.019  Sum_probs=67.1

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----CCCCEEEEEEccCCCCh--HhHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISM--ADRNAWAT  170 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l-----~~k~~IlVlNK~DLv~~--~~~~~~~~  170 (316)
                      +-++||+ ..+.......++.+|.+++|+|..++.+..  ...+..+.     .+.|+++|+||+|+.+.  .......+
T Consensus        52 i~D~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~  130 (164)
T cd04139          52 ILDTAGQ-EDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAAN  130 (164)
T ss_pred             EEECCCh-hhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHH
Confidence            3456777 455566667889999999999987653221  12222222     26899999999999762  12233333


Q ss_pred             HHHhcCceEEEeccccccchhhhHHHHHH
Q 021210          171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       171 ~~~~~g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      .....+.+++.+|+++|.|++++.+.+.+
T Consensus       131 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  159 (164)
T cd04139         131 LARQWGVPYVETSAKTRQNVEKAFYDLVR  159 (164)
T ss_pred             HHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence            44455678999999999999998876543

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=98.39  E-value=1.5e-06  Score=72.48  Aligned_cols=98  Identities=10%  Similarity=-0.018  Sum_probs=65.1

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHh--CCCCEEEEEEccCCCChHh-HHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWL--GNRKRILVLNREDMISMAD-RNAWATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l--~~k~~IlVlNK~DLv~~~~-~~~~~~~  171 (316)
                      +-++||+ .++.......++.+|.+++|+|..+..+..+     ..+.++.  .+.|+++|.||+|+..... ..+..+.
T Consensus        53 i~Dt~G~-~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~  131 (162)
T cd04138          53 ILDTAGQ-EEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDL  131 (162)
T ss_pred             EEECCCC-cchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHH
Confidence            3466777 4455555567889999999999876432211     1122221  2579999999999975332 2223333


Q ss_pred             HHhcCceEEEeccccccchhhhHHHHH
Q 021210          172 FAKQGTKVIFSNGQLGMGTMKLSRLAK  198 (316)
Q Consensus       172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~  198 (316)
                      ....+..++.+||++|.|++++.+.+.
T Consensus       132 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~  158 (162)
T cd04138         132 AKSYGIPYIETSAKTRQGVEEAFYTLV  158 (162)
T ss_pred             HHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence            445567889999999999999876654

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>PLN03118 Rab family protein; Provisional

Probab=98.39  E-value=5.7e-07  Score=80.04  Aligned_cols=58  Identities=28%  Similarity=0.389  Sum_probs=41.8

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEeCC---cEEEEeCCCccc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGK---DLEFLDSPGIIP  274 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~~~---~~~liDTPGi~~  274 (316)
                      .++|+++|.+|||||||+|+|++......++..|++.....+.++.   .+.|+||||...
T Consensus        14 ~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~   74 (211)
T PLN03118         14 SFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQER   74 (211)
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchh
Confidence            5789999999999999999999876544444444444444444432   468999999753

>cd01865 Rab3 Rab3 subfamily

Probab=98.39  E-value=2.2e-06  Score=72.81  Aligned_cols=97  Identities=13%  Similarity=0.055  Sum_probs=65.7

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHH---h-----CCCCEEEEEEccCCCChHh--HHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW---L-----GNRKRILVLNREDMISMAD--RNAWA  169 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~---l-----~~k~~IlVlNK~DLv~~~~--~~~~~  169 (316)
                      +-++||+ .++.......++.+|.+++|+|..++.+..  .+..+   +     ...|+++|.||+||.+...  .++..
T Consensus        54 l~Dt~g~-~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~  130 (165)
T cd01865          54 IWDTAGQ-ERYRTITTAYYRGAMGFILMYDITNEESFN--AVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGR  130 (165)
T ss_pred             EEECCCh-HHHHHHHHHHccCCcEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHH
Confidence            4467887 455555567789999999999987643221  12222   1     2568999999999975432  12223


Q ss_pred             HHHHhcCceEEEeccccccchhhhHHHHHH
Q 021210          170 TYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       170 ~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      +.....+..++.+||++|.|+++|.+.+..
T Consensus       131 ~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  160 (165)
T cd01865         131 QLADQLGFEFFEASAKENINVKQVFERLVD  160 (165)
T ss_pred             HHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            334456678999999999999998776544

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd01860 Rab5_related Rab5-related subfamily

Probab=98.38  E-value=6.7e-07  Score=75.26  Aligned_cols=56  Identities=25%  Similarity=0.372  Sum_probs=39.3

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccc-cCCCCCceeeEEEEEeC---CcEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFG---KDLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~-vs~~pgtT~~~~~~~~~---~~~~liDTPGi~  273 (316)
                      +||+++|.+|+|||||+|+|++..... ..+..|.+.....+..+   ..+.++||||-.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~   61 (163)
T cd01860           2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQE   61 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchH
Confidence            579999999999999999999876433 34444543333333333   246799999953

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>PRK10218 GTP-binding protein; Provisional

Probab=98.38  E-value=1.7e-06  Score=88.99  Aligned_cols=118  Identities=16%  Similarity=0.056  Sum_probs=83.1

Q ss_pred             CCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--C
Q 021210           71 NGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--G  146 (316)
Q Consensus        71 ~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~  146 (316)
                      ...|-...|++.+++++.....+.....+  +-++||| .++...+...++.+|.+|+|+|+..+.......+...+  .
T Consensus        41 ~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~-~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~  119 (607)
T PRK10218         41 RVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGH-ADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAY  119 (607)
T ss_pred             eeeccccccccCceEEEEEEEEEecCCEEEEEEECCCc-chhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHc
Confidence            44566666888888888777665544333  6789999 67888888999999999999999887654443333332  3


Q ss_pred             CCCEEEEEEccCCCCh---HhHHHHHHHHHhc-------CceEEEeccccccc
Q 021210          147 NRKRILVLNREDMISM---ADRNAWATYFAKQ-------GTKVIFSNGQLGMG  189 (316)
Q Consensus       147 ~k~~IlVlNK~DLv~~---~~~~~~~~~~~~~-------g~~vi~iSa~~g~g  189 (316)
                      +.|.++++||+|+...   ...++..+.|...       ..+++++||++|.+
T Consensus       120 gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~  172 (607)
T PRK10218        120 GLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIA  172 (607)
T ss_pred             CCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcc
Confidence            6789999999998632   2234444444332       25589999999983

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=98.38  E-value=5.4e-07  Score=92.51  Aligned_cols=52  Identities=44%  Similarity=0.661  Sum_probs=42.7

Q ss_pred             ccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEE--e-CCcEEEEeCCCcccCC
Q 021210          224 GYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-GKDLEFLDSPGIIPMR  276 (316)
Q Consensus       224 G~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~--~-~~~~~liDTPGi~~~~  276 (316)
                      |.||||||||+|+|.+.+ ..+++.||+|.+.....  . +..+.++||||.....
T Consensus         1 G~pNvGKSSL~N~Ltg~~-~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~   55 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGAN-QTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLT   55 (591)
T ss_pred             CCCCCCHHHHHHHHhCCC-CeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccC
Confidence            899999999999999876 58999999999865332  2 4568999999997543

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=98.38  E-value=1.5e-06  Score=75.11  Aligned_cols=99  Identities=11%  Similarity=0.018  Sum_probs=62.8

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC--CcHHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST--THPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF  172 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~--~~~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~  172 (316)
                      +-++||+ .++.......++.+|++|+|+|+.++.+.  ....+..++     .+.|+++|.||+||.+.....+..+.+
T Consensus        61 l~D~~G~-~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~  139 (175)
T smart00177       61 VWDVGGQ-DKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKL  139 (175)
T ss_pred             EEECCCC-hhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHh
Confidence            4556777 45555555668999999999998765322  122233332     246899999999996432222222221


Q ss_pred             H-----hcCceEEEeccccccchhhhHHHHHH
Q 021210          173 A-----KQGTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       173 ~-----~~g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      .     .....++++||++|.|++++.+.|.+
T Consensus       140 ~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~  171 (175)
T smart00177      140 GLHSIRDRNWYIQPTCATSGDGLYEGLTWLSN  171 (175)
T ss_pred             CccccCCCcEEEEEeeCCCCCCHHHHHHHHHH
Confidence            1     11124667999999999998877654

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd01861 Rab6 Rab6 subfamily

Probab=98.38  E-value=1.8e-06  Score=72.46  Aligned_cols=99  Identities=14%  Similarity=0.086  Sum_probs=67.3

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHhC----CCCEEEEEEccCCCChHh--HHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG----NRKRILVLNREDMISMAD--RNAWATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l~----~k~~IlVlNK~DLv~~~~--~~~~~~~  171 (316)
                      +-++||+ .++.......+..+|++++|+|+.++.+..+  ..+..+..    +.|+++|+||+|+....+  .++....
T Consensus        53 ~~D~~G~-~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~  131 (161)
T cd01861          53 LWDTAGQ-ERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKK  131 (161)
T ss_pred             EEECCCc-HHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHH
Confidence            4567887 5566667778999999999999976543221  11222211    378999999999954321  2222333


Q ss_pred             HHhcCceEEEeccccccchhhhHHHHHH
Q 021210          172 FAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      ....+..++.+|++++.|++++.+.+.+
T Consensus       132 ~~~~~~~~~~~Sa~~~~~v~~l~~~i~~  159 (161)
T cd01861         132 AKELNAMFIETSAKAGHNVKELFRKIAS  159 (161)
T ss_pred             HHHhCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            3345677899999999999998887654

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd00154 Rab Rab family

Probab=98.38  E-value=2e-06  Score=70.97  Aligned_cols=98  Identities=15%  Similarity=0.022  Sum_probs=66.6

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh-----CCCCEEEEEEccCCC-ChH-hHHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLMDQWL-----GNRKRILVLNREDMI-SMA-DRNAWATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-~~i~~~l-----~~k~~IlVlNK~DLv-~~~-~~~~~~~~  171 (316)
                      +-++||+ ..+.......++++|++++|+|+.++.+... ..+...+     ...|+++++||+|+. +.. ..++..+.
T Consensus        53 l~D~~g~-~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~  131 (159)
T cd00154          53 IWDTAGQ-ERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQF  131 (159)
T ss_pred             EEecCCh-HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHH
Confidence            4567888 4566666778899999999999986432111 1111111     247999999999996 222 22333344


Q ss_pred             HHhcCceEEEeccccccchhhhHHHHH
Q 021210          172 FAKQGTKVIFSNGQLGMGTMKLSRLAK  198 (316)
Q Consensus       172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~  198 (316)
                      ..+.+.+++.+|++.+.|++++.+.+.
T Consensus       132 ~~~~~~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154         132 AKENGLLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             HHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence            445567899999999999999877653

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd01893 Miro1 Miro1 subfamily

Probab=98.37  E-value=1.6e-06  Score=73.89  Aligned_cols=100  Identities=10%  Similarity=0.017  Sum_probs=64.8

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHH----hCCCCEEEEEEccCCCChHhH---HHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQW----LGNRKRILVLNREDMISMADR---NAWAT  170 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~----l~~k~~IlVlNK~DLv~~~~~---~~~~~  170 (316)
                      +-++||+ .++...+...+..+|++++|+|+.++.+...  ..+...    ..+.|+++|.||+|+.+....   ++...
T Consensus        51 i~Dt~G~-~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~  129 (166)
T cd01893          51 IVDTSSR-PQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEML  129 (166)
T ss_pred             EEeCCCc-hhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHH
Confidence            4456777 3455556667899999999999987654433  112221    236799999999999764331   12111


Q ss_pred             HH-HhcC--ceEEEeccccccchhhhHHHHHHh
Q 021210          171 YF-AKQG--TKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       171 ~~-~~~g--~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      .+ .+..  ..++.+||++|.|++++.+.+...
T Consensus       130 ~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~  162 (166)
T cd01893         130 PIMNEFREIETCVECSAKTLINVSEVFYYAQKA  162 (166)
T ss_pred             HHHHHHhcccEEEEeccccccCHHHHHHHHHHH
Confidence            11 1111  368899999999999988766543

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd01863 Rab18 Rab18 subfamily

Probab=98.37  E-value=7.4e-07  Score=74.95  Aligned_cols=56  Identities=29%  Similarity=0.370  Sum_probs=39.9

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccc-cCCCCCceeeEEEEEeCC---cEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~-vs~~pgtT~~~~~~~~~~---~~~liDTPGi~  273 (316)
                      +||+++|.+|+|||||+|+|.+..... ..+.++.+.....+..+.   .+.++||||..
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   60 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQE   60 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCch
Confidence            379999999999999999999765422 444455554444344432   47899999964

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=98.37  E-value=2.6e-06  Score=72.54  Aligned_cols=97  Identities=14%  Similarity=0.085  Sum_probs=66.2

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--------CCCCEEEEEEccCCCChHh--HHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNREDMISMAD--RNAWA  169 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--------~~k~~IlVlNK~DLv~~~~--~~~~~  169 (316)
                      +-++||+ .++.......++++|++++|+|+.++.+..  .+..++        .+.|+++|.||+|+.+..+  .++..
T Consensus        56 l~D~~g~-~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~  132 (167)
T cd01867          56 IWDTAGQ-ERFRTITTAYYRGAMGIILVYDITDEKSFE--NIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGE  132 (167)
T ss_pred             EEeCCch-HHHHHHHHHHhCCCCEEEEEEECcCHHHHH--hHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHH
Confidence            4467887 456666667789999999999997654321  222221        2468999999999975321  22233


Q ss_pred             HHHHhcCceEEEeccccccchhhhHHHHHH
Q 021210          170 TYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       170 ~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      +.....+..++.+||++|.|++++.+.+.+
T Consensus       133 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  162 (167)
T cd01867         133 ALADEYGIKFLETSAKANINVEEAFFTLAK  162 (167)
T ss_pred             HHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            344455677899999999999998766543

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd00880 Era_like Era (E

Probab=98.37  E-value=3.9e-07  Score=74.66  Aligned_cols=56  Identities=32%  Similarity=0.413  Sum_probs=45.0

Q ss_pred             EeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe----CCcEEEEeCCCcccCCC
Q 021210          222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF----GKDLEFLDSPGIIPMRI  277 (316)
Q Consensus       222 ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~----~~~~~liDTPGi~~~~~  277 (316)
                      ++|.+|+|||||+|+|.+......+..+++|........    ...+.++||||+.....
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~   60 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGG   60 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCcccc
Confidence            589999999999999998877768888888887654333    44789999999975443

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=98.36  E-value=2.1e-06  Score=77.69  Aligned_cols=90  Identities=19%  Similarity=0.168  Sum_probs=69.5

Q ss_pred             CCCCcchhhhhhccccCCcceE--EEecc--------cc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC
Q 021210           70 SNGSIEAYEEECDWADLDADLY--YWTKS--------LR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT  137 (316)
Q Consensus        70 ~~~~~g~~~e~e~~~~~d~~~~--~~~~~--------~~--~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~  137 (316)
                      ..++|-...|++.+++++....  .|...        ..  .+-++||| .++..++...+..+|.+++|+|+..+....
T Consensus        35 ~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTPG~-~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~  113 (222)
T cd01885          35 ARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSPGH-VDFSSEVTAALRLCDGALVVVDAVEGVCVQ  113 (222)
T ss_pred             eeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCCCc-cccHHHHHHHHHhcCeeEEEEECCCCCCHH
Confidence            3477888899999999998744  56532        11  26789999 678889999999999999999999887655


Q ss_pred             cHHHHHHh--CCCCEEEEEEccCCC
Q 021210          138 HPLMDQWL--GNRKRILVLNREDMI  160 (316)
Q Consensus       138 ~~~i~~~l--~~k~~IlVlNK~DLv  160 (316)
                      ...+.+..  .+.|+++|+||+|+.
T Consensus       114 t~~~l~~~~~~~~p~ilviNKiD~~  138 (222)
T cd01885         114 TETVLRQALKERVKPVLVINKIDRL  138 (222)
T ss_pred             HHHHHHHHHHcCCCEEEEEECCCcc
Confidence            44444433  267999999999986

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd01866 Rab2 Rab2 subfamily

Probab=98.36  E-value=8.6e-07  Score=75.66  Aligned_cols=56  Identities=25%  Similarity=0.357  Sum_probs=38.8

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccC-CCCCceeeEEEEEeCC---cEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAA-PRPGVTRVLKWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs-~~pgtT~~~~~~~~~~---~~~liDTPGi~  273 (316)
                      .+|+++|.+|||||||+|++.+....... ...|.+.....+..+.   .+.++||||-.
T Consensus         5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~   64 (168)
T cd01866           5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE   64 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcH
Confidence            68999999999999999999976543332 2234444333344432   57899999953

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>PLN00223 ADP-ribosylation factor; Provisional

Probab=98.36  E-value=2.1e-06  Score=74.85  Aligned_cols=98  Identities=11%  Similarity=0.034  Sum_probs=63.1

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF  172 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~  172 (316)
                      +-++||+ .++.......++.+|++|+|+|+.+..+..  ...+..++     .+.|+++|.||+|+....+.++..+.+
T Consensus        65 i~D~~Gq-~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l  143 (181)
T PLN00223         65 VWDVGGQ-DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKL  143 (181)
T ss_pred             EEECCCC-HHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHh
Confidence            4456887 555555556789999999999998654221  12333333     357899999999986544333333322


Q ss_pred             HhcC-----ceEEEeccccccchhhhHHHHH
Q 021210          173 AKQG-----TKVIFSNGQLGMGTMKLSRLAK  198 (316)
Q Consensus       173 ~~~g-----~~vi~iSa~~g~gi~~L~~~L~  198 (316)
                      .-..     ..++.+||++|+|++++.+.|.
T Consensus       144 ~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~  174 (181)
T PLN00223        144 GLHSLRQRHWYIQSTCATSGEGLYEGLDWLS  174 (181)
T ss_pred             CccccCCCceEEEeccCCCCCCHHHHHHHHH
Confidence            1111     1245689999999988877654

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=98.35  E-value=1.6e-06  Score=75.55  Aligned_cols=98  Identities=14%  Similarity=0.075  Sum_probs=64.4

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC--CcHHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST--THPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF  172 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~--~~~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~  172 (316)
                      +-++||+ .++.......++.+|.+++|+|+.++...  ....+.+++     .+.|+++|+||+|+......++..+.+
T Consensus        65 ~~D~~G~-~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l  143 (184)
T smart00178       65 TFDLGGH-QQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYAL  143 (184)
T ss_pred             EEECCCC-HHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHc
Confidence            4567887 44555556778999999999999875322  122333333     367999999999985322222233222


Q ss_pred             H--h----------cCceEEEeccccccchhhhHHHHH
Q 021210          173 A--K----------QGTKVIFSNGQLGMGTMKLSRLAK  198 (316)
Q Consensus       173 ~--~----------~g~~vi~iSa~~g~gi~~L~~~L~  198 (316)
                      .  .          .-..++++||++|.|++++.+.|.
T Consensus       144 ~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~  181 (184)
T smart00178      144 GLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLS  181 (184)
T ss_pred             CCCcccccccccCCceeEEEEeecccCCChHHHHHHHH
Confidence            1  0          013588999999999999887764

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=98.35  E-value=3.4e-06  Score=69.09  Aligned_cols=100  Identities=22%  Similarity=0.177  Sum_probs=79.0

Q ss_pred             cccccchH---HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCEEEEEEccCCCChHhHHHHHHHHHhcC
Q 021210          100 VQWYPGHI---AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQG  176 (316)
Q Consensus       100 i~~~Pgh~---~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g  176 (316)
                      ..+.||.-   .+....+.....++|++++|..+.++.+...+.+.... .+|+|-|++|+||....+++...+++.+.|
T Consensus        41 ~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p~f~~~~-~k~vIgvVTK~DLaed~dI~~~~~~L~eaG  119 (148)
T COG4917          41 DIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFPPGFLDIG-VKKVIGVVTKADLAEDADISLVKRWLREAG  119 (148)
T ss_pred             ccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCCccccccc-ccceEEEEecccccchHhHHHHHHHHHHcC
Confidence            45677762   34445577778999999999999999888887765544 456999999999998777776677777778


Q ss_pred             -ceEEEeccccccchhhhHHHHHHh
Q 021210          177 -TKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       177 -~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                       .+++.+|+.++.|+++|.++|..+
T Consensus       120 a~~IF~~s~~d~~gv~~l~~~L~~~  144 (148)
T COG4917         120 AEPIFETSAVDNQGVEELVDYLASL  144 (148)
T ss_pred             CcceEEEeccCcccHHHHHHHHHhh
Confidence             457789999999999999987654

>cd01864 Rab19 Rab19 subfamily

Probab=98.35  E-value=2.4e-06  Score=72.35  Aligned_cols=98  Identities=14%  Similarity=0.043  Sum_probs=65.0

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh-----CCCCEEEEEEccCCCChHh--HHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLMDQWL-----GNRKRILVLNREDMISMAD--RNAWATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-~~i~~~l-----~~k~~IlVlNK~DLv~~~~--~~~~~~~  171 (316)
                      +-++||+ .++.......+..+|++++|+|+.++.+... ..+...+     .+.|+++|.||+|+....+  .+...+.
T Consensus        56 i~D~~G~-~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~  134 (165)
T cd01864          56 IWDTAGQ-ERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTL  134 (165)
T ss_pred             EEECCCh-HHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHH
Confidence            4578998 5566666677889999999999987643221 1121111     1468999999999975432  1222223


Q ss_pred             HHhcC-ceEEEeccccccchhhhHHHHH
Q 021210          172 FAKQG-TKVIFSNGQLGMGTMKLSRLAK  198 (316)
Q Consensus       172 ~~~~g-~~vi~iSa~~g~gi~~L~~~L~  198 (316)
                      .+..+ ..++.+||++|.|++++.+.+.
T Consensus       135 ~~~~~~~~~~e~Sa~~~~~v~~~~~~l~  162 (165)
T cd01864         135 AEKNGMLAVLETSAKESQNVEEAFLLMA  162 (165)
T ss_pred             HHHcCCcEEEEEECCCCCCHHHHHHHHH
Confidence            33334 3678999999999998876654

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=98.35  E-value=1.3e-06  Score=85.52  Aligned_cols=125  Identities=17%  Similarity=0.097  Sum_probs=86.0

Q ss_pred             CcchhhhhhccccCCcceE-EEecccc------ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-HHHHH
Q 021210           73 SIEAYEEECDWADLDADLY-YWTKSLR------PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQW  144 (316)
Q Consensus        73 ~~g~~~e~e~~~~~d~~~~-~~~~~~~------~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-~i~~~  144 (316)
                      .|-.--|+|.++|+....+ ...+...      ...++||| ..+.-+.-..++-+.-+|+||||..+...... ..+..
T Consensus        46 LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH-VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlA  124 (603)
T COG0481          46 LDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH-VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLA  124 (603)
T ss_pred             hhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc-cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHH
Confidence            4444559999999998877 3333221      27789999 77887888889999999999999987643211 11122


Q ss_pred             h-CCCCEEEEEEccCCCChHhHHHHHHHHHh-cC---ceEEEeccccccchhhhHHHHHH
Q 021210          145 L-GNRKRILVLNREDMISMADRNAWATYFAK-QG---TKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       145 l-~~k~~IlVlNK~DLv~~~~~~~~~~~~~~-~g---~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      + .+-.++-|+||+||-..+ .+...+.+.. .|   .+.+.+||++|.|++++.+.+..
T Consensus       125 le~~LeIiPViNKIDLP~Ad-pervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~  183 (603)
T COG0481         125 LENNLEIIPVLNKIDLPAAD-PERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVE  183 (603)
T ss_pred             HHcCcEEEEeeecccCCCCC-HHHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHh
Confidence            2 267889999999985332 2223333332 34   35789999999999998776554

>cd01868 Rab11_like Rab11-like

Probab=98.34  E-value=9.5e-07  Score=74.67  Aligned_cols=55  Identities=16%  Similarity=0.350  Sum_probs=38.2

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~  273 (316)
                      ++|+++|.+|||||||+|+|.+.+. .....|.++.+.  ..+..+.   .+.++||||..
T Consensus         4 ~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~   63 (165)
T cd01868           4 FKIVLIGDSGVGKSNLLSRFTRNEF-NLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQE   63 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccceEEEEEEEEECCEEEEEEEEeCCChH
Confidence            5799999999999999999997653 233334444332  2233332   46799999975

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=98.34  E-value=2.3e-06  Score=72.17  Aligned_cols=99  Identities=9%  Similarity=-0.072  Sum_probs=65.3

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHhC--CCCEEEEEEccCCCChHh--HHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWLG--NRKRILVLNREDMISMAD--RNAWAT  170 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l~--~k~~IlVlNK~DLv~~~~--~~~~~~  170 (316)
                      +-++||+ .++.......+..+|.+++|+|+.++.+...     ..+.+...  +.|+++|.||+|+.+...  .+...+
T Consensus        52 i~Dt~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~  130 (164)
T smart00173       52 ILDTAGQ-EEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKE  130 (164)
T ss_pred             EEECCCc-ccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHH
Confidence            4467887 4455555567889999999999987543211     11122111  579999999999975321  122222


Q ss_pred             HHHhcCceEEEeccccccchhhhHHHHHH
Q 021210          171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       171 ~~~~~g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      .....+..++.+||++|.|++++.+.+.+
T Consensus       131 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  159 (164)
T smart00173      131 LARQWGCPFLETSAKERVNVDEAFYDLVR  159 (164)
T ss_pred             HHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence            33344577899999999999998876543

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd01850 CDC_Septin CDC/Septin

Probab=98.34  E-value=8e-07  Score=82.98  Aligned_cols=59  Identities=24%  Similarity=0.345  Sum_probs=40.3

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCC--------CCCce-eeEEEEEe---C--CcEEEEeCCCccc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAP--------RPGVT-RVLKWVRF---G--KDLEFLDSPGIIP  274 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~--------~pgtT-~~~~~~~~---~--~~~~liDTPGi~~  274 (316)
                      ..++|+++|.+|+|||||+|+|++......+.        .+.|+ .......+   +  -.+.++||||+-.
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd   75 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGD   75 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccc
Confidence            35789999999999999999999877554432        23332 22222222   2  2488999999964

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>PRK11058 GTPase HflX; Provisional

Probab=98.34  E-value=4.5e-06  Score=82.56  Aligned_cols=119  Identities=15%  Similarity=0.121  Sum_probs=73.1

Q ss_pred             hhccccCCcceEEEecc-c--cccccccch-------HHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH----HHHHHh
Q 021210           80 ECDWADLDADLYYWTKS-L--RPVQWYPGH-------IAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP----LMDQWL  145 (316)
Q Consensus        80 ~e~~~~~d~~~~~~~~~-~--~~i~~~Pgh-------~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~----~i~~~l  145 (316)
                      +..+.|+|...+.+.-. .  --+.++||.       ..+..+.+.+.+..||++|+|+|+.++....+.    .+...+
T Consensus       226 ~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el  305 (426)
T PRK11058        226 DQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEI  305 (426)
T ss_pred             cCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHh
Confidence            44556666654322211 1  125556665       223345566778999999999999887544332    112222


Q ss_pred             C--CCCEEEEEEccCCCChHhHHHHHHHHHhcCce-EEEeccccccchhhhHHHHHHhh
Q 021210          146 G--NRKRILVLNREDMISMADRNAWATYFAKQGTK-VIFSNGQLGMGTMKLSRLAKALA  201 (316)
Q Consensus       146 ~--~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~~-vi~iSa~~g~gi~~L~~~L~~l~  201 (316)
                      .  ++|+++|+||+|+.+.... . .+. ...+.. ++++||++|.|+++|.+.+....
T Consensus       306 ~~~~~pvIiV~NKiDL~~~~~~-~-~~~-~~~~~~~~v~ISAktG~GIdeL~e~I~~~l  361 (426)
T PRK11058        306 DAHEIPTLLVMNKIDMLDDFEP-R-IDR-DEENKPIRVWLSAQTGAGIPLLFQALTERL  361 (426)
T ss_pred             ccCCCCEEEEEEcccCCCchhH-H-HHH-HhcCCCceEEEeCCCCCCHHHHHHHHHHHh
Confidence            2  5899999999999754221 1 111 122333 57899999999999988876543

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=98.34  E-value=1.4e-06  Score=74.52  Aligned_cols=99  Identities=13%  Similarity=-0.038  Sum_probs=64.0

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHhCCCCEEEEEEccCCCChHhHHHHHHHHHh
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLGNRKRILVLNREDMISMADRNAWATYFAK  174 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l~~k~~IlVlNK~DLv~~~~~~~~~~~~~~  174 (316)
                      +-++||+ .++.......+..+|++|+|+|..++.+..+.     .+.+...+.|+++|.||+|+.......+..++...
T Consensus        53 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~  131 (166)
T cd00877          53 VWDTAGQ-EKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQITFHRK  131 (166)
T ss_pred             EEECCCC-hhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHHHHHHHHH
Confidence            4556776 33333334567889999999999876443221     12222236899999999999733211111223333


Q ss_pred             cCceEEEeccccccchhhhHHHHHH
Q 021210          175 QGTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       175 ~g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      .+.+++.+||++|.|++++.+.+.+
T Consensus       132 ~~~~~~e~Sa~~~~~v~~~f~~l~~  156 (166)
T cd00877         132 KNLQYYEISAKSNYNFEKPFLWLAR  156 (166)
T ss_pred             cCCEEEEEeCCCCCChHHHHHHHHH
Confidence            4567999999999999998877653

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>PTZ00099 rab6; Provisional

Probab=98.34  E-value=2e-06  Score=74.86  Aligned_cols=101  Identities=14%  Similarity=0.023  Sum_probs=67.4

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh----CCCCEEEEEEccCCCChH--hHHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL----GNRKRILVLNREDMISMA--DRNAWATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l----~~k~~IlVlNK~DLv~~~--~~~~~~~~  171 (316)
                      +-++||+ .++.......+..||++|+|+|..++.+..+  ..+..++    ...|+++|.||+||....  ..++....
T Consensus        33 iwDt~G~-e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~e~~~~  111 (176)
T PTZ00099         33 LWDTAGQ-ERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQK  111 (176)
T ss_pred             EEECCCh-HHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCCCHHHHHHH
Confidence            4456887 5666666678999999999999877543222  2222222    245789999999996421  12222333


Q ss_pred             HHhcCceEEEeccccccchhhhHHHHHHhh
Q 021210          172 FAKQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (316)
Q Consensus       172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~l~  201 (316)
                      ....+..++.+||++|.|++++.+.+....
T Consensus       112 ~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l  141 (176)
T PTZ00099        112 AQEYNTMFHETSAKAGHNIKVLFKKIAAKL  141 (176)
T ss_pred             HHHcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            344456678899999999999887766544

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=98.33  E-value=2.7e-06  Score=73.15  Aligned_cols=102  Identities=16%  Similarity=0.020  Sum_probs=66.7

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHhC-----CCCEEEEEEccCCCChHhH---HH-H
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG-----NRKRILVLNREDMISMADR---NA-W  168 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l~-----~k~~IlVlNK~DLv~~~~~---~~-~  168 (316)
                      +-++||. .++.......+..+|++++|+|+.+..+...  ..+..++.     ..|+++|.||+|+.+..+.   ++ .
T Consensus        53 i~Dt~G~-~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~  131 (170)
T cd04108          53 LWDTAGQ-ERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDA  131 (170)
T ss_pred             EEeCCCh-HHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHH
Confidence            4456777 5565555677899999999999976432221  11222221     2358999999999754321   11 1


Q ss_pred             HHHHHhcCceEEEeccccccchhhhHHHHHHhhh
Q 021210          169 ATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALAS  202 (316)
Q Consensus       169 ~~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l~~  202 (316)
                      .+...+.+.+++.+||++|.|++++.+.+..+..
T Consensus       132 ~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~~  165 (170)
T cd04108         132 IKLAAEMQAEYWSVSALSGENVREFFFRVAALTF  165 (170)
T ss_pred             HHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            1223344567889999999999999888766654

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd00879 Sar1 Sar1 subfamily

Probab=98.33  E-value=2.1e-06  Score=74.50  Aligned_cols=99  Identities=16%  Similarity=0.130  Sum_probs=63.9

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC--CcHHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST--THPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF  172 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~--~~~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~  172 (316)
                      +-+.||+ .++.+.....+..+|.+++|+|+.+..+.  ....+...+     .+.|+++++||+|+......++..+++
T Consensus        67 l~D~~G~-~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~  145 (190)
T cd00879          67 TFDLGGH-EQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQAL  145 (190)
T ss_pred             EEECCCC-HHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHh
Confidence            4567887 44545455678999999999999864221  112233333     257999999999996432222233322


Q ss_pred             Hh----------------cCceEEEeccccccchhhhHHHHHH
Q 021210          173 AK----------------QGTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       173 ~~----------------~g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      ..                ....++.+||++|.|++++.+.+.+
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~  188 (190)
T cd00879         146 GLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQ  188 (190)
T ss_pred             CcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHh
Confidence            11                1135789999999999998877654

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=98.33  E-value=2.5e-06  Score=75.23  Aligned_cols=100  Identities=13%  Similarity=0.060  Sum_probs=67.0

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHh-----CCCCEEEEEEccCCCCh--HhHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL-----GNRKRILVLNREDMISM--ADRNA  167 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l-----~~k~~IlVlNK~DLv~~--~~~~~  167 (316)
                      +-++||+ .++.......+.++|.+|+|+|..++.+..+.     .+...+     ...|+++|.||+|+.+.  ...++
T Consensus        54 l~Dt~G~-~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~  132 (201)
T cd04107          54 LWDIAGQ-ERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQ  132 (201)
T ss_pred             EEECCCc-hhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHH
Confidence            4457887 45555556778999999999998876443221     222221     24689999999999632  12223


Q ss_pred             HHHHHHhcC-ceEEEeccccccchhhhHHHHHHh
Q 021210          168 WATYFAKQG-TKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       168 ~~~~~~~~g-~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      ..++....+ ..++.+||++|.|++++.+.+.+.
T Consensus       133 ~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~  166 (201)
T cd04107         133 MDQFCKENGFIGWFETSAKEGINIEEAMRFLVKN  166 (201)
T ss_pred             HHHHHHHcCCceEEEEeCCCCCCHHHHHHHHHHH
Confidence            334444555 578999999999999987766543

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04154 Arl2 Arl2 subfamily

Probab=98.33  E-value=7.9e-07  Score=76.25  Aligned_cols=55  Identities=25%  Similarity=0.436  Sum_probs=38.5

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCcc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII  273 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~  273 (316)
                      .++|+++|.+|||||||+|+|.+.......+..|....  .+.. +..+.++||||..
T Consensus        14 ~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~--~~~~~~~~l~l~D~~G~~   69 (173)
T cd04154          14 EMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIK--TLEYEGYKLNIWDVGGQK   69 (173)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceE--EEEECCEEEEEEECCCCH
Confidence            46899999999999999999998754334443343222  2222 3357899999975

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04132 Rho4_like Rho4-like subfamily

Probab=98.32  E-value=3.3e-06  Score=73.13  Aligned_cols=101  Identities=13%  Similarity=-0.036  Sum_probs=65.8

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH--HHHH----hCCCCEEEEEEccCCCChH------hHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQW----LGNRKRILVLNREDMISMA------DRNA  167 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~--i~~~----l~~k~~IlVlNK~DLv~~~------~~~~  167 (316)
                      +-++||+ .++.......++.+|++|+|+|..+..+..+..  +...    ..+.|+++|.||+||.+..      ...+
T Consensus        53 i~Dt~G~-~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~  131 (187)
T cd04132          53 LWDTAGQ-EEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQ  131 (187)
T ss_pred             EEECCCc-hhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHH
Confidence            4456786 445544445678999999999998754432221  1111    1367999999999996532      1122


Q ss_pred             HHHHHHhcCc-eEEEeccccccchhhhHHHHHHhh
Q 021210          168 WATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKALA  201 (316)
Q Consensus       168 ~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~L~~l~  201 (316)
                      ..+.....+. .++.+||++|.|++++...+....
T Consensus       132 ~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~  166 (187)
T cd04132         132 AESVAKKQGAFAYLECSAKTMENVEEVFDTAIEEA  166 (187)
T ss_pred             HHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHH
Confidence            2223344555 789999999999999877665543

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=98.32  E-value=2.1e-06  Score=84.73  Aligned_cols=101  Identities=20%  Similarity=0.211  Sum_probs=65.4

Q ss_pred             cccccchHH------HHHHHHHHHHhhcCeEEEEEeCCCCCC--CC--cHHHHHH-------hCCCCEEEEEEccCCCCh
Q 021210          100 VQWYPGHIA------KTEKELKDQLKLMDVVIEVRDARIPLS--TT--HPLMDQW-------LGNRKRILVLNREDMISM  162 (316)
Q Consensus       100 i~~~Pgh~~------~~~r~l~~~i~~aDlIl~VvDar~~~~--~~--~~~i~~~-------l~~k~~IlVlNK~DLv~~  162 (316)
                      +.+.||...      .........++++|++|+|+|+.....  ..  ...+...       +.++|.++|+||+||...
T Consensus       210 laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~  289 (424)
T PRK12297        210 MADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA  289 (424)
T ss_pred             EEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC
Confidence            778898632      123445566889999999999864311  10  1112222       236899999999998533


Q ss_pred             HhHHHHHHHHHhcCceEEEeccccccchhhhHHHHHHhhh
Q 021210          163 ADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALAS  202 (316)
Q Consensus       163 ~~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l~~  202 (316)
                      .+  .+.++....+..++++||+++.|+++|.+.+.++..
T Consensus       290 ~e--~l~~l~~~l~~~i~~iSA~tgeGI~eL~~~L~~~l~  327 (424)
T PRK12297        290 EE--NLEEFKEKLGPKVFPISALTGQGLDELLYAVAELLE  327 (424)
T ss_pred             HH--HHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            22  222223333467899999999999999888766543

>cd04110 Rab35 Rab35 subfamily

Probab=98.32  E-value=2.7e-06  Score=75.04  Aligned_cols=98  Identities=13%  Similarity=0.094  Sum_probs=67.9

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHH-------hCCCCEEEEEEccCCCChHh--HHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW-------LGNRKRILVLNREDMISMAD--RNAWAT  170 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~-------l~~k~~IlVlNK~DLv~~~~--~~~~~~  170 (316)
                      +-++||+ .++.......+..+|.+++|+|+.++.+..  .+..+       ....|+++|.||+|+.+...  .++..+
T Consensus        59 l~D~~G~-~~~~~~~~~~~~~a~~iilv~D~~~~~s~~--~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~  135 (199)
T cd04110          59 IWDTAGQ-ERFRTITSTYYRGTHGVIVVYDVTNGESFV--NVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYK  135 (199)
T ss_pred             EEeCCCc-hhHHHHHHHHhCCCcEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHH
Confidence            4578888 555555567789999999999998754322  12222       22568999999999975432  122333


Q ss_pred             HHHhcCceEEEeccccccchhhhHHHHHHh
Q 021210          171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       171 ~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      +....+..++.+|+++|.|++++.+.+...
T Consensus       136 ~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~~  165 (199)
T cd04110         136 FAGQMGISLFETSAKENINVEEMFNCITEL  165 (199)
T ss_pred             HHHHcCCEEEEEECCCCcCHHHHHHHHHHH
Confidence            344556788999999999999988776553

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04144 Ras2 Ras2 subfamily

Probab=98.31  E-value=3.6e-06  Score=73.58  Aligned_cols=99  Identities=10%  Similarity=-0.002  Sum_probs=64.6

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHH----HHHh----CCCCEEEEEEccCCCChHh--HHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLM----DQWL----GNRKRILVLNREDMISMAD--RNAW  168 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-~~i----~~~l----~~k~~IlVlNK~DLv~~~~--~~~~  168 (316)
                      +-++||+ .++.......+..+|++|+|+|..+..+..+ ..+    ....    .+.|+++|.||+|+....+  ..+.
T Consensus        51 i~Dt~G~-~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~  129 (190)
T cd04144          51 VLDTAGQ-EEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEG  129 (190)
T ss_pred             EEECCCc-hhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHH
Confidence            3467887 4555555567899999999999876543221 111    1111    2468999999999964322  1112


Q ss_pred             HHHHHhcCceEEEeccccccchhhhHHHHHH
Q 021210          169 ATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       169 ~~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      .+.....+..++.+||++|.|++++.+.+.+
T Consensus       130 ~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~  160 (190)
T cd04144         130 AALARRLGCEFIEASAKTNVNVERAFYTLVR  160 (190)
T ss_pred             HHHHHHhCCEEEEecCCCCCCHHHHHHHHHH
Confidence            2223344677899999999999998776554

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04109 Rab28 Rab28 subfamily

Probab=98.31  E-value=3.2e-06  Score=75.51  Aligned_cols=100  Identities=18%  Similarity=0.096  Sum_probs=65.8

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHhC----CCCEEEEEEccCCCChHh--HHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG----NRKRILVLNREDMISMAD--RNAW  168 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l~----~k~~IlVlNK~DLv~~~~--~~~~  168 (316)
                      +-++||+ ..+.......+..+|++|+|+|..++.+..+.     .+.+...    +.|+++|.||+||.....  .++.
T Consensus        54 i~Dt~G~-~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~  132 (215)
T cd04109          54 VWDIGGQ-SIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKH  132 (215)
T ss_pred             EEECCCc-HHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHH
Confidence            4467787 55555566778999999999999876433221     1222221    236889999999974321  1122


Q ss_pred             HHHHHhcCceEEEeccccccchhhhHHHHHHh
Q 021210          169 ATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       169 ~~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      .++....+..++.+||++|+|++++.+.+...
T Consensus       133 ~~~~~~~~~~~~~iSAktg~gv~~lf~~l~~~  164 (215)
T cd04109         133 ARFAQANGMESCLVSAKTGDRVNLLFQQLAAE  164 (215)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            22333456678899999999999988776554

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=98.31  E-value=4.9e-06  Score=85.33  Aligned_cols=102  Identities=18%  Similarity=0.102  Sum_probs=69.7

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChHh-------------
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD-------------  164 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~-------------  164 (316)
                      +-++||| ..+.......++.+|++++|+|+.++......+...++.  +.|+++++||+|+.+...             
T Consensus        73 ~iDTpG~-e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak  151 (590)
T TIGR00491        73 FIDTPGH-EAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFMESFSK  151 (590)
T ss_pred             EEECCCc-HhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHHHHHh
Confidence            5578999 566666667789999999999999876544444433333  679999999999974210             


Q ss_pred             ----H-HHHH-------HHHHhc-------------C--ceEEEeccccccchhhhHHHHHHhhh
Q 021210          165 ----R-NAWA-------TYFAKQ-------------G--TKVIFSNGQLGMGTMKLSRLAKALAS  202 (316)
Q Consensus       165 ----~-~~~~-------~~~~~~-------------g--~~vi~iSa~~g~gi~~L~~~L~~l~~  202 (316)
                          . ..+.       ..+.+.             +  ..++++||++|+|+++|...+..+..
T Consensus       152 ~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~  216 (590)
T TIGR00491       152 QEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ  216 (590)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence                0 0000       011111             1  46899999999999999987765443

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>cd04122 Rab14 Rab14 subfamily

Probab=98.31  E-value=3.8e-06  Score=71.32  Aligned_cols=95  Identities=13%  Similarity=0.109  Sum_probs=64.4

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--------CCCCEEEEEEccCCCChHh--HHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNREDMISMAD--RNAWA  169 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--------~~k~~IlVlNK~DLv~~~~--~~~~~  169 (316)
                      +-++||+ .++.......++.+|.+|+|+|..++.+..  .+..++        .+.|+++|.||+|+....+  .++..
T Consensus        55 i~Dt~G~-~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~  131 (166)
T cd04122          55 IWDTAGQ-ERFRAVTRSYYRGAAGALMVYDITRRSTYN--HLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAK  131 (166)
T ss_pred             EEECCCc-HHHHHHHHHHhcCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHH
Confidence            3467887 556666667889999999999998754322  122222        2468999999999965432  12222


Q ss_pred             HHHHhcCceEEEeccccccchhhhHHHH
Q 021210          170 TYFAKQGTKVIFSNGQLGMGTMKLSRLA  197 (316)
Q Consensus       170 ~~~~~~g~~vi~iSa~~g~gi~~L~~~L  197 (316)
                      +...+.+..++.+||++|.|++++...+
T Consensus       132 ~~~~~~~~~~~e~Sa~~~~~i~e~f~~l  159 (166)
T cd04122         132 QFADENGLLFLECSAKTGENVEDAFLET  159 (166)
T ss_pred             HHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence            3334456788999999999998875443

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04113 Rab4 Rab4 subfamily

Probab=98.30  E-value=3.8e-06  Score=70.68  Aligned_cols=98  Identities=13%  Similarity=0.037  Sum_probs=67.7

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHH--h--CCCCEEEEEEccCCCChHh--HHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQW--L--GNRKRILVLNREDMISMAD--RNAWATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~--l--~~k~~IlVlNK~DLv~~~~--~~~~~~~  171 (316)
                      +-++||| .++.......++.+|.+++|+|+.++.+..+  ..+...  +  .+.|+++|.||+|+....+  .++....
T Consensus        53 l~D~~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~  131 (161)
T cd04113          53 IWDTAGQ-ERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRF  131 (161)
T ss_pred             EEECcch-HHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHH
Confidence            5567888 5666666777899999999999987543322  111211  1  2578999999999975322  2233334


Q ss_pred             HHhcCceEEEeccccccchhhhHHHHH
Q 021210          172 FAKQGTKVIFSNGQLGMGTMKLSRLAK  198 (316)
Q Consensus       172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~  198 (316)
                      ....+..++.+|++++.|++++.+.+.
T Consensus       132 ~~~~~~~~~~~Sa~~~~~i~~~~~~~~  158 (161)
T cd04113         132 AQENGLLFLETSALTGENVEEAFLKCA  158 (161)
T ss_pred             HHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            455667899999999999998876543

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd01868 Rab11_like Rab11-like

Probab=98.30  E-value=3.9e-06  Score=70.90  Aligned_cols=96  Identities=15%  Similarity=0.112  Sum_probs=65.0

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-------C-CCCEEEEEEccCCCChHh--HHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-------G-NRKRILVLNREDMISMAD--RNAWA  169 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l-------~-~k~~IlVlNK~DLv~~~~--~~~~~  169 (316)
                      +-+.||+ .++.......+..+|.+|+|+|+.++.+..  .+..++       . +.|+++|.||+|+....+  .++..
T Consensus        56 l~D~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~  132 (165)
T cd01868          56 IWDTAGQ-ERYRAITSAYYRGAVGALLVYDITKKQTFE--NVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAK  132 (165)
T ss_pred             EEeCCCh-HHHHHHHHHHHCCCCEEEEEEECcCHHHHH--HHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHH
Confidence            4467876 455555567789999999999998654322  122221       1 478999999999975322  22233


Q ss_pred             HHHHhcCceEEEeccccccchhhhHHHHH
Q 021210          170 TYFAKQGTKVIFSNGQLGMGTMKLSRLAK  198 (316)
Q Consensus       170 ~~~~~~g~~vi~iSa~~g~gi~~L~~~L~  198 (316)
                      ++....+..++.+||++|.|++++.+.+.
T Consensus       133 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  161 (165)
T cd01868         133 AFAEKNGLSFIETSALDGTNVEEAFKQLL  161 (165)
T ss_pred             HHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            33444567789999999999998877654

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04155 Arl3 Arl3 subfamily

Probab=98.29  E-value=1.1e-06  Score=74.94  Aligned_cols=56  Identities=23%  Similarity=0.294  Sum_probs=40.1

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEeCCcEEEEeCCCcc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGII  273 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~~~~~~liDTPGi~  273 (316)
                      ..+|+++|.+|+|||||+|+|.+.......+..|.+.....+ .+..+.++||||..
T Consensus        14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~-~~~~~~~~D~~G~~   69 (173)
T cd04155          14 EPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQS-DGFKLNVWDIGGQR   69 (173)
T ss_pred             ccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEE-CCEEEEEEECCCCH
Confidence            578999999999999999999987544444444544332211 24568899999974

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=98.29  E-value=5.7e-07  Score=77.21  Aligned_cols=56  Identities=29%  Similarity=0.401  Sum_probs=38.9

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccC---------------CCCCceeeEEEEEe---CCcEEEEeCCCccc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAA---------------PRPGVTRVLKWVRF---GKDLEFLDSPGIIP  274 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs---------------~~pgtT~~~~~~~~---~~~~~liDTPGi~~  274 (316)
                      +|+++|.+|+|||||+|+|.+.......               ...|+|.+......   ...+.++||||...
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~   74 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHED   74 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHH
Confidence            3899999999999999999876543321               22456655432222   34688999999753

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd04123 Rab21 Rab21 subfamily

Probab=98.29  E-value=4.4e-06  Score=69.70  Aligned_cols=99  Identities=18%  Similarity=0.064  Sum_probs=65.4

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHhC-CCCEEEEEEccCCCChHh--HHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG-NRKRILVLNREDMISMAD--RNAWATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l~-~k~~IlVlNK~DLv~~~~--~~~~~~~  171 (316)
                      +-+.||+ ..+.......+..+|.+++|+|..++.+....     .+..... +.|+++|+||+|+....+  .++..+.
T Consensus        53 ~~D~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~  131 (162)
T cd04123          53 IWDTAGQ-ERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEY  131 (162)
T ss_pred             EEECCch-HHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHH
Confidence            3456776 44444444567899999999998765432111     1222222 578999999999975332  2233344


Q ss_pred             HHhcCceEEEeccccccchhhhHHHHHH
Q 021210          172 FAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      ....+..++++|+++|.|++++.+.+..
T Consensus       132 ~~~~~~~~~~~s~~~~~gi~~~~~~l~~  159 (162)
T cd04123         132 AKSVGAKHFETSAKTGKGIEELFLSLAK  159 (162)
T ss_pred             HHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            4555677899999999999998877643

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=98.29  E-value=8.8e-07  Score=74.40  Aligned_cols=53  Identities=21%  Similarity=0.357  Sum_probs=37.2

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEeC--CcEEEEeCCCcc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFG--KDLEFLDSPGII  273 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~~--~~~~liDTPGi~  273 (316)
                      +|+++|.+|||||||+|++.+.......+..|.+.  ..+..+  ..+.++||||..
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~l~i~D~~G~~   55 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNV--EMLQLEKHLSLTVWDVGGQE   55 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcce--EEEEeCCceEEEEEECCCCH
Confidence            47999999999999999999876544433333332  222232  358899999975

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=98.29  E-value=6.7e-07  Score=88.26  Aligned_cols=58  Identities=28%  Similarity=0.371  Sum_probs=43.8

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCccccc------------------------------CCCCCceeeEEEEEe---CC
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPA------------------------------APRPGVTRVLKWVRF---GK  262 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~v------------------------------s~~pgtT~~~~~~~~---~~  262 (316)
                      ..++|+++|.+|+|||||+|+|+.......                              ...+|+|++.....+   +.
T Consensus         5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~   84 (425)
T PRK12317          5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY   84 (425)
T ss_pred             CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence            357899999999999999999985432211                              115899999765554   44


Q ss_pred             cEEEEeCCCcc
Q 021210          263 DLEFLDSPGII  273 (316)
Q Consensus       263 ~~~liDTPGi~  273 (316)
                      .+.|+||||..
T Consensus        85 ~i~liDtpG~~   95 (425)
T PRK12317         85 YFTIVDCPGHR   95 (425)
T ss_pred             EEEEEECCCcc
Confidence            68999999964

>cd04136 Rap_like Rap-like subfamily

Probab=98.28  E-value=3.6e-06  Score=70.63  Aligned_cols=98  Identities=11%  Similarity=-0.085  Sum_probs=62.6

Q ss_pred             ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHh--CCCCEEEEEEccCCCChHh--HHHHHHH
Q 021210          101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL--GNRKRILVLNREDMISMAD--RNAWATY  171 (316)
Q Consensus       101 ~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l--~~k~~IlVlNK~DLv~~~~--~~~~~~~  171 (316)
                      -++||. .++.......+..+|.+++|+|..++.+..+.     .+.+..  .+.|+++|.||+|+.+...  .++..+.
T Consensus        54 ~Dt~G~-~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  132 (163)
T cd04136          54 LDTAGT-EQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQAL  132 (163)
T ss_pred             EECCCc-cccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHH
Confidence            356776 44444445667899999999998765432211     111111  2579999999999975322  1111222


Q ss_pred             HHhcCceEEEeccccccchhhhHHHHHH
Q 021210          172 FAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      .+..+.+++.+||++|.|++++.+.+.+
T Consensus       133 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd04136         133 ARQWGCPFYETSAKSKINVDEVFADLVR  160 (163)
T ss_pred             HHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence            2334567899999999999988776543

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04121 Rab40 Rab40 subfamily

Probab=98.28  E-value=4.1e-06  Score=73.76  Aligned_cols=98  Identities=13%  Similarity=0.012  Sum_probs=67.2

Q ss_pred             ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHhCCCCEEEEEEccCCCChHh--HHHHHHHHH
Q 021210          101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLGNRKRILVLNREDMISMAD--RNAWATYFA  173 (316)
Q Consensus       101 ~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l~~k~~IlVlNK~DLv~~~~--~~~~~~~~~  173 (316)
                      -+++|+ .++..........+|.+|+|+|..++.+..+.     ++.....+.|+++|.||+||....+  .++..++.+
T Consensus        60 wDt~G~-~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~  138 (189)
T cd04121          60 WDTSGQ-GRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAE  138 (189)
T ss_pred             EeCCCc-HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHH
Confidence            345777 55666556778999999999999876543321     2222223679999999999964221  222333344


Q ss_pred             hcCceEEEeccccccchhhhHHHHHH
Q 021210          174 KQGTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       174 ~~g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      +.+..++.+||++|.|++++.+.+..
T Consensus       139 ~~~~~~~e~SAk~g~~V~~~F~~l~~  164 (189)
T cd04121         139 RNGMTFFEVSPLCNFNITESFTELAR  164 (189)
T ss_pred             HcCCEEEEecCCCCCCHHHHHHHHHH
Confidence            56778999999999999998776554

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=98.28  E-value=3.3e-06  Score=75.13  Aligned_cols=99  Identities=12%  Similarity=-0.058  Sum_probs=66.2

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHhCCCCEEEEEEccCCCChHhHHHHHHHHHh
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLGNRKRILVLNREDMISMADRNAWATYFAK  174 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l~~k~~IlVlNK~DLv~~~~~~~~~~~~~~  174 (316)
                      +-+++|+ .++..........+|++|+|+|..+..+..+.     ++.+...+.|+++|.||+||.......+..++...
T Consensus        48 iwDt~G~-e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~  126 (200)
T smart00176       48 VWDTAGQ-EKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSITFHRK  126 (200)
T ss_pred             EEECCCc-hhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHHHHHHHH
Confidence            4456787 55555555678999999999999876443221     12222236799999999998643211122233344


Q ss_pred             cCceEEEeccccccchhhhHHHHHH
Q 021210          175 QGTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       175 ~g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      .+..++.+||+.|.|++++...+..
T Consensus       127 ~~~~~~e~SAk~~~~v~~~F~~l~~  151 (200)
T smart00176      127 KNLQYYDISAKSNYNFEKPFLWLAR  151 (200)
T ss_pred             cCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            5678899999999999988776543

Ran is involved in the active transport of proteins through nuclear pores.

>cd04140 ARHI_like ARHI subfamily

Probab=98.28  E-value=3.5e-06  Score=71.57  Aligned_cols=100  Identities=12%  Similarity=-0.026  Sum_probs=64.3

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HH----HHHHh----CCCCEEEEEEccCCCChHhH--HHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PL----MDQWL----GNRKRILVLNREDMISMADR--NAW  168 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-~~----i~~~l----~~k~~IlVlNK~DLv~~~~~--~~~  168 (316)
                      +-++||+ .++.......+..+|.+|+|+|..++.+..+ ..    +.+..    .+.|+++|.||+|+....+.  ++.
T Consensus        53 i~Dt~G~-~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~  131 (165)
T cd04140          53 ITDTTGS-HQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEG  131 (165)
T ss_pred             EEECCCC-CcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHH
Confidence            4456776 3344434456789999999999987654322 11    21221    24699999999999753221  111


Q ss_pred             HHHHHhcCceEEEeccccccchhhhHHHHHHh
Q 021210          169 ATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       169 ~~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      ..+....+..++.+||++|.|++++.+.+.++
T Consensus       132 ~~~~~~~~~~~~e~SA~~g~~v~~~f~~l~~~  163 (165)
T cd04140         132 AACATEWNCAFMETSAKTNHNVQELFQELLNL  163 (165)
T ss_pred             HHHHHHhCCcEEEeecCCCCCHHHHHHHHHhc
Confidence            22233345678999999999999988876554

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=98.28  E-value=1.1e-06  Score=73.76  Aligned_cols=55  Identities=25%  Similarity=0.342  Sum_probs=36.8

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee--EEEEEeC---CcEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFG---KDLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~--~~~~~~~---~~~~liDTPGi~  273 (316)
                      ++|+++|.+|||||||+|+|.+..... ...|.++.+  ...+..+   -.+.++||||..
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~   60 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVS-KYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHP   60 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECCeEEEEEEEECCccH
Confidence            479999999999999999999776322 333333322  2223322   247899999963

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.28  E-value=4.6e-06  Score=82.99  Aligned_cols=155  Identities=16%  Similarity=0.096  Sum_probs=92.7

Q ss_pred             ccccccCCCCCeeEEecC-CCCCcCCCCCC-CCCCCcchhhhhhcccc--CCcceEEEeccccc--cccccchHHHHHHH
Q 021210           40 SLSSSLSSSAPIIQTVGG-KQSSWHGGNSN-NSNGSIEAYEEECDWAD--LDADLYYWTKSLRP--VQWYPGHIAKTEKE  113 (316)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~g~~~e~e~~~~--~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~  113 (316)
                      +.|..+-.+||-+.|.|- .++---  -+| +++-+.  -+.|-=++|  +.+=.+-+. .-++  +-++|||+  ++..
T Consensus       144 a~p~~l~~RpPVVTiMGHVDHGKTT--LLD~lRks~V--AA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHa--AF~a  216 (683)
T KOG1145|consen  144 ADPKLLEPRPPVVTIMGHVDHGKTT--LLDALRKSSV--AAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHA--AFSA  216 (683)
T ss_pred             cCHhhcCCCCCeEEEeecccCChhh--HHHHHhhCce--ehhhcCCccceeceEEEecC-CCCEEEEecCCcHH--HHHH
Confidence            345667789999999886 432100  011 111100  112222333  222122222 2222  45789995  3444


Q ss_pred             HH-HHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChHhHHHHHHHHHhcC---------ceEEE
Q 021210          114 LK-DQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQG---------TKVIF  181 (316)
Q Consensus       114 l~-~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g---------~~vi~  181 (316)
                      |+ ..+.-+|+|++||.+.++....-.+.....+  +.|+++++||||.-... .+.....+...|         ..+++
T Consensus       217 MRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~-pekv~~eL~~~gi~~E~~GGdVQvip  295 (683)
T KOG1145|consen  217 MRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGAN-PEKVKRELLSQGIVVEDLGGDVQVIP  295 (683)
T ss_pred             HHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCC-HHHHHHHHHHcCccHHHcCCceeEEE
Confidence            55 6688899999999999988665444333333  78999999999965332 233333343333         46899


Q ss_pred             eccccccchhhhHHHHHHhhh
Q 021210          182 SNGQLGMGTMKLSRLAKALAS  202 (316)
Q Consensus       182 iSa~~g~gi~~L~~~L~~l~~  202 (316)
                      +||++|+|++.|.+.+.-++.
T Consensus       296 iSAl~g~nl~~L~eaill~Ae  316 (683)
T KOG1145|consen  296 ISALTGENLDLLEEAILLLAE  316 (683)
T ss_pred             eecccCCChHHHHHHHHHHHH
Confidence            999999999999887765544

>PRK00007 elongation factor G; Reviewed

Probab=98.27  E-value=5.7e-06  Score=86.60  Aligned_cols=116  Identities=13%  Similarity=0.010  Sum_probs=82.7

Q ss_pred             CCCCcchhhhhhccccCCcceEEEecccc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC-
Q 021210           70 SNGSIEAYEEECDWADLDADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG-  146 (316)
Q Consensus        70 ~~~~~g~~~e~e~~~~~d~~~~~~~~~~~--~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~-  146 (316)
                      ..++|-...|++.+++++.....|...-.  .+-++||| .++..++...+..+|++++|+|+..+.......+..++. 
T Consensus        47 ~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~-~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~  125 (693)
T PRK00007         47 AATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGH-VDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADK  125 (693)
T ss_pred             cccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCc-HHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHH
Confidence            45777778899999999987775544333  37789999 457778889999999999999999887766666655543 


Q ss_pred             -CCCEEEEEEccCCCChHhHHHHHHHHHh-cC----ceEEEeccccc
Q 021210          147 -NRKRILVLNREDMISMADRNAWATYFAK-QG----TKVIFSNGQLG  187 (316)
Q Consensus       147 -~k~~IlVlNK~DLv~~~~~~~~~~~~~~-~g----~~vi~iSa~~g  187 (316)
                       ++|.++++||+|+.+.. .....+.+++ .+    ...+++|+..+
T Consensus       126 ~~~p~iv~vNK~D~~~~~-~~~~~~~i~~~l~~~~~~~~ipisa~~~  171 (693)
T PRK00007        126 YKVPRIAFVNKMDRTGAD-FYRVVEQIKDRLGANPVPIQLPIGAEDD  171 (693)
T ss_pred             cCCCEEEEEECCCCCCCC-HHHHHHHHHHHhCCCeeeEEecCccCCc
Confidence             68999999999998543 2222233322 22    23456776554

>cd01866 Rab2 Rab2 subfamily

Probab=98.27  E-value=5.4e-06  Score=70.67  Aligned_cols=97  Identities=11%  Similarity=0.073  Sum_probs=66.6

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--------CCCCEEEEEEccCCCChHh--HHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNREDMISMAD--RNAWA  169 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--------~~k~~IlVlNK~DLv~~~~--~~~~~  169 (316)
                      +-++||+ .++.......++.+|++++|+|+.++.+..  .+..++        .+.|+++|.||+|+.+...  .++..
T Consensus        57 i~Dt~G~-~~~~~~~~~~~~~~d~il~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~  133 (168)
T cd01866          57 IWDTAGQ-ESFRSITRSYYRGAAGALLVYDITRRETFN--HLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGE  133 (168)
T ss_pred             EEECCCc-HHHHHHHHHHhccCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHH
Confidence            4556887 556665667789999999999998644322  222222        2568999999999974322  22233


Q ss_pred             HHHHhcCceEEEeccccccchhhhHHHHHH
Q 021210          170 TYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       170 ~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      .+..+.+..++++|++.+.|++++...+.+
T Consensus       134 ~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~  163 (168)
T cd01866         134 AFAKEHGLIFMETSAKTASNVEEAFINTAK  163 (168)
T ss_pred             HHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            344556778899999999999987765543

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd01860 Rab5_related Rab5-related subfamily

Probab=98.27  E-value=5.2e-06  Score=69.75  Aligned_cols=98  Identities=15%  Similarity=0.017  Sum_probs=65.1

Q ss_pred             ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHH-HHHh----CCCCEEEEEEccCCCChH--hHHHHHHHH
Q 021210          101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLM-DQWL----GNRKRILVLNREDMISMA--DRNAWATYF  172 (316)
Q Consensus       101 ~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-~~i-~~~l----~~k~~IlVlNK~DLv~~~--~~~~~~~~~  172 (316)
                      -++||+ .++.......++.+|.+++|+|+.++.+... ..+ ..+.    ...|++++.||+|+.+..  ..++..+..
T Consensus        55 ~D~~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~  133 (163)
T cd01860          55 WDTAGQ-ERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYA  133 (163)
T ss_pred             EeCCch-HHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHH
Confidence            357887 4455555567889999999999986542211 111 1111    245799999999987432  223333444


Q ss_pred             HhcCceEEEeccccccchhhhHHHHHH
Q 021210          173 AKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       173 ~~~g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      ...+..++.+|+++|.|+.++.+.+.+
T Consensus       134 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd01860         134 DENGLLFFETSAKTGENVNELFTEIAK  160 (163)
T ss_pred             HHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            555678999999999999998776543

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04147 Ras_dva Ras-dva subfamily

Probab=98.27  E-value=4.2e-06  Score=73.69  Aligned_cols=100  Identities=9%  Similarity=-0.068  Sum_probs=63.5

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHh--CCCCEEEEEEccCCCCh-Hh--HHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL--GNRKRILVLNREDMISM-AD--RNAWA  169 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l--~~k~~IlVlNK~DLv~~-~~--~~~~~  169 (316)
                      +-+.||+ .++.......+..+|++|+|+|+.++.+..+.     .+....  .+.|+++|+||+|+.+. ..  .....
T Consensus        51 i~D~~G~-~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~  129 (198)
T cd04147          51 ILDTSGS-YSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDAL  129 (198)
T ss_pred             EEECCCc-hhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHH
Confidence            4456887 33443334567899999999998765332211     122222  25799999999999753 21  11112


Q ss_pred             HHHH-hcCceEEEeccccccchhhhHHHHHHh
Q 021210          170 TYFA-KQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       170 ~~~~-~~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      +.+. ..+..++.+||++|.|++++.+.+...
T Consensus       130 ~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  161 (198)
T cd04147         130 STVELDWNCGFVETSAKDNENVLEVFKELLRQ  161 (198)
T ss_pred             HHHHhhcCCcEEEecCCCCCCHHHHHHHHHHH
Confidence            2222 234567899999999999998876553

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd00876 Ras Ras family

Probab=98.27  E-value=5.8e-06  Score=68.83  Aligned_cols=98  Identities=12%  Similarity=-0.004  Sum_probs=66.6

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHhC--CCCEEEEEEccCCCChHh--HHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWLG--NRKRILVLNREDMISMAD--RNAWAT  170 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l~--~k~~IlVlNK~DLv~~~~--~~~~~~  170 (316)
                      +-++||+ .++.......++.+|++++|+|..++.+..+     ..+.....  ..|+++|+||+|+.+...  .+...+
T Consensus        51 l~D~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~  129 (160)
T cd00876          51 ILDTAGQ-EEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKA  129 (160)
T ss_pred             EEECCCh-HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHH
Confidence            5678998 4455556677899999999999876532211     11222222  689999999999976321  122233


Q ss_pred             HHHhcCceEEEeccccccchhhhHHHHH
Q 021210          171 YFAKQGTKVIFSNGQLGMGTMKLSRLAK  198 (316)
Q Consensus       171 ~~~~~g~~vi~iSa~~g~gi~~L~~~L~  198 (316)
                      ...+.+..++.+|++.+.|++++.+.|.
T Consensus       130 ~~~~~~~~~~~~S~~~~~~i~~l~~~l~  157 (160)
T cd00876         130 LAKEWGCPFIETSAKDNINIDEVFKLLV  157 (160)
T ss_pred             HHHHcCCcEEEeccCCCCCHHHHHHHHH
Confidence            3444557789999999999999877654

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>PRK12739 elongation factor G; Reviewed

Probab=98.27  E-value=6e-06  Score=86.41  Aligned_cols=92  Identities=16%  Similarity=0.098  Sum_probs=73.2

Q ss_pred             CCCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC-
Q 021210           70 SNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG-  146 (316)
Q Consensus        70 ~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~-  146 (316)
                      ..++|-...|++.+++++.....|...-..  +-++|||. ++..++...+..+|++|+|+|+..+.......+..++. 
T Consensus        45 ~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~-~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~  123 (691)
T PRK12739         45 AATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV-DFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADK  123 (691)
T ss_pred             ccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH-HHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            456777788999999999988866554443  67899994 57778889999999999999999887665555555443 


Q ss_pred             -CCCEEEEEEccCCCCh
Q 021210          147 -NRKRILVLNREDMISM  162 (316)
Q Consensus       147 -~k~~IlVlNK~DLv~~  162 (316)
                       ++|.|+++||+|+...
T Consensus       124 ~~~p~iv~iNK~D~~~~  140 (691)
T PRK12739        124 YGVPRIVFVNKMDRIGA  140 (691)
T ss_pred             cCCCEEEEEECCCCCCC
Confidence             6899999999999854

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=98.26  E-value=1e-06  Score=85.71  Aligned_cols=59  Identities=20%  Similarity=0.392  Sum_probs=47.7

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcC----ccc-----------ccCCCCC---ceeeEEE-------EEeC----CcEEEE
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKR----RMC-----------PAAPRPG---VTRVLKW-------VRFG----KDLEFL  267 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~----~~~-----------~vs~~pg---tT~~~~~-------~~~~----~~~~li  267 (316)
                      .+.|+++|..|+|||||||++.+.    +..           .++..+|   ||++..+       +...    .++.|+
T Consensus        17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI   96 (492)
T TIGR02836        17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV   96 (492)
T ss_pred             cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence            578999999999999999999987    555           5788899   8988654       2223    468999


Q ss_pred             eCCCcccC
Q 021210          268 DSPGIIPM  275 (316)
Q Consensus       268 DTPGi~~~  275 (316)
                      ||+|+...
T Consensus        97 DcvG~~v~  104 (492)
T TIGR02836        97 DCVGYTVK  104 (492)
T ss_pred             ECCCcccC
Confidence            99999743

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=98.26  E-value=1.2e-06  Score=73.60  Aligned_cols=54  Identities=22%  Similarity=0.233  Sum_probs=37.7

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~  273 (316)
                      +||+++|.+|||||||+|++.+...  ++..+.++.+.  ....++.   .+.++||||..
T Consensus         3 ~ki~i~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~   61 (164)
T cd04145           3 YKLVVVGGGGVGKSALTIQFIQSYF--VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQE   61 (164)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceEEEEEEECCEEEEEEEEECCCCc
Confidence            6899999999999999999987542  34444555432  1222322   36789999965

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=98.25  E-value=9.2e-07  Score=74.81  Aligned_cols=56  Identities=21%  Similarity=0.205  Sum_probs=36.3

Q ss_pred             EEeEeccCCCCcchhHHhhhcCccc---ccCCCCCceeeE--EEEEe-CCcEEEEeCCCccc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMC---PAAPRPGVTRVL--KWVRF-GKDLEFLDSPGIIP  274 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~---~vs~~pgtT~~~--~~~~~-~~~~~liDTPGi~~  274 (316)
                      +|+++|.+|+|||||+|+|.+....   .......+|...  ..+.. +..+.++||||...
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~   62 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQES   62 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChh
Confidence            4799999999999999999864321   111122334332  22333 34688999999753

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=98.25  E-value=3.1e-06  Score=73.74  Aligned_cols=99  Identities=10%  Similarity=0.013  Sum_probs=63.0

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC--CcHHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST--THPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF  172 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~--~~~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~  172 (316)
                      +-++||+ .++.......+..+|++|+|+|+.+..+.  ....+.+.+     .+.|+++|.||+|+.......+..+.+
T Consensus        65 l~D~~G~-~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l  143 (182)
T PTZ00133         65 MWDVGGQ-DKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKL  143 (182)
T ss_pred             EEECCCC-HhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHh
Confidence            4567887 45555556678999999999999764321  122333333     247899999999986432222222222


Q ss_pred             Hh-----cCceEEEeccccccchhhhHHHHHH
Q 021210          173 AK-----QGTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       173 ~~-----~g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      ..     ....++.+||++|.|++++.+.|.+
T Consensus       144 ~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~  175 (182)
T PTZ00133        144 GLHSVRQRNWYIQGCCATTAQGLYEGLDWLSA  175 (182)
T ss_pred             CCCcccCCcEEEEeeeCCCCCCHHHHHHHHHH
Confidence            11     1123456899999999998877654

>cd01863 Rab18 Rab18 subfamily

Probab=98.25  E-value=5.2e-06  Score=69.74  Aligned_cols=98  Identities=14%  Similarity=0.048  Sum_probs=64.8

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHh--CCCCEEEEEEccCCCChH-hHHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL--GNRKRILVLNREDMISMA-DRNAWATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l--~~k~~IlVlNK~DLv~~~-~~~~~~~~  171 (316)
                      +-++||+ .++.......++.+|.+++|+|+.++.+....     .+..+.  .+.|+++|.||+|+.... ..++..+.
T Consensus        53 l~D~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~  131 (161)
T cd01863          53 IWDTAGQ-ERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKF  131 (161)
T ss_pred             EEECCCc-hhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHH
Confidence            3467886 45555556678899999999998765432211     111221  256899999999997332 22223333


Q ss_pred             HHhcCceEEEeccccccchhhhHHHHH
Q 021210          172 FAKQGTKVIFSNGQLGMGTMKLSRLAK  198 (316)
Q Consensus       172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~  198 (316)
                      ....+..++++|+++|.|++++.+.+.
T Consensus       132 ~~~~~~~~~~~Sa~~~~gi~~~~~~~~  158 (161)
T cd01863         132 ARKHNMLFIETSAKTRDGVQQAFEELV  158 (161)
T ss_pred             HHHcCCEEEEEecCCCCCHHHHHHHHH
Confidence            344567799999999999998876643

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04175 Rap1 Rap1 subgroup

Probab=98.25  E-value=4.8e-06  Score=70.38  Aligned_cols=98  Identities=12%  Similarity=-0.009  Sum_probs=64.2

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh-----CCCCEEEEEEccCCCChHh--HHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL-----GNRKRILVLNREDMISMAD--RNAWAT  170 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~~~l-----~~k~~IlVlNK~DLv~~~~--~~~~~~  170 (316)
                      +-++||+ .++.......+..+|.+++|+|..+..+..+.  .+..+.     .+.|+++|.||+|+.+...  .+...+
T Consensus        53 i~Dt~G~-~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~  131 (164)
T cd04175          53 ILDTAGT-EQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQN  131 (164)
T ss_pred             EEECCCc-ccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHH
Confidence            4466887 45555555678999999999998754332211  111111     2579999999999975321  111122


Q ss_pred             HHHhcCceEEEeccccccchhhhHHHHH
Q 021210          171 YFAKQGTKVIFSNGQLGMGTMKLSRLAK  198 (316)
Q Consensus       171 ~~~~~g~~vi~iSa~~g~gi~~L~~~L~  198 (316)
                      ..++.+.+++.+||++|.|++++...+.
T Consensus       132 ~~~~~~~~~~~~Sa~~~~~v~~~~~~l~  159 (164)
T cd04175         132 LARQWGCAFLETSAKAKINVNEIFYDLV  159 (164)
T ss_pred             HHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence            2344567899999999999999877654

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=98.25  E-value=1.3e-06  Score=73.39  Aligned_cols=54  Identities=20%  Similarity=0.314  Sum_probs=38.5

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCccc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGIIP  274 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~~  274 (316)
                      ||+++|.+|||||||+|++.+.......+..|.+...  +.. +..+.++||||...
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~i~D~~G~~~   55 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVET--VEYKNVSFTVWDVGGQDK   55 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEE--EEECCEEEEEEECCCChh
Confidence            4899999999999999999987643333334444332  222 34689999999754

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>PRK04213 GTP-binding protein; Provisional

Probab=98.25  E-value=1e-05  Score=71.00  Aligned_cols=83  Identities=14%  Similarity=0.077  Sum_probs=52.3

Q ss_pred             HHhhcCeEEEEEeCCCCCCC-----------CcHHHHHHh--CCCCEEEEEEccCCCChH--hHHHHHHHHHhc------
Q 021210          117 QLKLMDVVIEVRDARIPLST-----------THPLMDQWL--GNRKRILVLNREDMISMA--DRNAWATYFAKQ------  175 (316)
Q Consensus       117 ~i~~aDlIl~VvDar~~~~~-----------~~~~i~~~l--~~k~~IlVlNK~DLv~~~--~~~~~~~~~~~~------  175 (316)
                      .+..+|++++|+|+......           .+..+...+  .+.|+++|+||+|+.+..  ...++.+.+.-.      
T Consensus        87 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  166 (201)
T PRK04213         87 NADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYPPWRQW  166 (201)
T ss_pred             hhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcHHHHHHHHHHHhcCCcccccc
Confidence            34567899999998653211           112223332  378999999999997544  222333222110      


Q ss_pred             CceEEEeccccccchhhhHHHHHHh
Q 021210          176 GTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       176 g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      +..++++||++| |++++.+.|...
T Consensus       167 ~~~~~~~SA~~g-gi~~l~~~l~~~  190 (201)
T PRK04213        167 QDIIAPISAKKG-GIEELKEAIRKR  190 (201)
T ss_pred             CCcEEEEecccC-CHHHHHHHHHHh
Confidence            124789999999 999988876553

>smart00175 RAB Rab subfamily of small GTPases

Probab=98.25  E-value=1.9e-06  Score=72.31  Aligned_cols=55  Identities=22%  Similarity=0.333  Sum_probs=36.9

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee--EEEEEeCC---cEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~--~~~~~~~~---~~~liDTPGi~  273 (316)
                      +||+++|.+|+|||||+|++.+.+. .....+.++.+  ...+..+.   .+.++||||..
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~   60 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKF-SEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE   60 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCChH
Confidence            4799999999999999999997753 22223333322  22333332   46799999953

Rab GTPases are implicated in vesicle trafficking.

>PTZ00369 Ras-like protein; Provisional

Probab=98.24  E-value=4.1e-06  Score=73.15  Aligned_cols=99  Identities=10%  Similarity=-0.062  Sum_probs=64.7

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHhC--CCCEEEEEEccCCCChHh--HHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWLG--NRKRILVLNREDMISMAD--RNAWAT  170 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l~--~k~~IlVlNK~DLv~~~~--~~~~~~  170 (316)
                      +-++||+ .++.......+..+|++++|+|..++.+..+     ..+.+...  +.|+++|.||+|+.+...  ..+..+
T Consensus        57 i~Dt~G~-~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~  135 (189)
T PTZ00369         57 ILDTAGQ-EEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQE  135 (189)
T ss_pred             EEeCCCC-ccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHH
Confidence            3467887 4555555567889999999999987643211     11222222  568999999999864321  112222


Q ss_pred             HHHhcCceEEEeccccccchhhhHHHHHH
Q 021210          171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       171 ~~~~~g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      .....+.+++.+||++|.|++++.+.+.+
T Consensus       136 ~~~~~~~~~~e~Sak~~~gi~~~~~~l~~  164 (189)
T PTZ00369        136 LAKSFGIPFLETSAKQRVNVDEAFYELVR  164 (189)
T ss_pred             HHHHhCCEEEEeeCCCCCCHHHHHHHHHH
Confidence            33344567899999999999988766543

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=98.24  E-value=7.9e-07  Score=75.87  Aligned_cols=48  Identities=25%  Similarity=0.346  Sum_probs=32.8

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEeCCcEEEEeCCCcccC
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPM  275 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~~~~~~liDTPGi~~~  275 (316)
                      +|+++|.+|||||||+|+|.+....     ...|....+   ... .++||||....
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~~-----~~~~~~v~~---~~~-~~iDtpG~~~~   50 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYTL-----ARKTQAVEF---NDK-GDIDTPGEYFS   50 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCcc-----CccceEEEE---CCC-CcccCCccccC
Confidence            5899999999999999999876421     123333322   111 27999998543

>cd04157 Arl6 Arl6 subfamily

Probab=98.24  E-value=1.4e-06  Score=73.15  Aligned_cols=55  Identities=22%  Similarity=0.205  Sum_probs=37.0

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcc--cccCCCCCceeeEEEEEeCCcEEEEeCCCccc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRM--CPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIP  274 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~--~~vs~~pgtT~~~~~~~~~~~~~liDTPGi~~  274 (316)
                      +|+++|.+|||||||+|+|.+...  ....+..|.+.... ...+..+.++||||...
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~-~~~~~~~~l~Dt~G~~~   57 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESF-EKGNLSFTAFDMSGQGK   57 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEE-EECCEEEEEEECCCCHh
Confidence            479999999999999999997642  22334445443221 11233578999999753

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04114 Rab30 Rab30 subfamily

Probab=98.24  E-value=6.7e-06  Score=69.60  Aligned_cols=99  Identities=16%  Similarity=0.085  Sum_probs=65.9

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHH----HHHhC-CCCEEEEEEccCCCChHhH-HHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLM----DQWLG-NRKRILVLNREDMISMADR-NAWATYF  172 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-~~i----~~~l~-~k~~IlVlNK~DLv~~~~~-~~~~~~~  172 (316)
                      +.++||+ ..+.......+..+|++++|+|..++.+... ..+    ..+.. +.|.++|.||+|+.+..+. ....+.+
T Consensus        60 ~~D~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~  138 (169)
T cd04114          60 IWDTAGQ-ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEF  138 (169)
T ss_pred             EEECCCc-HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHH
Confidence            4577888 5566666788999999999999986543211 111    11122 4678999999999754331 2222333


Q ss_pred             Hh-cCceEEEeccccccchhhhHHHHHH
Q 021210          173 AK-QGTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       173 ~~-~g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      .+ ....++.+|+++|.|++++.+.+..
T Consensus       139 ~~~~~~~~~~~Sa~~~~gv~~l~~~i~~  166 (169)
T cd04114         139 SDAQDMYYLETSAKESDNVEKLFLDLAC  166 (169)
T ss_pred             HHHcCCeEEEeeCCCCCCHHHHHHHHHH
Confidence            33 2356889999999999988776553

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04113 Rab4 Rab4 subfamily

Probab=98.22  E-value=2.2e-06  Score=72.09  Aligned_cols=56  Identities=27%  Similarity=0.396  Sum_probs=36.0

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCccccc-CCCCCceeeEEEEEeCC---cEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~v-s~~pgtT~~~~~~~~~~---~~~liDTPGi~  273 (316)
                      +||+++|.+|||||||+|+|++...... .+..+.......+.++.   .+.++||||..
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~   60 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQE   60 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchH
Confidence            3799999999999999999997653221 12222222222233322   46799999974

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>PRK04004 translation initiation factor IF-2; Validated

Probab=98.22  E-value=9.4e-06  Score=83.34  Aligned_cols=99  Identities=17%  Similarity=0.116  Sum_probs=67.4

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCEEEEEEccCCCChHh-------------
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMAD-------------  164 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~IlVlNK~DLv~~~~-------------  164 (316)
                      +-++||| ..+.......+..+|++++|+|++++..........++  .+.|+++++||+|+.+...             
T Consensus        75 ~iDTPG~-e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~  153 (586)
T PRK04004         75 FIDTPGH-EAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFLESIEK  153 (586)
T ss_pred             EEECCCh-HHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHHHHHhh
Confidence            5678999 66776666788999999999999986544333333333  2688999999999863110             


Q ss_pred             -----HH-------HHHHHHHhcC---------------ceEEEeccccccchhhhHHHHHH
Q 021210          165 -----RN-------AWATYFAKQG---------------TKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       165 -----~~-------~~~~~~~~~g---------------~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                           ..       +...++.+.|               ..++++||.+|.|+++|.+.+..
T Consensus       154 ~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~  215 (586)
T PRK04004        154 QSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG  215 (586)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence                 00       0111222222               45899999999999988876644

>cd04118 Rab24 Rab24 subfamily

Probab=98.22  E-value=5.1e-06  Score=72.38  Aligned_cols=99  Identities=12%  Similarity=-0.005  Sum_probs=63.5

Q ss_pred             cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh----CCCCEEEEEEccCCCChHh------HHHHHH
Q 021210          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLMDQWL----GNRKRILVLNREDMISMAD------RNAWAT  170 (316)
Q Consensus       102 ~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-~~i~~~l----~~k~~IlVlNK~DLv~~~~------~~~~~~  170 (316)
                      ++||. .++.......+..+|++++|+|..++.+..+ ..+...+    .+.|+++|.||+|+.+..+      ..+..+
T Consensus        56 D~~G~-~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~  134 (193)
T cd04118          56 DTAGS-ERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQD  134 (193)
T ss_pred             ECCCc-hhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHH
Confidence            45676 3343333455779999999999976533221 1112222    2579999999999864321      122223


Q ss_pred             HHHhcCceEEEeccccccchhhhHHHHHHhh
Q 021210          171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (316)
Q Consensus       171 ~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l~  201 (316)
                      +....+..++.+||++|.|+++|.+.+.+..
T Consensus       135 ~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~  165 (193)
T cd04118         135 FADEIKAQHFETSSKTGQNVDELFQKVAEDF  165 (193)
T ss_pred             HHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            3344457788999999999999988776543

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=98.22  E-value=3.5e-06  Score=71.41  Aligned_cols=99  Identities=13%  Similarity=0.070  Sum_probs=63.3

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHh---CCCCEEEEEEccCCCChHh--HHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWL---GNRKRILVLNREDMISMAD--RNAWA  169 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l---~~k~~IlVlNK~DLv~~~~--~~~~~  169 (316)
                      +-++||+...........+..+|++|+|+|+.++.+..+     ..+....   .+.|+++|.||+|+.....  .++..
T Consensus        51 i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~  130 (165)
T cd04146          51 ILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGE  130 (165)
T ss_pred             EEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHH
Confidence            456788743223345567889999999999987643221     1122221   2678999999999854321  12222


Q ss_pred             HHHHhcCceEEEeccccc-cchhhhHHHHH
Q 021210          170 TYFAKQGTKVIFSNGQLG-MGTMKLSRLAK  198 (316)
Q Consensus       170 ~~~~~~g~~vi~iSa~~g-~gi~~L~~~L~  198 (316)
                      +..+..+..++.+|+++| .|++++.+.+.
T Consensus       131 ~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l~  160 (165)
T cd04146         131 KLASELGCLFFEVSAAEDYDGVHSVFHELC  160 (165)
T ss_pred             HHHHHcCCEEEEeCCCCCchhHHHHHHHHH
Confidence            333345677899999999 48888876554

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=98.22  E-value=2.7e-06  Score=72.42  Aligned_cols=56  Identities=18%  Similarity=0.275  Sum_probs=37.5

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCC--ceeeEEEEEeCC---cEEEEeCCCcc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG--VTRVLKWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pg--tT~~~~~~~~~~---~~~liDTPGi~  273 (316)
                      .+||+++|.+|||||||+|++.+... .....|.  ++.....+..+.   .+.++||||..
T Consensus         3 ~~ki~vvG~~~~GKSsl~~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~   63 (167)
T cd01867           3 LFKLLLIGDSGVGKSCLLLRFSEDSF-NPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE   63 (167)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCcC-CcccccCccceEEEEEEEECCEEEEEEEEeCCchH
Confidence            36899999999999999999997652 2222332  322223333332   46799999964

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04118 Rab24 Rab24 subfamily

Probab=98.21  E-value=2.2e-06  Score=74.68  Aligned_cols=55  Identities=27%  Similarity=0.448  Sum_probs=37.0

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee---EEEEEeCC---cEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV---LKWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~---~~~~~~~~---~~~liDTPGi~  273 (316)
                      +||+++|.+|||||||+|++.+... ..+....|+..   ...+.++.   .+.++||||..
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~   61 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRF-LVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE   61 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCc-CCcCcccceeeEEEEEEEEECCEEEEEEEEECCCch
Confidence            3799999999999999999997653 33333333322   22334432   35699999974

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=98.21  E-value=3.2e-06  Score=72.22  Aligned_cols=95  Identities=13%  Similarity=-0.036  Sum_probs=60.5

Q ss_pred             cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh---CCCCEEEEEEccCCCChHhHHHHHHH-----
Q 021210          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL---GNRKRILVLNREDMISMADRNAWATY-----  171 (316)
Q Consensus       102 ~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l---~~k~~IlVlNK~DLv~~~~~~~~~~~-----  171 (316)
                      ++||+ .++.......+..+|.+|+|+|+.++.+..  ...+..++   .+.|+++|.||+|+.......+..+.     
T Consensus        50 Dt~G~-~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~  128 (164)
T cd04162          50 EIGGS-QNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEP  128 (164)
T ss_pred             ECCCC-cchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChh
Confidence            56777 445554556799999999999998754221  11233333   36799999999998654332222211     


Q ss_pred             H-HhcCceEEEecccc------ccchhhhHHHH
Q 021210          172 F-AKQGTKVIFSNGQL------GMGTMKLSRLA  197 (316)
Q Consensus       172 ~-~~~g~~vi~iSa~~------g~gi~~L~~~L  197 (316)
                      + .+.+..++.+||+.      ++|++++.+.+
T Consensus       129 ~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~  161 (164)
T cd04162         129 IARGRRWILQGTSLDDDGSPSRMEAVKDLLSQL  161 (164)
T ss_pred             hcCCCceEEEEeeecCCCChhHHHHHHHHHHHH
Confidence            2 23346677788877      88887776654

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04167 Snu114p Snu114p subfamily

Probab=98.21  E-value=8.4e-06  Score=72.76  Aligned_cols=90  Identities=17%  Similarity=0.115  Sum_probs=63.5

Q ss_pred             CCCCcchhhhhhccccCCcceEEE--ec---ccc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHH
Q 021210           70 SNGSIEAYEEECDWADLDADLYYW--TK---SLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMD  142 (316)
Q Consensus        70 ~~~~~g~~~e~e~~~~~d~~~~~~--~~---~~~--~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~  142 (316)
                      +.+.|-...|++.+.+++.....+  ..   ...  .+-++||| .++...+...+..+|.+++|+|+..+.......+.
T Consensus        38 ~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~-~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~  116 (213)
T cd04167          38 LRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH-VNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLI  116 (213)
T ss_pred             eeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC-cchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHH
Confidence            345566667788888877666543  21   111  26688999 56777888889999999999999877654333333


Q ss_pred             HHh--CCCCEEEEEEccCCC
Q 021210          143 QWL--GNRKRILVLNREDMI  160 (316)
Q Consensus       143 ~~l--~~k~~IlVlNK~DLv  160 (316)
                      +..  .++|.++|+||+|++
T Consensus       117 ~~~~~~~~p~iiviNK~D~~  136 (213)
T cd04167         117 RHAILEGLPIVLVINKIDRL  136 (213)
T ss_pred             HHHHHcCCCEEEEEECcccC
Confidence            332  368999999999986

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>cd04120 Rab12 Rab12 subfamily

Probab=98.21  E-value=7.3e-06  Score=72.99  Aligned_cols=99  Identities=10%  Similarity=0.051  Sum_probs=64.8

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHh-CCCCEEEEEEccCCCChHhH--HHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL-GNRKRILVLNREDMISMADR--NAWATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l-~~k~~IlVlNK~DLv~~~~~--~~~~~~  171 (316)
                      +-+++|+ .++.......++.+|.+|+|+|..++.+..+.     .+.... .+.|+++|.||+||.+..++  .+-.++
T Consensus        53 iwDtaGq-e~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~  131 (202)
T cd04120          53 IWDTAGQ-ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKF  131 (202)
T ss_pred             EEeCCCc-hhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHH
Confidence            3455776 56666566788999999999999876543321     111111 25789999999999643321  111222


Q ss_pred             HHhc-CceEEEeccccccchhhhHHHHHH
Q 021210          172 FAKQ-GTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       172 ~~~~-g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      ..+. +..++.+||++|.|++++.+.+..
T Consensus       132 a~~~~~~~~~etSAktg~gV~e~F~~l~~  160 (202)
T cd04120         132 AQQITGMRFCEASAKDNFNVDEIFLKLVD  160 (202)
T ss_pred             HHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence            2232 567889999999999988765543

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>TIGR00484 EF-G translation elongation factor EF-G

Probab=98.21  E-value=7.2e-06  Score=85.82  Aligned_cols=92  Identities=15%  Similarity=0.051  Sum_probs=71.5

Q ss_pred             CCCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC-
Q 021210           70 SNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG-  146 (316)
Q Consensus        70 ~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~-  146 (316)
                      ..++|-...|++.++|++.....|......  +-++||| .++...+...++.+|++++|+|+..+.......+..++. 
T Consensus        47 ~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~-~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~  125 (689)
T TIGR00484        47 AATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGH-VDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANR  125 (689)
T ss_pred             ccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCC-cchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHH
Confidence            356677788999999999888766554443  6688999 456667888999999999999999877665555555443 


Q ss_pred             -CCCEEEEEEccCCCCh
Q 021210          147 -NRKRILVLNREDMISM  162 (316)
Q Consensus       147 -~k~~IlVlNK~DLv~~  162 (316)
                       +.|+++++||+|+...
T Consensus       126 ~~~p~ivviNK~D~~~~  142 (689)
T TIGR00484       126 YEVPRIAFVNKMDKTGA  142 (689)
T ss_pred             cCCCEEEEEECCCCCCC
Confidence             6799999999999853

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=98.21  E-value=2.7e-06  Score=71.02  Aligned_cols=54  Identities=26%  Similarity=0.275  Sum_probs=36.0

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~  273 (316)
                      +||+++|.+|||||||+|++.+...  ......|+.+.  ..+.++.   .+.++||||-.
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~   60 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE   60 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCC--cCCcCCcchheEEEEEEECCEEEEEEEEECCCCc
Confidence            4799999999999999999997652  22233333332  1222332   25689999964

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04128 Spg1 Spg1p

Probab=98.21  E-value=6.2e-06  Score=71.92  Aligned_cols=99  Identities=13%  Similarity=0.024  Sum_probs=61.8

Q ss_pred             ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh---CCCCEEEEEEccCCCC---hHh---HHH-H
Q 021210          101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL---GNRKRILVLNREDMIS---MAD---RNA-W  168 (316)
Q Consensus       101 ~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l---~~k~~IlVlNK~DLv~---~~~---~~~-~  168 (316)
                      -+++|+ .++.......+..+|++++|+|..++.+..+  ..+....   .....++|.||+||..   ..+   ..+ .
T Consensus        54 wDt~G~-~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~pilVgnK~Dl~~~~~~~~~~~~~~~~  132 (182)
T cd04128          54 WDLGGQ-REFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPILVGTKYDLFADLPPEEQEEITKQA  132 (182)
T ss_pred             EeCCCc-hhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhhhHHHH
Confidence            345666 4455444566899999999999977644322  1122221   2233478999999962   111   111 2


Q ss_pred             HHHHHhcCceEEEeccccccchhhhHHHHHHh
Q 021210          169 ATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       169 ~~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      .++....+..++.+||++|.|++++.+.+.+.
T Consensus       133 ~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~~  164 (182)
T cd04128         133 RKYAKAMKAPLIFCSTSHSINVQKIFKIVLAK  164 (182)
T ss_pred             HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            22333456778999999999999988766543

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>PRK14845 translation initiation factor IF-2; Provisional

Probab=98.21  E-value=7.9e-06  Score=88.19  Aligned_cols=102  Identities=18%  Similarity=0.134  Sum_probs=69.1

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChHh-------------
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD-------------  164 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~-------------  164 (316)
                      +-++||| ..+..........+|++++|+|+.+++..........+.  +.|+++|+||+|+.+...             
T Consensus       530 fiDTPGh-e~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~  608 (1049)
T PRK14845        530 FIDTPGH-EAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNFNE  608 (1049)
T ss_pred             EEECCCc-HHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhhhh
Confidence            5678999 556555556678899999999998876554443333332  679999999999974211             


Q ss_pred             -----HHHHH-------HHHHhcC---------------ceEEEeccccccchhhhHHHHHHhhh
Q 021210          165 -----RNAWA-------TYFAKQG---------------TKVIFSNGQLGMGTMKLSRLAKALAS  202 (316)
Q Consensus       165 -----~~~~~-------~~~~~~g---------------~~vi~iSa~~g~gi~~L~~~L~~l~~  202 (316)
                           ..+..       ..+.+.|               ..++++||++|+|+++|...+..+.+
T Consensus       609 q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~  673 (1049)
T PRK14845        609 QDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ  673 (1049)
T ss_pred             hHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence                 01110       0112221               46899999999999999988765544

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=98.20  E-value=2.1e-06  Score=74.83  Aligned_cols=55  Identities=20%  Similarity=0.268  Sum_probs=38.1

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCcc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII  273 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~  273 (316)
                      ..+|+++|.+|||||||+|++.+.....+.+..+.|..  .+.. +..+.++||||..
T Consensus        17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~D~~G~~   72 (184)
T smart00178       17 HAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSE--ELAIGNIKFTTFDLGGHQ   72 (184)
T ss_pred             cCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceE--EEEECCEEEEEEECCCCH
Confidence            46799999999999999999998654333332233322  2222 3467899999975

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd01864 Rab19 Rab19 subfamily

Probab=98.20  E-value=2.9e-06  Score=71.84  Aligned_cols=56  Identities=21%  Similarity=0.344  Sum_probs=36.3

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccC-CCCCceeeEEEEEeCC---cEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAA-PRPGVTRVLKWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs-~~pgtT~~~~~~~~~~---~~~liDTPGi~  273 (316)
                      .||+++|.+|+|||||+|++......... ...|+......+..+.   .+.++||||-.
T Consensus         4 ~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~   63 (165)
T cd01864           4 FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQE   63 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChH
Confidence            57999999999999999999865432211 1112222223344433   57899999953

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01884 EF_Tu EF-Tu subfamily

Probab=98.20  E-value=1.7e-06  Score=76.69  Aligned_cols=56  Identities=25%  Similarity=0.427  Sum_probs=40.9

Q ss_pred             eEEeEeccCCCCcchhHHhhhcC------ccc---------ccCCCCCceeeEEEEEe---CCcEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKR------RMC---------PAAPRPGVTRVLKWVRF---GKDLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~------~~~---------~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~  273 (316)
                      ++|+++|.+|+|||||+++|+..      ...         ......|+|.+.....+   +..+.++||||..
T Consensus         3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~   76 (195)
T cd01884           3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHA   76 (195)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHH
Confidence            67999999999999999999853      110         01124688888654444   4468999999974

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=98.19  E-value=2.3e-06  Score=73.69  Aligned_cols=54  Identities=20%  Similarity=0.321  Sum_probs=38.4

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~  273 (316)
                      .+|+++|.+|||||||+|+|.........+..|.+.  ..+.. +..+.++||||..
T Consensus        16 ~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~l~D~~G~~   70 (174)
T cd04153          16 YKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNV--EEIVYKNIRFLMWDIGGQE   70 (174)
T ss_pred             cEEEEECCCCCCHHHHHHHHccCCCCCcCCccccce--EEEEECCeEEEEEECCCCH
Confidence            579999999999999999998765444443334332  22222 3468899999974

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd00157 Rho Rho (Ras homology) family

Probab=98.19  E-value=2.5e-06  Score=72.16  Aligned_cols=98  Identities=13%  Similarity=-0.005  Sum_probs=61.9

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHH----HhCCCCEEEEEEccCCCChHhH--------
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQ----WLGNRKRILVLNREDMISMADR--------  165 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~~----~l~~k~~IlVlNK~DLv~~~~~--------  165 (316)
                      +-++||+. ++.......+..+|++++|+|+.++.+....  .+..    ...+.|+++|.||+|+.+....        
T Consensus        52 ~~D~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~  130 (171)
T cd00157          52 LWDTAGQE-EYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGK  130 (171)
T ss_pred             EEeCCCcc-cccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCC
Confidence            34567763 3323223446889999999999865432221  1111    1236899999999999755432        


Q ss_pred             -----HHHHHHHHhcCc-eEEEeccccccchhhhHHHHH
Q 021210          166 -----NAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAK  198 (316)
Q Consensus       166 -----~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~L~  198 (316)
                           ++..+.....+. .++.+|+++|.|++++.+.+.
T Consensus       131 ~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~  169 (171)
T cd00157         131 EPITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAI  169 (171)
T ss_pred             CccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHh
Confidence                 111223334444 789999999999999887654

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=98.19  E-value=2.4e-06  Score=72.39  Aligned_cols=55  Identities=18%  Similarity=0.275  Sum_probs=37.5

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~  273 (316)
                      .||+++|.+|||||||+|++.+... .....|.++.+.  ..+..+.   .+.++||||..
T Consensus         3 ~ki~i~G~~~vGKSsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~   62 (166)
T cd01869           3 FKLLLIGDSGVGKSCLLLRFADDTY-TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE   62 (166)
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccceeEEEEEEEECCEEEEEEEEECCCcH
Confidence            5799999999999999999997653 223344444332  2233322   47899999964

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=98.19  E-value=1.6e-06  Score=76.13  Aligned_cols=56  Identities=23%  Similarity=0.367  Sum_probs=37.7

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccC---------------CCCCceeeEEEEEe---CCcEEEEeCCCccc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAA---------------PRPGVTRVLKWVRF---GKDLEFLDSPGIIP  274 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs---------------~~pgtT~~~~~~~~---~~~~~liDTPGi~~  274 (316)
                      +|+++|.+|||||||+|+|+........               ...|+|.......+   ...+.++||||...
T Consensus         4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~   77 (194)
T cd01891           4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHAD   77 (194)
T ss_pred             EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHH
Confidence            6899999999999999999963211111               12466655432222   34688999999753

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd04142 RRP22 RRP22 subfamily

Probab=98.19  E-value=4.2e-06  Score=74.16  Aligned_cols=56  Identities=30%  Similarity=0.504  Sum_probs=38.3

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCccc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP  274 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~~  274 (316)
                      ++|+++|.+|||||||+|++.+..... ...|.++.+.  ..+..+.   .+.|+||||...
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~-~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~   61 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPE-EYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQR   61 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCc-ccCCccccccceeEEEECCEEEEEEEEeCCCccc
Confidence            369999999999999999999765322 2345554342  2233333   367999999864

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>CHL00071 tufA elongation factor Tu

Probab=98.19  E-value=2e-06  Score=84.68  Aligned_cols=58  Identities=22%  Similarity=0.384  Sum_probs=42.4

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCccc---------------ccCCCCCceeeEEEEEe---CCcEEEEeCCCcc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMC---------------PAAPRPGVTRVLKWVRF---GKDLEFLDSPGII  273 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~---------------~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~  273 (316)
                      ..++|+++|.+|+|||||+|+|++....               .....+|+|++.....+   +..+.|+||||..
T Consensus        11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~   86 (409)
T CHL00071         11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA   86 (409)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH
Confidence            4688999999999999999999964211               11123789988644333   3468899999953

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=98.19  E-value=1.8e-05  Score=65.89  Aligned_cols=82  Identities=17%  Similarity=0.200  Sum_probs=58.2

Q ss_pred             hhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChHhHHHHHHH----HH--hcCceEEEeccccccch
Q 021210          119 KLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATY----FA--KQGTKVIFSNGQLGMGT  190 (316)
Q Consensus       119 ~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~~~~~~~~----~~--~~g~~vi~iSa~~g~gi  190 (316)
                      +..+++++|+|...+.......+.+++.  +.|+++|+||+|+.+..+.......    +.  ....+++++|++++.|+
T Consensus        80 ~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~  159 (170)
T cd01876          80 ENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGI  159 (170)
T ss_pred             hhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCH
Confidence            4568899999998776555555555554  5789999999999866543332222    21  12256889999999999


Q ss_pred             hhhHHHHHHh
Q 021210          191 MKLSRLAKAL  200 (316)
Q Consensus       191 ~~L~~~L~~l  200 (316)
                      +++.+.+.++
T Consensus       160 ~~l~~~l~~~  169 (170)
T cd01876         160 DELRALIEKW  169 (170)
T ss_pred             HHHHHHHHHh
Confidence            9998887654

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=98.19  E-value=9.9e-06  Score=69.77  Aligned_cols=98  Identities=10%  Similarity=-0.070  Sum_probs=65.2

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH-----HHHHh--CCCCEEEEEEccCCCChHh--HHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL--GNRKRILVLNREDMISMAD--RNAWAT  170 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~-----i~~~l--~~k~~IlVlNK~DLv~~~~--~~~~~~  170 (316)
                      +-++||. .++.......+..+|.+++|+|..++.+..+..     +.+..  .+.|+++|.||+|+....+  .++..+
T Consensus        54 i~Dt~G~-~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~  132 (172)
T cd04141          54 ILDTAGQ-AEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRN  132 (172)
T ss_pred             EEeCCCc-hhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHH
Confidence            3456776 455554556788999999999998765543321     22221  2579999999999864321  112222


Q ss_pred             HHHhcCceEEEeccccccchhhhHHHHH
Q 021210          171 YFAKQGTKVIFSNGQLGMGTMKLSRLAK  198 (316)
Q Consensus       171 ~~~~~g~~vi~iSa~~g~gi~~L~~~L~  198 (316)
                      ..++.+..++.+||++|.|++++.+.+.
T Consensus       133 ~a~~~~~~~~e~Sa~~~~~v~~~f~~l~  160 (172)
T cd04141         133 LAREFNCPFFETSAALRHYIDDAFHGLV  160 (172)
T ss_pred             HHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence            3344567889999999999998876654

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=98.18  E-value=2.5e-06  Score=82.48  Aligned_cols=60  Identities=23%  Similarity=0.234  Sum_probs=38.9

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCc-----ccccCCCCCceeeEEEEEeC--CcEEEEeCCCcccCCC
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRR-----MCPAAPRPGVTRVLKWVRFG--KDLEFLDSPGIIPMRI  277 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~-----~~~vs~~pgtT~~~~~~~~~--~~~~liDTPGi~~~~~  277 (316)
                      +++|+|+|-+|+|||||||+|.|-.     .+.++. ..||.....|.-.  .++.++|.||+-.+.+
T Consensus        35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv-~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f  101 (376)
T PF05049_consen   35 PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGV-VETTMEPTPYPHPKFPNVTLWDLPGIGTPNF  101 (376)
T ss_dssp             -EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSS-HSCCTS-EEEE-SS-TTEEEEEE--GGGSS-
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCC-CcCCCCCeeCCCCCCCCCeEEeCCCCCCCCC
Confidence            6889999999999999999998732     223332 2466666655543  4799999999975554

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=98.18  E-value=2.6e-06  Score=77.12  Aligned_cols=60  Identities=28%  Similarity=0.426  Sum_probs=40.0

Q ss_pred             ccceEEeEeccCCCCcchhHHhhhcCcccccC-------CCCCceee-E--EEEEe---CCcEEEEeCCCccc
Q 021210          215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAA-------PRPGVTRV-L--KWVRF---GKDLEFLDSPGIIP  274 (316)
Q Consensus       215 ~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs-------~~pgtT~~-~--~~~~~---~~~~~liDTPGi~~  274 (316)
                      ++..+|++||.+|.|||||+|+|...+....+       ++|.||-= .  +.+.-   .-++.+||||||-+
T Consensus        44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGD  116 (336)
T KOG1547|consen   44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGD  116 (336)
T ss_pred             cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCccc
Confidence            35688999999999999999999976654432       23333321 1  11111   12578999999964

>cd04168 TetM_like Tet(M)-like subfamily

Probab=98.18  E-value=1.1e-05  Score=73.63  Aligned_cols=88  Identities=17%  Similarity=0.082  Sum_probs=64.9

Q ss_pred             CcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCC
Q 021210           73 SIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNR  148 (316)
Q Consensus        73 ~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k  148 (316)
                      .|-...|++.+.+++.....+.....+  +-++||| .++...+...+..+|.+++|+|+..+.......+.+.+  .+.
T Consensus        39 ~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~-~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~  117 (237)
T cd04168          39 TDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGH-MDFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNI  117 (237)
T ss_pred             CCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCc-cchHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCC
Confidence            344455777788887777655544443  6688999 66778888999999999999999987654334444443  278


Q ss_pred             CEEEEEEccCCCC
Q 021210          149 KRILVLNREDMIS  161 (316)
Q Consensus       149 ~~IlVlNK~DLv~  161 (316)
                      |+++++||+|+..
T Consensus       118 P~iivvNK~D~~~  130 (237)
T cd04168         118 PTIIFVNKIDRAG  130 (237)
T ss_pred             CEEEEEECccccC
Confidence            9999999999874

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PLN03118 Rab family protein; Provisional

Probab=98.17  E-value=8e-06  Score=72.63  Aligned_cols=100  Identities=13%  Similarity=0.005  Sum_probs=67.2

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH--HHHHh------CCCCEEEEEEccCCCChHh--HHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL------GNRKRILVLNREDMISMAD--RNAWA  169 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~--i~~~l------~~k~~IlVlNK~DLv~~~~--~~~~~  169 (316)
                      +-++||+ .++.......+..+|.+|+|+|+.++.+..+..  +...+      .+.++++|.||+|+.....  .++..
T Consensus        66 l~Dt~G~-~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~  144 (211)
T PLN03118         66 IWDTAGQ-ERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGM  144 (211)
T ss_pred             EEECCCc-hhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHH
Confidence            5578887 556555567789999999999998654322211  11111      2458899999999974322  12223


Q ss_pred             HHHHhcCceEEEeccccccchhhhHHHHHHh
Q 021210          170 TYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       170 ~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      +.....+..++.+||++|.|++++.+.+...
T Consensus       145 ~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~  175 (211)
T PLN03118        145 ALAKEHGCLFLECSAKTRENVEQCFEELALK  175 (211)
T ss_pred             HHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            3334456778999999999999988776544

>cd01865 Rab3 Rab3 subfamily

Probab=98.17  E-value=3.8e-06  Score=71.36  Aligned_cols=55  Identities=25%  Similarity=0.244  Sum_probs=36.1

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCce--eeEEEEEeC---CcEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT--RVLKWVRFG---KDLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT--~~~~~~~~~---~~~~liDTPGi~  273 (316)
                      +||+++|.+|||||||+|+|.+.+... ...|.++  .....+..+   -.+.++||||..
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~   61 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTS-AFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQE   61 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCChH
Confidence            579999999999999999999766322 2223222  222222222   247899999964

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd01890 LepA LepA subfamily

Probab=98.17  E-value=1.3e-06  Score=74.75  Aligned_cols=56  Identities=29%  Similarity=0.369  Sum_probs=37.1

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccc--------------cCCCCCceeeEEEEEe--------CCcEEEEeCCCccc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCP--------------AAPRPGVTRVLKWVRF--------GKDLEFLDSPGIIP  274 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~--------------vs~~pgtT~~~~~~~~--------~~~~~liDTPGi~~  274 (316)
                      +|+++|.+|||||||+|+|++.....              .....|+|...+....        ...+.++||||...
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   79 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVD   79 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChh
Confidence            48999999999999999998743211              1112356655432221        22367999999864

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd04126 Rab20 Rab20 subfamily

Probab=98.17  E-value=7e-06  Score=74.15  Aligned_cols=99  Identities=10%  Similarity=-0.045  Sum_probs=62.9

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----CCCCEEEEEEccCCCCh-----------
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISM-----------  162 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~~~l----~~k~~IlVlNK~DLv~~-----------  162 (316)
                      +-++||+ .++.......+..+|++|+|+|..+..+..+.  .+..+.    .+.|+|+|.||+||.+.           
T Consensus        48 iwDt~G~-e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~  126 (220)
T cd04126          48 IWDTAGR-EQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAG  126 (220)
T ss_pred             EEeCCCc-ccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccccccccccccc
Confidence            3445676 44544445678899999999999876443322  122222    24689999999999751           


Q ss_pred             --------Hh--HHHHHHHHHhcC--------------ceEEEeccccccchhhhHHHHHH
Q 021210          163 --------AD--RNAWATYFAKQG--------------TKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       163 --------~~--~~~~~~~~~~~g--------------~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                              .+  .++..++.++.+              ..++.+||++|.|++++...+.+
T Consensus       127 ~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~  187 (220)
T cd04126         127 DRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFN  187 (220)
T ss_pred             ccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHH
Confidence                    10  122223333333              46889999999999998766554

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04175 Rap1 Rap1 subgroup

Probab=98.17  E-value=2.3e-06  Score=72.36  Aligned_cols=54  Identities=24%  Similarity=0.223  Sum_probs=37.1

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~  273 (316)
                      .||+++|.+|||||||+|++....  .....+.|+.+.  ..+.++.   .+.++||||..
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~   60 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGI--FVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTE   60 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCC--CCcccCCcchheEEEEEEECCEEEEEEEEECCCcc
Confidence            479999999999999999998543  233444555442  1233332   35689999974

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04176 Rap2 Rap2 subgroup

Probab=98.17  E-value=6.7e-06  Score=69.28  Aligned_cols=97  Identities=12%  Similarity=-0.094  Sum_probs=62.3

Q ss_pred             ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-H----HHHHh--CCCCEEEEEEccCCCChHhH--HHHHHH
Q 021210          101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L----MDQWL--GNRKRILVLNREDMISMADR--NAWATY  171 (316)
Q Consensus       101 ~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-~----i~~~l--~~k~~IlVlNK~DLv~~~~~--~~~~~~  171 (316)
                      -++||+ .++.......+..+|.+++|+|..++.+..+. .    +.+..  .+.|+++|.||+|+.+....  .+....
T Consensus        54 ~Dt~G~-~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~  132 (163)
T cd04176          54 LDTAGT-EQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRAL  132 (163)
T ss_pred             EECCCc-ccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHH
Confidence            456775 44555455668899999999999775432211 1    11111  36799999999998653221  111222


Q ss_pred             HHhcCceEEEeccccccchhhhHHHHH
Q 021210          172 FAKQGTKVIFSNGQLGMGTMKLSRLAK  198 (316)
Q Consensus       172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~  198 (316)
                      ....+..++++||++|.|++++...+.
T Consensus       133 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd04176         133 AEEWGCPFMETSAKSKTMVNELFAEIV  159 (163)
T ss_pred             HHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            233456789999999999998876653

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=98.16  E-value=3.4e-06  Score=71.11  Aligned_cols=54  Identities=20%  Similarity=0.255  Sum_probs=36.3

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCccc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP  274 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~~  274 (316)
                      ||+++|.+|||||||+|++.+....  .....|+.+.  .....+.   .+.++||||...
T Consensus         2 ki~v~G~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~   60 (164)
T smart00173        2 KLVVLGSGGVGKSALTIQFVQGHFV--DDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEE   60 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCcCC--cccCCchhhhEEEEEEECCEEEEEEEEECCCccc
Confidence            6999999999999999999976532  2233344332  1222322   467899999754

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04159 Arl10_like Arl10-like subfamily

Probab=98.16  E-value=3.5e-06  Score=69.63  Aligned_cols=53  Identities=25%  Similarity=0.299  Sum_probs=36.4

Q ss_pred             EeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCcc
Q 021210          220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII  273 (316)
Q Consensus       220 i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~  273 (316)
                      |+++|.+|||||||+|+|.+... .....|.+..+...+.. +..+.++||||..
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~   55 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQF-SEDTIPTVGFNMRKVTKGNVTLKVWDLGGQP   55 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCC-CcCccCCCCcceEEEEECCEEEEEEECCCCH
Confidence            79999999999999999998653 23334443333322222 2357899999964

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>COG0218 Predicted GTPase [General function prediction only]

Probab=98.15  E-value=2.1e-05  Score=69.53  Aligned_cols=93  Identities=22%  Similarity=0.198  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHh---hcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChHhHHHHHHHHH-hcC----c
Q 021210          108 AKTEKELKDQLK---LMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFA-KQG----T  177 (316)
Q Consensus       108 ~~~~r~l~~~i~---~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~~~~~~~~~~-~~g----~  177 (316)
                      ++..+.+.+.+.   +-..+++|+|+|+++...+.++.+++.  +.|+++|+||+|.++..+..+...... .++    .
T Consensus        91 e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~  170 (200)
T COG0218          91 EKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPD  170 (200)
T ss_pred             HHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCc
Confidence            334444445553   356799999999999998989888876  789999999999999876544333333 221    2


Q ss_pred             e--EEEeccccccchhhhHHHHHHh
Q 021210          178 K--VIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       178 ~--vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      .  +++.|+..+.|+++|++.|.+.
T Consensus       171 ~~~~~~~ss~~k~Gi~~l~~~i~~~  195 (200)
T COG0218         171 DQWVVLFSSLKKKGIDELKAKILEW  195 (200)
T ss_pred             cceEEEEecccccCHHHHHHHHHHH
Confidence            2  7888999999999998877654

>cd00879 Sar1 Sar1 subfamily

Probab=98.15  E-value=3.2e-06  Score=73.39  Aligned_cols=55  Identities=20%  Similarity=0.285  Sum_probs=37.1

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCcc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII  273 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~  273 (316)
                      ..+|+++|.+|||||||+|+|.+.......+..+.+.  ..+.. +..+.++||||-.
T Consensus        19 ~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~--~~i~~~~~~~~l~D~~G~~   74 (190)
T cd00879          19 EAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTS--EELTIGNIKFKTFDLGGHE   74 (190)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcce--EEEEECCEEEEEEECCCCH
Confidence            4579999999999999999999765433222222222  12222 3467899999954

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=98.15  E-value=1.8e-06  Score=71.34  Aligned_cols=44  Identities=23%  Similarity=0.400  Sum_probs=31.5

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEeCCcEEEEeCCCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGI  272 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~~~~~~liDTPGi  272 (316)
                      ||+++|.+|||||||+|+|.+....    .+ .|....+   ..  .++||||.
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~----~~-~t~~~~~---~~--~~iDt~G~   45 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL----YK-KTQAVEY---ND--GAIDTPGE   45 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc----cc-cceeEEE---cC--eeecCchh
Confidence            5899999999999999999977531    11 1222222   22  68999997

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=98.15  E-value=5.7e-06  Score=70.48  Aligned_cols=98  Identities=14%  Similarity=0.030  Sum_probs=61.9

Q ss_pred             ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH------HHHHHhCCCCEEEEEEccCCCChHh----------
Q 021210          101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP------LMDQWLGNRKRILVLNREDMISMAD----------  164 (316)
Q Consensus       101 ~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~------~i~~~l~~k~~IlVlNK~DLv~~~~----------  164 (316)
                      -++||. .++.......++.+|++|+|+|..++.+..+.      .+.....+.|+++|.||+|+.+...          
T Consensus        51 ~Dt~G~-~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~  129 (174)
T smart00174       51 WDTAGQ-EDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQ  129 (174)
T ss_pred             EECCCC-cccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccC
Confidence            356776 33433333457899999999999865433221      1111223689999999999965221          


Q ss_pred             ----HHHHHHHHHhcCc-eEEEeccccccchhhhHHHHHH
Q 021210          165 ----RNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       165 ----~~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                          .++..+..++.+. .++.+||++|.|++++.+.+..
T Consensus       130 ~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~  169 (174)
T smart00174      130 EPVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEAIR  169 (174)
T ss_pred             CCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHH
Confidence                0111123334453 7889999999999998776543

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04106 Rab23_lke Rab23-like subfamily

Probab=98.15  E-value=3.3e-06  Score=70.88  Aligned_cols=55  Identities=27%  Similarity=0.349  Sum_probs=35.9

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeC-----CcEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG-----KDLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~-----~~~~liDTPGi~  273 (316)
                      ++|+++|.+|+|||||+|++.+.... ....|..+.+.  ..+.+.     -.+.++||||..
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   62 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFT-KDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQE   62 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchH
Confidence            36999999999999999999976432 12223333332  112222     247899999953

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04136 Rap_like Rap-like subfamily

Probab=98.15  E-value=2.4e-06  Score=71.68  Aligned_cols=55  Identities=22%  Similarity=0.256  Sum_probs=36.8

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCccc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP  274 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~~  274 (316)
                      .+|+++|.+|||||||+|++.....  +...+.|+.+.  ..+..+.   .+.|+||||...
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~   61 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQ   61 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCC--CcccCCchhhhEEEEEEECCEEEEEEEEECCCccc
Confidence            4799999999999999999996542  23333444332  2222332   356899999753

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>COG2229 Predicted GTPase [General function prediction only]

Probab=98.14  E-value=1.7e-05  Score=68.96  Aligned_cols=95  Identities=14%  Similarity=0.112  Sum_probs=72.9

Q ss_pred             ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--C-CCEEEEEEccCCCChHhHHHHHHHHHhc--
Q 021210          101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--N-RKRILVLNREDMISMADRNAWATYFAKQ--  175 (316)
Q Consensus       101 ~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~-k~~IlVlNK~DLv~~~~~~~~~~~~~~~--  175 (316)
                      =.+||| .++...+....+.++-+|+++|.+.+.+.....+.+++.  + .|+++++||.||-+....++..+++...  
T Consensus        73 fgtPGq-~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~  151 (187)
T COG2229          73 FGTPGQ-ERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKLELL  151 (187)
T ss_pred             ecCCCc-HHHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHHhccC
Confidence            457999 777777777788999999999999988876666777765  4 6899999999998654444555555543  


Q ss_pred             CceEEEeccccccchhhhHHH
Q 021210          176 GTKVIFSNGQLGMGTMKLSRL  196 (316)
Q Consensus       176 g~~vi~iSa~~g~gi~~L~~~  196 (316)
                      ..+++.+++..++|..+....
T Consensus       152 ~~~vi~~~a~e~~~~~~~L~~  172 (187)
T COG2229         152 SVPVIEIDATEGEGARDQLDV  172 (187)
T ss_pred             CCceeeeecccchhHHHHHHH
Confidence            578999999999987664443

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.14  E-value=2.5e-06  Score=78.67  Aligned_cols=56  Identities=30%  Similarity=0.458  Sum_probs=48.7

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccc--cCCCCCceeeEEEEEeCCcEEEEeCCCc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCP--AAPRPGVTRVLKWVRFGKDLEFLDSPGI  272 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~--vs~~pgtT~~~~~~~~~~~~~liDTPGi  272 (316)
                      ..++++.|.+|||||||||.++..+...  .+..+|-|+.++.+..+..++++|.||+
T Consensus       136 ~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~  193 (320)
T KOG2486|consen  136 RPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGY  193 (320)
T ss_pred             CceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCc
Confidence            4679999999999999999999765433  3448999999999999999999999994

>cd04112 Rab26 Rab26 subfamily

Probab=98.14  E-value=3.8e-06  Score=73.50  Aligned_cols=54  Identities=22%  Similarity=0.270  Sum_probs=35.6

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGI  272 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi  272 (316)
                      ||+++|.+|||||||+|++.+.........+.++.+.  ..+.++.   .+.|+||||-
T Consensus         2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~   60 (191)
T cd04112           2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQ   60 (191)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCc
Confidence            6999999999999999999876532212223222232  2233332   4789999995

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04155 Arl3 Arl3 subfamily

Probab=98.14  E-value=8.3e-06  Score=69.40  Aligned_cols=97  Identities=13%  Similarity=0.084  Sum_probs=62.1

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF  172 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~  172 (316)
                      +-++||+ .++.......++.+|.+++|+|+.+.....  ...+...+     .+.|+++++||+|+....+.++..+.+
T Consensus        62 ~~D~~G~-~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l  140 (173)
T cd04155          62 VWDIGGQ-RAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEAL  140 (173)
T ss_pred             EEECCCC-HHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHc
Confidence            3456776 445555556789999999999997642211  11222222     257999999999997654333333333


Q ss_pred             HhcC-----ceEEEeccccccchhhhHHHH
Q 021210          173 AKQG-----TKVIFSNGQLGMGTMKLSRLA  197 (316)
Q Consensus       173 ~~~g-----~~vi~iSa~~g~gi~~L~~~L  197 (316)
                      .-..     ..++.+||++|.|++++.+.+
T Consensus       141 ~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  170 (173)
T cd04155         141 NLHDLRDRTWHIQACSAKTGEGLQEGMNWV  170 (173)
T ss_pred             CCcccCCCeEEEEEeECCCCCCHHHHHHHH
Confidence            2111     246789999999999887765

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=98.14  E-value=2.4e-06  Score=71.61  Aligned_cols=53  Identities=25%  Similarity=0.263  Sum_probs=36.1

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeC---CcEEEEeCCCcc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG---KDLEFLDSPGII  273 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~---~~~~liDTPGi~  273 (316)
                      ||+++|.+|||||||+|++.....  +....+++.+.  .....+   ..+.++||||..
T Consensus         2 ki~~~G~~~~GKTsl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   59 (164)
T cd04139           2 KVIVVGAGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQE   59 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCC--ccccCCcchhhEEEEEEECCEEEEEEEEECCChh
Confidence            689999999999999999996542  23444444332  112222   247899999964

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04125 RabA_like RabA-like subfamily

Probab=98.14  E-value=1.3e-05  Score=69.71  Aligned_cols=100  Identities=11%  Similarity=0.057  Sum_probs=64.9

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHhC-CCCEEEEEEccCCCChHhH--HHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG-NRKRILVLNREDMISMADR--NAWATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l~-~k~~IlVlNK~DLv~~~~~--~~~~~~  171 (316)
                      +-++||+ .++.......++.+|++|+|+|..++.+..+.     .+..+.. ..|+++|.||+|+.+....  .....+
T Consensus        53 i~Dt~g~-~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~  131 (188)
T cd04125          53 IWDTNGQ-ERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSF  131 (188)
T ss_pred             EEECCCc-HHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHH
Confidence            3456776 45555566778999999999999765432211     1111112 4689999999999743221  111222


Q ss_pred             HHhcCceEEEeccccccchhhhHHHHHHh
Q 021210          172 FAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      ....+..++.+||++|.|++++.+.+...
T Consensus       132 ~~~~~~~~~evSa~~~~~i~~~f~~l~~~  160 (188)
T cd04125         132 CDSLNIPFFETSAKQSINVEEAFILLVKL  160 (188)
T ss_pred             HHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            33456789999999999999887765443

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01893 Miro1 Miro1 subfamily

Probab=98.14  E-value=2.3e-06  Score=72.89  Aligned_cols=54  Identities=28%  Similarity=0.244  Sum_probs=35.5

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCc----eeeEEEEEeCCcEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGV----TRVLKWVRFGKDLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgt----T~~~~~~~~~~~~~liDTPGi~  273 (316)
                      +||+++|.+|||||||+|++.+....  +..|.+    |.........-.+.++||||..
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~   58 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFP--ENVPRVLPEITIPADVTPERVPTTIVDTSSRP   58 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCC--ccCCCcccceEeeeeecCCeEEEEEEeCCCch
Confidence            37999999999999999999976532  223332    2221111112247899999975

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.13  E-value=3.7e-06  Score=76.62  Aligned_cols=60  Identities=30%  Similarity=0.473  Sum_probs=47.5

Q ss_pred             ccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE---EEEeCCcEEEEeCCCcccC
Q 021210          215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK---WVRFGKDLEFLDSPGIIPM  275 (316)
Q Consensus       215 ~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~---~~~~~~~~~liDTPGi~~~  275 (316)
                      ....+|++||+|.||||||+..|+... ...+.+-+||....   ..+.+..++++|-|||+..
T Consensus        60 sGdaRValIGfPSVGKStlLs~iT~T~-SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieG  122 (364)
T KOG1486|consen   60 SGDARVALIGFPSVGKSTLLSKITSTH-SEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEG  122 (364)
T ss_pred             cCCeEEEEecCCCccHHHHHHHhhcch-hhhhceeeeEEEeecceEEecCceEEEecCcccccc
Confidence            345789999999999999999999765 46666778887642   2334778999999999864

>cd01862 Rab7 Rab7 subfamily

Probab=98.13  E-value=5.1e-06  Score=70.36  Aligned_cols=55  Identities=24%  Similarity=0.397  Sum_probs=35.2

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~  273 (316)
                      +||+++|.+|||||||+|+|.+... .....+..+.+.  ..+..+.   .+.++||||..
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~   60 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQE   60 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC-CcCcCCccceEEEEEEEEECCEEEEEEEEeCCChH
Confidence            3799999999999999999997653 222222222222  2222222   35689999964

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=98.12  E-value=4.7e-06  Score=72.48  Aligned_cols=55  Identities=22%  Similarity=0.350  Sum_probs=37.0

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCC--CceeeEEEEEe----CCcEEEEeCCCcc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP--GVTRVLKWVRF----GKDLEFLDSPGII  273 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~p--gtT~~~~~~~~----~~~~~liDTPGi~  273 (316)
                      .++|+++|.+|||||||+|++......  ...|  |.+.....+..    +-.+.++||||..
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~   63 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFV--NTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQE   63 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcC--CcCCccccceeEEEeeccCCCceEEEEEECCCcH
Confidence            468999999999999999999876533  2233  32222222221    2257899999974

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=98.12  E-value=2.9e-06  Score=72.92  Aligned_cols=55  Identities=24%  Similarity=0.322  Sum_probs=35.9

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee--EEEEEeC---CcEEEEeCCCccc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFG---KDLEFLDSPGIIP  274 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~--~~~~~~~---~~~~liDTPGi~~  274 (316)
                      .+|+++|.+|||||||+|++++... . .....++..  ...+..+   -.+.++||||...
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~-~-~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~   61 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHF-V-ESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDE   61 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCC-c-cccCcchhhhEEEEEEECCEEEEEEEEECCChHh
Confidence            3699999999999999999997652 2 222233322  1122222   2367999999753

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=98.12  E-value=2.3e-06  Score=70.03  Aligned_cols=98  Identities=16%  Similarity=0.086  Sum_probs=59.9

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCC-------CCcHHHHHHhC-CCCEEEEEEccCCCChHhHHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLS-------TTHPLMDQWLG-NRKRILVLNREDMISMADRNAWATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~-------~~~~~i~~~l~-~k~~IlVlNK~DLv~~~~~~~~~~~  171 (316)
                      +-++||+ .++.........+++.++.++|......       .....+..... +.|+++++||+|+..........+.
T Consensus        54 ~~D~~G~-~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~  132 (161)
T TIGR00231        54 LLDTAGQ-EDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAKLKTHVAFL  132 (161)
T ss_pred             EEECCCc-ccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcchhhHHHHHH
Confidence            4567887 3333333344556666666666554421       11222333333 6799999999999865433333334


Q ss_pred             HHhcC-ceEEEeccccccchhhhHHHHH
Q 021210          172 FAKQG-TKVIFSNGQLGMGTMKLSRLAK  198 (316)
Q Consensus       172 ~~~~g-~~vi~iSa~~g~gi~~L~~~L~  198 (316)
                      +...+ ..++++||++|.|+.++.+.++
T Consensus       133 ~~~~~~~~~~~~sa~~~~gv~~~~~~l~  160 (161)
T TIGR00231       133 FAKLNGEPIIPLSAETGKNIDSAFKIVE  160 (161)
T ss_pred             HhhccCCceEEeecCCCCCHHHHHHHhh
Confidence            44333 5689999999999999887654

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd00876 Ras Ras family

Probab=98.11  E-value=2.7e-06  Score=70.87  Aligned_cols=54  Identities=19%  Similarity=0.191  Sum_probs=37.8

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEeC---CcEEEEeCCCccc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG---KDLEFLDSPGIIP  274 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~~---~~~~liDTPGi~~  274 (316)
                      ||+++|.+|||||||+|+|++..  ..+....+|.+..  .+..+   -.+.++||||...
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   59 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGT--FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEE   59 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCC--CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHH
Confidence            48999999999999999999765  3444445554432  22333   2467999999753

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=98.11  E-value=1.3e-05  Score=64.52  Aligned_cols=97  Identities=15%  Similarity=-0.068  Sum_probs=65.8

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHH-----H--HhCCCCEEEEEEccCCCChHhHHHH---H
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMD-----Q--WLGNRKRILVLNREDMISMADRNAW---A  169 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~-----~--~l~~k~~IlVlNK~DLv~~~~~~~~---~  169 (316)
                      +-++||+. .........+..+|.+++|+|+..+....+....     .  ...++|+++++||+|+.+.......   .
T Consensus        49 l~D~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~  127 (157)
T cd00882          49 IWDTAGQE-RFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAE  127 (157)
T ss_pred             EEecCChH-HHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHH
Confidence            55678873 3444556778999999999999876543332211     1  1237899999999999866543332   1


Q ss_pred             HHHHhcCceEEEeccccccchhhhHHHH
Q 021210          170 TYFAKQGTKVIFSNGQLGMGTMKLSRLA  197 (316)
Q Consensus       170 ~~~~~~g~~vi~iSa~~g~gi~~L~~~L  197 (316)
                      ......+..++.+|+.++.|++++.+.+
T Consensus       128 ~~~~~~~~~~~~~s~~~~~~i~~~~~~l  155 (157)
T cd00882         128 QLAKELGVPYFETSAKTGENVEELFEEL  155 (157)
T ss_pred             HHHhhcCCcEEEEecCCCCChHHHHHHH
Confidence            1222334678999999999998887765

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd04149 Arf6 Arf6 subfamily

Probab=98.11  E-value=4.6e-06  Score=71.56  Aligned_cols=55  Identities=18%  Similarity=0.267  Sum_probs=37.8

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCcc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII  273 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~  273 (316)
                      .++|+++|.+|||||||+++|......  ...|.++.+...+.. ...+.++||||..
T Consensus         9 ~~kv~i~G~~~~GKTsli~~l~~~~~~--~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~   64 (168)
T cd04149           9 EMRILMLGLDAAGKTTILYKLKLGQSV--TTIPTVGFNVETVTYKNVKFNVWDVGGQD   64 (168)
T ss_pred             ccEEEEECcCCCCHHHHHHHHccCCCc--cccCCcccceEEEEECCEEEEEEECCCCH
Confidence            468999999999999999999865432  223433333322222 3358899999985

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=98.11  E-value=5.3e-06  Score=71.06  Aligned_cols=96  Identities=15%  Similarity=-0.043  Sum_probs=61.2

Q ss_pred             ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHH----hCCCCEEEEEEccCCCChHh----------
Q 021210          101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQW----LGNRKRILVLNREDMISMAD----------  164 (316)
Q Consensus       101 ~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~~~----l~~k~~IlVlNK~DLv~~~~----------  164 (316)
                      -++||+ .++.......++.+|.+|+|+|..++.+..+.  .+...    ..+.|+++|.||+|+.+...          
T Consensus        53 ~Dt~G~-~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~  131 (173)
T cd04130          53 CDTAGQ-DEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGE  131 (173)
T ss_pred             EECCCC-hhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCC
Confidence            445666 33433333467899999999999876443221  12211    13579999999999974321          


Q ss_pred             ----HHHHHHHHHhcCc-eEEEeccccccchhhhHHHH
Q 021210          165 ----RNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLA  197 (316)
Q Consensus       165 ----~~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~L  197 (316)
                          .++..++.++.+. .++.+||++|.|++++.+.+
T Consensus       132 ~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~  169 (173)
T cd04130         132 KPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTA  169 (173)
T ss_pred             CCcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHH
Confidence                1122233344454 78999999999999987653

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04125 RabA_like RabA-like subfamily

Probab=98.10  E-value=5.4e-06  Score=72.11  Aligned_cols=56  Identities=29%  Similarity=0.375  Sum_probs=37.1

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccc-cCCCCCceeeEEEEEeCC---cEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~-vs~~pgtT~~~~~~~~~~---~~~liDTPGi~  273 (316)
                      ++|+++|.+|||||||+|++.+..... ..+..|.+.....+.++.   .+.++||||..
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~   60 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQE   60 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcH
Confidence            369999999999999999999765322 222223333333344432   35799999964

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd00157 Rho Rho (Ras homology) family

Probab=98.10  E-value=6.1e-06  Score=69.80  Aligned_cols=56  Identities=23%  Similarity=0.296  Sum_probs=35.8

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee-EEEEEeC---CcEEEEeCCCccc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV-LKWVRFG---KDLEFLDSPGIIP  274 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~-~~~~~~~---~~~~liDTPGi~~  274 (316)
                      +||+++|.+|||||||+|+|.+.+. .....|..... .......   -.+.++||||...
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~   60 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKF-PTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEE   60 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeeeEEEEEECCEEEEEEEEeCCCccc
Confidence            4799999999999999999997763 22222221111 1111111   2478999999763

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>PLN03108 Rab family protein; Provisional

Probab=98.09  E-value=2.6e-05  Score=69.47  Aligned_cols=100  Identities=10%  Similarity=0.032  Sum_probs=64.9

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----CCCCEEEEEEccCCCChHh--HHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMAD--RNAWATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~~~l----~~k~~IlVlNK~DLv~~~~--~~~~~~~  171 (316)
                      +-++||+ ..+.......+..+|.+++|+|+.++.+..+.  .+....    ...|+++|.||+||.....  .++..++
T Consensus        59 l~Dt~G~-~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~  137 (210)
T PLN03108         59 IWDTAGQ-ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQF  137 (210)
T ss_pred             EEeCCCc-HHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHH
Confidence            4456776 45555556778899999999999765433221  111111    2578999999999975321  2222333


Q ss_pred             HHhcCceEEEeccccccchhhhHH-HHHHh
Q 021210          172 FAKQGTKVIFSNGQLGMGTMKLSR-LAKAL  200 (316)
Q Consensus       172 ~~~~g~~vi~iSa~~g~gi~~L~~-~L~~l  200 (316)
                      .+..+..++.+||+++.|++++.+ +++.+
T Consensus       138 ~~~~~~~~~e~Sa~~~~~v~e~f~~l~~~~  167 (210)
T PLN03108        138 AKEHGLIFMEASAKTAQNVEEAFIKTAAKI  167 (210)
T ss_pred             HHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            445567889999999999998654 33343

>cd04111 Rab39 Rab39 subfamily

Probab=98.09  E-value=1.5e-05  Score=71.17  Aligned_cols=100  Identities=17%  Similarity=0.043  Sum_probs=65.1

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHhC--CCCEEEEEEccCCCChHh--HHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWLG--NRKRILVLNREDMISMAD--RNAWAT  170 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l~--~k~~IlVlNK~DLv~~~~--~~~~~~  170 (316)
                      +-++||+ .++.......+.++|.+|+|+|..++.+..+     ..+.....  ..++++|.||+|+.+..+  .++..+
T Consensus        56 i~Dt~G~-~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~  134 (211)
T cd04111          56 LWDTAGQ-ERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEK  134 (211)
T ss_pred             EEeCCcc-hhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHH
Confidence            3466887 4555555577899999999999987643222     11111121  345788999999975322  112222


Q ss_pred             HHHhcCceEEEeccccccchhhhHHHHHHh
Q 021210          171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       171 ~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      +.+..+..++.+||++|.|++++.+.+.+.
T Consensus       135 ~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~  164 (211)
T cd04111         135 LAKDLGMKYIETSARTGDNVEEAFELLTQE  164 (211)
T ss_pred             HHHHhCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            333456788999999999999988876653

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04151 Arl1 Arl1 subfamily

Probab=98.09  E-value=4.6e-06  Score=70.22  Aligned_cols=53  Identities=23%  Similarity=0.340  Sum_probs=34.9

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCcc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII  273 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~  273 (316)
                      ||+++|.+|||||||+|+|.......  ..|.+..+...+.. +..+.++||||..
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~--~~~t~~~~~~~~~~~~~~~~i~Dt~G~~   54 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT--TIPTIGFNVETVTYKNLKFQVWDLGGQT   54 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC--cCCccCcCeEEEEECCEEEEEEECCCCH
Confidence            48999999999999999997655332  22321111212222 3457899999975

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04177 RSR1 RSR1 subgroup

Probab=98.09  E-value=6.4e-06  Score=70.14  Aligned_cols=55  Identities=25%  Similarity=0.302  Sum_probs=36.4

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeC---CcEEEEeCCCccc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG---KDLEFLDSPGIIP  274 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~---~~~~liDTPGi~~  274 (316)
                      .+|+++|.+|||||||+|++.+....  .....|+.+.  ..+..+   ..+.++||||...
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   61 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFI--ESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQ   61 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCC--cccCCcchheEEEEEEECCEEEEEEEEeCCCccc
Confidence            47999999999999999999866532  2222333221  222232   2467999999754

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04140 ARHI_like ARHI subfamily

Probab=98.09  E-value=3.8e-06  Score=71.35  Aligned_cols=54  Identities=28%  Similarity=0.336  Sum_probs=35.4

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCC---CceeeEEEEEeC---CcEEEEeCCCccc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP---GVTRVLKWVRFG---KDLEFLDSPGIIP  274 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~p---gtT~~~~~~~~~---~~~~liDTPGi~~  274 (316)
                      ++|+++|.+|||||||+|++++.... ....|   .+++.  .+..+   ..+.++||||...
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~-~~~~~t~~~~~~~--~~~~~~~~~~l~i~Dt~G~~~   61 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFR-ESYIPTIEDTYRQ--VISCSKNICTLQITDTTGSHQ   61 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCC-CCcCCcchheEEE--EEEECCEEEEEEEEECCCCCc
Confidence            57999999999999999999976532 12122   22221  11221   2477999999853

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd01892 Miro2 Miro2 subfamily

Probab=98.09  E-value=4.3e-06  Score=71.78  Aligned_cols=86  Identities=19%  Similarity=0.151  Sum_probs=55.4

Q ss_pred             HHHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh---CCCCEEEEEEccCCCChHhH--HHHHHHHHhcCc-eEEEeccccc
Q 021210          115 KDQLKLMDVVIEVRDARIPLSTTH-PLMDQWL---GNRKRILVLNREDMISMADR--NAWATYFAKQGT-KVIFSNGQLG  187 (316)
Q Consensus       115 ~~~i~~aDlIl~VvDar~~~~~~~-~~i~~~l---~~k~~IlVlNK~DLv~~~~~--~~~~~~~~~~g~-~vi~iSa~~g  187 (316)
                      ...++++|++|+|+|+.++.+..+ ..+...+   .+.|+++|+||+|+.+....  .+..++.+..+. .++.+||++|
T Consensus        72 ~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  151 (169)
T cd01892          72 DAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLG  151 (169)
T ss_pred             hhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccC
Confidence            345789999999999976533211 1222222   25799999999999654321  111222233443 3689999999


Q ss_pred             cchhhhHHHHHHh
Q 021210          188 MGTMKLSRLAKAL  200 (316)
Q Consensus       188 ~gi~~L~~~L~~l  200 (316)
                      .|++++.+.+.+.
T Consensus       152 ~~v~~lf~~l~~~  164 (169)
T cd01892         152 DSSNELFTKLATA  164 (169)
T ss_pred             ccHHHHHHHHHHH
Confidence            9999987776554

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=98.08  E-value=1.5e-05  Score=81.72  Aligned_cols=103  Identities=25%  Similarity=0.214  Sum_probs=72.5

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCC------hH--------
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMIS------MA--------  163 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~------~~--------  163 (316)
                      +.++||| ..|+..=....+.||++|+|+|..+++...-.+-.++|+  +.|+|+++||+|.+=      ..        
T Consensus       544 vIdtpgh-EsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkk  622 (1064)
T KOG1144|consen  544 VIDTPGH-ESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKK  622 (1064)
T ss_pred             EecCCCc-hhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHH
Confidence            7789999 556655457789999999999999887654433344454  679999999999651      11        


Q ss_pred             ----hHHHHH-------HHHHhcC---------------ceEEEeccccccchhhhHHHHHHhhhh
Q 021210          164 ----DRNAWA-------TYFAKQG---------------TKVIFSNGQLGMGTMKLSRLAKALASD  203 (316)
Q Consensus       164 ----~~~~~~-------~~~~~~g---------------~~vi~iSa~~g~gi~~L~~~L~~l~~~  203 (316)
                          -++++.       -.|..+|               +.++|+||..|+|+-+|.-+|.++.+.
T Consensus       623 Q~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk  688 (1064)
T KOG1144|consen  623 QKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQK  688 (1064)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHH
Confidence                012222       1233333               246899999999999999988887653

>cd01874 Cdc42 Cdc42 subfamily

Probab=98.08  E-value=1.2e-05  Score=69.56  Aligned_cols=97  Identities=11%  Similarity=-0.061  Sum_probs=61.5

Q ss_pred             cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHH----hCCCCEEEEEEccCCCChHhH----------
Q 021210          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQW----LGNRKRILVLNREDMISMADR----------  165 (316)
Q Consensus       102 ~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~~~----l~~k~~IlVlNK~DLv~~~~~----------  165 (316)
                      +++|+ .++.......+..+|++|+|+|..++.+..+.  .+...    ..+.|+++|.||+|+.+..+.          
T Consensus        55 Dt~G~-~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~  133 (175)
T cd01874          55 DTAGQ-EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQK  133 (175)
T ss_pred             ECCCc-cchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCC
Confidence            45666 44444334567899999999999876543322  12222    235799999999998654221          


Q ss_pred             ----HHHHHHHHhcC-ceEEEeccccccchhhhHHHHHH
Q 021210          166 ----NAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       166 ----~~~~~~~~~~g-~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                          ++-.+..++.+ ..++.+||++|.|++++.+.+..
T Consensus       134 ~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~  172 (175)
T cd01874         134 PITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAIL  172 (175)
T ss_pred             CcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHH
Confidence                11111222344 57899999999999988766543

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>PRK12740 elongation factor G; Reviewed

Probab=98.07  E-value=3.4e-05  Score=80.46  Aligned_cols=90  Identities=16%  Similarity=0.028  Sum_probs=67.7

Q ss_pred             CCCcchhhhhhccccCCcceEEEecccc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--C
Q 021210           71 NGSIEAYEEECDWADLDADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--G  146 (316)
Q Consensus        71 ~~~~g~~~e~e~~~~~d~~~~~~~~~~~--~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~  146 (316)
                      .+.|-...|++.+++++.....+.....  .+-++||| .++...+...+..+|++++|+|+..+.......+...+  .
T Consensus        33 ~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~-~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~  111 (668)
T PRK12740         33 TTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGH-VDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKY  111 (668)
T ss_pred             ccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCc-HHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHc
Confidence            4566677899999999887775554433  36789999 55777788889999999999999887654443333333  2


Q ss_pred             CCCEEEEEEccCCCC
Q 021210          147 NRKRILVLNREDMIS  161 (316)
Q Consensus       147 ~k~~IlVlNK~DLv~  161 (316)
                      +.|.++|+||+|+..
T Consensus       112 ~~p~iiv~NK~D~~~  126 (668)
T PRK12740        112 GVPRIIFVNKMDRAG  126 (668)
T ss_pred             CCCEEEEEECCCCCC
Confidence            689999999999863

>cd04123 Rab21 Rab21 subfamily

Probab=98.07  E-value=5.4e-06  Score=69.15  Aligned_cols=55  Identities=25%  Similarity=0.388  Sum_probs=35.8

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~  273 (316)
                      +||+++|.+|||||||+|+|.+..... ...+.++...  ..+....   .+.++||||-.
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~   60 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNE-KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE   60 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCC-CcCCccceeEEEEEEEECCEEEEEEEEECCchH
Confidence            369999999999999999999765322 2222232222  2222222   47799999953

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=98.07  E-value=1.1e-05  Score=72.61  Aligned_cols=98  Identities=12%  Similarity=-0.051  Sum_probs=63.4

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHhCCCCEEEEEEccCCCChHhHHHHHHHHHh
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLGNRKRILVLNREDMISMADRNAWATYFAK  174 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l~~k~~IlVlNK~DLv~~~~~~~~~~~~~~  174 (316)
                      +-+++|. .++..........+|.+|+|+|..+..+..+.     .+.....+.|+++|.||+|+.+.....+..++...
T Consensus        66 i~Dt~G~-~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~  144 (219)
T PLN03071         66 CWDTAGQ-EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRK  144 (219)
T ss_pred             EEECCCc-hhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHHHHHHh
Confidence            3456776 44444334567899999999999875433221     11122236799999999998643211111233344


Q ss_pred             cCceEEEeccccccchhhhHHHHH
Q 021210          175 QGTKVIFSNGQLGMGTMKLSRLAK  198 (316)
Q Consensus       175 ~g~~vi~iSa~~g~gi~~L~~~L~  198 (316)
                      .+..++.+||++|.|++++...+.
T Consensus       145 ~~~~~~e~SAk~~~~i~~~f~~l~  168 (219)
T PLN03071        145 KNLQYYEISAKSNYNFEKPFLYLA  168 (219)
T ss_pred             cCCEEEEcCCCCCCCHHHHHHHHH
Confidence            557789999999999998876554

>cd04122 Rab14 Rab14 subfamily

Probab=98.06  E-value=8.8e-06  Score=69.05  Aligned_cols=54  Identities=22%  Similarity=0.350  Sum_probs=36.5

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCcee---eEEEEEeCC---cEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR---VLKWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~---~~~~~~~~~---~~~liDTPGi~  273 (316)
                      +||+++|.+|||||||+|++.+...  ....+.|+.   ....+..+.   .+.++||||..
T Consensus         3 ~ki~iiG~~~vGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~   62 (166)
T cd04122           3 FKYIIIGDMGVGKSCLLHQFTEKKF--MADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQE   62 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCC--CCCCCcccceeEEEEEEEECCEEEEEEEEECCCcH
Confidence            5799999999999999999987643  223333322   122333432   46899999964

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04169 RF3 RF3 subfamily

Probab=98.06  E-value=4.8e-05  Score=70.72  Aligned_cols=86  Identities=14%  Similarity=0.043  Sum_probs=62.7

Q ss_pred             hhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCEE
Q 021210           76 AYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRI  151 (316)
Q Consensus        76 ~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~I  151 (316)
                      ...|++.+.++......|.....+  +-++||| .++...+...+..+|.+|+|+|+..+.......+.++.  .+.|++
T Consensus        49 ~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~-~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~i  127 (267)
T cd04169          49 MEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH-EDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPII  127 (267)
T ss_pred             cHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCc-hHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEE
Confidence            456777777777776655554433  6678999 56777788889999999999999877543333343333  378999


Q ss_pred             EEEEccCCCCh
Q 021210          152 LVLNREDMISM  162 (316)
Q Consensus       152 lVlNK~DLv~~  162 (316)
                      +++||+|+...
T Consensus       128 ivvNK~D~~~a  138 (267)
T cd04169         128 TFINKLDREGR  138 (267)
T ss_pred             EEEECCccCCC
Confidence            99999998644

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=98.06  E-value=1.3e-05  Score=84.59  Aligned_cols=59  Identities=31%  Similarity=0.509  Sum_probs=45.7

Q ss_pred             ccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe---CCcEEEEeCCCccc
Q 021210          215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP  274 (316)
Q Consensus       215 ~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~~  274 (316)
                      .++..|+++|.+|+|||||+++|.+... ..+..+|+|.+...+.+   +..+.|+||||...
T Consensus       288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v-~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~  349 (787)
T PRK05306        288 PRPPVVTIMGHVDHGKTSLLDAIRKTNV-AAGEAGGITQHIGAYQVETNGGKITFLDTPGHEA  349 (787)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCc-cccccCceeeeccEEEEEECCEEEEEEECCCCcc
Confidence            4567899999999999999999987553 44556788887654433   45689999999754

>cd04142 RRP22 RRP22 subfamily

Probab=98.05  E-value=2.1e-05  Score=69.60  Aligned_cols=84  Identities=14%  Similarity=-0.008  Sum_probs=54.6

Q ss_pred             HHHHhhcCeEEEEEeCCCCCCCCcH-H----HHHHh----CCCCEEEEEEccCCCChHh--HHHHHHHHH-hcCceEEEe
Q 021210          115 KDQLKLMDVVIEVRDARIPLSTTHP-L----MDQWL----GNRKRILVLNREDMISMAD--RNAWATYFA-KQGTKVIFS  182 (316)
Q Consensus       115 ~~~i~~aDlIl~VvDar~~~~~~~~-~----i~~~l----~~k~~IlVlNK~DLv~~~~--~~~~~~~~~-~~g~~vi~i  182 (316)
                      ...++.+|++|+|+|+.++.+..+. .    +.+..    .+.|+++|.||+|+.....  .++..+... ..+..++++
T Consensus        75 ~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~  154 (198)
T cd04142          75 FRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLEC  154 (198)
T ss_pred             HhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEe
Confidence            3457899999999999876433221 1    11111    3579999999999964321  111112222 235678999


Q ss_pred             ccccccchhhhHHHHH
Q 021210          183 NGQLGMGTMKLSRLAK  198 (316)
Q Consensus       183 Sa~~g~gi~~L~~~L~  198 (316)
                      ||++|.|+++|.+.+.
T Consensus       155 Sak~g~~v~~lf~~i~  170 (198)
T cd04142         155 SAKYNWHILLLFKELL  170 (198)
T ss_pred             cCCCCCCHHHHHHHHH
Confidence            9999999998876544

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04116 Rab9 Rab9 subfamily

Probab=98.05  E-value=3.2e-05  Score=65.71  Aligned_cols=97  Identities=7%  Similarity=-0.061  Sum_probs=63.4

Q ss_pred             ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHH---HHh-----CCCCEEEEEEccCCCChHh-HHHHH
Q 021210          101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMD---QWL-----GNRKRILVLNREDMISMAD-RNAWA  169 (316)
Q Consensus       101 ~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~---~~l-----~~k~~IlVlNK~DLv~~~~-~~~~~  169 (316)
                      -++||+ .++.......+..+|.+++|+|..++.+....  .+.   ...     .+.|+++|.||+|+..... .++..
T Consensus        59 ~D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~  137 (170)
T cd04116          59 WDTAGQ-ERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQ  137 (170)
T ss_pred             EeCCCh-HHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHH
Confidence            367887 55655556778999999999998765432221  111   111     1358999999999864321 22233


Q ss_pred             HHHHhcC-ceEEEeccccccchhhhHHHHH
Q 021210          170 TYFAKQG-TKVIFSNGQLGMGTMKLSRLAK  198 (316)
Q Consensus       170 ~~~~~~g-~~vi~iSa~~g~gi~~L~~~L~  198 (316)
                      ++..+.+ ..++.+||++|.|+.++.+.+.
T Consensus       138 ~~~~~~~~~~~~e~Sa~~~~~v~~~~~~~~  167 (170)
T cd04116         138 AWCRENGDYPYFETSAKDATNVAAAFEEAV  167 (170)
T ss_pred             HHHHHCCCCeEEEEECCCCCCHHHHHHHHH
Confidence            3344455 4688999999999988776543

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=98.05  E-value=2e-05  Score=83.21  Aligned_cols=81  Identities=21%  Similarity=0.084  Sum_probs=57.9

Q ss_pred             hhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCEEEEEEccCCCChHhHHHHHHHH-HhcCceEEEeccccccchhhhHH
Q 021210          119 KLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATYF-AKQGTKVIFSNGQLGMGTMKLSR  195 (316)
Q Consensus       119 ~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~IlVlNK~DLv~~~~~~~~~~~~-~~~g~~vi~iSa~~g~gi~~L~~  195 (316)
                      ..+|+++.|+|+.+..  ++..+...+  .++|+++|+||+|+.++.......+.+ +++|.+++++|+++|+|+++|++
T Consensus        84 ~~aD~vI~VvDat~le--r~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~  161 (772)
T PRK09554         84 GDADLLINVVDASNLE--RNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRGRGIEALKL  161 (772)
T ss_pred             cCCCEEEEEecCCcch--hhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecCCCHHHHHH
Confidence            4799999999998642  233332222  278999999999987543322222223 34678899999999999999998


Q ss_pred             HHHHhh
Q 021210          196 LAKALA  201 (316)
Q Consensus       196 ~L~~l~  201 (316)
                      .+.+..
T Consensus       162 ~I~~~~  167 (772)
T PRK09554        162 AIDRHQ  167 (772)
T ss_pred             HHHHhh
Confidence            877654

>cd04135 Tc10 TC10 subfamily

Probab=98.04  E-value=9e-06  Score=69.27  Aligned_cols=54  Identities=20%  Similarity=0.185  Sum_probs=35.4

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~  273 (316)
                      +||+++|.+|+|||||+|++.+...  ......++.+.  ..+.++.   .+.++||||-.
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~   59 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQE   59 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcc
Confidence            3799999999999999999987653  22222233322  1223332   25689999974

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>PRK12735 elongation factor Tu; Reviewed

Probab=98.04  E-value=7e-06  Score=80.43  Aligned_cols=58  Identities=22%  Similarity=0.361  Sum_probs=42.3

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcC------cccc---------cCCCCCceeeEEEEEe---CCcEEEEeCCCcc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKR------RMCP---------AAPRPGVTRVLKWVRF---GKDLEFLDSPGII  273 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~------~~~~---------vs~~pgtT~~~~~~~~---~~~~~liDTPGi~  273 (316)
                      ..++|+++|.+|+|||||+|+|++.      ....         -....|+|.+......   +..+.|+||||..
T Consensus        11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~   86 (396)
T PRK12735         11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA   86 (396)
T ss_pred             CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH
Confidence            4688999999999999999999852      1110         1124689988754444   3468999999963

>cd04116 Rab9 Rab9 subfamily

Probab=98.03  E-value=9.8e-06  Score=68.85  Aligned_cols=56  Identities=23%  Similarity=0.306  Sum_probs=36.2

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~  273 (316)
                      .++|+++|.+|||||||+|++.+... .....+..+.+.  ..+..+.   .+.|+||||-.
T Consensus         5 ~~ki~vvG~~~~GKTsli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~   65 (170)
T cd04116           5 LLKVILLGDGGVGKSSLMNRYVTNKF-DTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQE   65 (170)
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCC-CcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChH
Confidence            47899999999999999999986542 222223222221  2223322   36789999953

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=98.03  E-value=1.7e-05  Score=67.75  Aligned_cols=97  Identities=10%  Similarity=0.035  Sum_probs=61.1

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF  172 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~  172 (316)
                      +-++||+ .++.......+..+|++++|+|+.+..+..+  ..+..++     .++|+++|+||+|+.......+..+.+
T Consensus        47 i~D~~G~-~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~  125 (167)
T cd04161          47 IFDLGGG-ANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYL  125 (167)
T ss_pred             EEECCCc-HHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhc
Confidence            5667888 4455555678899999999999987542211  1222222     257999999999986543222232221


Q ss_pred             -----H-hcC--ceEEEeccccc------cchhhhHHHH
Q 021210          173 -----A-KQG--TKVIFSNGQLG------MGTMKLSRLA  197 (316)
Q Consensus       173 -----~-~~g--~~vi~iSa~~g------~gi~~L~~~L  197 (316)
                           . +.+  ..++.+||++|      .|+.+-.+.|
T Consensus       126 ~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl  164 (167)
T cd04161         126 SLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWL  164 (167)
T ss_pred             CcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHH
Confidence                 1 112  35677999998      6766655554

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=98.02  E-value=7e-06  Score=70.23  Aligned_cols=52  Identities=27%  Similarity=0.294  Sum_probs=36.6

Q ss_pred             EeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCcc
Q 021210          220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII  273 (316)
Q Consensus       220 i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~  273 (316)
                      |+++|.+|||||||+|+|.+.......+..|.++.  .+.. +..+.++||||-.
T Consensus         2 i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~--~~~~~~~~~~i~D~~G~~   54 (167)
T cd04161           2 LLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPT--KLRLDKYEVCIFDLGGGA   54 (167)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCCccccCcccceEE--EEEECCEEEEEEECCCcH
Confidence            78999999999999999997633333444454432  2222 3457899999964

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=98.02  E-value=3e-05  Score=70.65  Aligned_cols=98  Identities=11%  Similarity=0.004  Sum_probs=64.9

Q ss_pred             ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH------HHHHHhCCCCEEEEEEccCCCCh------------
Q 021210          101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP------LMDQWLGNRKRILVLNREDMISM------------  162 (316)
Q Consensus       101 ~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~------~i~~~l~~k~~IlVlNK~DLv~~------------  162 (316)
                      -+++|. .++.......+..+|++|+|+|..+..+..+.      .+.....+.|+++|.||+||...            
T Consensus        66 wDTaG~-e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~  144 (232)
T cd04174          66 WDTSGS-PYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQ  144 (232)
T ss_pred             EeCCCc-hhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccC
Confidence            345675 55555455678999999999999876544321      12222236789999999998531            


Q ss_pred             H--hHHHHHHHHHhcCc-eEEEecccccc-chhhhHHHHHH
Q 021210          163 A--DRNAWATYFAKQGT-KVIFSNGQLGM-GTMKLSRLAKA  199 (316)
Q Consensus       163 ~--~~~~~~~~~~~~g~-~vi~iSa~~g~-gi~~L~~~L~~  199 (316)
                      .  ..++..++.++.+. .++.+||++|. |++++...+..
T Consensus       145 ~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~  185 (232)
T cd04174         145 APISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASL  185 (232)
T ss_pred             CcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHH
Confidence            0  12233344455676 58899999997 79988766543

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01871 Rac1_like Rac1-like subfamily

Probab=98.02  E-value=1.9e-05  Score=68.23  Aligned_cols=98  Identities=15%  Similarity=-0.012  Sum_probs=62.3

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----CCCCEEEEEEccCCCChHh---------
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMAD---------  164 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~~~l----~~k~~IlVlNK~DLv~~~~---------  164 (316)
                      +-++||. .++.......+..+|++|+|+|..++.+..+.  .+...+    .+.|+++|.||+||.+...         
T Consensus        53 i~Dt~G~-~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~  131 (174)
T cd01871          53 LWDTAGQ-EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK  131 (174)
T ss_pred             EEECCCc-hhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhcc
Confidence            4456776 44444444567899999999999876443321  121211    2579999999999964211         


Q ss_pred             -----HHHHHHHHHhcC-ceEEEeccccccchhhhHHHHH
Q 021210          165 -----RNAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAK  198 (316)
Q Consensus       165 -----~~~~~~~~~~~g-~~vi~iSa~~g~gi~~L~~~L~  198 (316)
                           .++-.+..++.+ ..++.+||++|.|++++.+.+.
T Consensus       132 ~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~  171 (174)
T cd01871         132 LTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAI  171 (174)
T ss_pred             CCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHHH
Confidence                 111112233444 4788999999999999876653

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04124 RabL2 RabL2 subfamily

Probab=98.02  E-value=9.9e-06  Score=68.65  Aligned_cols=56  Identities=29%  Similarity=0.393  Sum_probs=34.5

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccC-CCCCceeeEEEEEeC-C--cEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAA-PRPGVTRVLKWVRFG-K--DLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs-~~pgtT~~~~~~~~~-~--~~~liDTPGi~  273 (316)
                      ++|+++|.+|||||||++++.+....... +..+.+........+ .  .+.++||||-.
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~   60 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQE   60 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCch
Confidence            47999999999999999999865432111 111112111122222 2  36799999964

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=98.01  E-value=7.2e-06  Score=84.13  Aligned_cols=59  Identities=25%  Similarity=0.411  Sum_probs=45.4

Q ss_pred             CccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe---CC-cEEEEeCCCcc
Q 021210          214 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GK-DLEFLDSPGII  273 (316)
Q Consensus       214 ~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~---~~-~~~liDTPGi~  273 (316)
                      ..++.+|+++|.+|+|||||+|+|.+... ..+..+|+|.+...+.+   +. .+.|+||||-.
T Consensus        84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v-~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe  146 (587)
T TIGR00487        84 VERPPVVTIMGHVDHGKTSLLDSIRKTKV-AQGEAGGITQHIGAYHVENEDGKMITFLDTPGHE  146 (587)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCc-ccccCCceeecceEEEEEECCCcEEEEEECCCCc
Confidence            34567899999999999999999997653 44556788888644332   33 79999999964

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd01870 RhoA_like RhoA-like subfamily

Probab=98.01  E-value=1.7e-05  Score=67.54  Aligned_cols=99  Identities=15%  Similarity=0.073  Sum_probs=61.1

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH------HHHHHhCCCCEEEEEEccCCCChHhH--------
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP------LMDQWLGNRKRILVLNREDMISMADR--------  165 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~------~i~~~l~~k~~IlVlNK~DLv~~~~~--------  165 (316)
                      +-++||+ .++.......+..+|++++|+|..+..+..+.      .+.....+.|+++|.||+|+.+....        
T Consensus        53 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~  131 (175)
T cd01870          53 LWDTAGQ-EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMK  131 (175)
T ss_pred             EEeCCCc-hhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhcc
Confidence            3356776 33443333557899999999998765322111      11112247899999999998753221        


Q ss_pred             ------HHHHHHHHhcC-ceEEEeccccccchhhhHHHHHH
Q 021210          166 ------NAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       166 ------~~~~~~~~~~g-~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                            .+-.+.....+ ..++.+||++|.|++++.+.+..
T Consensus       132 ~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~  172 (175)
T cd01870         132 QEPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMATR  172 (175)
T ss_pred             CCCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHH
Confidence                  11111122233 46899999999999998877653

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=98.01  E-value=4.8e-05  Score=65.30  Aligned_cols=102  Identities=12%  Similarity=-0.044  Sum_probs=65.4

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHh--CCCCEEEEEEccCCCChHh--HHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWL--GNRKRILVLNREDMISMAD--RNAWAT  170 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l--~~k~~IlVlNK~DLv~~~~--~~~~~~  170 (316)
                      +-++||+ .++...-......+|.+++|+|..+..+...     ..+.+..  .+.|+++|.||+|+....+  ......
T Consensus        53 l~D~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~  131 (180)
T cd04137          53 IVDTAGQ-DEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKE  131 (180)
T ss_pred             EEECCCh-HhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHH
Confidence            4467887 4444444467788999999999876432111     1112212  2569999999999874322  122223


Q ss_pred             HHHhcCceEEEeccccccchhhhHHHHHHhhh
Q 021210          171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKALAS  202 (316)
Q Consensus       171 ~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l~~  202 (316)
                      .....+..++.+||+++.|+.++...+.+...
T Consensus       132 ~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~  163 (180)
T cd04137         132 LAESWGAAFLESSARENENVEEAFELLIEEIE  163 (180)
T ss_pred             HHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            33444567899999999999998877665443

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=98.01  E-value=6.4e-06  Score=77.49  Aligned_cols=143  Identities=17%  Similarity=0.160  Sum_probs=97.9

Q ss_pred             CCCCCeeEEecCCCCCcCCCC-CCCCCCCc-chhhhhhccccCCcc----------eEEEeccccccccccchHHHHHHH
Q 021210           46 SSSAPIIQTVGGKQSSWHGGN-SNNSNGSI-EAYEEECDWADLDAD----------LYYWTKSLRPVQWYPGHIAKTEKE  113 (316)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-g~~~e~e~~~~~d~~----------~~~~~~~~~~i~~~Pgh~~~~~r~  113 (316)
                      ..+.|.|.++|-.-.    |+ .-...+++ -+..++.++.|+|+.          ...|++...++++.|-|...+++.
T Consensus       175 ~~s~pviavVGYTNa----GKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~A  250 (410)
T KOG0410|consen  175 GESSPVIAVVGYTNA----GKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQA  250 (410)
T ss_pred             cCCCceEEEEeecCc----cHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHH
Confidence            345668899885211    11 11222332 125678888888864          468899999999999999999999


Q ss_pred             HHHHHhhcCeEEEEEeCCCCCCCCcHH-HHHHhC--C---C----CEEEEEEccCCCChHhHHHHHHHHHhcCceEEEec
Q 021210          114 LKDQLKLMDVVIEVRDARIPLSTTHPL-MDQWLG--N---R----KRILVLNREDMISMADRNAWATYFAKQGTKVIFSN  183 (316)
Q Consensus       114 l~~~i~~aDlIl~VvDar~~~~~~~~~-i~~~l~--~---k----~~IlVlNK~DLv~~~~~~~~~~~~~~~g~~vi~iS  183 (316)
                      +.+.+..||++|+|+|..+|....+.. +..-+.  +   .    ..+=|-||+|..+...        .......+.+|
T Consensus       251 TLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~--------e~E~n~~v~is  322 (410)
T KOG0410|consen  251 TLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV--------EEEKNLDVGIS  322 (410)
T ss_pred             HHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccC--------ccccCCccccc
Confidence            999999999999999999987654432 222222  1   1    2456788888654321        11112368999


Q ss_pred             cccccchhhhHHHHHHh
Q 021210          184 GQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       184 a~~g~gi~~L~~~L~~l  200 (316)
                      |+.|+|.+++.+.+..-
T Consensus       323 altgdgl~el~~a~~~k  339 (410)
T KOG0410|consen  323 ALTGDGLEELLKAEETK  339 (410)
T ss_pred             cccCccHHHHHHHHHHH
Confidence            99999999988776543

>cd04135 Tc10 TC10 subfamily

Probab=98.01  E-value=1.1e-05  Score=68.72  Aligned_cols=98  Identities=12%  Similarity=-0.007  Sum_probs=60.5

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHH----HhCCCCEEEEEEccCCCChHhH--------
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQ----WLGNRKRILVLNREDMISMADR--------  165 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~~----~l~~k~~IlVlNK~DLv~~~~~--------  165 (316)
                      +-++||+ .++...-......+|++++|+|..++.+..+.  .+..    ...+.|+++|.||+|+.+....        
T Consensus        52 i~Dt~G~-~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~  130 (174)
T cd04135          52 LYDTAGQ-EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMK  130 (174)
T ss_pred             EEeCCCc-ccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhcc
Confidence            3456776 33333333457889999999998765432211  1111    2236899999999998643211        


Q ss_pred             ------HHHHHHHHhcC-ceEEEeccccccchhhhHHHHH
Q 021210          166 ------NAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAK  198 (316)
Q Consensus       166 ------~~~~~~~~~~g-~~vi~iSa~~g~gi~~L~~~L~  198 (316)
                            ++-.+..++.+ ..++.+||++|.|++++.+.+.
T Consensus       131 ~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~  170 (174)
T cd04135         131 EKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEAI  170 (174)
T ss_pred             CCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHH
Confidence                  11112233445 3688999999999998876543

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04110 Rab35 Rab35 subfamily

Probab=98.01  E-value=1.2e-05  Score=70.93  Aligned_cols=56  Identities=23%  Similarity=0.302  Sum_probs=36.3

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee--EEEEEeCC---cEEEEeCCCcc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~--~~~~~~~~---~~~liDTPGi~  273 (316)
                      .++|+++|.+|||||||++++.+... .....|..+.+  ...+..+.   .+.|+||||-.
T Consensus         6 ~~kivvvG~~~vGKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~   66 (199)
T cd04110           6 LFKLLIIGDSGVGKSSLLLRFADNTF-SGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQE   66 (199)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCC-CCCcCccccceeEEEEEEECCEEEEEEEEeCCCch
Confidence            46899999999999999999987652 11222222222  22222222   46799999954

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>PLN03110 Rab GTPase; Provisional

Probab=98.00  E-value=4.5e-05  Score=68.31  Aligned_cols=97  Identities=11%  Similarity=0.044  Sum_probs=65.5

Q ss_pred             ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--------CCCCEEEEEEccCCCChHhH--HHHHH
Q 021210          101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNREDMISMADR--NAWAT  170 (316)
Q Consensus       101 ~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--------~~k~~IlVlNK~DLv~~~~~--~~~~~  170 (316)
                      -++||+ .++.......+..+|.+|+|+|..++.+..+  +..++        .+.|+++|.||+||....+.  +....
T Consensus        66 ~Dt~G~-~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~--~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~  142 (216)
T PLN03110         66 WDTAGQ-ERYRAITSAYYRGAVGALLVYDITKRQTFDN--VQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQA  142 (216)
T ss_pred             EECCCc-HHHHHHHHHHhCCCCEEEEEEECCChHHHHH--HHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHH
Confidence            356787 5566666677899999999999987543322  22222        25789999999998643221  11222


Q ss_pred             HHHhcCceEEEeccccccchhhhHHHHHHh
Q 021210          171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       171 ~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      .....+..++.+||++|.|++++.+.+...
T Consensus       143 l~~~~~~~~~e~SA~~g~~v~~lf~~l~~~  172 (216)
T PLN03110        143 LAEKEGLSFLETSALEATNVEKAFQTILLE  172 (216)
T ss_pred             HHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            223346789999999999999988766443

>cd04158 ARD1 ARD1 subfamily

Probab=97.99  E-value=9.8e-06  Score=69.31  Aligned_cols=52  Identities=19%  Similarity=0.276  Sum_probs=35.6

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEe-CCcEEEEeCCCccc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRF-GKDLEFLDSPGIIP  274 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~-~~~~~liDTPGi~~  274 (316)
                      ||+++|.+|||||||+|+|.+...  ..  +..|...  ..+.. +..+.++||||...
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~--~~--~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~   55 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEF--MQ--PIPTIGFNVETVEYKNLKFTIWDVGGKHK   55 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCC--CC--cCCcCceeEEEEEECCEEEEEEECCCChh
Confidence            489999999999999999987632  22  2334332  22222 33578999999753

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=97.99  E-value=6.3e-06  Score=76.73  Aligned_cols=56  Identities=20%  Similarity=0.296  Sum_probs=38.8

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcc-----cccC------------CCCCceeeEEEEE---eCCcEEEEeCCCccc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRM-----CPAA------------PRPGVTRVLKWVR---FGKDLEFLDSPGIIP  274 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~-----~~vs------------~~pgtT~~~~~~~---~~~~~~liDTPGi~~  274 (316)
                      +|+++|.+|+|||||+|+|+....     ..+.            ...|+|++.....   .+..+.++||||...
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~d   76 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVD   76 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHH
Confidence            489999999999999999973211     1111            2347887753332   255788999999864

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=97.99  E-value=6.4e-06  Score=77.13  Aligned_cols=58  Identities=24%  Similarity=0.416  Sum_probs=34.5

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccC-CCC------CceeeE--EEEEe-----CCcEEEEeCCCccc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAA-PRP------GVTRVL--KWVRF-----GKDLEFLDSPGIIP  274 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs-~~p------gtT~~~--~~~~~-----~~~~~liDTPGi~~  274 (316)
                      .++|+++|.+|+|||||||+|.+....... ..+      ..|..+  ....+     .-++.++||||+-.
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd   75 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGD   75 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccc
Confidence            578999999999999999999987644432 111      011112  11222     12578999999864

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=97.99  E-value=1.3e-05  Score=68.40  Aligned_cols=55  Identities=22%  Similarity=0.372  Sum_probs=35.8

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~  273 (316)
                      ++|+++|.+|||||||+|++..... .....+..+.+.  ..+..+.   .+.++||||..
T Consensus         3 ~ki~vvG~~~vGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~   62 (170)
T cd04115           3 FKIIVIGDSNVGKTCLTYRFCAGRF-PERTEATIGVDFRERTVEIDGERIKVQLWDTAGQE   62 (170)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCC-CCccccceeEEEEEEEEEECCeEEEEEEEeCCChH
Confidence            5799999999999999999986542 111222222221  2233322   47899999964

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04176 Rap2 Rap2 subgroup

Probab=97.98  E-value=1.3e-05  Score=67.43  Aligned_cols=54  Identities=22%  Similarity=0.283  Sum_probs=35.3

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~  273 (316)
                      ++|+++|.+|||||||++++......  .....|+.+.  ..+.++.   .+.|+||||..
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~   60 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGTFI--EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTE   60 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCchhheEEEEEEECCEEEEEEEEECCCcc
Confidence            47999999999999999999865432  2222233221  2233322   36789999964

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=97.98  E-value=4.3e-05  Score=75.02  Aligned_cols=114  Identities=18%  Similarity=0.154  Sum_probs=83.1

Q ss_pred             cchhhhhhccccCCcce--EEEeccccccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHH-HhC-CCC
Q 021210           74 IEAYEEECDWADLDADL--YYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQ-WLG-NRK  149 (316)
Q Consensus        74 ~g~~~e~e~~~~~d~~~--~~~~~~~~~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~-~l~-~k~  149 (316)
                      |-.--|+|.++|+=+..  +.|....=-|-++||| +.+--+....++..|-++++|||..++...-.++.+ .+. +-+
T Consensus        44 DSnDlEkERGITILaKnTav~~~~~~INIvDTPGH-ADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~  122 (603)
T COG1217          44 DSNDLEKERGITILAKNTAVNYNGTRINIVDTPGH-ADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLK  122 (603)
T ss_pred             CccchhhhcCcEEEeccceeecCCeEEEEecCCCc-CCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCC
Confidence            33344888898865543  4666544458899999 888889999999999999999999988766555543 333 667


Q ss_pred             EEEEEEccCCCCh---HhHHHHHHHHHhcC-------ceEEEecccccc
Q 021210          150 RILVLNREDMISM---ADRNAWATYFAKQG-------TKVIFSNGQLGM  188 (316)
Q Consensus       150 ~IlVlNK~DLv~~---~~~~~~~~~~~~~g-------~~vi~iSa~~g~  188 (316)
                      .|+|+||+|..+.   +.+++..+.|.+++       .++++-|++.|.
T Consensus       123 PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~  171 (603)
T COG1217         123 PIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGT  171 (603)
T ss_pred             cEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCce
Confidence            8999999998642   23455555565554       578899998774

>cd04132 Rho4_like Rho4-like subfamily

Probab=97.98  E-value=1.2e-05  Score=69.64  Aligned_cols=55  Identities=22%  Similarity=0.271  Sum_probs=35.3

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE-EEEEeC--C--cEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFG--K--DLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~-~~~~~~--~--~~~liDTPGi~  273 (316)
                      ++|+++|.+|||||||+|++.+... .....|.+..+. ..+...  .  .+.++||||..
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~-~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~   60 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKF-PEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQE   60 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcC-CCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCch
Confidence            3799999999999999999997653 222222222221 122222  2  36799999953

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=97.97  E-value=4.3e-05  Score=65.21  Aligned_cols=101  Identities=15%  Similarity=0.082  Sum_probs=59.9

Q ss_pred             cccccchHHHHHHH-HHHHHhhcCeEEEEEeCCCCCCCCcH-HH----HHHh--CCCCEEEEEEccCCCChHhH--HHHH
Q 021210          100 VQWYPGHIAKTEKE-LKDQLKLMDVVIEVRDARIPLSTTHP-LM----DQWL--GNRKRILVLNREDMISMADR--NAWA  169 (316)
Q Consensus       100 i~~~Pgh~~~~~r~-l~~~i~~aDlIl~VvDar~~~~~~~~-~i----~~~l--~~k~~IlVlNK~DLv~~~~~--~~~~  169 (316)
                      +-+.||+ .++.+. ....+.++|.+++|+|+.++.+..+. .+    ....  .+.|+++|.||+|+....+.  +...
T Consensus        55 i~Dt~G~-~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~  133 (170)
T cd04115          55 LWDTAGQ-ERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQ  133 (170)
T ss_pred             EEeCCCh-HHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHH
Confidence            4456777 444433 44567899999999999876433221 11    1111  25799999999998643321  1112


Q ss_pred             HHHHhcCceEEEeccccccchhhhHHHHHHhh
Q 021210          170 TYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (316)
Q Consensus       170 ~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l~  201 (316)
                      +........++.+||+++.+...+.+.+..+.
T Consensus       134 ~~~~~~~~~~~e~Sa~~~~~~~~i~~~f~~l~  165 (170)
T cd04115         134 RFADAHSMPLFETSAKDPSENDHVEAIFMTLA  165 (170)
T ss_pred             HHHHHcCCcEEEEeccCCcCCCCHHHHHHHHH
Confidence            22233346788999999444444444444444

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd01875 RhoG RhoG subfamily

Probab=97.97  E-value=3e-05  Score=67.96  Aligned_cols=99  Identities=14%  Similarity=0.002  Sum_probs=63.8

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH--HHH----HhCCCCEEEEEEccCCCChHh---------
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQ----WLGNRKRILVLNREDMISMAD---------  164 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~--i~~----~l~~k~~IlVlNK~DLv~~~~---------  164 (316)
                      +-+++|+ .++..........+|++|+|+|..++.+..+..  +..    ...+.|+++|.||+||.+...         
T Consensus        55 i~Dt~G~-e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~  133 (191)
T cd01875          55 LWDTAGQ-EEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQG  133 (191)
T ss_pred             EEECCCc-hhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhcc
Confidence            3446777 555544445678999999999998765433221  111    123679999999999964321         


Q ss_pred             -----HHHHHHHHHhcC-ceEEEeccccccchhhhHHHHHH
Q 021210          165 -----RNAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       165 -----~~~~~~~~~~~g-~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                           .++-.++..+.+ ..++.+||++|.|++++.+.+.+
T Consensus       134 ~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~  174 (191)
T cd01875         134 QAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVR  174 (191)
T ss_pred             CCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHH
Confidence                 011112223445 47889999999999988776554

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04133 Rop_like Rop subfamily

Probab=97.97  E-value=1.8e-05  Score=68.93  Aligned_cols=98  Identities=12%  Similarity=-0.070  Sum_probs=64.0

Q ss_pred             ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----CCCCEEEEEEccCCCChH-----------
Q 021210          101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMA-----------  163 (316)
Q Consensus       101 ~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~~~l----~~k~~IlVlNK~DLv~~~-----------  163 (316)
                      -+++|+ .++.......+..+|.+|+|+|..+..+..+.  .+...+    .+.|+++|.||+||.+..           
T Consensus        54 ~Dt~G~-~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~  132 (176)
T cd04133          54 WDTAGQ-EDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASP  132 (176)
T ss_pred             EECCCC-ccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCC
Confidence            355666 44555455678999999999999876554332  111212    356899999999995431           


Q ss_pred             -hHHHHHHHHHhcCc-eEEEeccccccchhhhHHHHHH
Q 021210          164 -DRNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       164 -~~~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                       ..++-.++.++.+. .++.+||++|.|++++.+.+.+
T Consensus       133 v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~  170 (176)
T cd04133         133 ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIK  170 (176)
T ss_pred             CCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHH
Confidence             11222233334455 5889999999999988776554

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=97.97  E-value=1.5e-05  Score=81.91  Aligned_cols=80  Identities=21%  Similarity=0.136  Sum_probs=55.5

Q ss_pred             hhcCeEEEEEeCCCCCCCCcHHHH-HHh-CCCCEEEEEEccCCCChHhHHHHHHH-HHhcCceEEEeccccccchhhhHH
Q 021210          119 KLMDVVIEVRDARIPLSTTHPLMD-QWL-GNRKRILVLNREDMISMADRNAWATY-FAKQGTKVIFSNGQLGMGTMKLSR  195 (316)
Q Consensus       119 ~~aDlIl~VvDar~~~~~~~~~i~-~~l-~~k~~IlVlNK~DLv~~~~~~~~~~~-~~~~g~~vi~iSa~~g~gi~~L~~  195 (316)
                      +.+|+++.|+|+.+..  ++..+. ... .++|+++|+||+|+.+........+. -+..|.+++++||++|.|++++.+
T Consensus        71 ~~aDvvI~VvDat~le--r~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~  148 (591)
T TIGR00437        71 EKPDLVVNVVDASNLE--RNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKD  148 (591)
T ss_pred             cCCCEEEEEecCCcch--hhHHHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHH
Confidence            4799999999998632  222222 222 37899999999998654322211222 234578899999999999999988


Q ss_pred             HHHHh
Q 021210          196 LAKAL  200 (316)
Q Consensus       196 ~L~~l  200 (316)
                      .+.+.
T Consensus       149 ~i~~~  153 (591)
T TIGR00437       149 AIRKA  153 (591)
T ss_pred             HHHHH
Confidence            87654

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=97.96  E-value=3.2e-05  Score=72.61  Aligned_cols=98  Identities=15%  Similarity=0.139  Sum_probs=63.7

Q ss_pred             cccccchHHHH------HHHHHHHHhhcCeEEEEEeCCCCCCCC---cH-----HHHH---HhCCCCEEEEEEccCCCCh
Q 021210          100 VQWYPGHIAKT------EKELKDQLKLMDVVIEVRDARIPLSTT---HP-----LMDQ---WLGNRKRILVLNREDMISM  162 (316)
Q Consensus       100 i~~~Pgh~~~~------~r~l~~~i~~aDlIl~VvDar~~~~~~---~~-----~i~~---~l~~k~~IlVlNK~DLv~~  162 (316)
                      +++.||-+..+      --+..+.+++++.+++|+|...+....   ..     +++.   -+..+|.++|+||+|+.+.
T Consensus       248 VADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea  327 (366)
T KOG1489|consen  248 VADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA  327 (366)
T ss_pred             eccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH
Confidence            67788754322      225667899999999999998763211   10     1111   1347899999999998532


Q ss_pred             HhHHHHHHHH-HhcC-ceEEEeccccccchhhhHHHHHH
Q 021210          163 ADRNAWATYF-AKQG-TKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       163 ~~~~~~~~~~-~~~g-~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      ++  ..++.+ +.+. ..++++||+.++|+..|++.+..
T Consensus       328 e~--~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~lr~  364 (366)
T KOG1489|consen  328 EK--NLLSSLAKRLQNPHVVPVSAKSGEGLEELLNGLRE  364 (366)
T ss_pred             HH--HHHHHHHHHcCCCcEEEeeeccccchHHHHHHHhh
Confidence            22  222222 2222 45899999999999998877654

>cd04144 Ras2 Ras2 subfamily

Probab=97.96  E-value=1.1e-05  Score=70.55  Aligned_cols=53  Identities=25%  Similarity=0.242  Sum_probs=34.6

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeC-C--cEEEEeCCCcc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG-K--DLEFLDSPGII  273 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~-~--~~~liDTPGi~  273 (316)
                      +|+++|.+|||||||+|++.....  ....+.|+.+.  ....++ .  .+.|+||||..
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~   58 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHF--VETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQE   58 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCC--CccCCCchHhhEEEEEEECCEEEEEEEEECCCch
Confidence            489999999999999999986542  22233443321  122232 2  36789999964

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=97.96  E-value=1.5e-05  Score=68.12  Aligned_cols=56  Identities=18%  Similarity=0.174  Sum_probs=34.6

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcc-cccCCCCCceeeEEEEEeC---CcEEEEeCCCccc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKWVRFG---KDLEFLDSPGIIP  274 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~-~~vs~~pgtT~~~~~~~~~---~~~~liDTPGi~~  274 (316)
                      ||+++|.+|||||||+|+++.... ....+..+.......+...   -.+.++||||...
T Consensus         2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~   61 (166)
T cd00877           2 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEK   61 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChh
Confidence            689999999999999999985432 1112222222221112221   2478999999753

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>PLN03110 Rab GTPase; Provisional

Probab=97.96  E-value=1.5e-05  Score=71.37  Aligned_cols=56  Identities=14%  Similarity=0.279  Sum_probs=38.1

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee--EEEEEeCC---cEEEEeCCCcc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~--~~~~~~~~---~~~liDTPGi~  273 (316)
                      .+||+++|.+|||||||+++|.+... .....|.+..+  ...+.++.   .+.|+||||-.
T Consensus        12 ~~Ki~ivG~~~vGKStLi~~l~~~~~-~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~   72 (216)
T PLN03110         12 LFKIVLIGDSGVGKSNILSRFTRNEF-CLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE   72 (216)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcH
Confidence            47899999999999999999997653 22223332222  23333433   57899999964

>cd04109 Rab28 Rab28 subfamily

Probab=97.96  E-value=1.2e-05  Score=71.83  Aligned_cols=54  Identities=24%  Similarity=0.290  Sum_probs=36.5

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC----cEEEEeCCCc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK----DLEFLDSPGI  272 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~----~~~liDTPGi  272 (316)
                      +||+++|.+|||||||+|+|.+... .....|.++.+.  ..+.++.    .+.|+||||-
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~-~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~   60 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGF-GKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQ   60 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCC-CCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCc
Confidence            3689999999999999999987542 233334444343  2233322    4679999995

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04117 Rab15 Rab15 subfamily

Probab=97.96  E-value=4e-05  Score=64.97  Aligned_cols=97  Identities=11%  Similarity=0.028  Sum_probs=62.6

Q ss_pred             cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-H-HH---HHhC-CCCEEEEEEccCCCChHhH--HHHHHHHH
Q 021210          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L-MD---QWLG-NRKRILVLNREDMISMADR--NAWATYFA  173 (316)
Q Consensus       102 ~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-~-i~---~~l~-~k~~IlVlNK~DLv~~~~~--~~~~~~~~  173 (316)
                      +++|. .++..........+|++++|+|..+..+..+. . +.   .... +.|+++|.||+||.....+  ++-....+
T Consensus        55 D~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~  133 (161)
T cd04117          55 DTAGQ-ERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAK  133 (161)
T ss_pred             eCCCc-HhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHH
Confidence            45665 45655566778999999999998765332211 1 11   1111 4689999999999644321  12222233


Q ss_pred             hcCceEEEeccccccchhhhHHHHHH
Q 021210          174 KQGTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       174 ~~g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      ..+..++.+||++|.|++++...|.+
T Consensus       134 ~~~~~~~e~Sa~~~~~v~~~f~~l~~  159 (161)
T cd04117         134 EYGMDFFETSACTNSNIKESFTRLTE  159 (161)
T ss_pred             HcCCEEEEEeCCCCCCHHHHHHHHHh
Confidence            34567899999999999988776543

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=97.95  E-value=7.6e-05  Score=69.90  Aligned_cols=93  Identities=23%  Similarity=0.280  Sum_probs=67.0

Q ss_pred             HHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC---CCCEEEEEEccCCCChHh-----------------HHHHHHH
Q 021210          112 KELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG---NRKRILVLNREDMISMAD-----------------RNAWATY  171 (316)
Q Consensus       112 r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~---~k~~IlVlNK~DLv~~~~-----------------~~~~~~~  171 (316)
                      .+-+..+.+||+|+.|+|+.++-...++.+...+.   +.|-++|+||+|......                 ..+|.+.
T Consensus       147 q~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~  226 (379)
T KOG1423|consen  147 QNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEK  226 (379)
T ss_pred             hCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHH
Confidence            35567799999999999998765666776655543   678999999999765321                 1234444


Q ss_pred             HHhc----------C----ceEEEeccccccchhhhHHHHHHhhhhh
Q 021210          172 FAKQ----------G----TKVIFSNGQLGMGTMKLSRLAKALASDV  204 (316)
Q Consensus       172 ~~~~----------g----~~vi~iSa~~g~gi~~L~~~L~~l~~~~  204 (316)
                      |...          |    .+++++||++|+|+++|+++|...++..
T Consensus       227 f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~g  273 (379)
T KOG1423|consen  227 FTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPG  273 (379)
T ss_pred             hccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCC
Confidence            4221          1    2589999999999999999987765443

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=97.95  E-value=1.4e-05  Score=67.21  Aligned_cols=56  Identities=25%  Similarity=0.274  Sum_probs=34.8

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCce-eeE--EEEEe--C--CcEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT-RVL--KWVRF--G--KDLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT-~~~--~~~~~--~--~~~~liDTPGi~  273 (316)
                      ++|+++|.+|||||||+++|.............|+ -+.  ..+..  +  -.+.++||||..
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~   63 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQE   63 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHH
Confidence            47999999999999999999854221222222222 121  12222  1  247899999964

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04127 Rab27A Rab27a subfamily

Probab=97.95  E-value=1.3e-05  Score=68.68  Aligned_cols=25  Identities=20%  Similarity=0.368  Sum_probs=22.3

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      .+||+++|.+|||||||+|++.+..
T Consensus         4 ~~ki~ivG~~~vGKTsli~~~~~~~   28 (180)
T cd04127           4 LIKFLALGDSGVGKTSFLYQYTDNK   28 (180)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCC
Confidence            3689999999999999999998654

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>PLN03127 Elongation factor Tu; Provisional

Probab=97.95  E-value=1.2e-05  Score=80.07  Aligned_cols=59  Identities=22%  Similarity=0.351  Sum_probs=43.1

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcC------cccc---------cCCCCCceeeEEEEEe---CCcEEEEeCCCccc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKR------RMCP---------AAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP  274 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~------~~~~---------vs~~pgtT~~~~~~~~---~~~~~liDTPGi~~  274 (316)
                      ..++|+++|..|+|||||+++|.+.      ....         ....+|+|++.....+   +..+.++||||...
T Consensus        60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~  136 (447)
T PLN03127         60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD  136 (447)
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc
Confidence            3678999999999999999999732      1111         1223799999765544   34689999999853

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=97.94  E-value=1.4e-05  Score=67.78  Aligned_cols=54  Identities=19%  Similarity=0.292  Sum_probs=35.8

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~  273 (316)
                      +||+++|.+|||||||++++......  +..|.+..+...+.. ...+.++||||..
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~--~~~pt~g~~~~~~~~~~~~~~l~D~~G~~   55 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVETVEYKNISFTVWDVGGQD   55 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc--ccCCCCCcceEEEEECCEEEEEEECCCCH
Confidence            36999999999999999999654432  233322222222222 2357899999974

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04114 Rab30 Rab30 subfamily

Probab=97.93  E-value=1.5e-05  Score=67.42  Aligned_cols=56  Identities=20%  Similarity=0.329  Sum_probs=36.3

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEeCC---cEEEEeCCCcc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~~~---~~~liDTPGi~  273 (316)
                      ..+++++|.+|||||||++++.+... .....+.++.+..  .+..+.   .+.++||||..
T Consensus         7 ~~~v~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~   67 (169)
T cd04114           7 LFKIVLIGNAGVGKTCLVRRFTQGLF-PPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQE   67 (169)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcH
Confidence            36899999999999999999986542 2222233333321  223322   36789999974

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=97.93  E-value=1.5e-05  Score=69.31  Aligned_cols=55  Identities=20%  Similarity=0.301  Sum_probs=36.3

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCcc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII  273 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~  273 (316)
                      .++|+++|.+|||||||++++........  .|.+..+...+.. +-.+.++||||..
T Consensus        17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~~--~~T~~~~~~~~~~~~~~~~l~D~~G~~   72 (182)
T PTZ00133         17 EVRILMVGLDAAGKTTILYKLKLGEVVTT--IPTIGFNVETVEYKNLKFTMWDVGGQD   72 (182)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCcccc--CCccccceEEEEECCEEEEEEECCCCH
Confidence            46899999999999999999975443222  2322222222222 3357899999974

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=97.93  E-value=5.9e-05  Score=75.03  Aligned_cols=95  Identities=20%  Similarity=0.142  Sum_probs=61.2

Q ss_pred             cccccchHH--H-----HHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-CCCCEEEEEEccCCCChHhHHHHHHH
Q 021210          100 VQWYPGHIA--K-----TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-GNRKRILVLNREDMISMADRNAWATY  171 (316)
Q Consensus       100 i~~~Pgh~~--~-----~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l-~~k~~IlVlNK~DLv~~~~~~~~~~~  171 (316)
                      +-++||...  .     ..+.....++++|++++|+|+..+.+..+..+.... .++|+++|+||+|+... +...   +
T Consensus       255 l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~~l~~~~~~~~piIlV~NK~Dl~~~-~~~~---~  330 (442)
T TIGR00450       255 LLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDFLIIDLNKSKKPFILVLNKIDLKIN-SLEF---F  330 (442)
T ss_pred             EeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHHHHHHHhhCCCCEEEEEECccCCCc-chhh---h
Confidence            566777621  1     123345678999999999999887655443222222 36899999999999754 2222   2


Q ss_pred             HHhcCceEEEeccccccchhhhHHHHHH
Q 021210          172 FAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      ....+..++.+|+++ .|++++.+.+..
T Consensus       331 ~~~~~~~~~~vSak~-~gI~~~~~~L~~  357 (442)
T TIGR00450       331 VSSKVLNSSNLSAKQ-LKIKALVDLLTQ  357 (442)
T ss_pred             hhhcCCceEEEEEec-CCHHHHHHHHHH
Confidence            233455678899997 577776655444

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd04131 Rnd Rnd subfamily

Probab=97.92  E-value=3.8e-05  Score=66.76  Aligned_cols=98  Identities=12%  Similarity=-0.008  Sum_probs=62.5

Q ss_pred             ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHH----HHhCCCCEEEEEEccCCCCh------------
Q 021210          101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMD----QWLGNRKRILVLNREDMISM------------  162 (316)
Q Consensus       101 ~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~----~~l~~k~~IlVlNK~DLv~~------------  162 (316)
                      -+++|+ .++..........+|++|+|+|..++.+..+.  .+.    +...+.|+++|.||+||.+.            
T Consensus        54 wDt~G~-~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~  132 (178)
T cd04131          54 WDTSGS-PYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQ  132 (178)
T ss_pred             EECCCc-hhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCC
Confidence            345665 44544444567899999999999876544331  111    12236789999999998531            


Q ss_pred             --HhHHHHHHHHHhcCc-eEEEeccccccc-hhhhHHHHHH
Q 021210          163 --ADRNAWATYFAKQGT-KVIFSNGQLGMG-TMKLSRLAKA  199 (316)
Q Consensus       163 --~~~~~~~~~~~~~g~-~vi~iSa~~g~g-i~~L~~~L~~  199 (316)
                        -..++-.++.++.+. .++.+||++|.| ++++...+..
T Consensus       133 ~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~  173 (178)
T cd04131         133 APVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATM  173 (178)
T ss_pred             CCCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHH
Confidence              011222333445564 688999999995 9888765544

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=97.92  E-value=1.6e-05  Score=69.99  Aligned_cols=55  Identities=20%  Similarity=0.336  Sum_probs=35.8

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeC--C--cEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG--K--DLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~--~--~~~liDTPGi~  273 (316)
                      +||+++|.+|||||||+|++.+... .....|....+.  ..+..+  .  .+.++||||-.
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~-~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~   61 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIF-SQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQE   61 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCch
Confidence            3699999999999999999997542 112223222222  223333  2  36899999964

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=97.91  E-value=6.2e-06  Score=85.45  Aligned_cols=27  Identities=37%  Similarity=0.369  Sum_probs=23.4

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCccc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMC  243 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~  243 (316)
                      .++|+++|.+|+|||||+|+|+.....
T Consensus        24 ~~~i~iiGh~~~GKSTL~~~Ll~~~~~   50 (632)
T PRK05506         24 LLRFITCGSVDDGKSTLIGRLLYDSKM   50 (632)
T ss_pred             eeEEEEECCCCCChHHHHHHHHHHhCC
Confidence            578999999999999999999975443

>cd04143 Rhes_like Rhes_like subfamily

Probab=97.91  E-value=5.6e-05  Score=69.45  Aligned_cols=101  Identities=12%  Similarity=-0.063  Sum_probs=63.5

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHH----------hCCCCEEEEEEccCCCChH-
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQW----------LGNRKRILVLNREDMISMA-  163 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~----------l~~k~~IlVlNK~DLv~~~-  163 (316)
                      +-+++|+ ..+...-...+..+|++|+|+|..+..+..+.     ++...          ..+.|+++|.||+|+.... 
T Consensus        52 I~Dt~G~-~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~  130 (247)
T cd04143          52 ILDTSGN-HPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPRE  130 (247)
T ss_pred             EEECCCC-hhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccc
Confidence            4456776 33333223357899999999998865432211     11111          1257999999999997422 


Q ss_pred             -hHHHHHHHHHh-cCceEEEeccccccchhhhHHHHHHhh
Q 021210          164 -DRNAWATYFAK-QGTKVIFSNGQLGMGTMKLSRLAKALA  201 (316)
Q Consensus       164 -~~~~~~~~~~~-~g~~vi~iSa~~g~gi~~L~~~L~~l~  201 (316)
                       ..++..+.+.. .+..++.+||++|.|++++.+.+..+.
T Consensus       131 v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~~~  170 (247)
T cd04143         131 VQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLA  170 (247)
T ss_pred             cCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence             12223333322 245789999999999999988877654

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04177 RSR1 RSR1 subgroup

Probab=97.91  E-value=4.7e-05  Score=64.79  Aligned_cols=98  Identities=11%  Similarity=-0.043  Sum_probs=63.0

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHh--CCCCEEEEEEccCCCChHh--HHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWL--GNRKRILVLNREDMISMAD--RNAWAT  170 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l--~~k~~IlVlNK~DLv~~~~--~~~~~~  170 (316)
                      +-++||+ .++.......+..+|.+++|+|..++.+...     ..+.+..  .+.|++++.||+|+.+...  .++..+
T Consensus        53 i~Dt~G~-~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~  131 (168)
T cd04177          53 ILDTAGT-EQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVS  131 (168)
T ss_pred             EEeCCCc-ccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHH
Confidence            4467887 4455555567889999999999876532211     1121211  2579999999999865332  112222


Q ss_pred             HHHhcC-ceEEEeccccccchhhhHHHHH
Q 021210          171 YFAKQG-TKVIFSNGQLGMGTMKLSRLAK  198 (316)
Q Consensus       171 ~~~~~g-~~vi~iSa~~g~gi~~L~~~L~  198 (316)
                      ..++.+ ..++.+||++|.|++++.+.+.
T Consensus       132 ~~~~~~~~~~~~~SA~~~~~i~~~f~~i~  160 (168)
T cd04177         132 LSQQWGNVPFYETSARKRTNVDEVFIDLV  160 (168)
T ss_pred             HHHHcCCceEEEeeCCCCCCHHHHHHHHH
Confidence            223344 5789999999999988766543

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=97.90  E-value=2.1e-05  Score=67.87  Aligned_cols=55  Identities=18%  Similarity=0.260  Sum_probs=37.2

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCcc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII  273 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~  273 (316)
                      .++|+++|.+|||||||++++.....  ....|.+..+...+.. ...+.++||||..
T Consensus        13 ~~ki~l~G~~~~GKTsL~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~   68 (175)
T smart00177       13 EMRILMVGLDAAGKTTILYKLKLGES--VTTIPTIGFNVETVTYKNISFTVWDVGGQD   68 (175)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCC--CCcCCccccceEEEEECCEEEEEEECCCCh
Confidence            46899999999999999999964432  2233433333332332 2357899999974

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.90  E-value=7.7e-05  Score=70.85  Aligned_cols=98  Identities=18%  Similarity=0.234  Sum_probs=69.4

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCC---CCcHHHHHHhCCCCEEEEEEccCCCChHhHH----HHH---
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLS---TTHPLMDQWLGNRKRILVLNREDMISMADRN----AWA---  169 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~---~~~~~i~~~l~~k~~IlVlNK~DLv~~~~~~----~~~---  169 (316)
                      ..++||| ....|.+.....-.|+.++|+|+..+.-   .++..| ..+.-+++++|+||+|+.++.+..    +..   
T Consensus        74 lvDCPGH-asLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLii-g~~~c~klvvvinkid~lpE~qr~ski~k~~kk~  151 (522)
T KOG0461|consen   74 LVDCPGH-ASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLII-GELLCKKLVVVINKIDVLPENQRASKIEKSAKKV  151 (522)
T ss_pred             EEeCCCc-HHHHHHHHhhhheeeeeeEEEehhcccccccchhhhh-hhhhccceEEEEeccccccchhhhhHHHHHHHHH
Confidence            5689999 7788888888888999999999987653   333333 333357889999999998875422    222   


Q ss_pred             -HHHHhcC----ceEEEeccccc----cchhhhHHHHHH
Q 021210          170 -TYFAKQG----TKVIFSNGQLG----MGTMKLSRLAKA  199 (316)
Q Consensus       170 -~~~~~~g----~~vi~iSa~~g----~gi~~L~~~L~~  199 (316)
                       +.+++.+    .+++.+|+..|    +++.+|++.+.+
T Consensus       152 ~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s  190 (522)
T KOG0461|consen  152 RKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALES  190 (522)
T ss_pred             HHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHH
Confidence             2233333    46899999999    777777777654

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=97.89  E-value=9.5e-06  Score=78.19  Aligned_cols=125  Identities=16%  Similarity=0.186  Sum_probs=96.3

Q ss_pred             CCCCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCC----------CCC
Q 021210           69 NSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIP----------LST  136 (316)
Q Consensus        69 ~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~----------~~~  136 (316)
                      ++-+.|-...||+.+.|.++..-||.+..+.  |-+.||| ..+-.+|...+++||+.++|+.||.+          .+.
T Consensus       128 lsW~ldtn~EeR~kgKtvEvGrA~FEte~~~ftiLDApGH-k~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTR  206 (501)
T KOG0459|consen  128 LSWALDTNGEERDKGKTVEVGRAYFETENKRFTILDAPGH-KSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTR  206 (501)
T ss_pred             EEEEEcCchhhhhccceeeeeeEEEEecceeEEeeccCcc-cccchhhccccchhhhhhhhhhhhhchhhcccccccchh
Confidence            5566677777899999999999999998775  8899999 88999999999999999999999754          355


Q ss_pred             CcHHHHHHhCCCCEEEEEEccCCCChH-------hH-HHHHHHHHhcC------ceEEEeccccccchhhhH
Q 021210          137 THPLMDQWLGNRKRILVLNREDMISMA-------DR-NAWATYFAKQG------TKVIFSNGQLGMGTMKLS  194 (316)
Q Consensus       137 ~~~~i~~~l~~k~~IlVlNK~DLv~~~-------~~-~~~~~~~~~~g------~~vi~iSa~~g~gi~~L~  194 (316)
                      .|..+.+.++.++.|+++||||--..+       +. .+...+++.+|      ..++++|...|.++++..
T Consensus       207 Eha~Lakt~gv~~lVv~vNKMddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~  278 (501)
T KOG0459|consen  207 EHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT  278 (501)
T ss_pred             HHHHHHHhhccceEEEEEEeccCCccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence            567777778889999999999964221       11 11222334344      357899999999887654

>cd04111 Rab39 Rab39 subfamily

Probab=97.89  E-value=1.7e-05  Score=70.78  Aligned_cols=55  Identities=29%  Similarity=0.457  Sum_probs=37.0

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEe--CC--cEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF--GK--DLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~--~~--~~~liDTPGi~  273 (316)
                      .||+++|.+|||||||+|++.+....... .|.++.+..  .+.+  +.  .+.++||||-.
T Consensus         3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~-~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~   63 (211)
T cd04111           3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVS-DPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE   63 (211)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCC-CceeceEEEEEEEEECCCCEEEEEEEeCCcch
Confidence            57999999999999999999976543332 233333321  2222  22  47799999964

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=97.88  E-value=1.8e-05  Score=63.31  Aligned_cols=57  Identities=25%  Similarity=0.311  Sum_probs=36.6

Q ss_pred             EEeEeccCCCCcchhHHhhhcCccc---ccCCCCCceeeEEEEEeC---CcEEEEeCCCcccC
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMC---PAAPRPGVTRVLKWVRFG---KDLEFLDSPGIIPM  275 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~---~vs~~pgtT~~~~~~~~~---~~~~liDTPGi~~~  275 (316)
                      ||+++|.+||||||||++|.+....   ......+.|.........   ..+.+.|++|-...
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~   63 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEF   63 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCH
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCcccee
Confidence            5899999999999999999987654   122233444433332221   23678999998643

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=97.88  E-value=5.9e-05  Score=65.94  Aligned_cols=97  Identities=14%  Similarity=0.043  Sum_probs=62.3

Q ss_pred             cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHH----HHhCCCCEEEEEEccCCCCh-------------
Q 021210          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMD----QWLGNRKRILVLNREDMISM-------------  162 (316)
Q Consensus       102 ~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~----~~l~~k~~IlVlNK~DLv~~-------------  162 (316)
                      +++|. .++.......+..+|++|+|+|..++.+..+.  .+.    ....+.|+++|.||+||.+.             
T Consensus        59 DtaG~-e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~  137 (182)
T cd04172          59 DTSGS-PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQT  137 (182)
T ss_pred             ECCCc-hhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCC
Confidence            34554 44544444568899999999998876443321  111    22235789999999998531             


Q ss_pred             -HhHHHHHHHHHhcCc-eEEEeccccccc-hhhhHHHHHH
Q 021210          163 -ADRNAWATYFAKQGT-KVIFSNGQLGMG-TMKLSRLAKA  199 (316)
Q Consensus       163 -~~~~~~~~~~~~~g~-~vi~iSa~~g~g-i~~L~~~L~~  199 (316)
                       -..++-.++.++.+. .++.+||++|.| ++++...+..
T Consensus       138 ~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~  177 (182)
T cd04172         138 PVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATL  177 (182)
T ss_pred             CCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHH
Confidence             011223334445664 789999999998 9988765443

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04134 Rho3 Rho3 subfamily

Probab=97.88  E-value=3.3e-05  Score=67.48  Aligned_cols=99  Identities=12%  Similarity=0.029  Sum_probs=61.5

Q ss_pred             ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH------HHHHHhCCCCEEEEEEccCCCChHhHH--------
Q 021210          101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP------LMDQWLGNRKRILVLNREDMISMADRN--------  166 (316)
Q Consensus       101 ~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~------~i~~~l~~k~~IlVlNK~DLv~~~~~~--------  166 (316)
                      -+++|+ .++..........+|++++|+|..++.+..+.      .+.....+.|+++|.||+||....+..        
T Consensus        53 ~Dt~G~-~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~  131 (189)
T cd04134          53 WDTAGQ-EEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGK  131 (189)
T ss_pred             EECCCC-hhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccC
Confidence            355666 33322223456889999999998776433221      111112367999999999997543211        


Q ss_pred             ------HHHHHHHhcC-ceEEEeccccccchhhhHHHHHHh
Q 021210          167 ------AWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       167 ------~~~~~~~~~g-~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                            +-.+...+.+ ..++.+||++|.|++++.+.+.+.
T Consensus       132 ~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~  172 (189)
T cd04134         132 HTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAARV  172 (189)
T ss_pred             CCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHH
Confidence                  1112223334 568899999999999988766544

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=97.88  E-value=1.6e-05  Score=67.32  Aligned_cols=54  Identities=28%  Similarity=0.421  Sum_probs=36.2

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccCCCCCceee--EEEEEeCC---cEEEEeCCCccc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGIIP  274 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~--~~~~~~~~---~~~liDTPGi~~  274 (316)
                      +|+++|.+|||||||+++++....  .+..+.++..  ...+.++.   .+.++||||...
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~   59 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRF--IGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQ   59 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCcc--ccccCCChHHhceEEEEECCEEEEEEEEECCCCcc
Confidence            489999999999999999986432  3334444422  12223332   367999999874

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04148 RGK RGK subfamily

Probab=97.87  E-value=5.6e-05  Score=68.01  Aligned_cols=98  Identities=15%  Similarity=-0.024  Sum_probs=61.2

Q ss_pred             cccccchHHHHHHHHHHHHh-hcCeEEEEEeCCCCCCCCc-HHHHHHh------CCCCEEEEEEccCCCChHh--HHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLK-LMDVVIEVRDARIPLSTTH-PLMDQWL------GNRKRILVLNREDMISMAD--RNAWA  169 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~-~aDlIl~VvDar~~~~~~~-~~i~~~l------~~k~~IlVlNK~DLv~~~~--~~~~~  169 (316)
                      +-++||.. ...+  ...+. .+|++++|+|+.++.+..+ ..+...+      .+.|+++|.||+|+....+  .++..
T Consensus        54 i~Dt~G~~-~~~~--~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~  130 (221)
T cd04148          54 VIDHWEQE-MWTE--DSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGR  130 (221)
T ss_pred             EEeCCCcc-hHHH--hHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHH
Confidence            44567763 1111  12344 8999999999987643221 1111111      2579999999999975432  11122


Q ss_pred             HHHHhcCceEEEeccccccchhhhHHHHHHh
Q 021210          170 TYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       170 ~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      +.....+..++.+||++|.|++++.+.+...
T Consensus       131 ~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~~  161 (221)
T cd04148         131 ACAVVFDCKFIETSAGLQHNVDELLEGIVRQ  161 (221)
T ss_pred             HHHHHcCCeEEEecCCCCCCHHHHHHHHHHH
Confidence            2233446778999999999999988776543

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=97.87  E-value=2.2e-05  Score=66.89  Aligned_cols=53  Identities=25%  Similarity=0.276  Sum_probs=33.8

Q ss_pred             EeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE-EEEEeCC---cEEEEeCCCcc
Q 021210          220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       220 i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~-~~~~~~~---~~~liDTPGi~  273 (316)
                      |+++|.+|||||||+|++.+... .....|.+.... ..+.++.   .+.++||||..
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~   57 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAF-PEDYVPTVFENYSADVEVDGKPVELGLWDTAGQE   57 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCC-CCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCc
Confidence            57999999999999999997653 222223221111 1222322   37899999964

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=97.87  E-value=2.2e-05  Score=67.45  Aligned_cols=54  Identities=24%  Similarity=0.294  Sum_probs=35.8

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEeC---CcEEEEeCCCcc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG---KDLEFLDSPGII  273 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~~---~~~~liDTPGi~  273 (316)
                      +|+++|.+|||||||+|++.+... .-...|.+..+..  .+..+   ..+.++||||..
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~   60 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVF-DKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQE   60 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChH
Confidence            589999999999999999997642 2222233323332  22222   257899999974

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=97.86  E-value=5.7e-05  Score=71.67  Aligned_cols=104  Identities=21%  Similarity=0.275  Sum_probs=71.0

Q ss_pred             cccccchHHHHH------HHHHHHHhhcCeEEEEEeCCCCCCCCcH---------HHHHH---hCCCCEEEEEEccCCC-
Q 021210          100 VQWYPGHIAKTE------KELKDQLKLMDVVIEVRDARIPLSTTHP---------LMDQW---LGNRKRILVLNREDMI-  160 (316)
Q Consensus       100 i~~~Pgh~~~~~------r~l~~~i~~aDlIl~VvDar~~~~~~~~---------~i~~~---l~~k~~IlVlNK~DLv-  160 (316)
                      +++.||-++.+.      -+..+.++++-++++|+|...... +++         ++..+   |.+||.++|+||+|+. 
T Consensus       211 ~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~-~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~  289 (369)
T COG0536         211 VADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDG-RDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPL  289 (369)
T ss_pred             EecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccC-CCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCc
Confidence            788887754333      246677999999999999863221 111         12222   3489999999999954 


Q ss_pred             ChHhHHHHHHHHHhc-CceE-EEeccccccchhhhHHHHHHhhhhh
Q 021210          161 SMADRNAWATYFAKQ-GTKV-IFSNGQLGMGTMKLSRLAKALASDV  204 (316)
Q Consensus       161 ~~~~~~~~~~~~~~~-g~~v-i~iSa~~g~gi~~L~~~L~~l~~~~  204 (316)
                      +.++.++..+++.+. +... .++|+.+++|++.|...+.++....
T Consensus       290 ~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~  335 (369)
T COG0536         290 DEEELEELKKALAEALGWEVFYLISALTREGLDELLRALAELLEET  335 (369)
T ss_pred             CHHHHHHHHHHHHHhcCCCcceeeehhcccCHHHHHHHHHHHHHHh
Confidence            556666666666654 3332 3399999999999988877765543

>PLN03108 Rab family protein; Provisional

Probab=97.86  E-value=3.1e-05  Score=69.02  Aligned_cols=57  Identities=25%  Similarity=0.355  Sum_probs=37.6

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccC-CCCCceeeEEEEEeCC---cEEEEeCCCcc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAA-PRPGVTRVLKWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs-~~pgtT~~~~~~~~~~---~~~liDTPGi~  273 (316)
                      .+||+++|.+|||||||+|+|.+....... +..|.+.....+.++.   .+.++||||..
T Consensus         6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~   66 (210)
T PLN03108          6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE   66 (210)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcH
Confidence            368999999999999999999976532221 1223333232333322   46799999964

>PRK00049 elongation factor Tu; Reviewed

Probab=97.85  E-value=1.9e-05  Score=77.46  Aligned_cols=58  Identities=22%  Similarity=0.342  Sum_probs=42.7

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCc------ccc---------cCCCCCceeeEEEEEe---CCcEEEEeCCCcc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRR------MCP---------AAPRPGVTRVLKWVRF---GKDLEFLDSPGII  273 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~------~~~---------vs~~pgtT~~~~~~~~---~~~~~liDTPGi~  273 (316)
                      ..++|+++|.+|+|||||+++|++..      ...         -....|+|++......   +..+.++||||..
T Consensus        11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~   86 (396)
T PRK00049         11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA   86 (396)
T ss_pred             CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH
Confidence            45789999999999999999998631      001         1125789998765544   4468899999963

>PTZ00369 Ras-like protein; Provisional

Probab=97.85  E-value=3e-05  Score=67.64  Aligned_cols=56  Identities=21%  Similarity=0.239  Sum_probs=35.6

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee-E-EEEEeCC---cEEEEeCCCccc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV-L-KWVRFGK---DLEFLDSPGIIP  274 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~-~-~~~~~~~---~~~liDTPGi~~  274 (316)
                      .++|+++|.+|||||||++++.+....  .....|+.. . ..+.++.   .+.++||||...
T Consensus         5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~   65 (189)
T PTZ00369          5 EYKLVVVGGGGVGKSALTIQFIQNHFI--DEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEE   65 (189)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCC--cCcCCchhhEEEEEEEECCEEEEEEEEeCCCCcc
Confidence            468999999999999999999975432  112112111 1 1122322   366899999753

>cd04117 Rab15 Rab15 subfamily

Probab=97.84  E-value=3.2e-05  Score=65.54  Aligned_cols=54  Identities=19%  Similarity=0.303  Sum_probs=35.7

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~  273 (316)
                      +|+++|.+|||||||++++..... .....|....+.  ..+..+.   .+.++||||-.
T Consensus         2 ki~vvG~~~~GKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~   60 (161)
T cd04117           2 RLLLIGDSGVGKTCLLCRFTDNEF-HSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE   60 (161)
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcH
Confidence            689999999999999999987653 222233333322  2233332   46799999964

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=97.83  E-value=2.1e-05  Score=80.81  Aligned_cols=54  Identities=28%  Similarity=0.422  Sum_probs=40.2

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcc--cccCCCCCceeeEEEEEe---CCcEEEEeCCCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRM--CPAAPRPGVTRVLKWVRF---GKDLEFLDSPGI  272 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~--~~vs~~pgtT~~~~~~~~---~~~~~liDTPGi  272 (316)
                      .|+++|.+|+|||||+|+|.+...  ......+|+|.+.....+   +..+.++||||.
T Consensus         2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGh   60 (581)
T TIGR00475         2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGH   60 (581)
T ss_pred             EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCH
Confidence            589999999999999999997542  222335788988654333   346789999995

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>cd04148 RGK RGK subfamily

Probab=97.83  E-value=2.5e-05  Score=70.33  Aligned_cols=55  Identities=25%  Similarity=0.227  Sum_probs=34.7

Q ss_pred             EEeEeccCCCCcchhHHhhhcCccc-ccCCCCC-ceeeEEEEEe---CCcEEEEeCCCcc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPG-VTRVLKWVRF---GKDLEFLDSPGII  273 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~-~vs~~pg-tT~~~~~~~~---~~~~~liDTPGi~  273 (316)
                      ||+++|.+|||||||+|++...... .....++ .......+.+   ...+.++||||..
T Consensus         2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~   61 (221)
T cd04148           2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE   61 (221)
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc
Confidence            6999999999999999999755432 1111111 1111222232   2347899999986

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd01870 RhoA_like RhoA-like subfamily

Probab=97.83  E-value=3.7e-05  Score=65.47  Aligned_cols=53  Identities=21%  Similarity=0.198  Sum_probs=34.2

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccCCCCCceee--EEEEEeC-C--cEEEEeCCCcc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFG-K--DLEFLDSPGII  273 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~--~~~~~~~-~--~~~liDTPGi~  273 (316)
                      ||+++|.+|||||||++++.+....  .....|+.+  ...+.++ .  .+.++||||..
T Consensus         3 ki~iiG~~~~GKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~   60 (175)
T cd01870           3 KLVIVGDGACGKTCLLIVFSKDQFP--EVYVPTVFENYVADIEVDGKQVELALWDTAGQE   60 (175)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCC--CCCCCccccceEEEEEECCEEEEEEEEeCCCch
Confidence            6999999999999999999975422  112112211  1122232 2  46799999964

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04147 Ras_dva Ras-dva subfamily

Probab=97.82  E-value=2.5e-05  Score=68.68  Aligned_cols=54  Identities=28%  Similarity=0.390  Sum_probs=36.1

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCccc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP  274 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~~  274 (316)
                      ||+++|.+|||||||+|++++....  ..+..|+.+.  ..+.++.   .+.++||||...
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~   59 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFE--PKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYS   59 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCC--ccCCCchhhheeEEEEECCEEEEEEEEECCCchh
Confidence            4899999999999999999876532  2233333322  1233322   578999999753

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>PRK12736 elongation factor Tu; Reviewed

Probab=97.81  E-value=2.4e-05  Score=76.62  Aligned_cols=58  Identities=22%  Similarity=0.348  Sum_probs=42.6

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCc------ccc---------cCCCCCceeeEEEEEe---CCcEEEEeCCCcc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRR------MCP---------AAPRPGVTRVLKWVRF---GKDLEFLDSPGII  273 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~------~~~---------vs~~pgtT~~~~~~~~---~~~~~liDTPGi~  273 (316)
                      ..++|+++|.+++|||||+++|++..      ...         -....|+|.+......   +..+.++||||..
T Consensus        11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~   86 (394)
T PRK12736         11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHA   86 (394)
T ss_pred             CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHH
Confidence            46889999999999999999998631      111         1115689998765444   3468899999953

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=97.80  E-value=1.8e-05  Score=73.29  Aligned_cols=22  Identities=32%  Similarity=0.486  Sum_probs=19.7

Q ss_pred             EEeEeccCCCCcchhHHhhhcC
Q 021210          219 RAGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      +|+++|.+|+|||||+|+|+..
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~   22 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYA   22 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHh
Confidence            3799999999999999999853

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>TIGR00484 EF-G translation elongation factor EF-G

Probab=97.80  E-value=2.6e-05  Score=81.61  Aligned_cols=58  Identities=21%  Similarity=0.291  Sum_probs=41.0

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCccc-----ccCC------------CCCceeeEEEE---EeCCcEEEEeCCCcccC
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMC-----PAAP------------RPGVTRVLKWV---RFGKDLEFLDSPGIIPM  275 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~-----~vs~------------~pgtT~~~~~~---~~~~~~~liDTPGi~~~  275 (316)
                      .+|+++|.+|+|||||+|+|+.....     .+.+            ..|+|.+....   +.+..+.++||||....
T Consensus        11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~   88 (689)
T TIGR00484        11 RNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF   88 (689)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence            37999999999999999999743221     1211            35788775332   22557899999999753

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=97.80  E-value=0.00025  Score=65.55  Aligned_cols=115  Identities=15%  Similarity=0.040  Sum_probs=70.9

Q ss_pred             hhhhhccccCCcceEEEecccc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCEEE
Q 021210           77 YEEECDWADLDADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRIL  152 (316)
Q Consensus        77 ~~e~e~~~~~d~~~~~~~~~~~--~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~Il  152 (316)
                      ..|++.+.++......+.-.-.  .+-++||| .++...+...+..+|.+++|+|+..+.......+.+.+  .+.|.++
T Consensus        43 ~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~-~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~ii  121 (268)
T cd04170          43 PEEIKRKMSISTSVAPLEWKGHKINLIDTPGY-ADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRII  121 (268)
T ss_pred             HHHHhhcccccceeEEEEECCEEEEEEECcCH-HHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEE
Confidence            3455666666665544432222  36789999 56777888899999999999999887654433333333  2679999


Q ss_pred             EEEccCCCChHhHHHHHHHHHh-cCceEEE--eccccccchhhh
Q 021210          153 VLNREDMISMADRNAWATYFAK-QGTKVIF--SNGQLGMGTMKL  193 (316)
Q Consensus       153 VlNK~DLv~~~~~~~~~~~~~~-~g~~vi~--iSa~~g~gi~~L  193 (316)
                      ++||+|+.... ..+..+.+++ .+..+++  +....|.++..+
T Consensus       122 vvNK~D~~~~~-~~~~~~~l~~~~~~~~~~~~ip~~~~~~~~~~  164 (268)
T cd04170         122 FINKMDRERAD-FDKTLAALQEAFGRPVVPLQLPIGEGDDFKGV  164 (268)
T ss_pred             EEECCccCCCC-HHHHHHHHHHHhCCCeEEEEecccCCCceeEE
Confidence            99999987542 2222333332 3434443  334555554443

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=97.79  E-value=0.00013  Score=74.15  Aligned_cols=88  Identities=13%  Similarity=0.022  Sum_probs=63.6

Q ss_pred             cchhhhhhccccCCcceEEEecccc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCC
Q 021210           74 IEAYEEECDWADLDADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRK  149 (316)
Q Consensus        74 ~g~~~e~e~~~~~d~~~~~~~~~~~--~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~  149 (316)
                      |-...|++.++++......|.....  .+-++||| .++...+...+..+|.+|+|+|+..+.......+.+..  .+.|
T Consensus        55 D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~-~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iP  133 (526)
T PRK00741         55 DWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGH-EDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTP  133 (526)
T ss_pred             CCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCc-hhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCC
Confidence            3345577778887777665554333  36789999 66778888899999999999999887644333343333  3789


Q ss_pred             EEEEEEccCCCCh
Q 021210          150 RILVLNREDMISM  162 (316)
Q Consensus       150 ~IlVlNK~DLv~~  162 (316)
                      +++++||+|+...
T Consensus       134 iiv~iNK~D~~~a  146 (526)
T PRK00741        134 IFTFINKLDRDGR  146 (526)
T ss_pred             EEEEEECCccccc
Confidence            9999999998643

>cd04168 TetM_like Tet(M)-like subfamily

Probab=97.79  E-value=2.1e-05  Score=71.85  Aligned_cols=56  Identities=21%  Similarity=0.337  Sum_probs=36.2

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccc-----cCC------------CCCceeeEEEEE---eCCcEEEEeCCCccc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCP-----AAP------------RPGVTRVLKWVR---FGKDLEFLDSPGIIP  274 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~-----vs~------------~pgtT~~~~~~~---~~~~~~liDTPGi~~  274 (316)
                      +|+++|.+|+|||||+|+|+......     +..            .-|+|.+.....   .+.++.++||||...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~   76 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMD   76 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccc
Confidence            37999999999999999998642211     111            123343332222   245789999999864

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=97.79  E-value=5.1e-05  Score=68.19  Aligned_cols=59  Identities=20%  Similarity=0.166  Sum_probs=39.2

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcc-cccCCCCCceeeEEEEEeC---CcEEEEeCCCccc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKWVRFG---KDLEFLDSPGIIP  274 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~-~~vs~~pgtT~~~~~~~~~---~~~~liDTPGi~~  274 (316)
                      ..+||+++|.+|||||||++++..... ....+..|++.....+..+   -.+.++||||...
T Consensus        12 ~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~   74 (219)
T PLN03071         12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK   74 (219)
T ss_pred             CceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchh
Confidence            457899999999999999999875432 2233344444433223222   2578999999753

>PLN00223 ADP-ribosylation factor; Provisional

Probab=97.79  E-value=4.1e-05  Score=66.62  Aligned_cols=54  Identities=19%  Similarity=0.312  Sum_probs=36.4

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGI  272 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi  272 (316)
                      .++|+++|.+|||||||++++.......  ..|.+..+...+.. +-.+.++||||-
T Consensus        17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~~--~~pt~g~~~~~~~~~~~~~~i~D~~Gq   71 (181)
T PLN00223         17 EMRILMVGLDAAGKTTILYKLKLGEIVT--TIPTIGFNVETVEYKNISFTVWDVGGQ   71 (181)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCcc--ccCCcceeEEEEEECCEEEEEEECCCC
Confidence            3689999999999999999998644322  22322222222332 335889999995

>TIGR00485 EF-Tu translation elongation factor TU

Probab=97.78  E-value=3.4e-05  Score=75.56  Aligned_cols=58  Identities=21%  Similarity=0.343  Sum_probs=42.4

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcC------cccc---------cCCCCCceeeEEEEEe---CCcEEEEeCCCcc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKR------RMCP---------AAPRPGVTRVLKWVRF---GKDLEFLDSPGII  273 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~------~~~~---------vs~~pgtT~~~~~~~~---~~~~~liDTPGi~  273 (316)
                      ..++|+++|..|+|||||+++|++.      ....         -....|+|.+.....+   +..+.|+||||..
T Consensus        11 ~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~   86 (394)
T TIGR00485        11 PHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHA   86 (394)
T ss_pred             ceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchH
Confidence            3578999999999999999999842      1111         1123799999765555   3458899999974

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=97.78  E-value=3.6e-05  Score=65.88  Aligned_cols=54  Identities=22%  Similarity=0.136  Sum_probs=36.7

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEeCC---cEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~~~---~~~liDTPGi~  273 (316)
                      +|++++|.+|+|||||++++.+..  .....+.|+.+..  .+.++.   .+.++||||..
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~   59 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNG--YPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQD   59 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCceeeeeeEEEEECCEEEEEEEEECCCCh
Confidence            468999999999999999998654  2333444544421  122322   46789999974

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=97.77  E-value=4.2e-05  Score=67.80  Aligned_cols=56  Identities=23%  Similarity=0.337  Sum_probs=37.2

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee-EEEEEeCC----cEEEEeCCCccc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV-LKWVRFGK----DLEFLDSPGIIP  274 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~-~~~~~~~~----~~~liDTPGi~~  274 (316)
                      .+|+++|.+|||||||+|+|.+........ |..+.. ........    .+.++||+|...
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~   66 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYP-PTIGNLDPAKTIEPYRRNIKLQLWDTAGQEE   66 (219)
T ss_pred             EEEEEEcCCCccHHHHHHHHhcCcCcccCC-CceeeeeEEEEEEeCCCEEEEEeecCCCHHH
Confidence            689999999999999999999765433222 222222 22222222    378999999864

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=97.76  E-value=4.1e-05  Score=68.08  Aligned_cols=54  Identities=19%  Similarity=0.331  Sum_probs=36.6

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-----CCcEEEEeCCCccc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-----GKDLEFLDSPGIIP  274 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-----~~~~~liDTPGi~~  274 (316)
                      +|+++|.+|+|||||++.|.......  ..+.++.....+..     +..+.|+||||-..
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~--t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~   60 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRS--TVTSIEPNVATFILNSEGKGKKFRLVDVPGHPK   60 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCC--ccCcEeecceEEEeecCCCCceEEEEECCCCHH
Confidence            48999999999999999999764322  22223333222222     34689999999764

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=97.76  E-value=2.7e-05  Score=79.97  Aligned_cols=35  Identities=20%  Similarity=0.404  Sum_probs=26.5

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCC-ceee
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-VTRV  254 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pg-tT~~  254 (316)
                      .-|+++|.+|+|||||+|+|.+...  +...|| +|++
T Consensus         5 piV~IiG~~d~GKTSLln~l~~~~v--~~~e~ggiTq~   40 (590)
T TIGR00491         5 PIVSVLGHVDHGKTTLLDKIRGSAV--AKREAGGITQH   40 (590)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccc--ccccCCceecc
Confidence            3599999999999999999998753  233344 6654

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=97.76  E-value=5.7e-05  Score=65.01  Aligned_cols=54  Identities=20%  Similarity=0.266  Sum_probs=35.0

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee-EE-EEEeCC---cEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV-LK-WVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~-~~-~~~~~~---~~~liDTPGi~  273 (316)
                      ++|+++|.+|||||||++++......  .....|+.+ .. .+.++.   .+.|+||||..
T Consensus         3 ~ki~vvG~~~vGKTsL~~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~   61 (172)
T cd04141           3 YKIVMLGAGGVGKSAVTMQFISHSFP--DYHDPTIEDAYKQQARIDNEPALLDILDTAGQA   61 (172)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCC--CCcCCcccceEEEEEEECCEEEEEEEEeCCCch
Confidence            57999999999999999999865432  111122221 11 222322   36799999964

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=97.76  E-value=0.00016  Score=65.76  Aligned_cols=48  Identities=17%  Similarity=0.214  Sum_probs=36.8

Q ss_pred             CCEEEEEEccCCCChHhHHHHHHHHHhcCceEEEeccccccchhhhHHHHHHh
Q 021210          148 RKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       148 k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      .|.++|+||+|+++.++...+.    + ...++++||++|.|+++|.+.+.+.
T Consensus       177 ~p~iiV~NK~Dl~~~~~~~~~~----~-~~~~~~~SA~~g~gi~~l~~~i~~~  224 (233)
T cd01896         177 IPCLYVYNKIDLISIEELDLLA----R-QPNSVVISAEKGLNLDELKERIWDK  224 (233)
T ss_pred             eeEEEEEECccCCCHHHHHHHh----c-CCCEEEEcCCCCCCHHHHHHHHHHH
Confidence            3889999999998877655332    2 2458899999999999988876553

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd04126 Rab20 Rab20 subfamily

Probab=97.76  E-value=3.7e-05  Score=69.48  Aligned_cols=55  Identities=24%  Similarity=0.384  Sum_probs=35.8

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCccc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGIIP  274 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~~  274 (316)
                      ++|+++|.+|||||||++++.......  ..|-+..+...... .-.+.|+||||-..
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~--~~~Tig~~~~~~~~~~~~l~iwDt~G~e~   56 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD--TVSTVGGAFYLKQWGPYNISIWDTAGREQ   56 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC--CCCccceEEEEEEeeEEEEEEEeCCCccc
Confidence            368999999999999999999766422  22211112211111 22578999999753

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>CHL00189 infB translation initiation factor 2; Provisional

Probab=97.74  E-value=2.8e-05  Score=81.53  Aligned_cols=58  Identities=26%  Similarity=0.477  Sum_probs=43.0

Q ss_pred             ccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEE--e-----CCcEEEEeCCCcc
Q 021210          215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-----GKDLEFLDSPGII  273 (316)
Q Consensus       215 ~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~--~-----~~~~~liDTPGi~  273 (316)
                      .++..|+++|.+|+|||||+++|.+... ..+..+|+|.+...+.  .     +..+.|+||||..
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~-~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe  306 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKTQI-AQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHE  306 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhccC-ccccCCccccccceEEEEEEecCCceEEEEEECCcHH
Confidence            4567899999999999999999987653 3455577887643222  1     2468999999974

>cd01873 RhoBTB RhoBTB subfamily

Probab=97.74  E-value=8.8e-05  Score=65.58  Aligned_cols=82  Identities=15%  Similarity=-0.039  Sum_probs=55.9

Q ss_pred             HHhhcCeEEEEEeCCCCCCCCcH--HHHHH----hCCCCEEEEEEccCCCCh-------------------H--hHHHHH
Q 021210          117 QLKLMDVVIEVRDARIPLSTTHP--LMDQW----LGNRKRILVLNREDMISM-------------------A--DRNAWA  169 (316)
Q Consensus       117 ~i~~aDlIl~VvDar~~~~~~~~--~i~~~----l~~k~~IlVlNK~DLv~~-------------------~--~~~~~~  169 (316)
                      ....+|++|+|+|..+..+..+.  .+...    ..+.|+++|.||+||.+.                   .  ..++..
T Consensus        84 ~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~  163 (195)
T cd01873          84 AYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGR  163 (195)
T ss_pred             cCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCHHHHH
Confidence            57899999999999876543322  12121    235689999999998631                   0  112233


Q ss_pred             HHHHhcCceEEEeccccccchhhhHHHHH
Q 021210          170 TYFAKQGTKVIFSNGQLGMGTMKLSRLAK  198 (316)
Q Consensus       170 ~~~~~~g~~vi~iSa~~g~gi~~L~~~L~  198 (316)
                      +..++.|..++.+||++|.|++++.+.+.
T Consensus       164 ~~a~~~~~~~~E~SAkt~~~V~e~F~~~~  192 (195)
T cd01873         164 AVAKELGIPYYETSVVTQFGVKDVFDNAI  192 (195)
T ss_pred             HHHHHhCCEEEEcCCCCCCCHHHHHHHHH
Confidence            34455677889999999999998876554

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=97.74  E-value=2.6e-05  Score=65.70  Aligned_cols=45  Identities=24%  Similarity=0.408  Sum_probs=32.0

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEeCCcEEEEeCCCcc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGII  273 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~~~~~~liDTPGi~  273 (316)
                      ||++||.+++|||||+++|.+...     ...-|..+..   ..  .+|||||=.
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~-----~~~KTq~i~~---~~--~~IDTPGEy   47 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEI-----RYKKTQAIEY---YD--NTIDTPGEY   47 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCC-----CcCccceeEe---cc--cEEECChhh
Confidence            589999999999999999998652     1223433332   22  359999964

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd01882 BMS1 Bms1

Probab=97.73  E-value=0.00023  Score=64.39  Aligned_cols=84  Identities=21%  Similarity=0.228  Sum_probs=56.7

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCE-EEEEEccCCCChHh-HHHHHHH----
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKR-ILVLNREDMISMAD-RNAWATY----  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~-IlVlNK~DLv~~~~-~~~~~~~----  171 (316)
                      +-++||+.    ..+.+.++.+|++++|+|+..+....+..+...+.  +.|. ++|+||+|+++..+ .++..+.    
T Consensus        87 ~vDtPg~~----~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~  162 (225)
T cd01882          87 FIECPNDI----NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHR  162 (225)
T ss_pred             EEeCCchH----HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHH
Confidence            44778874    55667789999999999999877766666666553  4565 45999999984322 2222222    


Q ss_pred             HH-h--cCceEEEeccccc
Q 021210          172 FA-K--QGTKVIFSNGQLG  187 (316)
Q Consensus       172 ~~-~--~g~~vi~iSa~~g  187 (316)
                      +. +  .+.+++++||++.
T Consensus       163 ~~~~~~~~~ki~~iSa~~~  181 (225)
T cd01882         163 FWTEVYQGAKLFYLSGIVH  181 (225)
T ss_pred             HHHhhCCCCcEEEEeeccC
Confidence            22 1  1357899998865

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PRK07560 elongation factor EF-2; Reviewed

Probab=97.72  E-value=0.00015  Score=76.43  Aligned_cols=90  Identities=18%  Similarity=0.096  Sum_probs=67.7

Q ss_pred             CCCCcchhhhhhccccCCcceE--EEec--ccc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHH
Q 021210           70 SNGSIEAYEEECDWADLDADLY--YWTK--SLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQ  143 (316)
Q Consensus        70 ~~~~~g~~~e~e~~~~~d~~~~--~~~~--~~~--~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~  143 (316)
                      +.+.|-...|++.+++++....  .|..  ...  .+-++||| .++..++...+..+|.+|+|+|+..+.......+.+
T Consensus        55 ~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~-~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~  133 (731)
T PRK07560         55 QLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH-VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLR  133 (731)
T ss_pred             ceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc-cChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHH
Confidence            4467777889999999998765  4421  111  26789999 557888999999999999999999887665544444


Q ss_pred             H-h-CCCCEEEEEEccCCC
Q 021210          144 W-L-GNRKRILVLNREDMI  160 (316)
Q Consensus       144 ~-l-~~k~~IlVlNK~DLv  160 (316)
                      . . .+.|.|+++||+|+.
T Consensus       134 ~~~~~~~~~iv~iNK~D~~  152 (731)
T PRK07560        134 QALRERVKPVLFINKVDRL  152 (731)
T ss_pred             HHHHcCCCeEEEEECchhh
Confidence            3 2 256889999999986

>PRK00007 elongation factor G; Reviewed

Probab=97.72  E-value=3.4e-05  Score=80.88  Aligned_cols=57  Identities=19%  Similarity=0.269  Sum_probs=41.0

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcc-----cccC------------CCCCceeeEEE---EEeCCcEEEEeCCCccc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRM-----CPAA------------PRPGVTRVLKW---VRFGKDLEFLDSPGIIP  274 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~-----~~vs------------~~pgtT~~~~~---~~~~~~~~liDTPGi~~  274 (316)
                      .+|+++|.+|+|||||+|+|+....     ..++            ...|+|++...   .+.+..+.|+||||...
T Consensus        11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~   87 (693)
T PRK00007         11 RNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD   87 (693)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH
Confidence            4799999999999999999973211     1122            25688887533   23366799999999864

>cd04169 RF3 RF3 subfamily

Probab=97.70  E-value=5.8e-05  Score=70.17  Aligned_cols=22  Identities=32%  Similarity=0.542  Sum_probs=20.0

Q ss_pred             EEeEeccCCCCcchhHHhhhcC
Q 021210          219 RAGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      +|+++|.+|+|||||+|+|+..
T Consensus         4 ni~ivGh~~~GKTTL~e~ll~~   25 (267)
T cd04169           4 TFAIISHPDAGKTTLTEKLLLF   25 (267)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHh
Confidence            5899999999999999999853

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=97.69  E-value=3.1e-05  Score=62.26  Aligned_cols=51  Identities=31%  Similarity=0.382  Sum_probs=32.5

Q ss_pred             EeccCCCCcchhHHhhhcCcccccCCCCCce-eeEEEE--Ee---CCcEEEEeCCCccc
Q 021210          222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVT-RVLKWV--RF---GKDLEFLDSPGIIP  274 (316)
Q Consensus       222 ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT-~~~~~~--~~---~~~~~liDTPGi~~  274 (316)
                      ++|.+|+|||||+|+|.+..... .. ..+| .+....  ..   ...+.++||||...
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~-~~-~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~   57 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVP-EE-YETTIIDFYSKTIEVDGKKVKLQIWDTAGQER   57 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCC-cc-cccchhheeeEEEEECCEEEEEEEEecCChHH
Confidence            58999999999999999766421 11 1122 222111  11   33578999999764

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd04134 Rho3 Rho3 subfamily

Probab=97.69  E-value=8e-05  Score=65.00  Aligned_cols=54  Identities=20%  Similarity=0.253  Sum_probs=34.4

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE-EEEEeC---CcEEEEeCCCcc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFG---KDLEFLDSPGII  273 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~-~~~~~~---~~~~liDTPGi~  273 (316)
                      +|+++|.+|||||||++++.+..... ...|...... ..+..+   ..+.|+||||-.
T Consensus         2 kivivG~~~vGKTsli~~~~~~~~~~-~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~   59 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFTRGYFPQ-VYEPTVFENYVHDIFVDGLHIELSLWDTAGQE   59 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCC-ccCCcceeeeEEEEEECCEEEEEEEEECCCCh
Confidence            68999999999999999998765322 1112211111 122222   247899999974

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>PLN03126 Elongation factor Tu; Provisional

Probab=97.69  E-value=5.5e-05  Score=75.88  Aligned_cols=58  Identities=24%  Similarity=0.369  Sum_probs=41.9

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCccc---------------ccCCCCCceeeEEEEEe---CCcEEEEeCCCcc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMC---------------PAAPRPGVTRVLKWVRF---GKDLEFLDSPGII  273 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~---------------~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~  273 (316)
                      ..++++++|.+|+|||||+++|+.....               .-....|+|.+.....+   +..+.|+||||..
T Consensus        80 ~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~  155 (478)
T PLN03126         80 PHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHA  155 (478)
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHH
Confidence            4678999999999999999999953211               11223588887644333   4578999999963

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=97.68  E-value=3e-05  Score=67.18  Aligned_cols=83  Identities=16%  Similarity=0.182  Sum_probs=55.1

Q ss_pred             HHHhhcCeEEEEEeCCCCCC--CCcHHHHHHhC-----CCCEEEEEEccCCCChHhHHHHHHHHH--h----cCceEEEe
Q 021210          116 DQLKLMDVVIEVRDARIPLS--TTHPLMDQWLG-----NRKRILVLNREDMISMADRNAWATYFA--K----QGTKVIFS  182 (316)
Q Consensus       116 ~~i~~aDlIl~VvDar~~~~--~~~~~i~~~l~-----~k~~IlVlNK~DLv~~~~~~~~~~~~~--~----~g~~vi~i  182 (316)
                      .....+|.+|+|+|+.+...  .....+..++.     +.|+++++||.|+.+....++..+.+.  +    ....++.+
T Consensus        77 ~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~  156 (175)
T PF00025_consen   77 SYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSC  156 (175)
T ss_dssp             GGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEE
T ss_pred             eeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEee
Confidence            45788999999999986431  11223344433     579999999999865433333333331  1    22568889


Q ss_pred             ccccccchhhhHHHHH
Q 021210          183 NGQLGMGTMKLSRLAK  198 (316)
Q Consensus       183 Sa~~g~gi~~L~~~L~  198 (316)
                      |+.+|+|+.+..+.|.
T Consensus       157 sa~~g~Gv~e~l~WL~  172 (175)
T PF00025_consen  157 SAKTGEGVDEGLEWLI  172 (175)
T ss_dssp             BTTTTBTHHHHHHHHH
T ss_pred             eccCCcCHHHHHHHHH
Confidence            9999999888776654

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd01874 Cdc42 Cdc42 subfamily

Probab=97.68  E-value=9.5e-05  Score=63.86  Aligned_cols=55  Identities=20%  Similarity=0.258  Sum_probs=36.0

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee-EE-EEEeCC---cEEEEeCCCccc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV-LK-WVRFGK---DLEFLDSPGIIP  274 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~-~~-~~~~~~---~~~liDTPGi~~  274 (316)
                      +||+++|.+|||||||++++.....  ......|+.+ .. .+..+.   .+.|+||+|-..
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~   61 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED   61 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeEEEEEECCEEEEEEEEECCCccc
Confidence            5799999999999999999986542  1222223322 21 222332   467999999753

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>PRK12739 elongation factor G; Reviewed

Probab=97.67  E-value=3.9e-05  Score=80.34  Aligned_cols=58  Identities=21%  Similarity=0.346  Sum_probs=41.2

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCc-----ccccC------------CCCCceeeEEEE---EeCCcEEEEeCCCccc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRR-----MCPAA------------PRPGVTRVLKWV---RFGKDLEFLDSPGIIP  274 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~-----~~~vs------------~~pgtT~~~~~~---~~~~~~~liDTPGi~~  274 (316)
                      ..+|+++|.+|+|||||+|+|+...     ...+.            ...|+|.+....   +.+..+.++||||...
T Consensus         8 irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~   85 (691)
T PRK12739          8 TRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD   85 (691)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence            3479999999999999999997421     11122            246888875432   2255789999999864

>PTZ00416 elongation factor 2; Provisional

Probab=97.67  E-value=0.0001  Score=78.78  Aligned_cols=89  Identities=15%  Similarity=0.117  Sum_probs=69.3

Q ss_pred             CCCcchhhhhhccccCCcce--EEEecc--------cc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc
Q 021210           71 NGSIEAYEEECDWADLDADL--YYWTKS--------LR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH  138 (316)
Q Consensus        71 ~~~~g~~~e~e~~~~~d~~~--~~~~~~--------~~--~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~  138 (316)
                      .++|-...|++.+++++...  ..|...        -.  .+.++||| .++..++...+..+|.+|+|+|+..++....
T Consensus        55 ~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liDtPG~-~~f~~~~~~al~~~D~ailVvda~~g~~~~t  133 (836)
T PTZ00416         55 RFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLIDSPGH-VDFSSEVTAALRVTDGALVVVDCVEGVCVQT  133 (836)
T ss_pred             eecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEcCCCH-HhHHHHHHHHHhcCCeEEEEEECCCCcCccH
Confidence            35677778999999998653  456522        11  26789999 6688889999999999999999999887666


Q ss_pred             HHHHHHhC--CCCEEEEEEccCCC
Q 021210          139 PLMDQWLG--NRKRILVLNREDMI  160 (316)
Q Consensus       139 ~~i~~~l~--~k~~IlVlNK~DLv  160 (316)
                      ..+.+.+.  ++|+++++||+|+.
T Consensus       134 ~~~~~~~~~~~~p~iv~iNK~D~~  157 (836)
T PTZ00416        134 ETVLRQALQERIRPVLFINKVDRA  157 (836)
T ss_pred             HHHHHHHHHcCCCEEEEEEChhhh
Confidence            55555543  67999999999987

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.66  E-value=0.00056  Score=60.24  Aligned_cols=102  Identities=14%  Similarity=0.082  Sum_probs=71.1

Q ss_pred             cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHhC-----CCCEEEEEEccCCCChHhHH--HHHHHH
Q 021210          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG-----NRKRILVLNREDMISMADRN--AWATYF  172 (316)
Q Consensus       102 ~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l~-----~k~~IlVlNK~DLv~~~~~~--~~~~~~  172 (316)
                      |.-...+++.--+...+.+++++|.|.|..+-.+..+  ..|.....     ..-+++|.||.||+++.+..  +-....
T Consensus        76 WDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kA  155 (221)
T KOG0094|consen   76 WDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKA  155 (221)
T ss_pred             EecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHH
Confidence            3333348888888899999999999999987655433  22333332     12457899999999886522  222334


Q ss_pred             HhcCceEEEeccccccchhhhHHHHHHhhhh
Q 021210          173 AKQGTKVIFSNGQLGMGTMKLSRLAKALASD  203 (316)
Q Consensus       173 ~~~g~~vi~iSa~~g~gi~~L~~~L~~l~~~  203 (316)
                      ++++..++.+||+.|.|+++|.+.+.....+
T Consensus       156 kel~a~f~etsak~g~NVk~lFrrIaa~l~~  186 (221)
T KOG0094|consen  156 KELNAEFIETSAKAGENVKQLFRRIAAALPG  186 (221)
T ss_pred             HHhCcEEEEecccCCCCHHHHHHHHHHhccC
Confidence            5567788999999999999888776655443

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=97.66  E-value=6.7e-05  Score=63.97  Aligned_cols=54  Identities=20%  Similarity=0.189  Sum_probs=34.2

Q ss_pred             EeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCccc
Q 021210          220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGIIP  274 (316)
Q Consensus       220 i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~~  274 (316)
                      |+++|.+|||||||++++.+... .....|-+..+...+.. +..+.++||||-..
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~-~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~   56 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERS-LESVVPTTGFNSVAIPTQDAIMELLEIGGSQN   56 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCC-cccccccCCcceEEEeeCCeEEEEEECCCCcc
Confidence            78999999999999999997642 11112211112212222 33578999999753

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>PRK13351 elongation factor G; Reviewed

Probab=97.65  E-value=0.0004  Score=72.76  Aligned_cols=90  Identities=14%  Similarity=0.103  Sum_probs=65.7

Q ss_pred             CCcchhhhhhccccCCcceEEEecccc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--C
Q 021210           72 GSIEAYEEECDWADLDADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--N  147 (316)
Q Consensus        72 ~~~g~~~e~e~~~~~d~~~~~~~~~~~--~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~  147 (316)
                      +.|-...|++.+++++.....+.-...  .+-++||| .++...+...+..+|.+++|+|+..+.......+...+.  +
T Consensus        47 ~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~-~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~  125 (687)
T PRK13351         47 VTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGH-IDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYG  125 (687)
T ss_pred             cCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCc-HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcC
Confidence            345555678888888876664433333  36688999 567788889999999999999998876544444433332  6


Q ss_pred             CCEEEEEEccCCCCh
Q 021210          148 RKRILVLNREDMISM  162 (316)
Q Consensus       148 k~~IlVlNK~DLv~~  162 (316)
                      .|+++++||+|+...
T Consensus       126 ~p~iiviNK~D~~~~  140 (687)
T PRK13351        126 IPRLIFINKMDRVGA  140 (687)
T ss_pred             CCEEEEEECCCCCCC
Confidence            899999999998754

>TIGR00503 prfC peptide chain release factor 3

Probab=97.64  E-value=0.00023  Score=72.32  Aligned_cols=88  Identities=15%  Similarity=0.029  Sum_probs=64.1

Q ss_pred             CcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCC
Q 021210           73 SIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNR  148 (316)
Q Consensus        73 ~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k  148 (316)
                      .|-...|++.++++......|......  +-++||| ..+...+...+..+|.+|+|+|+..+.......+.+..  .+.
T Consensus        55 ~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG~-~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~  133 (527)
T TIGR00503        55 SDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGH-EDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDT  133 (527)
T ss_pred             CCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCCh-hhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            344456777888887776655543333  6689999 67888888999999999999999876544333343333  368


Q ss_pred             CEEEEEEccCCCC
Q 021210          149 KRILVLNREDMIS  161 (316)
Q Consensus       149 ~~IlVlNK~DLv~  161 (316)
                      |+++++||+|+..
T Consensus       134 PiivviNKiD~~~  146 (527)
T TIGR00503       134 PIFTFMNKLDRDI  146 (527)
T ss_pred             CEEEEEECccccC
Confidence            9999999999863

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=97.63  E-value=0.00018  Score=74.95  Aligned_cols=92  Identities=17%  Similarity=0.167  Sum_probs=75.4

Q ss_pred             CCCCcchhhhhhccccCCcceE--EEec-cccccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC
Q 021210           70 SNGSIEAYEEECDWADLDADLY--YWTK-SLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG  146 (316)
Q Consensus        70 ~~~~~g~~~e~e~~~~~d~~~~--~~~~-~~~~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~  146 (316)
                      +-++|-.-.|++.++|+..+..  +|.. ..=.+.++||| ..+..++...+.-+|.++.|+|+..+....-..+.+...
T Consensus        47 ~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH-VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~  125 (697)
T COG0480          47 AATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH-VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQAD  125 (697)
T ss_pred             CccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc-cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHh
Confidence            5567777889999999988877  5553 33348899999 889999999999999999999999988776666655544


Q ss_pred             --CCCEEEEEEccCCCCh
Q 021210          147 --NRKRILVLNREDMISM  162 (316)
Q Consensus       147 --~k~~IlVlNK~DLv~~  162 (316)
                        +.|+++++||+|.+..
T Consensus       126 ~~~vp~i~fiNKmDR~~a  143 (697)
T COG0480         126 KYGVPRILFVNKMDRLGA  143 (697)
T ss_pred             hcCCCeEEEEECcccccc
Confidence              5699999999998754

>PRK04004 translation initiation factor IF-2; Validated

Probab=97.63  E-value=7e-05  Score=76.95  Aligned_cols=26  Identities=19%  Similarity=0.360  Sum_probs=22.7

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      ++..|+++|.+|+|||||+|+|.+..
T Consensus         5 R~p~V~i~Gh~~~GKTSLl~~l~~~~   30 (586)
T PRK04004          5 RQPIVVVLGHVDHGKTTLLDKIRGTA   30 (586)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcc
Confidence            45569999999999999999998664

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=97.62  E-value=0.00027  Score=75.73  Aligned_cols=89  Identities=15%  Similarity=0.127  Sum_probs=68.8

Q ss_pred             CCCcchhhhhhccccCCcce--EEEecc--------------cc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCC
Q 021210           71 NGSIEAYEEECDWADLDADL--YYWTKS--------------LR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARI  132 (316)
Q Consensus        71 ~~~~g~~~e~e~~~~~d~~~--~~~~~~--------------~~--~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~  132 (316)
                      .+.|-...|++.+++++...  ..|...              ..  .+-++||| ..+..++...+..+|.+|+|+|+..
T Consensus        55 ~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~inliDtPGh-~dF~~e~~~al~~~D~ailVvda~~  133 (843)
T PLN00116         55 RMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNEYLINLIDSPGH-VDFSSEVTAALRITDGALVVVDCIE  133 (843)
T ss_pred             eeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCceEEEEECCCCH-HHHHHHHHHHHhhcCEEEEEEECCC
Confidence            45677788999999988654  355310              11  26789999 7899999999999999999999999


Q ss_pred             CCCCCcHHHHHHh--CCCCEEEEEEccCCC
Q 021210          133 PLSTTHPLMDQWL--GNRKRILVLNREDMI  160 (316)
Q Consensus       133 ~~~~~~~~i~~~l--~~k~~IlVlNK~DLv  160 (316)
                      +.......+.+..  .++|+++++||+|+.
T Consensus       134 Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~  163 (843)
T PLN00116        134 GVCVQTETVLRQALGERIRPVLTVNKMDRC  163 (843)
T ss_pred             CCcccHHHHHHHHHHCCCCEEEEEECCccc
Confidence            8866555544443  268999999999987

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=97.62  E-value=7.8e-05  Score=77.02  Aligned_cols=54  Identities=26%  Similarity=0.458  Sum_probs=40.7

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcc--cccCCCCCceeeEEEEEe----CCcEEEEeCCCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRM--CPAAPRPGVTRVLKWVRF----GKDLEFLDSPGI  272 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~--~~vs~~pgtT~~~~~~~~----~~~~~liDTPGi  272 (316)
                      -|+++|.+|+|||||+|+|.+.+.  .......|+|.+.....+    +..+.++||||.
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGh   61 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGH   61 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCH
Confidence            379999999999999999997542  233345699988754333    345789999996

>cd01882 BMS1 Bms1

Probab=97.61  E-value=8.6e-05  Score=67.17  Aligned_cols=57  Identities=28%  Similarity=0.447  Sum_probs=39.3

Q ss_pred             ccceEEeEeccCCCCcchhHHhhhcC-cccccCCCCCceeeEEEEEeCCcEEEEeCCCcc
Q 021210          215 PRAVRAGIVGYPNVGKSSLINRLLKR-RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGII  273 (316)
Q Consensus       215 ~~~~~i~ivG~pNvGKSTLiN~L~~~-~~~~vs~~pgtT~~~~~~~~~~~~~liDTPGi~  273 (316)
                      ..+..|+++|.+|+|||||+|+|.+. ....++...|+. .+ ....+..+.++||||..
T Consensus        37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~i-~i-~~~~~~~i~~vDtPg~~   94 (225)
T cd01882          37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPI-TV-VTGKKRRLTFIECPNDI   94 (225)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccccE-EE-EecCCceEEEEeCCchH
Confidence            44667999999999999999999875 223344445532 11 11235678999999954

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.59  E-value=6.9e-05  Score=71.97  Aligned_cols=59  Identities=27%  Similarity=0.346  Sum_probs=38.9

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccc------cCCCCCceeeEEE--EEe-C----CcEEEEeCCCccc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP------AAPRPGVTRVLKW--VRF-G----KDLEFLDSPGIIP  274 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~------vs~~pgtT~~~~~--~~~-~----~~~~liDTPGi~~  274 (316)
                      ..++++++|.+|.|||||||+|+......      .+..+.-|..+..  ..+ .    -++.++||||+-+
T Consensus        20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD   91 (366)
T KOG2655|consen   20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGD   91 (366)
T ss_pred             CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcc
Confidence            46789999999999999999999763221      2223333433322  222 1    1478999999954

>cd04143 Rhes_like Rhes_like subfamily

Probab=97.58  E-value=9.8e-05  Score=67.83  Aligned_cols=54  Identities=26%  Similarity=0.431  Sum_probs=36.4

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCccc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP  274 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~~  274 (316)
                      +|+++|.+|||||||+|++.+....  .....|+.+.  ..+.++.   .+.|+||+|...
T Consensus         2 KVvvlG~~gvGKTSLi~r~~~~~f~--~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~   60 (247)
T cd04143           2 RMVVLGASKVGKTAIVSRFLGGRFE--EQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHP   60 (247)
T ss_pred             EEEEECcCCCCHHHHHHHHHcCCCC--CCCCCChhHhEEEEEEECCEEEEEEEEECCCChh
Confidence            6899999999999999999865422  2333344332  2333432   367999999753

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.58  E-value=0.00048  Score=60.65  Aligned_cols=127  Identities=14%  Similarity=0.101  Sum_probs=82.5

Q ss_pred             CCCCCCcchhhhhhccccCCcceEEEecccc----ccc-c-ccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--
Q 021210           68 NNSNGSIEAYEEECDWADLDADLYYWTKSLR----PVQ-W-YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--  139 (316)
Q Consensus        68 ~~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~----~i~-~-~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--  139 (316)
                      -+-+|++|...|+ +..|+.++...=+-.+.    ++| | +-|. +++...+....+.|+-||+|.|...-.+..+.  
T Consensus        25 L~~Rf~~~~f~e~-~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQ-ERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~  102 (205)
T KOG0084|consen   25 LLLRFKDDTFTES-YISTIGVDFKIRTVELDGKTIKLQIWDTAGQ-ERFRTITSSYYRGAHGIIFVYDITKQESFNNVKR  102 (205)
T ss_pred             hhhhhccCCcchh-hcceeeeEEEEEEeeecceEEEEEeeecccc-HHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHH
Confidence            3567788877654 55667776664433322    222 3 4454 88888888999999999999999764433221  


Q ss_pred             ---HHHHHhC-CCCEEEEEEccCCCChHhH--HHHHHHHHhcCce-EEEeccccccchhhhHHH
Q 021210          140 ---LMDQWLG-NRKRILVLNREDMISMADR--NAWATYFAKQGTK-VIFSNGQLGMGTMKLSRL  196 (316)
Q Consensus       140 ---~i~~~l~-~k~~IlVlNK~DLv~~~~~--~~~~~~~~~~g~~-vi~iSa~~g~gi~~L~~~  196 (316)
                         ++.++.. +.+.++|.||+|+.+....  ++-.++..+.+.. +..+||+.+.++++....
T Consensus       103 Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~  166 (205)
T KOG0084|consen  103 WIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLT  166 (205)
T ss_pred             HHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHH
Confidence               2222222 4599999999999765431  1122333456666 888999999998775543

>cd01892 Miro2 Miro2 subfamily

Probab=97.58  E-value=0.00016  Score=61.95  Aligned_cols=56  Identities=16%  Similarity=0.106  Sum_probs=37.2

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee---EEEEEeCC---cEEEEeCCCcc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV---LKWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~---~~~~~~~~---~~~liDTPGi~  273 (316)
                      .++|+++|.+|||||||+|++.+... .+..+..|+..   ...+..+.   .+.+.||+|-.
T Consensus         4 ~~kv~~vG~~~vGKTsli~~~~~~~f-~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~   65 (169)
T cd01892           4 VFLCFVLGAKGSGKSALLRAFLGRSF-SLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDE   65 (169)
T ss_pred             EEEEEEECCCCCcHHHHHHHHhCCCC-CcccCCCccCcceEEEEEEECCeEEEEEEEecCCcc
Confidence            46899999999999999999997653 22333344322   12233322   35688999864

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=97.58  E-value=3.2e-05  Score=67.55  Aligned_cols=58  Identities=22%  Similarity=0.402  Sum_probs=39.7

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccc-----------------cCCCCCceeeEEEEE-----eCCcEEEEeCCCccc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCP-----------------AAPRPGVTRVLKWVR-----FGKDLEFLDSPGIIP  274 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~-----------------vs~~pgtT~~~~~~~-----~~~~~~liDTPGi~~  274 (316)
                      -++|+++|..++|||||+++|+......                 .....|.|.+.....     ....+.++||||...
T Consensus         3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~   82 (188)
T PF00009_consen    3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED   82 (188)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred             EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence            3579999999999999999999543211                 011246666643322     345689999999753

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=97.58  E-value=0.00036  Score=63.15  Aligned_cols=98  Identities=13%  Similarity=0.021  Sum_probs=61.1

Q ss_pred             ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHH----HHhCCCCEEEEEEccCCCChHh----------
Q 021210          101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMD----QWLGNRKRILVLNREDMISMAD----------  164 (316)
Q Consensus       101 ~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~----~~l~~k~~IlVlNK~DLv~~~~----------  164 (316)
                      -+++|. .++.+.....+..+|++|+|+|..++.+..+.  .+.    ....+.|+++|.||+||.+...          
T Consensus        54 wDt~G~-e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~  132 (222)
T cd04173          54 WDTSGS-SYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRL  132 (222)
T ss_pred             EeCCCc-HHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccC
Confidence            345666 44554444567999999999999876433221  111    1123679999999999964210          


Q ss_pred             ----HHHHHHHHHhcC-ceEEEeccccccc-hhhhHHHHHH
Q 021210          165 ----RNAWATYFAKQG-TKVIFSNGQLGMG-TMKLSRLAKA  199 (316)
Q Consensus       165 ----~~~~~~~~~~~g-~~vi~iSa~~g~g-i~~L~~~L~~  199 (316)
                          .++-.+..++.| ..++.+||+++.+ ++++...+..
T Consensus       133 ~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~  173 (222)
T cd04173         133 IPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATV  173 (222)
T ss_pred             CccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHH
Confidence                111112223445 4788999999884 9888765443

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=97.57  E-value=7.6e-05  Score=63.37  Aligned_cols=31  Identities=42%  Similarity=0.608  Sum_probs=25.8

Q ss_pred             EeEeccCCCCcchhHHhhhcCcccccCCCCC
Q 021210          220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPG  250 (316)
Q Consensus       220 i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pg  250 (316)
                      |+++|..++|||||||+|+|.....++..|.
T Consensus         1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~   31 (168)
T PF00350_consen    1 VAVVGQFSSGKSTLINALLGRPILPSGVGPC   31 (168)
T ss_dssp             EEEEEBTTSSHHHHHHHHHTSS-SSSSSSST
T ss_pred             CEEEcCCCCCHHHHHHHHHhcccCccccccc
Confidence            6899999999999999999987766666553

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=97.56  E-value=8.1e-05  Score=74.69  Aligned_cols=25  Identities=40%  Similarity=0.466  Sum_probs=22.3

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcC
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      ..++|+++|.+|+|||||+++|+..
T Consensus        26 ~~~~i~iiGhvdaGKSTL~~~LL~~   50 (474)
T PRK05124         26 SLLRFLTCGSVDDGKSTLIGRLLHD   50 (474)
T ss_pred             CceEEEEECCCCCChHHHHHHHHHh
Confidence            3589999999999999999999854

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=97.56  E-value=0.00036  Score=62.09  Aligned_cols=98  Identities=13%  Similarity=-0.042  Sum_probs=62.1

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHhCCCCEEEEEEccCCCChHhHHHHHHHHHh
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWLGNRKRILVLNREDMISMADRNAWATYFAK  174 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l~~k~~IlVlNK~DLv~~~~~~~~~~~~~~  174 (316)
                      +.+++|+ .++..........+|.+++|+|.....+..+     ..+.....+.|++++.||+|+.+.....+..++...
T Consensus        62 ~~Dt~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~  140 (215)
T PTZ00132         62 VWDTAGQ-EKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRK  140 (215)
T ss_pred             EEECCCc-hhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHH
Confidence            3445776 4444434456778999999999876543211     111122246788999999998654322222334445


Q ss_pred             cCceEEEeccccccchhhhHHHHH
Q 021210          175 QGTKVIFSNGQLGMGTMKLSRLAK  198 (316)
Q Consensus       175 ~g~~vi~iSa~~g~gi~~L~~~L~  198 (316)
                      .+..++.+|+++|.|+++....+.
T Consensus       141 ~~~~~~e~Sa~~~~~v~~~f~~ia  164 (215)
T PTZ00132        141 KNLQYYDISAKSNYNFEKPFLWLA  164 (215)
T ss_pred             cCCEEEEEeCCCCCCHHHHHHHHH
Confidence            567789999999999887665443

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.55  E-value=0.00041  Score=61.60  Aligned_cols=92  Identities=13%  Similarity=0.126  Sum_probs=66.6

Q ss_pred             cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--------CCCEEEEEEccCCCChHh--HHHHHHH
Q 021210          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--------NRKRILVLNREDMISMAD--RNAWATY  171 (316)
Q Consensus       102 ~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--------~k~~IlVlNK~DLv~~~~--~~~~~~~  171 (316)
                      |.-+-+.++..-+..+...|+-|++|.|..+..+..+  +..|+.        ..+.+||-||+|+..+.+  .+.-.++
T Consensus        66 WDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfen--i~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~l  143 (207)
T KOG0078|consen   66 WDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFEN--IRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEAL  143 (207)
T ss_pred             EEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHH--HHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHH
Confidence            4444447788888899999999999999987665544  223432        468999999999976432  1222334


Q ss_pred             HHhcCceEEEeccccccchhhhHH
Q 021210          172 FAKQGTKVIFSNGQLGMGTMKLSR  195 (316)
Q Consensus       172 ~~~~g~~vi~iSa~~g~gi~~L~~  195 (316)
                      ..+.|..++.+||+.|.|+++...
T Consensus       144 A~e~G~~F~EtSAk~~~NI~eaF~  167 (207)
T KOG0078|consen  144 AREYGIKFFETSAKTNFNIEEAFL  167 (207)
T ss_pred             HHHhCCeEEEccccCCCCHHHHHH
Confidence            456789999999999999887543

>PRK09866 hypothetical protein; Provisional

Probab=97.53  E-value=0.00015  Score=74.25  Aligned_cols=56  Identities=23%  Similarity=0.297  Sum_probs=43.0

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe----CCcEEEEeCCCccc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF----GKDLEFLDSPGIIP  274 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~----~~~~~liDTPGi~~  274 (316)
                      +.++++|.+|+|||||+|+|.|.....+++.+.||.-. ++..    .....+.||-|++.
T Consensus        70 ~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~lpT-~i~~~pg~re~~L~~dtvgfI~  129 (741)
T PRK09866         70 MVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTALPT-LIRHTPGQKEPVLHFSHVAPID  129 (741)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCccccCCCcccccccE-EEEecCCcCceeeecCCccchH
Confidence            57999999999999999999999988888887766632 3222    22355678888875

>cd04129 Rho2 Rho2 subfamily

Probab=97.53  E-value=0.00023  Score=61.87  Aligned_cols=83  Identities=17%  Similarity=0.039  Sum_probs=53.0

Q ss_pred             HHhhcCeEEEEEeCCCCCCCCcH--HHHH----HhCCCCEEEEEEccCCCChHh------------HHHHHHHHHhcC-c
Q 021210          117 QLKLMDVVIEVRDARIPLSTTHP--LMDQ----WLGNRKRILVLNREDMISMAD------------RNAWATYFAKQG-T  177 (316)
Q Consensus       117 ~i~~aDlIl~VvDar~~~~~~~~--~i~~----~l~~k~~IlVlNK~DLv~~~~------------~~~~~~~~~~~g-~  177 (316)
                      .+..+|.++++.|..+..+..+.  .+..    ...+.|+++|.||+|+.+...            .++.....++.+ .
T Consensus        69 ~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (187)
T cd04129          69 SYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAK  148 (187)
T ss_pred             hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCc
Confidence            46889999999998654322211  1111    223679999999999854210            111122223445 3


Q ss_pred             eEEEeccccccchhhhHHHHHH
Q 021210          178 KVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       178 ~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      .++.+||++|.|++++.+.+.+
T Consensus       149 ~~~e~Sa~~~~~v~~~f~~l~~  170 (187)
T cd04129         149 KYMECSALTGEGVDDVFEAATR  170 (187)
T ss_pred             EEEEccCCCCCCHHHHHHHHHH
Confidence            6889999999999998876654

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=97.53  E-value=0.00017  Score=73.43  Aligned_cols=90  Identities=17%  Similarity=0.143  Sum_probs=71.3

Q ss_pred             CCCCcchhhhhhccccCCcceE--EEeccccc-----cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHH
Q 021210           70 SNGSIEAYEEECDWADLDADLY--YWTKSLRP-----VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMD  142 (316)
Q Consensus        70 ~~~~~g~~~e~e~~~~~d~~~~--~~~~~~~~-----i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~  142 (316)
                      -.|+|.+..|.|.+-.+...-.  ..++...+     +-++||| ..+..++...+..+|.+++|+|+..++...-..+.
T Consensus       164 lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGH-VnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~i  242 (971)
T KOG0468|consen  164 LRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGH-VNFSDETTASLRLSDGVVLVVDVAEGVMLNTERII  242 (971)
T ss_pred             ccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCc-ccchHHHHHHhhhcceEEEEEEcccCceeeHHHHH
Confidence            4799999999999987766554  44444433     6789999 77999999999999999999999999876655554


Q ss_pred             HH-hC-CCCEEEEEEccCCC
Q 021210          143 QW-LG-NRKRILVLNREDMI  160 (316)
Q Consensus       143 ~~-l~-~k~~IlVlNK~DLv  160 (316)
                      +. +. ..++.+|+||+|.+
T Consensus       243 khaiq~~~~i~vviNKiDRL  262 (971)
T KOG0468|consen  243 KHAIQNRLPIVVVINKVDRL  262 (971)
T ss_pred             HHHHhccCcEEEEEehhHHH
Confidence            43 33 67999999999964

>cd01871 Rac1_like Rac1-like subfamily

Probab=97.53  E-value=0.00014  Score=62.75  Aligned_cols=54  Identities=22%  Similarity=0.268  Sum_probs=34.0

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~  273 (316)
                      ++++++|.+|||||||+.++..... .....| |+.+.  ..+..+.   .+.++||||-.
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f-~~~~~~-t~~~~~~~~~~~~~~~~~l~i~Dt~G~~   60 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIP-TVFDNYSANVMVDGKPVNLGLWDTAGQE   60 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCC-CCcCCC-cceeeeEEEEEECCEEEEEEEEECCCch
Confidence            5799999999999999999886432 111122 22111  1122222   46799999964

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=97.53  E-value=8.2e-05  Score=66.83  Aligned_cols=55  Identities=25%  Similarity=0.300  Sum_probs=39.3

Q ss_pred             EEeEeccCCCCcchhHHhhhcCccc------------------------------ccCCCCCceeeEEEEEe---CCcEE
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMC------------------------------PAAPRPGVTRVLKWVRF---GKDLE  265 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~------------------------------~vs~~pgtT~~~~~~~~---~~~~~  265 (316)
                      +|+++|.+++|||||+.+|+.....                              ......|+|++.....+   +..+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            3799999999999999999632100                              01123589998654443   55789


Q ss_pred             EEeCCCcc
Q 021210          266 FLDSPGII  273 (316)
Q Consensus       266 liDTPGi~  273 (316)
                      ++||||..
T Consensus        81 liDtpG~~   88 (219)
T cd01883          81 ILDAPGHR   88 (219)
T ss_pred             EEECCChH
Confidence            99999974

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.52  E-value=0.00018  Score=67.37  Aligned_cols=100  Identities=15%  Similarity=0.180  Sum_probs=75.8

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCC----CCCCCcHHHHHHhCCCCEEEEEEccCCCChHhHHH----HHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARI----PLSTTHPLMDQWLGNRKRILVLNREDMISMADRNA----WATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~----~~~~~~~~i~~~l~~k~~IlVlNK~DLv~~~~~~~----~~~~  171 (316)
                      .-++||| .-.+..|...++-.|.+++++.+..    |.+++|....+.+.-|+++++-||+||+.+++..+    ..++
T Consensus       129 fVDCPGH-DiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~LkhiiilQNKiDli~e~~A~eq~e~I~kF  207 (466)
T KOG0466|consen  129 FVDCPGH-DILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLIKESQALEQHEQIQKF  207 (466)
T ss_pred             eccCCch-HHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceEEEEechhhhhhHHHHHHHHHHHHHH
Confidence            5689999 5566677888888999999998763    45677777677777899999999999998765333    2233


Q ss_pred             HHh---cCceEEEeccccccchhhhHHHHHHh
Q 021210          172 FAK---QGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       172 ~~~---~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      +..   .|.+++++||.-+.|++.+.+++.+.
T Consensus       208 i~~t~ae~aPiiPisAQlkyNId~v~eyivkk  239 (466)
T KOG0466|consen  208 IQGTVAEGAPIIPISAQLKYNIDVVCEYIVKK  239 (466)
T ss_pred             HhccccCCCceeeehhhhccChHHHHHHHHhc
Confidence            322   23579999999999999998887653

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=97.51  E-value=0.00013  Score=72.20  Aligned_cols=58  Identities=22%  Similarity=0.343  Sum_probs=41.5

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccc------------------------------cCCCCCceeeEEEEEe---CC
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP------------------------------AAPRPGVTRVLKWVRF---GK  262 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~------------------------------vs~~pgtT~~~~~~~~---~~  262 (316)
                      ..++|+++|..++|||||+++|+......                              .....|+|.+.....+   +.
T Consensus         6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~   85 (426)
T TIGR00483         6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKY   85 (426)
T ss_pred             ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCe
Confidence            35789999999999999999998421110                              0123589988765444   34


Q ss_pred             cEEEEeCCCcc
Q 021210          263 DLEFLDSPGII  273 (316)
Q Consensus       263 ~~~liDTPGi~  273 (316)
                      .+.|+||||..
T Consensus        86 ~i~iiDtpGh~   96 (426)
T TIGR00483        86 EVTIVDCPGHR   96 (426)
T ss_pred             EEEEEECCCHH
Confidence            68899999953

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=97.50  E-value=0.00016  Score=69.17  Aligned_cols=59  Identities=22%  Similarity=0.326  Sum_probs=38.4

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccC---CC-CC---ceeeEEE--EEe-C----CcEEEEeCCCccc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAA---PR-PG---VTRVLKW--VRF-G----KDLEFLDSPGIIP  274 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs---~~-pg---tT~~~~~--~~~-~----~~~~liDTPGi~~  274 (316)
                      .+++|+++|.+|.||||+||+|++.......   +. +.   .|..+..  ..+ +    -++.+||||||-+
T Consensus        22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD   94 (373)
T COG5019          22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGD   94 (373)
T ss_pred             CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccc
Confidence            4688999999999999999999987322211   11 22   2222222  122 1    2478999999965

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=97.49  E-value=0.00024  Score=59.58  Aligned_cols=97  Identities=12%  Similarity=0.055  Sum_probs=64.0

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHhC-CCCEEEEEEccCCCChHh--HHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG-NRKRILVLNREDMISMAD--RNAWATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l~-~k~~IlVlNK~DLv~~~~--~~~~~~~  171 (316)
                      +-+++|+ .++.......+.++|.+|+++|..+..+..+.     .+..... ..|+++|.||+|+.+..+  .++..++
T Consensus        52 i~D~~g~-~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~  130 (162)
T PF00071_consen   52 IWDTSGQ-ERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEF  130 (162)
T ss_dssp             EEEETTS-GGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHH
T ss_pred             ccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccceeeeccccccccccchhhHHHHH
Confidence            4456776 34544445678999999999998765432221     1222223 478999999999876322  2233344


Q ss_pred             HHhcCceEEEeccccccchhhhHHHH
Q 021210          172 FAKQGTKVIFSNGQLGMGTMKLSRLA  197 (316)
Q Consensus       172 ~~~~g~~vi~iSa~~g~gi~~L~~~L  197 (316)
                      ..+.+..++.+|++++.|+.++...+
T Consensus       131 ~~~~~~~~~e~Sa~~~~~v~~~f~~~  156 (162)
T PF00071_consen  131 AKELGVPYFEVSAKNGENVKEIFQEL  156 (162)
T ss_dssp             HHHTTSEEEEEBTTTTTTHHHHHHHH
T ss_pred             HHHhCCEEEEEECCCCCCHHHHHHHH
Confidence            55566889999999999998865543

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04128 Spg1 Spg1p

Probab=97.49  E-value=0.00023  Score=61.95  Aligned_cols=55  Identities=16%  Similarity=0.261  Sum_probs=35.6

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~  273 (316)
                      +||+++|.+|||||||++++...... -...|.+..+.  ..+..+.   .+.++||+|-.
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~-~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~   60 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFD-EDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQR   60 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCccceEEEEEEEEECCEEEEEEEEeCCCch
Confidence            37899999999999999999865422 11223222222  2233332   46899999964

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=97.44  E-value=0.00029  Score=62.71  Aligned_cols=57  Identities=21%  Similarity=0.204  Sum_probs=34.4

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcc-cccCCCCCceeeEEEEEeC---CcEEEEeCCCcc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKWVRFG---KDLEFLDSPGII  273 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~-~~vs~~pgtT~~~~~~~~~---~~~~liDTPGi~  273 (316)
                      .+|++++|.+|||||||+++++.... ....+..|.......+..+   -.+.++||+|-.
T Consensus         9 ~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~   69 (215)
T PTZ00132          9 EFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQE   69 (215)
T ss_pred             CceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCch
Confidence            57899999999999999986653321 1122222332222222222   246799999963

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=97.44  E-value=0.0004  Score=61.69  Aligned_cols=62  Identities=19%  Similarity=0.262  Sum_probs=44.4

Q ss_pred             cccccchHHHHHHHHHHHHhhc-CeEEEEEeCCCCCCCCc---HHHHHHh-------CCCCEEEEEEccCCCCh
Q 021210          100 VQWYPGHIAKTEKELKDQLKLM-DVVIEVRDARIPLSTTH---PLMDQWL-------GNRKRILVLNREDMISM  162 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~a-DlIl~VvDar~~~~~~~---~~i~~~l-------~~k~~IlVlNK~DLv~~  162 (316)
                      +-++||| .++...+...+..+ +.+|+|+|+........   ..+..++       .+.|+++|.||+|+...
T Consensus        52 l~D~pG~-~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a  124 (203)
T cd04105          52 LVDVPGH-PKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA  124 (203)
T ss_pred             EEECCCC-HHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence            6678999 56777777888898 99999999987532111   1222221       26799999999998754

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=97.43  E-value=0.00022  Score=64.55  Aligned_cols=23  Identities=26%  Similarity=0.365  Sum_probs=20.5

Q ss_pred             EEeEeccCCCCcchhHHhhhcCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      +|+++|..+.|||||+++|+...
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~   24 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASA   24 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHc
Confidence            58999999999999999998643

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd04167 Snu114p Snu114p subfamily

Probab=97.43  E-value=8.8e-05  Score=66.18  Aligned_cols=23  Identities=30%  Similarity=0.528  Sum_probs=20.4

Q ss_pred             EEeEeccCCCCcchhHHhhhcCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      +|+++|.+++|||||+++|+...
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~   24 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQT   24 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhc
Confidence            48999999999999999998643

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>cd04131 Rnd Rnd subfamily

Probab=97.42  E-value=0.00034  Score=60.75  Aligned_cols=55  Identities=22%  Similarity=0.317  Sum_probs=34.9

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE-EEEEeCC---cEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~-~~~~~~~---~~~liDTPGi~  273 (316)
                      +||+++|.+|||||||++++.+... .....|.+..+. ..+.++.   .+.|+||+|-.
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~   60 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDCY-PETYVPTVFENYTASFEIDEQRIELSLWDTSGSP   60 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcC-CCCcCCceEEEEEEEEEECCEEEEEEEEECCCch
Confidence            4799999999999999999986542 222222211111 1222322   36799999963

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=97.41  E-value=0.00029  Score=59.04  Aligned_cols=54  Identities=37%  Similarity=0.545  Sum_probs=34.8

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccCCCC--CceeeEEEEEeCC---cEEEEeCCCcc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRP--GVTRVLKWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~p--gtT~~~~~~~~~~---~~~liDTPGi~  273 (316)
                      ||+++|.++||||||++++.+... .-...|  |.......+..+.   .+.|+||+|-.
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~   59 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEF-PENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQE   59 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSST-TSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSG
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcc-ccccccccccccccccccccccccccccccccccc
Confidence            589999999999999999997642 222222  2222222233322   47899999964

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=97.40  E-value=0.00013  Score=71.78  Aligned_cols=56  Identities=29%  Similarity=0.351  Sum_probs=38.4

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCccccc--------------C------------------CCCCceeeEEEEEe---CC
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPA--------------A------------------PRPGVTRVLKWVRF---GK  262 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~v--------------s------------------~~pgtT~~~~~~~~---~~  262 (316)
                      ++|+++|..++|||||+++|+.......              +                  ..-|+|++.....+   +.
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            3689999999999999999974321110              0                  12367777654433   44


Q ss_pred             cEEEEeCCCcc
Q 021210          263 DLEFLDSPGII  273 (316)
Q Consensus       263 ~~~liDTPGi~  273 (316)
                      .+.|+||||..
T Consensus        81 ~~~liDtPGh~   91 (406)
T TIGR02034        81 KFIVADTPGHE   91 (406)
T ss_pred             EEEEEeCCCHH
Confidence            68999999953

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.39  E-value=0.00019  Score=62.86  Aligned_cols=99  Identities=14%  Similarity=0.123  Sum_probs=68.6

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh----C--CCC--EEEEEEccCCCChH--hHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL----G--NRK--RILVLNREDMISMA--DRNAWA  169 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l----~--~k~--~IlVlNK~DLv~~~--~~~~~~  169 (316)
                      ..|.-+-.++|..-.....+.|+.+|+|.|..+..+..  .+..|+    .  ...  +.+|.||+||...-  +.++-.
T Consensus        57 eIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~--~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~  134 (200)
T KOG0092|consen   57 EIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFE--KAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQ  134 (200)
T ss_pred             EEEEcCCcccccccccceecCCcEEEEEEecccHHHHH--HHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHH
Confidence            45555444676666667889999999999998654332  222232    1  222  34699999998732  344455


Q ss_pred             HHHHhcCceEEEeccccccchhhhHHHHHHh
Q 021210          170 TYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       170 ~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      .|..+.|.-++.+||++|.|+++|...|.+.
T Consensus       135 ~yAe~~gll~~ETSAKTg~Nv~~if~~Ia~~  165 (200)
T KOG0092|consen  135 AYAESQGLLFFETSAKTGENVNEIFQAIAEK  165 (200)
T ss_pred             HHHHhcCCEEEEEecccccCHHHHHHHHHHh
Confidence            6677788889999999999999987665543

>cd04121 Rab40 Rab40 subfamily

Probab=97.35  E-value=0.00046  Score=60.73  Aligned_cols=56  Identities=16%  Similarity=0.188  Sum_probs=36.7

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~  273 (316)
                      .+||+++|..+||||||++++..... .....|..+.+.  ..+.++.   .+.++||||-.
T Consensus         6 ~~KivviG~~~vGKTsll~~~~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~   66 (189)
T cd04121           6 LLKFLLVGDSDVGKGEILASLQDGST-ESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQG   66 (189)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcH
Confidence            47899999999999999999986432 111112233332  2233332   46799999975

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04120 Rab12 Rab12 subfamily

Probab=97.34  E-value=0.00041  Score=61.73  Aligned_cols=54  Identities=30%  Similarity=0.384  Sum_probs=35.3

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~  273 (316)
                      .|+++|.+|||||||++++..... .....|.++.+.  ..+.++.   .+.++||+|-.
T Consensus         2 ~vvvlG~~gVGKTSli~r~~~~~f-~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe   60 (202)
T cd04120           2 QVIIIGSRGVGKTSLMRRFTDDTF-CEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQE   60 (202)
T ss_pred             EEEEECcCCCCHHHHHHHHHhCCC-CCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCch
Confidence            589999999999999999986542 211123223332  2233332   46899999964

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=97.33  E-value=0.00041  Score=61.86  Aligned_cols=56  Identities=30%  Similarity=0.338  Sum_probs=35.5

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccc-cCCCCCceeeEEEEEeC------C--cEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFG------K--DLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~-vs~~pgtT~~~~~~~~~------~--~~~liDTPGi~  273 (316)
                      +||+++|.++||||||++++.+..... ..+..|++.....+..+      .  .+.|+||+|-.
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e   65 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSE   65 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCch
Confidence            479999999999999999999764221 11111222222223321      2  36899999964

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=97.30  E-value=0.00022  Score=73.10  Aligned_cols=82  Identities=22%  Similarity=0.140  Sum_probs=57.6

Q ss_pred             hhcCeEEEEEeCCCCCCCCcHHHHH-Hh-CCCCEEEEEEccCCCChHhHHH-HHHHHHhcCceEEEeccccccchhhhHH
Q 021210          119 KLMDVVIEVRDARIPLSTTHPLMDQ-WL-GNRKRILVLNREDMISMADRNA-WATYFAKQGTKVIFSNGQLGMGTMKLSR  195 (316)
Q Consensus       119 ~~aDlIl~VvDar~~~~~~~~~i~~-~l-~~k~~IlVlNK~DLv~~~~~~~-~~~~~~~~g~~vi~iSa~~g~gi~~L~~  195 (316)
                      .+.|+|+.|+||.+-  +++..+.- ++ .++|.++++|++|...+...+- ..+.-+.+|.++++++|++|+|+++|++
T Consensus        80 ~~~D~ivnVvDAtnL--eRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~  157 (653)
T COG0370          80 GKPDLIVNVVDATNL--ERNLYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLEELKR  157 (653)
T ss_pred             CCCCEEEEEcccchH--HHHHHHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCCHHHHHH
Confidence            567999999999753  33433322 22 3889999999999876532111 1122235789999999999999999988


Q ss_pred             HHHHhhh
Q 021210          196 LAKALAS  202 (316)
Q Consensus       196 ~L~~l~~  202 (316)
                      .+.+..+
T Consensus       158 ~i~~~~~  164 (653)
T COG0370         158 AIIELAE  164 (653)
T ss_pred             HHHHhcc
Confidence            7766543

>cd04129 Rho2 Rho2 subfamily

Probab=97.30  E-value=0.00052  Score=59.69  Aligned_cols=54  Identities=24%  Similarity=0.231  Sum_probs=33.3

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE-EEEeC---CcEEEEeCCCcc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK-WVRFG---KDLEFLDSPGII  273 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~-~~~~~---~~~~liDTPGi~  273 (316)
                      |++++|.+|+|||||+|++....... ...+.+..... .+.++   ..+.++||||..
T Consensus         3 Ki~ivG~~g~GKStLl~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~   60 (187)
T cd04129           3 KLVIVGDGACGKTSLLSVFTLGEFPE-EYHPTVFENYVTDCRVDGKPVQLALWDTAGQE   60 (187)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCc-ccCCcccceEEEEEEECCEEEEEEEEECCCCh
Confidence            69999999999999999998443211 11221111111 12222   236789999974

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04103 Centaurin_gamma Centaurin gamma

Probab=97.30  E-value=0.00076  Score=57.29  Aligned_cols=82  Identities=17%  Similarity=0.037  Sum_probs=51.9

Q ss_pred             HHhhcCeEEEEEeCCCCCCCCc-HHH-HHHh-----CCCCEEEEEEccCCCC--hHhH-HHHHHHH-Hhc-CceEEEecc
Q 021210          117 QLKLMDVVIEVRDARIPLSTTH-PLM-DQWL-----GNRKRILVLNREDMIS--MADR-NAWATYF-AKQ-GTKVIFSNG  184 (316)
Q Consensus       117 ~i~~aDlIl~VvDar~~~~~~~-~~i-~~~l-----~~k~~IlVlNK~DLv~--~~~~-~~~~~~~-~~~-g~~vi~iSa  184 (316)
                      ....+|.+++|+|..+..+..+ ..+ ..+.     .+.|+++|.||+||..  ..++ .+..+.+ ++. +..++.+||
T Consensus        62 ~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA  141 (158)
T cd04103          62 FASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCA  141 (158)
T ss_pred             HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEec
Confidence            3467999999999987654433 111 1111     2458999999999842  1111 1111222 233 367899999


Q ss_pred             ccccchhhhHHHHH
Q 021210          185 QLGMGTMKLSRLAK  198 (316)
Q Consensus       185 ~~g~gi~~L~~~L~  198 (316)
                      ++|.|++++...+.
T Consensus       142 k~~~~i~~~f~~~~  155 (158)
T cd04103         142 TYGLNVERVFQEAA  155 (158)
T ss_pred             CCCCCHHHHHHHHH
Confidence            99999998876543

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=97.26  E-value=0.00055  Score=61.91  Aligned_cols=55  Identities=24%  Similarity=0.366  Sum_probs=35.1

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE-EEEEeCC---cEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~-~~~~~~~---~~~liDTPGi~  273 (316)
                      +||+++|.+|||||||++++.+... .....|.+.-+. ..+.++.   .+.|+||+|-.
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f-~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e   60 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAY-PGSYVPTVFENYTASFEIDKRRIELNMWDTSGSS   60 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCC-CCccCCccccceEEEEEECCEEEEEEEEeCCCcH
Confidence            4799999999999999999987542 222223221111 1223322   36789999963

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>TIGR01393 lepA GTP-binding protein LepA

Probab=97.25  E-value=0.00032  Score=72.28  Aligned_cols=57  Identities=28%  Similarity=0.387  Sum_probs=39.2

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccc--------cC------CCCCceeeEEEEEe-----C---CcEEEEeCCCcccC
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCP--------AA------PRPGVTRVLKWVRF-----G---KDLEFLDSPGIIPM  275 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~--------vs------~~pgtT~~~~~~~~-----~---~~~~liDTPGi~~~  275 (316)
                      +++++|.+|+|||||+++|+......        +.      ...|+|.+...+.+     +   ..+.|+||||....
T Consensus         5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF   83 (595)
T TIGR01393         5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF   83 (595)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence            68999999999999999998642111        11      12477776543322     2   24789999999753

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=97.23  E-value=0.00059  Score=71.90  Aligned_cols=89  Identities=16%  Similarity=0.038  Sum_probs=64.2

Q ss_pred             CCcchhhhhhccccCCcceEE--E--ecccc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh
Q 021210           72 GSIEAYEEECDWADLDADLYY--W--TKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL  145 (316)
Q Consensus        72 ~~~g~~~e~e~~~~~d~~~~~--~--~~~~~--~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l  145 (316)
                      +.|-...|++.++|++.....  |  .....  .+-++||| .++...+...+..+|.+|+|+|+..+.......+.+..
T Consensus        56 ~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~-~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~  134 (720)
T TIGR00490        56 YLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH-VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQA  134 (720)
T ss_pred             ecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc-cccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHH
Confidence            345556678888888876543  2  11111  26789999 45777888999999999999999988766555554443


Q ss_pred             --CCCCEEEEEEccCCCC
Q 021210          146 --GNRKRILVLNREDMIS  161 (316)
Q Consensus       146 --~~k~~IlVlNK~DLv~  161 (316)
                        .+.|.++++||+|...
T Consensus       135 ~~~~~p~ivviNKiD~~~  152 (720)
T TIGR00490       135 LKENVKPVLFINKVDRLI  152 (720)
T ss_pred             HHcCCCEEEEEEChhccc
Confidence              2568899999999863

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=97.21  E-value=0.00039  Score=63.91  Aligned_cols=57  Identities=35%  Similarity=0.509  Sum_probs=44.0

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE-EE-E-EeCCcEEEEeCCCcccC
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KW-V-RFGKDLEFLDSPGIIPM  275 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~-~~-~-~~~~~~~liDTPGi~~~  275 (316)
                      .+++++|+|.|||||+++.|.+.. ..+..+-|||--. +. + ..+.+++|.|-|||+..
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~-s~vasyefttl~~vpG~~~y~gaKiqlldlpgiieg  119 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTF-SEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEG  119 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCC-CccccccceeEEEecceEeccccceeeecCcchhcc
Confidence            489999999999999999999764 5666666776543 21 2 23678999999999864

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=97.20  E-value=0.00084  Score=58.62  Aligned_cols=56  Identities=21%  Similarity=0.324  Sum_probs=35.4

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE-EEEEeCC---cEEEEeCCCcc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~-~~~~~~~---~~~liDTPGi~  273 (316)
                      .+||+++|.++||||||++++..... .....|.+.-+. ..+.++.   .+.|+||+|-.
T Consensus         5 ~~KivvvGd~~vGKTsli~~~~~~~f-~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e   64 (182)
T cd04172           5 KCKIVVVGDSQCGKTALLHVFAKDCF-PENYVPTVFENYTASFEIDTQRIELSLWDTSGSP   64 (182)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCCC-CCccCCceeeeeEEEEEECCEEEEEEEEECCCch
Confidence            46899999999999999999986542 111112111111 1223332   37899999963

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>PRK10218 GTP-binding protein; Provisional

Probab=97.19  E-value=0.00052  Score=70.81  Aligned_cols=58  Identities=21%  Similarity=0.353  Sum_probs=40.3

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCccccc---------------CCCCCceeeEEEEEe---CCcEEEEeCCCcccC
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPA---------------APRPGVTRVLKWVRF---GKDLEFLDSPGIIPM  275 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~v---------------s~~pgtT~~~~~~~~---~~~~~liDTPGi~~~  275 (316)
                      -+|+++|..++|||||+++|+.......               ....|+|.......+   +..+.++||||....
T Consensus         6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df   81 (607)
T PRK10218          6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADF   81 (607)
T ss_pred             eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchh
Confidence            3699999999999999999996321111               123567766543333   446899999998653

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=97.17  E-value=0.0049  Score=52.15  Aligned_cols=115  Identities=10%  Similarity=0.012  Sum_probs=74.5

Q ss_pred             ccccCCcceEEEeccccc--cccccchHHHHHHHHH-HHHhhcCeEEEEEeCCCCC--CCCcHHHHHHhC-----CCCEE
Q 021210           82 DWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELK-DQLKLMDVVIEVRDARIPL--STTHPLMDQWLG-----NRKRI  151 (316)
Q Consensus        82 ~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~-~~i~~aDlIl~VvDar~~~--~~~~~~i~~~l~-----~k~~I  151 (316)
                      -.++..++.+-.+..-..  +=+.||. . ..+.++ .....+++|+++|||.++.  +....++..++.     +.|++
T Consensus        49 miptvGfnmrk~tkgnvtiklwD~gGq-~-rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~L  126 (186)
T KOG0075|consen   49 MIPTVGFNMRKVTKGNVTIKLWDLGGQ-P-RFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLL  126 (186)
T ss_pred             hcccccceeEEeccCceEEEEEecCCC-c-cHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEE
Confidence            345666666655544333  2234555 3 345555 4568899999999998864  223345555553     67999


Q ss_pred             EEEEccCCCChHhHHHHHHHHHhcC--------ceEEEeccccccchhhhHHHHHHhh
Q 021210          152 LVLNREDMISMADRNAWATYFAKQG--------TKVIFSNGQLGMGTMKLSRLAKALA  201 (316)
Q Consensus       152 lVlNK~DLv~~~~~~~~~~~~~~~g--------~~vi~iSa~~g~gi~~L~~~L~~l~  201 (316)
                      ++.||.|+-+.-...+.   ..+.|        +-++.+|++...+++.+.+.+.+..
T Consensus       127 VLGnK~d~~~AL~~~~l---i~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~hs  181 (186)
T KOG0075|consen  127 VLGNKIDLPGALSKIAL---IERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEHS  181 (186)
T ss_pred             EecccccCcccccHHHH---HHHhCccccccceEEEEEEEEcCCccHHHHHHHHHHHh
Confidence            99999998654322222   22333        3467899999999999888876543

>cd04133 Rop_like Rop subfamily

Probab=97.17  E-value=0.00073  Score=58.71  Aligned_cols=54  Identities=20%  Similarity=0.285  Sum_probs=34.8

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee-E-EEEEeCC---cEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV-L-KWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~-~-~~~~~~~---~~~liDTPGi~  273 (316)
                      +|++++|.++||||||++++..... .-...| |..+ . ..+..+.   ++.++||+|-.
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f-~~~~~~-Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~   60 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKF-PTDYIP-TVFDNFSANVSVDGNTVNLGLWDTAGQE   60 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCC-CCCCCC-cceeeeEEEEEECCEEEEEEEEECCCCc
Confidence            4799999999999999999996542 222222 2111 1 1122222   46899999964

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd01875 RhoG RhoG subfamily

Probab=97.15  E-value=0.0007  Score=59.25  Aligned_cols=56  Identities=21%  Similarity=0.283  Sum_probs=34.6

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE-EEEeCC---cEEEEeCCCcc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK-WVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~-~~~~~~---~~~liDTPGi~  273 (316)
                      .++|+++|.+|||||||++++..... .-...|....... .+.++.   .+.++||+|-.
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e   62 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAF-PKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQE   62 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCC-CcCCCCceEeeeEEEEEECCEEEEEEEEECCCch
Confidence            36899999999999999999986542 1111121111111 122332   37899999963

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.13  E-value=0.0013  Score=55.49  Aligned_cols=113  Identities=15%  Similarity=0.117  Sum_probs=73.7

Q ss_pred             ccCCcceEEEecccc-ccc-cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--------CCCCEEEE
Q 021210           84 ADLDADLYYWTKSLR-PVQ-WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILV  153 (316)
Q Consensus        84 ~~~d~~~~~~~~~~~-~i~-~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--------~~k~~IlV  153 (316)
                      +.+.+..+ |....| ++| |.-..++++..-+-.++..|+.+|++.|..+..+..  .+..|.        .+.++|+|
T Consensus        56 idFKvKTv-yr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~--svqdw~tqIktysw~naqvilv  132 (193)
T KOG0093|consen   56 IDFKVKTV-YRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFN--SVQDWITQIKTYSWDNAQVILV  132 (193)
T ss_pred             eeEEEeEe-eecccEEEEEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHH--HHHHHHHHheeeeccCceEEEE
Confidence            33444433 333333 344 334445777777778899999999999987643221  233332        16799999


Q ss_pred             EEccCCCChHh--HHHHHHHHHhcCceEEEeccccccchhhhHHHHHH
Q 021210          154 LNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       154 lNK~DLv~~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      .||||+-++..  .+.-.....++|.+++..|++.+.|++++.+.+..
T Consensus       133 gnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv~  180 (193)
T KOG0093|consen  133 GNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERLVD  180 (193)
T ss_pred             ecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHHHH
Confidence            99999976532  22334455678889999999999999887665443

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=97.13  E-value=0.00038  Score=60.23  Aligned_cols=56  Identities=25%  Similarity=0.485  Sum_probs=38.1

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCcc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII  273 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~  273 (316)
                      ...+|+++|..|+||||+++.|.......+.+.-|..  ...+.. +..+.++|.+|=.
T Consensus        13 ~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~--~~~i~~~~~~~~~~d~gG~~   69 (175)
T PF00025_consen   13 KEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFN--IEEIKYKGYSLTIWDLGGQE   69 (175)
T ss_dssp             SEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEE--EEEEEETTEEEEEEEESSSG
T ss_pred             cEEEEEEECCCccchHHHHHHhhhccccccCcccccc--cceeeeCcEEEEEEeccccc
Confidence            3578999999999999999999876544433322322  222333 3367899998853

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.12  E-value=0.0021  Score=57.46  Aligned_cols=113  Identities=16%  Similarity=0.153  Sum_probs=64.6

Q ss_pred             CCCCCeeEEecCCCCCcCCCCCCCCCCCcchhhhhhccccCCcceEEEeccccccccccchHHHHHHHHHHHHh---hcC
Q 021210           46 SSSAPIIQTVGGKQSSWHGGNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLK---LMD  122 (316)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~i~~~Pgh~~~~~r~l~~~i~---~aD  122 (316)
                      +|.++++-++|..   ..+-+.-+-.+.+|....----++...+.++.-.....+-++||| .+..+++.+...   ++-
T Consensus        35 rs~~~~Vll~Gl~---dSGKT~LF~qL~~gs~~~TvtSiepn~a~~r~gs~~~~LVD~PGH-~rlR~kl~e~~~~~~~ak  110 (238)
T KOG0090|consen   35 RSKQNAVLLVGLS---DSGKTSLFTQLITGSHRGTVTSIEPNEATYRLGSENVTLVDLPGH-SRLRRKLLEYLKHNYSAK  110 (238)
T ss_pred             hccCCcEEEEecC---CCCceeeeeehhcCCccCeeeeeccceeeEeecCcceEEEeCCCc-HHHHHHHHHHccccccce
Confidence            3444677777652   222233333444442111111122222222222233468899999 888889999888   899


Q ss_pred             eEEEEEeCCCCCCCCc---HHHHHHhC-------CCCEEEEEEccCCCCh
Q 021210          123 VVIEVRDARIPLSTTH---PLMDQWLG-------NRKRILVLNREDMISM  162 (316)
Q Consensus       123 lIl~VvDar~~~~~~~---~~i~~~l~-------~k~~IlVlNK~DLv~~  162 (316)
                      .|++|||+........   ..++..+.       ..|++++.||-|+...
T Consensus       111 aiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tA  160 (238)
T KOG0090|consen  111 AIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA  160 (238)
T ss_pred             eEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhc
Confidence            9999999875432221   22233222       3589999999999743

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=97.12  E-value=0.0005  Score=60.91  Aligned_cols=23  Identities=30%  Similarity=0.459  Sum_probs=20.5

Q ss_pred             eEEeEeccCCCCcchhHHhhhcC
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      ++|+++|..++|||||+.+|.+.
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~   23 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGV   23 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            36899999999999999999754

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>smart00053 DYNc Dynamin, GTPase

Probab=97.10  E-value=0.0013  Score=60.37  Aligned_cols=70  Identities=29%  Similarity=0.426  Sum_probs=0.0

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccCCCCCcee---------------------------------------------
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR---------------------------------------------  253 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~---------------------------------------------  253 (316)
                      +++++|..++||||++|+|.+......+....|.+                                             
T Consensus        28 ~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~~~~  107 (240)
T smart00053       28 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVTGTN  107 (240)
T ss_pred             eEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhcCCC


Q ss_pred             -----eEEEEEe----CCcEEEEeCCCcccCCCCCHHHHHHHHh
Q 021210          254 -----VLKWVRF----GKDLEFLDSPGIIPMRISDQAAAIKLAI  288 (316)
Q Consensus       254 -----~~~~~~~----~~~~~liDTPGi~~~~~~~~~~~~~La~  288 (316)
                           +...+++    ..++.|+||||+......++...+.-.+
T Consensus       108 ~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i  151 (240)
T smart00053      108 KGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQI  151 (240)
T ss_pred             CcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHH

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=97.09  E-value=0.00046  Score=67.86  Aligned_cols=24  Identities=33%  Similarity=0.476  Sum_probs=21.7

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcC
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      .++|+++|.+|+|||||+++|.+.
T Consensus         4 ~~~i~iiG~~~~GKSTL~~~Lt~~   27 (406)
T TIGR03680         4 EVNIGMVGHVDHGKTTLTKALTGV   27 (406)
T ss_pred             eEEEEEEccCCCCHHHHHHHHhCe
Confidence            478999999999999999999753

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=97.08  E-value=0.00069  Score=69.80  Aligned_cols=56  Identities=25%  Similarity=0.396  Sum_probs=38.5

Q ss_pred             EEeEeccCCCCcchhHHhhhcCccc-----cc----------CCCCCceeeEEE---EEeCCcEEEEeCCCccc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMC-----PA----------APRPGVTRVLKW---VRFGKDLEFLDSPGIIP  274 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~-----~v----------s~~pgtT~~~~~---~~~~~~~~liDTPGi~~  274 (316)
                      +|+++|..++|||||+++|+.....     .+          ...-|+|.....   .+.+..+.|+||||..+
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~D   76 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHAD   76 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHH
Confidence            5899999999999999999853211     11          112467766432   22355789999999854

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>cd04103 Centaurin_gamma Centaurin gamma

Probab=97.08  E-value=0.0012  Score=56.13  Aligned_cols=53  Identities=28%  Similarity=0.263  Sum_probs=33.4

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee--EEEEEeCC---cEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~--~~~~~~~~---~~~liDTPGi~  273 (316)
                      ++|+++|.+|||||||++++........  .+ +|..  ...+.++.   .+.+.||+|-.
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~--~~-~~~~~~~~~i~~~~~~~~l~i~D~~g~~   58 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQL--ES-PEGGRFKKEVLVDGQSHLLLIRDEGGAP   58 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCC--CC-CCccceEEEEEECCEEEEEEEEECCCCC
Confidence            3689999999999999999875432111  11 1111  11233322   36789999984

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	316
1puj_A	282	Structure Of B. Subtilis Ylqf Gtpase Length = 282		4e-43
3cnl_A	262	Crystal Structure Of Gnp-Bound Ylqf From T. Maritim		2e-25
2dyk_A	161	Crystal Structure Of N-Terminal Gtp-Binding Domain		4e-06
4dcs_A	456	Crystal Structure Of B. Subtilis Enga In Complex Wi		9e-06
3r9w_A	307	Crystal Structure Of Era In Complex With Mggdpnp An		1e-05
3iev_A	308	Crystal Structure Of Era In Complex With Mggnp And		1e-05
1wf3_A	301	Crystal Structure Of Gtp-Binding Protein Tt1341 Fro		2e-05
3h2y_A	368	Crystal Structure Of Yqeh Gtpase From Bacillus Anth		3e-05
1xzp_A	482	Structure Of The Gtp-Binding Protein Trme From Ther		5e-05
1sul_A	195	Crystal Structure Of The Apo-Ysxc Length = 195		7e-05
1mky_A	439	Structural Analysis Of The Domain Interactions In D		2e-04
3pqc_A	195	Crystal Structure Of Thermotoga Maritima Ribosome B		3e-04
2hjg_A	436	The Crystal Structure Of The B. Subtilis Yphc Gtpas		4e-04

>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase Length = 282

Iteration: 1
 Score =  171 bits (434), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 82/211 (38%), Positives = 134/211 (63%)
Query: 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
           +QW+PGH+AK  +E+ ++LKL+D+V E+ DARIP+S+ +P+++  L N+ RI++LN+ D 
Sbjct: 3   IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADK 62
Query: 160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVR 219
              A    W  +F  QG + +  N   G G  ++   +K +  +   + R+KG+ PRA+R
Sbjct: 63  ADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIR 122
Query: 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISD 279
           A I+G PNVGKS+LINRL K+ +     RPG+T   +WV+ GK+LE LD+PGI+  +  D
Sbjct: 123 ALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFED 182
Query: 280 QAAAIKLAICDDIGERSYDVADVAAILVQML 310
           +   ++LA+   I +   ++ DVA   ++ L
Sbjct: 183 ELVGLRLAVTGAIKDSIINLQDVAVFGLRFL 213

>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima Length = 262

Iteration: 1
 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 103/193 (53%), Gaps = 19/193 (9%)
Query: 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
           + WYPGHI K ++++KD L+L++ V+EVRDAR P +T+   +D     ++ I++LN+ D+
Sbjct: 1   MSWYPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD--FSRKETIILLNKVDI 58
Query: 160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVR 219
                   W  +F KQG +VI ++              K     V +K+ S     R  R
Sbjct: 59  ADEKTTKKWVEFFKKQGKRVITTH--------------KGEPRKVLLKKLS---FDRLAR 101
Query: 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISD 279
             IVG PN GKS++IN+L  +R      +PG+T+ ++W      ++ LD+PGI+   I  
Sbjct: 102 VLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLENGVKILDTPGILYKNIFS 161
Query: 280 QAAAIKLAICDDI 292
           +  A KL +   +
Sbjct: 162 EDLAAKLLLVGSL 174

>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga From Thermus Thermophilus Hb8 Length = 161

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/35 (71%), Positives = 26/35 (74%)
Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK 256
           IVG PNVGKSSL NRLLK+R    A  PGVTR LK
Sbjct: 6   IVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLK 40

>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Sulfate Ion And Gdp Length = 456

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 50/107 (46%), Gaps = 18/107 (16%)
Query: 212 GLLPRAVRAG-----IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR-----VLKWVRFG 261
           GL+PR    G     IVG PNVGKS++ NR+   R+      PGVTR       +W+ + 
Sbjct: 13  GLVPRGSHMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNY- 71
Query: 262 KDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQ 308
            D   +D+ GI    I D+     LA      E + D ADV   +V 
Sbjct: 72  -DFNLIDTGGI---DIGDEPF---LAQIRQQAEIAMDEADVIIFMVN 111

>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And Nucleotides 1506- 1542 Of 16s Ribosomal Rna Length = 307

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 8/92 (8%)
Query: 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV----LKWVRFGKDLEFLDSPGIIPM 275
             IVG PNVGKS+L+N LL  ++   +P+ G TR+    +K +     + FLD+PGI   
Sbjct: 12  VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEP 71
Query: 276 RISDQAAAIKLAICDDIGERSYDVADVAAILV 307
           + SD      +    +I ++S + ADV   ++
Sbjct: 72  KKSDVLGHSMV----EIAKQSLEEADVILFMI 99

>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3' End Of 16s Rrna Length = 308

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 8/92 (8%)
Query: 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV----LKWVRFGKDLEFLDSPGIIPM 275
             IVG PNVGKS+L+N LL  ++   +P+ G TR+    +K +     + FLD+PGI   
Sbjct: 13  VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEP 72
Query: 276 RISDQAAAIKLAICDDIGERSYDVADVAAILV 307
           + SD      +    +I ++S + ADV   ++
Sbjct: 73  KKSDVLGHSMV----EIAKQSLEEADVILFMI 100

>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From Thermus Thermophilus Hb8 Length = 301

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 7/57 (12%)
Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR-----VLKWVRFGKDLEFLDSPGI 272
            IVG PNVGKS+L+N LL  ++ P +PRP  TR     +L   R  + + F+D+PG+
Sbjct: 11  AIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGL 65

>pdb|3H2Y|A Chain A, Crystal Structure Of Yqeh Gtpase From Bacillus Anthracis With Dgdp Bound Length = 368

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 28/149 (18%)
Query: 139 PLMDQWLGNRKRILVLNREDMISMADRN----AWATYFAKQ-GTK---VIFSNGQLGMGT 190
           P + +++GN K +LV N+ D+I  + ++     W  Y AKQ G K   V   +   G G 
Sbjct: 88  PGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWXRYSAKQLGLKPEDVFLISAAKGQGI 147
Query: 191 MKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLK------RRMCP 244
            +L       A  +   R  K +        +VG  NVGKS+ INR +K        +  
Sbjct: 148 AEL-------ADAIEYYRGGKDVY-------VVGCTNVGKSTFINRXIKEFSDETENVIT 193
Query: 245 AAPRPGVTRVLKWVRFGKDLEFLDSPGII 273
            +  PG T  L  +   ++    D+PGII
Sbjct: 194 TSHFPGTTLDLIDIPLDEESSLYDTPGII 222

>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga Maritima Length = 482

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 192 KLSRLAKALASDVNVKRRSKG-LLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG 250
           +L R+ + L  ++  K+   G LL R +R  IVG PNVGKS+L+NRLL          PG
Sbjct: 219 RLERIKEKLTEEL--KKADAGILLNRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPG 276
Query: 251 VTR 253
            TR
Sbjct: 277 TTR 279

>pdb|1SUL|A Chain A, Crystal Structure Of The Apo-Ysxc Length = 195

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 191 MKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRP 249
           MK+++ ++ + S V  ++  +G LP      + G  NVGKSS IN L+ R+ +   + +P
Sbjct: 1   MKVTK-SEIVISAVKPEQYPEGGLPEI---ALAGRSNVGKSSFINSLINRKNLARTSSKP 56
Query: 250 GVTRVLKWVRFGKDLEFLDSPG 271
           G T+ L +     +L F+D PG
Sbjct: 57  GKTQTLNFYIINDELHFVDVPG 78

>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A Switch Protein Containing Two Gtpase Domains Length = 439

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 27/44 (61%)
Query: 210 SKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253
           SK  +  A++  IVG PNVGKS+L N +L +     +P PG TR
Sbjct: 173 SKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTR 216

>pdb|3PQC|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN COMPLEX WITH GDP Length = 195

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 36/77 (46%)
Query: 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIP 274
           P       VG  NVGKSSL+N L  R++   +  PG TR + +        F+D PG   
Sbjct: 21  PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGY 80
Query: 275 MRISDQAAAIKLAICDD 291
            ++S +   +   + +D
Sbjct: 81  AKVSKKERMLWKRLVED 97

>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In Complex With Gdp Length = 436

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR-----VLKWVRFGKDLEFLDSPGI 272
           IVG PNVGKS++ NR+   R+      PGVTR       +W+ +  D   +D+ GI
Sbjct: 8   IVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNY--DFNLIDTGGI 61

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	316
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	1e-93
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	2e-83
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	8e-36
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	8e-34
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	2e-10
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	4e-10
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	2e-09
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	7e-09
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	1e-08
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	1e-07
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	2e-08
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	3e-07
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	5e-07
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	8e-06
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	9e-06
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	2e-05
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	2e-05
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	2e-05
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	3e-05
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	4e-05
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	7e-05
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	7e-05
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	8e-05
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	1e-04
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	4e-04
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	6e-04
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	7e-04

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 Length = 282

 Score =  278 bits (713), Expect = 1e-93
 Identities = 82/213 (38%), Positives = 134/213 (62%)

Query: 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
           +QW+PGH+AK  +E+ ++LKL+D+V E+ DARIP+S+ +P+++  L N+ RI++LN+ D 
Sbjct: 3   IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADK 62

Query: 160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVR 219
              A    W  +F  QG + +  N   G G  ++   +K +  +   + R+KG+ PRA+R
Sbjct: 63  ADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIR 122

Query: 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISD 279
           A I+G PNVGKS+LINRL K+ +     RPG+T   +WV+ GK+LE LD+PGI+  +  D
Sbjct: 123 ALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFED 182

Query: 280 QAAAIKLAICDDIGERSYDVADVAAILVQMLAR 312
           +   ++LA+   I +   ++ DVA   ++ L  
Sbjct: 183 ELVGLRLAVTGAIKDSIINLQDVAVFGLRFLEE 215

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* Length = 262

 Score =  251 bits (643), Expect = 2e-83
 Identities = 62/213 (29%), Positives = 105/213 (49%), Gaps = 19/213 (8%)

Query: 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
           + WYPGHI K ++++KD L+L++ V+EVRDAR P +T+   +D     ++ I++LN+ D+
Sbjct: 1   MSWYPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD--FSRKETIILLNKVDI 58

Query: 160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVR 219
                   W  +F KQG +VI ++       +                   K    R  R
Sbjct: 59  ADEKTTKKWVEFFKKQGKRVITTHKGEPRKVL-----------------LKKLSFDRLAR 101

Query: 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISD 279
             IVG PN GKS++IN+L  +R      +PG+T+ ++W      ++ LD+PGI+   I  
Sbjct: 102 VLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLENGVKILDTPGILYKNIFS 161

Query: 280 QAAAIKLAICDDIGERSYDVADVAAILVQMLAR 312
           +  A KL +   +     +   +     ++ AR
Sbjct: 162 EDLAAKLLLVGSLPVERIEDQRIFERAFEIFAR 194

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} Length = 368

 Score =  131 bits (331), Expect = 8e-36
 Identities = 43/224 (19%), Positives = 83/224 (37%), Gaps = 32/224 (14%)

Query: 111 EKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWAT 170
            + L    K   +V+++ D      +  P + +++GN K +LV N+ D+I  + ++    
Sbjct: 60  LRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVK 119

Query: 171 YFAKQGTK--------VIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGI 222
           ++ +   K        V   +   G G  +L+   +                       +
Sbjct: 120 HWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYR--------------GGKDVYV 165

Query: 223 VGYPNVGKSSLINRLLKR------RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMR 276
           VG  NVGKS+ INR++K        +   +  PG T  L  +   ++    D+PGII   
Sbjct: 166 VGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGIINHH 225

Query: 277 ISDQAAAIK----LAICDDIGERSYDVADVAAILVQMLARIPTV 316
                   +    +    +I    + + +   +    LAR   V
Sbjct: 226 QMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYV 269

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} Length = 369

 Score =  126 bits (317), Expect = 8e-34
 Identities = 39/237 (16%), Positives = 77/237 (32%), Gaps = 34/237 (14%)

Query: 97  LRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNR 156
           ++ V             L    +   +V+ + D      +  P + ++  +   +LV N+
Sbjct: 51  VQDVPLDDDDF---LSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFAADNPILLVGNK 107

Query: 157 EDM----ISMADRNAWATYFAKQG----TKVIFSNGQLGMGTMKLSRLAKALASDVNVKR 208
            D+    +       W    A++       V   +   G+G  K+               
Sbjct: 108 ADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR------- 160

Query: 209 RSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR-----RMCPAAPRPGVTRVLKWVRFGKD 263
                        +VG  NVGKS+ INR+++       +   +  PG T  +  +     
Sbjct: 161 -------EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESG 213

Query: 264 LEFLDSPGIIPMRISDQAAAIK----LAICDDIGERSYDVADVAAILVQMLARIPTV 316
               D+PGII           +    +    +I  R Y + +   +    LAR+  +
Sbjct: 214 ATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYI 270

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 Length = 190

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 6/53 (11%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAA--PRPGVTRVLKWVRFGKDLEFLDSPGI 272
             G  NVGKS+LI RL  ++        RPGVTR +  +   K+ + +D PG 
Sbjct: 6   FAGRSNVGKSTLIYRLTGKK---VRRGKRPGVTRKIIEIE-WKNHKIIDMPGF 54

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} Length = 161

 Score = 56.7 bits (138), Expect = 4e-10
 Identities = 30/79 (37%), Positives = 38/79 (48%), Gaps = 17/79 (21%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR-----VLKWVRFGKDLEF-------LDS 269
           IVG PNVGKSSL NRLLK+R    A  PGVTR     V++         F       L S
Sbjct: 6   IVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVET----DRGRFLLVDTGGLWS 61

Query: 270 PGIIPMRISDQA-AAIKLA 287
                 +I ++   A++ A
Sbjct: 62  GDKWEKKIQEKVDRALEDA 80

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262

 Score = 56.4 bits (136), Expect = 2e-09
 Identities = 15/84 (17%), Positives = 32/84 (38%), Gaps = 4/84 (4%)

Query: 193 LSRLAKALASDV-NVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGV 251
             +   A    +     + K     ++   ++G   VGKSS +N L+  ++   +P    
Sbjct: 11  FQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAE 70

Query: 252 TRV---LKWVRFGKDLEFLDSPGI 272
                 +     G  +  +D+PG+
Sbjct: 71  GLRPVMVSRTMGGFTINIIDTPGL 94

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423

 Score = 55.4 bits (134), Expect = 7e-09
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 6/64 (9%)

Query: 215 PRAVRA--GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR--VLKWVRFGKD--LEFLD 268
               R    + G  NVGKSS +N L+ + +   +   G T   V K +       +  +D
Sbjct: 30  DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVD 89

Query: 269 SPGI 272
           +PG+
Sbjct: 90  TPGL 93

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 Length = 439

 Score = 54.8 bits (133), Expect = 1e-08
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 19/81 (23%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR-----VLKWVRFGKDLEFL--------- 267
           IVG PNVGKS+L N+L+K++        GVTR      ++W        F          
Sbjct: 6   IVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEW----YGKTFKLVDTCGVFD 61

Query: 268 DSPGIIPMRISDQA-AAIKLA 287
           +   II  ++ +     I+ A
Sbjct: 62  NPQDIISQKMKEVTLNMIREA 82

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 Length = 439

 Score = 51.7 bits (125), Expect = 1e-07
 Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 33/170 (19%)

Query: 122 DVVIEVRDARIPLSTTHPLMDQWLGNRKR----ILVLNREDMISMADRNAWATYF----- 172
           D+V+ V D +  ++     +  +L  RK     ILV N+ + +   +R      +     
Sbjct: 83  DLVLFVVDGKRGITKEDESLADFL--RKSTVDTILVANKAENLREFEREVKPELYSLGFG 140

Query: 173 ------AKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYP 226
                 A+           + + TM L  + K L  +  +   SK  +  A++  IVG P
Sbjct: 141 EPIPVSAEHN---------INLDTM-LETIIKKLE-EKGLDLESKPEITDAIKVAIVGRP 189

Query: 227 NVGKSSLINRLL-KRRMCPAAPRPGVTR---VLKWVRFGKDLEFLDSPGI 272
           NVGKS+L N +L K R    +P PG TR     +    G+   F+D+ G+
Sbjct: 190 NVGKSTLFNAILNKERAL-VSPIPGTTRDPVDDEVFIDGRKYVFVDTAGL 238

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} Length = 436

 Score = 54.4 bits (132), Expect = 2e-08
 Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 14/78 (17%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR-----VLKWVRFGKDLEFLDSPGI---- 272
           IVG PNVGKS++ NR+   R+      PGVTR       +W     D   +D+ GI    
Sbjct: 8   IVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEW--LNYDFNLIDTGGIDIGD 65

Query: 273 --IPMRISDQA-AAIKLA 287
                +I  QA  A+  A
Sbjct: 66  EPFLAQIRQQAEIAMDEA 83

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} Length = 436

 Score = 50.6 bits (122), Expect = 3e-07
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR---VLKWVRFGKDLEFLDSPG 271
              ++  ++G PNVGKSSL+N +L       +   G TR      +    ++   +D+ G
Sbjct: 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAG 232

Query: 272 I 272
           +
Sbjct: 233 M 233

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270

 Score = 49.2 bits (117), Expect = 5e-07
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGI 272
           ++G   VGKSS +N ++  R+   +P          V     G  L  +D+PG+
Sbjct: 44  VMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGL 97

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 Length = 301

 Score = 45.5 bits (109), Expect = 8e-06
 Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 6/61 (9%)

Query: 219 RAG---IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR-VLKWVRFGKD--LEFLDSPGI 272
            +G   IVG PNVGKS+L+N LL  ++ P +PRP  TR  L+ +       + F+D+PG+
Sbjct: 6   YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGL 65

Query: 273 I 273
            
Sbjct: 66  H 66

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* Length = 308

 Score = 45.5 bits (109), Expect = 9e-06
 Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 7/62 (11%)

Query: 219 RAG---IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR--VLKWVRFGKD--LEFLDSPG 271
           + G   IVG PNVGKS+L+N LL  ++   +P+ G TR  VL       +  + FLD+PG
Sbjct: 9   KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPG 68

Query: 272 II 273
           I 
Sbjct: 69  IY 70

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172

 Score = 43.7 bits (104), Expect = 2e-05
 Identities = 25/64 (39%), Positives = 30/64 (46%), Gaps = 16/64 (25%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAA---PRPGVTR-VLKWVRFGKDLEFLDSPGIIPMRI 277
           I G PN GKSSL+N L  R    AA      G TR VL+        E +   G +P+ I
Sbjct: 9   IAGRPNAGKSSLLNALAGRE---AAIVTDIAGTTRDVLR--------EHIHIDG-MPLHI 56

Query: 278 SDQA 281
            D A
Sbjct: 57  IDTA 60

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} Length = 228

 Score = 44.0 bits (104), Expect = 2e-05
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 4/69 (5%)

Query: 208 RRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW-VRFGKDLEF 266
           +    + P      + G PNVGKSS +N + +  +         T+ L       K  ++
Sbjct: 20  QGLPSINPHKKTIILSGAPNVGKSSFMNIVSRANV-DVQSYSFTTKNLYVGHFDHKLNKY 78

Query: 267 --LDSPGII 273
             +D+PG++
Sbjct: 79  QIIDTPGLL 87

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* Length = 695

 Score = 45.0 bits (105), Expect = 2e-05
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 206 VKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKD 263
           +   SK L     R  ++G    GKS+ +N L+   + P+   P  T VL  +R+G +
Sbjct: 58  ITIASKNLQQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNP-CTAVLTVLRYGPE 114

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 44.3 bits (104), Expect = 3e-05
 Identities = 20/93 (21%), Positives = 28/93 (30%), Gaps = 8/93 (8%)

Query: 206 VKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCP--AAP--RPGVTRVLKWVRFG 261
           +    K +    +   + G    GKSS IN L         AA      VT      +  
Sbjct: 58  ISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP 117

Query: 262 K--DLEFLDSPGIIPMRISDQA--AAIKLAICD 290
              ++ F D PGI             +K    D
Sbjct: 118 NIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYD 150

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A Length = 364

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 8/51 (15%)

Query: 192 KLSRLAKALAS-----DVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRL 237
           ++++L K L S     + +++   +  +P     GIVGY N GK+SL N L
Sbjct: 152 RINKLMKELESIKIFKEKSIESNKRNNIPSI---GIVGYTNSGKTSLFNSL 199

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X Length = 301

 Score = 43.2 bits (103), Expect = 5e-05
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 3/38 (7%)

Query: 219 RAG---IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253
             G   IVG PNVGKS+L+N+LL +++   + +   TR
Sbjct: 7   YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTR 44

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 7e-05
 Identities = 39/289 (13%), Positives = 76/289 (26%), Gaps = 118/289 (40%)

Query: 87  DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARI-------------- 132
           + D        + +         +++E+   +   D V      R+              
Sbjct: 32  NFDCKDVQDMPKSIL--------SKEEIDHIIMSKDAVSGTL--RLFWTLLSKQEEMVQK 81

Query: 133 ----PLSTTHP-LMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLG 187
                L   +  LM       +R   +     I   DR              ++++ Q+ 
Sbjct: 82  FVEEVLRINYKFLMSPI-KTEQRQPSMMTRMYIEQRDR--------------LYNDNQV- 125

Query: 188 MGTMKLSR------LAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLL--- 238
                +SR      L +AL       R +K +L       I G    GK+ +   +    
Sbjct: 126 FAKYNVSRLQPYLKLRQALLEL----RPAKNVL-------IDGVLGSGKTWVALDVCLSY 174

Query: 239 --KRRMCPAAPRPGVTRVLKWVRFGKD------LEFL---------------DSPGIIPM 275
             + +M          ++  W+           LE L               D    I +
Sbjct: 175 KVQCKM------DF--KIF-WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225

Query: 276 RISDQAAAIK-----------LAICDDIGERSYDVADVAA------ILV 307
           RI    A ++           L +  ++     +     A      IL+
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNV----QNAKAWNAFNLSCKILL 270

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} Length = 462

 Score = 43.3 bits (103), Expect = 7e-05
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 4/29 (13%)

Query: 216 RAVRAG----IVGYPNVGKSSLINRLLKR 240
             +R G    IVG PNVGKSSL+N   + 
Sbjct: 219 ELLRTGLKVAIVGRPNVGKSSLLNAWSQS 247

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476

 Score = 42.9 bits (102), Expect = 7e-05
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 4/29 (13%)

Query: 216 RAVRAG----IVGYPNVGKSSLINRLLKR 240
           R V  G    I G PN GKS+L+N LL +
Sbjct: 228 RIVSEGVSTVIAGKPNAGKSTLLNTLLGQ 256

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* Length = 482

 Score = 42.9 bits (102), Expect = 8e-05
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 4/29 (13%)

Query: 216 RAVRAG----IVGYPNVGKSSLINRLLKR 240
             +  G    IVG PNVGKS+L+NRLL  
Sbjct: 238 ILLNRGLRMVIVGKPNVGKSTLLNRLLNE 266

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A Length = 195

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 20/49 (40%), Positives = 27/49 (55%)

Query: 223 VGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPG 271
           VG  NVGKSSL+N L  R++   +  PG TR + +        F+D PG
Sbjct: 29  VGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPG 77

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 Length = 342

 Score = 40.6 bits (96), Expect = 4e-04
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 29/71 (40%)

Query: 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRP--------------GVTRVLKWVRFGKDLE 265
            G+VG+P+VGKS+L++ +       ++ +P              G+      V       
Sbjct: 161 VGLVGFPSVGKSTLLSVV-------SSAKPKIADYHFTTLVPNLGM------VETDDGRS 207

Query: 266 FL--DSPGIIP 274
           F+  D PG+I 
Sbjct: 208 FVMADLPGLIE 218

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 Length = 392

 Score = 40.2 bits (95), Expect = 6e-04
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 219 RAGIVGYPNVGKSSLINRLLKRRMCPAA 246
           + GIVG PNVGKS+    + K  +   A
Sbjct: 22  KTGIVGMPNVGKSTFFRAITKSVLGNPA 49

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 Length = 416

 Score = 39.8 bits (94), Expect = 7e-04
 Identities = 21/70 (30%), Positives = 26/70 (37%), Gaps = 29/70 (41%)

Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRP--------------GVTRVLKWVRFGKDLEF 266
           G+VGYPN GKSSL+  +           P              GV      V   ++  F
Sbjct: 161 GLVGYPNAGKSSLLAAM-------TRAHPKIAPYPFTTLSPNLGV------VEVSEEERF 207

Query: 267 L--DSPGIIP 274
              D PGII 
Sbjct: 208 TLADIPGIIE 217

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	316
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	100.0
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	100.0
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.92
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.91
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.88
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.87
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.84
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	99.83
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.79
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	99.78
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.73
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.49
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.36
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.33
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.28
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.25
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.24
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.12
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.12
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.05
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.04
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.02
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.01
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.0
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.0
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.0
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.0
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	98.99
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	98.99
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	98.99
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	98.98
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	98.97
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	98.97
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	98.97
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	98.96
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	98.95
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	98.95
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	98.94
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	98.94
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	98.93
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	98.92
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	98.92
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	98.91
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	98.9
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	98.89
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	98.89
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	98.88
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	98.87
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	98.86
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	98.85
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	98.85
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	98.85
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	98.84
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	98.84
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.82
2wji_A	165	Ferrous iron transport protein B homolog; membrane	98.81
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	98.8
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	98.79
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	98.79
1wxq_A	397	GTP-binding protein; structural genomics, riken st	98.79
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	98.78
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	98.77
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	98.77
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	98.75
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	98.75
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	98.74
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	98.74
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	98.73
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	98.73
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	98.73
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	98.73
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	98.71
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	98.71
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	98.71
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	98.71
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	98.69
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	98.69
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	98.69
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.69
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	98.69
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	98.69
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	98.67
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	98.67
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	98.67
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	98.66
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	98.66
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	98.66
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	98.65
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	98.65
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	98.64
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	98.64
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	98.64
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	98.63
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	98.63
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	98.63
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	98.63
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	98.61
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	98.61
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	98.61
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	98.6
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	98.59
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	98.59
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	98.58
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	98.58
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	98.57
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	98.57
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	98.56
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	98.56
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	98.56
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	98.55
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	98.55
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	98.54
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	98.54
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	98.54
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	98.54
2ged_A	193	SR-beta, signal recognition particle receptor beta	98.54
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	98.54
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	98.54
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	98.53
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	98.53
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	98.53
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	98.52
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	98.52
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	98.52
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	98.52
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	98.52
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	98.52
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	98.52
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	98.52
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	98.51
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	98.51
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	98.51
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	98.51
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	98.51
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	98.51
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	98.51
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	98.5
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	98.5
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	98.5
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	98.5
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	98.5
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	98.5
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	98.5
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	98.49
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	98.49
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	98.49
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	98.49
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	98.49
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	98.49
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	98.48
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	98.48
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	98.48
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	98.48
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	98.48
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	98.47
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	98.47
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	98.47
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	98.47
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.47
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	98.46
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	98.46
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	98.46
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	98.46
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	98.46
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	98.45
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	98.45
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	98.45
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	98.45
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	98.45
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	98.45
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	98.45
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	98.45
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	98.44
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	98.44
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	98.44
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	98.44
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	98.43
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	98.43
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	98.43
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	98.43
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	98.43
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	98.43
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	98.43
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	98.43
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	98.43
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	98.43
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	98.43
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	98.43
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	98.42
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	98.42
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	98.42
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	98.42
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	98.42
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	98.42
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	98.41
3llu_A	196	RAS-related GTP-binding protein C; structural geno	98.41
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	98.41
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	98.41
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	98.4
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	98.4
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	98.4
2fh5_B	214	SR-beta, signal recognition particle receptor beta	98.4
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	98.4
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	98.4
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	97.77
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	98.4
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	98.4
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	98.4
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	98.39
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	98.39
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	98.39
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	98.38
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	98.38
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	98.38
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	98.38
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	98.37
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	98.37
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	98.37
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	98.37
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	98.37
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	98.37
2fh5_B	214	SR-beta, signal recognition particle receptor beta	98.37
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	98.37
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	98.36
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	98.36
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	98.36
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	98.36
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	98.36
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	98.35
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	98.35
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	98.35
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	98.34
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	98.34
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	98.34
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	98.34
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	98.34
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	98.34
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	98.33
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	98.33
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	98.33
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	98.33
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	98.32
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	98.32
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	98.32
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	98.31
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	98.31
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	98.31
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	98.3
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	98.3
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	98.3
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	98.3
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	98.29
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	98.29
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	98.28
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	98.28
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	98.28
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	98.28
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	98.28
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	98.28
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	98.27
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	98.27
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	98.26
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	98.26
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	98.26
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	98.25
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	98.25
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	98.25
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	98.25
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	98.24
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	98.24
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	98.24
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	98.24
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	98.23
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	98.23
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	98.22
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	98.22
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	98.22
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	98.22
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	98.22
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	98.22
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	98.21
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	98.21
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	98.2
1nrj_B	218	SR-beta, signal recognition particle receptor beta	98.2
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	98.2
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	98.2
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	98.2
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	98.19
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	98.18
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	98.18
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	98.18
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	98.17
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	98.17
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	98.16
3llu_A	196	RAS-related GTP-binding protein C; structural geno	98.16
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	98.15
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	98.15
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	98.14
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	98.14
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	98.12
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	98.12
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	98.12
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	98.12
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	98.12
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	98.12
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	97.4
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	98.11
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	98.09
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	98.08
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	98.08
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	98.07
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	98.06
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	98.05
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	98.05
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.05
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	98.04
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	98.03
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	98.03
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	98.02
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	98.02
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	98.01
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	98.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	98.0
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	98.0
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	97.99
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.98
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	97.96
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	97.96
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	97.95
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	97.95
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	97.95
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	97.94
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.94
1wb1_A	482	Translation elongation factor SELB; selenocysteine	97.93
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	97.93
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	97.92
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	97.92
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	97.92
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	97.91
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	97.88
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	97.88
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	97.88
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	97.88
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	97.87
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	97.84
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	97.84
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	97.83
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	97.82
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	97.81
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	97.8
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.79
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	97.78
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	97.78
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.73
1nrj_B	218	SR-beta, signal recognition particle receptor beta	97.73
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	97.72
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	97.71
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.69
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	97.69
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	97.67
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	97.67
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.67
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	97.67
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	97.66
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	97.66
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	97.64
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.61
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	97.6
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	97.59
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	97.59
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	97.58
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	97.56
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	97.49
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.48
1wxq_A	397	GTP-binding protein; structural genomics, riken st	97.47
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	97.42
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	97.41
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	97.4
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	97.37
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	97.35
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.35
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	97.34
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	97.34
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	97.34
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	97.31
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	97.27
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	97.26
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	97.23
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	97.2
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.13
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	97.11
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	97.05
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	97.03
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	96.98
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.89
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	96.86
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.82
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	96.79
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	96.77
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.74
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	96.73
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	96.7
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	96.67
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.59
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	96.56
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	96.49
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	96.43
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	96.35
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	96.15
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	96.14
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.02
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	96.0
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	95.92
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	95.75
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	95.67
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	95.54
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	95.44
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	95.4
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	95.4
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	95.37
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	95.37
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	95.34
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	95.34
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	95.16
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	95.12
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	95.07
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	95.02
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	94.99
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	94.95
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	94.92
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	94.81
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	94.73
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	94.67
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	94.52
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	94.36
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	94.33
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	94.3
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	94.29
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	94.27
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	94.27
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	94.2
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	94.19
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	94.14
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	94.07
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	94.0
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	93.99
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	93.98
1g6h_A	257	High-affinity branched-chain amino acid transport	93.94
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	93.94
1b0u_A	262	Histidine permease; ABC transporter, transport pro	93.92
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	93.92
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	93.92
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	93.92
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	93.81
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	93.8
1sgw_A	214	Putative ABC transporter; structural genomics, P p	93.79
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	93.76
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	93.73
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	93.7
1ji0_A	240	ABC transporter; ATP binding protein, structural g	93.67
2ghi_A	260	Transport protein; multidrug resistance protein, M	93.67
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	93.65
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	93.65
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	93.62
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	93.57
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	93.57
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	93.56
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	93.54
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	93.52
2eyu_A	261	Twitching motility protein PILT; pilus retraction	93.5
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	93.45
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	93.44
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	93.37
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	93.34
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	93.33
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	93.32
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	93.32
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	93.3
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	93.29
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	93.24
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	93.18
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	93.13
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	93.08
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	93.03
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	92.96
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	92.95
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	92.94
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	92.93
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	92.92
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	92.92
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	92.9
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	92.89
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	92.89
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	92.88
4a74_A	231	DNA repair and recombination protein RADA; hydrola	92.84
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	92.82
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	92.82
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	92.75
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	92.7
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	92.68

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=100.00  E-value=1e-41  Score=316.71  Aligned_cols=214  Identities=38%  Similarity=0.708  Sum_probs=175.9

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCEEEEEEccCCCChHhHHHHHHHHHhcCceE
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKV  179 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~~v  179 (316)
                      ||||||||.++.+++.+.++++|+|++|+|+|+|.+.+++.+.+++.++|.++|+||+||++....+.|.+++.+.|+++
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~~~   82 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQGIRS   82 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHCSSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCE
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHHCCCCEEEEEECcccCCHHHHHHHHHHHHhcCCcE
Confidence            89999999999999999999999999999999999999999999999999999999999999877888999998778889


Q ss_pred             EEeccccccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEE
Q 021210          180 IFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR  259 (316)
Q Consensus       180 i~iSa~~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~  259 (316)
                      +++||+++.|+++|.+.+.++..........++..+.+++++++|+||||||||||+|.+.+.+.+++.||||++.+++.
T Consensus        83 i~iSA~~~~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~  162 (282)
T 1puj_A           83 LSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVK  162 (282)
T ss_dssp             EECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEE
T ss_pred             EEEECCCcccHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEE
Confidence            99999999999999988877655433222334445567899999999999999999999999899999999999998888


Q ss_pred             eCCcEEEEeCCCcccCCCCCHHHHHHHHhcccccccCcchHHHHHHHHHHHHcC
Q 021210          260 FGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARI  313 (316)
Q Consensus       260 ~~~~~~liDTPGi~~~~~~~~~~~~~La~~~~i~~~~~~~~~v~~~ll~~L~~~  313 (316)
                      ++.++.|+||||+..+...+.+.+.++++++++.+..++.++++.++++.|+++
T Consensus       163 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~  216 (282)
T 1puj_A          163 VGKELELLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFLEEH  216 (282)
T ss_dssp             ETTTEEEEECCCCCCSCCCCHHHHHHHHHHTSSCTTSSCHHHHHHHHHHHHHHH
T ss_pred             eCCCEEEEECcCcCCCCCCCHHHHHHHHHhCCcchhhCCHHHHHHHHHHHHHHh
Confidence            888999999999999888888889999999999999999999999999998753

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=100.00  E-value=7.3e-36  Score=274.54  Aligned_cols=165  Identities=36%  Similarity=0.687  Sum_probs=129.7

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCEEEEEEccCCCChHhHHHHHHHHHhcCceE
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKV  179 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~~v  179 (316)
                      +|||||||.++.+++.+.++++|+|++|+|+|+|.+.+++.+. ++ ++|.++|+||+||++....+.|.+++++.|+++
T Consensus         1 ~~w~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll-~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~v   78 (262)
T 3cnl_A            1 MSWYPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS-RKETIILLNKVDIADEKTTKKWVEFFKKQGKRV   78 (262)
T ss_dssp             --------CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT-TSEEEEEEECGGGSCHHHHHHHHHHHHHTTCCE
T ss_pred             CCCCchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc-CCCcEEEEECccCCCHHHHHHHHHHHHHcCCeE
Confidence            3899999999999999999999999999999999999887777 66 999999999999999877888999998888888


Q ss_pred             EEeccccccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEE
Q 021210          180 IFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR  259 (316)
Q Consensus       180 i~iSa~~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~  259 (316)
                       ++||+++.|+++|.+.+....                .+++++|.||||||||+|+|.+...+.+++.||+|+..+++.
T Consensus        79 -~iSa~~~~gi~~L~~~l~~~~----------------~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~  141 (262)
T 3cnl_A           79 -ITTHKGEPRKVLLKKLSFDRL----------------ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFS  141 (262)
T ss_dssp             -EECCTTSCHHHHHHHHCCCTT----------------CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEE
T ss_pred             -EEECCCCcCHHHHHHHHHHhh----------------hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEE
Confidence             999999999888766543221                469999999999999999999998888999999999998888


Q ss_pred             eCCcEEEEeCCCcccCCC-CCHHHH
Q 021210          260 FGKDLEFLDSPGIIPMRI-SDQAAA  283 (316)
Q Consensus       260 ~~~~~~liDTPGi~~~~~-~~~~~~  283 (316)
                      ++.++.|+||||+..+.+ .+.+.+
T Consensus       142 ~~~~~~l~DtpG~~~~~~~~~~~~~  166 (262)
T 3cnl_A          142 LENGVKILDTPGILYKNIFSEDLAA  166 (262)
T ss_dssp             CTTSCEEESSCEECCCCCCSHHHHH
T ss_pred             eCCCEEEEECCCcccCcCCCChhhc
Confidence            888899999999998877 555444

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.92  E-value=6e-25  Score=211.03  Aligned_cols=154  Identities=21%  Similarity=0.280  Sum_probs=129.5

Q ss_pred             HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCEEEEEEccCCCChH----hHHHHHHH-HHhcCc---eE
Q 021210          108 AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMA----DRNAWATY-FAKQGT---KV  179 (316)
Q Consensus       108 ~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~IlVlNK~DLv~~~----~~~~~~~~-~~~~g~---~v  179 (316)
                      .++.+.+.+....+|++++|+|++++.....+.+.+++.++|+++|+||+||++..    ...+|... +++.|.   ++
T Consensus        59 e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v  138 (369)
T 3ec1_A           59 DDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDV  138 (369)
T ss_dssp             CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHCTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEE
T ss_pred             HHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHhCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccE
Confidence            45666666777899999999999999888888899998899999999999998753    34556543 556665   78


Q ss_pred             EEeccccccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcC-----cccccCCCCCceee
Q 021210          180 IFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR-----RMCPAAPRPGVTRV  254 (316)
Q Consensus       180 i~iSa~~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~-----~~~~vs~~pgtT~~  254 (316)
                      +++||++|.|+++|.+.+.++...              .+++++|.||||||||+|+|++.     ....+++.||||++
T Consensus       139 ~~iSA~~g~gi~~L~~~I~~~~~~--------------~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~  204 (369)
T 3ec1_A          139 CLVSAAKGIGMAKVMEAINRYREG--------------GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLD  204 (369)
T ss_dssp             EECBTTTTBTHHHHHHHHHHHHTT--------------SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCE
T ss_pred             EEEECCCCCCHHHHHHHHHhhccc--------------CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEe
Confidence            999999999999999887765421              25899999999999999999987     56788999999999


Q ss_pred             EEEEEeCCcEEEEeCCCcccC
Q 021210          255 LKWVRFGKDLEFLDSPGIIPM  275 (316)
Q Consensus       255 ~~~~~~~~~~~liDTPGi~~~  275 (316)
                      ...+.++.++.++||||+...
T Consensus       205 ~~~~~~~~~~~liDtPG~~~~  225 (369)
T 3ec1_A          205 MIEIPLESGATLYDTPGIINH  225 (369)
T ss_dssp             EEEEECSTTCEEEECCSCCCC
T ss_pred             eEEEEeCCCeEEEeCCCcCcH
Confidence            988888888999999999854

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.91  E-value=1.5e-24  Score=208.22  Aligned_cols=155  Identities=26%  Similarity=0.361  Sum_probs=122.8

Q ss_pred             HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCEEEEEEccCCCChH----hHHHHHHH-HHhcCc---eE
Q 021210          108 AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMA----DRNAWATY-FAKQGT---KV  179 (316)
Q Consensus       108 ~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~IlVlNK~DLv~~~----~~~~~~~~-~~~~g~---~v  179 (316)
                      .++.+.+.+..+.+|++++|+|++++.....+.+.+++.++|+++|+||+||.+..    +..+|... +++.|+   ++
T Consensus        57 e~f~~~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v  136 (368)
T 3h2y_A           57 DDFLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDV  136 (368)
T ss_dssp             HHHHHHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEE
T ss_pred             HHHHHHHHHHhccCcEEEEEEECCCCcccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccE
Confidence            45666666677788899999999988777777888888899999999999998654    35556543 455676   78


Q ss_pred             EEeccccccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCc------ccccCCCCCcee
Q 021210          180 IFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRR------MCPAAPRPGVTR  253 (316)
Q Consensus       180 i~iSa~~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~------~~~vs~~pgtT~  253 (316)
                      +++||++|.|+++|.+.+.++...              .+++++|.||||||||+|+|++..      ...++..||||+
T Consensus       137 ~~iSA~~g~gi~~L~~~l~~~~~~--------------~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~  202 (368)
T 3h2y_A          137 FLISAAKGQGIAELADAIEYYRGG--------------KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTL  202 (368)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHTT--------------SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----
T ss_pred             EEEeCCCCcCHHHHHhhhhhhccc--------------ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeec
Confidence            999999999999998887765321              358999999999999999999853      456899999999


Q ss_pred             eEEEEEeCCcEEEEeCCCcccCC
Q 021210          254 VLKWVRFGKDLEFLDSPGIIPMR  276 (316)
Q Consensus       254 ~~~~~~~~~~~~liDTPGi~~~~  276 (316)
                      +...+.++.++.++||||+....
T Consensus       203 ~~~~~~~~~~~~liDtPG~~~~~  225 (368)
T 3h2y_A          203 DLIDIPLDEESSLYDTPGIINHH  225 (368)
T ss_dssp             CEEEEESSSSCEEEECCCBCCTT
T ss_pred             ceEEEEecCCeEEEeCCCcCcHH
Confidence            99988888789999999998653

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.88  E-value=2e-22  Score=197.26  Aligned_cols=165  Identities=23%  Similarity=0.328  Sum_probs=116.8

Q ss_pred             HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChHhHHHHHHHHHhcCc-eEEEecc
Q 021210          108 AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQGT-KVIFSNG  184 (316)
Q Consensus       108 ~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~-~vi~iSa  184 (316)
                      .++.++....+++||++|+|+|++.+.+..+..+..++.  ++|+++|+||+|+....+...+.+ +.++|. +++++||
T Consensus        69 ~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~~~~~~~~~-~~~lg~~~~~~iSA  147 (439)
T 1mky_A           69 QKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFEREVKPE-LYSLGFGEPIPVSA  147 (439)
T ss_dssp             HHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHHHHHTHHH-HGGGSSCSCEECBT
T ss_pred             HHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHH-HHhcCCCCEEEEec
Confidence            345666778899999999999999988877777777765  789999999999854311111123 445665 6899999


Q ss_pred             ccccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEe-C
Q 021210          185 QLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF-G  261 (316)
Q Consensus       185 ~~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~-~  261 (316)
                      ++|.|+++|.+.+............+.......++++++|.||||||||+|+|++.....+++.||||++..  .+.. +
T Consensus       148 ~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g  227 (439)
T 1mky_A          148 EHNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG  227 (439)
T ss_dssp             TTTBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT
T ss_pred             cCCCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECC
Confidence            999999999887755433211000010012346899999999999999999999998888999999999853  2333 5


Q ss_pred             CcEEEEeCCCcc
Q 021210          262 KDLEFLDSPGII  273 (316)
Q Consensus       262 ~~~~liDTPGi~  273 (316)
                      ..+.++||||+.
T Consensus       228 ~~~~l~Dt~G~~  239 (439)
T 1mky_A          228 RKYVFVDTAGLR  239 (439)
T ss_dssp             EEEEESSCSCC-
T ss_pred             EEEEEEECCCCc
Confidence            568899999985

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.87  E-value=1e-22  Score=199.24  Aligned_cols=168  Identities=20%  Similarity=0.240  Sum_probs=113.9

Q ss_pred             cccccchH-------HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChHhHHHHHH
Q 021210          100 VQWYPGHI-------AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWAT  170 (316)
Q Consensus       100 i~~~Pgh~-------~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~~~~~~~  170 (316)
                      +-++||+.       .++.++....+++||++|+|+|++++.+..+..+.+++.  ++|+++|+||+|+.+...  +..+
T Consensus        55 l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~--~~~~  132 (436)
T 2hjg_A           55 LIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA--NIYD  132 (436)
T ss_dssp             EEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-------CCCS
T ss_pred             EEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchh--hHHH
Confidence            45567763       356666777899999999999999998877777877764  789999999999975421  1111


Q ss_pred             HHHhcCc-eEEEeccccccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCC
Q 021210          171 YFAKQGT-KVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP  249 (316)
Q Consensus       171 ~~~~~g~-~vi~iSa~~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~p  249 (316)
                       +.++|. +++++||++|.|+.+|.+.+.+......    +.......++|+++|.||||||||+|+|++.....+++.|
T Consensus       133 -~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~----~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~  207 (436)
T 2hjg_A          133 -FYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIP----ETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVA  207 (436)
T ss_dssp             -SGGGSSCCCEECBTTTTBTHHHHHHHHHHTGGGCC----SSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---
T ss_pred             -HHHcCCCCeEEEeCcCCCChHHHHHHHHHhcCccc----cccccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCC
Confidence             234554 7899999999999999888766543211    1111234689999999999999999999999888899999


Q ss_pred             CceeeEE--EEEe-CCcEEEEeCCCccc
Q 021210          250 GVTRVLK--WVRF-GKDLEFLDSPGIIP  274 (316)
Q Consensus       250 gtT~~~~--~~~~-~~~~~liDTPGi~~  274 (316)
                      |||++..  .+.. +..+.|+||||+..
T Consensus       208 gtT~d~~~~~~~~~~~~~~l~DT~G~~~  235 (436)
T 2hjg_A          208 GTTRDAVDTSFTYNQQEFVIVDTAGMRK  235 (436)
T ss_dssp             ------CCEEEEETTEEEEETTHHHHTC
T ss_pred             CceeeeeEEEEEECCeEEEEEECCCcCc
Confidence            9999863  2222 45799999999964

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.84  E-value=9.2e-21  Score=186.33  Aligned_cols=168  Identities=20%  Similarity=0.259  Sum_probs=118.0

Q ss_pred             cccccch-------HHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChHhHHHHHH
Q 021210          100 VQWYPGH-------IAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWAT  170 (316)
Q Consensus       100 i~~~Pgh-------~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~~~~~~~  170 (316)
                      +-++||.       ..++.+.....++.+|++|+|+|++.+.+..+..+.+++.  ++|+++|+||+|+.+..+  .+.+
T Consensus        75 liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~~--~~~e  152 (456)
T 4dcu_A           75 LIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA--NIYD  152 (456)
T ss_dssp             EECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC-----------CC
T ss_pred             EEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhhh--hHHH
Confidence            5677882       3667777778899999999999999988888888888876  789999999999875421  1222


Q ss_pred             HHHhcC-ceEEEeccccccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCC
Q 021210          171 YFAKQG-TKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP  249 (316)
Q Consensus       171 ~~~~~g-~~vi~iSa~~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~p  249 (316)
                       +..+| ..++++||++|.|+.+|.+.+........    .........+|+++|.+|||||||+|+|++.....+++.|
T Consensus       153 -~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~----~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~  227 (456)
T 4dcu_A          153 -FYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIP----ETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVA  227 (456)
T ss_dssp             -SGGGSSSSEEECCTTTCTTHHHHHHHHHTTGGGSC----SSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC--
T ss_pred             -HHHcCCCceEEeecccccchHHHHHHHHhhccccc----ccccccccceeEEecCCCCCHHHHHHHHhCCCccccCCCC
Confidence             23344 35789999999999999887765433211    1112234689999999999999999999998888999999


Q ss_pred             CceeeE--EEEEe-CCcEEEEeCCCccc
Q 021210          250 GVTRVL--KWVRF-GKDLEFLDSPGIIP  274 (316)
Q Consensus       250 gtT~~~--~~~~~-~~~~~liDTPGi~~  274 (316)
                      |||++.  ..+.. +..+.|+||||+..
T Consensus       228 gtt~~~~~~~~~~~~~~~~l~DT~G~~~  255 (456)
T 4dcu_A          228 GTTRDAVDTSFTYNQQEFVIVDTAGMRK  255 (456)
T ss_dssp             ----CTTSEEEEETTEEEEETTGGGTTT
T ss_pred             CeEEEEEEEEEEECCceEEEEECCCCCc
Confidence            999985  23333 45789999999864

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=99.83  E-value=2.3e-21  Score=181.70  Aligned_cols=140  Identities=21%  Similarity=0.250  Sum_probs=107.4

Q ss_pred             HHhhcCeEEEEEeCCCCCCCCcHHHHHHh-----CCCCEEEEEEccCCCChHh----HHHHHHHHHhcCceEEEeccccc
Q 021210          117 QLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMAD----RNAWATYFAKQGTKVIFSNGQLG  187 (316)
Q Consensus       117 ~i~~aDlIl~VvDar~~~~~~~~~i~~~l-----~~k~~IlVlNK~DLv~~~~----~~~~~~~~~~~g~~vi~iSa~~g  187 (316)
                      .++++|++++|+|++.|....+ .+.+++     .+++.++|+||+||++..+    .++|.++|.+.|++++++|+.++
T Consensus        83 ~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~  161 (307)
T 1t9h_A           83 PICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQ  161 (307)
T ss_dssp             TEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHH
T ss_pred             HHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCC
Confidence            5899999999999999988877 777776     4789999999999998744    67899999888999999999999


Q ss_pred             cchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCC-------CceeeEEEEEe
Q 021210          188 MGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-------GVTRVLKWVRF  260 (316)
Q Consensus       188 ~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~p-------gtT~~~~~~~~  260 (316)
                      .|+++|.+..    .              .-.++++|.+|||||||+|+|.+.....++.++       +||+..+++..
T Consensus       162 ~g~~~L~~~~----~--------------G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~  223 (307)
T 1t9h_A          162 DSLADIIPHF----Q--------------DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHT  223 (307)
T ss_dssp             TTCTTTGGGG----T--------------TSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEE
T ss_pred             CCHHHHHhhc----C--------------CCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhc
Confidence            9988876532    1              124899999999999999999987665665554       57877666666


Q ss_pred             CCcEEEEeCCCcccCC
Q 021210          261 GKDLEFLDSPGIIPMR  276 (316)
Q Consensus       261 ~~~~~liDTPGi~~~~  276 (316)
                      . ..+++||||+....
T Consensus       224 ~-~g~v~dtpg~~~~~  238 (307)
T 1t9h_A          224 S-GGLVADTPGFSSLE  238 (307)
T ss_dssp             T-TEEEESSCSCSSCC
T ss_pred             C-CEEEecCCCccccc
Confidence            5 56899999998654

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.79  E-value=3.4e-19  Score=166.42  Aligned_cols=138  Identities=23%  Similarity=0.354  Sum_probs=106.4

Q ss_pred             HHhhcCeEEEEEeCCCCCCCCcHHHHHHh-----CCCCEEEEEEccCCCChHh---HHHHHHHHHhcCceEEEecccccc
Q 021210          117 QLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMAD---RNAWATYFAKQGTKVIFSNGQLGM  188 (316)
Q Consensus       117 ~i~~aDlIl~VvDar~~~~~~~~~i~~~l-----~~k~~IlVlNK~DLv~~~~---~~~~~~~~~~~g~~vi~iSa~~g~  188 (316)
                      .++++|++++|+|+++|..+.+ .+.+++     .+.|+++|+||+||.+..+   .+++.+++.+.|++++++||++|.
T Consensus        76 ~~~naD~vliV~d~~~p~~s~~-~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~  154 (302)
T 2yv5_A           76 KVANVDRVIIVETLKMPEFNNY-LLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGE  154 (302)
T ss_dssp             EEESCCEEEEEECSTTTTCCHH-HHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCT
T ss_pred             HHHhcCEEEEEEECCCCCCCHH-HHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence            5899999999999998764433 344443     4789999999999997752   566777787788999999999999


Q ss_pred             chhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCC-------CceeeEEEEEeC
Q 021210          189 GTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-------GVTRVLKWVRFG  261 (316)
Q Consensus       189 gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~p-------gtT~~~~~~~~~  261 (316)
                      |+++|.+.+.   .               -.++++|.+|+|||||+|+|. .....++.+.       +||+....+...
T Consensus       155 gi~~L~~~l~---G---------------~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~  215 (302)
T 2yv5_A          155 GIDELVDYLE---G---------------FICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFG  215 (302)
T ss_dssp             THHHHHHHTT---T---------------CEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEET
T ss_pred             CHHHHHhhcc---C---------------cEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcC
Confidence            9998876532   1               137999999999999999999 6655555544       377776666664


Q ss_pred             CcEEEEeCCCccc
Q 021210          262 KDLEFLDSPGIIP  274 (316)
Q Consensus       262 ~~~~liDTPGi~~  274 (316)
                      ...+++||||+..
T Consensus       216 ~~g~v~d~pg~~~  228 (302)
T 2yv5_A          216 KGSFVGDTPGFSK  228 (302)
T ss_dssp             TTEEEESSCCCSS
T ss_pred             CCcEEEECcCcCc
Confidence            5578999999974

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=99.78  E-value=4.5e-19  Score=169.27  Aligned_cols=144  Identities=23%  Similarity=0.331  Sum_probs=109.4

Q ss_pred             HHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-----CCCCEEEEEEccCCCChHh---HHHHHHHHHhcCceEEEeccc
Q 021210          114 LKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMAD---RNAWATYFAKQGTKVIFSNGQ  185 (316)
Q Consensus       114 l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l-----~~k~~IlVlNK~DLv~~~~---~~~~~~~~~~~g~~vi~iSa~  185 (316)
                      .+..++++|+|++| |++.|....+ .+.+++     .+++.++|+||+||++..+   .++|.++|.+.|++++++|+.
T Consensus       124 ~~~i~anvD~v~iv-~a~~P~~~~~-~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~  201 (358)
T 2rcn_A          124 VKPIAANIDQIVIV-SAILPELSLN-IIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSH  201 (358)
T ss_dssp             CEEEEECCCEEEEE-EESTTTCCHH-HHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTT
T ss_pred             HHHHHhcCCEEEEE-EeCCCCCCHH-HHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecC
Confidence            34457999999965 7788766655 577775     3788899999999998765   667889999999999999999


Q ss_pred             cccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcc-cccCCCC---C----ceeeEEE
Q 021210          186 LGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRP---G----VTRVLKW  257 (316)
Q Consensus       186 ~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~-~~vs~~p---g----tT~~~~~  257 (316)
                      ++.|+++|...+   ..               -.++++|.+|||||||+|+|.+... ..++.+.   |    +|+....
T Consensus       202 ~~~gl~~L~~~~---~G---------------~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i  263 (358)
T 2rcn_A          202 TQDGLKPLEEAL---TG---------------RISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARL  263 (358)
T ss_dssp             TTBTHHHHHHHH---TT---------------SEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEE
T ss_pred             CCcCHHHHHHhc---CC---------------CEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEE
Confidence            999988876532   11               1489999999999999999998766 5555432   3    6676677


Q ss_pred             EEeCCcEEEEeCCCcccCCC
Q 021210          258 VRFGKDLEFLDSPGIIPMRI  277 (316)
Q Consensus       258 ~~~~~~~~liDTPGi~~~~~  277 (316)
                      ..+..+..++||||+....+
T Consensus       264 ~~v~q~~~l~dtpgv~e~~l  283 (358)
T 2rcn_A          264 YHFPHGGDVIDSPGVREFGL  283 (358)
T ss_dssp             EECTTSCEEEECHHHHTCCC
T ss_pred             EEECCCCEecCcccHHHhhh
Confidence            77776778999999976543

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.73  E-value=8.8e-18  Score=156.69  Aligned_cols=140  Identities=21%  Similarity=0.353  Sum_probs=100.5

Q ss_pred             HHhhcCeEEEEEeCCCCCCCCcHHHHHHh-----CCCCEEEEEEccCCCChHh---HHHHHHHHHhcCceEEEecccccc
Q 021210          117 QLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMAD---RNAWATYFAKQGTKVIFSNGQLGM  188 (316)
Q Consensus       117 ~i~~aDlIl~VvDar~~~~~~~~~i~~~l-----~~k~~IlVlNK~DLv~~~~---~~~~~~~~~~~g~~vi~iSa~~g~  188 (316)
                      .++++|++|+|+|++++.+..+ .+..++     .+.|+++|+||+||.+..+   ..+|.+.+... ..++.+||++|.
T Consensus        81 ~~~~ad~vilV~D~~~~~~s~~-~l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~-~~~~~~SAktg~  158 (301)
T 1u0l_A           81 HVANVDQVILVVTVKMPETSTY-IIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGL-YPIVKTSAKTGM  158 (301)
T ss_dssp             TEESCCEEEEEECSSTTCCCHH-HHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTT-SCEEECCTTTCT
T ss_pred             ccccCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhh-CcEEEEECCCCc
Confidence            5789999999999998764432 344443     4789999999999987654   34555555433 789999999999


Q ss_pred             chhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCC-------CceeeEEEEEeC
Q 021210          189 GTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-------GVTRVLKWVRFG  261 (316)
Q Consensus       189 gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~p-------gtT~~~~~~~~~  261 (316)
                      |++++...+.   .               -.++++|.+|+|||||+|+|.+.....++.+.       ++|+....+...
T Consensus       159 gv~~lf~~l~---g---------------eiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~  220 (301)
T 1u0l_A          159 GIEELKEYLK---G---------------KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFD  220 (301)
T ss_dssp             THHHHHHHHS---S---------------SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECT
T ss_pred             CHHHHHHHhc---C---------------CeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcC
Confidence            9998876532   1               13799999999999999999987655554433       366655555554


Q ss_pred             CcEEEEeCCCcccCC
Q 021210          262 KDLEFLDSPGIIPMR  276 (316)
Q Consensus       262 ~~~~liDTPGi~~~~  276 (316)
                      ....++||||+....
T Consensus       221 ~~g~v~q~p~~~~~~  235 (301)
T 1u0l_A          221 FGGYVVDTPGFANLE  235 (301)
T ss_dssp             TSCEEESSCSSTTCC
T ss_pred             CCCEEEECcCCCccC
Confidence            556899999987544

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.49  E-value=1.1e-15  Score=145.54  Aligned_cols=156  Identities=18%  Similarity=0.146  Sum_probs=109.2

Q ss_pred             cCeEEEEEeCCCCCCCCcHHHHHHh----CCCCEEEEEEccCCCChHhHHHHHHHHHh-c-CceEEEeccccccchhhhH
Q 021210          121 MDVVIEVRDARIPLSTTHPLMDQWL----GNRKRILVLNREDMISMADRNAWATYFAK-Q-GTKVIFSNGQLGMGTMKLS  194 (316)
Q Consensus       121 aDlIl~VvDar~~~~~~~~~i~~~l----~~k~~IlVlNK~DLv~~~~~~~~~~~~~~-~-g~~vi~iSa~~g~gi~~L~  194 (316)
                      +|.+-.++|++.++...++++.+++    ..++.++++||+|+++....+.|.+++.. . +.....+++..+.+...+.
T Consensus        58 ~~~l~~i~~~~~~l~~~~p~~~~l~~~~~~~k~~~~~Lnk~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  137 (357)
T 2e87_A           58 RDNLRKVLERTPGLSTLPKFYQELVDVLVDRDTFHKAMAGIDWAIRIIRELEERYVERIRYSNDPNEIAELRRQFYGRVA  137 (357)
T ss_dssp             HHHHHHHHHHSCCGGGSCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcccCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Confidence            3455566777777778888888776    67888899999999988888889888875 2 4333344455555555555


Q ss_pred             HHHHHhhhhh-------hhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe---CCcE
Q 021210          195 RLAKALASDV-------NVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDL  264 (316)
Q Consensus       195 ~~L~~l~~~~-------~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~---~~~~  264 (316)
                      +.++.+....       ...++.++......+|+++|.+|||||||+|+|.+.. ..++..|++|++.....+   +..+
T Consensus       138 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~~gvGKSTLin~L~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~  216 (357)
T 2e87_A          138 SVLRDIDDRLRYLNKAREVLKDLPVVDLEIPTVVIAGHPNVGKSTLLKALTTAK-PEIASYPFTTRGINVGQFEDGYFRY  216 (357)
T ss_dssp             HHHHHTHHHHHHHHHHHHHGGGSCCCCSSSCEEEEECSTTSSHHHHHHHHCSSC-CEEECCTTCSSCEEEEEEEETTEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCccCCCCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCeeeceeEEEEEecCceE
Confidence            5544433221       1112222222456789999999999999999999876 567888999998765544   2358


Q ss_pred             EEEeCCCcccCCC
Q 021210          265 EFLDSPGIIPMRI  277 (316)
Q Consensus       265 ~liDTPGi~~~~~  277 (316)
                      .++||||+.....
T Consensus       217 ~l~Dt~G~~~~~~  229 (357)
T 2e87_A          217 QIIDTPGLLDRPI  229 (357)
T ss_dssp             EEEECTTTSSSCS
T ss_pred             EEEeCCCccccch
Confidence            9999999976543

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.36  E-value=1.2e-14  Score=139.23  Aligned_cols=186  Identities=17%  Similarity=0.116  Sum_probs=97.2

Q ss_pred             CCCCCCCCcchhhhhhccccCCcceEEEeccccccccccchHHHHHHHHH--HHHhhcCeEEEEEeCCCCCCC-C-cHHH
Q 021210           66 NSNNSNGSIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELK--DQLKLMDVVIEVRDARIPLST-T-HPLM  141 (316)
Q Consensus        66 ~~~~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~i~~~Pgh~~~~~r~l~--~~i~~aDlIl~VvDar~~~~~-~-~~~i  141 (316)
                      ..| ..+..|-++-+|.....+++.++|.+.+.+.|     ....++.+.  +.+++.|+||+|+|+|.+... . +..+
T Consensus        36 ~~~-~~~~~g~gk~~e~~~~~~~~~v~~~~~l~p~q-----~~~l~~~~~~~~v~dr~~lil~i~~~ra~t~~~~~q~~l  109 (364)
T 2qtf_A           36 SPN-VKFYIQYDKLQQIKNDEEISTLIIFEQLKPRH-----FINIRRELKGKEVLDKILLLLEIFALHAGSKEAKMQIEL  109 (364)
T ss_dssp             SCB-TTTBSCHHHHHHHHTCTTCCEEEESSCCCHHH-----HHHHHHHHTTCEEECHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred             CCC-CcceechhHHHHHhhccCCCEEEECCCCCHHH-----HHHHHHHhCCCceeehHhHHHHHHHhhCcccchhHHHHH
Confidence            444 45667888888877788999999999887765     344555555  578899999999999998654 2 4445


Q ss_pred             HHHhCCCCEEEEEEccCCCChHhHHHHHHHHHhcC-ceEEE--eccccccchhhhHHHHHHhhhhhh-------hhhccc
Q 021210          142 DQWLGNRKRILVLNREDMISMADRNAWATYFAKQG-TKVIF--SNGQLGMGTMKLSRLAKALASDVN-------VKRRSK  211 (316)
Q Consensus       142 ~~~l~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g-~~vi~--iSa~~g~gi~~L~~~L~~l~~~~~-------~~r~~~  211 (316)
                      ..+...+|.+              ..|..+++..+ +.+--  -... ......+.+.+..+.....       ..+..+
T Consensus       110 a~l~~~~~rl--------------~~~~~l~~~~~~i~~~g~ge~~~-e~~~~~~~~~i~~l~~~l~~~~~~r~~~r~~r  174 (364)
T 2qtf_A          110 ARLKYELPII--------------KETYTKSKIGEQQGPLGAGTYGV-ESTIKFYKRRINKLMKELESIKIFKEKSIESN  174 (364)
T ss_dssp             HHHHHHHHHH--------------HHC----------------------CHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred             HHHhhhchhh--------------hhhhHHHHhcCCCCcCCcCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4443222211              12333222211 11000  0000 0001122222222222111       111111


Q ss_pred             CCCccceE-EeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEe-CCcEEEEeCCCcccC
Q 021210          212 GLLPRAVR-AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRF-GKDLEFLDSPGIIPM  275 (316)
Q Consensus       212 ~~~~~~~~-i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~-~~~~~liDTPGi~~~  275 (316)
                        ...+++ |+++|++|||||||+|+|.+.. ..+++.+++|++.  ..+.+ +..+.++||||+...
T Consensus       175 --~~~~~~~V~lvG~~naGKSTLln~L~~~~-~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~  239 (364)
T 2qtf_A          175 --KRNNIPSIGIVGYTNSGKTSLFNSLTGLT-QKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRG  239 (364)
T ss_dssp             ------CCEEEEECBTTSSHHHHHHHHHCC------------CCSCEEEEEETTEEEEEEECCCBCSS
T ss_pred             --hhcCCcEEEEECCCCCCHHHHHHHHHCCC-ccccCCcccccCCEEEEEEECCEEEEEEeCCCchhc
Confidence              112344 9999999999999999999876 4778899999885  33444 456889999998654

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.33  E-value=4.6e-12  Score=123.90  Aligned_cols=130  Identities=16%  Similarity=0.167  Sum_probs=96.8

Q ss_pred             CCCCCCCCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCC-------
Q 021210           65 GNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLS-------  135 (316)
Q Consensus        65 ~~~~~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~-------  135 (316)
                      +.++++...|....|++.++|+|..+.+|....+.  +.++||| .++.+++...++.+|++|+|+|++.+..       
T Consensus        62 ~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~~~~iiDTPGh-~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~  140 (439)
T 3j2k_7           62 ETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGH-KSFVPNMIGGASQADLAVLVISARKGEFETGFEKG  140 (439)
T ss_pred             cchhhhhhhccchhHhhcCceEEEeEEEEecCCeEEEEEECCCh-HHHHHHHHhhHhhCCEEEEEEECCCCccccccCCC
Confidence            34577888999999999999999999988877655  7789999 7899999999999999999999998753       


Q ss_pred             ---CCcHHHHHHhCCCCEEEEEEccCCCCh----Hh----HHHHHHHHHhcC------ceEEEeccccccchhhhHH
Q 021210          136 ---TTHPLMDQWLGNRKRILVLNREDMISM----AD----RNAWATYFAKQG------TKVIFSNGQLGMGTMKLSR  195 (316)
Q Consensus       136 ---~~~~~i~~~l~~k~~IlVlNK~DLv~~----~~----~~~~~~~~~~~g------~~vi~iSa~~g~gi~~L~~  195 (316)
                         .++..+...++.+++++|+||+|+.+.    ..    .++..+++.+.|      ..++++||++|.|+.++.+
T Consensus       141 ~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          141 GQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             chHHHHHHHHHHcCCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence               112222223333448999999999642    11    122333344444      3589999999999998443

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.28  E-value=2.4e-12  Score=123.61  Aligned_cols=58  Identities=38%  Similarity=0.591  Sum_probs=49.4

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEe-CCcEEEEeCCCcccC
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIPM  275 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~-~~~~~liDTPGi~~~  275 (316)
                      ..+|++||+||||||||+|+|++.+ ..++++||||++...  +.. +..+.|+||||+...
T Consensus        72 ~a~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~  132 (376)
T 4a9a_A           72 VASVGFVGFPSVGKSTLLSKLTGTE-SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDG  132 (376)
T ss_dssp             SEEEEEECCCCHHHHHHHHHHHSBC-CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCC
Confidence            4689999999999999999999876 688999999999643  233 567999999999854

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.25  E-value=1.3e-11  Score=121.98  Aligned_cols=127  Identities=17%  Similarity=0.117  Sum_probs=80.0

Q ss_pred             CCCCCCCCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC------
Q 021210           65 GNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST------  136 (316)
Q Consensus        65 ~~~~~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~------  136 (316)
                      +.++++.+.|....|++.++|+|..+..|......  +-++||| .++.+++...++.+|++|+|+|++.+...      
T Consensus        78 ~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDTPG~-~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~  156 (483)
T 3p26_A           78 SSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANFTIVDAPGH-RDFVPNAIMGISQADMAILCVDCSTNAFESGFDLD  156 (483)
T ss_dssp             -----------------CCSSCCCCEEEEECSSCEEEEECCCCC-GGGHHHHHHHHTTCSEEEEEEECCC------CCCC
T ss_pred             CcchhhhhhccchhHhhcCcceEeeeEEEecCCceEEEEECCCc-HHHHHHHHHhhhhCCEEEEEEECCCCccccccchh
Confidence            45677888999999999999999999999877655  7789999 77999999999999999999999986322      


Q ss_pred             ----CcHHHHHHhCCCCEEEEEEccCCCCh--HhHH----HHHHHHHhcC-----ceEEEeccccccchhh
Q 021210          137 ----THPLMDQWLGNRKRILVLNREDMISM--ADRN----AWATYFAKQG-----TKVIFSNGQLGMGTMK  192 (316)
Q Consensus       137 ----~~~~i~~~l~~k~~IlVlNK~DLv~~--~~~~----~~~~~~~~~g-----~~vi~iSa~~g~gi~~  192 (316)
                          ++..+...+..+++++|+||+|+.+.  ...+    +..+++...|     ..++++||++|.|+++
T Consensus       157 ~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          157 GQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             HHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             hhHHHHHHHHHHcCCCcEEEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence                11122223445779999999999862  2222    2223333333     4689999999999974

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.24  E-value=1.1e-11  Score=120.84  Aligned_cols=134  Identities=14%  Similarity=0.211  Sum_probs=94.5

Q ss_pred             CCCCCCCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc---HH
Q 021210           66 NSNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH---PL  140 (316)
Q Consensus        66 ~~~~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~---~~  140 (316)
                      .++.+.+.|+...|++.++|++..+.+|......  +-++||| .++.+.+...+..+|++|+|+|++++.....   ..
T Consensus        72 ~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~~~~~iiDtpGh-~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~  150 (434)
T 1zun_B           72 DVDLALLVDGLQAEREQGITIDVAYRYFSTAKRKFIIADTPGH-EQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSY  150 (434)
T ss_dssp             C--CHHHHHHHHC-----CCCCCEEEEEECSSEEEEEEECCCS-GGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHH
T ss_pred             chhhhhhhccChhHHHCCcEEEeeeeEeecCCceEEEEECCCh-HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHH
Confidence            3455566889999999999999999988876554  7789999 6788888899999999999999998763322   22


Q ss_pred             HHHHhCCCCEEEEEEccCCCCh--Hh----HHHHHHHHHhcC-----ceEEEeccccccchhh------------hHHHH
Q 021210          141 MDQWLGNRKRILVLNREDMISM--AD----RNAWATYFAKQG-----TKVIFSNGQLGMGTMK------------LSRLA  197 (316)
Q Consensus       141 i~~~l~~k~~IlVlNK~DLv~~--~~----~~~~~~~~~~~g-----~~vi~iSa~~g~gi~~------------L~~~L  197 (316)
                      +...++.+++++|+||+|+.+.  +.    .+++.+++.+.+     ..++++||++|.|+++            |.+++
T Consensus       151 ~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~~~w~~g~~L~~~l  230 (434)
T 1zun_B          151 IASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSERSPWYAGQSLMEIL  230 (434)
T ss_dssp             HHHHTTCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTTCTTCCSCCTTHHH
T ss_pred             HHHHcCCCeEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccccCccccCchHHHHH
Confidence            2333344578999999999863  21    233444455556     5789999999999987            66666


Q ss_pred             HHh
Q 021210          198 KAL  200 (316)
Q Consensus       198 ~~l  200 (316)
                      ..+
T Consensus       231 ~~i  233 (434)
T 1zun_B          231 ETV  233 (434)
T ss_dssp             HHS
T ss_pred             hcC
Confidence            665

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.12  E-value=1.5e-10  Score=114.44  Aligned_cols=130  Identities=15%  Similarity=0.119  Sum_probs=82.0

Q ss_pred             CCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHH--hC
Q 021210           71 NGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW--LG  146 (316)
Q Consensus        71 ~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~--l~  146 (316)
                      ...|....|++.++|+|..+..|......  +-++||| .++.+++...+..+|++|+|+|++++......+...+  ..
T Consensus        46 ~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh-~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~  124 (482)
T 1wb1_A           46 SAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGH-ADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHF  124 (482)
T ss_dssp             ------------------CCCEEEETTEEEEECCCSSH-HHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHT
T ss_pred             cccccccccccCccEEecceEEEEECCEEEEEEECCCh-HHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHc
Confidence            34666677888999999988877655443  7789999 7789999999999999999999998653322222222  13


Q ss_pred             CCCEEEEEEccCCCChHhHH----HHHHHHHhc----CceEEEeccccccchhhhHHHHHHhh
Q 021210          147 NRKRILVLNREDMISMADRN----AWATYFAKQ----GTKVIFSNGQLGMGTMKLSRLAKALA  201 (316)
Q Consensus       147 ~k~~IlVlNK~DLv~~~~~~----~~~~~~~~~----g~~vi~iSa~~g~gi~~L~~~L~~l~  201 (316)
                      +.|.++|+||+|+.+.+..+    +..+++.+.    +.+++++||++|.|+++|.+.|.+..
T Consensus       125 ~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i  187 (482)
T 1wb1_A          125 NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTL  187 (482)
T ss_dssp             TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhh
Confidence            56779999999999754332    233344443    35789999999999999998887754

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.12  E-value=8e-11  Score=115.96  Aligned_cols=125  Identities=16%  Similarity=0.130  Sum_probs=61.8

Q ss_pred             CCCCCCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC----------
Q 021210           67 SNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL----------  134 (316)
Q Consensus        67 ~~~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~----------  134 (316)
                      .+++...|....|++.++|++..+.+|....+.  +-++||| .++.+++...+..+|++|+|+|++++.          
T Consensus        90 ~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~~~iiDtPGh-~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~q  168 (467)
T 1r5b_A           90 WYLSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGH-KGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQ  168 (467)
T ss_dssp             -----------------------CCEEECSSEEEEECCCCC------------TTSCSEEEEEEECSTTHHHHTTSTTCC
T ss_pred             hhhhhhcccchhhhhcCceEEeeeEEEecCCeEEEEEECCCc-HHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCc
Confidence            456777899999999999999999888766554  7789999 789999999999999999999999863          


Q ss_pred             CCCcHHHHHHhCCCC-EEEEEEccCCCC----hHh----HHHHHHHHHhc-C------ceEEEeccccccchhhh
Q 021210          135 STTHPLMDQWLGNRK-RILVLNREDMIS----MAD----RNAWATYFAKQ-G------TKVIFSNGQLGMGTMKL  193 (316)
Q Consensus       135 ~~~~~~i~~~l~~k~-~IlVlNK~DLv~----~~~----~~~~~~~~~~~-g------~~vi~iSa~~g~gi~~L  193 (316)
                      +..+..+...+ +.| +++|+||+|+.+    .+.    .++..+++.+. |      ..++++||++|.|+.++
T Consensus       169 t~e~l~~~~~~-~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l  242 (467)
T 1r5b_A          169 TREHAVLARTQ-GINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDR  242 (467)
T ss_dssp             HHHHHHHHHHT-TCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSC
T ss_pred             HHHHHHHHHHc-CCCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccc
Confidence            11122222222 444 999999999964    111    12233444444 3      45899999999998763

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.05  E-value=5.7e-10  Score=107.80  Aligned_cols=125  Identities=17%  Similarity=0.159  Sum_probs=88.0

Q ss_pred             chhhhhhccccCCcceEEEecc-----------------------cc--ccccccchHHHHHHHHHHHHhhcCeEEEEEe
Q 021210           75 EAYEEECDWADLDADLYYWTKS-----------------------LR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRD  129 (316)
Q Consensus        75 g~~~e~e~~~~~d~~~~~~~~~-----------------------~~--~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvD  129 (316)
                      ....|.+.++|++..+..+.-.                       ..  .+-++||| .++.+++...+..+|++|+|+|
T Consensus        37 ~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh-~~f~~~~~~~~~~~D~~ilVvd  115 (410)
T 1kk1_A           37 THSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGH-EALMTTMLAGASLMDGAILVIA  115 (410)
T ss_dssp             --CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEECSSH-HHHHHHHHHCGGGCSEEEEEEE
T ss_pred             cChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEECCCh-HHHHHHHHhhhhhCCEEEEEEE
Confidence            3445677888888776532210                       02  26789999 7788999999999999999999


Q ss_pred             CCCCC-C---CCcHHHHHHhCCCCEEEEEEccCCCChHh----HHHHHHHHHh---cCceEEEeccccccchhhhHHHHH
Q 021210          130 ARIPL-S---TTHPLMDQWLGNRKRILVLNREDMISMAD----RNAWATYFAK---QGTKVIFSNGQLGMGTMKLSRLAK  198 (316)
Q Consensus       130 ar~~~-~---~~~~~i~~~l~~k~~IlVlNK~DLv~~~~----~~~~~~~~~~---~g~~vi~iSa~~g~gi~~L~~~L~  198 (316)
                      ++++. .   ..+..+...+..+++++|+||+|+.+..+    .+++.+++..   .+.+++++||++|.|+++|.+.|.
T Consensus       116 a~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~  195 (410)
T 1kk1_A          116 ANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIE  195 (410)
T ss_dssp             TTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHH
T ss_pred             CCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHH
Confidence            99764 1   22223333455678999999999998653    2233344433   246799999999999999998887


Q ss_pred             Hh
Q 021210          199 AL  200 (316)
Q Consensus       199 ~l  200 (316)
                      ..
T Consensus       196 ~~  197 (410)
T 1kk1_A          196 DF  197 (410)
T ss_dssp             HH
T ss_pred             Hh
Confidence            64

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.04  E-value=5.9e-11  Score=116.62  Aligned_cols=126  Identities=17%  Similarity=0.159  Sum_probs=91.6

Q ss_pred             CCCCCCCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC---------
Q 021210           66 NSNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL---------  134 (316)
Q Consensus        66 ~~~~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~---------  134 (316)
                      .++++.+.|....|++.++|+|..+..|......  +-++||| .++.+++...+..+|++|+|+|++++.         
T Consensus        53 ~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~~~iiDtPGh-~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~  131 (458)
T 1f60_A           53 SFKYAWVLDKLKAERERGITIDIALWKFETPKYQVTVIDAPGH-RDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDG  131 (458)
T ss_dssp             CCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEEEEEEECCCC-TTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTS
T ss_pred             chhhhhhhccchhHHhcCcEEEEEEEEEecCCceEEEEECCCc-HHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcch
Confidence            3455666788889999999999999988876554  6789999 688899999999999999999998653         


Q ss_pred             -CCCcHHHHHHhCCCCEEEEEEccCCCC--hHhH----HHHHHHHHhcC-----ceEEEeccccccchhh
Q 021210          135 -STTHPLMDQWLGNRKRILVLNREDMIS--MADR----NAWATYFAKQG-----TKVIFSNGQLGMGTMK  192 (316)
Q Consensus       135 -~~~~~~i~~~l~~k~~IlVlNK~DLv~--~~~~----~~~~~~~~~~g-----~~vi~iSa~~g~gi~~  192 (316)
                       +.++..+...+..+++++|+||+|+.+  .+..    ++..+++...+     ..++++||++|.|+.+
T Consensus       132 qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~  201 (458)
T 1f60_A          132 QTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  201 (458)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             hHHHHHHHHHHcCCCeEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence             111222222233345899999999984  2221    22333344444     4689999999999864

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.02  E-value=1.1e-09  Score=105.67  Aligned_cols=100  Identities=19%  Similarity=0.150  Sum_probs=76.4

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC----CcHHHHHHhCCCCEEEEEEccCCCChHhHHHHHHHHH--
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST----THPLMDQWLGNRKRILVLNREDMISMADRNAWATYFA--  173 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~----~~~~i~~~l~~k~~IlVlNK~DLv~~~~~~~~~~~~~--  173 (316)
                      +-++||| .++.+++...+..+|++|+|+|++++...    .+..+...+..+|+++|+||+|+.+.++..+..+.+.  
T Consensus        79 iiDtPGh-~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~  157 (403)
T 3sjy_A           79 FIDAPGH-EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQF  157 (403)
T ss_dssp             EEECCCC-GGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred             EEECCCc-HHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHH
Confidence            6688999 78999999999999999999999987522    1223333445679999999999998765444333332  


Q ss_pred             --hc---CceEEEeccccccchhhhHHHHHHh
Q 021210          174 --KQ---GTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       174 --~~---g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                        ..   +.+++++||++|.|+++|.+.|.+.
T Consensus       158 l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~  189 (403)
T 3sjy_A          158 TKGTWAENVPIIPVSALHKINIDSLIEGIEEY  189 (403)
T ss_dssp             HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             HHhhCCCCCEEEEEECCCCcChHHHHHHHHHh
Confidence              21   3579999999999999999888764

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.01  E-value=8.7e-10  Score=111.71  Aligned_cols=160  Identities=15%  Similarity=0.034  Sum_probs=96.2

Q ss_pred             CCCcchhhhhhccccCCcceE--EEec-c----ccccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHH
Q 021210           71 NGSIEAYEEECDWADLDADLY--YWTK-S----LRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQ  143 (316)
Q Consensus        71 ~~~~g~~~e~e~~~~~d~~~~--~~~~-~----~~~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~  143 (316)
                      .+.|-...|++.++|++....  .|.. .    .-.+-++||| .++..++...+..+|.+|+|+|+.++..........
T Consensus        39 ~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh-~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~  117 (599)
T 3cb4_D           39 QVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGH-VDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCY  117 (599)
T ss_dssp             ------------------CEEEEEEECTTSCEEEEEEEECCCC-GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHH
T ss_pred             cccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCc-hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHH
Confidence            445556668888998886655  3331 1    1127789999 678888999999999999999999877554332221


Q ss_pred             -H-hCCCCEEEEEEccCCCChHh---HHHHHHHHHhcCc---eEEEeccccccchhhhHHHHHHhhhhhhhhhcccCCCc
Q 021210          144 -W-LGNRKRILVLNREDMISMAD---RNAWATYFAKQGT---KVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLP  215 (316)
Q Consensus       144 -~-l~~k~~IlVlNK~DLv~~~~---~~~~~~~~~~~g~---~vi~iSa~~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~  215 (316)
                       . ..+.|+++|+||+|+.+...   .+++.+.   .+.   +++++||++|.|+++|.+.+.+..+..      .+...
T Consensus       118 ~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~~---lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p------~~~~~  188 (599)
T 3cb4_D          118 TAMEMDLEVVPVLNKIDLPAADPERVAEEIEDI---VGIDATDAVRCSAKTGVGVQDVLERLVRDIPPP------EGDPE  188 (599)
T ss_dssp             HHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHH---TCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCC------CCCTT
T ss_pred             HHHHCCCCEEEeeeccCcccccHHHHHHHHHHH---hCCCcceEEEeecccCCCchhHHHHHhhcCCCc------ccccc
Confidence             1 23789999999999976321   2223222   343   489999999999999988776554321      12223


Q ss_pred             cceEEeEecc---CCCCcchhHHhhhcC
Q 021210          216 RAVRAGIVGY---PNVGKSSLINRLLKR  240 (316)
Q Consensus       216 ~~~~i~ivG~---pNvGKSTLiN~L~~~  240 (316)
                      .+++..+...   +++|+.++++-+.|.
T Consensus       189 ~p~~alI~d~~~d~~~G~v~~~rV~sG~  216 (599)
T 3cb4_D          189 GPLQALIIDSWFDNYLGVVSLIRIKNGT  216 (599)
T ss_dssp             SCCEEEEEEEEEETTTEEEEEEEEEESC
T ss_pred             CCceeeeeeccccccccEEEEEEEEeCE
Confidence            4555555555   899999998887764

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.00  E-value=4.2e-10  Score=108.77  Aligned_cols=100  Identities=20%  Similarity=0.206  Sum_probs=68.5

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC-C---CCcHHHHHHhCCCCEEEEEEccCCCChHh----HHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL-S---TTHPLMDQWLGNRKRILVLNREDMISMAD----RNAWATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~-~---~~~~~i~~~l~~k~~IlVlNK~DLv~~~~----~~~~~~~  171 (316)
                      +-++||| .++.+++...+..+|++|+|+|++++. .   ..+..+...+..+|+++|+||+|+.+..+    .++..++
T Consensus        85 iiDtPGh-~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~  163 (408)
T 1s0u_A           85 FVDSPGH-ETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEF  163 (408)
T ss_dssp             EEECSSH-HHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTTTHHHHHHHH
T ss_pred             EEECCCH-HHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHHHHHHHHHHH
Confidence            6688999 778888888899999999999999764 1   12223333445678999999999986542    2333444


Q ss_pred             HHh---cCceEEEeccccccchhhhHHHHHHh
Q 021210          172 FAK---QGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       172 ~~~---~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      +.+   .+.+++++||++|.|+++|.+.|...
T Consensus       164 l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~  195 (408)
T 1s0u_A          164 VKGTIAENAPIIPISAHHEANIDVLLKAIQDF  195 (408)
T ss_dssp             HTTSTTTTCCEEEC------CHHHHHHHHHHH
T ss_pred             HhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHh
Confidence            433   24679999999999999999888763

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.00  E-value=2.7e-10  Score=105.96  Aligned_cols=58  Identities=40%  Similarity=0.599  Sum_probs=48.2

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEE--Ee-CCcEEEEeCCCcccC
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-GKDLEFLDSPGIIPM  275 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~--~~-~~~~~liDTPGi~~~  275 (316)
                      .+|+++|.||||||||+|+|++.+...+++.|+||++....  .. +..+.|+||||+..+
T Consensus         8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~   68 (301)
T 1wf3_A            8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKP   68 (301)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccch
Confidence            46999999999999999999999888889999999985322  12 446889999999854

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.00  E-value=3.1e-10  Score=110.70  Aligned_cols=122  Identities=13%  Similarity=0.110  Sum_probs=78.7

Q ss_pred             CCCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCC-------CCCCcH-
Q 021210           70 SNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIP-------LSTTHP-  139 (316)
Q Consensus        70 ~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~-------~~~~~~-  139 (316)
                      +.+.|....|++.++|++..+..|......  +-++||| .++.+++...+..+|++|+|+|++++       ...... 
T Consensus        56 ~~~~D~~~~E~~~giTi~~~~~~~~~~~~~~~iiDtpG~-~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~  134 (435)
T 1jny_A           56 AFLLDRLKEERERGVTINLTFMRFETKKYFFTIIDAPGH-RDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTRE  134 (435)
T ss_dssp             HHHHHHHHHC-----------CEEECSSCEEEECCCSSS-TTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHH
T ss_pred             hhhhccChHHHhcCceeEeeEEEEecCCeEEEEEECCCc-HHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHH
Confidence            345677888889999999998888766554  7789999 77888899999999999999999985       222111 


Q ss_pred             --HHHHHhCCCCEEEEEEccCCCCh----Hh----HHHHHHHHHhcC-----ceEEEeccccccchhh
Q 021210          140 --LMDQWLGNRKRILVLNREDMISM----AD----RNAWATYFAKQG-----TKVIFSNGQLGMGTMK  192 (316)
Q Consensus       140 --~i~~~l~~k~~IlVlNK~DLv~~----~~----~~~~~~~~~~~g-----~~vi~iSa~~g~gi~~  192 (316)
                        .+...+..+++++|+||+|+.+.    +.    .++..+++...+     ..++++||++|.|+.+
T Consensus       135 ~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e  202 (435)
T 1jny_A          135 HIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  202 (435)
T ss_dssp             HHHHHHHTTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             HHHHHHHcCCCeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccc
Confidence              12222344678999999999872    11    223344444445     5689999999999874

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=98.99  E-value=1.5e-10  Score=117.69  Aligned_cols=128  Identities=16%  Similarity=0.150  Sum_probs=94.6

Q ss_pred             CCCCCCCCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC--------
Q 021210           65 GNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL--------  134 (316)
Q Consensus        65 ~~~~~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~--------  134 (316)
                      +.++++.+.|....|++.++|+|..+..|......  +.++||| .++.+++...+..+|++|+|+|++.+.        
T Consensus       212 ~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~~~~~iiDTPG~-e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~  290 (611)
T 3izq_1          212 SSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANFTIVDAPGH-RDFVPNAIMGISQADMAILCVDCSTNAFESGFDLD  290 (611)
T ss_dssp             SCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSSCEEEEEECCSS-SCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTT
T ss_pred             cccceeeeeccchhhhhCCeeEeeeeEEEecCCceEEEEECCCC-cccHHHHHHHHhhcCceEEEEECCCCcccccchhh
Confidence            44567777889999999999999999998887655  7789999 778888889999999999999998641        


Q ss_pred             --CCCcHHHHHHhCCCCEEEEEEccCCCCh--Hh----HHHHHHHHHhcC-----ceEEEeccccccchhhh
Q 021210          135 --STTHPLMDQWLGNRKRILVLNREDMISM--AD----RNAWATYFAKQG-----TKVIFSNGQLGMGTMKL  193 (316)
Q Consensus       135 --~~~~~~i~~~l~~k~~IlVlNK~DLv~~--~~----~~~~~~~~~~~g-----~~vi~iSa~~g~gi~~L  193 (316)
                        +..+..+...++.+++|+|+||+|+.+.  ..    .++..+++.+.|     ..++++||++|.|+.++
T Consensus       291 ~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          291 GQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             SHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             hHHHHHHHHHHHcCCCeEEEEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence              1112222233344669999999999872  11    122233344444     47899999999999854

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=98.99  E-value=6.6e-10  Score=94.70  Aligned_cols=61  Identities=33%  Similarity=0.610  Sum_probs=43.2

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCc-ccccCCCCCceeeEEEEEeCCcEEEEeCCCcccCCC
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRI  277 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~-~~~vs~~pgtT~~~~~~~~~~~~~liDTPGi~~~~~  277 (316)
                      .++|+++|.+|||||||+|+|++.. ...+++.+|+|++...+..+..+.++||||+.....
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~Dt~G~~~~~~   84 (195)
T 1svi_A           23 LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKV   84 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTTEEEEECCCBCCCSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECCcEEEEECCCCCcccc
Confidence            5789999999999999999999876 556788899999988887888899999999865443

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=98.99  E-value=1.6e-10  Score=114.24  Aligned_cols=59  Identities=31%  Similarity=0.400  Sum_probs=29.4

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEe-CCcEEEEeCCCccc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIP  274 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~-~~~~~liDTPGi~~  274 (316)
                      ..++|+++|.||||||||+|+|++.....+++.||||++...  +.+ +..+.|+||||+..
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~  293 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLRE  293 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC------
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCc
Confidence            367899999999999999999999887889999999999643  333 44689999999975

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=98.98  E-value=1.1e-09  Score=92.96  Aligned_cols=60  Identities=33%  Similarity=0.514  Sum_probs=53.1

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEeCCcEEEEeCCCcccCC
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMR  276 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~~~~~~liDTPGi~~~~  276 (316)
                      ..+|+++|.+|||||||+|+|++.....+++.+|+|++......+..+.++||||+....
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~   82 (195)
T 3pqc_A           23 KGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAK   82 (195)
T ss_dssp             TCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCcccc
Confidence            468999999999999999999998877788899999998887778889999999986543

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=98.97  E-value=6.5e-10  Score=94.45  Aligned_cols=119  Identities=15%  Similarity=-0.015  Sum_probs=70.4

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-----CCCCEEEEEEccCCCChHh-HHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMAD-RNAWATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l-----~~k~~IlVlNK~DLv~~~~-~~~~~~~  171 (316)
                      +-++||+ .++.......+..+|++|+|+|+.++.+..+  ..+..+.     .+.|+++|+||+|+.+... .++..++
T Consensus        68 i~Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~  146 (195)
T 1x3s_A           68 IWDTAGQ-ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKF  146 (195)
T ss_dssp             EEEECSS-GGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHH
T ss_pred             EEeCCCc-hhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHH
Confidence            4467887 3444556677899999999999986533211  1122222     2568899999999954321 2233444


Q ss_pred             HHhcCceEEEeccccccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcch
Q 021210          172 FAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSS  232 (316)
Q Consensus       172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKST  232 (316)
                      ....+..++.+||++|.|++++.+.+.+........             .--+.+|+||||
T Consensus       147 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~-------------~~~~~~n~gkSs  194 (195)
T 1x3s_A          147 ARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGL-------------WESENQNSGPSS  194 (195)
T ss_dssp             HHHTTCEEEECCTTTCTTHHHHHHHHHHHHHTSGGG-------------TCC---------
T ss_pred             HHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhhhhh-------------hcccccCCCCCC
Confidence            556678899999999999999888766543321111             112445999997

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=98.97  E-value=1.9e-10  Score=112.26  Aligned_cols=56  Identities=39%  Similarity=0.611  Sum_probs=35.0

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEe-CCcEEEEeCCCccc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIP  274 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~-~~~~~liDTPGi~~  274 (316)
                      +|+++|.||||||||+|+|.+.+...+++.||+|++...  +.. +..+.|+||||+..
T Consensus         3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~   61 (439)
T 1mky_A            3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFD   61 (439)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccc
Confidence            589999999999999999999887789999999998543  222 55789999999874

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=98.97  E-value=1.3e-10  Score=114.99  Aligned_cols=57  Identities=39%  Similarity=0.566  Sum_probs=49.4

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEe-CCcEEEEeCCCcc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF-GKDLEFLDSPGII  273 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~-~~~~~liDTPGi~  273 (316)
                      +++|+++|.||||||||+|+|.+.+...++++||||++..  .+.+ +..+.|+||||+.
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~  302 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVR  302 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCC
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCcc
Confidence            5789999999999999999999988788999999999853  3333 4568999999997

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=98.96  E-value=1.6e-09  Score=104.55  Aligned_cols=116  Identities=17%  Similarity=0.052  Sum_probs=84.0

Q ss_pred             CcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCC
Q 021210           73 SIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNR  148 (316)
Q Consensus        73 ~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k  148 (316)
                      .|....|++.++|++..+..|......  +-++||| .++.+.+...+..+|++|+|+|++++......+....+  .+.
T Consensus        50 ~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~-~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~i  128 (405)
T 2c78_A           50 IDKAPEERARGITINTAHVEYETAKRHYSHVDCPGH-ADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGV  128 (405)
T ss_dssp             HSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCS-GGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTC
T ss_pred             ccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCCh-HHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCC
Confidence            456667889999999988877765444  7789999 57888999999999999999999987643332222222  255


Q ss_pred             C-EEEEEEccCCCC-hHhH----HHHHHHHHhcC-----ceEEEeccccccc
Q 021210          149 K-RILVLNREDMIS-MADR----NAWATYFAKQG-----TKVIFSNGQLGMG  189 (316)
Q Consensus       149 ~-~IlVlNK~DLv~-~~~~----~~~~~~~~~~g-----~~vi~iSa~~g~g  189 (316)
                      | +++|+||+|+.+ .+..    ++..+++...+     .+++++||++|.|
T Consensus       129 p~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~  180 (405)
T 2c78_A          129 PYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE  180 (405)
T ss_dssp             CCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHH
T ss_pred             CEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhh
Confidence            6 889999999985 2211    12334444444     4689999999987

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=98.95  E-value=7.4e-10  Score=96.68  Aligned_cols=59  Identities=27%  Similarity=0.407  Sum_probs=51.0

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCc-ccccCCCCCceeeEEEEEeC----CcEEEEeCCCcccC
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFG----KDLEFLDSPGIIPM  275 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~-~~~vs~~pgtT~~~~~~~~~----~~~~liDTPGi~~~  275 (316)
                      .++|+++|.+|||||||+|+|++.. ...++..+|+|++...+...    ..+.|+||||+...
T Consensus        29 ~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~   92 (223)
T 4dhe_A           29 QPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYA   92 (223)
T ss_dssp             SCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSS
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcc
Confidence            4689999999999999999999887 46788999999998776664    57999999998654

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=98.95  E-value=6.8e-10  Score=101.67  Aligned_cols=59  Identities=31%  Similarity=0.503  Sum_probs=49.4

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe---CCcEEEEeCCCcccCC
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMR  276 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~~~~  276 (316)
                      .++|+++|.+|||||||+|+|++.. ..+++.||+|.+.....+   +..+.|+||||+....
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~-~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~   64 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLT   64 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTC-EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccc
Confidence            4689999999999999999999887 688999999988644332   5578999999997654

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=98.94  E-value=8.7e-10  Score=98.20  Aligned_cols=64  Identities=23%  Similarity=0.389  Sum_probs=42.6

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCC--CceeeEEEEE--e-CCcEEEEeCCCcccCCCCCH
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP--GVTRVLKWVR--F-GKDLEFLDSPGIIPMRISDQ  280 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~p--gtT~~~~~~~--~-~~~~~liDTPGi~~~~~~~~  280 (316)
                      ..++|+++|.+|||||||+|+|++... ..+..+  ++|++.....  . +..+.|+||||+......+.
T Consensus        28 ~~~~i~lvG~~g~GKStlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~   96 (239)
T 3lxx_A           28 SQLRIVLVGKTGAGKSATGNSILGRKV-FHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNA   96 (239)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTSCC-SCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CH
T ss_pred             CceEEEEECCCCCCHHHHHHHHcCCCc-CccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHH
Confidence            357899999999999999999998775 344444  6777754332  3 45789999999987655443

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=98.94  E-value=6.7e-10  Score=93.87  Aligned_cols=59  Identities=31%  Similarity=0.459  Sum_probs=48.1

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEeC-CcEEEEeCCCcccC
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG-KDLEFLDSPGIIPM  275 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~~-~~~~liDTPGi~~~  275 (316)
                      ..+|+++|.+|||||||+|+|.+.....+++.||+|++..  .+..+ ..+.++||||+...
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~   65 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREA   65 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccc
Confidence            4689999999999999999999887666888999998753  33443 36889999999753

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=98.93  E-value=6.9e-10  Score=103.39  Aligned_cols=60  Identities=38%  Similarity=0.607  Sum_probs=49.7

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEE--Ee--CCcEEEEeCCCcccCC
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF--GKDLEFLDSPGIIPMR  276 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~--~~--~~~~~liDTPGi~~~~  276 (316)
                      +-.|+++|.||||||||+|+|++.+...+++.|+||++....  ..  +..+.|+||||+..+.
T Consensus        10 ~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~   73 (308)
T 3iev_A           10 VGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPK   73 (308)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccc
Confidence            457999999999999999999999988899999999985432  22  3468899999998654

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=98.92  E-value=6.4e-09  Score=90.64  Aligned_cols=103  Identities=18%  Similarity=0.166  Sum_probs=73.5

Q ss_pred             cccccch---------HHHHHHHHHHHHhh---cCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChHhH
Q 021210          100 VQWYPGH---------IAKTEKELKDQLKL---MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADR  165 (316)
Q Consensus       100 i~~~Pgh---------~~~~~r~l~~~i~~---aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~~  165 (316)
                      +-++||+         ..++...+...+..   +|++++|+|++++.+..+..+..++.  +.|+++|+||+|+.+..+.
T Consensus        83 l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~  162 (223)
T 4dhe_A           83 LVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQES  162 (223)
T ss_dssp             EEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHH
T ss_pred             EEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhH
Confidence            5677885         33444444455555   88899999999877766666666654  6899999999999986553


Q ss_pred             HH----HHHHHHh-------cCceEEEeccccccchhhhHHHHHHhhh
Q 021210          166 NA----WATYFAK-------QGTKVIFSNGQLGMGTMKLSRLAKALAS  202 (316)
Q Consensus       166 ~~----~~~~~~~-------~g~~vi~iSa~~g~gi~~L~~~L~~l~~  202 (316)
                      ..    +.+.+..       .+.+++++||++|.|+++|.+.+.+...
T Consensus       163 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~  210 (223)
T 4dhe_A          163 INALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLR  210 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcC
Confidence            32    2233333       2367899999999999999988776543

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=98.92  E-value=1.4e-09  Score=104.74  Aligned_cols=127  Identities=17%  Similarity=0.080  Sum_probs=88.7

Q ss_pred             CcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCC
Q 021210           73 SIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNR  148 (316)
Q Consensus        73 ~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k  148 (316)
                      .|....|++.++|++..+..|......  +-++||| .++.+++...+..+|++|+|+|++++......+...++  .+.
T Consensus        41 ~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~-~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~v  119 (397)
T 1d2e_A           41 IDNAPEERARGITINAAHVEYSTAARHYAHTDCPGH-ADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGV  119 (397)
T ss_dssp             HHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSH-HHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTC
T ss_pred             hhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCCh-HHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence            344556778889999988877765444  7789999 67888999999999999999999987543322222222  255


Q ss_pred             C-EEEEEEccCCCC-hHhH----HHHHHHHHhcC-----ceEEEeccccccc----------hhhhHHHHHHh
Q 021210          149 K-RILVLNREDMIS-MADR----NAWATYFAKQG-----TKVIFSNGQLGMG----------TMKLSRLAKAL  200 (316)
Q Consensus       149 ~-~IlVlNK~DLv~-~~~~----~~~~~~~~~~g-----~~vi~iSa~~g~g----------i~~L~~~L~~l  200 (316)
                      | +++|+||+|+.+ .+..    ++..+++.+.+     .+++++||++|.|          +.+|.+.+.+.
T Consensus       120 p~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~  192 (397)
T 1d2e_A          120 EHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY  192 (397)
T ss_dssp             CCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred             CeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHh
Confidence            6 689999999985 2211    23334444444     4789999999764          66777666553

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=98.91  E-value=1.5e-09  Score=98.60  Aligned_cols=58  Identities=31%  Similarity=0.434  Sum_probs=47.5

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEe-CCcEEEEeCCCcccCCC
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIPMRI  277 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~-~~~~~liDTPGi~~~~~  277 (316)
                      +|+++|.||||||||+|+|++.. ..+++.||+|.+...  +.. +..+.|+||||+.....
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~~-~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~   63 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNAN-QRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVA   63 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTS-EEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC-
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC-CCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccc
Confidence            69999999999999999999876 678999999987543  333 44689999999976543

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=98.90  E-value=7.4e-11  Score=119.51  Aligned_cols=136  Identities=15%  Similarity=0.105  Sum_probs=62.7

Q ss_pred             CCCCCCCCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC-------C
Q 021210           65 GNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL-------S  135 (316)
Q Consensus        65 ~~~~~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~-------~  135 (316)
                      +.++++.+.|....|++.++|++..+..|....+.  +-++||| .++.+++...+..+|++|+|+|+..+.       .
T Consensus       222 ~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~~i~iiDTPGh-~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~  300 (592)
T 3mca_A          222 GSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIYEIGDAPGH-RDFISGMIAGASSADFAVLVVDSSQNNFERGFLEN  300 (592)
T ss_dssp             -------------------------------------CCEEESS-SEEEEECCC-------CCSEEEEEECCSSTTSCSC
T ss_pred             cchhhhhhhccchhhhcCCeeEEeeEEEEEeCCeEEEEEECCCh-HHHHHHHHHHHhhCCEEEEEEECCCCccccccccc
Confidence            34667888999999999999999999888776554  7789999 567777778889999999999998753       2


Q ss_pred             CCcH---HHHHHhCCCCEEEEEEccCCCC--hHhH----HHHHHHH-HhcCc-----eEEEeccccccchh---------
Q 021210          136 TTHP---LMDQWLGNRKRILVLNREDMIS--MADR----NAWATYF-AKQGT-----KVIFSNGQLGMGTM---------  191 (316)
Q Consensus       136 ~~~~---~i~~~l~~k~~IlVlNK~DLv~--~~~~----~~~~~~~-~~~g~-----~vi~iSa~~g~gi~---------  191 (316)
                      ....   .+...++.+++|+|+||+|+++  ....    .++.+++ ...|+     .++++||++|.|+.         
T Consensus       301 ~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~  380 (592)
T 3mca_A          301 GQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYK  380 (592)
T ss_dssp             SSHHHHHHHHHHSSCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGG
T ss_pred             hHHHHHHHHHHHcCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCccccccccccccc
Confidence            2222   2222333445999999999986  2222    2233334 33443     68999999999997         


Q ss_pred             -----hhHHHHHHhh
Q 021210          192 -----KLSRLAKALA  201 (316)
Q Consensus       192 -----~L~~~L~~l~  201 (316)
                           .|.+.|..+.
T Consensus       381 w~~g~~Lle~l~~~~  395 (592)
T 3mca_A          381 WYKGPTLLSALDQLV  395 (592)
T ss_dssp             TCCSCCHHHHHHTSC
T ss_pred             ccchHHHHHHHHhhc
Confidence                 6777766543

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=98.89  E-value=2.7e-09  Score=96.74  Aligned_cols=62  Identities=23%  Similarity=0.356  Sum_probs=49.8

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe---CCcEEEEeCCCcccCCC
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMRI  277 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~~~~~  277 (316)
                      ..++|+++|.+|||||||+|+|++.....++..+++|.......+   +..+.|+||||+.....
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~   99 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGY   99 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCccc
Confidence            357899999999999999999999887788889998887544332   44789999999976543

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=98.89  E-value=1.8e-09  Score=98.18  Aligned_cols=60  Identities=27%  Similarity=0.381  Sum_probs=50.0

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe---CCcEEEEeCCCcccCC
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMR  276 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~~~~  276 (316)
                      .++|+++|.+|+|||||+|+|++.....+++.+++|++...+.+   +..+.++||||+....
T Consensus        39 ~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~  101 (270)
T 1h65_A           39 SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGG  101 (270)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETT
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCc
Confidence            57899999999999999999999887788889999987554433   3468999999997543

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=98.88  E-value=2.7e-09  Score=96.89  Aligned_cols=64  Identities=36%  Similarity=0.497  Sum_probs=50.6

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe---CCcEEEEeCCCcccCCCCCHH
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMRISDQA  281 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~~~~~~~~~  281 (316)
                      .++|+++|.||||||||+|+|++.. ..+++.||+|.+.....+   +..+.|+||||.........+
T Consensus         5 ~~kI~lvG~~nvGKTsL~n~l~g~~-~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~   71 (258)
T 3a1s_A            5 MVKVALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSID   71 (258)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTTC-EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHH
Confidence            5789999999999999999999876 458889999988654333   346899999999765443333

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=98.87  E-value=3.3e-09  Score=97.32  Aligned_cols=60  Identities=37%  Similarity=0.462  Sum_probs=49.4

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe--CCcEEEEeCCCcccCCC
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF--GKDLEFLDSPGIIPMRI  277 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~--~~~~~liDTPGi~~~~~  277 (316)
                      .++|+++|.||||||||+|+|.+.. ..+++.||+|.+.....+  +..+.++||||......
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~-~~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~~~~   64 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHN-QRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSP   64 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCC-CCCCSSSCCCCSCEEEECTTCTTEEEEECCCCSCSSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCCcEEEEEEEEecCCeEEEEECCCcCccCC
Confidence            4689999999999999999999875 578899999988654444  45789999999976543

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=98.86  E-value=7e-10  Score=109.19  Aligned_cols=59  Identities=36%  Similarity=0.510  Sum_probs=44.6

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEe-CCcEEEEeCCCccc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF-GKDLEFLDSPGIIP  274 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~-~~~~~liDTPGi~~  274 (316)
                      ..++|+++|.||||||||+|+|++.....+++.||||++..  .+.+ +..+.|+||||+..
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~  284 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRE  284 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC------
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCcccc
Confidence            35789999999999999999999988778999999999853  2333 45789999999965

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=98.85  E-value=4.2e-09  Score=88.97  Aligned_cols=56  Identities=36%  Similarity=0.526  Sum_probs=47.9

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEeCCcEEEEeCCCcccC
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPM  275 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~~~~~~liDTPGi~~~  275 (316)
                      ++|+++|.+|||||||+|+|.+.. ..++..||+|++...+... .+.++||||+...
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~~~~   57 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKK-VRRGKRPGVTRKIIEIEWK-NHKIIDMPGFGFM   57 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCC-CSSSSSTTCTTSCEEEEET-TEEEEECCCBSCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcC-CccCCCCCccceeEEEecC-CEEEEECCCcccc
Confidence            479999999999999999999876 5677889999888777665 7999999998643

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=98.85  E-value=1.5e-09  Score=100.83  Aligned_cols=56  Identities=32%  Similarity=0.456  Sum_probs=46.4

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEe-CCcEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~-~~~~~liDTPGi~  273 (316)
                      .+|+++|.||||||||+|+|++.+...+++.|+||++...  +.. +..+.++||||+.
T Consensus         9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~   67 (301)
T 1ega_A            9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLH   67 (301)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCC
Confidence            3699999999999999999999987788999999987432  222 3468899999986

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=98.85  E-value=2.9e-09  Score=95.84  Aligned_cols=62  Identities=18%  Similarity=0.325  Sum_probs=48.6

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCC-ceeeEEE--EEe-CCcEEEEeCCCcccCCC
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-VTRVLKW--VRF-GKDLEFLDSPGIIPMRI  277 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pg-tT~~~~~--~~~-~~~~~liDTPGi~~~~~  277 (316)
                      ..++|+++|.+|||||||+|+|++.....++..|+ +|++...  +.. +..+.|+||||+.....
T Consensus        21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~   86 (260)
T 2xtp_A           21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKD   86 (260)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCC
Confidence            35789999999999999999999887666666666 7777543  222 45799999999986544

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=98.84  E-value=1.2e-08  Score=109.33  Aligned_cols=128  Identities=16%  Similarity=0.069  Sum_probs=81.5

Q ss_pred             CCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CC
Q 021210           72 GSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GN  147 (316)
Q Consensus        72 ~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~  147 (316)
                      ..|....|++.++|++..+..|......  +-++||| .++.+++...+..+|++|+|+|++++......+....+  .+
T Consensus       333 ~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGH-edF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lg  411 (1289)
T 3avx_A          333 QIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGH-ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVG  411 (1289)
T ss_dssp             ---------------CCSCEEEECSSCEEEEEECCCH-HHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHT
T ss_pred             ccccccccccCceeEEEEEEEEcCCCEEEEEEECCCh-HHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcC
Confidence            3566677889999999988888765444  7789999 77889999999999999999999987655433332222  25


Q ss_pred             CC-EEEEEEccCCCChHh-H----HHHHHHHHhcC-----ceEEEeccccc--------cchhhhHHHHHHh
Q 021210          148 RK-RILVLNREDMISMAD-R----NAWATYFAKQG-----TKVIFSNGQLG--------MGTMKLSRLAKAL  200 (316)
Q Consensus       148 k~-~IlVlNK~DLv~~~~-~----~~~~~~~~~~g-----~~vi~iSa~~g--------~gi~~L~~~L~~l  200 (316)
                      .| +|+|+||+|+.+..+ .    ++..+++.+.+     .+++++||++|        .|+.+|.+.+...
T Consensus       412 IP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~  483 (1289)
T 3avx_A          412 VPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSY  483 (1289)
T ss_dssp             CSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred             CCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhh
Confidence            56 789999999986322 1    23334444444     46899999999        4677777776653

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=98.84  E-value=4e-09  Score=96.02  Aligned_cols=64  Identities=31%  Similarity=0.431  Sum_probs=50.8

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEE--e-CCcEEEEeCCCcccCCCCCHH
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-GKDLEFLDSPGIIPMRISDQA  281 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~--~-~~~~~liDTPGi~~~~~~~~~  281 (316)
                      ..+|+++|.+|||||||+|+|++... .+++.||+|.+.....  . +..+.++||||+........+
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~   69 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSID   69 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHH
Confidence            35799999999999999999998864 8889999998864332  2 446899999999865544433

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.82  E-value=2.5e-09  Score=108.02  Aligned_cols=57  Identities=26%  Similarity=0.291  Sum_probs=41.5

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCce----eeEEEE------EeCCcEEEEeCCCcccC
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT----RVLKWV------RFGKDLEFLDSPGIIPM  275 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT----~~~~~~------~~~~~~~liDTPGi~~~  275 (316)
                      .++|+|+|.||||||||||+|++.....  +.+|+|    +.....      ..+..+.|+||||+...
T Consensus        38 ~~~VaivG~pnvGKStLiN~L~g~~~~~--~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~  104 (592)
T 1f5n_A           38 MVVVAIVGLYRTGKSYLMNKLAGKKKGF--SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV  104 (592)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTTCSSCS--CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred             CcEEEEECCCCCCHHHHHHhHcCCCCcc--ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcc
Confidence            4679999999999999999999986431  444444    443221      12457999999999854

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=98.81  E-value=5.3e-09  Score=87.34  Aligned_cols=59  Identities=31%  Similarity=0.549  Sum_probs=41.5

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEe-CCcEEEEeCCCcccCC
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF-GKDLEFLDSPGIIPMR  276 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~-~~~~~liDTPGi~~~~  276 (316)
                      ..+|+++|.+|||||||+|+|.+.. ..++..||+|++..  .+.. +..+.++||||.....
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~   64 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLT   64 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCS-SSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSS
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCC-eeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCC
Confidence            3579999999999999999999765 45677888887642  2333 4468999999987543

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=98.80  E-value=1.6e-08  Score=96.61  Aligned_cols=119  Identities=18%  Similarity=0.040  Sum_probs=85.2

Q ss_pred             hccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHH--hCCCCE-EEEEE
Q 021210           81 CDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW--LGNRKR-ILVLN  155 (316)
Q Consensus        81 e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~--l~~k~~-IlVlN  155 (316)
                      +.++|+|..+..|......  +-++||| .++.+++...++.+|++|+|+| ..+......+...+  ..+.|. ++++|
T Consensus        43 ~~giTi~~~~~~~~~~~~~i~iiDtPGh-~~f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvN  120 (370)
T 2elf_A           43 KKGTSSDITMYNNDKEGRNMVFVDAHSY-PKTLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALT  120 (370)
T ss_dssp             EEEEESSSEEEEECSSSSEEEEEECTTT-TTCHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             hCCEEEEeeEEEEecCCeEEEEEECCCh-HHHHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEE
Confidence            6788999999888766554  6789999 6788999999999999999999 66543222222222  125566 99999


Q ss_pred             -ccCCCChHhHH----HHHHHHHhcC---ceEEE--ecccc---ccchhhhHHHHHHhhh
Q 021210          156 -REDMISMADRN----AWATYFAKQG---TKVIF--SNGQL---GMGTMKLSRLAKALAS  202 (316)
Q Consensus       156 -K~DLv~~~~~~----~~~~~~~~~g---~~vi~--iSa~~---g~gi~~L~~~L~~l~~  202 (316)
                       |+|+ +....+    +..+++.+.+   .++++  +||++   +.|+++|.+.+.+..+
T Consensus       121 NK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~  179 (370)
T 2elf_A          121 RSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAE  179 (370)
T ss_dssp             CGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHH
T ss_pred             eccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhcc
Confidence             9999 654322    2233333322   57899  99999   9999999887776544

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=98.79  E-value=2.2e-08  Score=93.14  Aligned_cols=93  Identities=17%  Similarity=0.168  Sum_probs=71.4

Q ss_pred             HHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHH-HHHhC--CCCEEEEEEccCCC-ChHhHHHHHHHHHh-cC--ceEEEe
Q 021210          110 TEKELKDQLKLMDVVIEVRDARIPLSTTHPLM-DQWLG--NRKRILVLNREDMI-SMADRNAWATYFAK-QG--TKVIFS  182 (316)
Q Consensus       110 ~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i-~~~l~--~k~~IlVlNK~DLv-~~~~~~~~~~~~~~-~g--~~vi~i  182 (316)
                      +.+.....+..+|++|+|+|+..+.+..+..+ ...+.  +.|+++|+||+|+. +.....++.+.+.+ .+  ..++++
T Consensus        82 ~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~v  161 (308)
T 3iev_A           82 MVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPI  161 (308)
T ss_dssp             HHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEEC
T ss_pred             HHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEE
Confidence            44556677899999999999998776666555 55554  68999999999998 66555555555544 33  678999


Q ss_pred             ccccccchhhhHHHHHHhhh
Q 021210          183 NGQLGMGTMKLSRLAKALAS  202 (316)
Q Consensus       183 Sa~~g~gi~~L~~~L~~l~~  202 (316)
                      ||++|.|+++|.+.+.....
T Consensus       162 SA~~g~gv~~L~~~l~~~l~  181 (308)
T 3iev_A          162 SALKGANLDELVKTILKYLP  181 (308)
T ss_dssp             BTTTTBSHHHHHHHHHHHSC
T ss_pred             eCCCCCCHHHHHHHHHHhCc
Confidence            99999999999988776654

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=98.79  E-value=5e-09  Score=95.60  Aligned_cols=59  Identities=27%  Similarity=0.315  Sum_probs=39.0

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCC-------CCCceeeEEEEEe--CC---cEEEEeCCCccc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAP-------RPGVTRVLKWVRF--GK---DLEFLDSPGIIP  274 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~-------~pgtT~~~~~~~~--~~---~~~liDTPGi~~  274 (316)
                      ..++|+++|.+|+|||||+|+|++.+......       .++++.+.....+  +.   .+.|+||||+..
T Consensus         7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d   77 (274)
T 3t5d_A            7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGD   77 (274)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSC
T ss_pred             cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccc
Confidence            35789999999999999999999887655443       3445545443333  22   689999999953

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=98.79  E-value=1.8e-09  Score=104.32  Aligned_cols=56  Identities=27%  Similarity=0.351  Sum_probs=29.6

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEE----E-------------------eC----CcEEEEeCC
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV----R-------------------FG----KDLEFLDSP  270 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~----~-------------------~~----~~~~liDTP  270 (316)
                      ++|+++|.||||||||+|+|++.+ ..++++|+||++....    .                   .+    ..+.++|||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp   79 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA   79 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence            369999999999999999999887 7889999999874221    1                   01    258899999


Q ss_pred             Cccc
Q 021210          271 GIIP  274 (316)
Q Consensus       271 Gi~~  274 (316)
                      |+..
T Consensus        80 G~~~   83 (397)
T 1wxq_A           80 GLVP   83 (397)
T ss_dssp             ----
T ss_pred             Cccc
Confidence            9964

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=98.78  E-value=4e-08  Score=83.52  Aligned_cols=101  Identities=15%  Similarity=0.150  Sum_probs=70.6

Q ss_pred             cccccch---------HHHHHHHHHHHHhhc---CeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChHhH
Q 021210          100 VQWYPGH---------IAKTEKELKDQLKLM---DVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADR  165 (316)
Q Consensus       100 i~~~Pgh---------~~~~~r~l~~~i~~a---DlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~~  165 (316)
                      +-++||.         ..++...+...+..+   |++++|+|+.++.+..+..+..++.  +.|+++|+||+|+.+..+.
T Consensus        73 l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~  152 (195)
T 1svi_A           73 FVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKW  152 (195)
T ss_dssp             EEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGH
T ss_pred             EEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHH
Confidence            4567873         244444455556655   9999999999877665555555553  6899999999999876554


Q ss_pred             HHHHHH----HHh-cCceEEEeccccccchhhhHHHHHHh
Q 021210          166 NAWATY----FAK-QGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       166 ~~~~~~----~~~-~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      ....+.    +.. .+..++++||++|.|+++|.+.+.+.
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  192 (195)
T 1svi_A          153 DKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKM  192 (195)
T ss_dssp             HHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHHH
Confidence            332222    321 24678999999999999988876543

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=98.77  E-value=4.2e-09  Score=91.00  Aligned_cols=58  Identities=24%  Similarity=0.452  Sum_probs=38.7

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCc-ccccCCCCCceeeEEEEEeCCcEEEEeCCCccc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIP  274 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~-~~~vs~~pgtT~~~~~~~~~~~~~liDTPGi~~  274 (316)
                      ..+|+++|.+|+|||||+|+|.+.. ...+++.+|+|+....+..+.++.++||||+..
T Consensus        26 ~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~   84 (210)
T 1pui_A           26 GIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGY   84 (210)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC-
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcc
Confidence            4679999999999999999999876 456678899998766555555889999999853

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=98.77  E-value=1.5e-08  Score=85.74  Aligned_cols=59  Identities=31%  Similarity=0.549  Sum_probs=46.9

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEe-CCcEEEEeCCCcccCC
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIPMR  276 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~-~~~~~liDTPGi~~~~  276 (316)
                      ..+|+++|.+|||||||+|+|.+.. ..++..|++|.+...  +.. +..+.++||||.....
T Consensus         7 ~~~i~lvG~~gvGKStL~~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~   68 (188)
T 2wjg_A            7 SYEIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLT   68 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTTC-EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccc
Confidence            5789999999999999999999765 467778999887543  233 4468899999987553

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=98.75  E-value=1e-08  Score=85.31  Aligned_cols=58  Identities=19%  Similarity=0.169  Sum_probs=40.8

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEeCC---cEEEEeCCCccc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGK---DLEFLDSPGIIP  274 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~~~---~~~liDTPGi~~  274 (316)
                      .++|+++|.+|||||||+|+|.+.......+.+|+|.....+.++.   .+.++||||...
T Consensus         4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~   64 (175)
T 2nzj_A            4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEK   64 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC----
T ss_pred             EEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCc
Confidence            5789999999999999999999887666777788887665555543   478999999864

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=98.75  E-value=4.4e-09  Score=100.38  Aligned_cols=57  Identities=40%  Similarity=0.539  Sum_probs=41.4

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEeC------------------CcEEEEeCCCcccC
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG------------------KDLEFLDSPGIIPM  275 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~~------------------~~~~liDTPGi~~~  275 (316)
                      ++|+++|.||||||||+|+|++.. ..++++|+||++..  .+...                  ..+.++||||+...
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~   79 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG   79 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence            579999999999999999999877 78899999998743  22222                  35899999999753

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=98.74  E-value=2.1e-09  Score=90.46  Aligned_cols=114  Identities=15%  Similarity=-0.013  Sum_probs=69.0

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHhC--CCCEEEEEEccCCCChHh--HHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWLG--NRKRILVLNREDMISMAD--RNAWAT  170 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l~--~k~~IlVlNK~DLv~~~~--~~~~~~  170 (316)
                      +-++||+ .++.......+..+|++++|+|+.++.+...     ..+.....  +.|+++|+||+|+.+..+  .++..+
T Consensus        58 l~Dt~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~  136 (181)
T 3t5g_A           58 LVDTAGQ-DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKA  136 (181)
T ss_dssp             EEECCCC-CTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHH
T ss_pred             EEeCCCc-hhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHH
Confidence            3456766 2232223345678999999999986432211     11222222  679999999999964322  223334


Q ss_pred             HHHhcCceEEEeccccccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcch
Q 021210          171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSS  232 (316)
Q Consensus       171 ~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKST  232 (316)
                      +....+..++.+||++|.|++++.+.+.+....                  .-|..++||||
T Consensus       137 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~------------------~~~~~~~gkss  180 (181)
T 3t5g_A          137 LAESWNAAFLESSAKENQTAVDVFRRIILEAEK------------------MDGACSQGKSS  180 (181)
T ss_dssp             HHHHTTCEEEECCTTSHHHHHHHHHHHHHHHHT------------------C-----CCBSC
T ss_pred             HHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHH------------------hcCCcccCcCC
Confidence            455567889999999999999988776554322                  12567888986

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=98.74  E-value=6.5e-09  Score=88.61  Aligned_cols=101  Identities=18%  Similarity=0.090  Sum_probs=69.3

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHhC------------CCCEEEEEEccCCCChHhH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG------------NRKRILVLNREDMISMADR  165 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l~------------~k~~IlVlNK~DLv~~~~~  165 (316)
                      +-++||+ .++.......+..+|++|+|+|+.++.+..+  ..+..++.            +.|+++|+||+|+.+....
T Consensus        67 i~Dt~G~-~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~  145 (199)
T 4bas_A           67 VFDMGGA-KKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTA  145 (199)
T ss_dssp             EEEECCS-GGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCH
T ss_pred             EEECCCC-HhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCH
Confidence            5567887 4455555566889999999999987643221  22333322            6799999999999876333


Q ss_pred             HHHHHHH------HhcCceEEEeccccccchhhhHHHHHHhh
Q 021210          166 NAWATYF------AKQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (316)
Q Consensus       166 ~~~~~~~------~~~g~~vi~iSa~~g~gi~~L~~~L~~l~  201 (316)
                      +++.+.+      ...+..++.+||++|.|++++.+.|.+..
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~  187 (199)
T 4bas_A          146 AELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETA  187 (199)
T ss_dssp             HHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             HHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHH
Confidence            3332222      23456789999999999999988776543

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=98.73  E-value=6.2e-08  Score=81.90  Aligned_cols=82  Identities=27%  Similarity=0.411  Sum_probs=59.9

Q ss_pred             hhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChHhHHHHH----HHHHhcC-ceEEEeccccccchh
Q 021210          119 KLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWA----TYFAKQG-TKVIFSNGQLGMGTM  191 (316)
Q Consensus       119 ~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~~~~~~----~~~~~~g-~~vi~iSa~~g~gi~  191 (316)
                      ..+|++++|+|+..+.......+..++.  +.|+++|+||+|+.+..+.....    +.+...+ ..++++||++|.|++
T Consensus       103 ~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~  182 (195)
T 3pqc_A          103 WSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGIS  182 (195)
T ss_dssp             TTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHH
T ss_pred             cCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence            4459999999998776655555555554  68999999999998765443332    2233323 579999999999999


Q ss_pred             hhHHHHHHh
Q 021210          192 KLSRLAKAL  200 (316)
Q Consensus       192 ~L~~~L~~l  200 (316)
                      ++.+.+.+.
T Consensus       183 ~l~~~l~~~  191 (195)
T 3pqc_A          183 ELLDLISTL  191 (195)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            998877654

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=98.73  E-value=5.3e-09  Score=85.80  Aligned_cols=57  Identities=47%  Similarity=0.589  Sum_probs=37.7

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe---CCcEEEEeCCCccc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP  274 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~~  274 (316)
                      .+|+++|.+|||||||+|+|.+.....++..+++|++......   +..+.++||||...
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   61 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWS   61 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCC
Confidence            3699999999999999999998876667888899887654332   44689999999975

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=98.73  E-value=1e-08  Score=87.19  Aligned_cols=101  Identities=14%  Similarity=0.065  Sum_probs=68.3

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-------CCCCEEEEEEccCCCChHhHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-------GNRKRILVLNREDMISMADRNAWAT  170 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l-------~~k~~IlVlNK~DLv~~~~~~~~~~  170 (316)
                      +-++||+ .++.......+..+|++|+|+|+.++.+..+  ..+..++       .+.|+++|+||+|+.+....++..+
T Consensus        71 l~Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~  149 (190)
T 2h57_A           71 VFDMSGQ-GRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQ  149 (190)
T ss_dssp             EEEECCS-TTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHH
T ss_pred             EEECCCC-HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHH
Confidence            5567886 3344444567899999999999987532211  2222322       3679999999999976533334444


Q ss_pred             HHH-----hcCceEEEeccccccchhhhHHHHHHhh
Q 021210          171 YFA-----KQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (316)
Q Consensus       171 ~~~-----~~g~~vi~iSa~~g~gi~~L~~~L~~l~  201 (316)
                      .+.     ..+..++.+||++|.|+++|.+.+.+..
T Consensus       150 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  185 (190)
T 2h57_A          150 LLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQI  185 (190)
T ss_dssp             HHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             HhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence            432     2346789999999999999988776543

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=98.73  E-value=8.8e-09  Score=87.27  Aligned_cols=100  Identities=16%  Similarity=0.144  Sum_probs=70.0

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH----HHHHHh-------CCCCEEEEEEccCCCChHhHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP----LMDQWL-------GNRKRILVLNREDMISMADRNAW  168 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~----~i~~~l-------~~k~~IlVlNK~DLv~~~~~~~~  168 (316)
                      +-++||+ .++.......+..+|++|+|+|+.++....+.    .+..++       .+.|+++|.||+|+.+....++.
T Consensus        78 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~  156 (198)
T 3t1o_A           78 LYTVPGQ-VFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMV  156 (198)
T ss_dssp             EEECCSC-CSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHH
T ss_pred             EEeCCCh-HHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHH
Confidence            3456776 34445555678999999999999854222111    222332       36799999999999765444445


Q ss_pred             HHHHHhcCc-eEEEeccccccchhhhHHHHHHh
Q 021210          169 ATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       169 ~~~~~~~g~-~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      .+++...+. .++.+||++|.|++++.+.+.+.
T Consensus       157 ~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  189 (198)
T 3t1o_A          157 RAVVDPEGKFPVLEAVATEGKGVFETLKEVSRL  189 (198)
T ss_dssp             HHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHH
T ss_pred             HHHHHhcCCceEEEEecCCCcCHHHHHHHHHHH
Confidence            555666677 89999999999999988776553

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=98.71  E-value=9.9e-09  Score=90.45  Aligned_cols=58  Identities=26%  Similarity=0.375  Sum_probs=42.5

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe---CCcEEEEeCCCccc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP  274 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~~  274 (316)
                      ...+|+++|.+|||||||+|+|++... .+++.+++|++......   +..+.|+||||...
T Consensus        28 ~~~kI~vvG~~~vGKSsLin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~   88 (228)
T 2qu8_A           28 HKKTIILSGAPNVGKSSFMNIVSRANV-DVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLD   88 (228)
T ss_dssp             TSEEEEEECSTTSSHHHHHHHHTTTCE-EEECC-----CEEEEEEEETTEEEEEEECTTTTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCcceeeeeeeeecCCCeEEEEECCCCcC
Confidence            357899999999999999999998764 46778899988654332   34688999999964

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=98.71  E-value=3.2e-09  Score=97.07  Aligned_cols=35  Identities=26%  Similarity=0.383  Sum_probs=28.5

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCccc-----ccCCCCC
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMC-----PAAPRPG  250 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~-----~vs~~pg  250 (316)
                      ...+|+++|.+|||||||+|+|++....     .++..|+
T Consensus        25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~   64 (299)
T 2aka_B           25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPL   64 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCE
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccce
Confidence            3568999999999999999999988754     4455565

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=98.71  E-value=1.8e-08  Score=82.98  Aligned_cols=100  Identities=11%  Similarity=0.036  Sum_probs=67.4

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHhC-----CCCEEEEEEccCCCChHhHHHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWLG-----NRKRILVLNREDMISMADRNAWATYF  172 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l~-----~k~~IlVlNK~DLv~~~~~~~~~~~~  172 (316)
                      +-++||+ .++.......+..+|++++|+|+.++.+..  ...+..++.     +.|+++|+||+|+.+....+++.+.+
T Consensus        48 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~  126 (164)
T 1r8s_A           48 VWDVGGQ-DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKL  126 (164)
T ss_dssp             EEECCCC-GGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHT
T ss_pred             EEEcCCC-hhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHh
Confidence            4467887 445555566789999999999998763221  122333332     67999999999997653333333332


Q ss_pred             H-----hcCceEEEeccccccchhhhHHHHHHh
Q 021210          173 A-----KQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       173 ~-----~~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      .     ..+..++.+||++|.|++++.+.+.+.
T Consensus       127 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  159 (164)
T 1r8s_A          127 GLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQ  159 (164)
T ss_dssp             TGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred             CcccccCccEEEEEcccCCCcCHHHHHHHHHHH
Confidence            2     123568899999999999988876543

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=98.71  E-value=1.8e-08  Score=84.94  Aligned_cols=101  Identities=12%  Similarity=-0.000  Sum_probs=70.4

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHH---h--CCCCEEEEEEccCCCChHh--HHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQW---L--GNRKRILVLNREDMISMAD--RNAWAT  170 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~---l--~~k~~IlVlNK~DLv~~~~--~~~~~~  170 (316)
                      +-++||+ .++.......+..+|++|+|+|+.++.+..+  ..+..+   .  .+.|+++|+||+|+.+..+  .++..+
T Consensus        74 l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~  152 (195)
T 3bc1_A           74 LWDTAGL-ERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARE  152 (195)
T ss_dssp             EEEECCS-GGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             EEeCCCc-HHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHH
Confidence            4567888 4566666777899999999999987543322  111111   1  3679999999999975321  223334


Q ss_pred             HHHhcCceEEEeccccccchhhhHHHHHHhh
Q 021210          171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (316)
Q Consensus       171 ~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l~  201 (316)
                      +....+..++++||++|.|++++.+.+.+..
T Consensus       153 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~  183 (195)
T 3bc1_A          153 LAEKYGIPYFETSAANGTNISHAIEMLLDLI  183 (195)
T ss_dssp             HHHHHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHcCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            4455678899999999999999988776543

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=98.69  E-value=2.8e-08  Score=81.62  Aligned_cols=99  Identities=9%  Similarity=-0.086  Sum_probs=67.8

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHhC--CCCEEEEEEccCCCChHh--HHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWLG--NRKRILVLNREDMISMAD--RNAWAT  170 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l~--~k~~IlVlNK~DLv~~~~--~~~~~~  170 (316)
                      +-++||+ .++.......+..+|.+++|+|+.++.+...     ..+.....  +.|+++|+||+|+.+..+  .++..+
T Consensus        56 l~D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~  134 (168)
T 1u8z_A           56 ILDTAGQ-EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKN  134 (168)
T ss_dssp             EEECCC----CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred             EEECCCc-chhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHH
Confidence            5567887 4556666677899999999999986532211     11222222  689999999999975322  233444


Q ss_pred             HHHhcCceEEEeccccccchhhhHHHHHH
Q 021210          171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       171 ~~~~~g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      +....+..++++||++|.|++++.+.+.+
T Consensus       135 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  163 (168)
T 1u8z_A          135 RADQWNVNYVETSAKTRANVDKVFFDLMR  163 (168)
T ss_dssp             HHHHHTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHcCCeEEEeCCCCCCCHHHHHHHHHH
Confidence            45556788999999999999998877654

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=98.69  E-value=7.6e-09  Score=99.76  Aligned_cols=60  Identities=32%  Similarity=0.378  Sum_probs=34.0

Q ss_pred             ccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEe------------------CCcEEEEeCCCccc
Q 021210          215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF------------------GKDLEFLDSPGIIP  274 (316)
Q Consensus       215 ~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~------------------~~~~~liDTPGi~~  274 (316)
                      ..+.+|+++|.||||||||+|+|.+.+. .++++|+||.+...  +.+                  +..+.++||||+..
T Consensus        20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~   98 (396)
T 2ohf_A           20 GTSLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK   98 (396)
T ss_dssp             SSCCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence            3467899999999999999999998774 88999999987422  222                  22489999999985


Q ss_pred             C
Q 021210          275 M  275 (316)
Q Consensus       275 ~  275 (316)
                      .
T Consensus        99 ~   99 (396)
T 2ohf_A           99 G   99 (396)
T ss_dssp             -
T ss_pred             c
Confidence            4

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=98.69  E-value=4.8e-08  Score=83.13  Aligned_cols=100  Identities=7%  Similarity=-0.051  Sum_probs=69.4

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF  172 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~  172 (316)
                      +-++||+ .++.......+..+|++|+|+|+.++.+...  ..+..++     .+.|+++|+||+|+.+..+.+++.+.+
T Consensus        71 l~Dt~G~-~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~  149 (188)
T 1zd9_A           71 LWDIGGQ-PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKM  149 (188)
T ss_dssp             EEEECCS-HHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHT
T ss_pred             EEECCCC-HhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHh
Confidence            5678998 5566666777899999999999986533221  2233332     367999999999998653333333333


Q ss_pred             H-----hcCceEEEeccccccchhhhHHHHHHh
Q 021210          173 A-----KQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       173 ~-----~~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      .     ..+..++.+||++|.|+++|.+.+.+.
T Consensus       150 ~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~  182 (188)
T 1zd9_A          150 NLSAIQDREICCYSISCKEKDNIDITLQWLIQH  182 (188)
T ss_dssp             TGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred             ChhhhccCCeeEEEEECCCCCCHHHHHHHHHHH
Confidence            2     123568899999999999988876654

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.69  E-value=1.5e-08  Score=97.64  Aligned_cols=61  Identities=30%  Similarity=0.351  Sum_probs=49.5

Q ss_pred             ccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEeC------------------CcEEEEeCCCccc
Q 021210          215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG------------------KDLEFLDSPGIIP  274 (316)
Q Consensus       215 ~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~~------------------~~~~liDTPGi~~  274 (316)
                      ....+++++|.||||||||+|+|++...+.++++|+||++..  .+.+.                  ..+.++||||+..
T Consensus        18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~   97 (392)
T 1ni3_A           18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   97 (392)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence            346789999999999999999999988668999999998742  23332                  2478999999975


Q ss_pred             C
Q 021210          275 M  275 (316)
Q Consensus       275 ~  275 (316)
                      .
T Consensus        98 ~   98 (392)
T 1ni3_A           98 G   98 (392)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=98.69  E-value=1e-08  Score=84.99  Aligned_cols=100  Identities=14%  Similarity=0.043  Sum_probs=68.2

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF  172 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~  172 (316)
                      +-++||+ .++.......+..+|++++|+|+.++.+..  ...+..++     .+.|+++|+||+|+.+....+++.+.+
T Consensus        55 ~~Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~  133 (171)
T 1upt_A           55 VWDLGGL-TSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSL  133 (171)
T ss_dssp             EEEECCC-GGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHH
T ss_pred             EEECCCC-hhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHh
Confidence            4567887 334444456678999999999998764322  22333333     367999999999998654333343333


Q ss_pred             H-----hcCceEEEeccccccchhhhHHHHHHh
Q 021210          173 A-----KQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       173 ~-----~~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      .     ..+..++++||++|.|++++.+.+.+.
T Consensus       134 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  166 (171)
T 1upt_A          134 GLPALKDRKWQIFKTSATKGTGLDEAMEWLVET  166 (171)
T ss_dssp             TGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             CchhccCCceEEEECcCCCCcCHHHHHHHHHHH
Confidence            2     234578999999999999988876654

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=98.69  E-value=5.7e-08  Score=95.04  Aligned_cols=122  Identities=11%  Similarity=0.068  Sum_probs=78.7

Q ss_pred             hccccCCcceEEEecccc--ccccccch---------HHHHH-HHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--
Q 021210           81 CDWADLDADLYYWTKSLR--PVQWYPGH---------IAKTE-KELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--  146 (316)
Q Consensus        81 e~~~~~d~~~~~~~~~~~--~i~~~Pgh---------~~~~~-r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--  146 (316)
                      ..+.+.|.....+...-.  .+-++||+         .+++. ......++.+|++|+|+|+..+....+..+..++.  
T Consensus       226 ~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~  305 (456)
T 4dcu_A          226 VAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA  305 (456)
T ss_dssp             ------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT
T ss_pred             CCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHc
Confidence            344556654444433322  26678883         13332 23345789999999999999887766666665543  


Q ss_pred             CCCEEEEEEccCCCChHh--HHHHHHHHHhc-----CceEEEeccccccchhhhHHHHHHhhh
Q 021210          147 NRKRILVLNREDMISMAD--RNAWATYFAKQ-----GTKVIFSNGQLGMGTMKLSRLAKALAS  202 (316)
Q Consensus       147 ~k~~IlVlNK~DLv~~~~--~~~~~~~~~~~-----g~~vi~iSa~~g~gi~~L~~~L~~l~~  202 (316)
                      ++|+++|+||+|+.+..+  .++..+++.+.     +..++++||++|.|+++|.+.+.+...
T Consensus       306 ~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~  368 (456)
T 4dcu_A          306 GKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASE  368 (456)
T ss_dssp             TCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred             CCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHH
Confidence            789999999999986432  23333333332     367999999999999999888766543

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=98.67  E-value=1.7e-08  Score=95.46  Aligned_cols=34  Identities=26%  Similarity=0.397  Sum_probs=27.8

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCccc-----ccCCCCC
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMC-----PAAPRPG  250 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~-----~vs~~pg  250 (316)
                      ..+|+++|.+|||||||+|+|++.+..     .++..|+
T Consensus        31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~   69 (353)
T 2x2e_A           31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPL   69 (353)
T ss_dssp             CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCE
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccce
Confidence            358999999999999999999987754     4445565

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.67  E-value=2.2e-08  Score=84.98  Aligned_cols=101  Identities=10%  Similarity=0.030  Sum_probs=67.4

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF  172 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~  172 (316)
                      +-++||+ .++.......+..+|++|+|+|+.++.+..+  ..+..++     .+.|+++|+||+|+.+....++..+.+
T Consensus        64 i~Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~  142 (187)
T 1zj6_A           64 MWDIGGQ-ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFL  142 (187)
T ss_dssp             EEECCC-----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHH
T ss_pred             EEECCCC-HhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHh
Confidence            5567887 4455555677899999999999987643221  2233332     367999999999997643333333333


Q ss_pred             H-----hcCceEEEeccccccchhhhHHHHHHhh
Q 021210          173 A-----KQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (316)
Q Consensus       173 ~-----~~g~~vi~iSa~~g~gi~~L~~~L~~l~  201 (316)
                      .     ..+..++.+||++|.|++++.+.+.+..
T Consensus       143 ~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~  176 (187)
T 1zj6_A          143 KLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL  176 (187)
T ss_dssp             TGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             ChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHH
Confidence            2     2346789999999999999988776543

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=98.67  E-value=4.5e-08  Score=99.11  Aligned_cols=129  Identities=13%  Similarity=0.039  Sum_probs=78.1

Q ss_pred             CCCcchhhhhhccccCCcceE--EEec-c----ccccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHH
Q 021210           71 NGSIEAYEEECDWADLDADLY--YWTK-S----LRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQ  143 (316)
Q Consensus        71 ~~~~g~~~e~e~~~~~d~~~~--~~~~-~----~~~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~  143 (316)
                      .+.|-...|++.++|++....  .|.. .    .-.+-++||| .++..++...+..+|.+|+|+|+.++..........
T Consensus        41 ~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh-~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~  119 (600)
T 2ywe_A           41 QLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH-VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFW  119 (600)
T ss_dssp             ---------------CCCCSEEEEEECTTSCEEEEEEECCCCS-GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHH
T ss_pred             cccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc-HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHH
Confidence            445666678888998876554  3432 1    1127789999 668888888999999999999999876543322211


Q ss_pred             H--hCCCCEEEEEEccCCCChHhHHHHHHHHH-hcCc---eEEEeccccccchhhhHHHHHHhh
Q 021210          144 W--LGNRKRILVLNREDMISMADRNAWATYFA-KQGT---KVIFSNGQLGMGTMKLSRLAKALA  201 (316)
Q Consensus       144 ~--l~~k~~IlVlNK~DLv~~~~~~~~~~~~~-~~g~---~vi~iSa~~g~gi~~L~~~L~~l~  201 (316)
                      .  ..+.|+++|+||+|+.+... .+..+.+. ..+.   +++++||++|.|+++|.+.+.+..
T Consensus       120 ~a~~~~ipiIvviNKiDl~~a~~-~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~l  182 (600)
T 2ywe_A          120 KAVEQDLVIIPVINKIDLPSADV-DRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRI  182 (600)
T ss_dssp             HHHHTTCEEEEEEECTTSTTCCH-HHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHCCCCEEEEEeccCccccCH-HHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhc
Confidence            1  23789999999999975432 22223333 2343   489999999999999988766543

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=98.66  E-value=2e-08  Score=84.88  Aligned_cols=101  Identities=11%  Similarity=0.023  Sum_probs=69.9

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF  172 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~  172 (316)
                      +-++||+ .++.......+..+|++++|+|+.++.+..+  ..+..++     .+.|+++|+||+|+.+....++..+.+
T Consensus        66 ~~Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~  144 (186)
T 1ksh_A           66 IWDVGGQ-KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEAL  144 (186)
T ss_dssp             EEEECCS-HHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHT
T ss_pred             EEECCCC-HhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHh
Confidence            5568998 4555555667899999999999987643222  2233333     257999999999997654434443333


Q ss_pred             H-----hcCceEEEeccccccchhhhHHHHHHhh
Q 021210          173 A-----KQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (316)
Q Consensus       173 ~-----~~g~~vi~iSa~~g~gi~~L~~~L~~l~  201 (316)
                      .     ..+..++.+||++|.|++++.+.+.+..
T Consensus       145 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  178 (186)
T 1ksh_A          145 ELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI  178 (186)
T ss_dssp             TGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHH
Confidence            2     2346789999999999999888766543

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=98.66  E-value=2.9e-08  Score=81.91  Aligned_cols=59  Identities=24%  Similarity=0.414  Sum_probs=44.9

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcc-cccCCCCCceeeEEEEEeCC---cEEEEeCCCccc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKWVRFGK---DLEFLDSPGIIP  274 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~-~~vs~~pgtT~~~~~~~~~~---~~~liDTPGi~~  274 (316)
                      ..++|+++|.+|||||||+|+|.+... ....+.+|++.....+....   .+.++||||...
T Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~   67 (170)
T 1z0j_A            5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLER   67 (170)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchh
Confidence            357899999999999999999998763 23455667776665555542   578999999853

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=98.66  E-value=4.4e-08  Score=96.80  Aligned_cols=88  Identities=17%  Similarity=0.244  Sum_probs=66.4

Q ss_pred             HHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCEEEEEEccCCCChHhHHHHHHHHHhcCceEEEeccccccchh
Q 021210          112 KELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTM  191 (316)
Q Consensus       112 r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~~vi~iSa~~g~gi~  191 (316)
                      +.....++.+|++|+|+|+.++.+..+..+.+.+.++|+++|+||+|+.+....++..+++ ..+.+++++||++|.|++
T Consensus       315 ~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l~~~piivV~NK~DL~~~~~~~~~~~~~-~~~~~~i~iSAktg~Gi~  393 (482)
T 1xzp_A          315 ERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEKINEEEIKNKL-GTDRHMVKISALKGEGLE  393 (482)
T ss_dssp             HHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHHTTSSEEEEEEECSSCCCCCHHHHHHHH-TCSTTEEEEEGGGTCCHH
T ss_pred             HHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEECcccccccCHHHHHHHh-cCCCcEEEEECCCCCCHH
Confidence            4456788999999999999887765555666667789999999999997542223333322 233578999999999999


Q ss_pred             hhHHHHHHh
Q 021210          192 KLSRLAKAL  200 (316)
Q Consensus       192 ~L~~~L~~l  200 (316)
                      +|.+.+.+.
T Consensus       394 eL~~~l~~~  402 (482)
T 1xzp_A          394 KLEESIYRE  402 (482)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999887664

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=98.65  E-value=6.8e-08  Score=83.80  Aligned_cols=98  Identities=14%  Similarity=0.082  Sum_probs=70.1

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHH---h------CCCCEEEEEEccCCCChHh--HHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW---L------GNRKRILVLNREDMISMAD--RNAW  168 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~---l------~~k~~IlVlNK~DLv~~~~--~~~~  168 (316)
                      +-++||+ .++.......+..+|++|+|+|+.++.+..  .+..+   +      .+.|+++|+||+|+.+..+  .++.
T Consensus        88 l~Dt~G~-~~~~~~~~~~~~~~d~iilV~D~~~~~s~~--~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~  164 (217)
T 2f7s_A           88 LWDTAGQ-ERFRSLTTAFFRDAMGFLLMFDLTSQQSFL--NVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQA  164 (217)
T ss_dssp             EEEEESH-HHHHHHHHHHHTTCCEEEEEEETTCHHHHH--HHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHH
T ss_pred             EEECCCc-HhHHhHHHHHhcCCCEEEEEEECcCHHHHH--HHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHH
Confidence            5578998 567777778899999999999997653321  12222   2      3568999999999975322  2223


Q ss_pred             HHHHHhcCceEEEeccccccchhhhHHHHHHh
Q 021210          169 ATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       169 ~~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      .++....+..++.+||++|.|++++.+.+.+.
T Consensus       165 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  196 (217)
T 2f7s_A          165 RELADKYGIPYFETSAATGQNVEKAVETLLDL  196 (217)
T ss_dssp             HHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHH
T ss_pred             HHHHHHCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            33444567889999999999999998876654

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.65  E-value=2.8e-08  Score=83.14  Aligned_cols=100  Identities=9%  Similarity=0.015  Sum_probs=64.3

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--H---HHHHHh-CCCCEEEEEEccCCCChHh--HHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--P---LMDQWL-GNRKRILVLNREDMISMAD--RNAWATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~---~i~~~l-~~k~~IlVlNK~DLv~~~~--~~~~~~~  171 (316)
                      +-++||+ .++.......+..+|++|+|+|+.++.+..+  .   .+.... .+.|+++|+||+|+.+..+  .++..++
T Consensus        64 ~~Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  142 (180)
T 2g6b_A           64 MWDTAGQ-ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKL  142 (180)
T ss_dssp             EEECCCC---------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHH
T ss_pred             EEeCCCc-HHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHH
Confidence            4467887 4555556677899999999999987543221  1   111112 3679999999999985321  2223334


Q ss_pred             HHhcCceEEEeccccccchhhhHHHHHHh
Q 021210          172 FAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      ....+..++++||++|.|++++.+.+...
T Consensus       143 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  171 (180)
T 2g6b_A          143 AKEYGLPFMETSAKTGLNVDLAFTAIAKE  171 (180)
T ss_dssp             HHHHTCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            44557789999999999999988776554

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=98.64  E-value=2e-08  Score=82.91  Aligned_cols=57  Identities=26%  Similarity=0.158  Sum_probs=34.4

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEeCC--cEEEEeCCCccc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGK--DLEFLDSPGIIP  274 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~~~--~~~liDTPGi~~  274 (316)
                      ++|+++|.+|||||||+|+|.+.....+++.+|+|........+.  .+.++||||...
T Consensus         3 ~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   61 (166)
T 3q72_A            3 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG   61 (166)
T ss_dssp             CEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC----
T ss_pred             EEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCcc
Confidence            689999999999999999999887777788889888643322222  467999999754

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=98.64  E-value=3.7e-08  Score=82.55  Aligned_cols=100  Identities=9%  Similarity=-0.093  Sum_probs=70.3

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHhC--CCCEEEEEEccCCCChHh--HHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWLG--NRKRILVLNREDMISMAD--RNAWAT  170 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l~--~k~~IlVlNK~DLv~~~~--~~~~~~  170 (316)
                      +-++||+ .++.......+..+|++++|+|+.++.+...     ..+.....  +.|+++|+||+|+.+..+  .++..+
T Consensus        70 l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~  148 (187)
T 2a9k_A           70 ILDTAGQ-EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKN  148 (187)
T ss_dssp             EEECCCT-TCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred             EEECCCC-cccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHH
Confidence            5577887 3455556677899999999999986532111     12222222  679999999999975322  234445


Q ss_pred             HHHhcCceEEEeccccccchhhhHHHHHHh
Q 021210          171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       171 ~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      ++...+..++++||++|.|++++.+.+.+.
T Consensus       149 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  178 (187)
T 2a9k_A          149 RAEQWNVNYVETSAKTRANVDKVFFDLMRE  178 (187)
T ss_dssp             HHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHcCCeEEEeCCCCCCCHHHHHHHHHHH
Confidence            556667889999999999999988876554

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=98.64  E-value=3e-08  Score=81.25  Aligned_cols=97  Identities=18%  Similarity=0.113  Sum_probs=69.2

Q ss_pred             cccccchHH------HHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChHhHHHHHHH
Q 021210          100 VQWYPGHIA------KTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATY  171 (316)
Q Consensus       100 i~~~Pgh~~------~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~~~~~~~~  171 (316)
                      +-++||+..      ...+.....+..+|++++|+|+.++.+..+..+..++.  +.|+++|+||+|+.+..+  +. +.
T Consensus        53 l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~--~~-~~  129 (161)
T 2dyk_A           53 LVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHEL--YL-GP  129 (161)
T ss_dssp             EEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGGG--GC-GG
T ss_pred             EEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccchH--hH-HH
Confidence            445666632      24455567789999999999999876655555555554  789999999999976532  11 12


Q ss_pred             HHhcCc-eEEEeccccccchhhhHHHHHH
Q 021210          172 FAKQGT-KVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       172 ~~~~g~-~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      +.+.+. .++++||++|.|++++.+.+.+
T Consensus       130 ~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  158 (161)
T 2dyk_A          130 LYGLGFGDPIPTSSEHARGLEELLEAIWE  158 (161)
T ss_dssp             GGGGSSCSCEECBTTTTBSHHHHHHHHHH
T ss_pred             HHhCCCCCeEEEecccCCChHHHHHHHHH
Confidence            234565 6899999999999998877654

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=98.63  E-value=3.6e-08  Score=82.07  Aligned_cols=99  Identities=13%  Similarity=0.054  Sum_probs=69.1

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-H----HHHHh-CCCCEEEEEEccCCCChHh--HHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L----MDQWL-GNRKRILVLNREDMISMAD--RNAWATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-~----i~~~l-~~k~~IlVlNK~DLv~~~~--~~~~~~~  171 (316)
                      +-++||+ .++.......+..+|++|+|+|+.++.+..+. .    +.... .+.|+++|+||+|+.+..+  .++..++
T Consensus        68 l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  146 (179)
T 1z0f_A           68 IWDTAGQ-ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQF  146 (179)
T ss_dssp             EEECTTG-GGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred             EEECCCC-hHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHH
Confidence            4567887 45556677789999999999999875432211 1    11111 3678999999999964322  2334445


Q ss_pred             HHhcCceEEEeccccccchhhhHHHHHH
Q 021210          172 FAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      ....+..++++||++|.|++++.+.+.+
T Consensus       147 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  174 (179)
T 1z0f_A          147 AEENGLLFLEASAKTGENVEDAFLEAAK  174 (179)
T ss_dssp             HHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            5566788999999999999998876544

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=98.63  E-value=2.6e-08  Score=83.34  Aligned_cols=101  Identities=12%  Similarity=0.020  Sum_probs=69.6

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HH-HHHHh----CCCCEEEEEEccCCCChHh--HHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PL-MDQWL----GNRKRILVLNREDMISMAD--RNAWATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-~~-i~~~l----~~k~~IlVlNK~DLv~~~~--~~~~~~~  171 (316)
                      +-++||+ .++.......+..+|++|+|+|+.++.+... .. +..+.    .+.|+++|+||+|+.+..+  .++..++
T Consensus        65 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~  143 (181)
T 2efe_B           65 IWDTAGQ-ERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTY  143 (181)
T ss_dssp             EEECCCS-GGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHH
T ss_pred             EEeCCCC-hhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHH
Confidence            5567887 4455556677899999999999986543211 11 11111    2568999999999975432  2334444


Q ss_pred             HHhcCceEEEeccccccchhhhHHHHHHhh
Q 021210          172 FAKQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (316)
Q Consensus       172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~l~  201 (316)
                      ....+..++++||++|.|++++.+.+.+..
T Consensus       144 ~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~  173 (181)
T 2efe_B          144 AQENGLFFMETSAKTATNVKEIFYEIARRL  173 (181)
T ss_dssp             HHHTTCEEEECCSSSCTTHHHHHHHHHHTC
T ss_pred             HHHcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            556678899999999999999988776543

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=98.63  E-value=7.6e-08  Score=96.15  Aligned_cols=88  Identities=14%  Similarity=0.025  Sum_probs=65.7

Q ss_pred             cchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCC
Q 021210           74 IEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRK  149 (316)
Q Consensus        74 ~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~  149 (316)
                      |-...|++.+++++.....+......  +-++||| .++...+...+..+|.+|+|+|+..+.......+...+  .+.|
T Consensus        58 d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~-~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iP  136 (528)
T 3tr5_A           58 DWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGH-ADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTP  136 (528)
T ss_dssp             HHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCS-TTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCC
T ss_pred             ccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCc-hhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC
Confidence            33345667788888877766544333  7789999 66777788889999999999999987765554444443  2689


Q ss_pred             EEEEEEccCCCCh
Q 021210          150 RILVLNREDMISM  162 (316)
Q Consensus       150 ~IlVlNK~DLv~~  162 (316)
                      +++|+||+|+...
T Consensus       137 iivviNK~Dl~~~  149 (528)
T 3tr5_A          137 IMTFINKMDRDTR  149 (528)
T ss_dssp             EEEEEECTTSCCS
T ss_pred             EEEEEeCCCCccc
Confidence            9999999999743

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.63  E-value=3.2e-08  Score=85.32  Aligned_cols=101  Identities=14%  Similarity=0.011  Sum_probs=67.4

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHH---hC-CCCEEEEEEccCCCChHh-HHHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQW---LG-NRKRILVLNREDMISMAD-RNAWATYF  172 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~---l~-~k~~IlVlNK~DLv~~~~-~~~~~~~~  172 (316)
                      +-++||+ .++.......+..+|++|+|+|+.++.+..+  ..+..+   .. +.|+++|+||+|+..... .+...++.
T Consensus        73 l~Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  151 (213)
T 3cph_A           73 LWDTAGQ-ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALA  151 (213)
T ss_dssp             EECCTTG-GGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHH
T ss_pred             EEeCCCc-HHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHH
Confidence            5567887 3444455677899999999999976532211  111111   12 578999999999953321 12223334


Q ss_pred             HhcCceEEEeccccccchhhhHHHHHHhh
Q 021210          173 AKQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (316)
Q Consensus       173 ~~~g~~vi~iSa~~g~gi~~L~~~L~~l~  201 (316)
                      ...+..++++||++|.|++++.+.+....
T Consensus       152 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  180 (213)
T 3cph_A          152 KELGIPFIESSAKNDDNVNEIFFTLAKLI  180 (213)
T ss_dssp             HHHTCCEEECBTTTTBSSHHHHHHHHHHH
T ss_pred             HHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            44577899999999999999988776543

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=98.61  E-value=5e-08  Score=90.63  Aligned_cols=91  Identities=18%  Similarity=0.095  Sum_probs=66.8

Q ss_pred             HHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC----CCCEEEEEEccCCCChHh-HHHHHHHHHhcCceEEEecc
Q 021210          110 TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG----NRKRILVLNREDMISMAD-RNAWATYFAKQGTKVIFSNG  184 (316)
Q Consensus       110 ~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~----~k~~IlVlNK~DLv~~~~-~~~~~~~~~~~g~~vi~iSa  184 (316)
                      +.+.....+..+|++|+|+|+.++.+..+..+.+.+.    +.|+++|+||+|+.+... ..+..+.+ .....++++||
T Consensus        76 ~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~iSA  154 (301)
T 1wf3_A           76 MDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHEL-LPEAEPRMLSA  154 (301)
T ss_dssp             HHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHT-STTSEEEECCT
T ss_pred             HHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHHh-cCcCcEEEEeC
Confidence            4455667789999999999999877655555544443    689999999999986544 33333333 11246899999


Q ss_pred             ccccchhhhHHHHHHhh
Q 021210          185 QLGMGTMKLSRLAKALA  201 (316)
Q Consensus       185 ~~g~gi~~L~~~L~~l~  201 (316)
                      ++|.|+++|.+.+....
T Consensus       155 ~~g~gv~~l~~~l~~~l  171 (301)
T 1wf3_A          155 LDERQVAELKADLLALM  171 (301)
T ss_dssp             TCHHHHHHHHHHHHTTC
T ss_pred             CCCCCHHHHHHHHHHhc
Confidence            99999999988876654

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=98.61  E-value=3.7e-08  Score=84.46  Aligned_cols=99  Identities=13%  Similarity=0.041  Sum_probs=64.8

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHhC-----CCCEEEEEEccCCCChHhHHHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWLG-----NRKRILVLNREDMISMADRNAWATYF  172 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l~-----~k~~IlVlNK~DLv~~~~~~~~~~~~  172 (316)
                      +-++||+ .++.......+..+|++|+|+|+.++.+..  ...+..++.     +.|+++|+||+|+.+....+++.+.+
T Consensus        77 i~Dt~G~-~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~  155 (192)
T 2b6h_A           77 VWDVGGQ-DKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKL  155 (192)
T ss_dssp             EEECC------CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHT
T ss_pred             EEECCCC-HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHh
Confidence            5678988 455555567789999999999998764221  122333332     67999999999997653333443333


Q ss_pred             H-----hcCceEEEeccccccchhhhHHHHHH
Q 021210          173 A-----KQGTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       173 ~-----~~g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      .     ..+..++.+||++|.|++++.+.+.+
T Consensus       156 ~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~  187 (192)
T 2b6h_A          156 GLQHLRSRTWYVQATCATQGTGLYDGLDWLSH  187 (192)
T ss_dssp             TGGGCSSCCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred             CcccccCCceEEEECcCCCcCCHHHHHHHHHH
Confidence            2     12356899999999999998877654

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=98.61  E-value=3.2e-08  Score=91.23  Aligned_cols=26  Identities=27%  Similarity=0.447  Sum_probs=23.7

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRM  242 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~  242 (316)
                      ..+|+++|.+|+|||||+|+|++...
T Consensus        24 ~~~I~vvG~~~~GKSTlln~l~g~~~   49 (315)
T 1jwy_B           24 LPQIVVVGSQSSGKSSVLENIVGRDF   49 (315)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence            45799999999999999999998875

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=98.60  E-value=4.3e-08  Score=80.38  Aligned_cols=100  Identities=13%  Similarity=-0.074  Sum_probs=67.8

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHh--CCCCEEEEEEccCCCChHh--HHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWL--GNRKRILVLNREDMISMAD--RNAWAT  170 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l--~~k~~IlVlNK~DLv~~~~--~~~~~~  170 (316)
                      +-++||+ .++.......+..+|.+++|+|+.++.+..+     ..+....  .+.|+++|+||+|+.+..+  ..+..+
T Consensus        55 l~D~~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~  133 (167)
T 1kao_A           55 ILDTAGT-EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRA  133 (167)
T ss_dssp             EEECCCT-TCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred             EEECCCc-hhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHH
Confidence            4567887 3445555667899999999999986532211     1122222  2689999999999875422  222333


Q ss_pred             HHHhcCceEEEeccccccchhhhHHHHHHh
Q 021210          171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       171 ~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      ...+.+..++++||++|.|++++.+.+.+.
T Consensus       134 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  163 (167)
T 1kao_A          134 LAEEWGCPFMETSAKSKTMVDELFAEIVRQ  163 (167)
T ss_dssp             HHHHHTSCEEEECTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCEEEecCCCCcCHHHHHHHHHHH
Confidence            444557789999999999999988876543

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=98.59  E-value=1.5e-08  Score=85.61  Aligned_cols=98  Identities=10%  Similarity=0.039  Sum_probs=66.0

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF  172 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~  172 (316)
                      +-++||+ .++.......+..+|++|+|+|+.++.+..+  ..+..++     .+.|+++|+||+|+.+....+++.+.+
T Consensus        69 i~Dt~G~-~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~  147 (181)
T 2h17_A           69 MWDIGGQ-ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFL  147 (181)
T ss_dssp             EEEESSS-GGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHT
T ss_pred             EEECCCC-HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHh
Confidence            5567887 3444444566899999999999987643221  1233333     367899999999997643233333332


Q ss_pred             H-----hcCceEEEeccccccchhhhHHHHH
Q 021210          173 A-----KQGTKVIFSNGQLGMGTMKLSRLAK  198 (316)
Q Consensus       173 ~-----~~g~~vi~iSa~~g~gi~~L~~~L~  198 (316)
                      .     ..+..++.+||++|.|++++.+.+.
T Consensus       148 ~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~  178 (181)
T 2h17_A          148 KLTSIKDHQWHIQACCALTGEGLCQGLEWMM  178 (181)
T ss_dssp             TGGGCCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred             CcccccCCceEEEEccCCCCcCHHHHHHHHH
Confidence            1     2235789999999999999887654

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=98.59  E-value=1.5e-07  Score=91.64  Aligned_cols=122  Identities=11%  Similarity=0.058  Sum_probs=75.9

Q ss_pred             hccccCCcceEEEecccc--ccccccchH---------HHHHH-HHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--C
Q 021210           81 CDWADLDADLYYWTKSLR--PVQWYPGHI---------AKTEK-ELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--G  146 (316)
Q Consensus        81 e~~~~~d~~~~~~~~~~~--~i~~~Pgh~---------~~~~r-~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~  146 (316)
                      ..+.|.|.....+...-.  .+-++||+.         +++.. .....++.+|++|+|+|+..+.+..+..+...+  .
T Consensus       206 ~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~  285 (436)
T 2hjg_A          206 VAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA  285 (436)
T ss_dssp             --------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT
T ss_pred             CCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHc
Confidence            344555554443432222  266788872         22221 233578999999999999998776665555544  3


Q ss_pred             CCCEEEEEEccCCCChHh--HHHHHHHHH----h-cCceEEEeccccccchhhhHHHHHHhhh
Q 021210          147 NRKRILVLNREDMISMAD--RNAWATYFA----K-QGTKVIFSNGQLGMGTMKLSRLAKALAS  202 (316)
Q Consensus       147 ~k~~IlVlNK~DLv~~~~--~~~~~~~~~----~-~g~~vi~iSa~~g~gi~~L~~~L~~l~~  202 (316)
                      ++++++|+||+|+.+..+  .++..+.+.    . .+.+++++||++|.|+++|.+.+.+...
T Consensus       286 ~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~  348 (436)
T 2hjg_A          286 GKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASE  348 (436)
T ss_dssp             TCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred             CCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHH
Confidence            789999999999986433  222322222    1 1367899999999999999887766543

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=98.58  E-value=7.7e-08  Score=79.37  Aligned_cols=101  Identities=12%  Similarity=0.006  Sum_probs=67.9

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHH---HHHHh---CCCCEEEEEEccCCCChHhH--HHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPL---MDQWL---GNRKRILVLNREDMISMADR--NAWA  169 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~--~~~---i~~~l---~~k~~IlVlNK~DLv~~~~~--~~~~  169 (316)
                      +-++||+ .++.......+..+|++++|+|+.++.+..  ...   +.+..   .+.|+++|+||+|+.+..+.  .+..
T Consensus        55 ~~Dt~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~  133 (172)
T 2erx_A           55 ITDTTGS-HQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAE  133 (172)
T ss_dssp             EEECCSC-SSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHH
T ss_pred             EEECCCc-hhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHH
Confidence            4567887 344455566788999999999998653221  111   22221   26899999999999754321  1222


Q ss_pred             HHHHhcCceEEEeccccccchhhhHHHHHHhh
Q 021210          170 TYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (316)
Q Consensus       170 ~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l~  201 (316)
                      +.....+..++++||++|.|++++.+.+.+..
T Consensus       134 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  165 (172)
T 2erx_A          134 ALARTWKCAFMETSAKLNHNVKELFQELLNLE  165 (172)
T ss_dssp             HHHHHHTCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred             HHHHHhCCeEEEecCCCCcCHHHHHHHHHHHH
Confidence            33344567899999999999999988876654

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=98.58  E-value=3.1e-08  Score=81.65  Aligned_cols=100  Identities=11%  Similarity=-0.005  Sum_probs=67.6

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh----CCCCEEEEEEccCCCChHh--HHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL----GNRKRILVLNREDMISMAD--RNAWATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l----~~k~~IlVlNK~DLv~~~~--~~~~~~~  171 (316)
                      +-++||+ .++.......+..+|++++|+|+.++.+..+  ..+..+.    ...|+++|.||+|+.+..+  .++..++
T Consensus        59 ~~D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~  137 (170)
T 1r2q_A           59 IWDTAGQ-ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSY  137 (170)
T ss_dssp             EEEECCS-GGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred             EEeCCCc-HHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHH
Confidence            4467887 4455556677899999999999986532211  1111211    2567889999999965322  2333444


Q ss_pred             HHhcCceEEEeccccccchhhhHHHHHHh
Q 021210          172 FAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      ....+..++.+||++|.|+++|.+.+.+.
T Consensus       138 ~~~~~~~~~~~Sa~~g~gi~~l~~~i~~~  166 (170)
T 1r2q_A          138 ADDNSLLFMETSAKTSMNVNEIFMAIAKK  166 (170)
T ss_dssp             HHHTTCEEEECCTTTCTTHHHHHHHHHHT
T ss_pred             HHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            45567889999999999999988876543

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=98.57  E-value=4.9e-08  Score=81.21  Aligned_cols=100  Identities=15%  Similarity=0.085  Sum_probs=68.5

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHH---h-CCCCEEEEEEccCCCChHh--HHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQW---L-GNRKRILVLNREDMISMAD--RNAWATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~---l-~~k~~IlVlNK~DLv~~~~--~~~~~~~  171 (316)
                      +-++||+ .++.......+..+|++++|+|+.++.+...  ..+..+   . .+.|+++|+||+|+.+..+  .++..++
T Consensus        67 ~~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  145 (179)
T 2y8e_A           67 LWDTAGQ-ERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERK  145 (179)
T ss_dssp             EEEECCS-GGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred             EEECCCc-HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHH
Confidence            4567887 4455556677899999999999976532111  111111   1 2678999999999975432  2333444


Q ss_pred             HHhcCceEEEeccccccchhhhHHHHHHh
Q 021210          172 FAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      ....+..++.+||++|.|++++.+.+.+.
T Consensus       146 ~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~  174 (179)
T 2y8e_A          146 AKELNVMFIETSAKAGYNVKQLFRRVAAA  174 (179)
T ss_dssp             HHHHTCEEEEEBTTTTBSHHHHHHHHHHT
T ss_pred             HHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            55567889999999999999988876654

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.57  E-value=6.8e-08  Score=79.54  Aligned_cols=57  Identities=23%  Similarity=0.415  Sum_probs=41.5

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCccc-ccCCCCCceeeEEEEEeCC---cEEEEeCCCcc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~-~vs~~pgtT~~~~~~~~~~---~~~liDTPGi~  273 (316)
                      .++|+++|.+|||||||+|+|.+.... ...+..|++.....+..+.   .+.++||||..
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~   63 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE   63 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCCh
Confidence            468999999999999999999976532 2334445555555555543   57899999965

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=98.56  E-value=9.5e-08  Score=78.26  Aligned_cols=55  Identities=22%  Similarity=0.250  Sum_probs=37.7

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee--EEEEEeCC---cEEEEeCCCcc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~--~~~~~~~~---~~~liDTPGi~  273 (316)
                      .++|+++|.+|||||||+|+|.+.....  ....++.+  ...+..+.   .+.++||||..
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~   62 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTGTFIE--KYDPTIEDFYRKEIEVDSSPSVLEILDTAGTE   62 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCCTT
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCcc--cCCCCcceeEEEEEEECCEEEEEEEEECCCch
Confidence            4789999999999999999999765322  22233332  22333332   37899999965

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=98.56  E-value=2e-08  Score=83.74  Aligned_cols=102  Identities=15%  Similarity=0.058  Sum_probs=68.2

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHhCCCCEEEEEEccCCCChHh--HHHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLGNRKRILVLNREDMISMAD--RNAWATYF  172 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l~~k~~IlVlNK~DLv~~~~--~~~~~~~~  172 (316)
                      +-++||+ .++.......+..+|++|+|+|+.++.+..+.     .+.....+.|+++|+||+|+.+...  ..+..+..
T Consensus        62 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~  140 (181)
T 3tw8_B           62 IWDTAGQ-ERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFA  140 (181)
T ss_dssp             EEEETTG-GGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred             EEcCCCc-hhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHH
Confidence            4467886 33444445567899999999999875322211     1111223579999999999875432  22333444


Q ss_pred             HhcCceEEEeccccccchhhhHHHHHHhhh
Q 021210          173 AKQGTKVIFSNGQLGMGTMKLSRLAKALAS  202 (316)
Q Consensus       173 ~~~g~~vi~iSa~~g~gi~~L~~~L~~l~~  202 (316)
                      ...+..++.+||++|.|++++.+.+.+...
T Consensus       141 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  170 (181)
T 3tw8_B          141 GQMGIQLFETSAKENVNVEEMFNCITELVL  170 (181)
T ss_dssp             HHHTCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            556788999999999999999887766543

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=98.56  E-value=7e-08  Score=81.13  Aligned_cols=100  Identities=16%  Similarity=0.060  Sum_probs=67.4

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--H---HHHHHh--CCCCEEEEEEccCCCChHh--HHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--P---LMDQWL--GNRKRILVLNREDMISMAD--RNAWAT  170 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~---~i~~~l--~~k~~IlVlNK~DLv~~~~--~~~~~~  170 (316)
                      +-++||+ .++.......+..+|++++|+|+.++.+..+  .   .+....  .+.|+++|+||+|+.+..+  .++..+
T Consensus        70 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~  148 (183)
T 3kkq_A           70 VLDTAGQ-EEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKE  148 (183)
T ss_dssp             EEECCSC-GGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHH
T ss_pred             EEECCCc-hhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHH
Confidence            3567887 4455555677889999999999987532211  1   122222  2679999999999975321  222333


Q ss_pred             HHHhcCceEEEeccc-cccchhhhHHHHHHh
Q 021210          171 YFAKQGTKVIFSNGQ-LGMGTMKLSRLAKAL  200 (316)
Q Consensus       171 ~~~~~g~~vi~iSa~-~g~gi~~L~~~L~~l  200 (316)
                      .....+..++.+||+ +|.|++++.+.+.+.
T Consensus       149 ~~~~~~~~~~~~Sa~~~~~~v~~l~~~l~~~  179 (183)
T 3kkq_A          149 MATKYNIPYIETSAKDPPLNVDKTFHDLVRV  179 (183)
T ss_dssp             HHHHHTCCEEEEBCSSSCBSHHHHHHHHHHH
T ss_pred             HHHHhCCeEEEeccCCCCCCHHHHHHHHHHH
Confidence            444556789999999 999999988776543

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=98.55  E-value=9.5e-08  Score=81.63  Aligned_cols=99  Identities=11%  Similarity=0.074  Sum_probs=67.4

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHh-CCCCEEEEEEccCCCChHh--HHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL-GNRKRILVLNREDMISMAD--RNAWATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l-~~k~~IlVlNK~DLv~~~~--~~~~~~~  171 (316)
                      +-++||+ .++.......+..+|++|+|+|+.++.+..+.     .+.... .+.|+++|+||+|+.+..+  .++..++
T Consensus        79 l~Dt~G~-~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~  157 (192)
T 2il1_A           79 IWDTAGQ-ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKF  157 (192)
T ss_dssp             EEEECCS-GGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred             EEeCCCc-HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHH
Confidence            4577887 45666667788999999999999875433221     111111 2678999999999975322  1222233


Q ss_pred             HHhc-CceEEEeccccccchhhhHHHHHH
Q 021210          172 FAKQ-GTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       172 ~~~~-g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      .... +..++.+||++|.|++++.+.+.+
T Consensus       158 ~~~~~~~~~~~~SA~~g~gi~~l~~~l~~  186 (192)
T 2il1_A          158 AQQITGMRFCEASAKDNFNVDEIFLKLVD  186 (192)
T ss_dssp             HHTSTTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred             HHhcCCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            3332 578899999999999998877654

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=98.55  E-value=7e-08  Score=81.67  Aligned_cols=100  Identities=15%  Similarity=0.062  Sum_probs=68.4

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh--CCCCEEEEEEccCCCChH-hHHHHHHHHHh
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL--GNRKRILVLNREDMISMA-DRNAWATYFAK  174 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~~~l--~~k~~IlVlNK~DLv~~~-~~~~~~~~~~~  174 (316)
                      +-++||+ .++.......+..+|++|+|+|+.++.+..+.  .+..+.  ...|+++|+||+|+.... ..++..+++.+
T Consensus        97 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~  175 (208)
T 3clv_A           97 IWDTAGQ-ERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDKNKFQVDILEVQKYAQD  175 (208)
T ss_dssp             EEECTTG-GGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTCC-CCSCHHHHHHHHHH
T ss_pred             EEECCCc-HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCcccccCCHHHHHHHHHH
Confidence            4456887 44555666788999999999999876432221  111121  258999999999942211 23445555666


Q ss_pred             cCceEEEeccccccchhhhHHHHHHh
Q 021210          175 QGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       175 ~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      .+..++++||++|.|++++.+.+...
T Consensus       176 ~~~~~~~~Sa~~~~~i~~l~~~l~~~  201 (208)
T 3clv_A          176 NNLLFIQTSAKTGTNIKNIFYMLAEE  201 (208)
T ss_dssp             TTCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred             cCCcEEEEecCCCCCHHHHHHHHHHH
Confidence            77889999999999999988876554

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.54  E-value=2.4e-08  Score=83.93  Aligned_cols=101  Identities=12%  Similarity=0.013  Sum_probs=65.0

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF  172 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~  172 (316)
                      +-++||+ .++.......+..+|++++|+|+.++.+..+  ..+..++     .+.|+++|+||+|+.+....+++.+.+
T Consensus        66 i~Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~  144 (183)
T 1moz_A           66 VWDLGGQ-TSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKEL  144 (183)
T ss_dssp             EEEEC-----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHT
T ss_pred             EEECCCC-HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHh
Confidence            4567777 3343444566789999999999987643221  2233333     357999999999997643333343333


Q ss_pred             Hh-----cCceEEEeccccccchhhhHHHHHHhh
Q 021210          173 AK-----QGTKVIFSNGQLGMGTMKLSRLAKALA  201 (316)
Q Consensus       173 ~~-----~g~~vi~iSa~~g~gi~~L~~~L~~l~  201 (316)
                      ..     .+..++.+||++|.|++++.+.+.+..
T Consensus       145 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  178 (183)
T 1moz_A          145 NLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI  178 (183)
T ss_dssp             TTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHH
T ss_pred             CcccccCCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence            21     234689999999999999988776543

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=98.54  E-value=1.3e-07  Score=80.14  Aligned_cols=100  Identities=14%  Similarity=0.081  Sum_probs=67.7

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF  172 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~  172 (316)
                      +-++||+ .++.......+..+|++++|+|+.++.+..+  ..+..++     .+.|+++|.||+|+.+....++..+.+
T Consensus        64 i~Dt~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~  142 (181)
T 1fzq_A           64 VWDIGGQ-RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGL  142 (181)
T ss_dssp             EEECSSC-GGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHT
T ss_pred             EEECCCC-HHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHh
Confidence            4567887 4455555677899999999999986533221  2233333     257999999999997653333333332


Q ss_pred             H-----hcCceEEEeccccccchhhhHHHHHHh
Q 021210          173 A-----KQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       173 ~-----~~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      .     ..+..++.+||++|.|++++.+.+.+.
T Consensus       143 ~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  175 (181)
T 1fzq_A          143 NLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKN  175 (181)
T ss_dssp             TGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred             CchhccCCceEEEEccCCCCCCHHHHHHHHHHH
Confidence            1     123568899999999999988876554

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=98.54  E-value=9.4e-08  Score=98.47  Aligned_cols=35  Identities=26%  Similarity=0.440  Sum_probs=32.7

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGV  251 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgt  251 (316)
                      .++|+|+|.+|+|||||+|+|++.....++..|+|
T Consensus        69 ~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T  103 (695)
T 2j69_A           69 VFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCT  103 (695)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCc
Confidence            57899999999999999999999988888888888

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=98.54  E-value=4.5e-08  Score=80.59  Aligned_cols=99  Identities=9%  Similarity=-0.003  Sum_probs=67.7

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HH---HHHHhCCCCEEEEEEccCCCChHh--HHHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PL---MDQWLGNRKRILVLNREDMISMAD--RNAWATYF  172 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~---i~~~l~~k~~IlVlNK~DLv~~~~--~~~~~~~~  172 (316)
                      +-++||+ .++.......+..+|++++|+|+.++.+..+  ..   +.....+.|+++|+||+|+.+..+  .++..+..
T Consensus        58 l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~  136 (168)
T 1z2a_A           58 LWDTAGQ-EEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLA  136 (168)
T ss_dssp             EECCTTG-GGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHH
T ss_pred             EEcCCCc-HhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHH
Confidence            4467887 3344445667889999999999987542211  11   112224789999999999975322  23333444


Q ss_pred             HhcCceEEEeccccccchhhhHHHHHH
Q 021210          173 AKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       173 ~~~g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      ...+..++++||++|.|++++.+.+.+
T Consensus       137 ~~~~~~~~~~Sa~~~~~i~~l~~~l~~  163 (168)
T 1z2a_A          137 KRLKLRFYRTSVKEDLNVSEVFKYLAE  163 (168)
T ss_dssp             HHHTCEEEECBTTTTBSSHHHHHHHHH
T ss_pred             HHcCCeEEEEecCCCCCHHHHHHHHHH
Confidence            556788999999999999998877654

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=98.54  E-value=4.6e-08  Score=83.11  Aligned_cols=82  Identities=20%  Similarity=0.173  Sum_probs=47.1

Q ss_pred             cccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccc--cCCCCCceeeEEEEEeCCc
Q 021210          186 LGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCP--AAPRPGVTRVLKWVRFGKD  263 (316)
Q Consensus       186 ~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~--vs~~pgtT~~~~~~~~~~~  263 (316)
                      ....+..+.+.+.++......     +.....++|+++|.+|||||||+|+|.+.....  ++..|++|.+.    ....
T Consensus        22 ~~~~~~~l~~~l~~~~~~~~~-----~~~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~----~~~~   92 (193)
T 2ged_A           22 NKRKISQWREWIDEKLGGGSG-----GGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----DGSG   92 (193)
T ss_dssp             TTTBCHHHHHHHHHHC-------------CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC----CCTT
T ss_pred             HHHHHHHHHHHHHHHHHhhcC-----CCCCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee----cCCe
Confidence            344566666666555433221     112345789999999999999999999865322  23445555543    3456


Q ss_pred             EEEEeCCCcccCC
Q 021210          264 LEFLDSPGIIPMR  276 (316)
Q Consensus       264 ~~liDTPGi~~~~  276 (316)
                      +.++||||.....
T Consensus        93 ~~l~Dt~G~~~~~  105 (193)
T 2ged_A           93 VTLVDFPGHVKLR  105 (193)
T ss_dssp             CSEEEETTCCBSS
T ss_pred             EEEEECCCCchHH
Confidence            8899999997543

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.54  E-value=1.2e-07  Score=79.26  Aligned_cols=58  Identities=21%  Similarity=0.251  Sum_probs=42.5

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEeCC---cEEEEeCCCcc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~~~---~~~liDTPGi~  273 (316)
                      ..++|+++|.+|||||||+|+|.+.........|.++.+..  .+..+.   .+.++||||..
T Consensus         9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~   71 (180)
T 2g6b_A            9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE   71 (180)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC-
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcH
Confidence            46799999999999999999999876544445565555543  233433   57899999964

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=98.54  E-value=1.2e-07  Score=80.97  Aligned_cols=100  Identities=9%  Similarity=-0.093  Sum_probs=69.5

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHhC--CCCEEEEEEccCCCChHh--HHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWLG--NRKRILVLNREDMISMAD--RNAWAT  170 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l~--~k~~IlVlNK~DLv~~~~--~~~~~~  170 (316)
                      +-++||+ .++.......+..+|++++|+|+.++.+...     ..+.....  +.|+++|+||+|+.+..+  .++..+
T Consensus        66 l~Dt~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~  144 (206)
T 2bov_A           66 ILDTAGQ-EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKN  144 (206)
T ss_dssp             EEECCCT-TCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             EEcCCCh-hhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHH
Confidence            4567887 4455556677899999999999986532211     11222222  679999999999975322  233444


Q ss_pred             HHHhcCceEEEeccccccchhhhHHHHHHh
Q 021210          171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       171 ~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      +....+..++++||++|.|++++.+.+...
T Consensus       145 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  174 (206)
T 2bov_A          145 RAEQWNVNYVETSAKTRANVDKVFFDLMRE  174 (206)
T ss_dssp             HHHHHTCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred             HHHHhCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            455567889999999999999988776554

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=98.53  E-value=7.6e-08  Score=79.36  Aligned_cols=100  Identities=9%  Similarity=-0.067  Sum_probs=67.4

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh-----CCCCEEEEEEccCCCChHh--HHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLMDQWL-----GNRKRILVLNREDMISMAD--RNAWATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-~~i~~~l-----~~k~~IlVlNK~DLv~~~~--~~~~~~~  171 (316)
                      +-++||+ .++.......+..+|++++|+|+.++.+..+ ..+...+     ...|+++|.||+|+.+..+  .+...++
T Consensus        59 ~~Dt~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~  137 (170)
T 1z0j_A           59 IWDTAGL-ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDY  137 (170)
T ss_dssp             EEEECCS-GGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred             EEcCCCc-hhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHH
Confidence            4567887 4455556677899999999999987543222 1111111     2567899999999975432  1222333


Q ss_pred             HHhcCceEEEeccccccchhhhHHHHHHh
Q 021210          172 FAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      ....+..++++||++|.|+++|.+.+.+.
T Consensus       138 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~  166 (170)
T 1z0j_A          138 ADSIHAIFVETSAKNAININELFIEISRR  166 (170)
T ss_dssp             HHHTTCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             HHHcCCEEEEEeCCCCcCHHHHHHHHHHH
Confidence            44567889999999999999988876543

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=98.53  E-value=9.4e-08  Score=78.58  Aligned_cols=99  Identities=9%  Similarity=-0.094  Sum_probs=65.2

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--H---HHHHHh--CCCCEEEEEEccCCCChHh--HHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--P---LMDQWL--GNRKRILVLNREDMISMAD--RNAWAT  170 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~---~i~~~l--~~k~~IlVlNK~DLv~~~~--~~~~~~  170 (316)
                      +-++||+ .++.......+..+|++++|+|+.++.+..+  .   .+....  .+.|+++|+||+|+.+..+  .++..+
T Consensus        55 l~D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~  133 (167)
T 1c1y_A           55 ILDTAGT-EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQN  133 (167)
T ss_dssp             EEEECSS-CSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             EEECCCh-HHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHH
Confidence            3456776 3344445567889999999999986532111  1   122222  2689999999999975322  122333


Q ss_pred             HHHhc-CceEEEeccccccchhhhHHHHHH
Q 021210          171 YFAKQ-GTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       171 ~~~~~-g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      +.... +..++++||++|.|++++.+.+.+
T Consensus       134 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  163 (167)
T 1c1y_A          134 LARQWCNCAFLESSAKSKINVNEIFYDLVR  163 (167)
T ss_dssp             HHHHTTSCEEEECBTTTTBSHHHHHHHHHH
T ss_pred             HHHHccCCcEEEecCCCCCCHHHHHHHHHH
Confidence            33444 578999999999999998887654

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=98.53  E-value=8.8e-08  Score=81.74  Aligned_cols=58  Identities=26%  Similarity=0.434  Sum_probs=45.4

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcc-cccCCCCCceeeEEEEEeCC---cEEEEeCCCcc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~-~~vs~~pgtT~~~~~~~~~~---~~~liDTPGi~  273 (316)
                      ..++|+++|.+|||||||+|+|.+... ....+.+|+|.....+..+.   .+.++||||..
T Consensus        22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~   83 (192)
T 2fg5_A           22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE   83 (192)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSG
T ss_pred             CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCch
Confidence            357899999999999999999997763 24566778877766555532   57899999964

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=98.52  E-value=3.1e-08  Score=82.64  Aligned_cols=57  Identities=26%  Similarity=0.455  Sum_probs=42.5

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEe-CCcEEEEeCCCcc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF-GKDLEFLDSPGII  273 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~-~~~~~liDTPGi~  273 (316)
                      ...+|+++|.+|||||||+|+|.+.. ......|++|.+..  .+.. +..+.++||||..
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   66 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRHSK-VTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHE   66 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHTTC-SSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCc-cccCCCCceeEeeeEEEEEeCCceEEEEECCCCH
Confidence            45789999999999999999999765 34455666665542  2233 4568899999974

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=98.52  E-value=5.9e-08  Score=90.10  Aligned_cols=58  Identities=19%  Similarity=0.200  Sum_probs=46.5

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe----CCcEEEEeCCCccc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF----GKDLEFLDSPGIIP  274 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~----~~~~~liDTPGi~~  274 (316)
                      ..||+++|.+|||||||+|+|++.....+++.+|+|.+.....+    +..+.++||||...
T Consensus         3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~   64 (307)
T 3r7w_A            3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDV   64 (307)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHH
Confidence            46899999999999999999998765667778999988654332    23578999999753

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.52  E-value=6.6e-08  Score=79.61  Aligned_cols=99  Identities=12%  Similarity=0.039  Sum_probs=66.6

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----CCCCEEEEEEccCCCCh---Hh--HHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISM---AD--RNAW  168 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~~~l----~~k~~IlVlNK~DLv~~---~~--~~~~  168 (316)
                      +-++||+ .++.......+..+|++++|+|+.++.+..+.  .+..+.    .+.|+++|+||+|+.+.   .+  .+..
T Consensus        56 ~~D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~  134 (170)
T 1ek0_A           56 IWDTAGQ-ERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEG  134 (170)
T ss_dssp             EEEECCS-GGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHH
T ss_pred             EEECCCC-hhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHH
Confidence            4567887 34555566778999999999999875332211  111111    26789999999999753   11  1222


Q ss_pred             HHHHHhcCceEEEeccccccchhhhHHHHHH
Q 021210          169 ATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       169 ~~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      .+.....+..++++||++|.|++++.+.+.+
T Consensus       135 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  165 (170)
T 1ek0_A          135 EKLAEEKGLLFFETSAKTGENVNDVFLGIGE  165 (170)
T ss_dssp             HHHHHHHTCEEEECCTTTCTTHHHHHHHHHT
T ss_pred             HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            2334455788999999999999998877654

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=98.52  E-value=3.5e-08  Score=82.62  Aligned_cols=99  Identities=11%  Similarity=-0.068  Sum_probs=64.2

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH------HHHHHhCCCCEEEEEEccCCCChHhH--------
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP------LMDQWLGNRKRILVLNREDMISMADR--------  165 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~------~i~~~l~~k~~IlVlNK~DLv~~~~~--------  165 (316)
                      +-++||+ .++.......+..+|++++|+|+.++.+..+.      .+.....+.|+++|+||+|+.+..+.        
T Consensus        60 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  138 (182)
T 3bwd_D           60 LWDTAGQ-EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAV  138 (182)
T ss_dssp             EECCCC--CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CC
T ss_pred             EEECCCC-hhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCC
Confidence            4456776 33333444567889999999999765432211      12222236899999999998654321        


Q ss_pred             ----HHHHHHHHhcCc-eEEEeccccccchhhhHHHHHH
Q 021210          166 ----NAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       166 ----~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                          ++..++....+. .++.+||++|.|++++.+.+.+
T Consensus       139 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  177 (182)
T 3bwd_D          139 PITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIR  177 (182)
T ss_dssp             CCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHH
Confidence                222333344564 7899999999999998877654

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=98.52  E-value=1.1e-07  Score=78.26  Aligned_cols=59  Identities=24%  Similarity=0.318  Sum_probs=42.4

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccc-cCCCCCceeeEEEEEeCC---cEEEEeCCCccc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGIIP  274 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~-vs~~pgtT~~~~~~~~~~---~~~liDTPGi~~  274 (316)
                      ..++|+++|.+|||||||+|+|.+..... ..+..|++.....+..+.   .+.++||||...
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~   67 (170)
T 1r2q_A            5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER   67 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHH
Confidence            35789999999999999999999765332 234445555555455433   578999999753

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=98.52  E-value=2.8e-08  Score=95.00  Aligned_cols=57  Identities=39%  Similarity=0.498  Sum_probs=44.9

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEE----------------------eCCcEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVR----------------------FGKDLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~----------------------~~~~~~liDTPGi~  273 (316)
                      ++|+++|.||||||||+|+|++.. ..++++|++|.+.  ....                      .+..+.++||||+.
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~   80 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV   80 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence            468999999999999999999875 5788899988763  1221                      23468999999998


Q ss_pred             cC
Q 021210          274 PM  275 (316)
Q Consensus       274 ~~  275 (316)
                      ..
T Consensus        81 ~~   82 (368)
T 2dby_A           81 KG   82 (368)
T ss_dssp             CC
T ss_pred             cc
Confidence            54

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=98.52  E-value=6.4e-08  Score=82.62  Aligned_cols=101  Identities=12%  Similarity=-0.021  Sum_probs=69.8

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-HHHHHh-----CCCCEEEEEEccCCCChHh--HHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQWL-----GNRKRILVLNREDMISMAD--RNAWATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-~i~~~l-----~~k~~IlVlNK~DLv~~~~--~~~~~~~  171 (316)
                      +-++||+ .++.......+..+|++|+|+|+.++.+.... .+...+     .+.|+++|+||+|+.+..+  .++..++
T Consensus        76 i~Dt~G~-~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~  154 (192)
T 2fg5_A           76 IWDTAGQ-ERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEY  154 (192)
T ss_dssp             EEEECCS-GGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred             EEcCCCc-hhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHH
Confidence            4567887 44555566778999999999999875432111 111111     2678999999999974321  2344455


Q ss_pred             HHhcCceEEEeccccccchhhhHHHHHHhh
Q 021210          172 FAKQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (316)
Q Consensus       172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~l~  201 (316)
                      ..+.+..++++||++|.|+++|.+.+.+..
T Consensus       155 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  184 (192)
T 2fg5_A          155 AESIGAIVVETSAKNAINIEELFQGISRQI  184 (192)
T ss_dssp             HHTTTCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred             HHHcCCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence            556678899999999999999988776543

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=98.52  E-value=1.9e-07  Score=78.39  Aligned_cols=101  Identities=11%  Similarity=-0.037  Sum_probs=66.8

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHh--CCCCEEEEEEccCCCChHhH-HHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWL--GNRKRILVLNREDMISMADR-NAWATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l--~~k~~IlVlNK~DLv~~~~~-~~~~~~  171 (316)
                      +-++||+ .++.......+..+|++++|+|+.++.+...     ..+....  .+.|+++|+||+|+.+.... +...+.
T Consensus        56 i~Dt~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~  134 (189)
T 4dsu_A           56 ILDTAGQ-EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDL  134 (189)
T ss_dssp             EEECCCC----CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHH
T ss_pred             EEECCCc-HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHH
Confidence            3567887 4555556677899999999999986532211     1112222  26799999999999754322 222333


Q ss_pred             HHhcCceEEEeccccccchhhhHHHHHHhh
Q 021210          172 FAKQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (316)
Q Consensus       172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~l~  201 (316)
                      ....+..++++||++|.|++++.+.+.+..
T Consensus       135 ~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~  164 (189)
T 4dsu_A          135 ARSYGIPFIETSAKTRQGVDDAFYTLVREI  164 (189)
T ss_dssp             HHHHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            345567899999999999999887766543

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=98.51  E-value=7.7e-08  Score=79.56  Aligned_cols=56  Identities=23%  Similarity=0.412  Sum_probs=39.1

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCcc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII  273 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~  273 (316)
                      ..++|+++|.+|||||||+|+|.+.......+..|.+.  ..+.. +..+.++||||..
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~Dt~G~~   62 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNV--ETVTYKNLKFQVWDLGGLT   62 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEE--EEEEETTEEEEEEEECCCG
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccce--EEEEECCEEEEEEECCCCh
Confidence            45789999999999999999998766433333223222  22223 4468899999974

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=98.51  E-value=1.7e-07  Score=80.79  Aligned_cols=100  Identities=9%  Similarity=-0.010  Sum_probs=69.1

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHH---h-CCCCEEEEEEccCCCChHh--HHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQW---L-GNRKRILVLNREDMISMAD--RNAWATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~---l-~~k~~IlVlNK~DLv~~~~--~~~~~~~  171 (316)
                      +-++||+ .++.......+..+|++|+|+|+.++.+..+  ..+..+   . .+.|+++|+||+|+.+..+  .++..++
T Consensus        82 i~Dt~G~-~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~  160 (201)
T 2hup_A           82 IWDTAGQ-ERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSL  160 (201)
T ss_dssp             EECCTTC-GGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred             EEECCCc-HhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHH
Confidence            5578888 4566666778899999999999876533211  111111   1 3578999999999975321  2233444


Q ss_pred             HHhcCc-eEEEeccccccchhhhHHHHHHh
Q 021210          172 FAKQGT-KVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       172 ~~~~g~-~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      ....+. .++.+||++|.|++++.+.+.+.
T Consensus       161 ~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~  190 (201)
T 2hup_A          161 AEHYDILCAIETSAKDSSNVEEAFLRVATE  190 (201)
T ss_dssp             HHHTTCSEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             HHHcCCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            555677 88999999999999988776554

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=98.51  E-value=9.3e-08  Score=81.11  Aligned_cols=100  Identities=13%  Similarity=0.069  Sum_probs=68.6

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HH---HHHHhC-CCCEEEEEEccCCCChHhH--HHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PL---MDQWLG-NRKRILVLNREDMISMADR--NAWATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~---i~~~l~-~k~~IlVlNK~DLv~~~~~--~~~~~~  171 (316)
                      +-++||+ .++.......+..+|++|+|+|+.++.+...  ..   +..... +.|+++|+||+|+.+....  ....++
T Consensus        69 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~  147 (196)
T 3tkl_A           69 IWDTAGQ-ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEF  147 (196)
T ss_dssp             EEEECCS-GGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHH
T ss_pred             EEECCCc-HhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHH
Confidence            4477887 4555566678899999999999987532211  11   111112 5789999999999765321  223334


Q ss_pred             HHhcCceEEEeccccccchhhhHHHHHHh
Q 021210          172 FAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      ....+..++.+||++|.|++++.+.+.+.
T Consensus       148 ~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  176 (196)
T 3tkl_A          148 ADSLGIPFLETSAKNATNVEQSFMTMAAE  176 (196)
T ss_dssp             HHHTTCCEEEECTTTCTTHHHHHHHHHHH
T ss_pred             HHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Confidence            45567889999999999999988776554

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=98.51  E-value=1.4e-07  Score=93.09  Aligned_cols=99  Identities=18%  Similarity=0.086  Sum_probs=64.9

Q ss_pred             cccccchHHHHHH--------HHHHHHhhcCeEEEEEeCCCCCCC----CcHHHHHHhCCCCEEEEEEccCCCChHhHHH
Q 021210          100 VQWYPGHIAKTEK--------ELKDQLKLMDVVIEVRDARIPLST----THPLMDQWLGNRKRILVLNREDMISMADRNA  167 (316)
Q Consensus       100 i~~~Pgh~~~~~r--------~l~~~i~~aDlIl~VvDar~~~~~----~~~~i~~~l~~k~~IlVlNK~DLv~~~~~~~  167 (316)
                      +-++||+. ++..        .....+..+|++|+|+|+.++.+.    ....+...+.++|+++|+||+|+.+......
T Consensus       285 liDT~G~~-~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~piIvV~NK~Dl~~~~~~~~  363 (476)
T 3gee_A          285 LTDTAGLR-EAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAANADALI  363 (476)
T ss_dssp             EEC---------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSEEEEEEECTTSCTTTHHHH
T ss_pred             EEECCCCC-cchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcCCCCEEEEEECcCCCCccchhH
Confidence            56778873 2322        223457899999999999988765    3444555566889999999999987654322


Q ss_pred             HHHHHHhc-CceEEEeccccccchhhhHHHHHHhh
Q 021210          168 WATYFAKQ-GTKVIFSNGQLGMGTMKLSRLAKALA  201 (316)
Q Consensus       168 ~~~~~~~~-g~~vi~iSa~~g~gi~~L~~~L~~l~  201 (316)
                        +.+.+. ..+++++||++|.|+++|.+.+.+..
T Consensus       364 --~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~  396 (476)
T 3gee_A          364 --RAIADGTGTEVIGISALNGDGIDTLKQHMGDLV  396 (476)
T ss_dssp             --HHHHHHHTSCEEECBTTTTBSHHHHHHHHTHHH
T ss_pred             --HHHHhcCCCceEEEEECCCCCHHHHHHHHHHHH
Confidence              223332 35789999999999999988776543

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=98.51  E-value=3.3e-08  Score=82.52  Aligned_cols=101  Identities=16%  Similarity=0.064  Sum_probs=64.8

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCEEEEEEccCCCChHhHHHHHHHHHhc--
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATYFAKQ--  175 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~--  175 (316)
                      +-++||+ .++.......+..+|++|+|+|+.++...........+  .+.|+++|+||+|+.+... ++..+.+...  
T Consensus        59 l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~-~~~~~~~~~~~~  136 (178)
T 2lkc_A           59 FLDTPGH-EAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEANP-DRVMQELMEYNL  136 (178)
T ss_dssp             ESCCCSS-SSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSCH-HHHHHHHTTTTC
T ss_pred             EEECCCC-HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCCH-HHHHHHHHhcCc
Confidence            4456766 22222223446789999999999876544333333333  2689999999999986421 1222223221  


Q ss_pred             -----C--ceEEEeccccccchhhhHHHHHHhhh
Q 021210          176 -----G--TKVIFSNGQLGMGTMKLSRLAKALAS  202 (316)
Q Consensus       176 -----g--~~vi~iSa~~g~gi~~L~~~L~~l~~  202 (316)
                           +  ..++++||++|.|+++|.+.+.+...
T Consensus       137 ~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~  170 (178)
T 2lkc_A          137 VPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSE  170 (178)
T ss_dssp             CBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHH
T ss_pred             ChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhh
Confidence                 1  47889999999999999887766543

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=98.51  E-value=6.9e-08  Score=96.89  Aligned_cols=39  Identities=23%  Similarity=0.316  Sum_probs=33.6

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCccc--ccCCCCCceee
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMC--PAAPRPGVTRV  254 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~--~vs~~pgtT~~  254 (316)
                      ...+|+++|.+|+|||||+|+|++.+..  .++..|+||+.
T Consensus        64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~  104 (550)
T 2qpt_A           64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCF  104 (550)
T ss_dssp             SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceE
Confidence            3568999999999999999999998765  58888888764

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.51  E-value=1.7e-07  Score=79.66  Aligned_cols=101  Identities=12%  Similarity=0.002  Sum_probs=68.7

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHH---HHHHh---CCCCEEEEEEccCCCChHh-HHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPL---MDQWL---GNRKRILVLNREDMISMAD-RNAWAT  170 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~--~~~---i~~~l---~~k~~IlVlNK~DLv~~~~-~~~~~~  170 (316)
                      +-++||+ .++.......+..+|++++|+|+.++.+..  ...   +....   .+.|+++|+||+|+.+... .+...+
T Consensus        60 l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~  138 (199)
T 2gf0_A           60 ITDTTGS-HQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQA  138 (199)
T ss_dssp             EEECCGG-GSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHH
T ss_pred             EEeCCCh-HHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHH
Confidence            4567887 344455566789999999999998643221  111   22221   2579999999999975322 222233


Q ss_pred             HHHhcCceEEEeccccccchhhhHHHHHHhh
Q 021210          171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (316)
Q Consensus       171 ~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l~  201 (316)
                      .....+..++.+||++|.|+++|.+.+.+..
T Consensus       139 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  169 (199)
T 2gf0_A          139 VAQEWKCAFMETSAKMNYNVKELFQELLTLE  169 (199)
T ss_dssp             HHHHHTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred             HHHHhCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence            3445577899999999999999988876654

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=98.50  E-value=5.6e-08  Score=94.55  Aligned_cols=59  Identities=24%  Similarity=0.340  Sum_probs=37.7

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEE--e-CC-cEEEEeCCCcccC
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-GK-DLEFLDSPGIIPM  275 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~--~-~~-~~~liDTPGi~~~  275 (316)
                      .++|+++|.+|+|||||+|+|++.....++..+|+|.+.....  . +. .+.|+||||+...
T Consensus        34 ~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~   96 (423)
T 3qq5_A           34 RRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDV   96 (423)
T ss_dssp             CEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcc
Confidence            5689999999999999999999988777889999998864333  2 23 6899999999754

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=98.50  E-value=1.5e-07  Score=78.25  Aligned_cols=59  Identities=20%  Similarity=0.299  Sum_probs=41.9

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccc-cCCCCCceeeEEEEEeCC---cEEEEeCCCccc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGIIP  274 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~-vs~~pgtT~~~~~~~~~~---~~~liDTPGi~~  274 (316)
                      ..++|+++|.+|||||||+|+|.+..... ..+..|++.....+..+.   .+.++||||...
T Consensus        14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   76 (179)
T 1z0f_A           14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER   76 (179)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGG
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChH
Confidence            35789999999999999999999766322 223334444445555543   578999999754

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=98.50  E-value=7.7e-08  Score=80.85  Aligned_cols=99  Identities=9%  Similarity=0.047  Sum_probs=57.5

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--------CCCCEEEEEEccCCCChHh--HHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNREDMISMAD--RNAWA  169 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--------~~k~~IlVlNK~DLv~~~~--~~~~~  169 (316)
                      +-++||+ .++.......+..+|++|+|+|+.++.+..  .+..++        .+.|+++|+||+|+.+..+  .++..
T Consensus        61 l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~  137 (183)
T 2fu5_C           61 IWDTAGQ-ERFRTITTAYYRGAMGIMLVYDITNEKSFD--NIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGE  137 (183)
T ss_dssp             EEEC----------CCTTTTTCSEEEEEEETTCHHHHH--HHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHH
T ss_pred             EEcCCCC-hhhhhhHHHHHhcCCEEEEEEECcCHHHHH--HHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHH
Confidence            5578887 445444456688999999999998753321  111121        2579999999999975321  22333


Q ss_pred             HHHHhcCceEEEeccccccchhhhHHHHHHhh
Q 021210          170 TYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (316)
Q Consensus       170 ~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l~  201 (316)
                      ++....+..++.+||++|.|++++.+.+.+..
T Consensus       138 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~i  169 (183)
T 2fu5_C          138 KLALDYGIKFMETSAKANINVENAFFTLARDI  169 (183)
T ss_dssp             HHHHHHTCEEEECCC---CCHHHHHHHHHHHH
T ss_pred             HHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            44455678899999999999999987765543

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=98.50  E-value=1.6e-07  Score=78.91  Aligned_cols=56  Identities=23%  Similarity=0.204  Sum_probs=39.2

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEeCC---cEEEEeCCCccc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGIIP  274 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~~~---~~~liDTPGi~~  274 (316)
                      .++|+++|.+|||||||+|+|.+..  .....++|+.+..  .+..+.   .+.++||||...
T Consensus         4 ~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   64 (189)
T 4dsu_A            4 EYKLVVVGADGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE   64 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSS--CCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC--
T ss_pred             EEEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHH
Confidence            5789999999999999999999765  3444555555432  233332   266899999754

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=98.50  E-value=8e-08  Score=80.14  Aligned_cols=100  Identities=16%  Similarity=0.046  Sum_probs=66.5

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-H----HHHHh---CCCC-EEEEEEccCCCChHh--HHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L----MDQWL---GNRK-RILVLNREDMISMAD--RNAW  168 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-~----i~~~l---~~k~-~IlVlNK~DLv~~~~--~~~~  168 (316)
                      +-++||+ .++.......+..+|++|+|+|+.++.+..+. .    +....   ...| +++|+||+|+.+..+  .++.
T Consensus        60 ~~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~  138 (178)
T 2hxs_A           60 IWDIGGQ-TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKH  138 (178)
T ss_dssp             EEECTTC-CTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHH
T ss_pred             EEECCCC-ccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHH
Confidence            5567887 34444556678999999999999875432111 1    11111   1455 789999999965321  1223


Q ss_pred             HHHHHhcCceEEEeccccccchhhhHHHHHHh
Q 021210          169 ATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       169 ~~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      .++....+..++++||++|.|++++.+.+...
T Consensus       139 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  170 (178)
T 2hxs_A          139 LRFCQENGFSSHFVSAKTGDSVFLCFQKVAAE  170 (178)
T ss_dssp             HHHHHHHTCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Confidence            33444567889999999999999988876554

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=98.50  E-value=1.8e-07  Score=81.45  Aligned_cols=101  Identities=12%  Similarity=0.010  Sum_probs=58.6

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH------HHHHHhCCCCEEEEEEccCCCChHhH--------
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP------LMDQWLGNRKRILVLNREDMISMADR--------  165 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~------~i~~~l~~k~~IlVlNK~DLv~~~~~--------  165 (316)
                      +-++||+ .++.......+..+|++|+|+|+.++.+..+.      .+.....+.|+++|+||+|+.+....        
T Consensus        86 l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  164 (214)
T 2j1l_A           86 IWDTAGQ-DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNG  164 (214)
T ss_dssp             EEEC----------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTT
T ss_pred             EEECCCc-hhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccc
Confidence            5567887 45555556678999999999999865332211      11122236899999999999765321        


Q ss_pred             ------HHHHHHHHhcCc-eEEEeccccccchhhhHHHHHHhh
Q 021210          166 ------NAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKALA  201 (316)
Q Consensus       166 ------~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~L~~l~  201 (316)
                            ++..++....+. .++.+||++|.|++++.+.+.+..
T Consensus       165 ~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~  207 (214)
T 2j1l_A          165 LEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVA  207 (214)
T ss_dssp             CCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             cCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence                  122333445565 889999999999999888765543

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=98.50  E-value=7.7e-08  Score=80.17  Aligned_cols=101  Identities=13%  Similarity=0.028  Sum_probs=67.5

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHH---h--CCCCEEEEEEccCCCChHh--HHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQW---L--GNRKRILVLNREDMISMAD--RNAWAT  170 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~---l--~~k~~IlVlNK~DLv~~~~--~~~~~~  170 (316)
                      +-++||+ .++.......+..+|++++|+|+.++.+..+  ..+..+   .  .+.|+++|+||+|+.+..+  .++..+
T Consensus        61 ~~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~  139 (181)
T 2fn4_A           61 ILDTAGQ-EEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASA  139 (181)
T ss_dssp             EEECCCT-TTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred             EEECCCc-hhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHH
Confidence            4567887 3444445567889999999999986432211  111122   1  2679999999999975422  122333


Q ss_pred             HHHhcCceEEEeccccccchhhhHHHHHHhh
Q 021210          171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (316)
Q Consensus       171 ~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l~  201 (316)
                      +....+..++.+||++|.|++++.+.+.+..
T Consensus       140 ~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~  170 (181)
T 2fn4_A          140 FGASHHVAYFEASAKLRLNVDEAFEQLVRAV  170 (181)
T ss_dssp             HHHHTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             HHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence            3445577899999999999999888766543

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=98.49  E-value=1.6e-08  Score=85.78  Aligned_cols=101  Identities=15%  Similarity=0.067  Sum_probs=65.4

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHhC-----CCCEEEEEEccCCCChHhHHHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWLG-----NRKRILVLNREDMISMADRNAWATYF  172 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l~-----~k~~IlVlNK~DLv~~~~~~~~~~~~  172 (316)
                      +-++||+ .++.......++.+|++|+|+|+.++.+..  ...+..++.     +.|+++|+||+|+.+....+++.+.+
T Consensus        70 ~~Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~  148 (189)
T 2x77_A           70 VWDLGGQ-TGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQL  148 (189)
T ss_dssp             EEEECCS-SSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHT
T ss_pred             EEECCCC-HhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHh
Confidence            4456766 222222334567999999999998764322  122333332     57999999999998653333333322


Q ss_pred             H-----hcCceEEEeccccccchhhhHHHHHHhh
Q 021210          173 A-----KQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (316)
Q Consensus       173 ~-----~~g~~vi~iSa~~g~gi~~L~~~L~~l~  201 (316)
                      .     ..+..++++||++|.|++++.+.+.+..
T Consensus       149 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  182 (189)
T 2x77_A          149 GVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERL  182 (189)
T ss_dssp             TGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ChhhccCCceEEEEccCCCccCHHHHHHHHHHHH
Confidence            1     2235689999999999999888766543

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=98.49  E-value=1.2e-07  Score=81.09  Aligned_cols=100  Identities=10%  Similarity=-0.017  Sum_probs=60.1

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-------CCCCEEEEEEccCCCC-hHh--HHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-------GNRKRILVLNREDMIS-MAD--RNA  167 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l-------~~k~~IlVlNK~DLv~-~~~--~~~  167 (316)
                      +-++||+ .++.......+..+|++|+|+|+.++.+..+  ..+..+.       .+.|+++|+||+|+.+ ..+  .++
T Consensus        77 l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~  155 (208)
T 2yc2_C           77 LLDTAGS-DLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDM  155 (208)
T ss_dssp             EEETTTT-HHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHH
T ss_pred             EEECCCc-HHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHH
Confidence            5678998 5555555677889999999999987543211  1111111       3678999999999986 322  233


Q ss_pred             HHHHHHhcCceEEEecccc-ccchhhhHHHHHHh
Q 021210          168 WATYFAKQGTKVIFSNGQL-GMGTMKLSRLAKAL  200 (316)
Q Consensus       168 ~~~~~~~~g~~vi~iSa~~-g~gi~~L~~~L~~l  200 (316)
                      ..++....+..++.+||++ |.|++++.+.+.+.
T Consensus       156 ~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~  189 (208)
T 2yc2_C          156 AQDWATTNTLDFFDVSANPPGKDADAPFLSIATT  189 (208)
T ss_dssp             HHHHHHHTTCEEEECCC-------CHHHHHHHHH
T ss_pred             HHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHH
Confidence            4445556678899999999 99999988776553

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.49  E-value=2.4e-07  Score=78.85  Aligned_cols=100  Identities=12%  Similarity=-0.051  Sum_probs=68.7

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh-----CCCCEEEEEEccCCCChHh--HHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLMDQWL-----GNRKRILVLNREDMISMAD--RNAWATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-~~i~~~l-----~~k~~IlVlNK~DLv~~~~--~~~~~~~  171 (316)
                      +-++||+ .++.......+..+|++|+|+|+.++.+... ..+...+     .+.|+++|+||+|+.+...  .++..+.
T Consensus        76 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  154 (191)
T 3dz8_A           76 IWDTAGQ-ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLL  154 (191)
T ss_dssp             EECHHHH-HHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred             EEeCCCh-HHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHH
Confidence            5567887 5666677788999999999999976432211 1111111     2678999999999864321  1222333


Q ss_pred             HHhcCceEEEeccccccchhhhHHHHHHh
Q 021210          172 FAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      ....+..++.+||++|.|++++.+.+.+.
T Consensus       155 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  183 (191)
T 3dz8_A          155 AEQLGFDFFEASAKENISVRQAFERLVDA  183 (191)
T ss_dssp             HHHHTCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             HHHcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            44557889999999999999988776543

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=98.49  E-value=1.2e-07  Score=78.87  Aligned_cols=58  Identities=24%  Similarity=0.288  Sum_probs=41.4

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEeCC---cEEEEeCCCccc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGIIP  274 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~~~---~~~liDTPGi~~  274 (316)
                      ..++|+++|.+|||||||+|+|.+... .....|++|.+..  .+..+.   .+.++||||...
T Consensus         8 ~~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   70 (181)
T 3tw8_B            8 HLFKLLIIGDSGVGKSSLLLRFADNTF-SGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQER   70 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGG
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCC-CCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchh
Confidence            357899999999999999999997763 3455566665543  334433   478999999643

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=98.49  E-value=7.1e-08  Score=79.56  Aligned_cols=101  Identities=14%  Similarity=0.011  Sum_probs=66.8

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHH---h-CCCCEEEEEEccCCCChHh-HHHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQW---L-GNRKRILVLNREDMISMAD-RNAWATYF  172 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~---l-~~k~~IlVlNK~DLv~~~~-~~~~~~~~  172 (316)
                      +-++||+ .++.......+..+|++++|+|+.++.+..+  ..+..+   . .+.|+++|+||+|+.+... .+...++.
T Consensus        56 l~D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  134 (170)
T 1g16_A           56 IWDTAGQ-ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALA  134 (170)
T ss_dssp             EECCTTG-GGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHH
T ss_pred             EEeCCCC-hhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHH
Confidence            3367777 3344445667899999999999986543211  111111   1 2678999999999954321 22233344


Q ss_pred             HhcCceEEEeccccccchhhhHHHHHHhh
Q 021210          173 AKQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (316)
Q Consensus       173 ~~~g~~vi~iSa~~g~gi~~L~~~L~~l~  201 (316)
                      .+.+..++++||++|.|++++.+.+.+..
T Consensus       135 ~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~  163 (170)
T 1g16_A          135 KELGIPFIESSAKNDDNVNEIFFTLAKLI  163 (170)
T ss_dssp             HHHTCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             HHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            45677899999999999999888766543

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=98.49  E-value=1.9e-07  Score=78.95  Aligned_cols=101  Identities=11%  Similarity=-0.013  Sum_probs=62.5

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHhC--CCCEEEEEEccCCCChH-hHHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG--NRKRILVLNREDMISMA-DRNAWATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l~--~k~~IlVlNK~DLv~~~-~~~~~~~~  171 (316)
                      +-++||+ .++.......+..+|++++|+|+.++.+..+.     .+.....  +.|+++|+||+|+.+.. ..++..+.
T Consensus        73 l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~  151 (190)
T 3con_A           73 ILDTAGQ-EEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHEL  151 (190)
T ss_dssp             EEECCC------------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHH
T ss_pred             EEECCCh-HHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHH
Confidence            4567887 45555666778999999999999865432111     1222222  67999999999997532 12233344


Q ss_pred             HHhcCceEEEeccccccchhhhHHHHHHhh
Q 021210          172 FAKQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (316)
Q Consensus       172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~l~  201 (316)
                      ..+.+..++.+||++|.|++++.+.+.+..
T Consensus       152 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  181 (190)
T 3con_A          152 AKSYGIPFIETSAKTRQGVEDAFYTLVREI  181 (190)
T ss_dssp             HHHHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            455677899999999999999887766543

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=98.48  E-value=4.3e-08  Score=82.22  Aligned_cols=101  Identities=15%  Similarity=-0.014  Sum_probs=66.3

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHH----HHhCCCCEEEEEEccCCCChHh---------
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMD----QWLGNRKRILVLNREDMISMAD---------  164 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~----~~l~~k~~IlVlNK~DLv~~~~---------  164 (316)
                      +-++||+ .++.......+..+|++++|+|+.++.+..+.  .+.    ....+.|+++|+||+|+.+...         
T Consensus        57 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  135 (186)
T 1mh1_A           57 LWDTAGQ-EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK  135 (186)
T ss_dssp             EECCCCS-GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTT
T ss_pred             EEECCCC-HhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccc
Confidence            4467887 33433344567899999999999865432221  122    2223789999999999975421         


Q ss_pred             -----HHHHHHHHHhcCc-eEEEeccccccchhhhHHHHHHhh
Q 021210          165 -----RNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKALA  201 (316)
Q Consensus       165 -----~~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~L~~l~  201 (316)
                           .++..++....+. .++++||++|.|++++.+.+.+..
T Consensus       136 ~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~  178 (186)
T 1mh1_A          136 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV  178 (186)
T ss_dssp             CCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHH
Confidence                 1122233444565 899999999999999988766543

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=98.48  E-value=3.6e-08  Score=85.26  Aligned_cols=101  Identities=11%  Similarity=0.009  Sum_probs=64.7

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc------HHHHHHhCCCCEEEEEEccCCCChHh---------
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH------PLMDQWLGNRKRILVLNREDMISMAD---------  164 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~------~~i~~~l~~k~~IlVlNK~DLv~~~~---------  164 (316)
                      +-++||+ .++.......+..+|++|+|+|+.++.+..+      ..+.....+.|+++|+||+|+.+...         
T Consensus        61 i~Dt~G~-~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v  139 (212)
T 2j0v_A           61 LWDTAGQ-EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVI  139 (212)
T ss_dssp             EECCCCC-CCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCC
T ss_pred             EEECCCc-HHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCC
Confidence            3456776 2233333356789999999999986543221      11122223789999999999865432         


Q ss_pred             -HHHHHHHHHhcCc-eEEEeccccccchhhhHHHHHHhh
Q 021210          165 -RNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKALA  201 (316)
Q Consensus       165 -~~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~L~~l~  201 (316)
                       .++..+.....+. .++.+||++|.|++++.+.+....
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~  178 (212)
T 2j0v_A          140 TSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV  178 (212)
T ss_dssp             CHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHH
Confidence             2222333445564 889999999999999988766543

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=98.48  E-value=8.4e-08  Score=83.28  Aligned_cols=101  Identities=8%  Similarity=-0.087  Sum_probs=66.2

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHhC-CCCEEEEEEccCCCChHhH--HHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG-NRKRILVLNREDMISMADR--NAWATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l~-~k~~IlVlNK~DLv~~~~~--~~~~~~  171 (316)
                      +-++||+ .++.......+..+|++|+|+|+.++.+..+.     .+..... +.|+++|+||+|+.+..+.  +...++
T Consensus        65 l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  143 (218)
T 4djt_A           65 VWDTAGQ-EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEV  143 (218)
T ss_dssp             EEEECSG-GGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHH
T ss_pred             EEecCCc-hhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHH
Confidence            4567887 33434444668889999999999876433221     1122222 5799999999999865321  222233


Q ss_pred             HHhcCceEEEeccccccchhhhHHHHHHhh
Q 021210          172 FAKQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (316)
Q Consensus       172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~l~  201 (316)
                      ....+..++.+||++|.|++++.+.+.+..
T Consensus       144 ~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~  173 (218)
T 4djt_A          144 LKGKNYEYFEISAKTAHNFGLPFLHLARIF  173 (218)
T ss_dssp             TTTCCCEEEEEBTTTTBTTTHHHHHHHHHH
T ss_pred             HHHcCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence            344567899999999999999988776654

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=98.48  E-value=1.7e-07  Score=80.32  Aligned_cols=100  Identities=11%  Similarity=-0.059  Sum_probs=68.2

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-HHHHHh-----CCCCEEEEEEccCCCChHh--HHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQWL-----GNRKRILVLNREDMISMAD--RNAWATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-~i~~~l-----~~k~~IlVlNK~DLv~~~~--~~~~~~~  171 (316)
                      +-++||+ .++.......+..+|++|+|+|+.++.+.... .+...+     .+.|+++|+||+|+.+..+  .+...+.
T Consensus        61 l~Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  139 (203)
T 1zbd_A           61 IWDTAGL-ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQL  139 (203)
T ss_dssp             EEEECCS-GGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHH
T ss_pred             EEECCCc-hhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHH
Confidence            4567888 45555666778999999999999865322110 111111     3679999999999975322  2223333


Q ss_pred             HHhcCceEEEeccccccchhhhHHHHHHh
Q 021210          172 FAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      ....+..++.+||++|.|++++.+.+...
T Consensus       140 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  168 (203)
T 1zbd_A          140 ADHLGFEFFEASAKDNINVKQTFERLVDV  168 (203)
T ss_dssp             HHHHTCEEEECBTTTTBSSHHHHHHHHHH
T ss_pred             HHHCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            44557889999999999999988776553

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=98.48  E-value=1.9e-07  Score=76.15  Aligned_cols=100  Identities=10%  Similarity=-0.020  Sum_probs=66.3

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHhC--CCCEEEEEEccCCCChHh-HHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWLG--NRKRILVLNREDMISMAD-RNAWATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l~--~k~~IlVlNK~DLv~~~~-~~~~~~~  171 (316)
                      +-++||+ .++.......+..+|.+++|+|+.++.+..+     ..+.....  +.|+++|+||+|+.+... .+...+.
T Consensus        55 ~~D~~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~  133 (166)
T 2ce2_X           55 ILDTAGQ-EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDL  133 (166)
T ss_dssp             EEECCCC-SSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHH
T ss_pred             EEECCCc-hhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHH
Confidence            3456776 3334445567889999999999876432211     11122222  689999999999986322 2223333


Q ss_pred             HHhcCceEEEeccccccchhhhHHHHHHh
Q 021210          172 FAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      ..+.+..++.+|+++|.|++++.+.+.+.
T Consensus       134 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  162 (166)
T 2ce2_X          134 ARSYGIPYIETSAKTRQGVEDAFYTLVRE  162 (166)
T ss_dssp             HHHHTCCEEEECTTTCTTHHHHHHHHHHH
T ss_pred             HHHcCCeEEEecCCCCCCHHHHHHHHHHH
Confidence            44567789999999999999988776543

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=98.47  E-value=2.3e-07  Score=76.03  Aligned_cols=55  Identities=22%  Similarity=0.240  Sum_probs=37.7

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~  273 (316)
                      .++|+++|.+|||||||+|+|.+...  ....++|+...  ..+..+.   .+.++||||..
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~   63 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQE   63 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC--
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCcc--CCCCCCCcceEEEEEEEECCEEEEEEEEECCCcc
Confidence            47899999999999999999997663  23334444332  2233333   57899999965

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=98.47  E-value=2e-07  Score=79.17  Aligned_cols=60  Identities=20%  Similarity=0.350  Sum_probs=41.8

Q ss_pred             ccceEEeEeccCCCCcchhHHhhhcCcccccC-CCCCceeeEEEEEeC---CcEEEEeCCCccc
Q 021210          215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAA-PRPGVTRVLKWVRFG---KDLEFLDSPGIIP  274 (316)
Q Consensus       215 ~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs-~~pgtT~~~~~~~~~---~~~~liDTPGi~~  274 (316)
                      ...++|+++|.+|||||||+|+|.+....... +..|++.....+..+   ..+.|+||||...
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   86 (193)
T 2oil_A           23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER   86 (193)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCT
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchh
Confidence            34689999999999999999999987643322 223444444444433   2478999999854

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=98.47  E-value=1.8e-07  Score=77.89  Aligned_cols=56  Identities=21%  Similarity=0.259  Sum_probs=38.2

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee--EEEEEeCC---cEEEEeCCCcc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~--~~~~~~~~---~~~liDTPGi~  273 (316)
                      .++|+++|.+|||||||+|+|.+... .....|.++.+  ...+..+.   .+.++||||..
T Consensus         7 ~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~   67 (177)
T 1wms_A            7 LFKVILLGDGGVGKSSLMNRYVTNKF-DTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE   67 (177)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCC-CC----CCSEEEEEEEEEETTEEEEEEEEECCCCG
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCch
Confidence            57899999999999999999997653 23333444433  33344443   58899999964

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=98.47  E-value=3.1e-08  Score=86.44  Aligned_cols=100  Identities=11%  Similarity=-0.060  Sum_probs=68.9

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHhCCCCEEEEEEccCCCChHhHHHHHHHHHh
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWLGNRKRILVLNREDMISMADRNAWATYFAK  174 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l~~k~~IlVlNK~DLv~~~~~~~~~~~~~~  174 (316)
                      +-++||+ .++.......+..+|++|+|+|+.++.+..+     ..+.....+.|+++|+||+|+.+.....+..++...
T Consensus        68 i~Dt~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~  146 (221)
T 3gj0_A           68 VWDTAGQ-EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRK  146 (221)
T ss_dssp             EEEECSG-GGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHH
T ss_pred             EEeCCCh-HHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHH
Confidence            5567887 3444445567889999999999987543221     112222237899999999999764332222333445


Q ss_pred             cCceEEEeccccccchhhhHHHHHHh
Q 021210          175 QGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       175 ~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      .+..++.+||++|.|++++.+.+...
T Consensus       147 ~~~~~~~~Sa~~~~gi~~l~~~l~~~  172 (221)
T 3gj0_A          147 KNLQYYDISAKSNYNFEKPFLWLARK  172 (221)
T ss_dssp             HTCEEEECBGGGTBTTTHHHHHHHHH
T ss_pred             cCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            57889999999999999988776554

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.47  E-value=4.1e-08  Score=93.05  Aligned_cols=24  Identities=42%  Similarity=0.618  Sum_probs=21.7

Q ss_pred             cceEEeEeccCCCCcchhHHhhhc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~  239 (316)
                      ....|+|+|+||+|||||+|+|.+
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~   96 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGK   96 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHH
Confidence            356799999999999999999986

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=98.46  E-value=7.2e-08  Score=82.08  Aligned_cols=99  Identities=12%  Similarity=0.044  Sum_probs=65.0

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc------HHHHHHhCCCCEEEEEEccCCCChHh---------
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH------PLMDQWLGNRKRILVLNREDMISMAD---------  164 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~------~~i~~~l~~k~~IlVlNK~DLv~~~~---------  164 (316)
                      +-++||+ .++.......+..+|++|+|+|+.++.+..+      ..+.....+.|+++|+||+|+.+...         
T Consensus        70 i~D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  148 (194)
T 2atx_A           70 LYDTAGQ-EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMK  148 (194)
T ss_dssp             EECCCCS-SSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTT
T ss_pred             EEECCCC-cchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhccccc
Confidence            4466776 3333334456788999999999987543211      12222233789999999999976421         


Q ss_pred             -----HHHHHHHHHhcCc-eEEEeccccccchhhhHHHHHH
Q 021210          165 -----RNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       165 -----~~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                           .++..++....+. .++.+||++|.|++++.+.+.+
T Consensus       149 ~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~  189 (194)
T 2atx_A          149 EKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAII  189 (194)
T ss_dssp             CCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHH
T ss_pred             CcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHH
Confidence                 1222333444565 7899999999999998877654

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=98.46  E-value=2.4e-07  Score=76.22  Aligned_cols=100  Identities=15%  Similarity=-0.043  Sum_probs=56.9

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-----CCCCEEEEEEccCCCChHh--HHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMAD--RNAWAT  170 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l-----~~k~~IlVlNK~DLv~~~~--~~~~~~  170 (316)
                      +-++||+ .++.......+..+|++++|+|..++.+..+  ..+..+.     .+.|+++|+||+|+.+..+  .+...+
T Consensus        53 i~D~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~  131 (166)
T 3q72_A           53 VYDIWEQ-DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRA  131 (166)
T ss_dssp             EEECC----------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHH
T ss_pred             EEECCCC-ccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHH
Confidence            4467887 4555555667899999999999986532211  1111121     2579999999999975432  122223


Q ss_pred             HHHhcCceEEEeccccccchhhhHHHHHHh
Q 021210          171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       171 ~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      .....+..++.+||++|.|++++.+.+.+.
T Consensus       132 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  161 (166)
T 3q72_A          132 CAVVFDCKFIETSAALHHNVQALFEGVVRQ  161 (166)
T ss_dssp             HHHHTTCEEEECBGGGTBSHHHHHHHHHHH
T ss_pred             HHHHhCCcEEEeccCCCCCHHHHHHHHHHH
Confidence            344556789999999999999988776553

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=98.46  E-value=2.3e-07  Score=76.28  Aligned_cols=58  Identities=24%  Similarity=0.288  Sum_probs=39.4

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee--EEEEEeCC---cEEEEeCCCccc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGIIP  274 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~--~~~~~~~~---~~~liDTPGi~~  274 (316)
                      ..++|+++|.+|||||||+|+|.+... .....|.++.+  ...+..+.   .+.++||||...
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   66 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKGIF-TKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE   66 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCC-CCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHh
Confidence            357899999999999999999997653 22223333333  23333333   578999999754

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=98.46  E-value=8.5e-08  Score=81.25  Aligned_cols=57  Identities=26%  Similarity=0.390  Sum_probs=42.8

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCccc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGIIP  274 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~~  274 (316)
                      ..++|+++|.+|||||||+|+|.+.....+.+..|++...  +.. +..+.++||||...
T Consensus        15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~--~~~~~~~l~i~Dt~G~~~   72 (181)
T 1fzq_A           15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKS--VQSQGFKLNVWDIGGQRK   72 (181)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEE--EEETTEEEEEEECSSCGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEE--EEECCEEEEEEECCCCHH
Confidence            3578999999999999999999987655556666655432  222 44688999999753

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=98.46  E-value=1.1e-07  Score=80.20  Aligned_cols=58  Identities=17%  Similarity=0.223  Sum_probs=43.3

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEeCCcEEEEeCCCccc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIP  274 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~~~~~~liDTPGi~~  274 (316)
                      ..++|+++|.+|||||||+|+|.+.......+..|.+.....+ .+..+.++||||...
T Consensus        20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~   77 (181)
T 2h17_A           20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVI-NNTRFLMWDIGGQES   77 (181)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEE-TTEEEEEEEESSSGG
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEE-CCEEEEEEECCCCHh
Confidence            3579999999999999999999987765666666755432221 244688999999853

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=98.45  E-value=1.8e-07  Score=87.82  Aligned_cols=116  Identities=9%  Similarity=-0.003  Sum_probs=74.5

Q ss_pred             ccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHhC-----CCCEEEEE
Q 021210           84 ADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWLG-----NRKRILVL  154 (316)
Q Consensus        84 ~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l~-----~k~~IlVl  154 (316)
                      .|.+.....+......  +-++||+ .++.......+..+|++|+|+|+.++.+..  ...+..++.     +.|+++|+
T Consensus       195 pT~~~~~~~~~~~~~~l~i~Dt~G~-~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~  273 (329)
T 3o47_A          195 PTIGFNVETVEYKNISFTVWDVGGQ-DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFA  273 (329)
T ss_dssp             EETTEEEEEEEETTEEEEEEECC------CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEE
T ss_pred             cccceEEEEEecCcEEEEEEECCCC-HhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEE
Confidence            3666655544433222  6678997 556666677889999999999997654322  223333332     67899999


Q ss_pred             EccCCCChHhHHHHHHHHHh-----cCceEEEeccccccchhhhHHHHHHh
Q 021210          155 NREDMISMADRNAWATYFAK-----QGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       155 NK~DLv~~~~~~~~~~~~~~-----~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      ||+|+.+....+++.+.+..     .+..++.+||++|.|+++|.+.|.+.
T Consensus       274 NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~  324 (329)
T 3o47_A          274 NKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQ  324 (329)
T ss_dssp             ECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred             ECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHH
Confidence            99999865444444444322     22468899999999999998876553

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=98.45  E-value=1.4e-07  Score=79.63  Aligned_cols=56  Identities=21%  Similarity=0.352  Sum_probs=39.2

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCcc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII  273 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~  273 (316)
                      ..++|+++|.+|||||||+|+|.+.......+..|.+..  .+.. +..+.++||||..
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~Dt~G~~   73 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIK--TLEHRGFKLNIWDVGGQK   73 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEE--EEEETTEEEEEEEECCSH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceE--EEEECCEEEEEEECCCCH
Confidence            357899999999999999999998763233333343322  2223 3468899999974

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=98.45  E-value=1.4e-07  Score=82.30  Aligned_cols=60  Identities=17%  Similarity=0.166  Sum_probs=46.4

Q ss_pred             cceEEeEeccCCCCcchhHHhhh-cCcccccCCCCCceeeEEEEEeCC---cEEEEeCCCcccC
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLL-KRRMCPAAPRPGVTRVLKWVRFGK---DLEFLDSPGIIPM  275 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~-~~~~~~vs~~pgtT~~~~~~~~~~---~~~liDTPGi~~~  275 (316)
                      ..++|+++|.+|||||||+|+++ +.......+.+|+|.....+....   .+.++||||....
T Consensus        14 ~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~   77 (221)
T 3gj0_A           14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF   77 (221)
T ss_dssp             CEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHH
Confidence            46899999999999999999955 433445677889888876665543   4789999997543

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=98.45  E-value=8.6e-07  Score=77.87  Aligned_cols=89  Identities=13%  Similarity=0.053  Sum_probs=59.9

Q ss_pred             HHHHHHhhcCeEEEEEeCCCCCCCCcH---HHHHHh-C---CCCEEEEEEccCCCChHhH-----HHHHHHHHhcC--ce
Q 021210          113 ELKDQLKLMDVVIEVRDARIPLSTTHP---LMDQWL-G---NRKRILVLNREDMISMADR-----NAWATYFAKQG--TK  178 (316)
Q Consensus       113 ~l~~~i~~aDlIl~VvDar~~~~~~~~---~i~~~l-~---~k~~IlVlNK~DLv~~~~~-----~~~~~~~~~~g--~~  178 (316)
                      .+......+|++|+|+|+.++.+....   .+...+ .   +.|+++|+||+|+.+..+.     ....++....+  ..
T Consensus       101 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (228)
T 2qu8_A          101 TITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIK  180 (228)
T ss_dssp             HHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEE
T ss_pred             HHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCce
Confidence            344557888999999999887554322   222222 2   6799999999999865321     12223333444  67


Q ss_pred             EEEeccccccchhhhHHHHHHhh
Q 021210          179 VIFSNGQLGMGTMKLSRLAKALA  201 (316)
Q Consensus       179 vi~iSa~~g~gi~~L~~~L~~l~  201 (316)
                      ++++||++|.|++++.+.+....
T Consensus       181 ~~~~SA~~g~gi~~l~~~l~~~i  203 (228)
T 2qu8_A          181 FSSFSTLTGVGVEQAKITACELL  203 (228)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEEecccCCCHHHHHHHHHHHH
Confidence            89999999999999988766543

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=98.45  E-value=3.1e-07  Score=77.85  Aligned_cols=58  Identities=22%  Similarity=0.306  Sum_probs=41.9

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccc-cCCCCCceeeEEEEEeCC---cEEEEeCCCcc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~-vs~~pgtT~~~~~~~~~~---~~~liDTPGi~  273 (316)
                      ..++|+++|.+|||||||+|+|.+..... ..+..|++.....+....   .+.|+||||..
T Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   82 (189)
T 2gf9_A           21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE   82 (189)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCC
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcH
Confidence            45899999999999999999999765322 233445555544444432   57899999964

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=98.45  E-value=1.4e-07  Score=79.30  Aligned_cols=100  Identities=9%  Similarity=-0.040  Sum_probs=68.7

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HH---HHHh-CCCCEEEEEEccCCCChHh--HHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LM---DQWL-GNRKRILVLNREDMISMAD--RNAWATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i---~~~l-~~k~~IlVlNK~DLv~~~~--~~~~~~~  171 (316)
                      +-++||+ .++.......+..+|++|+|+|+.++.+..+.  .+   .... .+.|+++|+||+|+.+..+  ..+..++
T Consensus        63 l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  141 (186)
T 2bme_A           63 IWDTAGQ-ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRF  141 (186)
T ss_dssp             EEEECCS-GGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred             EEeCCCc-HHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHH
Confidence            4567887 45556666778999999999999875432111  11   1111 2678999999999964322  2333444


Q ss_pred             HHhcCceEEEeccccccchhhhHHHHHHh
Q 021210          172 FAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      ....+..++.+||++|.|++++.+.+...
T Consensus       142 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  170 (186)
T 2bme_A          142 AQENELMFLETSALTGENVEEAFVQCARK  170 (186)
T ss_dssp             HHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHcCCEEEEecCCCCCCHHHHHHHHHHH
Confidence            55667889999999999999988776543

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=98.45  E-value=1.7e-07  Score=80.44  Aligned_cols=99  Identities=13%  Similarity=0.003  Sum_probs=66.0

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-HHHHHh-----CCCCEEEEEEccCCCChH------h--H
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQWL-----GNRKRILVLNREDMISMA------D--R  165 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-~i~~~l-----~~k~~IlVlNK~DLv~~~------~--~  165 (316)
                      +-++||+ .++.......+..+|++|+|+|+.++.+..+. .+...+     .+.|+++|+||+|+.+..      +  .
T Consensus        81 i~Dt~G~-~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~  159 (199)
T 2p5s_A           81 LWDTAGQ-ERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPG  159 (199)
T ss_dssp             EEECTTC-TTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCH
T ss_pred             EEECCCC-cchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCH
Confidence            5577887 45566667788999999999999865432221 111111     267999999999996321      0  1


Q ss_pred             HHHHHHHHhcCceEEEeccccccchhhhHHHHHH
Q 021210          166 NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       166 ~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      +...++....+..++++||++|.|++++.+.+.+
T Consensus       160 ~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~  193 (199)
T 2p5s_A          160 HFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAR  193 (199)
T ss_dssp             HHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHH
Confidence            1222334455778999999999999988776554

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=98.45  E-value=5.5e-08  Score=92.04  Aligned_cols=55  Identities=31%  Similarity=0.462  Sum_probs=45.0

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEeC--CcEEEEeCCCccc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG--KDLEFLDSPGIIP  274 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~~--~~~~liDTPGi~~  274 (316)
                      +|+++|+||||||||||+|.+.+ ..++++|++|.+..  .+.++  ..+.|+||||+..
T Consensus       160 ~V~lvG~~nvGKSTLln~L~~~~-~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~  218 (342)
T 1lnz_A          160 DVGLVGFPSVGKSTLLSVVSSAK-PKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIE  218 (342)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEEC-CEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHH
T ss_pred             eeeeeCCCCCCHHHHHHHHHcCC-CccccCCccccCceEEEEEeCCCceEEEecCCCCcc
Confidence            68999999999999999999776 46788999998754  34443  5689999999864

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=98.44  E-value=1.8e-07  Score=79.50  Aligned_cols=100  Identities=8%  Similarity=-0.049  Sum_probs=67.6

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh----CCCCEEEEEEccCCCChHh--HHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL----GNRKRILVLNREDMISMAD--RNAWATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l----~~k~~IlVlNK~DLv~~~~--~~~~~~~  171 (316)
                      +-++||+ .++.......+..+|++|+|+|+.++.+...  ..+..+.    .+.|+++|+||+|+.+..+  ..+..++
T Consensus        78 i~Dt~G~-~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  156 (193)
T 2oil_A           78 IWDTAGL-ERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMF  156 (193)
T ss_dssp             EEEESCC-CTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred             EEeCCCc-hhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHH
Confidence            4467887 3444555677899999999999986543211  1122222    2568999999999975321  2233344


Q ss_pred             HHhcCceEEEeccccccchhhhHHHHHHh
Q 021210          172 FAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      ....+..++.+||++|.|++++.+.+.+.
T Consensus       157 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  185 (193)
T 2oil_A          157 AENNGLLFLETSALDSTNVELAFETVLKE  185 (193)
T ss_dssp             HHHTTCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred             HHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            45567889999999999999988776543

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=98.44  E-value=2.7e-07  Score=77.10  Aligned_cols=59  Identities=20%  Similarity=0.264  Sum_probs=40.9

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccC-CCCCceeeEEEEEeCC---cEEEEeCCCccc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAA-PRPGVTRVLKWVRFGK---DLEFLDSPGIIP  274 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs-~~pgtT~~~~~~~~~~---~~~liDTPGi~~  274 (316)
                      ..++|+++|.+|||||||+|+|.+....... +..|++.....+..+.   .+.++||||...
T Consensus        11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   73 (181)
T 2efe_B           11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER   73 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGG
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChh
Confidence            3578999999999999999999976543322 2234444444444432   578999999653

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=98.44  E-value=2.4e-07  Score=77.15  Aligned_cols=100  Identities=8%  Similarity=-0.073  Sum_probs=59.9

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--H---HHHHHh-----CCCCEEEEEEccCCCChHh---HH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--P---LMDQWL-----GNRKRILVLNREDMISMAD---RN  166 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~---~i~~~l-----~~k~~IlVlNK~DLv~~~~---~~  166 (316)
                      +-++||+ .++.......+..+|++|+|+|+.++.+..+  .   .+....     .+.|+++|+||+|+.+...   .+
T Consensus        62 l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~  140 (182)
T 1ky3_A           62 VWDTAGQ-ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEK  140 (182)
T ss_dssp             EECCC-----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHH
T ss_pred             EEECCCC-hHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHH
Confidence            4467887 4455555566889999999999986542211  1   111222     3679999999999964321   12


Q ss_pred             HHHHHHH-hcCceEEEeccccccchhhhHHHHHHh
Q 021210          167 AWATYFA-KQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       167 ~~~~~~~-~~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      +..++.. ..+..++.+||++|.|++++.+.+.+.
T Consensus       141 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  175 (182)
T 1ky3_A          141 SAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARS  175 (182)
T ss_dssp             HHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHH
Confidence            2222222 234678999999999999988876554

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.44  E-value=1.2e-07  Score=79.59  Aligned_cols=57  Identities=21%  Similarity=0.349  Sum_probs=39.8

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCccc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGIIP  274 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~~  274 (316)
                      ..++|+++|.+|||||||+|+|.+.......+..|.+..  .+.. +..+.++||||...
T Consensus        17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~~   74 (183)
T 1moz_A           17 KELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVE--TLSYKNLKLNVWDLGGQTS   74 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEE--EEEETTEEEEEEEEC----
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceE--EEEECCEEEEEEECCCCHh
Confidence            367899999999999999999997765555555564432  2233 44688999999854

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=98.43  E-value=2.7e-07  Score=76.18  Aligned_cols=57  Identities=21%  Similarity=0.307  Sum_probs=39.1

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~  273 (316)
                      ..++|+++|.+|||||||+|+|.+... .....|.++.+.  ..+..+.   .+.++||||..
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~   66 (170)
T 1z08_A            5 YSFKVVLLGEGCVGKTSLVLRYCENKF-NDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE   66 (170)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCC-CSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCC-CcCCCCccceEEEEEEEEECCEEEEEEEEECCCcH
Confidence            357899999999999999999997653 233344444433  3344432   46788999964

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=98.43  E-value=1.3e-07  Score=81.43  Aligned_cols=100  Identities=14%  Similarity=0.088  Sum_probs=66.1

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc------HHHHHHhCCCCEEEEEEccCCCChHhH--------
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH------PLMDQWLGNRKRILVLNREDMISMADR--------  165 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~------~~i~~~l~~k~~IlVlNK~DLv~~~~~--------  165 (316)
                      +-++||+ .++.......+..+|++|+|+|+.++.+..+      ..+.....+.|+++|+||+|+.+....        
T Consensus        77 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  155 (201)
T 2gco_A           77 LWDTAGQ-EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMK  155 (201)
T ss_dssp             EECCCCS-GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTT
T ss_pred             EEECCCc-hhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccc
Confidence            4467887 3343334456789999999999986532211      112222237899999999999865321        


Q ss_pred             ------HHHHHHHHhcCc-eEEEeccccccchhhhHHHHHHh
Q 021210          166 ------NAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       166 ------~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                            ++..++....+. .++.+||++|.|+++|.+.+.+.
T Consensus       156 ~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~  197 (201)
T 2gco_A          156 QEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRA  197 (201)
T ss_dssp             CCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             cCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHH
Confidence                  122233444555 78999999999999998876553

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=98.43  E-value=1.9e-07  Score=80.06  Aligned_cols=58  Identities=28%  Similarity=0.319  Sum_probs=37.4

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcc-cccCCCCCceeeEEEEEeCC---cEEEEeCCCcc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~-~~vs~~pgtT~~~~~~~~~~---~~~liDTPGi~  273 (316)
                      ..++|+++|.+|||||||+|+|.+... ....+..|++.....+.++.   .+.|+||||..
T Consensus        27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~   88 (199)
T 2p5s_A           27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE   88 (199)
T ss_dssp             -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCT
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCc
Confidence            357899999999999999999997653 23444456555555555543   47899999965

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=98.43  E-value=4.5e-07  Score=76.81  Aligned_cols=97  Identities=14%  Similarity=0.056  Sum_probs=63.9

Q ss_pred             cccccchHHHHH-HHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHh--CCCCEEEEEEccCCCChHh--HHHHH
Q 021210          100 VQWYPGHIAKTE-KELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWL--GNRKRILVLNREDMISMAD--RNAWA  169 (316)
Q Consensus       100 i~~~Pgh~~~~~-r~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l--~~k~~IlVlNK~DLv~~~~--~~~~~  169 (316)
                      +-++||+ .++. ......+..+|++|+|+|+.++.+...     ..+...+  .+.|+++|+||+|+.+..+  .+...
T Consensus        73 l~Dt~G~-~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~  151 (189)
T 1z06_A           73 LWDTAGQ-ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQ  151 (189)
T ss_dssp             EEECCCS-HHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHH
T ss_pred             EEECCCc-hhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHH
Confidence            5578998 4455 455677899999999999986532211     1222332  3679999999999965422  12223


Q ss_pred             HHHHhcCceEEEeccccc---cchhhhHHHH
Q 021210          170 TYFAKQGTKVIFSNGQLG---MGTMKLSRLA  197 (316)
Q Consensus       170 ~~~~~~g~~vi~iSa~~g---~gi~~L~~~L  197 (316)
                      ++....+..++.+||++|   .|++++.+.+
T Consensus       152 ~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l  182 (189)
T 1z06_A          152 KFADTHSMPLFETSAKNPNDNDHVEAIFMTL  182 (189)
T ss_dssp             HHHHHTTCCEEECCSSSGGGGSCHHHHHHHH
T ss_pred             HHHHHcCCEEEEEeCCcCCcccCHHHHHHHH
Confidence            334456778999999999   6666655543

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=98.43  E-value=1.1e-07  Score=81.86  Aligned_cols=99  Identities=13%  Similarity=0.075  Sum_probs=62.3

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF  172 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~  172 (316)
                      +-++||+ .++.......+..+|++++|+|+.++.+..  ...+..++     .+.|+++|.||+|+......++..+.+
T Consensus        73 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~  151 (198)
T 1f6b_A           73 TFDLGGH-IQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMF  151 (198)
T ss_dssp             EEEECC-----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred             EEECCCc-HhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHh
Confidence            4456887 334333445678999999999998753221  12233332     367999999999997532222333333


Q ss_pred             Hh-----------------cCceEEEeccccccchhhhHHHHHH
Q 021210          173 AK-----------------QGTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       173 ~~-----------------~g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      ..                 .+..++.+||++|.|++++.+.+.+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~  195 (198)
T 1f6b_A          152 GLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQ  195 (198)
T ss_dssp             TCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred             CcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHH
Confidence            21                 2356889999999999998877643

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=98.43  E-value=3e-07  Score=77.97  Aligned_cols=58  Identities=24%  Similarity=0.322  Sum_probs=40.1

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccc-cCCCCCceeeEEEEEeCC---cEEEEeCCCcc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~-vs~~pgtT~~~~~~~~~~---~~~liDTPGi~  273 (316)
                      ..++|+++|.+|||||||+|+|.+..... ..+..|++.....+..+.   .+.|+||||..
T Consensus        19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   80 (189)
T 1z06_A           19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE   80 (189)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCch
Confidence            35799999999999999999999765322 122223333334444443   57899999964

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=98.43  E-value=7.4e-08  Score=82.11  Aligned_cols=100  Identities=13%  Similarity=0.054  Sum_probs=67.4

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--H----HHHHHhCCCCEEEEEEccCCCChH----hHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--P----LMDQWLGNRKRILVLNREDMISMA----DRNAWA  169 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~----~i~~~l~~k~~IlVlNK~DLv~~~----~~~~~~  169 (316)
                      +-++||+ .++.......+..+|++|+|+|+.++.+..+  .    .+.....+.|+++|.||+|+.+..    ..++..
T Consensus        75 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~  153 (194)
T 3reg_A           75 LWDTAGQ-EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGD  153 (194)
T ss_dssp             EEEECCS-GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHH
T ss_pred             EEECCCc-HHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHH
Confidence            5567887 4444445566789999999999987543222  1    122223368999999999997531    122333


Q ss_pred             HHHHhcCce-EEEeccccccchhhhHHHHHHh
Q 021210          170 TYFAKQGTK-VIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       170 ~~~~~~g~~-vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      ++....+.. ++.+||++|.|++++.+.+.+.
T Consensus       154 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  185 (194)
T 3reg_A          154 DLCQKLGCVAYIEASSVAKIGLNEVFEKSVDC  185 (194)
T ss_dssp             HHHHHHTCSCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             HHHHhcCCCEEEEeecCCCCCHHHHHHHHHHH
Confidence            444555665 8999999999999988776554

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=98.43  E-value=2e-07  Score=76.85  Aligned_cols=58  Identities=21%  Similarity=0.308  Sum_probs=37.7

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcccC
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIPM  275 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~~~  275 (316)
                      .++|+++|.+|||||||+|+|.+... .....|.++.+.  ..+..+.   .+.++||||....
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~   65 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLVRFVEDKF-NPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERF   65 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCC-CC-------CCEEEEEEESSSCEEEEEEECCTTGGGT
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCC-CCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhh
Confidence            47899999999999999999997653 334445555443  3334332   4789999997543

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=98.43  E-value=1e-07  Score=78.79  Aligned_cols=98  Identities=14%  Similarity=-0.033  Sum_probs=62.6

Q ss_pred             ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHh-CCCCEEEEEEccCCCChHh--HHHHHHHH
Q 021210          101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL-GNRKRILVLNREDMISMAD--RNAWATYF  172 (316)
Q Consensus       101 ~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l-~~k~~IlVlNK~DLv~~~~--~~~~~~~~  172 (316)
                      -++||+ .++.......+..+|++++|+|+.++.+..+.     .+.... .+.|+++|+||+|+.+..+  .++..++.
T Consensus        60 ~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~  138 (170)
T 1z08_A           60 WDTAGQ-ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYA  138 (170)
T ss_dssp             EECCCC--------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHH
T ss_pred             EECCCc-HhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHH
Confidence            367887 44444444567899999999998765322111     111111 3678999999999975321  22333444


Q ss_pred             HhcCceEEEeccccccchhhhHHHHHH
Q 021210          173 AKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       173 ~~~g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      ...+..++++||++|.|++++.+.+.+
T Consensus       139 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~  165 (170)
T 1z08_A          139 ESVGAKHYHTSAKQNKGIEELFLDLCK  165 (170)
T ss_dssp             HHTTCEEEEEBTTTTBSHHHHHHHHHH
T ss_pred             HHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence            556788999999999999998877654

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=98.43  E-value=1e-07  Score=81.18  Aligned_cols=100  Identities=12%  Similarity=0.052  Sum_probs=67.0

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh----CCCCEEEEEEccCCCChHh--HHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL----GNRKRILVLNREDMISMAD--RNAWATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l----~~k~~IlVlNK~DLv~~~~--~~~~~~~  171 (316)
                      +-++||+ .++.......+..+|++|+|+|+.++.+..+  ..+..+.    .+.|+++|+||+|+.+..+  .++..++
T Consensus        74 i~Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~  152 (191)
T 2a5j_A           74 IWDTAGQ-ESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAF  152 (191)
T ss_dssp             EECCTTG-GGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred             EEECCCc-hhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHH
Confidence            4567887 3444445677899999999999986532221  1111111    2678999999999965322  2223344


Q ss_pred             HHhcCceEEEeccccccchhhhHHHHHHh
Q 021210          172 FAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      ..+.+..++.+||++|.|++++.+.+.+.
T Consensus       153 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  181 (191)
T 2a5j_A          153 AREHGLIFMETSAKTACNVEEAFINTAKE  181 (191)
T ss_dssp             HHHHTCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred             HHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            45567889999999999999988766543

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=98.43  E-value=2.6e-07  Score=75.83  Aligned_cols=56  Identities=23%  Similarity=0.236  Sum_probs=37.5

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCccc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP  274 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~~  274 (316)
                      .++|+++|.+|||||||+|+|.+...  ......|+...  ..+..+.   .+.++||||...
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~   63 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQ   63 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCC--CCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCS
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCCccceEEEEEEECCEEEEEEEEECCChHH
Confidence            46899999999999999999997643  22222333322  1223322   478999999754

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=98.43  E-value=2.7e-07  Score=76.69  Aligned_cols=57  Identities=21%  Similarity=0.297  Sum_probs=41.0

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCccc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP  274 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~~  274 (316)
                      .++|+++|.+|||||||+|+|++... .....|.++.+.  ..+..+.   .+.++||||...
T Consensus        14 ~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~   75 (179)
T 2y8e_A           14 KFKLVFLGEQSVGKTSLITRFMYDSF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER   75 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHH
Confidence            47899999999999999999997653 333445555553  2333433   578999999653

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=98.42  E-value=3.6e-07  Score=78.23  Aligned_cols=58  Identities=22%  Similarity=0.350  Sum_probs=41.4

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccc-cCCCCCceeeEEEEEeCC---cEEEEeCCCcc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~-vs~~pgtT~~~~~~~~~~---~~~liDTPGi~  273 (316)
                      ..++|+++|.+|||||||+|+|.+..... ..+..|++.....+....   .+.|+||||..
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   68 (203)
T 1zbd_A            7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE   68 (203)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCch
Confidence            35789999999999999999999765322 223345555544444432   57899999974

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.42  E-value=1.7e-07  Score=79.42  Aligned_cols=57  Identities=18%  Similarity=0.218  Sum_probs=39.5

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEeCCcEEEEeCCCccc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIP  274 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~~~~~~liDTPGi~~  274 (316)
                      .++|+++|.+|||||||+|+|.+.......+..|.+.....+ .+..+.++||||...
T Consensus        16 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~   72 (187)
T 1zj6_A           16 EHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVI-NNTRFLMWDIGGQES   72 (187)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEE-TTEEEEEEECCC---
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEE-CCEEEEEEECCCCHh
Confidence            578999999999999999999976655555555544332211 244688999999854

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=98.42  E-value=3.3e-07  Score=75.98  Aligned_cols=101  Identities=14%  Similarity=-0.097  Sum_probs=60.7

Q ss_pred             cccccchHHHHHHHH-HHHHhhcCeEEEEEeCCCCCCCCcH-HH-HHHh-----CCCCEEEEEEccCCCChHh--HHHHH
Q 021210          100 VQWYPGHIAKTEKEL-KDQLKLMDVVIEVRDARIPLSTTHP-LM-DQWL-----GNRKRILVLNREDMISMAD--RNAWA  169 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l-~~~i~~aDlIl~VvDar~~~~~~~~-~i-~~~l-----~~k~~IlVlNK~DLv~~~~--~~~~~  169 (316)
                      +-++||+.....+.+ ...+..+|++++|+|..++.+.... .+ ..+.     .+.|+++|+||+|+.+..+  .++..
T Consensus        56 ~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~  135 (175)
T 2nzj_A           56 VVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGR  135 (175)
T ss_dssp             EECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHH
T ss_pred             EEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHH
Confidence            456788733212222 3446789999999999765332111 11 1111     2679999999999975422  12222


Q ss_pred             HHHHhcCceEEEeccccccchhhhHHHHHHh
Q 021210          170 TYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       170 ~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      .+....+..++++||++|.|++++.+.+.+.
T Consensus       136 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  166 (175)
T 2nzj_A          136 ACAVVFDCKFIETSATLQHNVAELFEGVVRQ  166 (175)
T ss_dssp             HHHHHHTSEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             HHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Confidence            3344556789999999999999998876554

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=98.42  E-value=2.8e-07  Score=78.25  Aligned_cols=58  Identities=19%  Similarity=0.248  Sum_probs=38.5

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCcc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII  273 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~  273 (316)
                      ..++|+++|.+|||||||+|+|.+.........|.+......+.. +..+.++||||..
T Consensus        20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~   78 (190)
T 2h57_A           20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQG   78 (190)
T ss_dssp             -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCST
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCH
Confidence            357899999999999999999998763222222211111222333 4578999999964

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=98.42  E-value=1.4e-07  Score=81.24  Aligned_cols=100  Identities=9%  Similarity=-0.031  Sum_probs=69.0

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHH---h-CCCCEEEEEEccCCCChHh--HHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQW---L-GNRKRILVLNREDMISMAD--RNAWATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~---l-~~k~~IlVlNK~DLv~~~~--~~~~~~~  171 (316)
                      +-++||+ .++.......+..+|++|+|+|+.++.+..+  ..+..+   . .+.|+++|+||+|+.+..+  ..+..++
T Consensus        78 l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~  156 (200)
T 2o52_A           78 IWDTAGQ-ERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRF  156 (200)
T ss_dssp             EECCTTH-HHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred             EEcCCCc-HhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHH
Confidence            5578997 4555556677899999999999986542211  111111   1 2678999999999964322  2333444


Q ss_pred             HHhcCceEEEeccccccchhhhHHHHHHh
Q 021210          172 FAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      ....+..++.+||++|.|++++.+.+.+.
T Consensus       157 ~~~~~~~~~~~SA~~g~gi~~l~~~l~~~  185 (200)
T 2o52_A          157 AQENELMFLETSALTGENVEEAFLKCART  185 (200)
T ss_dssp             HHHTTCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred             HHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            55667889999999999999988776543

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=98.42  E-value=1.4e-07  Score=87.37  Aligned_cols=101  Identities=14%  Similarity=0.192  Sum_probs=71.4

Q ss_pred             cccccchHHHHHHHH--------HHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCC-hHhHHHH
Q 021210          100 VQWYPGHIAKTEKEL--------KDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMIS-MADRNAW  168 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l--------~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~-~~~~~~~  168 (316)
                      +-++||+..+....+        ...++.+|++++|+|+.. ++..+..+.+.+.  +.|.++|+||+|+.. .....+.
T Consensus        60 ~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~~~~~~~~  138 (301)
T 1ega_A           60 YVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPH  138 (301)
T ss_dssp             EESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHH
T ss_pred             EEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCccHHHHHHH
Confidence            456788852222222        233578999999999987 5555555655554  789999999999987 4544445


Q ss_pred             HHHHHh-cCc-eEEEeccccccchhhhHHHHHHhh
Q 021210          169 ATYFAK-QGT-KVIFSNGQLGMGTMKLSRLAKALA  201 (316)
Q Consensus       169 ~~~~~~-~g~-~vi~iSa~~g~gi~~L~~~L~~l~  201 (316)
                      .+.+.+ .+. .++++||++|.|+++|.+.+....
T Consensus       139 l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l  173 (301)
T 1ega_A          139 LQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHL  173 (301)
T ss_dssp             HHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred             HHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhC
Confidence            554543 453 689999999999999988876654

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=98.41  E-value=2.8e-07  Score=87.21  Aligned_cols=121  Identities=17%  Similarity=0.152  Sum_probs=75.7

Q ss_pred             hccccCCcceEEEeccc-c--ccccccchHHH------HHHHHHHHHhhcCeEEEEEeCCCCC-----CCCcH---HHHH
Q 021210           81 CDWADLDADLYYWTKSL-R--PVQWYPGHIAK------TEKELKDQLKLMDVVIEVRDARIPL-----STTHP---LMDQ  143 (316)
Q Consensus        81 e~~~~~d~~~~~~~~~~-~--~i~~~Pgh~~~------~~r~l~~~i~~aDlIl~VvDar~~~-----~~~~~---~i~~  143 (316)
                      ..+.|++.....+.-.- .  .+.++||+...      ......+.++++|++|+|+|+.+..     .....   ++..
T Consensus       188 ~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~  267 (342)
T 1lnz_A          188 YHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSE  267 (342)
T ss_dssp             TTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHH
T ss_pred             CCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHH
Confidence            34566666655444321 2  27788997432      2345556688899999999996521     11111   1222


Q ss_pred             H---hCCCCEEEEEEccCCCChHh-HHHHHHHHHhcCceEEEeccccccchhhhHHHHHHhhh
Q 021210          144 W---LGNRKRILVLNREDMISMAD-RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALAS  202 (316)
Q Consensus       144 ~---l~~k~~IlVlNK~DLv~~~~-~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l~~  202 (316)
                      +   +..+|+++|+||+|+.+..+ .+++.+.+.. ...++++||+++.|+++|.+.+.+...
T Consensus       268 ~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~-~~~v~~iSA~tg~gi~eL~~~l~~~l~  329 (342)
T 1lnz_A          268 YNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTD-DYPVFPISAVTREGLRELLFEVANQLE  329 (342)
T ss_dssp             SCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCS-CCCBCCCSSCCSSTTHHHHHHHHHHHT
T ss_pred             hhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhc-CCCEEEEECCCCcCHHHHHHHHHHHHh
Confidence            2   23689999999999986543 2223222211 156889999999999999888766543

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=98.41  E-value=1.9e-07  Score=80.05  Aligned_cols=97  Identities=10%  Similarity=-0.006  Sum_probs=62.9

Q ss_pred             cccccchHHHHHHHH---HHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-------CCCCEEEEEEccCCCChHhH----
Q 021210          100 VQWYPGHIAKTEKEL---KDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-------GNRKRILVLNREDMISMADR----  165 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l---~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l-------~~k~~IlVlNK~DLv~~~~~----  165 (316)
                      +-++||+ .++.+..   ...+..+|++|+|+|+.+........+..++       .+.|+++|.||+||.+....    
T Consensus        73 i~Dt~G~-~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~  151 (196)
T 3llu_A           73 IWDFPGQ-MDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQ  151 (196)
T ss_dssp             EEECCSS-CCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHH
T ss_pred             EEECCCC-HHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHH
Confidence            4567887 3344444   5778899999999999875211112222222       36799999999999874321    


Q ss_pred             HH----HHHHHH-----hcCceEEEeccccccchhhhHHHHH
Q 021210          166 NA----WATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAK  198 (316)
Q Consensus       166 ~~----~~~~~~-----~~g~~vi~iSa~~g~gi~~L~~~L~  198 (316)
                      ..    ..+.+.     ..+..++.+||++ .|++++.+.+.
T Consensus       152 ~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~  192 (196)
T 3llu_A          152 RDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVV  192 (196)
T ss_dssp             HHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHH
Confidence            11    112222     3456789999999 99988876654

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=98.41  E-value=2e-07  Score=78.91  Aligned_cols=56  Identities=27%  Similarity=0.425  Sum_probs=39.7

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCcc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII  273 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~  273 (316)
                      ..++|+++|.+|||||||+|+|.+.......+..|.+..  .+.. +..+.++||||..
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~Dt~G~~   77 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLE--TLQYKNISFEVWDLGGQT   77 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEE--EEEETTEEEEEEEECCSS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEE--EEEECCEEEEEEECCCCH
Confidence            357899999999999999999987664443333343322  2222 3468899999975

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=98.41  E-value=2.7e-07  Score=78.74  Aligned_cols=58  Identities=29%  Similarity=0.431  Sum_probs=37.9

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCccccc-CCCCCceeeEEEEEeCC---cEEEEeCCCcc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~v-s~~pgtT~~~~~~~~~~---~~~liDTPGi~  273 (316)
                      ..++|+++|.+|||||||+|+|.+...... .+..|++.....+..+.   .+.|+||||..
T Consensus        25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~   86 (192)
T 2il1_A           25 FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE   86 (192)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcH
Confidence            357899999999999999999997653321 22233333344444443   57899999965

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=98.40  E-value=5.8e-07  Score=74.18  Aligned_cols=99  Identities=17%  Similarity=-0.005  Sum_probs=61.8

Q ss_pred             cccccchHHHHHHHHH-HHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh---C--CCCEEEEEEccCCCChHh--HHHHH
Q 021210          100 VQWYPGHIAKTEKELK-DQLKLMDVVIEVRDARIPLSTT--HPLMDQWL---G--NRKRILVLNREDMISMAD--RNAWA  169 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~-~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l---~--~k~~IlVlNK~DLv~~~~--~~~~~  169 (316)
                      +-++||+ .++...+. ..+..+|++++|+|+.++.+..  ...+..+.   .  +.|+++|.||+|+.+..+  .++..
T Consensus        55 i~D~~g~-~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~  133 (169)
T 3q85_A           55 VYDIWEQ-GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGR  133 (169)
T ss_dssp             EECCCCC---------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHH
T ss_pred             EEECCCc-cccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHH
Confidence            3456777 33433333 4578899999999998643221  11222222   1  679999999999974322  22233


Q ss_pred             HHHHhcCceEEEeccccccchhhhHHHHHH
Q 021210          170 TYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       170 ~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      ++....+..++.+||++|.|++++.+.+.+
T Consensus       134 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  163 (169)
T 3q85_A          134 HLAGTLSCKHIETSAALHHNTRELFEGAVR  163 (169)
T ss_dssp             HHHHHTTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred             HHHHHcCCcEEEecCccCCCHHHHHHHHHH
Confidence            344556788999999999999998876654

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=98.40  E-value=4.4e-07  Score=74.01  Aligned_cols=56  Identities=25%  Similarity=0.260  Sum_probs=37.9

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCccc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP  274 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~~  274 (316)
                      .++|+++|.+|||||||+|+|.+...  ....+.++.+.  ..+..+.   .+.++||||...
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~   63 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHF--VDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEE   63 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSS
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcC--ccccCCccceEEEEEEEECCEEEEEEEEECCCchh
Confidence            36899999999999999999997653  22333343332  2233332   367999999753

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=98.40  E-value=8.7e-08  Score=81.94  Aligned_cols=98  Identities=13%  Similarity=0.125  Sum_probs=64.0

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF  172 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~  172 (316)
                      +-++||+. ++.......+..+|++++|+|+.++.+..+  ..+..++     .+.|+++|.||+|+.+....++..+.+
T Consensus        71 i~Dt~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~  149 (190)
T 1m2o_B           71 TFDLGGHI-QARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSAL  149 (190)
T ss_dssp             EEECCCSG-GGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHT
T ss_pred             EEECCCCH-HHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHh
Confidence            44678873 333333455789999999999987643221  1223332     367999999999997632233333333


Q ss_pred             Hh------------cCceEEEeccccccchhhhHHHHH
Q 021210          173 AK------------QGTKVIFSNGQLGMGTMKLSRLAK  198 (316)
Q Consensus       173 ~~------------~g~~vi~iSa~~g~gi~~L~~~L~  198 (316)
                      ..            .+..++++||++|.|++++.+.+.
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~  187 (190)
T 1m2o_B          150 GLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS  187 (190)
T ss_dssp             TCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHH
T ss_pred             CCccccccccccccceEEEEEeECCcCCCHHHHHHHHH
Confidence            21            235688999999999999887754

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=98.40  E-value=5.7e-07  Score=77.74  Aligned_cols=99  Identities=13%  Similarity=0.111  Sum_probs=61.2

Q ss_pred             cccccchHHHHHH-HHHHHHhhcCeEEEEEeCCCCCCCCc---HHHHHHh-------CCCCEEEEEEccCCCChHhHHHH
Q 021210          100 VQWYPGHIAKTEK-ELKDQLKLMDVVIEVRDARIPLSTTH---PLMDQWL-------GNRKRILVLNREDMISMADRNAW  168 (316)
Q Consensus       100 i~~~Pgh~~~~~r-~l~~~i~~aDlIl~VvDar~~~~~~~---~~i~~~l-------~~k~~IlVlNK~DLv~~~~~~~~  168 (316)
                      +-++||+ .++.. .....+..+|++|+|+|+.+......   ..+...+       .+.|+++|.||+|+.+.......
T Consensus        58 i~Dt~G~-~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~  136 (214)
T 2fh5_B           58 LIDLPGH-ESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLI  136 (214)
T ss_dssp             EEECCCC-HHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHH
T ss_pred             EEECCCC-hhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHH
Confidence            5568999 45555 34456899999999999975211111   1122211       15799999999999755332222


Q ss_pred             HHH----HH---------------------------------hc--CceEEEeccccc------cchhhhHHHHHH
Q 021210          169 ATY----FA---------------------------------KQ--GTKVIFSNGQLG------MGTMKLSRLAKA  199 (316)
Q Consensus       169 ~~~----~~---------------------------------~~--g~~vi~iSa~~g------~gi~~L~~~L~~  199 (316)
                      .+.    +.                                 ..  +..++.+||++|      .|++++.+.+.+
T Consensus       137 ~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~  212 (214)
T 2fh5_B          137 QQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAK  212 (214)
T ss_dssp             HHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHH
Confidence            211    11                                 00  345788999999      999999887754

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=98.40  E-value=8.5e-08  Score=81.37  Aligned_cols=100  Identities=10%  Similarity=-0.044  Sum_probs=66.4

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-HHHHHh-----CCCCEEEEEEccCCCChHh--HHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQWL-----GNRKRILVLNREDMISMAD--RNAWATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-~i~~~l-----~~k~~IlVlNK~DLv~~~~--~~~~~~~  171 (316)
                      +-++||+ .++.......+..+|++|+|+|+.++.+.... .+...+     .+.|+++|+||+|+.+..+  .++..++
T Consensus        75 l~Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  153 (189)
T 2gf9_A           75 IWDTAGQ-ERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRL  153 (189)
T ss_dssp             EEECCSC-CSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred             EEeCCCc-HHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHH
Confidence            4567776 33333445667899999999999765322111 111111     2679999999999975422  2233344


Q ss_pred             HHhcCceEEEeccccccchhhhHHHHHHh
Q 021210          172 FAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      ....+..++.+||++|.|++++.+.+.+.
T Consensus       154 ~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  182 (189)
T 2gf9_A          154 ADDLGFEFFEASAKENINVKQVFERLVDV  182 (189)
T ss_dssp             HHHHTCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             HHHcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            45567889999999999999998876554

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=98.40  E-value=1.5e-07  Score=77.53  Aligned_cols=56  Identities=27%  Similarity=0.340  Sum_probs=36.8

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccc--cCCCCCceeeEEEEEeCC---cEEEEeCCCccc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCP--AAPRPGVTRVLKWVRFGK---DLEFLDSPGIIP  274 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~--vs~~pgtT~~~~~~~~~~---~~~liDTPGi~~  274 (316)
                      .++|+++|.+|||||||+|+|.+.....  ......+++.  .+..+.   .+.++||||...
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~~~~Dt~G~~~   63 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQ--VISCDKSICTLQITDTTGSHQ   63 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEE--EEEETTEEEEEEEEECCSCSS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEE--EEEECCEEEEEEEEECCCchh
Confidence            4789999999999999999999764321  1111222222  222222   478999999753

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=97.77  E-value=3.4e-08  Score=85.06  Aligned_cols=98  Identities=15%  Similarity=-0.009  Sum_probs=66.1

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHhC----CCCEEEEEEccCCCChHh---------
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWLG----NRKRILVLNREDMISMAD---------  164 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~~~l~----~k~~IlVlNK~DLv~~~~---------  164 (316)
                      +-++||+ .++.......+.++|++|+|+|+.++.+..+.  .+...+.    +.|+++|+||+|+.+...         
T Consensus        82 i~Dt~G~-~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~  160 (204)
T 3th5_A           82 LWDTAGQ-EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK  160 (204)
Confidence            4578987 55655666778999999999999876543332  2222222    678999999999975421         


Q ss_pred             -----HHHHHHHHHhcCc-eEEEeccccccchhhhHHHHH
Q 021210          165 -----RNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAK  198 (316)
Q Consensus       165 -----~~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~L~  198 (316)
                           .++..++....+. .++.+||++|.|++++.+.+.
T Consensus       161 ~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~  200 (204)
T 3th5_A          161 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI  200 (204)
Confidence                 1112222333444 678999999999999877654

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=98.40  E-value=3.6e-07  Score=76.54  Aligned_cols=56  Identities=23%  Similarity=0.341  Sum_probs=38.7

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee--EEEEEeCC---cEEEEeCCCccc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGIIP  274 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~--~~~~~~~~---~~~liDTPGi~~  274 (316)
                      .++|+++|.+|||||||+|+|.+..  ..+..+.|+..  ...+..+.   .+.++||||...
T Consensus         6 ~~ki~~~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   66 (181)
T 3t5g_A            6 SRKIAILGYRSVGKSSLTIQFVEGQ--FVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDE   66 (181)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSS--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCT
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcCC--CCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchh
Confidence            5789999999999999999999655  23333334333  22333332   467999999754

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=98.40  E-value=3.5e-07  Score=77.34  Aligned_cols=58  Identities=28%  Similarity=0.324  Sum_probs=41.6

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCccc-ccCCCCCceeeEEEEEeCC---cEEEEeCCCccc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFGK---DLEFLDSPGIIP  274 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~-~vs~~pgtT~~~~~~~~~~---~~~liDTPGi~~  274 (316)
                      .++|+++|.+|||||||+|+|.+.... ...+..|++.....+..+.   .+.|+||||...
T Consensus        15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   76 (195)
T 1x3s_A           15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER   76 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchh
Confidence            578999999999999999999976532 2233345555545455433   478999999754

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=98.40  E-value=3e-07  Score=78.24  Aligned_cols=59  Identities=25%  Similarity=0.329  Sum_probs=41.1

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccC-CCCCceeeEEEEEeCC---cEEEEeCCCccc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAA-PRPGVTRVLKWVRFGK---DLEFLDSPGIIP  274 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs-~~pgtT~~~~~~~~~~---~~~liDTPGi~~  274 (316)
                      ..++|+++|.+|||||||+|+|.+....... +..|++.....+..+.   .+.|+||||...
T Consensus        20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   82 (191)
T 2a5j_A           20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES   82 (191)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchh
Confidence            4689999999999999999999976643322 2234444444455543   578999999754

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=98.39  E-value=4.6e-07  Score=75.77  Aligned_cols=56  Identities=20%  Similarity=0.200  Sum_probs=39.8

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEeCC---cEEEEeCCCccc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGIIP  274 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~~~---~~~liDTPGi~~  274 (316)
                      .++|+++|.+|||||||+|+|.+...  ....++|+....  .+..+.   .+.|+||||...
T Consensus        18 ~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   78 (187)
T 2a9k_A           18 LHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED   78 (187)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCC--CCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCC--CCcCCCccceEEEEEEEECCEEEEEEEEECCCCcc
Confidence            57899999999999999999997662  333444444322  233333   578999999653

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=98.39  E-value=2.9e-07  Score=76.62  Aligned_cols=57  Identities=19%  Similarity=0.176  Sum_probs=40.9

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEeCC---cEEEEeCCCccc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGIIP  274 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~~~---~~~liDTPGi~~  274 (316)
                      ..++|+++|.+|||||||+|+|.+..  ..+..++||....  .+..+.   .+.++||||...
T Consensus         8 ~~~~i~v~G~~~~GKssli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~   69 (181)
T 2fn4_A            8 ETHKLVVVGGGGVGKSALTIQFIQSY--FVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEE   69 (181)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSS--CCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCc--CccccCCCcCceEEEEEEECCEEEEEEEEECCCchh
Confidence            35789999999999999999999764  3344555555432  233332   477999999764

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=98.39  E-value=4.1e-07  Score=76.41  Aligned_cols=57  Identities=18%  Similarity=0.359  Sum_probs=40.9

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~  273 (316)
                      ..++|+++|.+|||||||+|+|.+... .....|.++.+.  ..+..+.   .+.++||||..
T Consensus         9 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   70 (186)
T 2bme_A            9 FLFKFLVIGNAGTGKSCLLHQFIEKKF-KDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE   70 (186)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSC-CTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcH
Confidence            357899999999999999999997653 233345555443  3344443   57899999964

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.38  E-value=2.2e-07  Score=80.63  Aligned_cols=100  Identities=12%  Similarity=0.048  Sum_probs=67.1

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HH---HHHHh-CCCCEEEEEEccCCCChHh--HHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PL---MDQWL-GNRKRILVLNREDMISMAD--RNAWATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~---i~~~l-~~k~~IlVlNK~DLv~~~~--~~~~~~~  171 (316)
                      +-++||+ .++.......+..+|++|+|+|+.++.+...  ..   +.... .+.|+++|.||+|+.+..+  .++..++
T Consensus        79 l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~  157 (201)
T 2ew1_A           79 IWDTAGQ-ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEF  157 (201)
T ss_dssp             EEEECCS-GGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHH
T ss_pred             EEECCCc-HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHH
Confidence            4467887 4555556677899999999999986543211  11   11111 2578999999999974322  1222333


Q ss_pred             HHhcCceEEEeccccccchhhhHHHHHHh
Q 021210          172 FAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      ....+..++.+||++|.|++++.+.+...
T Consensus       158 ~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  186 (201)
T 2ew1_A          158 SEAQDMYYLETSAKESDNVEKLFLDLACR  186 (201)
T ss_dssp             HHHHTCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            44556789999999999999988766543

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.38  E-value=4.3e-07  Score=78.08  Aligned_cols=58  Identities=21%  Similarity=0.304  Sum_probs=41.7

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCccc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP  274 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~~  274 (316)
                      ..++|+++|.+|||||||+|+|.+... .....|.++.+.  ..+..+.   .+.|+||||...
T Consensus        19 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   81 (213)
T 3cph_A           19 SIMKILLIGDSGVGKSCLLVRFVEDKF-NPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER   81 (213)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHCCC-CCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCC-CcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHH
Confidence            357899999999999999999997653 334445555443  3344443   578999999754

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=98.38  E-value=4e-07  Score=77.15  Aligned_cols=58  Identities=17%  Similarity=0.239  Sum_probs=42.2

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCccc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP  274 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~~  274 (316)
                      ..++|+++|.+|||||||+|+|.+... .....|++|.+.  ..+..+.   .+.|+||||...
T Consensus        15 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   77 (196)
T 3tkl_A           15 YLFKLLLIGDSGVGKSCLLLRFADDTY-TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER   77 (196)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCC-CSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHh
Confidence            357899999999999999999997653 344456655554  3344433   478999999753

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=98.38  E-value=3.9e-07  Score=75.81  Aligned_cols=100  Identities=6%  Similarity=-0.096  Sum_probs=66.3

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHh-----CCCCEEEEEEccCCCChHh-HHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWL-----GNRKRILVLNREDMISMAD-RNAW  168 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l-----~~k~~IlVlNK~DLv~~~~-~~~~  168 (316)
                      +-++||+ .++.......+..+|++++|+|+.++.+..+     ..+....     .+.|+++|+||+|+.+... .++.
T Consensus        60 i~Dt~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~  138 (177)
T 1wms_A           60 IWDTAGQ-ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEA  138 (177)
T ss_dssp             EEECCCC-GGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHH
T ss_pred             EEeCCCc-hhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHH
Confidence            4567887 4455555577889999999999987542211     1122222     3569999999999974321 2223


Q ss_pred             HHHHH-hcCceEEEeccccccchhhhHHHHHHh
Q 021210          169 ATYFA-KQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       169 ~~~~~-~~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      .++.. ..+..++++||++|.|++++.+.+.+.
T Consensus       139 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  171 (177)
T 1wms_A          139 QAWCRDNGDYPYFETSAKDATNVAAAFEEAVRR  171 (177)
T ss_dssp             HHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHH
Confidence            33333 334779999999999999988766543

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=98.37  E-value=4.2e-07  Score=76.76  Aligned_cols=26  Identities=35%  Similarity=0.516  Sum_probs=23.7

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      ..++|+++|.+|||||||+|+|++..
T Consensus         6 ~~~ki~v~G~~~~GKSsli~~l~~~~   31 (208)
T 3clv_A            6 SSYKTVLLGESSVGKSSIVLRLTKDT   31 (208)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCc
Confidence            36899999999999999999999875

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=98.37  E-value=1.2e-07  Score=81.19  Aligned_cols=100  Identities=12%  Similarity=-0.050  Sum_probs=64.4

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH------HHHHHhCCCCEEEEEEccCCCChHh---------
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP------LMDQWLGNRKRILVLNREDMISMAD---------  164 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~------~i~~~l~~k~~IlVlNK~DLv~~~~---------  164 (316)
                      +-++||+ .++.......+..+|++|+|+|+.++.+..+.      .+.....+.|+++|+||+|+.+...         
T Consensus        72 i~Dt~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~  150 (201)
T 2q3h_A           72 LCDTAGQ-DEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCK  150 (201)
T ss_dssp             EEECCCS-TTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTT
T ss_pred             EEECCCC-HHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccc
Confidence            4466776 22332333467899999999999865432221      1222223789999999999975211         


Q ss_pred             -----HHHHHHHHHhcCc-eEEEeccccccchhhhHHHHHHh
Q 021210          165 -----RNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       165 -----~~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                           .++..++....+. .++.+||++|.|++++.+.+...
T Consensus       151 ~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  192 (201)
T 2q3h_A          151 EKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVA  192 (201)
T ss_dssp             CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHH
Confidence                 1122233334465 78999999999999988776554

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=98.37  E-value=1.2e-07  Score=81.98  Aligned_cols=99  Identities=15%  Similarity=-0.031  Sum_probs=66.1

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHH----hCCCCEEEEEEccCCCChHhH--------
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQW----LGNRKRILVLNREDMISMADR--------  165 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~~~----l~~k~~IlVlNK~DLv~~~~~--------  165 (316)
                      +-++||+ .++.......+..+|++++|+|+.++.+..+.  .+...    ..+.|+++|+||+|+.+..+.        
T Consensus        82 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  160 (204)
T 4gzl_A           82 LWDTAGL-EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK  160 (204)
T ss_dssp             EEEECCS-GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTT
T ss_pred             EEECCCc-hhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccc
Confidence            5567887 44444445567899999999999875433221  12222    237899999999999764321        


Q ss_pred             ------HHHHHHHHhcC-ceEEEeccccccchhhhHHHHHH
Q 021210          166 ------NAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       166 ------~~~~~~~~~~g-~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                            ++..++....+ ..++++||++|.|++++.+.+.+
T Consensus       161 ~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~  201 (204)
T 4gzl_A          161 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR  201 (204)
T ss_dssp             CCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHH
Confidence                  12223334445 35899999999999998877654

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=98.37  E-value=5.2e-07  Score=77.04  Aligned_cols=57  Identities=21%  Similarity=0.224  Sum_probs=40.7

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCccc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP  274 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~~  274 (316)
                      ..++|+++|.+|||||||+|+|.+...  ....++|+.+.  ..+..+.   .+.|+||||...
T Consensus        13 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   74 (206)
T 2bov_A           13 ALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED   74 (206)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCC--CTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCccceEEEEEEEECCEEEEEEEEcCCChhh
Confidence            357899999999999999999997662  33444554443  2233443   578999999753

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=98.37  E-value=3.9e-07  Score=77.38  Aligned_cols=57  Identities=16%  Similarity=0.205  Sum_probs=38.8

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCccccc--CCCCCceeeEEEEEe-CCcEEEEeCCCccc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPA--APRPGVTRVLKWVRF-GKDLEFLDSPGIIP  274 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~v--s~~pgtT~~~~~~~~-~~~~~liDTPGi~~  274 (316)
                      ...+|+++|.+|||||||+|+|.+.....+  .+..|.+..  .+.. ...+.|+||||...
T Consensus        16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~~   75 (199)
T 4bas_A           16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TFEKGRVAFTVFDMGGAKK   75 (199)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EEEETTEEEEEEEECCSGG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EEEeCCEEEEEEECCCCHh
Confidence            356899999999999999999998775554  343443322  2222 34688999999853

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=98.37  E-value=3e-07  Score=79.71  Aligned_cols=60  Identities=20%  Similarity=0.202  Sum_probs=41.8

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCccc-ccCCCCCceeeEEEEEeC----CcEEEEeCCCcccC
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFG----KDLEFLDSPGIIPM  275 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~-~vs~~pgtT~~~~~~~~~----~~~~liDTPGi~~~  275 (316)
                      ..++|+++|.+|||||||+|+|++.... ......+++.....+...    ..+.++||||....
T Consensus        10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   74 (218)
T 4djt_A           10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKK   74 (218)
T ss_dssp             CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGT
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhh
Confidence            3579999999999999999999965532 223444555444433332    23789999998644

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=98.37  E-value=3.5e-07  Score=79.06  Aligned_cols=55  Identities=24%  Similarity=0.301  Sum_probs=40.9

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEeC----CcEEEEeCCCcc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFG----KDLEFLDSPGII  273 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~~----~~~~liDTPGi~  273 (316)
                      .++|+++|.+|||||||+|+|.+..  .....+.++.+...+..+    ..+.++||||..
T Consensus         7 ~~ki~vvG~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~   65 (214)
T 2fh5_B            7 QRAVLFVGLCDSGKTLLFVRLLTGQ--YRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHE   65 (214)
T ss_dssp             -CEEEEECSTTSSHHHHHHHHHHSC--CCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC--cccccCCcceeeEEEEecCCCccEEEEEECCCCh
Confidence            4689999999999999999999765  233445555555445553    248999999975

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=98.37  E-value=5.1e-07  Score=76.31  Aligned_cols=55  Identities=25%  Similarity=0.270  Sum_probs=37.7

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~  273 (316)
                      .++|+++|.+|||||||+|+|.+...  .....+|+.+.  ..+..+.   .+.|+||||..
T Consensus        21 ~~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~   80 (190)
T 3con_A           21 EYKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE   80 (190)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC--
T ss_pred             eeEEEEECcCCCCHHHHHHHHHcCCC--ccccCCccceEEEEEEEECCEEEEEEEEECCChH
Confidence            57899999999999999999997653  23344454432  2233332   37899999964

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=98.36  E-value=2.6e-07  Score=78.98  Aligned_cols=56  Identities=21%  Similarity=0.246  Sum_probs=41.0

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCccc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGIIP  274 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~~  274 (316)
                      ..+|+++|.+|||||||+|+|.+.......+..+.+..  .+.. +..+.++||||...
T Consensus        23 ~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~~   79 (190)
T 1m2o_B           23 HGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSE--ELAIGNIKFTTFDLGGHIQ   79 (190)
T ss_dssp             -CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEE--EEEETTEEEEEEECCCSGG
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeE--EEEECCEEEEEEECCCCHH
Confidence            45899999999999999999998765555555555432  2333 34688999999854

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=98.36  E-value=7e-08  Score=82.74  Aligned_cols=101  Identities=10%  Similarity=-0.031  Sum_probs=65.2

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--H---HHHHHh-----CCCCEEEEEEccCCCChHh-HHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--P---LMDQWL-----GNRKRILVLNREDMISMAD-RNAW  168 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~---~i~~~l-----~~k~~IlVlNK~DLv~~~~-~~~~  168 (316)
                      +-++||+ .++.......+..+|++|+|+|+.++.+..+  .   .+....     .+.|+++|+||+|+.+... .+..
T Consensus        61 l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~  139 (207)
T 1vg8_A           61 IWDTAGQ-ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRA  139 (207)
T ss_dssp             EEEECSS-GGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHH
T ss_pred             EEeCCCc-HHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHH
Confidence            3456776 3333333456789999999999987543211  1   122222     3579999999999974322 2223


Q ss_pred             HHHHH-hcCceEEEeccccccchhhhHHHHHHhh
Q 021210          169 ATYFA-KQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (316)
Q Consensus       169 ~~~~~-~~g~~vi~iSa~~g~gi~~L~~~L~~l~  201 (316)
                      .++.. ..+..++.+||++|.|++++.+.+.+..
T Consensus       140 ~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~  173 (207)
T 1vg8_A          140 QAWCYSKNNIPYFETSAKEAINVEQAFQTIARNA  173 (207)
T ss_dssp             HHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             HHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence            33333 3457899999999999999988766543

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=98.36  E-value=1e-06  Score=88.27  Aligned_cols=90  Identities=14%  Similarity=0.048  Sum_probs=59.3

Q ss_pred             CCCcchhhhhhccccCCcceEEEecccc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--C
Q 021210           71 NGSIEAYEEECDWADLDADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--G  146 (316)
Q Consensus        71 ~~~~g~~~e~e~~~~~d~~~~~~~~~~~--~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~  146 (316)
                      .++|-.-.|+|.++|+..+...|.-.-.  -+-++||| ..+..++...+.-+|.+|+|+||..++...-..+.+..  .
T Consensus        73 ~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH-vDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~  151 (548)
T 3vqt_A           73 ATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGH-QDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMR  151 (548)
T ss_dssp             ---------------CTTTEEEEEETTEEEEEECCCCG-GGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHT
T ss_pred             cccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCc-HHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHh
Confidence            5667777799999999988874443322  38899999 88999999999999999999999998866544444443  3


Q ss_pred             CCCEEEEEEccCCCC
Q 021210          147 NRKRILVLNREDMIS  161 (316)
Q Consensus       147 ~k~~IlVlNK~DLv~  161 (316)
                      +.|+++++||+|...
T Consensus       152 ~lp~i~fINK~Dr~~  166 (548)
T 3vqt_A          152 ATPVMTFVNKMDREA  166 (548)
T ss_dssp             TCCEEEEEECTTSCC
T ss_pred             CCceEEEEecccchh
Confidence            789999999999753

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=98.36  E-value=1.5e-07  Score=80.97  Aligned_cols=100  Identities=9%  Similarity=-0.028  Sum_probs=66.2

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHH---HHh-CCCCEEEEEEccCCCChHh--HHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMD---QWL-GNRKRILVLNREDMISMAD--RNAWATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~---~~l-~~k~~IlVlNK~DLv~~~~--~~~~~~~  171 (316)
                      +-++||+ .++.......+..+|++|+|+|+.++.+..+.  .+.   ... .+.|+++|+||+|+.+..+  .+...++
T Consensus        61 l~Dt~G~-~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  139 (206)
T 2bcg_Y           61 IWDTAGQ-ERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEF  139 (206)
T ss_dssp             EECCTTT-TTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHH
T ss_pred             EEeCCCh-HHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHH
Confidence            4467776 33434445667899999999999875432211  111   111 2578999999999976422  2223334


Q ss_pred             HHhcCceEEEeccccccchhhhHHHHHHh
Q 021210          172 FAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      ....+..++++||++|.|++++.+.+...
T Consensus       140 ~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  168 (206)
T 2bcg_Y          140 ADANKMPFLETSALDSTNVEDAFLTMARQ  168 (206)
T ss_dssp             HHHTTCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            44567889999999999999998776554

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=98.36  E-value=4.5e-07  Score=77.63  Aligned_cols=56  Identities=20%  Similarity=0.335  Sum_probs=39.9

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEeCC---cEEEEeCCCcc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~~~---~~~liDTPGi~  273 (316)
                      .++|+++|.+|||||||+|+|.+... .....|.++.+..  .+..+.   .+.|+||||..
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   68 (207)
T 1vg8_A            8 LLKVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE   68 (207)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCC-CSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSG
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcH
Confidence            57899999999999999999997653 2333444444432  333332   57899999974

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=98.35  E-value=3.9e-07  Score=75.84  Aligned_cols=59  Identities=19%  Similarity=0.242  Sum_probs=39.0

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccc-cCCCCCceeeEEEEEeC----CcEEEEeCCCccc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFG----KDLEFLDSPGIIP  274 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~-vs~~pgtT~~~~~~~~~----~~~~liDTPGi~~  274 (316)
                      ..++|+++|.+|||||||+|+|.+..... ..+..|.......+..+    ..+.++||||...
T Consensus         5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~   68 (178)
T 2hxs_A            5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTI   68 (178)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCT
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCcc
Confidence            45789999999999999999999765321 11122222222333443    2588999999754

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=98.35  E-value=2.2e-07  Score=80.05  Aligned_cols=56  Identities=23%  Similarity=0.303  Sum_probs=36.5

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCccc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGIIP  274 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~~  274 (316)
                      ..+|+++|.+|||||||+|+|.+.......+..|.+..  .+.. +..+.++||||...
T Consensus        25 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~--~~~~~~~~l~i~Dt~G~~~   81 (198)
T 1f6b_A           25 TGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSE--ELTIAGMTFTTFDLGGHIQ   81 (198)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCE--EEEETTEEEEEEEECC---
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeE--EEEECCEEEEEEECCCcHh
Confidence            46899999999999999999998765444444555533  2333 34688999999653

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=98.35  E-value=3.1e-07  Score=77.30  Aligned_cols=84  Identities=14%  Similarity=0.064  Sum_probs=59.0

Q ss_pred             HHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHHHhcCceEEEeccccc
Q 021210          113 ELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLG  187 (316)
Q Consensus       113 ~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~~vi~iSa~~g  187 (316)
                      .....+..+|++++|+|+.++.+.....+...+     .+.|+++|+||+|+.+...  ++   ....+..++++||++|
T Consensus        76 ~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~--~~---~~~~~~~~~~~SA~~g  150 (172)
T 2gj8_A           76 RAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETL--GM---SEVNGHALIRLSARTG  150 (172)
T ss_dssp             HHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC--EE---EEETTEEEEECCTTTC
T ss_pred             HHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchh--hh---hhccCCceEEEeCCCC
Confidence            345668999999999999887765443332222     2579999999999854211  01   1122467899999999


Q ss_pred             cchhhhHHHHHHhh
Q 021210          188 MGTMKLSRLAKALA  201 (316)
Q Consensus       188 ~gi~~L~~~L~~l~  201 (316)
                      .|+++|.+.+.+..
T Consensus       151 ~gv~~l~~~l~~~~  164 (172)
T 2gj8_A          151 EGVDVLRNHLKQSM  164 (172)
T ss_dssp             TTHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999988776543

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=98.34  E-value=3.8e-07  Score=93.02  Aligned_cols=89  Identities=15%  Similarity=0.110  Sum_probs=71.1

Q ss_pred             CCCcchhhhhhccccCCcceEEEecccc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--
Q 021210           71 NGSIEAYEEECDWADLDADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--  146 (316)
Q Consensus        71 ~~~~g~~~e~e~~~~~d~~~~~~~~~~~--~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--  146 (316)
                      .++|-...|+|.++|+..+...|.-.-.  .+-++||| ..+..++...+.-+|.+|+|+||..++...-..+.+...  
T Consensus        40 ~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH-~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~  118 (638)
T 3j25_A           40 TRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGH-MDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM  118 (638)
T ss_dssp             CSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCS-SSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHH
T ss_pred             cccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCc-HHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHc
Confidence            4567777799999999988774443333  37899999 789999999999999999999999998765555544433  


Q ss_pred             CCCEEEEEEccCCC
Q 021210          147 NRKRILVLNREDMI  160 (316)
Q Consensus       147 ~k~~IlVlNK~DLv  160 (316)
                      +.|.++++||+|..
T Consensus       119 ~lp~i~~INKmDr~  132 (638)
T 3j25_A          119 GIPTIFFINKIDQN  132 (638)
T ss_dssp             TCSCEECCEECCSS
T ss_pred             CCCeEEEEeccccc
Confidence            67899999999975

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=98.34  E-value=3.7e-07  Score=75.01  Aligned_cols=55  Identities=18%  Similarity=0.280  Sum_probs=37.4

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCccc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGIIP  274 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~~  274 (316)
                      ++|+++|.+|||||||+|+|.+.....  ..|.+......+.. +..+.++||||...
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~--~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~   56 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT--TIPTIGFNVETVEYKNISFTVWDVGGQDK   56 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC--CCCCSSCCEEEEECSSCEEEEEECCCCGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc--ccCcCceeEEEEEECCEEEEEEEcCCChh
Confidence            479999999999999999998765332  33321112222222 34689999999853

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=98.34  E-value=4.7e-07  Score=77.84  Aligned_cols=58  Identities=17%  Similarity=0.291  Sum_probs=36.0

Q ss_pred             ccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee--EEEEEeCC---cEEEEeCCCcc
Q 021210          215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       215 ~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~--~~~~~~~~---~~~liDTPGi~  273 (316)
                      ...++|+++|.+|||||||+|+|.+.... ....|.++.+  ...+..+.   .+.|+||||..
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~   85 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIENKFK-QDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE   85 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCTTHH
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCC-ccCCCcccceeEEEEEEECCeeeEEEEEcCCCcH
Confidence            34689999999999999999999976532 2233433333  33444443   58899999974

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=98.34  E-value=7.8e-07  Score=74.60  Aligned_cols=57  Identities=23%  Similarity=0.307  Sum_probs=37.8

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee--EEEEEeCCc---EEEEeCCCccc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGKD---LEFLDSPGIIP  274 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~--~~~~~~~~~---~~liDTPGi~~  274 (316)
                      ..++|+++|.+|||||||+|+|.+...  ......++..  ...+..+..   +.++||||...
T Consensus        17 ~~~ki~v~G~~~~GKSsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~   78 (183)
T 3kkq_A           17 PTYKLVVVGDGGVGKSALTIQFFQKIF--VDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEE   78 (183)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCCccceeEEEEEeCCcEEEEEEEECCCchh
Confidence            357899999999999999999997642  2223233322  222333332   56799999754

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.34  E-value=7.2e-07  Score=76.13  Aligned_cols=99  Identities=12%  Similarity=-0.000  Sum_probs=66.7

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHh--CCCCEEEEEEccCCCChHh--HHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWL--GNRKRILVLNREDMISMAD--RNAWAT  170 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l--~~k~~IlVlNK~DLv~~~~--~~~~~~  170 (316)
                      +-++||+..  .......+..+|++++|+|+.++.+..+     ..+....  .+.|+++|+||+|+.+..+  .++..+
T Consensus        80 l~Dt~G~~~--~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~  157 (196)
T 2atv_A           80 ILDTAGQED--TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEK  157 (196)
T ss_dssp             EEECCCCCC--CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred             EEECCCCCc--ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHH
Confidence            556788844  3445567899999999999986543211     1122222  3678999999999975321  122333


Q ss_pred             HHHhcCceEEEecccccc-chhhhHHHHHHh
Q 021210          171 YFAKQGTKVIFSNGQLGM-GTMKLSRLAKAL  200 (316)
Q Consensus       171 ~~~~~g~~vi~iSa~~g~-gi~~L~~~L~~l  200 (316)
                      +....+..++.+||++|. |++++.+.+.+.
T Consensus       158 ~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~  188 (196)
T 2atv_A          158 LATELACAFYECSACTGEGNITEIFYELCRE  188 (196)
T ss_dssp             HHHHHTSEEEECCTTTCTTCHHHHHHHHHHH
T ss_pred             HHHHhCCeEEEECCCcCCcCHHHHHHHHHHH
Confidence            344557889999999999 999988776543

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=98.33  E-value=2.3e-08  Score=99.96  Aligned_cols=134  Identities=19%  Similarity=0.140  Sum_probs=86.1

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCEEEEEEccCCCChHh--HHHHHHHH---
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMAD--RNAWATYF---  172 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~IlVlNK~DLv~~~~--~~~~~~~~---  172 (316)
                      +-++||| ..+...+...+..+|++|+|+|+.++......+....+  .+.|+++|+||+|+.+...  .......+   
T Consensus        56 ~iDTPGh-e~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~  134 (537)
T 3izy_P           56 FLDTPGH-AAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVV  134 (537)
T ss_dssp             CEECSSS-CCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSC
T ss_pred             EEECCCh-HHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhh
Confidence            6688999 55666666778899999999999987655443333333  2679999999999974321  11111111   


Q ss_pred             -Hhc--CceEEEeccccccchhhhHHHHHHhhhhhhhhhcccC-----------C-CccceEEeEeccCCCCcchhH
Q 021210          173 -AKQ--GTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKG-----------L-LPRAVRAGIVGYPNVGKSSLI  234 (316)
Q Consensus       173 -~~~--g~~vi~iSa~~g~gi~~L~~~L~~l~~~~~~~r~~~~-----------~-~~~~~~i~ivG~pNvGKSTLi  234 (316)
                       ...  ...++++||++|.|+++|.+.+..+...........+           . ....+..+.++..+++|+..+
T Consensus       135 ~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~~~~~~~~~~~~~~~~V~e~~~~~g~G~V~~g~V~~G~l~~Gd~v  211 (537)
T 3izy_P          135 CEDYGGDVQAVHVSALTGENMMALAEATIALAEMLELKADPTGAVEGTVIESFTDKGRGPVTTAIIQRGTLRKGSIL  211 (537)
T ss_dssp             CCCSSSSEEECCCCSSSSCSSHHHHHHHHHHHTTCCCCCCSSSSEEEEEEEECCCTTCCCCEEEEEEEECCSSEEEE
T ss_pred             HHhcCCCceEEEEECCCCCCchhHHHHHHHhhhcccccCCCCCCcceeEEEEEEeCCCceEEEEEEecCEEEcCCEE
Confidence             111  1468899999999999999888776542221111000           0 112456678888888887765

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=98.33  E-value=3.7e-07  Score=88.78  Aligned_cols=146  Identities=12%  Similarity=0.082  Sum_probs=86.0

Q ss_pred             CCeeEEecCCCCCcCCCCCC-CCCCCcch--hhhhhccccCCcceEEEecccc-c--cccccchHH------HHHHHHHH
Q 021210           49 APIIQTVGGKQSSWHGGNSN-NSNGSIEA--YEEECDWADLDADLYYWTKSLR-P--VQWYPGHIA------KTEKELKD  116 (316)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~-~~~~~~g~--~~e~e~~~~~d~~~~~~~~~~~-~--i~~~Pgh~~------~~~r~l~~  116 (316)
                      ...|.|+|...-    |+.- ...+..+.  ..++..+.|.|.....+.-.-. +  +-++|||..      ...+.+..
T Consensus        34 ~~kI~IvG~~~v----GKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~  109 (423)
T 3qq5_A           34 RRYIVVAGRRNV----GKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARR  109 (423)
T ss_dssp             CEEEEEECSCST----TTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred             CEEEEEECCCCC----CHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHH
Confidence            346777876321    2211 22233332  2345666777776664443322 2  677899832      12344667


Q ss_pred             HHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChHhHHHHHHHHH-hcCceEEEeccccccchhhh
Q 021210          117 QLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFA-KQGTKVIFSNGQLGMGTMKL  193 (316)
Q Consensus       117 ~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~~~~~~~~~~-~~g~~vi~iSa~~g~gi~~L  193 (316)
                      .+..+|++|+|+|+  ........+...+.  +.|+++|+||+|+.+.... +..+.+. ..+..++++||++|.|+++|
T Consensus       110 ~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~-~~~~~l~~~~g~~v~~vSAktg~gI~eL  186 (423)
T 3qq5_A          110 VFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAE-ELKGLYESRYEAKVLLVSALQKKGFDDI  186 (423)
T ss_dssp             HHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCT-HHHHHSSCCTTCCCCCCSSCCTTSTTTH
T ss_pred             HHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHH-HHHHHHHHHcCCCEEEEECCCCCCHHHH
Confidence            88999999999998  33333333444432  7899999999999865543 2222232 34578899999999999999


Q ss_pred             HHHHHHhh
Q 021210          194 SRLAKALA  201 (316)
Q Consensus       194 ~~~L~~l~  201 (316)
                      .+.+.+..
T Consensus       187 ~~~L~~~l  194 (423)
T 3qq5_A          187 GKTISEIL  194 (423)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHHhh
Confidence            98877654

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=98.33  E-value=5.3e-07  Score=76.53  Aligned_cols=58  Identities=16%  Similarity=0.224  Sum_probs=38.9

Q ss_pred             ccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCcc
Q 021210          215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII  273 (316)
Q Consensus       215 ~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~  273 (316)
                      ...++|+++|.+|||||||+|+|.+.... ....|.+..+...+.. +..+.|+||||..
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~   78 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASGQFN-EDMIPTVGFNMRKITKGNVTIKLWDIGGQP   78 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCC-CSCCCCCSEEEEEEEETTEEEEEEEECCSH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcCCCC-CccCCCCceeEEEEEeCCEEEEEEECCCCH
Confidence            34689999999999999999999976532 1222222222222222 3468899999975

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=98.33  E-value=3.5e-07  Score=89.19  Aligned_cols=58  Identities=22%  Similarity=0.283  Sum_probs=42.7

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccc------------------------------cCCCCCceeeEEEEEe---CC
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP------------------------------AAPRPGVTRVLKWVRF---GK  262 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~------------------------------vs~~pgtT~~~~~~~~---~~  262 (316)
                      ..++|+++|.+|+|||||+|+|+......                              ....+|+|.+.....+   +.
T Consensus        16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~   95 (439)
T 3j2k_7           16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKK   95 (439)
T ss_pred             ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCe
Confidence            35789999999999999999996542211                              1123689998755443   44


Q ss_pred             cEEEEeCCCcc
Q 021210          263 DLEFLDSPGII  273 (316)
Q Consensus       263 ~~~liDTPGi~  273 (316)
                      .+.|+||||..
T Consensus        96 ~~~iiDTPGh~  106 (439)
T 3j2k_7           96 HFTILDAPGHK  106 (439)
T ss_pred             EEEEEECCChH
Confidence            68999999974

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=98.32  E-value=6.7e-07  Score=76.83  Aligned_cols=58  Identities=21%  Similarity=0.236  Sum_probs=41.2

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCccc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP  274 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~~  274 (316)
                      ..++|+++|.+|||||||+|+|.+... .....|.++.+.  ..+..+.   .+.|+||||...
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   69 (206)
T 2bcg_Y            7 YLFKLLLIGNSGVGKSCLLLRFSDDTY-TNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER   69 (206)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCC-CTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTT
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHH
Confidence            357899999999999999999997653 333344444433  3444443   588999999753

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=98.32  E-value=3.7e-07  Score=76.01  Aligned_cols=56  Identities=21%  Similarity=0.322  Sum_probs=35.2

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee--EEEEEeC----CcEEEEeCCCcc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFG----KDLEFLDSPGII  273 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~--~~~~~~~----~~~~liDTPGi~  273 (316)
                      .++|+++|.+|||||||+|+|.+.... ....|.++.+  ...+..+    ..+.++||||..
T Consensus         8 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   69 (182)
T 1ky3_A            8 ILKVIILGDSGVGKTSLMHRYVNDKYS-QQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE   69 (182)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCC-TTC---CCCSCEEEEECCSSSCCEEEEEECCC---
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCcCC-cccCCccceEEEEEEEEEcCCcEEEEEEEECCCCh
Confidence            578999999999999999999976532 2222333333  3333333    247899999953

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=98.32  E-value=2.4e-07  Score=91.04  Aligned_cols=99  Identities=17%  Similarity=0.141  Sum_probs=66.4

Q ss_pred             cccccchHHHHH--------HHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCEEEEEEccCCCChHhHHHHHHH
Q 021210          100 VQWYPGHIAKTE--------KELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~--------r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~IlVlNK~DLv~~~~~~~~~~~  171 (316)
                      +-++||+. ++.        +.....+..+|++|+|+|+.++.+..+..+...+..+|+++|+||+|+.+........+ 
T Consensus       276 liDT~G~~-~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~~piivV~NK~Dl~~~~~~~~~~~-  353 (462)
T 3geh_A          276 VLDTAGIR-ETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKHRPLILVMNKIDLVEKQLITSLEY-  353 (462)
T ss_dssp             ECC---------------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTTSCEEEEEECTTSSCGGGSTTCCC-
T ss_pred             EEECCccc-cchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhccCCcEEEEEECCCCCcchhhHHHHH-
Confidence            55678862 222        22334578899999999999887776667777777899999999999987654321100 


Q ss_pred             HHhcCceEEEeccccccchhhhHHHHHHhh
Q 021210          172 FAKQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (316)
Q Consensus       172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~l~  201 (316)
                      +. .+..++.+||++|.|+++|.+.+.+..
T Consensus       354 ~~-~~~~~i~iSAktg~Gi~eL~~~i~~~~  382 (462)
T 3geh_A          354 PE-NITQIVHTAAAQKQGIDSLETAILEIV  382 (462)
T ss_dssp             CT-TCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             hc-cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            11 235789999999999999988877654

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.31  E-value=9.3e-07  Score=75.42  Aligned_cols=57  Identities=28%  Similarity=0.420  Sum_probs=38.2

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee-EEEEEeCC---cEEEEeCCCccc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV-LKWVRFGK---DLEFLDSPGIIP  274 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~-~~~~~~~~---~~~liDTPGi~~  274 (316)
                      .++|+++|.+|||||||+|+|.+...... ..|.++.. ...+..+.   .+.++||||...
T Consensus        28 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   88 (196)
T 2atv_A           28 EVKLAIFGRAGVGKSALVVRFLTKRFIWE-YDPTLESTYRHQATIDDEVVSMEILDTAGQED   88 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSC-CCTTCCEEEEEEEEETTEEEEEEEEECCCCCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCcc-cCCCCCceEEEEEEECCEEEEEEEEECCCCCc
Confidence            57899999999999999999997653222 11222112 22233332   478999999865

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.31  E-value=2.3e-07  Score=80.10  Aligned_cols=100  Identities=14%  Similarity=0.059  Sum_probs=64.5

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHH----HHHhCCCCEEEEEEccCCCChHhHHH------
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLM----DQWLGNRKRILVLNREDMISMADRNA------  167 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i----~~~l~~k~~IlVlNK~DLv~~~~~~~------  167 (316)
                      +-++||+ .++.......+..+|++|+|+|+.++.+..+  ..+    .....+.|+++|+||+|+.+.....+      
T Consensus        77 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  155 (207)
T 2fv8_A           77 LWDTAGQ-EDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMK  155 (207)
T ss_dssp             EEECTTC-TTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTT
T ss_pred             EEECCCc-HHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcc
Confidence            4467887 3333334456789999999999976532211  112    22223789999999999975432111      


Q ss_pred             --------HHHHHHhcCc-eEEEeccccccchhhhHHHHHHh
Q 021210          168 --------WATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       168 --------~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                              ..++....+. .++.+||++|.|+++|.+.+.+.
T Consensus       156 ~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~  197 (207)
T 2fv8_A          156 QEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRA  197 (207)
T ss_dssp             CCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHH
Confidence                    1122233444 78999999999999998877654

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=98.31  E-value=7.3e-07  Score=74.90  Aligned_cols=57  Identities=18%  Similarity=0.212  Sum_probs=38.0

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE---EEEEeC-C-----------cEEEEeCCCcc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL---KWVRFG-K-----------DLEFLDSPGII  273 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~---~~~~~~-~-----------~~~liDTPGi~  273 (316)
                      ..++|+++|.+|||||||+|+|.+... .....|..+.+.   ..+..+ .           .+.++||||..
T Consensus        10 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   81 (195)
T 3bc1_A           10 YLIKFLALGDSGVGKTSVLYQYTDGKF-NSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLE   81 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCC-CCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSG
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhcCCC-CcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcH
Confidence            357999999999999999999997653 222222222222   223332 1           57899999984

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=98.30  E-value=7.2e-07  Score=77.01  Aligned_cols=57  Identities=23%  Similarity=0.214  Sum_probs=38.7

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEe-CCc--EEEEeCCCccc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKD--LEFLDSPGIIP  274 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~-~~~--~~liDTPGi~~  274 (316)
                      ..++|+++|.+|||||||+|++.+..  ..+...+|+.+...  +.. +..  +.++||||...
T Consensus        29 ~~~ki~vvG~~~~GKSsLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~   90 (204)
T 4gzl_A           29 QAIKCVVVGDGAVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED   90 (204)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHHSC--CCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGG
T ss_pred             CeEEEEEECcCCCCHHHHHHHHHhCC--CCCCcCCeecceeEEEEEECCEEEEEEEEECCCchh
Confidence            35799999999999999999999654  23444556655332  222 333  45999999853

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=98.30  E-value=6.4e-07  Score=74.77  Aligned_cols=56  Identities=23%  Similarity=0.231  Sum_probs=38.5

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEeCC---cEEEEeCCCcc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~~~---~~~liDTPGi~  273 (316)
                      .++|+++|.+|||||||+|+|.+.......+..|.+. ...+..+.   .+.++||||..
T Consensus         7 ~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~   65 (178)
T 2iwr_A            7 ELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQY-KKEMLVDGQTHLVLIREEAGAP   65 (178)
T ss_dssp             EEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEE-EEEEEETTEEEEEEEEECSSSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeE-EEEEEECCEEEEEEEEECCCCc
Confidence            5789999999999999999999876443333233222 22233332   46789999974

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=98.30  E-value=2.9e-07  Score=78.61  Aligned_cols=58  Identities=22%  Similarity=0.214  Sum_probs=18.7

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCcee-e--EEEEEeCC-----cEEEEeCCCcc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR-V--LKWVRFGK-----DLEFLDSPGII  273 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~-~--~~~~~~~~-----~~~liDTPGi~  273 (316)
                      ..++|+++|.+|||||||+|+|.+......+....|+. +  ...+..+.     .+.|+||||..
T Consensus        19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   84 (208)
T 2yc2_C           19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD   84 (208)
T ss_dssp             EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcH
Confidence            35789999999999999999999773223334444443 2  23344433     47899999974

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=98.30  E-value=7e-07  Score=76.28  Aligned_cols=57  Identities=23%  Similarity=0.167  Sum_probs=36.7

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEeCC---cEEEEeCCCccc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGIIP  274 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~~~---~~~liDTPGi~~  274 (316)
                      ..++|+++|.+|||||||+|+|.+..  .....++||.+..  .+..+.   .+.++||||...
T Consensus        19 ~~~ki~~~G~~~~GKssl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   80 (201)
T 2q3h_A           19 RGVKCVLVGDGAVGKTSLVVSYTTNG--YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDE   80 (201)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCSTT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHH
Confidence            46799999999999999999999765  3344555665432  233333   466999999854

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=98.29  E-value=5.7e-07  Score=77.19  Aligned_cols=57  Identities=25%  Similarity=0.327  Sum_probs=38.2

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEe---CCcEEEEeCCCccc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRF---GKDLEFLDSPGIIP  274 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~---~~~~~liDTPGi~~  274 (316)
                      ..++|+++|.+|||||||+|+|.+....  ...+.|+...  ..+..   ...+.|+||||...
T Consensus        23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   84 (201)
T 3oes_A           23 RYRKVVILGYRCVGKTSLAHQFVEGEFS--EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDE   84 (201)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCC--SCCCCCSEEEEEEEEC----CEEEEEEEECCCCT
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEECCCccc
Confidence            3678999999999999999999987643  2223333322  11221   12468999999753

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=98.29  E-value=7.1e-07  Score=78.03  Aligned_cols=58  Identities=21%  Similarity=0.293  Sum_probs=39.0

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccC-CCCCceeeEEEEEeCC---cEEEEeCCCcc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAA-PRPGVTRVLKWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs-~~pgtT~~~~~~~~~~---~~~liDTPGi~  273 (316)
                      ..++|+++|.+|||||||+|+|.+....... +..|++.....+..+.   .+.|+||||..
T Consensus        12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~   73 (223)
T 3cpj_B           12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE   73 (223)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTT
T ss_pred             eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCcc
Confidence            3578999999999999999999976543221 2223333333444443   57899999974

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.28  E-value=1.1e-06  Score=74.50  Aligned_cols=58  Identities=28%  Similarity=0.322  Sum_probs=37.3

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCccccc-CCCCCceeeEEEEEeCC---cEEEEeCCCccc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFGK---DLEFLDSPGIIP  274 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~v-s~~pgtT~~~~~~~~~~---~~~liDTPGi~~  274 (316)
                      ..++|+++|.+|||||||+|+|.+...... .+..+.+.. ..+..+.   .+.|+||||...
T Consensus         7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~   68 (199)
T 2gf0_A            7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQ   68 (199)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGS
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHH
Confidence            357899999999999999999997543211 111121211 1222322   478999999754

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=98.28  E-value=2.8e-07  Score=83.46  Aligned_cols=80  Identities=19%  Similarity=0.111  Sum_probs=57.4

Q ss_pred             hhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChHhHHH-HHHHHHhcCceEEEeccccccchhhhHH
Q 021210          119 KLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNA-WATYFAKQGTKVIFSNGQLGMGTMKLSR  195 (316)
Q Consensus       119 ~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~~~~-~~~~~~~~g~~vi~iSa~~g~gi~~L~~  195 (316)
                      .++|++|+|+|+...  ..+..+...+.  +.|+++|+||+|+........ ..+.....|.+++++||++|.|+++|.+
T Consensus        82 ~~~d~vi~VvDas~~--~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~  159 (256)
T 3iby_A           82 LEYDCIINVIDACHL--ERHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGIPALQQ  159 (256)
T ss_dssp             SCCSEEEEEEEGGGH--HHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTBSHHHHHH
T ss_pred             CCCCEEEEEeeCCCc--hhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCCCHHHHHH
Confidence            789999999999862  22333444443  689999999999875432111 1122334578999999999999999988


Q ss_pred             HHHHh
Q 021210          196 LAKAL  200 (316)
Q Consensus       196 ~L~~l  200 (316)
                      .+.+.
T Consensus       160 ~i~~~  164 (256)
T 3iby_A          160 SLLHC  164 (256)
T ss_dssp             HHHTC
T ss_pred             HHHhh
Confidence            87665

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=98.28  E-value=3.2e-07  Score=92.89  Aligned_cols=102  Identities=19%  Similarity=0.107  Sum_probs=67.9

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCEEEEEEccCCCChH--------------
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMA--------------  163 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~IlVlNK~DLv~~~--------------  163 (316)
                      +-++||| ..+.......+..+|++|+|+|+.++..........++  .+.|+++++||+|+.+..              
T Consensus        74 liDTPGh-e~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~  152 (594)
T 1g7s_A           74 FIDTPGH-EAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSK  152 (594)
T ss_dssp             EECCCTT-SCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTT
T ss_pred             EEECCCc-HHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchHHHHHH
Confidence            4578998 44444444557789999999999987644333333333  367999999999997421              


Q ss_pred             ---h--------HHHHHHHHHhcC---------------ceEEEeccccccchhhhHHHHHHhhh
Q 021210          164 ---D--------RNAWATYFAKQG---------------TKVIFSNGQLGMGTMKLSRLAKALAS  202 (316)
Q Consensus       164 ---~--------~~~~~~~~~~~g---------------~~vi~iSa~~g~gi~~L~~~L~~l~~  202 (316)
                         .        ..+..+.+...+               .+++++||++|.|+++|.+.+..+.+
T Consensus       153 ~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~  217 (594)
T 1g7s_A          153 QDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (594)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence               0        011222233222               36889999999999999988776543

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=98.28  E-value=7.9e-07  Score=73.35  Aligned_cols=56  Identities=20%  Similarity=0.062  Sum_probs=32.7

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCccc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP  274 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~~  274 (316)
                      ++|+++|.+|||||||+|+|.+......... .+|.+.  ..+..+.   .+.++||||...
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   63 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEM-ENSEDTYERRIMVDKEEVTLIVYDIWEQGD   63 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC-------------CEEEEEEEETTEEEEEEEECCCCC--
T ss_pred             EEEEEECCCCCCHHHHHHHHHhccCcccccC-CCcCCeeeEEEEECCeEEEEEEEECCCccc
Confidence            6899999999999999999986554333322 223332  2233332   467999999864

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=98.28  E-value=1.3e-07  Score=82.88  Aligned_cols=100  Identities=10%  Similarity=-0.050  Sum_probs=63.6

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHH---h-CCCCEEEEEEccCCCChHh--HHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQW---L-GNRKRILVLNREDMISMAD--RNAWATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~~~---l-~~k~~IlVlNK~DLv~~~~--~~~~~~~  171 (316)
                      +-++||+ .++.......+..+|++|+|+|+.++.+..+.  .+..+   . .+.|+++|+||+|+.+..+  .++..++
T Consensus        66 i~Dt~G~-~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~  144 (223)
T 3cpj_B           66 IWDTAGQ-ERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTF  144 (223)
T ss_dssp             EECCTTT-TTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHH
T ss_pred             EEECCCc-cchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHH
Confidence            4567887 33444444567899999999999875432211  11111   1 2578999999999975322  1233344


Q ss_pred             HHhcCceEEEeccccccchhhhHHHHHHh
Q 021210          172 FAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      ....+..++.+||++|.|++++.+.+...
T Consensus       145 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  173 (223)
T 3cpj_B          145 AQENQLLFTETSALNSENVDKAFEELINT  173 (223)
T ss_dssp             HHHTTCEEEECCCC-CCCHHHHHHHHHHH
T ss_pred             HHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            45567889999999999999988776544

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=98.28  E-value=2.5e-07  Score=80.72  Aligned_cols=101  Identities=11%  Similarity=0.008  Sum_probs=66.1

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HH----HHHHhCCCCEEEEEEccCCCCh-----------
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PL----MDQWLGNRKRILVLNREDMISM-----------  162 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~----i~~~l~~k~~IlVlNK~DLv~~-----------  162 (316)
                      +-++||+ .++.......+..+|++|+|+|+.++.+..+  ..    +.....+.|+++|.||+|+.+.           
T Consensus        79 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  157 (214)
T 3q3j_B           79 LWDTSGS-PYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQK  157 (214)
T ss_dssp             EEEECCS-GGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTT
T ss_pred             EEECCCC-HhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccc
Confidence            4456776 3344444456789999999999987543322  11    2222236799999999999642           


Q ss_pred             ---HhHHHHHHHHHhcCc-eEEEeccccccc-hhhhHHHHHHhh
Q 021210          163 ---ADRNAWATYFAKQGT-KVIFSNGQLGMG-TMKLSRLAKALA  201 (316)
Q Consensus       163 ---~~~~~~~~~~~~~g~-~vi~iSa~~g~g-i~~L~~~L~~l~  201 (316)
                         ...++..++....+. .++.+||++|.| ++++.+.+....
T Consensus       158 ~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~  201 (214)
T 3q3j_B          158 QAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLC  201 (214)
T ss_dssp             CCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred             cCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHH
Confidence               111222333445566 889999999998 999888766543

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=98.27  E-value=1.8e-06  Score=72.03  Aligned_cols=95  Identities=12%  Similarity=-0.008  Sum_probs=61.1

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHh----CCCCEEEEEEccCCCCh---H-hHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL----GNRKRILVLNREDMISM---A-DRN  166 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l----~~k~~IlVlNK~DLv~~---~-~~~  166 (316)
                      +-++||+..      ...+..+|++|+|+|+.++.+..+.     .+....    .+.|+++|.||+|+.+.   . ..+
T Consensus        58 i~Dt~G~~~------~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~  131 (178)
T 2iwr_A           58 IREEAGAPD------AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDA  131 (178)
T ss_dssp             EEECSSSCC------HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHH
T ss_pred             EEECCCCch------hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHH
Confidence            345677733      3467889999999999876433221     122221    25689999999999421   1 112


Q ss_pred             HHHHHHHhc-CceEEEeccccccchhhhHHHHHHh
Q 021210          167 AWATYFAKQ-GTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       167 ~~~~~~~~~-g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      +..++.... +..++.+||++|.|++++.+.+.+.
T Consensus       132 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~  166 (178)
T 2iwr_A          132 RARALXADMKRCSYYETXATYGLNVDRVFQEVAQK  166 (178)
T ss_dssp             HHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred             HHHHHHHhhcCCeEEEEeccccCCHHHHHHHHHHH
Confidence            222333333 4788999999999999988776543

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.27  E-value=9.9e-07  Score=76.37  Aligned_cols=57  Identities=21%  Similarity=0.340  Sum_probs=39.9

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~  273 (316)
                      ..++|+++|.+|||||||+|+|.+... .....|.++.+.  ..+..+.   .+.++||||..
T Consensus        25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~   86 (201)
T 2ew1_A           25 FLFKIVLIGNAGVGKTCLVRRFTQGLF-PPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE   86 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSC-CTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCCC-CCCCCCccceeEEEEEEEECCEEEEEEEEECCCcH
Confidence            357899999999999999999997653 233334444443  2344433   57899999964

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=98.26  E-value=3.6e-07  Score=78.32  Aligned_cols=57  Identities=18%  Similarity=0.253  Sum_probs=39.7

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee--EEEEEeCC---cEEEEeCCCcc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~--~~~~~~~~---~~~liDTPGi~  273 (316)
                      ..++|+++|.+|||||||+|+|.+... .....|++|.+  ...+..+.   .+.|+||||..
T Consensus        32 ~~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~   93 (199)
T 3l0i_B           32 YLFKLLLIGDSGVGKSCLLLRFADDTY-TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE   93 (199)
T ss_dssp             EEEEEEEECCTTSCCTTTTTSSBCCCC-CCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCT
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCC-CCCcCCcccceEEEEEEEECCEEEEEEEEECCCcH
Confidence            358999999999999999999997653 22223333433  33444443   47899999964

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=98.26  E-value=1.5e-06  Score=90.13  Aligned_cols=63  Identities=19%  Similarity=0.225  Sum_probs=38.7

Q ss_pred             eccccccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccC
Q 021210          182 SNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAA  246 (316)
Q Consensus       182 iSa~~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs  246 (316)
                      .++-.+.|+++|...+.++.........  +..-...+|+++|.+|+|||||+|+|++.....++
T Consensus        18 ~~~~~~~~~~~li~~inkl~d~l~~lg~--~~~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g   80 (772)
T 3zvr_A           18 GSHMGNRGMEDLIPLVNRLQDAFSAIGQ--NADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRG   80 (772)
T ss_dssp             -------CGGGHHHHHHHHHHHHHTTTC--CGGGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCS
T ss_pred             ccccccccHHHHHHHHHHHHHHHHhcCc--cccCCCCEEEEECCCCCcHHHHHHHHhCCCccCcC
Confidence            4556677888888887777553322111  11112358999999999999999999997654444

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.26  E-value=9.4e-07  Score=76.26  Aligned_cols=57  Identities=19%  Similarity=0.193  Sum_probs=36.5

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE-EEEEeCC---cEEEEeCCCccc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGIIP  274 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~-~~~~~~~---~~~liDTPGi~~  274 (316)
                      .++|+++|.+|||||||+|+|.+..... ...|.++... ..+..+.   .+.|+||||...
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   85 (207)
T 2fv8_A           25 RKKLVVVGDGACGKTCLLIVFSKDEFPE-VYVPTVFENYVADIEVDGKQVELALWDTAGQED   85 (207)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSSCC--------CCEEEEEEEETTEEEEEEEEECTTCTT
T ss_pred             CcEEEEECcCCCCHHHHHHHHhcCCCCC-cCCCcccceEEEEEEECCEEEEEEEEECCCcHH
Confidence            4689999999999999999999765322 1123222222 2233333   478999999753

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=98.25  E-value=1.2e-06  Score=76.22  Aligned_cols=56  Identities=20%  Similarity=0.181  Sum_probs=32.7

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~  273 (316)
                      ..++|+++|.+|||||||+|+|.+....  .....|+.+.  ..+..+.   .+.|+||||..
T Consensus        33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~   93 (214)
T 2j1l_A           33 RSVKVVLVGDGGCGKTSLLMVFADGAFP--ESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQD   93 (214)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC----
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCCC--CCCCCccceeEEEEEEECCEEEEEEEEECCCch
Confidence            3579999999999999999999976532  2222333322  2233333   47899999964

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=98.25  E-value=7e-06  Score=68.87  Aligned_cols=91  Identities=20%  Similarity=0.153  Sum_probs=55.9

Q ss_pred             HHHHHHHHHH----HhhcCeEEEEEeCCCCCC-----------CCcHHHHHHh--CCCCEEEEEEccCCCChH--hHHHH
Q 021210          108 AKTEKELKDQ----LKLMDVVIEVRDARIPLS-----------TTHPLMDQWL--GNRKRILVLNREDMISMA--DRNAW  168 (316)
Q Consensus       108 ~~~~r~l~~~----i~~aDlIl~VvDar~~~~-----------~~~~~i~~~l--~~k~~IlVlNK~DLv~~~--~~~~~  168 (316)
                      .++.......    +..+++++.|+|+.....           ..+..+...+  .+.|+++|+||+|+.+..  +.+++
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~  145 (190)
T 2cxx_A           66 ERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFL  145 (190)
T ss_dssp             HHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHH
Confidence            4444444333    455678888888753211           1111222222  368999999999998653  22333


Q ss_pred             HHHHHhcCc-------eEEEeccccccchhhhHHHHHHhh
Q 021210          169 ATYFAKQGT-------KVIFSNGQLGMGTMKLSRLAKALA  201 (316)
Q Consensus       169 ~~~~~~~g~-------~vi~iSa~~g~gi~~L~~~L~~l~  201 (316)
                      .   .+.+.       .++++||++|.|++++.+.+.+..
T Consensus       146 ~---~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~  182 (190)
T 2cxx_A          146 A---EKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVI  182 (190)
T ss_dssp             H---HHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             H---HHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhc
Confidence            3   33342       478999999999999888766543

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=98.25  E-value=9.4e-07  Score=75.12  Aligned_cols=58  Identities=19%  Similarity=0.214  Sum_probs=38.4

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcccC
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIPM  275 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~~~  275 (316)
                      ..++|+++|.+|||||||+|+|.+...  ......|+.+.  ..+.++.   .+.|+||||....
T Consensus        20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~   82 (187)
T 3c5c_A           20 LEVNLAILGRRGAGKSALTVKFLTKRF--ISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTP   82 (187)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---C
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceeeEEEEECCEEEEEEEEECCCCCcc
Confidence            357999999999999999999997652  23344454432  2223332   4679999998643

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=98.25  E-value=4.5e-06  Score=85.49  Aligned_cols=88  Identities=11%  Similarity=-0.027  Sum_probs=63.6

Q ss_pred             CCcchhhhhhccccCCcceEEEecccc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CC
Q 021210           72 GSIEAYEEECDWADLDADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GN  147 (316)
Q Consensus        72 ~~~g~~~e~e~~~~~d~~~~~~~~~~~--~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~  147 (316)
                      +.|-...|.+.++++......+.....  .+-++||| .++...+...+..+|.+++|+|+..+.......+...+  .+
T Consensus        48 ~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~-~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~  126 (665)
T 2dy1_A           48 TTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGY-GDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLG  126 (665)
T ss_dssp             SSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCS-GGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTT
T ss_pred             cccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCc-cchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHcc
Confidence            344445567778888777664443322  26678999 56778888999999999999999887654444443333  27


Q ss_pred             CCEEEEEEccCCC
Q 021210          148 RKRILVLNREDMI  160 (316)
Q Consensus       148 k~~IlVlNK~DLv  160 (316)
                      .|+++|+||+|+.
T Consensus       127 ip~ilv~NKiD~~  139 (665)
T 2dy1_A          127 LPRMVVVTKLDKG  139 (665)
T ss_dssp             CCEEEEEECGGGC
T ss_pred             CCEEEEecCCchh
Confidence            8999999999986

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.24  E-value=2.9e-07  Score=78.29  Aligned_cols=58  Identities=22%  Similarity=0.275  Sum_probs=41.3

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCccc-ccCCCCCceeeEEEEEeCC---cEEEEeCCCcc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~-~vs~~pgtT~~~~~~~~~~---~~~liDTPGi~  273 (316)
                      ..++|+++|.+|||||||+|+|.+.... ...+..|++.....+....   .+.|+||||..
T Consensus        22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~   83 (191)
T 3dz8_A           22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE   83 (191)
T ss_dssp             ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHH
T ss_pred             eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChH
Confidence            4579999999999999999999975522 1223345565555555432   48899999954

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=98.24  E-value=2e-07  Score=80.00  Aligned_cols=101  Identities=11%  Similarity=-0.068  Sum_probs=65.1

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHhC-----CCCEEEEEEccCCCChHh--HHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG-----NRKRILVLNREDMISMAD--RNAWAT  170 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l~-----~k~~IlVlNK~DLv~~~~--~~~~~~  170 (316)
                      +-++||+ .++.......+..+|++|+|+|+.++.+...  ..+..+..     +.|+++|+||+|+.+..+  ..+..+
T Consensus        76 l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~  154 (201)
T 3oes_A           76 LVDTAGQ-DEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKK  154 (201)
T ss_dssp             EEEECCC-CTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             EEECCCc-cchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHH
Confidence            4456775 2333334456788999999999986432211  11112211     569999999999975432  122233


Q ss_pred             HHHhcCceEEEeccccccchhhhHHHHHHhh
Q 021210          171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (316)
Q Consensus       171 ~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l~  201 (316)
                      +....+..++.+||++|.|++++.+.+.+..
T Consensus       155 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i  185 (201)
T 3oes_A          155 LAESWGATFMESSARENQLTQGIFTKVIQEI  185 (201)
T ss_dssp             HHHHHTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            3445677899999999999999887765543

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=98.24  E-value=2.8e-07  Score=77.33  Aligned_cols=56  Identities=16%  Similarity=0.232  Sum_probs=24.3

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEeCC---cEEEEeCCCcc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~~~---~~~liDTPGi~  273 (316)
                      .++|+++|.+|||||||+|+|.+.. ......|+++.+..  .+.++.   .+.|+||||..
T Consensus         8 ~~ki~v~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   68 (183)
T 2fu5_C            8 LFKLLLIGDSGVGKTCVLFRFSEDA-FNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE   68 (183)
T ss_dssp             EEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC----
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCCh
Confidence            5789999999999999999999654 23333454554432  334433   57899999964

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=98.24  E-value=8.6e-07  Score=74.15  Aligned_cols=56  Identities=20%  Similarity=0.165  Sum_probs=37.3

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEeCC---cEEEEeCCCccc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGIIP  274 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~~~---~~~liDTPGi~~  274 (316)
                      .++|+++|.+|||||||+|+|.+...  ......|+.+..  .+..+.   .+.++||||...
T Consensus         5 ~~~i~~~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   65 (186)
T 1mh1_A            5 AIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED   65 (186)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSSC--CSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGG
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCC--CCCcCCcccceeEEEEEECCEEEEEEEEECCCCHh
Confidence            57899999999999999999996542  222233333321  222322   356999999853

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=98.23  E-value=1.3e-06  Score=75.05  Aligned_cols=57  Identities=21%  Similarity=0.197  Sum_probs=39.5

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE-EEEEeCC---cEEEEeCCCcc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~-~~~~~~~---~~~liDTPGi~  273 (316)
                      ..++|+++|.+|||||||+|+|.+.... ....|.++.+. ..+..+.   .+.|+||||..
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~   84 (201)
T 2gco_A           24 IRKKLVIVGDGACGKTCLLIVFSKDQFP-EVYVPTVFENYIADIEVDGKQVELALWDTAGQE   84 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCC-SSCCCSSCCCCEEEEEETTEEEEEEEECCCCSG
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCcCC-cccCCcccceEEEEEEECCEEEEEEEEECCCch
Confidence            4578999999999999999999976532 22234433332 2233433   57899999974

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=98.23  E-value=5.4e-08  Score=83.54  Aligned_cols=99  Identities=12%  Similarity=0.028  Sum_probs=56.8

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHhC----CCCEEEEEEccCCCChHhH--HHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWLG----NRKRILVLNREDMISMADR--NAWATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~~~l~----~k~~IlVlNK~DLv~~~~~--~~~~~~  171 (316)
                      +-++||+ .++.......+..+|++|+|+|+.++.+..+.  .+..+..    +.|+++|+||+|+.+..+.  .+..++
T Consensus        86 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~  164 (199)
T 3l0i_B           86 IWDTAGQ-ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEF  164 (199)
T ss_dssp             EECCTTC-TTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHH
T ss_pred             EEECCCc-HhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHH
Confidence            4578886 33444444567899999999999875432111  1111111    5789999999999754321  112233


Q ss_pred             HHhcCceEEEeccccccchhhhHHHHHH
Q 021210          172 FAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      ....+..++++||++|.|++++.+.+.+
T Consensus       165 ~~~~~~~~~~vSA~~g~gv~~l~~~l~~  192 (199)
T 3l0i_B          165 ADSLGIPFLETSAKNATNVEQSFMTMAA  192 (199)
T ss_dssp             HHTTTCCBCCCCC---HHHHHHHHHHTT
T ss_pred             HHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4455678899999999999988776543

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=98.22  E-value=1.2e-06  Score=74.44  Aligned_cols=56  Identities=20%  Similarity=0.256  Sum_probs=37.9

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeC-C--cEEEEeCCCcc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG-K--DLEFLDSPGII  273 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~-~--~~~liDTPGi~  273 (316)
                      ..++|+++|.+|||||||+|+|.+...  ......|+...  ..+..+ .  .+.++||||..
T Consensus        22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~   82 (194)
T 3reg_A           22 KALKIVVVGDGAVGKTCLLLAFSKGEI--PTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQE   82 (194)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred             eeeEEEEECcCCCCHHHHHHHHhcCCC--CCccCCeeeeeeEEEEEECCEEEEEEEEECCCcH
Confidence            368999999999999999999997662  22333333332  122222 2  35899999964

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=98.22  E-value=6e-06  Score=78.03  Aligned_cols=85  Identities=12%  Similarity=0.079  Sum_probs=61.3

Q ss_pred             HhhcCeEEEEEeCCCCCCCC-c--HHHHH-H---hCCCCEEEEEEccCCCChHhHHHHHHHHHhcCceEEEeccccccch
Q 021210          118 LKLMDVVIEVRDARIPLSTT-H--PLMDQ-W---LGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGT  190 (316)
Q Consensus       118 i~~aDlIl~VvDar~~~~~~-~--~~i~~-~---l~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~~vi~iSa~~g~gi  190 (316)
                      ...+|.+|+|+|+..+.... .  ..+.. +   ..++|+++|+||+|+.+..+.++..+.+...+.+++++||++|.|+
T Consensus       244 ~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi  323 (357)
T 2e87_A          244 RYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTGI  323 (357)
T ss_dssp             GGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTTBTH
T ss_pred             HhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCCcCH
Confidence            45699999999987654211 1  11211 1   2378999999999999876655555555566778999999999999


Q ss_pred             hhhHHHHHHhhh
Q 021210          191 MKLSRLAKALAS  202 (316)
Q Consensus       191 ~~L~~~L~~l~~  202 (316)
                      ++|.+.+.+...
T Consensus       324 ~~l~~~i~~~l~  335 (357)
T 2e87_A          324 DLVKEEIIKTLR  335 (357)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999887766543

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=98.22  E-value=6.4e-07  Score=76.99  Aligned_cols=57  Identities=21%  Similarity=0.138  Sum_probs=39.3

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCccc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP  274 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~~  274 (316)
                      .++|+++|.+|||||||+|+|.+... .....|++|.+.  ..+.++.   .+.++||||...
T Consensus        23 ~~ki~vvG~~~vGKSsLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~   84 (195)
T 3cbq_A           23 IFKVMLVGESGVGKSTLAGTFGGLQG-DSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGD   84 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHTCCEEC-CGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSG
T ss_pred             EEEEEEECCCCCCHHHHHHHHHhccC-CccCCCCcccceEEEEEEECCEEEEEEEEecCCCcc
Confidence            57899999999999999999986432 223445555443  2233333   356889999853

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=98.22  E-value=1.2e-06  Score=75.45  Aligned_cols=57  Identities=18%  Similarity=0.256  Sum_probs=36.4

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee--EEEEEeCC---cEEEEeCCCcc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~--~~~~~~~~---~~~liDTPGi~  273 (316)
                      ..++|+++|.+|||||||+|+|.+.... ....|.++.+  ...+..+.   .+.|+||||..
T Consensus        28 ~~~ki~vvG~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~   89 (201)
T 2hup_A           28 FLFKLVLVGDASVGKTCVVQRFKTGAFS-ERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE   89 (201)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSCC-----------CEEEEEEEETTEEEEEEEECCTTCG
T ss_pred             cceEEEEECcCCCCHHHHHHHHhhCCCC-CCCCCCcceEEEEEEEEECCEEEEEEEEECCCcH
Confidence            3579999999999999999999876532 1222222223  23344443   68899999974

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=98.22  E-value=3.7e-07  Score=92.68  Aligned_cols=58  Identities=26%  Similarity=0.349  Sum_probs=42.6

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCC------------------------------CCCceeeEEEEEe---CC
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAP------------------------------RPGVTRVLKWVRF---GK  262 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~------------------------------~pgtT~~~~~~~~---~~  262 (316)
                      ..++|+++|.+|+|||||+|+|++........                              .+|+|.+.....+   +.
T Consensus       166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~~  245 (611)
T 3izq_1          166 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA  245 (611)
T ss_dssp             CCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSSC
T ss_pred             CceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCCc
Confidence            46899999999999999999998653322211                              2688887543322   45


Q ss_pred             cEEEEeCCCcc
Q 021210          263 DLEFLDSPGII  273 (316)
Q Consensus       263 ~~~liDTPGi~  273 (316)
                      .+.|+||||..
T Consensus       246 ~~~iiDTPG~e  256 (611)
T 3izq_1          246 NFTIVDAPGHR  256 (611)
T ss_dssp             EEEEEECCSSS
T ss_pred             eEEEEECCCCc
Confidence            78999999974

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=98.22  E-value=1e-06  Score=83.37  Aligned_cols=85  Identities=14%  Similarity=0.059  Sum_probs=57.7

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCEEEEEEccCCCChHhHHHHHHHHHh----c-------CceEEEecc
Q 021210          116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAK----Q-------GTKVIFSNG  184 (316)
Q Consensus       116 ~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~IlVlNK~DLv~~~~~~~~~~~~~~----~-------g~~vi~iSa  184 (316)
                      ..+..+|++|+|+|+......  ..+...+..+|.++|+||+|+.+........+.+.+    .       +.+++++||
T Consensus       188 ~~~~~aD~vl~V~d~~~~~~~--~~l~~~~~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA  265 (355)
T 3p32_A          188 AVANMVDTFVLLTLARTGDQL--QGIKKGVLELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSA  265 (355)
T ss_dssp             HHHTTCSEEEEEEESSTTCTT--TTCCTTSGGGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBG
T ss_pred             HHHHhCCEEEEEECCCCCccH--HHHHHhHhhcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEc
Confidence            346999999999998654322  111122234689999999999765443333333322    1       357899999


Q ss_pred             ccccchhhhHHHHHHhhh
Q 021210          185 QLGMGTMKLSRLAKALAS  202 (316)
Q Consensus       185 ~~g~gi~~L~~~L~~l~~  202 (316)
                      ++|.|+++|.+.+.+...
T Consensus       266 ~~g~Gi~~L~~~i~~~~~  283 (355)
T 3p32_A          266 VEGRGLAELWDTVERHRQ  283 (355)
T ss_dssp             GGTBSHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            999999999988776643

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=98.21  E-value=7.2e-07  Score=76.46  Aligned_cols=57  Identities=18%  Similarity=0.077  Sum_probs=36.3

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~  273 (316)
                      .++|+++|.+|||||||+|++.+.....++..+.++.+.  ..+.++.   .+.++||+|..
T Consensus         6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~   67 (192)
T 2cjw_A            6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK   67 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC-
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCc
Confidence            478999999999999999999975433334444333332  2334433   34689999964

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=98.21  E-value=8.1e-07  Score=75.94  Aligned_cols=57  Identities=19%  Similarity=0.292  Sum_probs=35.6

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCccc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGIIP  274 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~~  274 (316)
                      ..++|+++|.+|||||||+|+|.+.......+..|  .....+.. +..+.++||||...
T Consensus        28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~--~~~~~~~~~~~~~~i~Dt~G~~~   85 (192)
T 2b6h_A           28 KQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEYKNICFTVWDVGGQDK   85 (192)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETT--EEEEEEEETTEEEEEEECC----
T ss_pred             CccEEEEECCCCCCHHHHHHHHHhCCccccCCcCc--eeEEEEEECCEEEEEEECCCCHh
Confidence            35789999999999999999998765432222112  11122222 34688999999854

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=98.20  E-value=9.9e-08  Score=94.67  Aligned_cols=99  Identities=15%  Similarity=0.088  Sum_probs=67.2

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCEEEEEEccCCCChH--hHHHHHH---HH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMA--DRNAWAT---YF  172 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~IlVlNK~DLv~~~--~~~~~~~---~~  172 (316)
                      +-++||| ..+...+...+..+|++|+|+|+.++......+....+  .+.|+++++||+|+.+..  .......   .+
T Consensus        55 ~iDTPGh-e~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~  133 (501)
T 1zo1_I           55 FLDTPGH-AAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQYGIL  133 (501)
T ss_dssp             EECCCTT-TCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCC
T ss_pred             EEECCCc-HHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHHHHHHHHHhhhh
Confidence            6678999 55666566678899999999999987654433333332  377899999999997532  1110000   00


Q ss_pred             -HhcC--ceEEEeccccccchhhhHHHHHH
Q 021210          173 -AKQG--TKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       173 -~~~g--~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                       ...+  ..++++||++|.|+++|.+.+..
T Consensus       134 ~~~~~~~~~~v~vSAktG~gI~eLle~I~~  163 (501)
T 1zo1_I          134 PEEWGGESQFVHVSAKAGTGIDELLDAILL  163 (501)
T ss_dssp             TTCCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred             HHHhCCCccEEEEeeeeccCcchhhhhhhh
Confidence             1112  47899999999999999887653

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.20  E-value=5.2e-07  Score=78.20  Aligned_cols=55  Identities=25%  Similarity=0.358  Sum_probs=39.9

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCccccc--CCCCCceeeEEEEEeCCcEEEEeCCCcccC
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPA--APRPGVTRVLKWVRFGKDLEFLDSPGIIPM  275 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~v--s~~pgtT~~~~~~~~~~~~~liDTPGi~~~  275 (316)
                      ..+|+++|.+|||||||+|+|.+......  +..|+++.+.    ....+.++||||....
T Consensus        12 ~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~l~Dt~G~~~~   68 (218)
T 1nrj_B           12 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----DGSGVTLVDFPGHVKL   68 (218)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG----GGSSCEEEECCCCGGG
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe----eCceEEEEECCCcHHH
Confidence            56899999999999999999997653222  3334444333    2446899999999643

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=98.20  E-value=2.2e-06  Score=72.83  Aligned_cols=94  Identities=10%  Similarity=-0.032  Sum_probs=60.6

Q ss_pred             ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHHH-HHh-----CCCCEEEEEEccCCCChH----hHHHHH
Q 021210          101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLMD-QWL-----GNRKRILVLNREDMISMA----DRNAWA  169 (316)
Q Consensus       101 ~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-~~i~-~~l-----~~k~~IlVlNK~DLv~~~----~~~~~~  169 (316)
                      -++||+. ++.     .+..+|++++|+|+.++.+..+ ..+. .+.     .+.|+++|.||+|+....    ..++..
T Consensus        72 ~Dt~G~~-~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~  145 (184)
T 3ihw_A           72 RDEGGPP-ELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRAR  145 (184)
T ss_dssp             EECSSSC-CHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHH
T ss_pred             EECCCCh-hhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHH
Confidence            4567762 222     6778999999999987543222 1122 221     246899999999994211    122233


Q ss_pred             HHHHhcC-ceEEEeccccccchhhhHHHHHHh
Q 021210          170 TYFAKQG-TKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       170 ~~~~~~g-~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      ++..+.+ ..++.+||++|.|++++.+.+.+.
T Consensus       146 ~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~  177 (184)
T 3ihw_A          146 KLSTDLKRCTYYETCATYGLNVERVFQDVAQK  177 (184)
T ss_dssp             HHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred             HHHHHcCCCeEEEecCCCCCCHHHHHHHHHHH
Confidence            3444555 788999999999999988766543

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=98.20  E-value=5.4e-07  Score=88.83  Aligned_cols=58  Identities=26%  Similarity=0.361  Sum_probs=40.9

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCc------------------------------ccccCCCCCceeeEEEEEe---CCc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRR------------------------------MCPAAPRPGVTRVLKWVRF---GKD  263 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~------------------------------~~~vs~~pgtT~~~~~~~~---~~~  263 (316)
                      .++|+++|.+|+|||||+|+|++..                              .......+|+|.+.....+   +..
T Consensus        33 ~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~  112 (483)
T 3p26_A           33 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRAN  112 (483)
T ss_dssp             EEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSCE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCce
Confidence            5789999999999999999997541                              1122334688888654443   446


Q ss_pred             EEEEeCCCccc
Q 021210          264 LEFLDSPGIIP  274 (316)
Q Consensus       264 ~~liDTPGi~~  274 (316)
                      +.|+||||...
T Consensus       113 ~~iiDTPG~~~  123 (483)
T 3p26_A          113 FTIVDAPGHRD  123 (483)
T ss_dssp             EEEECCCCCGG
T ss_pred             EEEEECCCcHH
Confidence            89999999853

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=98.20  E-value=3.8e-06  Score=72.08  Aligned_cols=97  Identities=16%  Similarity=-0.031  Sum_probs=62.4

Q ss_pred             cccchHHHHHHHH-HHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----CCCCEEEEEEccCCCChHh--HHHHHHH
Q 021210          102 WYPGHIAKTEKEL-KDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISMAD--RNAWATY  171 (316)
Q Consensus       102 ~~Pgh~~~~~r~l-~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l-----~~k~~IlVlNK~DLv~~~~--~~~~~~~  171 (316)
                      +++|.. ++...+ ...+..+|++|+|+|+.++.+..  ...+..+.     .+.|+++|.||+|+.+..+  .++..++
T Consensus        78 Dt~g~~-~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~  156 (195)
T 3cbq_A           78 DIWEQG-DAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHL  156 (195)
T ss_dssp             CCCCCS-GGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHH
T ss_pred             ecCCCc-cchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHH
Confidence            566662 222222 24578899999999997653221  11222221     2679999999999975321  2233333


Q ss_pred             HHhcCceEEEeccccccchhhhHHHHHH
Q 021210          172 FAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      ....+..++.+||++|.|++++.+.+.+
T Consensus       157 a~~~~~~~~e~Sa~~~~~v~~lf~~l~~  184 (195)
T 3cbq_A          157 AGTLSCKHIETSAALHHNTRELFEGAVR  184 (195)
T ss_dssp             HHHTTCEEEEEBTTTTBSHHHHHHHHHH
T ss_pred             HHHhCCEEEEEcCCCCCCHHHHHHHHHH
Confidence            4455678999999999999998876654

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=98.19  E-value=6.3e-06  Score=78.47  Aligned_cols=103  Identities=16%  Similarity=0.015  Sum_probs=66.8

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH------HHHHHh--CCCCEEEEEEccCCCChHhH--HHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP------LMDQWL--GNRKRILVLNREDMISMADR--NAWA  169 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~------~i~~~l--~~k~~IlVlNK~DLv~~~~~--~~~~  169 (316)
                      +...|.+..+..+.+.+.+..+|++++|+|+.++......      .+...+  .++|+++|+||+|+.+....  .+..
T Consensus       237 i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~  316 (364)
T 2qtf_A          237 IRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLV  316 (364)
T ss_dssp             CSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHH
T ss_pred             hhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHH
Confidence            3334444445566677789999999999999765311111      112222  36899999999999864321  1111


Q ss_pred             -HHHHhc---CceEEEeccccccchhhhHHHHHHhhh
Q 021210          170 -TYFAKQ---GTKVIFSNGQLGMGTMKLSRLAKALAS  202 (316)
Q Consensus       170 -~~~~~~---g~~vi~iSa~~g~gi~~L~~~L~~l~~  202 (316)
                       +.....   +.+++++||++|.|+++|.+.+.++..
T Consensus       317 ~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~  353 (364)
T 2qtf_A          317 EKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLAT  353 (364)
T ss_dssp             HHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhc
Confidence             111222   236789999999999999998877644

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=98.18  E-value=6e-07  Score=82.64  Aligned_cols=100  Identities=17%  Similarity=0.040  Sum_probs=66.6

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc------HHHHHHhCCCCEEEEEEccCCCChHh---------
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH------PLMDQWLGNRKRILVLNREDMISMAD---------  164 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~------~~i~~~l~~k~~IlVlNK~DLv~~~~---------  164 (316)
                      +-++||+ .++.......+..+|++++|+|+.++.+..+      ..+.....+.|+++|+||+|+.+...         
T Consensus       207 l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~  285 (332)
T 2wkq_A          207 LWDTAGL-EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK  285 (332)
T ss_dssp             EEEECCC-GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTT
T ss_pred             EEeCCCc-hhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccc
Confidence            4567887 3444444456789999999999987543222      11222233789999999999965321         


Q ss_pred             -----HHHHHHHHHhcCc-eEEEeccccccchhhhHHHHHHh
Q 021210          165 -----RNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       165 -----~~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                           .++..++....+. .++.+||++|.|++++.+.+.+.
T Consensus       286 ~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  327 (332)
T 2wkq_A          286 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA  327 (332)
T ss_dssp             CCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHH
Confidence                 1122333444564 78999999999999988776543

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=98.18  E-value=6e-07  Score=81.93  Aligned_cols=82  Identities=21%  Similarity=0.100  Sum_probs=56.7

Q ss_pred             HhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChHhHHH-HHHHHHhcCceEEEeccccccchhhhH
Q 021210          118 LKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNA-WATYFAKQGTKVIFSNGQLGMGTMKLS  194 (316)
Q Consensus       118 i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~~~~-~~~~~~~~g~~vi~iSa~~g~gi~~L~  194 (316)
                      ...+|++|+|+|+...  ..+..+...+.  +.|+++|+||+|+.+...... ..+.....|.+++++||++|.|+++|.
T Consensus        83 ~~~~d~ii~VvD~~~~--~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~~g~gi~el~  160 (274)
T 3i8s_A           83 SGDADLLINVVDASNL--ERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALK  160 (274)
T ss_dssp             HTCCSEEEEEEEGGGH--HHHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHHHHHTSCEEECCCGGGHHHHHHH
T ss_pred             hcCCCEEEEEecCCCh--HHHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH
Confidence            4799999999999862  12222322222  789999999999875432111 112223457889999999999999998


Q ss_pred             HHHHHhh
Q 021210          195 RLAKALA  201 (316)
Q Consensus       195 ~~L~~l~  201 (316)
                      +.+.+..
T Consensus       161 ~~i~~~~  167 (274)
T 3i8s_A          161 LAIDRYK  167 (274)
T ss_dssp             HHHHTCC
T ss_pred             HHHHHHH
Confidence            8776553

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=98.18  E-value=2.8e-07  Score=93.21  Aligned_cols=58  Identities=26%  Similarity=0.261  Sum_probs=29.9

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCccccc------------------------------CCCCCceeeEEEEEe---CC
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPA------------------------------APRPGVTRVLKWVRF---GK  262 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~v------------------------------s~~pgtT~~~~~~~~---~~  262 (316)
                      ..++|+++|.+|+|||||+|+|+.......                              ...+|+|++.....+   +.
T Consensus       176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~  255 (592)
T 3mca_A          176 PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKK  255 (592)
T ss_dssp             CEEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCe
Confidence            457899999999999999999975321111                              115688988754443   35


Q ss_pred             cEEEEeCCCcc
Q 021210          263 DLEFLDSPGII  273 (316)
Q Consensus       263 ~~~liDTPGi~  273 (316)
                      .+.|+||||..
T Consensus       256 ~i~iiDTPGh~  266 (592)
T 3mca_A          256 IYEIGDAPGHR  266 (592)
T ss_dssp             ---CCEEESSS
T ss_pred             EEEEEECCChH
Confidence            68899999963

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=98.17  E-value=1.5e-06  Score=73.55  Aligned_cols=56  Identities=23%  Similarity=0.224  Sum_probs=34.0

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCC-CCCceeeEEEEEe--------CCcEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAP-RPGVTRVLKWVRF--------GKDLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~-~pgtT~~~~~~~~--------~~~~~liDTPGi~  273 (316)
                      ++|+++|.+|||||||+|+|.+......+. .|.+..+.....+        ...+.++||||..
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~   67 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGRE   67 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCH
Confidence            579999999999999999999753222222 2333334322211        2357899999974

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=98.17  E-value=1.2e-06  Score=74.51  Aligned_cols=98  Identities=11%  Similarity=-0.035  Sum_probs=63.1

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHh----CCCCEEEEEEccCCCChHh--HHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL----GNRKRILVLNREDMISMAD--RNAW  168 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l----~~k~~IlVlNK~DLv~~~~--~~~~  168 (316)
                      +-++||+. ++. .+...+..+|++++|+|+.++.+..+.     .+....    .+.|+++|.||+|+.+..+  .++.
T Consensus        73 i~Dt~G~~-~~~-~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~  150 (187)
T 3c5c_A           73 VMDTADLD-TPR-NCERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEG  150 (187)
T ss_dssp             EEECCC----CC-CTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHH
T ss_pred             EEECCCCC-cch-hHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHH
Confidence            44677762 222 245678899999999999864322211     111111    4689999999999964321  1223


Q ss_pred             HHHHHhcCceEEEecc-ccccchhhhHHHHHH
Q 021210          169 ATYFAKQGTKVIFSNG-QLGMGTMKLSRLAKA  199 (316)
Q Consensus       169 ~~~~~~~g~~vi~iSa-~~g~gi~~L~~~L~~  199 (316)
                      .++..+.+..++.+|| ++|.|++++.+.+.+
T Consensus       151 ~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~  182 (187)
T 3c5c_A          151 VALAGRFGCLFFEVSACLDFEHVQHVFHEAVR  182 (187)
T ss_dssp             HHHHHHHTCEEEECCSSSCSHHHHHHHHHHHH
T ss_pred             HHHHHHcCCcEEEEeecCccccHHHHHHHHHH
Confidence            3444556788999999 899999998876654

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=98.16  E-value=7e-07  Score=77.33  Aligned_cols=27  Identities=19%  Similarity=0.354  Sum_probs=24.0

Q ss_pred             ccceEEeEeccCCCCcchhHHhhhcCc
Q 021210          215 PRAVRAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       215 ~~~~~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      ...++|+++|.+|||||||+|+|.+..
T Consensus        23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~   49 (217)
T 2f7s_A           23 DYLIKLLALGDSGVGKTTFLYRYTDNK   49 (217)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCSC
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHhcCC
Confidence            346899999999999999999999765

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=98.16  E-value=1.8e-06  Score=73.81  Aligned_cols=59  Identities=17%  Similarity=0.131  Sum_probs=37.6

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe----CCcEEEEeCCCccc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF----GKDLEFLDSPGIIP  274 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~----~~~~~liDTPGi~~  274 (316)
                      ..++|+++|.+|||||||+|.+.++...........|.......+    ...+.|+||||...
T Consensus        19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~   81 (196)
T 3llu_A           19 SKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMD   81 (196)
T ss_dssp             -CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHH
Confidence            357899999999999999999987533221111122222222222    23689999999754

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=98.15  E-value=7e-07  Score=75.40  Aligned_cols=100  Identities=14%  Similarity=0.040  Sum_probs=63.2

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc------HHHHHHhCCCCEEEEEEccCCCChH----------
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH------PLMDQWLGNRKRILVLNREDMISMA----------  163 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~------~~i~~~l~~k~~IlVlNK~DLv~~~----------  163 (316)
                      +-++||+ .++.......+..+|++|+|+|+.++.+..+      ..+.....+.|+++|.||+|+.+..          
T Consensus        59 i~Dt~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  137 (184)
T 1m7b_A           59 LWDTSGS-PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHR  137 (184)
T ss_dssp             EEEECCS-GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTT
T ss_pred             EEECCCC-hhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcc
Confidence            3456776 2333333445789999999999986543221      1122223478999999999997421          


Q ss_pred             ----hHHHHHHHHHhcC-ceEEEeccc-cccchhhhHHHHHHh
Q 021210          164 ----DRNAWATYFAKQG-TKVIFSNGQ-LGMGTMKLSRLAKAL  200 (316)
Q Consensus       164 ----~~~~~~~~~~~~g-~~vi~iSa~-~g~gi~~L~~~L~~l  200 (316)
                          ..++..++..+.+ ..++.+||+ +|.|++++.+.+.+.
T Consensus       138 ~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~  180 (184)
T 1m7b_A          138 QTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLA  180 (184)
T ss_dssp             CCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHH
Confidence                0122223333445 678999998 689999988776543

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=98.15  E-value=1.3e-06  Score=76.68  Aligned_cols=57  Identities=18%  Similarity=0.066  Sum_probs=37.5

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~  273 (316)
                      .++|+++|.+|||||||+|++.+.....+...+.++.+.  ..+.++.   .+.++||+|..
T Consensus        37 ~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~   98 (211)
T 2g3y_A           37 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK   98 (211)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCc
Confidence            478999999999999999999975543344444443332  2333433   35689999953

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=98.14  E-value=2.7e-06  Score=71.74  Aligned_cols=57  Identities=19%  Similarity=0.244  Sum_probs=37.1

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE-EEEEeCC---cEEEEeCCCcc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~-~~~~~~~---~~~liDTPGi~  273 (316)
                      ..++|+++|.+|||||||+|+|.+.... ....|.+.... ..+..+.   .+.++||||..
T Consensus         6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~   66 (184)
T 1m7b_A            6 VKCKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFENYTASFEIDTQRIELSLWDTSGSP   66 (184)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEECSSCEEEEEEEEECCSG
T ss_pred             eEEEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEECCEEEEEEEEECCCCh
Confidence            3578999999999999999999976532 22222222111 1222322   47899999964

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=98.12  E-value=3.9e-06  Score=83.78  Aligned_cols=86  Identities=13%  Similarity=0.059  Sum_probs=57.2

Q ss_pred             hhhhhccccCCcceEEEecccc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEE
Q 021210           77 YEEECDWADLDADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRIL  152 (316)
Q Consensus        77 ~~e~e~~~~~d~~~~~~~~~~~--~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~Il  152 (316)
                      ..|.+.+++++.....+.....  .+-++||| .++...+...+..+|.+|+|+|+..+.......+...+.  +.|+++
T Consensus        61 ~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~-~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiiv  139 (529)
T 2h5e_A           61 EMEKQRGISITTSVMQFPYHDCLVNLLDTPGH-EDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILT  139 (529)
T ss_dssp             ---------CCTTEEEEEETTEEEEEECCCCS-TTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEE
T ss_pred             hhcccCCcceeeeEEEEEECCeEEEEEECCCC-hhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEE
Confidence            3466777787777665554333  27789999 566677888899999999999999876544444444443  679999


Q ss_pred             EEEccCCCChH
Q 021210          153 VLNREDMISMA  163 (316)
Q Consensus       153 VlNK~DLv~~~  163 (316)
                      ++||+|+....
T Consensus       140 viNK~Dl~~~~  150 (529)
T 2h5e_A          140 FMNKLDRDIRD  150 (529)
T ss_dssp             EEECTTSCCSC
T ss_pred             EEcCcCCcccc
Confidence            99999997643

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=98.12  E-value=4.1e-06  Score=75.37  Aligned_cols=80  Identities=10%  Similarity=-0.010  Sum_probs=55.0

Q ss_pred             hcCeEEEEEeCCCC--CCCCc--HHHHHH-----hCCCCEEEEEEccCCCChHhHHHHHHHHHh-cCceEEEeccccccc
Q 021210          120 LMDVVIEVRDARIP--LSTTH--PLMDQW-----LGNRKRILVLNREDMISMADRNAWATYFAK-QGTKVIFSNGQLGMG  189 (316)
Q Consensus       120 ~aDlIl~VvDar~~--~~~~~--~~i~~~-----l~~k~~IlVlNK~DLv~~~~~~~~~~~~~~-~g~~vi~iSa~~g~g  189 (316)
                      ++|++|+|+|+.++  .+..+  ..+..+     ..+.|+++|.||+||.+....++..++... .+..++.+||++|.|
T Consensus       162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~g  241 (255)
T 3c5h_A          162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVN  241 (255)
T ss_dssp             ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBS
T ss_pred             cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCC
Confidence            69999999999876  33221  111111     136899999999999876555444444433 367889999999999


Q ss_pred             hhhhHHHHHH
Q 021210          190 TMKLSRLAKA  199 (316)
Q Consensus       190 i~~L~~~L~~  199 (316)
                      ++++.+.+.+
T Consensus       242 v~elf~~l~~  251 (255)
T 3c5h_A          242 VDLAFSTLVQ  251 (255)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9998877654

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=98.12  E-value=7.3e-07  Score=74.47  Aligned_cols=56  Identities=20%  Similarity=0.149  Sum_probs=31.9

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEe-C--CcEEEEeCCCccc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-G--KDLEFLDSPGIIP  274 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~-~--~~~~liDTPGi~~  274 (316)
                      .++|+++|.+|||||||+|++.+...  ....++|+.+...  +.. +  -.+.++||||...
T Consensus         8 ~~ki~v~G~~~~GKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   68 (182)
T 3bwd_D            8 FIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQED   68 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSCC--C----------CBCCCC-------CEEECCCC-CT
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChh
Confidence            57899999999999999999997652  2233334332111  111 2  2356999999753

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=98.12  E-value=2.6e-06  Score=72.22  Aligned_cols=56  Identities=20%  Similarity=0.168  Sum_probs=38.8

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEeCC---cEEEEeCCCccc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGIIP  274 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~~~---~~~liDTPGi~~  274 (316)
                      .++|+++|.+|||||||+|+|.+...  ......|+.+..  .+..+.   .+.++||||...
T Consensus        18 ~~ki~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~   78 (194)
T 2atx_A           18 MLKCVVVGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED   78 (194)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSSC--CCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCcccceeEEEEEECCEEEEEEEEECCCCcc
Confidence            57899999999999999999997642  233344443321  233332   468999999753

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=98.12  E-value=2.8e-06  Score=73.16  Aligned_cols=57  Identities=16%  Similarity=0.128  Sum_probs=39.2

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEeCC---cEEEEeCCCccc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGIIP  274 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~~~---~~~liDTPGi~~  274 (316)
                      ..++|+++|.+|||||||+|+|.+...  ......|+.+..  .+..+.   .+.|+||||...
T Consensus         8 ~~~ki~i~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   69 (212)
T 2j0v_A            8 KFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQED   69 (212)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCC--CSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCC--CccCCCccceeEEEEEEECCEEEEEEEEECCCcHH
Confidence            357899999999999999999997652  233333443321  223332   578999999853

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=98.12  E-value=8.9e-07  Score=76.83  Aligned_cols=100  Identities=14%  Similarity=0.040  Sum_probs=63.5

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc------HHHHHHhCCCCEEEEEEccCCCChH----------
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH------PLMDQWLGNRKRILVLNREDMISMA----------  163 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~------~~i~~~l~~k~~IlVlNK~DLv~~~----------  163 (316)
                      +-++||+ .++.......+..+|++|+|+|+.++.+..+      ..+.....+.|+++|.||+|+.+..          
T Consensus        80 i~Dt~G~-~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  158 (205)
T 1gwn_A           80 LWDTSGS-PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHR  158 (205)
T ss_dssp             EEEECCS-GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTT
T ss_pred             EEeCCCc-HhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccc
Confidence            4456776 3333333455789999999999986543222      1122223468999999999997421          


Q ss_pred             ----hHHHHHHHHHhcC-ceEEEeccc-cccchhhhHHHHHHh
Q 021210          164 ----DRNAWATYFAKQG-TKVIFSNGQ-LGMGTMKLSRLAKAL  200 (316)
Q Consensus       164 ----~~~~~~~~~~~~g-~~vi~iSa~-~g~gi~~L~~~L~~l  200 (316)
                          ..++..++..+.+ ..++.+||+ +|.|++++.+.+.+.
T Consensus       159 ~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~  201 (205)
T 1gwn_A          159 QTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLA  201 (205)
T ss_dssp             CCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHH
Confidence                0122223333445 578999998 689999988776543

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=97.40  E-value=3.5e-07  Score=78.61  Aligned_cols=56  Identities=23%  Similarity=0.230  Sum_probs=36.9

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEe-CC--cEEEEeCCCccc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GK--DLEFLDSPGIIP  274 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~-~~--~~~liDTPGi~~  274 (316)
                      .++|+++|.+|||||||+|+|.+...  ......||.+...  +.. +.  .+.++||||...
T Consensus        30 ~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~   90 (204)
T 3th5_A           30 AIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED   90 (204)
Confidence            57899999999999999999986542  2233334433211  111 22  356999999753

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=98.11  E-value=7.8e-06  Score=84.09  Aligned_cols=87  Identities=16%  Similarity=0.055  Sum_probs=53.1

Q ss_pred             cchhhhhhccccCCcceEEEecccc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCC
Q 021210           74 IEAYEEECDWADLDADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRK  149 (316)
Q Consensus        74 ~g~~~e~e~~~~~d~~~~~~~~~~~--~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~  149 (316)
                      |-...|++.++|++.....+.....  .+-++||| .++.......+..+|.+|+|+|+..+.......+...+  .+.|
T Consensus        53 d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~-~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p  131 (691)
T 1dar_A           53 DFMEQERERGITITAAVTTCFWKDHRINIIDTPGH-VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVP  131 (691)
T ss_dssp             --------------CCEEEEEETTEEEEEECCCSS-TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCC
T ss_pred             cCchhhhhcccccccceEEEEECCeEEEEEECcCc-cchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCC
Confidence            3334455667777776664433322  37789999 55777788889999999999999987654443333322  3789


Q ss_pred             EEEEEEccCCCC
Q 021210          150 RILVLNREDMIS  161 (316)
Q Consensus       150 ~IlVlNK~DLv~  161 (316)
                      +++|+||+|+..
T Consensus       132 ~ivviNKiD~~~  143 (691)
T 1dar_A          132 RIAFANKMDKTG  143 (691)
T ss_dssp             EEEEEECTTSTT
T ss_pred             EEEEEECCCccc
Confidence            999999999875

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=98.09  E-value=1e-06  Score=86.16  Aligned_cols=22  Identities=27%  Similarity=0.375  Sum_probs=20.2

Q ss_pred             EEeEeccCCCCcchhHHhhhcC
Q 021210          219 RAGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      -|+|+|.+|+|||||+|.|++.
T Consensus        69 vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           69 AVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhhh
Confidence            4899999999999999999964

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=98.08  E-value=3.7e-06  Score=79.42  Aligned_cols=24  Identities=25%  Similarity=0.486  Sum_probs=22.3

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRM  242 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~  242 (316)
                      +|+++|.+|+|||||+|+|.+...
T Consensus        36 ~I~vvG~~~sGKSSLln~l~g~~~   59 (360)
T 3t34_A           36 AIAVVGGQSSGKSSVLESIVGKDF   59 (360)
T ss_dssp             EEEEECBTTSSHHHHHHHHHTSCC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCc
Confidence            799999999999999999998654

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=98.08  E-value=1.4e-06  Score=86.86  Aligned_cols=99  Identities=13%  Similarity=0.116  Sum_probs=63.2

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh----CCCCEEEEEEccCCCChHh--HHHHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL----GNRKRILVLNREDMISMAD--RNAWATYFA  173 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l----~~k~~IlVlNK~DLv~~~~--~~~~~~~~~  173 (316)
                      +.++||+ ..+.......+..+|++|+|+|+...  .....+...+    .+.|+++|+||+|+.+..+  .+...+.+.
T Consensus       102 i~Dt~G~-e~~~~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~  178 (535)
T 3dpu_A          102 FWDFGGQ-EIMHASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFP  178 (535)
T ss_dssp             EECCCSC-CTTTTTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCG
T ss_pred             EEECCcH-HHHHHHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHH
Confidence            5567775 33333334557889999999999754  1222222222    3589999999999976432  334445555


Q ss_pred             hcCceEEEeccccccchhhhHHHHHHhh
Q 021210          174 KQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (316)
Q Consensus       174 ~~g~~vi~iSa~~g~gi~~L~~~L~~l~  201 (316)
                      ..+..++.+||++|.|+++|.+.+.+..
T Consensus       179 ~~~~~~~~vSA~~g~gi~eL~~~l~~~~  206 (535)
T 3dpu_A          179 AIENRFHRISCKNGDGVESIAKSLKSAV  206 (535)
T ss_dssp             GGTTCEEECCC-----CTTHHHHHHHHH
T ss_pred             hcCCceEEEecCcccCHHHHHHHHHHHH
Confidence            6677899999999999999988776654

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=98.07  E-value=7.9e-06  Score=74.19  Aligned_cols=80  Identities=10%  Similarity=0.023  Sum_probs=48.8

Q ss_pred             cCeEEEEEeCC-CCCCCCcHHHHHHhC-CCCEEEEEEccCCCChHhHHHH----HHHHHhcCceEEEeccccccchhhhH
Q 021210          121 MDVVIEVRDAR-IPLSTTHPLMDQWLG-NRKRILVLNREDMISMADRNAW----ATYFAKQGTKVIFSNGQLGMGTMKLS  194 (316)
Q Consensus       121 aDlIl~VvDar-~~~~~~~~~i~~~l~-~k~~IlVlNK~DLv~~~~~~~~----~~~~~~~g~~vi~iSa~~g~gi~~L~  194 (316)
                      +|++++++|.. .+....+..+.+.+. ++|+++|+||+|+.+..+....    .+.+...++.++.+|+.++.|++++.
T Consensus       116 ~~~~l~~i~~~~~~~~~~d~~~l~~l~~~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~  195 (274)
T 3t5d_A          116 VQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLV  195 (274)
T ss_dssp             CCEEEEEECSCCSSCCHHHHHHHHHHTTTSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------C
T ss_pred             eeEEEEEecCCCCCCCHHHHHHHHHHhccCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHH
Confidence            77888888654 455655666666665 7899999999999987665433    34455567788889999999999887


Q ss_pred             HHHHHh
Q 021210          195 RLAKAL  200 (316)
Q Consensus       195 ~~L~~l  200 (316)
                      +.+.+.
T Consensus       196 ~~l~~~  201 (274)
T 3t5d_A          196 KKIKDR  201 (274)
T ss_dssp             HHHHHT
T ss_pred             HHHhcC
Confidence            776553

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=98.06  E-value=5.5e-06  Score=70.90  Aligned_cols=58  Identities=19%  Similarity=0.320  Sum_probs=38.3

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccC-CCCCceeeEEEEEeCC---cEEEEeCCCccc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAA-PRPGVTRVLKWVRFGK---DLEFLDSPGIIP  274 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs-~~pgtT~~~~~~~~~~---~~~liDTPGi~~  274 (316)
                      .++|+++|.+|||||||+|+|.+....... +..|++.....+.++.   .+.++||||...
T Consensus         5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~   66 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER   66 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGG
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchh
Confidence            468999999999999999999986532221 2223333333344433   356899999754

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=98.05  E-value=4.6e-06  Score=70.77  Aligned_cols=56  Identities=27%  Similarity=0.286  Sum_probs=36.8

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee-EEEEEeCC---cEEEEeCCCcc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV-LKWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~-~~~~~~~~---~~~liDTPGi~  273 (316)
                      ..++|+++|.+|||||||+|++++..... ...| |... ...+.++.   .+.++||||..
T Consensus        19 ~~~ki~ivG~~~vGKSsL~~~~~~~~~~~-~~~~-t~~~~~~~~~~~~~~~~l~i~Dt~G~~   78 (184)
T 3ihw_A           19 PELKVGIVGNLSSGKSALVHRYLTGTYVQ-EESP-EGGRFKKEIVVDGQSYLLLIRDEGGPP   78 (184)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHSSCCC-CCCT-TCEEEEEEEEETTEEEEEEEEECSSSC
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCCCCC-CcCC-CcceEEEEEEECCEEEEEEEEECCCCh
Confidence            46899999999999999999999765322 1122 1111 12233332   35679999974

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=98.05  E-value=2.3e-06  Score=80.12  Aligned_cols=54  Identities=20%  Similarity=0.318  Sum_probs=36.6

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEe-CCcEEEEeCCCcc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGII  273 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~-~~~~~liDTPGi~  273 (316)
                      ..++|+++|.+|||||||+|+|.+.....  ..|  |++...  +.. +..+.|+||||-.
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~--~~p--T~~~~~~~~~~~~~~l~i~Dt~G~~  220 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKLGEIVT--TIP--TIGFNVETVEYKNISFTVWDVGGQD  220 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCSSCCEE--EEE--ETTEEEEEEEETTEEEEEEECC---
T ss_pred             CcceEEEECCCCccHHHHHHHHhCCCCCC--ccc--ccceEEEEEecCcEEEEEEECCCCH
Confidence            35789999999999999999999876432  233  443332  222 3468899999954

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.05  E-value=2.4e-06  Score=82.84  Aligned_cols=55  Identities=38%  Similarity=0.602  Sum_probs=44.1

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEeC--CcEEEEeCCCccc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG--KDLEFLDSPGIIP  274 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~~--~~~~liDTPGi~~  274 (316)
                      .|+++|.+|+|||||+|+|.+... .+++.|++|.....  +..+  ..+.+.||||+..
T Consensus       159 ~VgLVG~~gAGKSTLL~~Lsg~~~-~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~  217 (416)
T 1udx_A          159 DVGLVGYPNAGKSSLLAAMTRAHP-KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIE  217 (416)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCC-EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCC
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCc-cccCcccceecceeeEEEecCcceEEEEecccccc
Confidence            589999999999999999998753 67888998876432  3333  5689999999964

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=98.04  E-value=4.1e-06  Score=70.56  Aligned_cols=25  Identities=12%  Similarity=0.134  Sum_probs=22.5

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      .++|+++|.+|||||||+|.|.+..
T Consensus        14 ~~ki~vvG~~~~GKssL~~~l~~~~   38 (198)
T 3t1o_A           14 NFKIVYYGPGLSGKTTNLKWIYSKV   38 (198)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHhhc
Confidence            5789999999999999999988754

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=98.03  E-value=1.5e-05  Score=73.79  Aligned_cols=112  Identities=13%  Similarity=0.064  Sum_probs=69.3

Q ss_pred             hhccccCCcceEEEe--cccc-ccccccchHHHHH-----HHHHHHHhhcCeEEEEEeCCCCCCCCcHH-----HHHH--
Q 021210           80 ECDWADLDADLYYWT--KSLR-PVQWYPGHIAKTE-----KELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQW--  144 (316)
Q Consensus        80 ~e~~~~~d~~~~~~~--~~~~-~i~~~Pgh~~~~~-----r~l~~~i~~aDlIl~VvDar~~~~~~~~~-----i~~~--  144 (316)
                      ...+.|++..+..+.  .... .+-++||+ .++.     ......+..+|++|+|+|+.++.+..+..     +..+  
T Consensus        33 ~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~-~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~  111 (307)
T 3r7w_A           33 RRLGATIDVEHSHLRFLGNMTLNLWDCGGQ-DVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRK  111 (307)
T ss_dssp             GGCCCCCSEEEEEEEETTTEEEEEEEECCS-HHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHH
T ss_pred             cCcCCccceEEEEEEeCCceEEEEEECCCc-HHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHH
Confidence            355667777666443  2111 26678998 4442     33345678999999999998765433221     1111  


Q ss_pred             -hCCCCEEEEEEccCCCChHhH--------HHHHHHHHhcC---ceEEEeccccccchhhh
Q 021210          145 -LGNRKRILVLNREDMISMADR--------NAWATYFAKQG---TKVIFSNGQLGMGTMKL  193 (316)
Q Consensus       145 -l~~k~~IlVlNK~DLv~~~~~--------~~~~~~~~~~g---~~vi~iSa~~g~gi~~L  193 (316)
                       ..+.|+++|+||+|+.+.++.        ++..++....|   ..++.+||++ .|+.++
T Consensus       112 ~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~  171 (307)
T 3r7w_A          112 YSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKA  171 (307)
T ss_dssp             HCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHH
T ss_pred             hCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHH
Confidence             226899999999999874332        22233344455   6789999998 555443

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=98.03  E-value=3.9e-06  Score=74.00  Aligned_cols=98  Identities=14%  Similarity=0.049  Sum_probs=65.1

Q ss_pred             ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHH---Hh-CCCCEEEEEEccCCCChHh--HHHHHHHH
Q 021210          101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQ---WL-GNRKRILVLNREDMISMAD--RNAWATYF  172 (316)
Q Consensus       101 ~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~~---~l-~~k~~IlVlNK~DLv~~~~--~~~~~~~~  172 (316)
                      -+++|. .++..........+|.+++|.|..+..+..+.  .+..   .. .+.|++||.||+||.+..+  .++..++.
T Consensus        67 wDtaGq-e~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a  145 (216)
T 4dkx_A           67 WDTAGL-ERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKA  145 (216)
T ss_dssp             ECCSCT-TTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred             EECCCc-hhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHH
Confidence            345665 45555556778999999999998765433221  1111   11 2568999999999965321  22233444


Q ss_pred             HhcCceEEEeccccccchhhhHHHHHH
Q 021210          173 AKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       173 ~~~g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      .+.+..++.+||++|.|++++.+.|.+
T Consensus       146 ~~~~~~~~e~SAktg~nV~e~F~~i~~  172 (216)
T 4dkx_A          146 KELNVMFIETSAKAGYNVKQLFRRVAA  172 (216)
T ss_dssp             HHHTCEEEEEBTTTTBSHHHHHHHHHH
T ss_pred             HHhCCeeEEEeCCCCcCHHHHHHHHHH
Confidence            556788899999999999998776543

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=98.02  E-value=4.9e-07  Score=90.42  Aligned_cols=57  Identities=30%  Similarity=0.517  Sum_probs=44.2

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe----CCcEEEEeCCCcc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF----GKDLEFLDSPGII  273 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~----~~~~~liDTPGi~  273 (316)
                      ++.+|+++|.+|+|||||+|+|.+... .....+|+|.+...+.+    +..+.|+||||..
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~-~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe   63 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQV-AAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHA   63 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHH-HHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCc-ccccCCceeEEEeEEEEEeCCCCEEEEEECCChH
Confidence            456799999999999999999997663 34467899988643322    3468999999964

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=98.02  E-value=7.1e-06  Score=71.07  Aligned_cols=56  Identities=21%  Similarity=0.324  Sum_probs=37.2

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE-EEEEeCC---cEEEEeCCCcc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~-~~~~~~~---~~~liDTPGi~  273 (316)
                      .++|+++|.+|||||||+|+|.+... .....|.+..+. ..+..+.   .+.|+||||..
T Consensus        28 ~~ki~vvG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~   87 (205)
T 1gwn_A           28 KCKIVVVGDSQCGKTALLHVFAKDCF-PENYVPTVFENYTASFEIDTQRIELSLWDTSGSP   87 (205)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSG
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCC-CCCcCCccceeEEEEEEECCEEEEEEEEeCCCcH
Confidence            57899999999999999999997653 222223222222 1223322   47899999964

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=98.01  E-value=2.8e-05  Score=80.19  Aligned_cols=89  Identities=15%  Similarity=0.008  Sum_probs=62.1

Q ss_pred             CCcchhhhhhccccCCcceEEEecc---------ccccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHH
Q 021210           72 GSIEAYEEECDWADLDADLYYWTKS---------LRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMD  142 (316)
Q Consensus        72 ~~~g~~~e~e~~~~~d~~~~~~~~~---------~~~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~  142 (316)
                      +.|-...|++.++|++.....+.-.         .-.+-++||| .++...+...+..+|.+|+|+|+..+.......+.
T Consensus        49 ~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDTPG~-~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~  127 (704)
T 2rdo_7           49 TMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTPGH-VDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW  127 (704)
T ss_pred             eecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEeCCCc-cchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH
Confidence            3344445667778877766533321         1127789999 66778888899999999999999987654333333


Q ss_pred             HHh--CCCCEEEEEEccCCCC
Q 021210          143 QWL--GNRKRILVLNREDMIS  161 (316)
Q Consensus       143 ~~l--~~k~~IlVlNK~DLv~  161 (316)
                      ...  .+.|+++|+||+|+..
T Consensus       128 ~~~~~~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7          128 RQANKYKVPRIAFVNKMDRMG  148 (704)
T ss_pred             HHHHHcCCCEEEEEeCCCccc
Confidence            332  2689999999999864

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=98.00  E-value=7.8e-06  Score=69.76  Aligned_cols=57  Identities=16%  Similarity=0.332  Sum_probs=38.4

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCcee--eEEEEEeCC-c--EEEEeCCCccc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR--VLKWVRFGK-D--LEFLDSPGIIP  274 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~--~~~~~~~~~-~--~~liDTPGi~~  274 (316)
                      .++++++|.+|||||||+|+|.+..... ...|.++.  ....+.++. .  +.++||||...
T Consensus        29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~-~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~   90 (191)
T 1oix_A           29 LFKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER   90 (191)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCCCC-SCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCS
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCccceEEEEEEEEECCEEEEEEEEECCCCcc
Confidence            5789999999999999999999865322 22233332  233344433 3  45699999854

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=98.00  E-value=6.5e-06  Score=71.62  Aligned_cols=56  Identities=16%  Similarity=0.177  Sum_probs=36.6

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee-EE-EEEeC-C--cEEEEeCCCcc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV-LK-WVRFG-K--DLEFLDSPGII  273 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~-~~-~~~~~-~--~~~liDTPGi~  273 (316)
                      ..++|+++|.+|||||||+|+|.+....  .....|+.. .. .+..+ .  .+.|+||||..
T Consensus        26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~   86 (214)
T 3q3j_B           26 ARCKLVLVGDVQCGKTAMLQVLAKDCYP--ETYVPTVFENYTACLETEEQRVELSLWDTSGSP   86 (214)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEEC--CEEEEEEEEECCSG
T ss_pred             ceEEEEEECcCCCCHHHHHHHHhcCCCC--CCcCCeeeeeEEEEEEECCEEEEEEEEECCCCH
Confidence            3579999999999999999999976532  222222222 21 12222 2  47899999964

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.00  E-value=3.3e-06  Score=80.22  Aligned_cols=58  Identities=29%  Similarity=0.382  Sum_probs=30.9

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCC------CceeeEE--EEEe--CC---cEEEEeCCCcc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP------GVTRVLK--WVRF--GK---DLEFLDSPGII  273 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~p------gtT~~~~--~~~~--~~---~~~liDTPGi~  273 (316)
                      ..++|+++|.+|+|||||+|+|++......+..+      +.|....  .+.+  +.   .+.++||||+.
T Consensus        36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~g  106 (361)
T 2qag_A           36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYG  106 (361)
T ss_dssp             CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-----
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEecccc
Confidence            3578999999999999999999876544333221      2233222  2111  11   47899999994

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=97.99  E-value=3.9e-06  Score=76.36  Aligned_cols=91  Identities=13%  Similarity=0.133  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHhhcCeEE-EEEeCCCCCCCCcH-HHHHHhC--CCCEEEEEEccCCCChHh-HHHHHHH-HHhc--C-ceE
Q 021210          109 KTEKELKDQLKLMDVVI-EVRDARIPLSTTHP-LMDQWLG--NRKRILVLNREDMISMAD-RNAWATY-FAKQ--G-TKV  179 (316)
Q Consensus       109 ~~~r~l~~~i~~aDlIl-~VvDar~~~~~~~~-~i~~~l~--~k~~IlVlNK~DLv~~~~-~~~~~~~-~~~~--g-~~v  179 (316)
                      .+...+...+..++.++ +|+|+..+....+. .+.+.+.  +.|+++|+||+|+.+... ..++.+. +...  + ..+
T Consensus       150 ~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v  229 (299)
T 2aka_B          150 QIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGV  229 (299)
T ss_dssp             HHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEEC
T ss_pred             HHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEE
Confidence            44555667788888655 79999877655543 3555553  679999999999986543 2222211 1111  2 356


Q ss_pred             EEeccccccchhhhHHHHHH
Q 021210          180 IFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       180 i~iSa~~g~gi~~L~~~L~~  199 (316)
                      +++||++|.|+++|.+.+..
T Consensus       230 ~~~SA~~~~gi~~l~~~l~~  249 (299)
T 2aka_B          230 VNRSQKDIDGKKDITAALAA  249 (299)
T ss_dssp             CCCCCBCTTSCBCHHHHHHH
T ss_pred             ECCChhhccccccHHHHHHH
Confidence            78999999999999887665

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.98  E-value=1e-05  Score=67.11  Aligned_cols=79  Identities=19%  Similarity=0.162  Sum_probs=51.8

Q ss_pred             hhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCEEEEEEccCCCChHhHH-HHHHHHHhcCceEEEeccccccchhhhHH
Q 021210          119 KLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRN-AWATYFAKQGTKVIFSNGQLGMGTMKLSR  195 (316)
Q Consensus       119 ~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~IlVlNK~DLv~~~~~~-~~~~~~~~~g~~vi~iSa~~g~gi~~L~~  195 (316)
                      ..+|++++|+|+....  ....+...+  .+.|+++|.||+|+....... +..+.....+..++++||++|.|++++.+
T Consensus        80 ~~~~~~i~v~D~~~~~--~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~v~~l~~  157 (165)
T 2wji_A           80 EKPDLVVNIVDATALE--RNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKK  157 (165)
T ss_dssp             HCCSEEEEEEETTCHH--HHHHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHHHH
T ss_pred             CCCCEEEEEecCCchh--HhHHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCCHHHHHH
Confidence            4899999999987521  111111112  368999999999985432110 11122234467899999999999999887


Q ss_pred             HHHH
Q 021210          196 LAKA  199 (316)
Q Consensus       196 ~L~~  199 (316)
                      .+.+
T Consensus       158 ~l~~  161 (165)
T 2wji_A          158 AISI  161 (165)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7654

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=97.96  E-value=3.1e-06  Score=80.74  Aligned_cols=47  Identities=21%  Similarity=0.393  Sum_probs=37.9

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe---CCcEEEEeCCCccc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP  274 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~~  274 (316)
                      +|+++|.+|+|||||+|+|+         ..|+|.+.....+   +..+.|+||||...
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~   72 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEGRNMVFVDAHSYPK   72 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSSSEEEEEECTTTTT
T ss_pred             EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCCeEEEEEECCChHH
Confidence            79999999999999999998         3466766554444   34689999999864

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=97.96  E-value=1.6e-05  Score=70.80  Aligned_cols=102  Identities=18%  Similarity=0.204  Sum_probs=62.9

Q ss_pred             cccccchHHHH-----HHHHHHHHhhcCeEEEEEeCCCCCCCCcHH-H----HH--HhCCCCEEEEEEccCCCChHhHHH
Q 021210          100 VQWYPGHIAKT-----EKELKDQLKLMDVVIEVRDARIPLSTTHPL-M----DQ--WLGNRKRILVLNREDMISMADRNA  167 (316)
Q Consensus       100 i~~~Pgh~~~~-----~r~l~~~i~~aDlIl~VvDar~~~~~~~~~-i----~~--~l~~k~~IlVlNK~DLv~~~~~~~  167 (316)
                      +-++||.....     .+.+.+.+.. +++++|+|+.......+.. .    ..  ...+.|.++|+||+|+.+..+.++
T Consensus       113 iiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~~~~~  191 (262)
T 1yrb_A          113 LIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKER  191 (262)
T ss_dssp             EEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHHHHHH
T ss_pred             EEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccccHHH
Confidence            44567764332     2334445566 9999999987544332211 0    01  112689999999999987643221


Q ss_pred             HHHH----------------------------HHhcC--ceEEEeccccccchhhhHHHHHHhhh
Q 021210          168 WATY----------------------------FAKQG--TKVIFSNGQLGMGTMKLSRLAKALAS  202 (316)
Q Consensus       168 ~~~~----------------------------~~~~g--~~vi~iSa~~g~gi~~L~~~L~~l~~  202 (316)
                      ..++                            +.+.+  ..++++||++|.|+++|.+.+.+...
T Consensus       192 ~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~  256 (262)
T 1yrb_A          192 HRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC  256 (262)
T ss_dssp             HHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence            1111                            12223  36899999999999999988776543

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=97.95  E-value=1.1e-06  Score=86.00  Aligned_cols=57  Identities=21%  Similarity=0.331  Sum_probs=39.9

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCc-cc-----------------------------ccCCCCCceeeEEEEEe---CCc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRR-MC-----------------------------PAAPRPGVTRVLKWVRF---GKD  263 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~-~~-----------------------------~vs~~pgtT~~~~~~~~---~~~  263 (316)
                      .++|+++|.+|+|||||+|+|++.. ..                             ......|+|.+.....+   +..
T Consensus         7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~   86 (458)
T 1f60_A            7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQ   86 (458)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEE
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCce
Confidence            5789999999999999999998541 00                             00112688877543332   346


Q ss_pred             EEEEeCCCcc
Q 021210          264 LEFLDSPGII  273 (316)
Q Consensus       264 ~~liDTPGi~  273 (316)
                      +.|+||||..
T Consensus        87 ~~iiDtPGh~   96 (458)
T 1f60_A           87 VTVIDAPGHR   96 (458)
T ss_dssp             EEEEECCCCT
T ss_pred             EEEEECCCcH
Confidence            8999999964

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=97.95  E-value=8.7e-06  Score=74.77  Aligned_cols=56  Identities=20%  Similarity=0.149  Sum_probs=39.9

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEeC-Cc--EEEEeCCCccc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG-KD--LEFLDSPGIIP  274 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~~-~~--~~liDTPGi~~  274 (316)
                      .++|+++|.+|||||||+|++.+..  ......+||.+...  +..+ ..  +.++||||...
T Consensus       155 ~~~i~i~G~~~~GKssli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~  215 (332)
T 2wkq_A          155 LIKCVVVGDGAVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED  215 (332)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHSC--CCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGG
T ss_pred             eeEEEEECCCCCChHHHHHHHHhCC--CCcccCCcccceeEEEEEECCEEEEEEEEeCCCchh
Confidence            5789999999999999999998654  23445566665432  2232 23  45999999753

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=97.95  E-value=4.3e-06  Score=80.24  Aligned_cols=57  Identities=23%  Similarity=0.328  Sum_probs=41.3

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCccc----c-----------cCCCCCceeeEEEEEe---CCcEEEEeCCCcc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMC----P-----------AAPRPGVTRVLKWVRF---GKDLEFLDSPGII  273 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~----~-----------vs~~pgtT~~~~~~~~---~~~~~liDTPGi~  273 (316)
                      .++|+++|.+|+|||||+|+|++....    .           .....|+|.+.....+   +..+.|+||||..
T Consensus         3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~   77 (397)
T 1d2e_A            3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA   77 (397)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHH
T ss_pred             eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChH
Confidence            478999999999999999999863100    0           1114678887654443   3578999999974

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=97.94  E-value=1.3e-05  Score=79.73  Aligned_cols=53  Identities=13%  Similarity=0.241  Sum_probs=35.2

Q ss_pred             ccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCc
Q 021210          187 GMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       187 g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      ..|+..+.++++.+......  .........+||+++|.+|||||||+|+|.+..
T Consensus        13 ~~g~~~i~~yl~~l~~~~~~--g~~~~~~~~~kV~lvG~~~vGKSSLl~~l~~~~   65 (535)
T 3dpu_A           13 KQGKEAVRQYFQSIEEARSK--GEALVHLQEIKVHLIGDGMAGKTSLLKQLIGET   65 (535)
T ss_dssp             CSSHHHHHHHHHHHHHHHHT--TCCCBCCCEEEEEEESSSCSSHHHHHHHHHC--
T ss_pred             HhCHHHHHHHHHHHHHhhcc--CcccccccceEEEEECCCCCCHHHHHHHHhcCC
Confidence            45677788877776542110  011012346899999999999999999999765

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.94  E-value=7.1e-06  Score=69.31  Aligned_cols=99  Identities=15%  Similarity=0.095  Sum_probs=62.0

Q ss_pred             cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc---HHHHHH---hCCCCEEEEEEccCCCChHhHH----HHHHH
Q 021210          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH---PLMDQW---LGNRKRILVLNREDMISMADRN----AWATY  171 (316)
Q Consensus       102 ~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~---~~i~~~---l~~k~~IlVlNK~DLv~~~~~~----~~~~~  171 (316)
                      +++|. .++.......+..+|++++|+|..++..+.+   ..+..+   ..+.|+++|.||+|+.+.....    +..+.
T Consensus        62 Dt~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  140 (184)
T 2zej_A           62 DFAGR-EEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKE  140 (184)
T ss_dssp             EECSH-HHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHH
T ss_pred             ecCCC-HHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHH
Confidence            45665 4444434456788999999999876532111   111111   1367899999999998754432    22222


Q ss_pred             HH-hcCce----EEEecccccc-chhhhHHHHHHhh
Q 021210          172 FA-KQGTK----VIFSNGQLGM-GTMKLSRLAKALA  201 (316)
Q Consensus       172 ~~-~~g~~----vi~iSa~~g~-gi~~L~~~L~~l~  201 (316)
                      +. ..+..    ++.+||++|. |+++|.+.+.+..
T Consensus       141 ~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~  176 (184)
T 2zej_A          141 LLNKRGFPAIRDYHFVNATEESDALAKLRKTIINES  176 (184)
T ss_dssp             TTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred             HHHhcCCcchhheEEEecccCchhHHHHHHHHHHHH
Confidence            32 23444    7899999996 8888887765543

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=97.93  E-value=2.7e-06  Score=83.97  Aligned_cols=57  Identities=23%  Similarity=0.441  Sum_probs=35.0

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcc------cccCCCCCceeeEEE--EEe-CCcEEEEeCCCcc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRM------CPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGII  273 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~------~~vs~~pgtT~~~~~--~~~-~~~~~liDTPGi~  273 (316)
                      .++|+++|.+|+|||||+|+|++...      ...+..+|+|.+...  +.. +..+.|+||||..
T Consensus        19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~   84 (482)
T 1wb1_A           19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHA   84 (482)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHH
T ss_pred             CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChH
Confidence            57899999999999999999997651      234556788887532  333 3478999999973

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=97.93  E-value=1.1e-05  Score=74.14  Aligned_cols=103  Identities=11%  Similarity=0.054  Sum_probs=64.1

Q ss_pred             cccccchHH------------HHHHHHHHHHhhcCeEEEEEeC-CCCCCCCc-HHHHHHhC--CCCEEEEEEccCCCChH
Q 021210          100 VQWYPGHIA------------KTEKELKDQLKLMDVVIEVRDA-RIPLSTTH-PLMDQWLG--NRKRILVLNREDMISMA  163 (316)
Q Consensus       100 i~~~Pgh~~------------~~~r~l~~~i~~aDlIl~VvDa-r~~~~~~~-~~i~~~l~--~k~~IlVlNK~DLv~~~  163 (316)
                      +-++||...            .+.......+..+|++++|+|+ ..+....+ ..+.+.+.  ++|+++|+||+|+.+..
T Consensus       135 lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~  214 (315)
T 1jwy_B          135 LVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKG  214 (315)
T ss_dssp             EEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSS
T ss_pred             EEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcc
Confidence            567788642            3455566788999999999997 55544344 35666664  68999999999998654


Q ss_pred             h-HHHHHHH-HHhcCce---EEEecccc---ccchhhhHHHHHHhhh
Q 021210          164 D-RNAWATY-FAKQGTK---VIFSNGQL---GMGTMKLSRLAKALAS  202 (316)
Q Consensus       164 ~-~~~~~~~-~~~~g~~---vi~iSa~~---g~gi~~L~~~L~~l~~  202 (316)
                      . ..++.+. +...+..   ++++|+.+   +.|+.++.+.+..+.+
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~  261 (315)
T 1jwy_B          215 TDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFK  261 (315)
T ss_dssp             CCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHH
T ss_pred             hHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHh
Confidence            3 2222211 1111123   34455555   6777777776665543

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=97.92  E-value=1.6e-05  Score=71.85  Aligned_cols=81  Identities=22%  Similarity=0.178  Sum_probs=56.1

Q ss_pred             hhcCeEEEEEeCCCCCCCCcHHHHH-Hh-CCCCEEEEEEccCCCChHhHH-HHHHHHHhcCceEEEeccccccchhhhHH
Q 021210          119 KLMDVVIEVRDARIPLSTTHPLMDQ-WL-GNRKRILVLNREDMISMADRN-AWATYFAKQGTKVIFSNGQLGMGTMKLSR  195 (316)
Q Consensus       119 ~~aDlIl~VvDar~~~~~~~~~i~~-~l-~~k~~IlVlNK~DLv~~~~~~-~~~~~~~~~g~~vi~iSa~~g~gi~~L~~  195 (316)
                      ..+|++++|+|+....  ....+.. +. .+.|+++|+||+|+....... ...+.....|.+++++||++|.|+++|.+
T Consensus        82 ~~~d~ii~V~D~t~~~--~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~  159 (258)
T 3a1s_A           82 GDADLVILVADSVNPE--QSLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEELKE  159 (258)
T ss_dssp             SCCSEEEEEEETTSCH--HHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTTHHHHHH
T ss_pred             cCCCEEEEEeCCCchh--hHHHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcCHHHHHH
Confidence            5899999999998642  1222222 22 278999999999986432211 11223344678899999999999999988


Q ss_pred             HHHHhh
Q 021210          196 LAKALA  201 (316)
Q Consensus       196 ~L~~l~  201 (316)
                      .+.+..
T Consensus       160 ~i~~~~  165 (258)
T 3a1s_A          160 KIVEYA  165 (258)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            876654

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=97.92  E-value=5.1e-06  Score=80.69  Aligned_cols=25  Identities=40%  Similarity=0.480  Sum_probs=22.4

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      .++|+++|.+|+|||||+|+|++..
T Consensus        24 ~~~i~iiG~~~~GKSTLi~~Ll~~~   48 (434)
T 1zun_B           24 MLRFLTCGNVDDGKSTLIGRLLHDS   48 (434)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceEEEEEECCCCCHHHHHHHHHhhc
Confidence            4789999999999999999998653

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=97.92  E-value=1.8e-06  Score=85.69  Aligned_cols=58  Identities=26%  Similarity=0.401  Sum_probs=43.8

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe---CCcEEEEeCCCccc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP  274 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~~  274 (316)
                      ++.+|+++|.+|+|||||+|+|.+.. ...+..+|+|.+...+.+   +..+.|+||||...
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~-v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~   63 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTK-VASGEAGGITQHIGAYHVETENGMITFLDTPGHAA   63 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHH-HSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCC-CccccCCCeeEeEEEEEEEECCEEEEEEECCCcHH
Confidence            45679999999999999999998754 344555788877543333   44689999999753

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=97.91  E-value=2.2e-05  Score=80.70  Aligned_cols=85  Identities=16%  Similarity=0.134  Sum_probs=54.0

Q ss_pred             hhhhhccccCCcceEEEecccc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCEEE
Q 021210           77 YEEECDWADLDADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRIL  152 (316)
Q Consensus        77 ~~e~e~~~~~d~~~~~~~~~~~--~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~Il  152 (316)
                      ..|++.++|+......+.....  .+-++||| .++...+...+..+|.+|+|+|+..+.......+...+  .+.|+++
T Consensus        54 ~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~-~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~il  132 (693)
T 2xex_A           54 EQEQDRGITITSAATTAAWEGHRVNIIDTPGH-VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIV  132 (693)
T ss_dssp             ----------CCSEEEEEETTEEEEEECCCCC-SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEE
T ss_pred             hhhhhcCceEeeeeEEEEECCeeEEEEECcCC-cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEE
Confidence            3455667777776654433222  37789999 45666777889999999999999987665444443333  2789999


Q ss_pred             EEEccCCCCh
Q 021210          153 VLNREDMISM  162 (316)
Q Consensus       153 VlNK~DLv~~  162 (316)
                      |+||+|+...
T Consensus       133 viNK~Dl~~~  142 (693)
T 2xex_A          133 FVNKMDKLGA  142 (693)
T ss_dssp             EEECTTSTTC
T ss_pred             EEECCCcccc
Confidence            9999999753

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=97.88  E-value=9.8e-06  Score=83.99  Aligned_cols=90  Identities=13%  Similarity=0.148  Sum_probs=63.3

Q ss_pred             HHHHHHHHH-hhcCeEEEEEeCCCCCCCCcH-HHHHHhC--CCCEEEEEEccCCCChHhH-HHHHHH-HH--hcC-ceEE
Q 021210          110 TEKELKDQL-KLMDVVIEVRDARIPLSTTHP-LMDQWLG--NRKRILVLNREDMISMADR-NAWATY-FA--KQG-TKVI  180 (316)
Q Consensus       110 ~~r~l~~~i-~~aDlIl~VvDar~~~~~~~~-~i~~~l~--~k~~IlVlNK~DLv~~~~~-~~~~~~-~~--~~g-~~vi  180 (316)
                      ..+.+...+ ..+|+|++|+|++.+....+. .+...+.  ++|+++|+||+|+++.... ....+. +.  +.+ ..++
T Consensus       176 i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV  255 (772)
T 3zvr_A          176 IRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVV  255 (772)
T ss_dssp             HHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECC
T ss_pred             HHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceE
Confidence            333444555 578999999999988777665 5666665  6899999999999876432 111110 00  123 3578


Q ss_pred             EeccccccchhhhHHHHHH
Q 021210          181 FSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       181 ~iSa~~g~gi~~L~~~L~~  199 (316)
                      ++||++|.|+++|.+.+..
T Consensus       256 ~iSA~~G~GvdeL~eaI~~  274 (772)
T 3zvr_A          256 NRSQKDIDGKKDITAALAA  274 (772)
T ss_dssp             CCCCEESSSSEEHHHHHHH
T ss_pred             EecccccccchhHHHHHHH
Confidence            8999999999999887765

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=97.88  E-value=7.1e-06  Score=78.95  Aligned_cols=40  Identities=28%  Similarity=0.343  Sum_probs=30.1

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCccc--ccCCCCCceeeE
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMC--PAAPRPGVTRVL  255 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~--~vs~~pgtT~~~  255 (316)
                      ..++|+++|.+|+|||||+|+|++....  .....+|+|.+.
T Consensus         9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~   50 (410)
T 1kk1_A            9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKI   50 (410)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCC
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEE
Confidence            3578999999999999999999965322  223347888764

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=97.88  E-value=3.8e-06  Score=80.72  Aligned_cols=58  Identities=22%  Similarity=0.311  Sum_probs=41.4

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCc--cc---c------c-----CCCCCceeeEEEEEe---CCcEEEEeCCCccc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRR--MC---P------A-----APRPGVTRVLKWVRF---GKDLEFLDSPGIIP  274 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~--~~---~------v-----s~~pgtT~~~~~~~~---~~~~~liDTPGi~~  274 (316)
                      .++|+++|.+|+|||||+|+|++..  ..   .      .     ...+|+|.+.....+   +..+.|+||||...
T Consensus        11 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~   87 (405)
T 2c78_A           11 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD   87 (405)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence            5789999999999999999998731  00   0      0     013577877544333   35789999999854

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=97.88  E-value=7e-05  Score=64.08  Aligned_cols=84  Identities=19%  Similarity=0.212  Sum_probs=60.0

Q ss_pred             hhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCEEEEEEccCCCChHhH----HHHHHHHHhcC--ceEEEeccccccch
Q 021210          119 KLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADR----NAWATYFAKQG--TKVIFSNGQLGMGT  190 (316)
Q Consensus       119 ~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~IlVlNK~DLv~~~~~----~~~~~~~~~~g--~~vi~iSa~~g~gi  190 (316)
                      ..+|.+++++|+..+....+..+..++  .+.|.++|.||+|+.+..+.    ....+.+.+.+  ..++++|++++.|+
T Consensus       107 ~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~  186 (210)
T 1pui_A          107 QSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGV  186 (210)
T ss_dssp             TTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSH
T ss_pred             hcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCH
Confidence            578999999999887654344454444  36788999999999876542    22233333333  46789999999999


Q ss_pred             hhhHHHHHHhhh
Q 021210          191 MKLSRLAKALAS  202 (316)
Q Consensus       191 ~~L~~~L~~l~~  202 (316)
                      +++.+.+.++..
T Consensus       187 ~~l~~~l~~~~~  198 (210)
T 1pui_A          187 DKLRQKLDTWFS  198 (210)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHh
Confidence            999998877643

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=97.87  E-value=2e-06  Score=85.85  Aligned_cols=58  Identities=21%  Similarity=0.320  Sum_probs=38.3

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCccc---------------cc------CCCCCceeeEEEE--E-eCCcEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMC---------------PA------APRPGVTRVLKWV--R-FGKDLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~---------------~v------s~~pgtT~~~~~~--~-~~~~~~liDTPGi~  273 (316)
                      .+|+|+|.+|+|||||+|+|+.....               .+      ...+|+|......  . .+..+.|+||||..
T Consensus        14 r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~~   93 (528)
T 3tr5_A           14 RTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGHA   93 (528)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCST
T ss_pred             CEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCch
Confidence            47999999999999999999722111               01      1124666553222  2 24568999999986


Q ss_pred             cC
Q 021210          274 PM  275 (316)
Q Consensus       274 ~~  275 (316)
                      ..
T Consensus        94 df   95 (528)
T 3tr5_A           94 DF   95 (528)
T ss_dssp             TC
T ss_pred             hH
Confidence            53

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=97.84  E-value=1.2e-05  Score=72.72  Aligned_cols=81  Identities=22%  Similarity=0.330  Sum_probs=55.9

Q ss_pred             hhcCeEEEEEeCCCCCCCCcHHHHH-Hh-CC-CCEEEEEEccCCCChHhHH-HHHHHHHhcCceEEEeccccccchhhhH
Q 021210          119 KLMDVVIEVRDARIPLSTTHPLMDQ-WL-GN-RKRILVLNREDMISMADRN-AWATYFAKQGTKVIFSNGQLGMGTMKLS  194 (316)
Q Consensus       119 ~~aDlIl~VvDar~~~~~~~~~i~~-~l-~~-k~~IlVlNK~DLv~~~~~~-~~~~~~~~~g~~vi~iSa~~g~gi~~L~  194 (316)
                      .++|++++|+|+..+.  .+..+.. +. .+ .|+++|+||+|+.+..... ...+.....|.+++++||++|.|+++|.
T Consensus        80 ~~~d~vi~v~D~~~~~--~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~~l~  157 (271)
T 3k53_A           80 GNADVIVDIVDSTCLM--RNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEGVEELK  157 (271)
T ss_dssp             TCCSEEEEEEEGGGHH--HHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBTHHHHH
T ss_pred             cCCcEEEEEecCCcch--hhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCCHHHHH
Confidence            6899999999998642  1222211 11 24 8999999999986543211 1122233457889999999999999998


Q ss_pred             HHHHHhh
Q 021210          195 RLAKALA  201 (316)
Q Consensus       195 ~~L~~l~  201 (316)
                      +.+....
T Consensus       158 ~~i~~~~  164 (271)
T 3k53_A          158 RMIALMA  164 (271)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8877654

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=97.84  E-value=3e-05  Score=79.88  Aligned_cols=91  Identities=16%  Similarity=0.148  Sum_probs=57.3

Q ss_pred             CCCcchhhhhhccccCCcceE--EEeccc-------cccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHH
Q 021210           71 NGSIEAYEEECDWADLDADLY--YWTKSL-------RPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLM  141 (316)
Q Consensus        71 ~~~~g~~~e~e~~~~~d~~~~--~~~~~~-------~~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i  141 (316)
                      .++|-...|+|.++|+.....  +|....       =-+-++||| ..+..++...+.-+|-+|+|||+..++...-..+
T Consensus        51 ~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPGH-vDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v  129 (709)
T 4fn5_A           51 ATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPGH-VDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETV  129 (709)
T ss_dssp             -----------------CCEEEEEECCTTSCSCCEEEEEECCCSC-TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHH
T ss_pred             ccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCCC-cccHHHHHHHHHHhCeEEEEEECCCCCchhHHHH
Confidence            467777779999999988776  443221       127799999 7899999999999999999999999887655554


Q ss_pred             HHHhC--CCCEEEEEEccCCCCh
Q 021210          142 DQWLG--NRKRILVLNREDMISM  162 (316)
Q Consensus       142 ~~~l~--~k~~IlVlNK~DLv~~  162 (316)
                      .+...  +.|.++++||+|....
T Consensus       130 ~~~a~~~~lp~i~~iNKiDr~~a  152 (709)
T 4fn5_A          130 WRQANKYGVPRIVYVNKMDRQGA  152 (709)
T ss_dssp             HHHHHHHTCCEEEEEECSSSTTC
T ss_pred             HHHHHHcCCCeEEEEccccccCc
Confidence            44432  7899999999998643

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=97.83  E-value=2.5e-06  Score=77.97  Aligned_cols=81  Identities=15%  Similarity=0.115  Sum_probs=54.3

Q ss_pred             hhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCEEEEEEccCCCChHhHH-HHHHHHHhcCceEEEeccccccchhhhHH
Q 021210          119 KLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRN-AWATYFAKQGTKVIFSNGQLGMGTMKLSR  195 (316)
Q Consensus       119 ~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~IlVlNK~DLv~~~~~~-~~~~~~~~~g~~vi~iSa~~g~gi~~L~~  195 (316)
                      ..+|++++|+|+.+..  ....+...+  .+.|+++|+||+|+....... ...+.....|.+++++||++|.|+++|.+
T Consensus        79 ~~~d~vi~V~D~t~~e--~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~  156 (272)
T 3b1v_A           79 QRADSILNVVDATNLE--RNLYLTTQLIETGIPVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGVDQVVK  156 (272)
T ss_dssp             TCCSEEEEEEEGGGHH--HHHHHHHHHHHTCSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBTTTTBSHHHHHH
T ss_pred             CCCCEEEEEecCCchH--hHHHHHHHHHhcCCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCCEEEEEccCCCCHHHHHH
Confidence            3699999999997531  122222222  378999999999986432111 11122234578899999999999999988


Q ss_pred             HHHHhh
Q 021210          196 LAKALA  201 (316)
Q Consensus       196 ~L~~l~  201 (316)
                      .+....
T Consensus       157 ~i~~~~  162 (272)
T 3b1v_A          157 KAAHTT  162 (272)
T ss_dssp             HHHHSC
T ss_pred             HHHHHH
Confidence            776543

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=97.82  E-value=5.1e-06  Score=80.75  Aligned_cols=58  Identities=31%  Similarity=0.440  Sum_probs=34.6

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcc-c-----------------------------ccCCCCCceeeEEEEEe---CCc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRM-C-----------------------------PAAPRPGVTRVLKWVRF---GKD  263 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~-~-----------------------------~vs~~pgtT~~~~~~~~---~~~  263 (316)
                      .++|+++|.+|+|||||+|+|+.... .                             .....+|+|.+.....+   +..
T Consensus         6 ~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~~   85 (435)
T 1jny_A            6 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF   85 (435)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCeE
Confidence            47899999999999999999985410 0                             01124688888654333   456


Q ss_pred             EEEEeCCCccc
Q 021210          264 LEFLDSPGIIP  274 (316)
Q Consensus       264 ~~liDTPGi~~  274 (316)
                      +.|+||||...
T Consensus        86 ~~iiDtpG~~~   96 (435)
T 1jny_A           86 FTIIDAPGHRD   96 (435)
T ss_dssp             EEECCCSSSTT
T ss_pred             EEEEECCCcHH
Confidence            89999999753

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=97.81  E-value=8.2e-06  Score=76.81  Aligned_cols=23  Identities=52%  Similarity=0.801  Sum_probs=20.5

Q ss_pred             ceEEeEeccCCCCcchhHHhhhc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~  239 (316)
                      ...++++|.||+|||||+|+|.+
T Consensus        55 g~~v~i~G~~GaGKSTLl~~l~g   77 (337)
T 2qm8_A           55 AIRVGITGVPGVGKSTTIDALGS   77 (337)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            34699999999999999999983

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=97.80  E-value=1.4e-05  Score=76.93  Aligned_cols=39  Identities=31%  Similarity=0.362  Sum_probs=27.5

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCccc--ccCCCCCceeeE
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMC--PAAPRPGVTRVL  255 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~--~vs~~pgtT~~~  255 (316)
                      .++|+++|.+|+|||||+|+|.+....  .....+|+|.+.
T Consensus         8 ~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~   48 (408)
T 1s0u_A            8 EVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRL   48 (408)
T ss_dssp             CEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCC
T ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEe
Confidence            578999999999999999999965422  223347888764

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.79  E-value=2.9e-05  Score=72.96  Aligned_cols=96  Identities=11%  Similarity=0.067  Sum_probs=58.5

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCEEEEEEccCCCChHhHHHHHHHHH----hc
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFA----KQ  175 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~IlVlNK~DLv~~~~~~~~~~~~~----~~  175 (316)
                      +-++||+.. ...   .....+|++++|+|+..+.....  +.....+.|.++|+||+|+.+........+.+.    ..
T Consensus       153 liDTpG~~~-~~~---~~~~~aD~vl~Vvd~~~~~~~~~--l~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~  226 (341)
T 2p67_A          153 IVETVGVGQ-SET---EVARMVDCFISLQIAGGGDDLQG--IKKGLMEVADLIVINKDDGDNHTNVAIARHMYESALHIL  226 (341)
T ss_dssp             EEEEECCTT-HHH---HHHTTCSEEEEEECC------CC--CCHHHHHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHS
T ss_pred             EEeCCCccc-hHH---HHHHhCCEEEEEEeCCccHHHHH--HHHhhhcccCEEEEECCCCCChHHHHHHHHHHHHHHHhc
Confidence            446677632 222   24689999999999875432111  100111457899999999987544332222222    11


Q ss_pred             -------CceEEEeccccccchhhhHHHHHHhh
Q 021210          176 -------GTKVIFSNGQLGMGTMKLSRLAKALA  201 (316)
Q Consensus       176 -------g~~vi~iSa~~g~gi~~L~~~L~~l~  201 (316)
                             ...++++||++|.|+++|.+.+.+..
T Consensus       227 ~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~  259 (341)
T 2p67_A          227 RRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK  259 (341)
T ss_dssp             CCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred             cccccCCCCcEEEeeCCCCCCHHHHHHHHHHHH
Confidence                   34678999999999999998877654

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=97.78  E-value=2.1e-05  Score=69.23  Aligned_cols=56  Identities=21%  Similarity=0.312  Sum_probs=33.9

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee--EEEEEeCC---cEEEEeCCCcc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~--~~~~~~~~---~~~liDTPGi~  273 (316)
                      ..||+++|.+|||||||++++..... .....|.+..+  ...+..+.   .+.|+||+|--
T Consensus        13 ~~KivlvGd~~VGKTsLi~r~~~~~f-~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe   73 (216)
T 4dkx_A           13 KFKLVFLGEQSVGKTSLITRFMYDSF-DNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE   73 (216)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSCC-C----------CEEEEEECSSCEEEEEEECCSCTT
T ss_pred             cEEEEEECcCCcCHHHHHHHHHhCCC-CCCcCCccceEEEEEEEEecceEEEEEEEECCCch
Confidence            46899999999999999999986542 22222322222  22233322   36799999964

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=97.78  E-value=3.1e-05  Score=67.81  Aligned_cols=82  Identities=15%  Similarity=0.045  Sum_probs=53.2

Q ss_pred             HhhcCeEEEEEeCCCCCCCCcH-HHH-HHh-----CCCCEEEEEEccCCCChHh--HHHHHHHHHhcCceEEEecccccc
Q 021210          118 LKLMDVVIEVRDARIPLSTTHP-LMD-QWL-----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGM  188 (316)
Q Consensus       118 i~~aDlIl~VvDar~~~~~~~~-~i~-~~l-----~~k~~IlVlNK~DLv~~~~--~~~~~~~~~~~g~~vi~iSa~~g~  188 (316)
                      ...+|.+|+|+|..+..+..+. .+. .+.     .+.|+++|.||+||.+..+  .++...+....+..++.+||++|.
T Consensus       109 ~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~  188 (211)
T 2g3y_A          109 MQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQH  188 (211)
T ss_dssp             CCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTB
T ss_pred             HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCC
Confidence            4668999999998754322111 111 111     2579999999999964321  112122233456788999999999


Q ss_pred             chhhhHHHHHH
Q 021210          189 GTMKLSRLAKA  199 (316)
Q Consensus       189 gi~~L~~~L~~  199 (316)
                      |++++.+.+.+
T Consensus       189 ~v~elf~~l~~  199 (211)
T 2g3y_A          189 NVKELFEGIVR  199 (211)
T ss_dssp             SHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            99998877654

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.73  E-value=1.5e-05  Score=74.98  Aligned_cols=23  Identities=30%  Similarity=0.626  Sum_probs=20.5

Q ss_pred             ceEEeEeccCCCCcchhHHhhhc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~  239 (316)
                      ...++++|.+|+|||||+|.|.+
T Consensus        56 ~~~i~i~G~~g~GKSTl~~~l~~   78 (341)
T 2p67_A           56 TLRLGVTGTPGAGKSTFLEAFGM   78 (341)
T ss_dssp             SEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            45799999999999999999963

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.73  E-value=1.1e-05  Score=69.72  Aligned_cols=89  Identities=16%  Similarity=0.210  Sum_probs=46.7

Q ss_pred             cccccchHHHHHHHHHHHHhh----cCeEEEEEeCC-CCCCCC--cHHHHHHh--------CCCCEEEEEEccCCCChHh
Q 021210          100 VQWYPGHIAKTEKELKDQLKL----MDVVIEVRDAR-IPLSTT--HPLMDQWL--------GNRKRILVLNREDMISMAD  164 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~----aDlIl~VvDar-~~~~~~--~~~i~~~l--------~~k~~IlVlNK~DLv~~~~  164 (316)
                      +-++||+ .++...+...+..    +|++|+|+|+. ++.+..  ...+..++        .+.|+++|+||+|+.+...
T Consensus        59 l~Dt~G~-~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~  137 (218)
T 1nrj_B           59 LVDFPGH-VKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP  137 (218)
T ss_dssp             EEECCCC-GGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred             EEECCCc-HHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCC
Confidence            4567887 3344444455544    99999999998 433221  12222222        3678999999999986543


Q ss_pred             HHHHHH-------HH-HhcCceEEEeccccccc
Q 021210          165 RNAWAT-------YF-AKQGTKVIFSNGQLGMG  189 (316)
Q Consensus       165 ~~~~~~-------~~-~~~g~~vi~iSa~~g~g  189 (316)
                      ..++.+       .+ ...+..++.+|++.|.+
T Consensus       138 ~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~  170 (218)
T 1nrj_B          138 PSKIKDALESEIQKVIERRKKSLNEVERKINEE  170 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence            222211       11 22234567889988765

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=97.72  E-value=8.4e-06  Score=78.34  Aligned_cols=26  Identities=27%  Similarity=0.441  Sum_probs=23.1

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      ..++|+++|.+|+|||||+|+|++..
T Consensus         7 ~~~~I~vvG~~~~GKSTLi~~L~~~~   32 (403)
T 3sjy_A            7 PEVNIGVVGHVDHGKTTLVQAITGIW   32 (403)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHSCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcc
Confidence            35789999999999999999999743

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=97.71  E-value=7e-05  Score=77.06  Aligned_cols=101  Identities=13%  Similarity=0.117  Sum_probs=67.3

Q ss_pred             cccccchHHH--HHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH-HHHHhC--CCCEEEEEEccCCCChH--------hHH
Q 021210          100 VQWYPGHIAK--TEKELKDQLKLMDVVIEVRDARIPLSTTHPL-MDQWLG--NRKRILVLNREDMISMA--------DRN  166 (316)
Q Consensus       100 i~~~Pgh~~~--~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~-i~~~l~--~k~~IlVlNK~DLv~~~--------~~~  166 (316)
                      +-++||....  ..+.+...+.++|++|+|+|+..+.+..+.. +...+.  ++|+++|+||+|+....        +.+
T Consensus       178 LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~  257 (695)
T 2j69_A          178 IVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRESLIDPDDVEELQ  257 (695)
T ss_dssp             EEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGGGGCSSTTCHHHHH
T ss_pred             EEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECcccccccccChhhHHHHH
Confidence            6788997432  2345567889999999999998876654443 333443  67899999999997543        111


Q ss_pred             H----HHH----HHHhc---------CceEEEeccc--------------cccchhhhHHHHHHh
Q 021210          167 A----WAT----YFAKQ---------GTKVIFSNGQ--------------LGMGTMKLSRLAKAL  200 (316)
Q Consensus       167 ~----~~~----~~~~~---------g~~vi~iSa~--------------~g~gi~~L~~~L~~l  200 (316)
                      .    ..+    .+...         ...++++||+              +|.|+++|.+.+...
T Consensus       258 ~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~  322 (695)
T 2j69_A          258 ASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTF  322 (695)
T ss_dssp             HHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHH
Confidence            1    111    12111         1358999999              999999987766543

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.69  E-value=8.9e-05  Score=65.45  Aligned_cols=100  Identities=13%  Similarity=0.060  Sum_probs=55.4

Q ss_pred             cccccchH----------HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh----C---CCCEEEEEEccCCCCh
Q 021210          100 VQWYPGHI----------AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL----G---NRKRILVLNREDMISM  162 (316)
Q Consensus       100 i~~~Pgh~----------~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l----~---~k~~IlVlNK~DLv~~  162 (316)
                      +-++||..          .++.+.+......+|++|+|+|+... +..+......+    .   .+|+++|+||+|+.+.
T Consensus        82 liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~-~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~  160 (239)
T 3lxx_A           82 VVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRY-TEEEHKATEKILKMFGERARSFMILIFTRKDDLGD  160 (239)
T ss_dssp             EEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCC-SSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC--
T ss_pred             EEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCC-CHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCc
Confidence            66788852          22333333334567999999998743 33333222222    1   3589999999999865


Q ss_pred             HhHH--------HHHHHHHhcCceEEEeccccc-----cchhhhHHHHHHh
Q 021210          163 ADRN--------AWATYFAKQGTKVIFSNGQLG-----MGTMKLSRLAKAL  200 (316)
Q Consensus       163 ~~~~--------~~~~~~~~~g~~vi~iSa~~g-----~gi~~L~~~L~~l  200 (316)
                      ....        ...+...+.+..+++++...+     .++.+|.+.+..+
T Consensus       161 ~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~  211 (239)
T 3lxx_A          161 TNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRV  211 (239)
T ss_dssp             ----------CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHhchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHH
Confidence            4433        223334455666777766533     4566666555444

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=97.69  E-value=1.2e-05  Score=82.85  Aligned_cols=59  Identities=20%  Similarity=0.350  Sum_probs=36.1

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCccc-----------ccCC------CCCceeeEEEE--Ee-CCcEEEEeCCCcccC
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMC-----------PAAP------RPGVTRVLKWV--RF-GKDLEFLDSPGIIPM  275 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~-----------~vs~------~pgtT~~~~~~--~~-~~~~~liDTPGi~~~  275 (316)
                      ..+|+++|.+|+|||||+|+|+.....           .+.+      .+|+|......  .. +..+.|+||||....
T Consensus        10 ~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df   88 (693)
T 2xex_A           10 TRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDF   88 (693)
T ss_dssp             EEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcch
Confidence            457999999999999999999852111           1111      35666654322  22 456899999999753

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=97.67  E-value=1.8e-05  Score=79.04  Aligned_cols=59  Identities=17%  Similarity=0.289  Sum_probs=35.9

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCccc---------------ccC------CCCCceeeEEE--E-EeCCcEEEEeCCCc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMC---------------PAA------PRPGVTRVLKW--V-RFGKDLEFLDSPGI  272 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~---------------~vs------~~pgtT~~~~~--~-~~~~~~~liDTPGi  272 (316)
                      ..+|+++|.+|+|||||+|+|+.....               .+.      ...|+|.....  + ..+..+.|+||||.
T Consensus        13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~   92 (529)
T 2h5e_A           13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGH   92 (529)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCS
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCC
Confidence            357999999999999999999863211               111      13455544221  2 22456899999998


Q ss_pred             ccC
Q 021210          273 IPM  275 (316)
Q Consensus       273 ~~~  275 (316)
                      ...
T Consensus        93 ~df   95 (529)
T 2h5e_A           93 EDF   95 (529)
T ss_dssp             TTC
T ss_pred             hhH
Confidence            643

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=97.67  E-value=3.7e-05  Score=68.75  Aligned_cols=101  Identities=12%  Similarity=0.078  Sum_probs=61.9

Q ss_pred             cccccchHH------H----HHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh----C---CCCEEEEEE-ccCCCC
Q 021210          100 VQWYPGHIA------K----TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL----G---NRKRILVLN-REDMIS  161 (316)
Q Consensus       100 i~~~Pgh~~------~----~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l----~---~k~~IlVlN-K~DLv~  161 (316)
                      +-++||+..      +    ..+.+...+..+|++|+|+|+.. +......+..++    .   .+|.++|+| |+|+.+
T Consensus        75 iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~  153 (260)
T 2xtp_A           75 IIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG  153 (260)
T ss_dssp             EEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT
T ss_pred             EEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCC
Confidence            566788632      1    23344456678999999999975 333333332322    2   457888888 999975


Q ss_pred             hHhHHHH---------HHHHHhcCce---E--EEeccccccchhhhHHHHHHhhh
Q 021210          162 MADRNAW---------ATYFAKQGTK---V--IFSNGQLGMGTMKLSRLAKALAS  202 (316)
Q Consensus       162 ~~~~~~~---------~~~~~~~g~~---v--i~iSa~~g~gi~~L~~~L~~l~~  202 (316)
                      .. ...+         .+.....+..   +  +++||+.|.|+++|.+.+..+..
T Consensus       154 ~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~  207 (260)
T 2xtp_A          154 GS-LMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLM  207 (260)
T ss_dssp             CC-HHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cc-HHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHH
Confidence            32 2221         1123333321   2  67899999999999888776543

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.67  E-value=3.7e-05  Score=64.48  Aligned_cols=83  Identities=19%  Similarity=0.143  Sum_probs=53.4

Q ss_pred             hhcCeEEEEEeCCCCCCCCcHHHHHHh-CCCCEEEEEEccCCCChHhHH-HHHHHHHhcCceEEEeccccccchhhhHHH
Q 021210          119 KLMDVVIEVRDARIPLSTTHPLMDQWL-GNRKRILVLNREDMISMADRN-AWATYFAKQGTKVIFSNGQLGMGTMKLSRL  196 (316)
Q Consensus       119 ~~aDlIl~VvDar~~~~~~~~~i~~~l-~~k~~IlVlNK~DLv~~~~~~-~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~  196 (316)
                      ..+|++++|+|+.... .....+..+. .+.|+++|.||+|+....... ...+.....+..++++||++|.|++++.+.
T Consensus        84 ~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  162 (188)
T 2wjg_A           84 EKPDLVVNIVDATALE-RNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKKA  162 (188)
T ss_dssp             HCCSEEEEEEEGGGHH-HHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHHHHH
T ss_pred             cCCCEEEEEecchhHH-HHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHHHHhCCCeEEEEecCCCCHHHHHHH
Confidence            4599999999987421 0011111222 267999999999986432111 112222344678999999999999999887


Q ss_pred             HHHhhh
Q 021210          197 AKALAS  202 (316)
Q Consensus       197 L~~l~~  202 (316)
                      +.....
T Consensus       163 i~~~~~  168 (188)
T 2wjg_A          163 ISIAVK  168 (188)
T ss_dssp             HHHHHT
T ss_pred             HHHHHH
Confidence            766543

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=97.67  E-value=2.2e-05  Score=74.21  Aligned_cols=22  Identities=55%  Similarity=0.741  Sum_probs=20.3

Q ss_pred             ceEEeEeccCCCCcchhHHhhh
Q 021210          217 AVRAGIVGYPNVGKSSLINRLL  238 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~  238 (316)
                      ...|+++|.||||||||+|+|.
T Consensus        79 ~~~I~i~G~~G~GKSTl~~~L~  100 (355)
T 3p32_A           79 AHRVGITGVPGVGKSTAIEALG  100 (355)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHH
Confidence            5679999999999999999996

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=97.66  E-value=7.5e-05  Score=72.32  Aligned_cols=88  Identities=25%  Similarity=0.309  Sum_probs=61.9

Q ss_pred             HHHHhhcCeEEEEEeCC-CCCCCC---cHHHHHH---hCCCCEEEEEEccCCCChHhHHHHHHHHHhcCceEEEeccccc
Q 021210          115 KDQLKLMDVVIEVRDAR-IPLSTT---HPLMDQW---LGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLG  187 (316)
Q Consensus       115 ~~~i~~aDlIl~VvDar-~~~~~~---~~~i~~~---l~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~~vi~iSa~~g  187 (316)
                      .+.++++|.+|+++|+. .+....   ..++..+   +..+|.++|+||+|+........+.+.+...+..++++||+++
T Consensus       230 l~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g  309 (416)
T 1udx_A          230 LRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTG  309 (416)
T ss_dssp             HHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTC
T ss_pred             HHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhcCCeEEEEECCCc
Confidence            34578899999999985 221111   1112222   2368999999999998764445555556556778999999999


Q ss_pred             cchhhhHHHHHHhhh
Q 021210          188 MGTMKLSRLAKALAS  202 (316)
Q Consensus       188 ~gi~~L~~~L~~l~~  202 (316)
                      .|+++|.+.+.+...
T Consensus       310 ~gi~eL~~~i~~~l~  324 (416)
T 1udx_A          310 AGLPALKEALHALVR  324 (416)
T ss_dssp             TTHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHH
Confidence            999999888776554

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=97.66  E-value=2.7e-05  Score=70.98  Aligned_cols=58  Identities=26%  Similarity=0.380  Sum_probs=34.3

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccC-------CCCCceeeE------EEEEeCCcEEEEeCCCccc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAA-------PRPGVTRVL------KWVRFGKDLEFLDSPGIIP  274 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs-------~~pgtT~~~------~~~~~~~~~~liDTPGi~~  274 (316)
                      .++++++|.+|+|||||+|+|.+......+       +.+.+++..      +...+...+.++|+||+..
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~   72 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGD   72 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--C
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhh
Confidence            357999999999999999999985433322       223333211      1111234678999999964

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=97.64  E-value=1.1e-05  Score=79.28  Aligned_cols=58  Identities=24%  Similarity=0.224  Sum_probs=32.1

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCccc------------------------cc------CCCCCceeeEEE--EEe-CCc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMC------------------------PA------APRPGVTRVLKW--VRF-GKD  263 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~------------------------~v------s~~pgtT~~~~~--~~~-~~~  263 (316)
                      .++|+++|.+|+|||||+|+|+.....                        .+      ....|+|.+...  +.. +..
T Consensus        43 ~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~  122 (467)
T 1r5b_A           43 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRR  122 (467)
T ss_dssp             EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEE
T ss_pred             eeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCeE
Confidence            578999999999999999999742110                        00      113577877542  222 346


Q ss_pred             EEEEeCCCccc
Q 021210          264 LEFLDSPGIIP  274 (316)
Q Consensus       264 ~~liDTPGi~~  274 (316)
                      +.|+||||...
T Consensus       123 ~~iiDtPGh~~  133 (467)
T 1r5b_A          123 FSLLDAPGHKG  133 (467)
T ss_dssp             EEECCCCC---
T ss_pred             EEEEECCCcHH
Confidence            89999999753

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.61  E-value=0.00013  Score=68.84  Aligned_cols=84  Identities=10%  Similarity=0.053  Sum_probs=52.3

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCEEEEEEccCCCChHhHH----HHHHHHHh-------cCceEEEecc
Q 021210          116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRN----AWATYFAK-------QGTKVIFSNG  184 (316)
Q Consensus       116 ~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~IlVlNK~DLv~~~~~~----~~~~~~~~-------~g~~vi~iSa  184 (316)
                      ...+.+|++++|+|+..+...  ..+...+...+.++|+||+|+.+.....    .+...+..       ...+++++||
T Consensus       183 ~l~~~~d~vl~V~d~~~~~~~--~~i~~~il~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA  260 (349)
T 2www_A          183 AVADMVDMFVLLLPPAGGDEL--QGIKRGIIEMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISA  260 (349)
T ss_dssp             HHHTTCSEEEEEECCC--------------CCSCSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCT
T ss_pred             hHHhhCCEEEEEEcCCcchhH--HHhHHHHHhcCCEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEec
Confidence            346799999999998765321  1122223356889999999997643322    12211111       1246789999


Q ss_pred             ccccchhhhHHHHHHhh
Q 021210          185 QLGMGTMKLSRLAKALA  201 (316)
Q Consensus       185 ~~g~gi~~L~~~L~~l~  201 (316)
                      ++|.|+++|.+.+.++.
T Consensus       261 ~~g~Gi~~L~~~I~~~~  277 (349)
T 2www_A          261 RSGEGISEMWDKMKDFQ  277 (349)
T ss_dssp             TTCTTHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            99999999998887754

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.60  E-value=5.9e-05  Score=73.22  Aligned_cols=57  Identities=21%  Similarity=0.305  Sum_probs=38.6

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCccc---ccCCCCCceeeEEEEEe-C----CcEEEEeCCCccc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMC---PAAPRPGVTRVLKWVRF-G----KDLEFLDSPGIIP  274 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~---~vs~~pgtT~~~~~~~~-~----~~~~liDTPGi~~  274 (316)
                      ++++++|.+|+|||||+|+|.+....   .....|+.++....+.. .    ..+.++||||+..
T Consensus        43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~  107 (427)
T 2qag_B           43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGD  107 (427)
T ss_dssp             EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhh
Confidence            45899999999999999999987421   11223566665332222 1    2578999999964

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=97.59  E-value=1.6e-05  Score=80.43  Aligned_cols=56  Identities=21%  Similarity=0.421  Sum_probs=36.9

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCC-CceeeE--EEEEeC-------------------CcEEEEeCCCccc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-GVTRVL--KWVRFG-------------------KDLEFLDSPGIIP  274 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~p-gtT~~~--~~~~~~-------------------~~~~liDTPGi~~  274 (316)
                      +.+|+++|.+|+|||||+|+|++...  ....| |+|.+.  ..+...                   ..+.|+||||...
T Consensus         5 ~~~V~IvGh~d~GKTTLl~~L~~~~v--~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~   82 (594)
T 1g7s_A            5 SPIVSVLGHVDHGKTTLLDHIRGSAV--ASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA   82 (594)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHH--SCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred             CcEEEEECCCCCcHHHHHHHHhcccC--ccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence            56899999999999999999997532  22233 565542  222110                   1389999999743

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=97.59  E-value=3.5e-05  Score=71.25  Aligned_cols=58  Identities=29%  Similarity=0.348  Sum_probs=30.1

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCC------ceee--EEEEEe-----CCcEEEEeCCCcc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG------VTRV--LKWVRF-----GKDLEFLDSPGII  273 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pg------tT~~--~~~~~~-----~~~~~liDTPGi~  273 (316)
                      ..++|+++|.+|||||||+|+|.+.+....+..+.      .|..  ...+..     ...+.++||||+.
T Consensus        17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~   87 (301)
T 2qnr_A           17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYG   87 (301)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC---
T ss_pred             CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhh
Confidence            35789999999999999999998763333322210      1211  111111     2257899999994

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=97.58  E-value=9.9e-05  Score=71.39  Aligned_cols=57  Identities=26%  Similarity=0.211  Sum_probs=35.8

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccc----cCCCCCceeeEEEEEe--CCcEEEEeCCCccc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCP----AAPRPGVTRVLKWVRF--GKDLEFLDSPGIIP  274 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~----vs~~pgtT~~~~~~~~--~~~~~liDTPGi~~  274 (316)
                      ..++++|.+|+|||||+|+|.|.....    .-....+|+....+..  ..++.+.|+||+..
T Consensus        70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~  132 (413)
T 1tq4_A           70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGS  132 (413)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGG
T ss_pred             eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccc
Confidence            469999999999999999999843211    1111224443222222  23689999999864

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=97.49  E-value=0.00021  Score=60.88  Aligned_cols=83  Identities=13%  Similarity=0.003  Sum_probs=53.3

Q ss_pred             HHhhcCeEEEEEeCCCCCCCCcH-H----HHHHh--CCCCEEEEEEccCCCChHh--HHHHHHHHHhcCceEEEeccccc
Q 021210          117 QLKLMDVVIEVRDARIPLSTTHP-L----MDQWL--GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLG  187 (316)
Q Consensus       117 ~i~~aDlIl~VvDar~~~~~~~~-~----i~~~l--~~k~~IlVlNK~DLv~~~~--~~~~~~~~~~~g~~vi~iSa~~g  187 (316)
                      ....+|.+++|+|..+..+..+. .    +....  .+.|+++|.||+|+.....  .++...+....+..++.+||++|
T Consensus        77 ~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g  156 (192)
T 2cjw_A           77 CMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQ  156 (192)
T ss_dssp             HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTT
T ss_pred             hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccC
Confidence            35678999999998764332211 1    11211  2579999999999964321  11112222344567899999999


Q ss_pred             cchhhhHHHHHH
Q 021210          188 MGTMKLSRLAKA  199 (316)
Q Consensus       188 ~gi~~L~~~L~~  199 (316)
                      .|++++.+.+.+
T Consensus       157 ~~v~~lf~~l~~  168 (192)
T 2cjw_A          157 HNVKELFEGIVR  168 (192)
T ss_dssp             BSHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH
Confidence            999998876654

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.48  E-value=9.7e-05  Score=63.88  Aligned_cols=80  Identities=9%  Similarity=-0.022  Sum_probs=53.3

Q ss_pred             hcCeEEEEEeCCCCCCCCcHHHHHHhCCCCEEEEEEccCCCChH--hHHHHHHHHHhc--CceEEEeccccccchhhhHH
Q 021210          120 LMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMA--DRNAWATYFAKQ--GTKVIFSNGQLGMGTMKLSR  195 (316)
Q Consensus       120 ~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~IlVlNK~DLv~~~--~~~~~~~~~~~~--g~~vi~iSa~~g~gi~~L~~  195 (316)
                      .++.+++|+|+..+..  .........+.|.++|+||+|+.+..  +..+..+.+...  +..++++||++|.|+++|.+
T Consensus       129 ~~~~~i~vvd~~~~~~--~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~  206 (221)
T 2wsm_A          129 GENYRVVMVSVTEGDD--VVEKHPEIFRVADLIVINKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWID  206 (221)
T ss_dssp             SCSEEEEEEEGGGCTT--HHHHCHHHHHTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHH
T ss_pred             ccCcEEEEEeCCCcch--hhhhhhhhhhcCCEEEEecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHH
Confidence            4578999999986532  11110111257899999999986432  233444444443  36789999999999999988


Q ss_pred             HHHHhh
Q 021210          196 LAKALA  201 (316)
Q Consensus       196 ~L~~l~  201 (316)
                      .+.+..
T Consensus       207 ~l~~~~  212 (221)
T 2wsm_A          207 FLRGIL  212 (221)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            876543

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=97.47  E-value=3.7e-05  Score=73.97  Aligned_cols=48  Identities=19%  Similarity=0.159  Sum_probs=36.0

Q ss_pred             CCCEEEEEEccCCCChHhHHHHHHHHHhcCceEEEeccccccchhhhH
Q 021210          147 NRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLS  194 (316)
Q Consensus       147 ~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~  194 (316)
                      .+|+++|+||+|+.......++.+.+...+..++++||+.+.|+.+|.
T Consensus       214 ~kP~i~v~NK~D~~~~~~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~  261 (397)
T 1wxq_A          214 NKPMVIAANKADAASDEQIKRLVREEEKRGYIVIPTSAAAELTLRKAA  261 (397)
T ss_dssp             HSCEEEEEECGGGSCHHHHHHHHHHHHHTTCEEEEECHHHHHHHHSCS
T ss_pred             CCCEEEEEeCccccchHHHHHHHHHHhhcCCcEEEEeccchhhHHHHH
Confidence            489999999999985444445555554446689999999999887653

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=97.42  E-value=5.8e-05  Score=77.60  Aligned_cols=58  Identities=19%  Similarity=0.271  Sum_probs=34.7

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCccc-----cc------CC------CCCceeeEEEEE---eCCcEEEEeCCCccc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMC-----PA------AP------RPGVTRVLKWVR---FGKDLEFLDSPGIIP  274 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~-----~v------s~------~pgtT~~~~~~~---~~~~~~liDTPGi~~  274 (316)
                      ..+|+++|.+|+|||||+|+|+.....     .+      .+      ..|+|.......   .+..+.|+||||...
T Consensus        12 ~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d   89 (691)
T 1dar_A           12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD   89 (691)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence            468999999999999999999842110     11      11      346665533222   245689999999864

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=97.41  E-value=5.4e-05  Score=81.49  Aligned_cols=58  Identities=22%  Similarity=0.367  Sum_probs=36.1

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcc----c-----------ccCCCCCceeeEEEEEe---CCcEEEEeCCCcc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRM----C-----------PAAPRPGVTRVLKWVRF---GKDLEFLDSPGII  273 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~----~-----------~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~  273 (316)
                      ..++|+++|.+|+|||||+|+|++...    .           ......|+|.+...+.+   +..+.|+||||..
T Consensus       295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHe  370 (1289)
T 3avx_A          295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHA  370 (1289)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHH
T ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChH
Confidence            458999999999999999999986410    0           11134677776532222   3578999999963

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.40  E-value=5.4e-05  Score=73.36  Aligned_cols=60  Identities=23%  Similarity=0.226  Sum_probs=34.4

Q ss_pred             ccceEEeEeccCCCCcchhHHhhhcCcccccCC------CCCcee-eEEEEEe-----CCcEEEEeCCCccc
Q 021210          215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAP------RPGVTR-VLKWVRF-----GKDLEFLDSPGIIP  274 (316)
Q Consensus       215 ~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~------~pgtT~-~~~~~~~-----~~~~~liDTPGi~~  274 (316)
                      +..++|+++|.+|+|||||+|+|.+......+.      .+.++. +...+.+     ...+.++||||+..
T Consensus        29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~  100 (418)
T 2qag_C           29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGD  100 (418)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC----
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhh
Confidence            346789999999999999999999865422210      112222 1111111     12578999999964

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=97.37  E-value=7e-05  Score=78.65  Aligned_cols=24  Identities=25%  Similarity=0.434  Sum_probs=21.6

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      .+|+++|.+|+|||||+|+|+...
T Consensus        20 rnI~IiG~~~~GKTTL~~~Ll~~~   43 (842)
T 1n0u_A           20 RNMSVIAHVDHGKSTLTDSLVQRA   43 (842)
T ss_dssp             EEEEEECCGGGTHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhc
Confidence            579999999999999999998753

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=97.35  E-value=6.7e-05  Score=75.90  Aligned_cols=58  Identities=26%  Similarity=0.392  Sum_probs=29.5

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccc--------c------CCCCCceeeEEEEEe------C--CcEEEEeCCCcccC
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCP--------A------APRPGVTRVLKWVRF------G--KDLEFLDSPGIIPM  275 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~--------v------s~~pgtT~~~~~~~~------~--~~~~liDTPGi~~~  275 (316)
                      .+|+++|.+|+|||||+++|+......        +      ....|+|.......+      +  ..+.|+||||..+.
T Consensus         5 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF   84 (599)
T 3cb4_D            5 RNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDF   84 (599)
T ss_dssp             EEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGGG
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHH
Confidence            479999999999999999998632111        1      112466765332222      1  25789999998653

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.35  E-value=1.9e-05  Score=68.41  Aligned_cols=24  Identities=38%  Similarity=0.569  Sum_probs=21.3

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcC
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      ..+|+++|.+|||||||+|+|.+.
T Consensus        30 ~~~i~i~G~~g~GKTTl~~~l~~~   53 (221)
T 2wsm_A           30 TVAVNIMGAIGSGKTLLIERTIER   53 (221)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHH
Confidence            357999999999999999999864

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=97.34  E-value=7.3e-05  Score=70.41  Aligned_cols=91  Identities=12%  Similarity=0.139  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHhh-cCeEEEEEeCCCCCCCCcH-HHHHHhC--CCCEEEEEEccCCCChHh-HHHHHHH-H--HhcC-ceE
Q 021210          109 KTEKELKDQLKL-MDVVIEVRDARIPLSTTHP-LMDQWLG--NRKRILVLNREDMISMAD-RNAWATY-F--AKQG-TKV  179 (316)
Q Consensus       109 ~~~r~l~~~i~~-aDlIl~VvDar~~~~~~~~-~i~~~l~--~k~~IlVlNK~DLv~~~~-~~~~~~~-~--~~~g-~~v  179 (316)
                      ++.+.+...+.. .++|++|+|+.......+. .+.+.+.  +.+.++|+||+|+.+... ...+.+. .  .+.| ..+
T Consensus       155 ~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v  234 (353)
T 2x2e_A          155 QIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGV  234 (353)
T ss_dssp             HHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEEC
T ss_pred             HHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEE
Confidence            344444555644 4577778888765554443 2555554  679999999999986543 2222110 0  0123 256


Q ss_pred             EEeccccccchhhhHHHHHH
Q 021210          180 IFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       180 i~iSa~~g~gi~~L~~~L~~  199 (316)
                      +++||+++.|+++|.+.+..
T Consensus       235 ~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          235 VNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             CCCCHHHHHTTCCHHHHHHH
T ss_pred             EeCCcccccccccHHHHHHH
Confidence            78999999999998887765

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=97.34  E-value=0.00016  Score=64.76  Aligned_cols=25  Identities=32%  Similarity=0.594  Sum_probs=22.9

Q ss_pred             cceEEeEeccC---------CCCcchhHHhhhcC
Q 021210          216 RAVRAGIVGYP---------NVGKSSLINRLLKR  240 (316)
Q Consensus       216 ~~~~i~ivG~p---------NvGKSTLiN~L~~~  240 (316)
                      ..+||+++|.+         |||||||+|+|.+.
T Consensus        18 ~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~   51 (255)
T 3c5h_A           18 GTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRP   51 (255)
T ss_dssp             SCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred             ceeEEEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence            45899999999         99999999999974

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=97.34  E-value=0.00011  Score=77.28  Aligned_cols=88  Identities=17%  Similarity=0.112  Sum_probs=55.5

Q ss_pred             CCcchhhhhhccccCCcceE--EEec----------------cccccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCC
Q 021210           72 GSIEAYEEECDWADLDADLY--YWTK----------------SLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIP  133 (316)
Q Consensus        72 ~~~g~~~e~e~~~~~d~~~~--~~~~----------------~~~~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~  133 (316)
                      +.|-...|.+.++|++....  .|..                ..-.+-++||| .++...+...+..+|.+|+|+|+.++
T Consensus        56 ~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~liDTPG~-~df~~~~~~~l~~aD~ailVvDa~~g  134 (842)
T 1n0u_A           56 FTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGH-VDFSSEVTAALRVTDGALVVVDTIEG  134 (842)
T ss_dssp             -----------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEEEEEECCCCC-CSSCHHHHHHHHTCSEEEEEEETTTB
T ss_pred             eecCchhhhhcceeEeeceeEEEecccccccccccccccCCCceEEEEECcCc-hhhHHHHHHHHHhCCEEEEEEeCCCC
Confidence            34444456677778776654  3431                11126789999 56777788889999999999999988


Q ss_pred             CCCCcHHHHHH--hCCCCEEEEEEccCCC
Q 021210          134 LSTTHPLMDQW--LGNRKRILVLNREDMI  160 (316)
Q Consensus       134 ~~~~~~~i~~~--l~~k~~IlVlNK~DLv  160 (316)
                      .......+...  ..+.|+++|+||+|+.
T Consensus       135 ~~~qt~~~~~~~~~~~~p~ilviNK~D~~  163 (842)
T 1n0u_A          135 VCVQTETVLRQALGERIKPVVVINKVDRA  163 (842)
T ss_dssp             SCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred             CCHHHHHHHHHHHHcCCCeEEEEECCCcc
Confidence            76544433222  2368999999999986

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.31  E-value=0.00023  Score=67.42  Aligned_cols=80  Identities=8%  Similarity=0.067  Sum_probs=44.1

Q ss_pred             CeEEEEEeC-CCCCCCCcHHHHHHhC-CCCEEEEEEccCCCChHhHHHH----HHHHHhcCceEEEeccccccchhhhHH
Q 021210          122 DVVIEVRDA-RIPLSTTHPLMDQWLG-NRKRILVLNREDMISMADRNAW----ATYFAKQGTKVIFSNGQLGMGTMKLSR  195 (316)
Q Consensus       122 DlIl~VvDa-r~~~~~~~~~i~~~l~-~k~~IlVlNK~DLv~~~~~~~~----~~~~~~~g~~vi~iSa~~g~gi~~L~~  195 (316)
                      |++++++|. +.++...+..+...+. +.|+|+|+||+|+.+..++..+    .+.+...++.++.+||+.|.+-+.+..
T Consensus       147 ~~~vy~I~~~~~~l~~~d~~~~~~l~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~~e~~~~  226 (361)
T 2qag_A          147 HCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDEDEDFKE  226 (361)
T ss_dssp             CEEEEEECSSSSSCCHHHHHHHHHTCS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC---------CHH
T ss_pred             EEEEEEEecCCCCcchhHHHHHHHhccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCcchhHHH
Confidence            568888875 5555544444444444 6799999999999987655432    233334567788999999988433444


Q ss_pred             HHHHhh
Q 021210          196 LAKALA  201 (316)
Q Consensus       196 ~L~~l~  201 (316)
                      ++..+.
T Consensus       227 l~~~i~  232 (361)
T 2qag_A          227 QTRLLK  232 (361)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444443

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=97.27  E-value=0.00022  Score=60.74  Aligned_cols=99  Identities=12%  Similarity=-0.008  Sum_probs=61.5

Q ss_pred             cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-HHHHHh-----CCCCEEEEEEccCCCChHh--HHHHHHHHH
Q 021210          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQWL-----GNRKRILVLNREDMISMAD--RNAWATYFA  173 (316)
Q Consensus       102 ~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-~i~~~l-----~~k~~IlVlNK~DLv~~~~--~~~~~~~~~  173 (316)
                      ++||+ .++.+........+|.+++|+|..+..+..+. .+...+     ...++++|+||+|+.+..+  ..+......
T Consensus        60 Dt~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~  138 (199)
T 2f9l_A           60 DTAGQ-ERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAE  138 (199)
T ss_dssp             ECSSG-GGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred             ECCCc-hhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHH
Confidence            45555 22222233456789999999998765432221 111111     2568999999999964321  122233344


Q ss_pred             hcCceEEEeccccccchhhhHHHHHHhh
Q 021210          174 KQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (316)
Q Consensus       174 ~~g~~vi~iSa~~g~gi~~L~~~L~~l~  201 (316)
                      +.+..++.+|++++.|++++.+.+.+..
T Consensus       139 ~~~~~~~d~Sal~~~~i~~l~~~l~~~~  166 (199)
T 2f9l_A          139 KNNLSFIETSALDSTNVEEAFKNILTEI  166 (199)
T ss_dssp             HTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            5567788899999999999988776543

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=97.26  E-value=0.00019  Score=73.98  Aligned_cols=58  Identities=21%  Similarity=0.296  Sum_probs=38.9

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCccc-----cc------CC------CCCceeeEEEEEe---C-------CcEEEEeC
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMC-----PA------AP------RPGVTRVLKWVRF---G-------KDLEFLDS  269 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~-----~v------s~------~pgtT~~~~~~~~---~-------~~~~liDT  269 (316)
                      ..+|+++|..|+|||||+++|+.....     .+      .+      ..|+|.......+   +       ..+.|+||
T Consensus        10 ~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDT   89 (704)
T 2rdo_7           10 YRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDT   89 (704)
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEeC
Confidence            457999999999999999999743110     11      11      3466665432222   2       46899999


Q ss_pred             CCccc
Q 021210          270 PGIIP  274 (316)
Q Consensus       270 PGi~~  274 (316)
                      ||...
T Consensus        90 PG~~d   94 (704)
T 2rdo_7           90 PGHVD   94 (704)
T ss_pred             CCccc
Confidence            99865

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=97.23  E-value=7.3e-05  Score=75.62  Aligned_cols=59  Identities=25%  Similarity=0.361  Sum_probs=33.0

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccc--------c------CCCCCceeeEE---EEEe---C--CcEEEEeCCCccc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCP--------A------APRPGVTRVLK---WVRF---G--KDLEFLDSPGIIP  274 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~--------v------s~~pgtT~~~~---~~~~---~--~~~~liDTPGi~~  274 (316)
                      ..+|+++|.+|+|||||+|+|+......        +      ....|+|....   ..+.   +  ..+.|+||||...
T Consensus         6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d   85 (600)
T 2ywe_A            6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD   85 (600)
T ss_dssp             EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence            3579999999999999999998632111        0      11246665422   2111   1  2477999999875


Q ss_pred             C
Q 021210          275 M  275 (316)
Q Consensus       275 ~  275 (316)
                      .
T Consensus        86 F   86 (600)
T 2ywe_A           86 F   86 (600)
T ss_dssp             G
T ss_pred             H
Confidence            3

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=97.20  E-value=0.00026  Score=66.42  Aligned_cols=57  Identities=19%  Similarity=0.173  Sum_probs=36.2

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe--CCcEEEEeCCCcccC
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF--GKDLEFLDSPGIIPM  275 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~--~~~~~liDTPGi~~~  275 (316)
                      ||+++|.+|||||||++.+.+..........+.|.......+  .-.+.|+||||--..
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~~~v~LqIWDTAGQErf   59 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFSTLIDLAVMELPGQLNY   59 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEECSSSCEEEEECCSCSSS
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEccEEEEEEEECCCchhc
Confidence            489999999999999998875432211111233433222222  236899999998654

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.13  E-value=3.1e-05  Score=67.55  Aligned_cols=55  Identities=25%  Similarity=0.341  Sum_probs=39.2

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcc-cccCCCCCceeeEEEEEe-CCcEEEEeCCCcc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII  273 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~-~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~  273 (316)
                      .++|+|.+|+|||||+|.|.+... ......++|||....... +.++.++|...|.
T Consensus        21 ~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G~~y~fvs~~~f~   77 (197)
T 3ney_A           21 TLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMT   77 (197)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTTSSCEECCHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeeccccceeccHHHhh
Confidence            489999999999999999997643 244567788887543222 4456666666653

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=97.11  E-value=0.00023  Score=70.60  Aligned_cols=23  Identities=22%  Similarity=0.306  Sum_probs=20.0

Q ss_pred             cceEEeEeccCCCCcchhHHhhh
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLL  238 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~  238 (316)
                      .+..|+++|.+||||||++|.|.
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA  122 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLA  122 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            35679999999999999999998

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=97.05  E-value=0.00066  Score=67.92  Aligned_cols=73  Identities=21%  Similarity=0.126  Sum_probs=50.5

Q ss_pred             cccccchHHH----------HHHHHHHHHhhcCeEEEEEeCCCC-CCCCcHHHHHHhC--CCCEEEEEEccCCCChHhHH
Q 021210          100 VQWYPGHIAK----------TEKELKDQLKLMDVVIEVRDARIP-LSTTHPLMDQWLG--NRKRILVLNREDMISMADRN  166 (316)
Q Consensus       100 i~~~Pgh~~~----------~~r~l~~~i~~aDlIl~VvDar~~-~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~~~  166 (316)
                      +-++||+...          +.+.+...+..+|++|+|+|+... .......+.+.+.  +.++++|+||+|+++..++.
T Consensus       158 lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~~~~el~  237 (550)
T 2qpt_A          158 IIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVETQQLM  237 (550)
T ss_dssp             EEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGSCHHHHH
T ss_pred             EEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCccCHHHHH
Confidence            5577887421          345566778999999999999874 3333344545554  46899999999999877655


Q ss_pred             HHHHHH
Q 021210          167 AWATYF  172 (316)
Q Consensus       167 ~~~~~~  172 (316)
                      +..+.+
T Consensus       238 ~~~~~l  243 (550)
T 2qpt_A          238 RVYGAL  243 (550)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            544433

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=97.03  E-value=8.4e-05  Score=66.11  Aligned_cols=34  Identities=18%  Similarity=0.248  Sum_probs=26.4

Q ss_pred             ceEEeEeccCCCCcchhHHhhh-----cCcccccCCCCC
Q 021210          217 AVRAGIVGYPNVGKSSLINRLL-----KRRMCPAAPRPG  250 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~-----~~~~~~vs~~pg  250 (316)
                      ...++++|++||||||++|.|.     +.+...+..-|+
T Consensus        14 ~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~   52 (262)
T 1yrb_A           14 SMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTG   52 (262)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSS
T ss_pred             eEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            4568999999999999999998     666555554443

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=96.98  E-value=0.00024  Score=66.90  Aligned_cols=87  Identities=8%  Similarity=-0.034  Sum_probs=54.8

Q ss_pred             HHHHHHHHhhcCeEEEEEeCCCCC--CCCcHHHHHHhC--CCCEEEEEEccCCCChHh-HHHHHHH-HHhcCceEEEecc
Q 021210          111 EKELKDQLKLMDVVIEVRDARIPL--STTHPLMDQWLG--NRKRILVLNREDMISMAD-RNAWATY-FAKQGTKVIFSNG  184 (316)
Q Consensus       111 ~r~l~~~i~~aDlIl~VvDar~~~--~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~-~~~~~~~-~~~~g~~vi~iSa  184 (316)
                      ...+...+.++|++|+|+|+....  ......+...+.  +++.++|+||+|+++... ..+..+. ....+..++.+++
T Consensus       163 ~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~  242 (360)
T 3t34_A          163 ENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVN  242 (360)
T ss_dssp             HHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECC
T ss_pred             HHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEE
Confidence            445567789999999999864322  122233444443  578999999999986543 1111111 1123456788999


Q ss_pred             ccccchhhhHHHH
Q 021210          185 QLGMGTMKLSRLA  197 (316)
Q Consensus       185 ~~g~gi~~L~~~L  197 (316)
                      ..+.++++.....
T Consensus       243 ~s~~~i~~~~~~~  255 (360)
T 3t34_A          243 RSQADINKNVDMI  255 (360)
T ss_dssp             CCHHHHHTTCCHH
T ss_pred             CChHHhccCCCHH
Confidence            9988887655443

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.89  E-value=0.0017  Score=56.12  Aligned_cols=78  Identities=13%  Similarity=0.040  Sum_probs=48.8

Q ss_pred             cCeEEEEEeCCCCCCCCcHHHHHHhCCCCEEEEEEccCCCChH--hHHHHHHHHHhc--CceEEEeccccccchhhhHHH
Q 021210          121 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMA--DRNAWATYFAKQ--GTKVIFSNGQLGMGTMKLSRL  196 (316)
Q Consensus       121 aDlIl~VvDar~~~~~~~~~i~~~l~~k~~IlVlNK~DLv~~~--~~~~~~~~~~~~--g~~vi~iSa~~g~gi~~L~~~  196 (316)
                      .+.++.|+|+..+....... ... ..++.++|+||+|+.+..  ..++..+.+...  +..++++||++|.|+++|.+.
T Consensus       140 ~~~~~~v~~~~~~~~~~~~~-~~~-~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~  217 (226)
T 2hf9_A          140 THKRIVVISTTEGDDTIEKH-PGI-MKTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEF  217 (226)
T ss_dssp             CSEEEEEEEGGGCTTTTTTC-HHH-HTTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHH
T ss_pred             cCcEEEEEecCcchhhHhhh-hhH-hhcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHH
Confidence            35567788864332211111 111 257889999999986542  233333444433  467899999999999999887


Q ss_pred             HHHh
Q 021210          197 AKAL  200 (316)
Q Consensus       197 L~~l  200 (316)
                      +.+.
T Consensus       218 l~~~  221 (226)
T 2hf9_A          218 IEKS  221 (226)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=96.86  E-value=0.0014  Score=61.07  Aligned_cols=96  Identities=16%  Similarity=0.077  Sum_probs=63.8

Q ss_pred             HHHHHhCCCCEEEEEEccCCCChHhHHHHHHHHHhcCceEEEeccccccchhhhHHHHHHhh-hhhhhhhcccCCCccce
Q 021210          140 LMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA-SDVNVKRRSKGLLPRAV  218 (316)
Q Consensus       140 ~i~~~l~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l~-~~~~~~r~~~~~~~~~~  218 (316)
                      .+.+++......+|++|.|..+++    ..+..++.++.++.++..+...+..|..++.... +....+...  ..-...
T Consensus        72 rler~l~~~~P~IIltrg~~~pee----lie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~--v~~~g~  145 (314)
T 1ko7_A           72 RMRKLCRPETPAIIVTRDLEPPEE----LIEAAKEHETPLITSKIATTQLMSRLTTFLEHELARTTSLHGVL--VDVYGV  145 (314)
T ss_dssp             HHHHHCCTTCCCEEECTTCCCCHH----HHHHHHHTTCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEESEE--EEETTE
T ss_pred             HHHHHhcCCCCEEEEeCCCCCCHH----HHHHHHHCCCeEEEECCchhHHHHHHHHHHHHhhccceeeeEEE--EEECCE
Confidence            456666666678899999988654    3344555678888888888888888887766521 111111000  000123


Q ss_pred             EEeEeccCCCCcchhHHhhhcCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      -++|.|.+|+||||+.+.|.++.
T Consensus       146 ~vl~~G~sG~GKSt~a~~l~~~g  168 (314)
T 1ko7_A          146 GVLITGDSGIGKSETALELIKRG  168 (314)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHhcC
Confidence            48999999999999999998643

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.82  E-value=0.0001  Score=64.03  Aligned_cols=24  Identities=29%  Similarity=0.458  Sum_probs=21.6

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcC
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      ..+|+++|.+|||||||+|+|...
T Consensus        38 ~~~i~ivG~~gvGKTtl~~~l~~~   61 (226)
T 2hf9_A           38 VVAFDFMGAIGSGKTLLIEKLIDN   61 (226)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Confidence            468999999999999999999864

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=96.79  E-value=0.0021  Score=56.75  Aligned_cols=131  Identities=8%  Similarity=-0.100  Sum_probs=59.2

Q ss_pred             CCCCCCCCcchhhhhhccccCCcceE--EEeccccccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC-CcHHH-
Q 021210           66 NSNNSNGSIEAYEEECDWADLDADLY--YWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST-THPLM-  141 (316)
Q Consensus        66 ~~~~~~~~~g~~~e~e~~~~~d~~~~--~~~~~~~~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~-~~~~i-  141 (316)
                      .+|+--+.-..++||+.-..-+...+  .|.-.... .+.-|-..+....-+.+.+++|.+|+|||+.+.... ...++ 
T Consensus        70 ~fni~tlys~~~~er~~~~~~~~~~~~k~~~~~~~~-~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~  148 (227)
T 3l82_B           70 KFNILILYSTTRKERDRAREEHTSAVNKMFSRHNEG-DDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFS  148 (227)
T ss_dssp             EEEEEECSCC--------------------------------------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHH
T ss_pred             EEEEEEeccCcHHHhhhhhhhhhhhhhhcccccCCC-ccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHH
Confidence            57877777888888887664333322  33322110 111112233222233678999999999999765321 22233 


Q ss_pred             --HHHh------CCCCEEEEEEcc-CCCChHhHHHHHHHH--Hhc--CceEEEeccccccchhhhHHHH
Q 021210          142 --DQWL------GNRKRILVLNRE-DMISMADRNAWATYF--AKQ--GTKVIFSNGQLGMGTMKLSRLA  197 (316)
Q Consensus       142 --~~~l------~~k~~IlVlNK~-DLv~~~~~~~~~~~~--~~~--g~~vi~iSa~~g~gi~~L~~~L  197 (316)
                        ..++      .+.|+++..||. |+...-...+..+.+  .+.  ...+..+||.+|+|+.+=.+.|
T Consensus       149 eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL  217 (227)
T 3l82_B          149 HIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWI  217 (227)
T ss_dssp             HHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHH
T ss_pred             HHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHH
Confidence              2222      245888899996 664322222233222  111  2457889999999977655554

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=96.77  E-value=0.00087  Score=68.54  Aligned_cols=58  Identities=22%  Similarity=0.256  Sum_probs=38.0

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCccc-----cc------CC------CCCceeeEEEEEe---CCcEEEEeCCCccc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMC-----PA------AP------RPGVTRVLKWVRF---GKDLEFLDSPGIIP  274 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~-----~v------s~------~pgtT~~~~~~~~---~~~~~liDTPGi~~  274 (316)
                      ..+|+++|.+|+|||||+++|++....     .+      .+      ..|+|...+...+   ...+.|+||||...
T Consensus         9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~   86 (665)
T 2dy1_A            9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD   86 (665)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred             CcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence            457999999999999999999843211     01      11      1245544333222   34688999999864

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.74  E-value=0.00032  Score=58.91  Aligned_cols=57  Identities=16%  Similarity=0.216  Sum_probs=34.9

Q ss_pred             HHHHHhhcCeEEEEEeCC-CCCCCCc--HHHHHHh--------CCCCEEEEEEccCCCChHhHHHHHH
Q 021210          114 LKDQLKLMDVVIEVRDAR-IPLSTTH--PLMDQWL--------GNRKRILVLNREDMISMADRNAWAT  170 (316)
Q Consensus       114 l~~~i~~aDlIl~VvDar-~~~~~~~--~~i~~~l--------~~k~~IlVlNK~DLv~~~~~~~~~~  170 (316)
                      +...+..+|++|+|+|+. +..+...  ..+..++        .+.|+++|+||+|+.+.....+..+
T Consensus       112 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~  179 (193)
T 2ged_A          112 LKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKD  179 (193)
T ss_dssp             HHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHH
T ss_pred             HHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHH
Confidence            334456699999999997 3211111  1122222        2689999999999987654444433

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=96.73  E-value=0.0018  Score=60.70  Aligned_cols=82  Identities=15%  Similarity=0.030  Sum_probs=51.0

Q ss_pred             HHhhcCeEEEEEeCCCCCCC--CcHHHHHHhCCCCEEEEEEccCCCChH-hHHHHHHHHHh----c-------CceEEEe
Q 021210          117 QLKLMDVVIEVRDARIPLST--THPLMDQWLGNRKRILVLNREDMISMA-DRNAWATYFAK----Q-------GTKVIFS  182 (316)
Q Consensus       117 ~i~~aDlIl~VvDar~~~~~--~~~~i~~~l~~k~~IlVlNK~DLv~~~-~~~~~~~~~~~----~-------g~~vi~i  182 (316)
                      ..+.+|++++|+|+..+...  ....+.    ..+.++++||+|+.+.. ......+.+..    .       ..+++++
T Consensus       165 v~~~~d~vl~v~d~~~~~~~~~i~~~i~----~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~  240 (337)
T 2qm8_A          165 VADLTDFFLVLMLPGAGDELQGIKKGIF----ELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTI  240 (337)
T ss_dssp             HHTTSSEEEEEECSCC------CCTTHH----HHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEE
T ss_pred             HHhhCCEEEEEEcCCCcccHHHHHHHHh----ccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEE
Confidence            45799999999998643210  011111    23568888999986532 22222222221    1       3468899


Q ss_pred             ccccccchhhhHHHHHHhhh
Q 021210          183 NGQLGMGTMKLSRLAKALAS  202 (316)
Q Consensus       183 Sa~~g~gi~~L~~~L~~l~~  202 (316)
                      ||+++.|+++|.+.+.++..
T Consensus       241 Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          241 SGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             BTTTTBSHHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHHH
Confidence            99999999999998887653

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=96.70  E-value=0.00043  Score=65.54  Aligned_cols=98  Identities=14%  Similarity=0.077  Sum_probs=59.0

Q ss_pred             cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCC---------CCcH---HHHHHh-----CCCCEEEEEEccCCCChH-
Q 021210          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLS---------TTHP---LMDQWL-----GNRKRILVLNREDMISMA-  163 (316)
Q Consensus       102 ~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~---------~~~~---~i~~~l-----~~k~~IlVlNK~DLv~~~-  163 (316)
                      +.+|+ .++.+......+.++.||+|+|..+...         ..+.   .+...+     .+.|+++++||+||.... 
T Consensus       199 Dt~GQ-e~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~~ki  277 (353)
T 1cip_A          199 DVGGQ-RSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKI  277 (353)
T ss_dssp             EECCS-GGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHH
T ss_pred             eCCCc-hhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchhhhc
Confidence            34555 3344444456789999999999876321         1111   112222     357899999999984211 


Q ss_pred             ----------------hHHHHHHHHH-----------hcCceEEEeccccccchhhhHHHHHHh
Q 021210          164 ----------------DRNAWATYFA-----------KQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       164 ----------------~~~~~~~~~~-----------~~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                                      ..++..+++.           ..+..++.+||+++.|+.++.+.+...
T Consensus       278 ~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~  341 (353)
T 1cip_A          278 KKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDV  341 (353)
T ss_dssp             TTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHH
Confidence                            1122222332           124567889999999999887765543

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=96.67  E-value=0.0023  Score=59.95  Aligned_cols=79  Identities=6%  Similarity=-0.055  Sum_probs=48.6

Q ss_pred             HHHHhhcCeEEEEEeCCCCCCCCcHHHHHH-------hCCCCEEEEEEccCCCChHhH----HH----HHHHHHh-----
Q 021210          115 KDQLKLMDVVIEVRDARIPLSTTHPLMDQW-------LGNRKRILVLNREDMISMADR----NA----WATYFAK-----  174 (316)
Q Consensus       115 ~~~i~~aDlIl~VvDar~~~~~~~~~i~~~-------l~~k~~IlVlNK~DLv~~~~~----~~----~~~~~~~-----  174 (316)
                      ....+.++.+|+|+|..+.....-..+.++       ..+.|++++.||+||.+.++.    ++    ..+.+.+     
T Consensus        67 ~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~  146 (331)
T 3r7w_B           67 ERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDG  146 (331)
T ss_dssp             HHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSC
T ss_pred             hhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccc
Confidence            456789999999999987611111122221       236789999999999875431    11    1122333     


Q ss_pred             cCceEEEeccccccchhhhH
Q 021210          175 QGTKVIFSNGQLGMGTMKLS  194 (316)
Q Consensus       175 ~g~~vi~iSa~~g~gi~~L~  194 (316)
                      .+..++.+||++ .++.+..
T Consensus       147 ~~i~f~eTSAkd-~nV~eAF  165 (331)
T 3r7w_B          147 VQVSFYLTSIFD-HSIYEAF  165 (331)
T ss_dssp             CCEEEECCCSSS-SHHHHHH
T ss_pred             cCceEEEeccCC-CcHHHHH
Confidence            245678899986 4665543

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.59  E-value=0.0028  Score=61.81  Aligned_cols=60  Identities=20%  Similarity=0.283  Sum_probs=38.2

Q ss_pred             EEeEeccCCCCcchhHHhhhc-----------------CcccccCCC-CCceeeEE-EE---Ee----CC--cEEEEeCC
Q 021210          219 RAGIVGYPNVGKSSLINRLLK-----------------RRMCPAAPR-PGVTRVLK-WV---RF----GK--DLEFLDSP  270 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~-----------------~~~~~vs~~-pgtT~~~~-~~---~~----~~--~~~liDTP  270 (316)
                      -|+|+|.+++|||+|+|.|++                 .....+++. -.+|+.+- |.   .+    +.  .+.|+||.
T Consensus        69 vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllDTE  148 (457)
T 4ido_A           69 AVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQ  148 (457)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEEEC
T ss_pred             EEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEecc
Confidence            478999999999999997752                 122333322 22566642 21   11    12  38899999


Q ss_pred             CcccCCCC
Q 021210          271 GIIPMRIS  278 (316)
Q Consensus       271 Gi~~~~~~  278 (316)
                      |+.+....
T Consensus       149 G~~d~~~~  156 (457)
T 4ido_A          149 GTFDSQST  156 (457)
T ss_dssp             CBTCTTCC
T ss_pred             CCCCcccC
Confidence            99866543

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=96.56  E-value=0.00077  Score=63.99  Aligned_cols=99  Identities=11%  Similarity=0.052  Sum_probs=56.2

Q ss_pred             ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC---------CCCcH---HHHHHh-----CCCCEEEEEEccCCCCh-
Q 021210          101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL---------STTHP---LMDQWL-----GNRKRILVLNREDMISM-  162 (316)
Q Consensus       101 ~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~---------~~~~~---~i~~~l-----~~k~~IlVlNK~DLv~~-  162 (316)
                      -+.+|+ ..+.+......+.++.+|+|+|..+..         .+.+.   .+...+     .+.|+|+++||+||... 
T Consensus       206 ~Dt~Gq-~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~k  284 (362)
T 1zcb_A          206 VDVGGQ-RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEK  284 (362)
T ss_dssp             EEECC--------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHH
T ss_pred             Eeccch-hhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhh
Confidence            345666 444444445678999999999987631         01111   112222     35689999999998521 


Q ss_pred             -----------------HhHHHHHHHH----H-------hcCceEEEeccccccchhhhHHHHHHh
Q 021210          163 -----------------ADRNAWATYF----A-------KQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       163 -----------------~~~~~~~~~~----~-------~~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                                       ...++..+++    .       ..+..++++||+++.|++.+.+.+...
T Consensus       285 i~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~  350 (362)
T 1zcb_A          285 VQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDT  350 (362)
T ss_dssp             TTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHH
Confidence                             1122222222    1       123567889999999999887766543

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=96.49  E-value=0.00071  Score=57.16  Aligned_cols=37  Identities=27%  Similarity=0.323  Sum_probs=27.2

Q ss_pred             EEeEeccCCCCcchhHHhhhcCccc-ccCCCCCceeeE
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVL  255 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~-~vs~~pgtT~~~  255 (316)
                      .++++|.+|+|||||+|.|.+.... ....+..+||..
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~   44 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPP   44 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCC
Confidence            4899999999999999999875321 223455666654

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=96.43  E-value=0.0009  Score=65.02  Aligned_cols=23  Identities=22%  Similarity=0.296  Sum_probs=20.6

Q ss_pred             ceEEeEeccCCCCcchhHHhhhc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~  239 (316)
                      +..|+++|.+||||||+++.|..
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~  121 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLAR  121 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45699999999999999999985

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=96.35  E-value=0.0044  Score=57.02  Aligned_cols=77  Identities=6%  Similarity=0.019  Sum_probs=40.9

Q ss_pred             cCeEEEEEeCC-CCCCCCcHHHHHHhC-CCCEEEEEEccCCCChHhHH----HHHHHHHhcCceEEEeccccccchhhhH
Q 021210          121 MDVVIEVRDAR-IPLSTTHPLMDQWLG-NRKRILVLNREDMISMADRN----AWATYFAKQGTKVIFSNGQLGMGTMKLS  194 (316)
Q Consensus       121 aDlIl~VvDar-~~~~~~~~~i~~~l~-~k~~IlVlNK~DLv~~~~~~----~~~~~~~~~g~~vi~iSa~~g~gi~~L~  194 (316)
                      +++++++++.. .++...+..+.+.+. ..++++|+||+|+.+..+..    +..+++...+..++.+||++| |++++.
T Consensus       127 a~~ll~ldePt~~~Ld~~~~~~l~~l~~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f  205 (301)
T 2qnr_A          127 VHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDF  205 (301)
T ss_dssp             CCEEEEEECSSSSSCCHHHHHHHHHHTTTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------C
T ss_pred             hhheeeeecCcccCCCHHHHHHHHHHHhcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHH
Confidence            44566666543 223333333333333 45899999999998765432    334445566788889999999 988876


Q ss_pred             HHHH
Q 021210          195 RLAK  198 (316)
Q Consensus       195 ~~L~  198 (316)
                      ..+.
T Consensus       206 ~~l~  209 (301)
T 2qnr_A          206 KEQT  209 (301)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=96.15  E-value=0.0081  Score=50.67  Aligned_cols=84  Identities=13%  Similarity=0.014  Sum_probs=54.1

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCCcH-HHHH-H---h-CCCCEEEEEEccCCCChHh--HHHHHHHHHhcCceEEEeccccc
Q 021210          116 DQLKLMDVVIEVRDARIPLSTTHP-LMDQ-W---L-GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLG  187 (316)
Q Consensus       116 ~~i~~aDlIl~VvDar~~~~~~~~-~i~~-~---l-~~k~~IlVlNK~DLv~~~~--~~~~~~~~~~~g~~vi~iSa~~g  187 (316)
                      .....+|.+++|+|..+..+..+. .+.. +   . ...++++++||+||.+..+  .....+...+.+..++.+|++++
T Consensus        97 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~  176 (191)
T 1oix_A           97 AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDS  176 (191)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTC
T ss_pred             HHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCC
Confidence            446778999999998754322111 1111 1   1 2568999999999864321  12222334445667788999999


Q ss_pred             cchhhhHHHHHH
Q 021210          188 MGTMKLSRLAKA  199 (316)
Q Consensus       188 ~gi~~L~~~L~~  199 (316)
                      .|++++.+.+.+
T Consensus       177 ~~v~~l~~~l~~  188 (191)
T 1oix_A          177 TNVEAAFQTILT  188 (191)
T ss_dssp             TTHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH
Confidence            999998877654

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.14  E-value=0.0054  Score=59.27  Aligned_cols=76  Identities=9%  Similarity=0.001  Sum_probs=41.3

Q ss_pred             cCeEEEEEeCC-CCCCCCcHHHHHHhC-CCCEEEEEEccCCCChHhHHH----HHHHHHhcCceEEEeccccccchhhhH
Q 021210          121 MDVVIEVRDAR-IPLSTTHPLMDQWLG-NRKRILVLNREDMISMADRNA----WATYFAKQGTKVIFSNGQLGMGTMKLS  194 (316)
Q Consensus       121 aDlIl~VvDar-~~~~~~~~~i~~~l~-~k~~IlVlNK~DLv~~~~~~~----~~~~~~~~g~~vi~iSa~~g~gi~~L~  194 (316)
                      ++++|++++.. .++...+..+.+.+. +.++|+|+||+|+++..++..    ..+.+...++.++.+|++.+.++.++.
T Consensus       139 ~~vlL~ldePt~~~L~~~d~~~lk~L~~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~  218 (418)
T 2qag_C          139 VQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLV  218 (418)
T ss_dssp             CCEEEEECCC-CCSCCHHHHHHHHHHTTTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC-----------
T ss_pred             eeEEEEEecCcccCCCHHHHHHHHHHhccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHH
Confidence            45677776654 455544444444443 678999999999998765443    334455567888889999988887654


Q ss_pred             HH
Q 021210          195 RL  196 (316)
Q Consensus       195 ~~  196 (316)
                      ..
T Consensus       219 ~~  220 (418)
T 2qag_C          219 KK  220 (418)
T ss_dssp             --
T ss_pred             HH
Confidence            43

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.02  E-value=0.00083  Score=57.86  Aligned_cols=36  Identities=25%  Similarity=0.225  Sum_probs=27.3

Q ss_pred             EeEeccCCCCcchhHHhhhcCccc-ccCCCCCceeeE
Q 021210          220 AGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVL  255 (316)
Q Consensus       220 i~ivG~pNvGKSTLiN~L~~~~~~-~vs~~pgtT~~~  255 (316)
                      |+|+|.+||||+||++.|+..... ..-.++.|||..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~p   40 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTP   40 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCC
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCC
Confidence            689999999999999999865422 223467788764

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=96.00  E-value=0.0057  Score=56.45  Aligned_cols=132  Identities=8%  Similarity=-0.087  Sum_probs=62.3

Q ss_pred             CCCCCCCCcchhhhhhccccCCcceE--EEeccccccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC-cHHHH
Q 021210           66 NSNNSNGSIEAYEEECDWADLDADLY--YWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT-HPLMD  142 (316)
Q Consensus        66 ~~~~~~~~~g~~~e~e~~~~~d~~~~--~~~~~~~~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~-~~~i~  142 (316)
                      .+|+--+.-..++||+.-...+...+  .|.-.... .+.-|-..+....-+.+.+++|.+|+|||+.+..... ..++.
T Consensus       155 ~fni~tLYs~tr~ER~r~~~e~~~~~~k~f~~~~~~-~~~~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~  233 (312)
T 3l2o_B          155 KFNILILYSTTRKERDRAREEHTSAVNKMFSRHNEG-DDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFS  233 (312)
T ss_dssp             EEEEEECSCCCC-------------------------------CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHH
T ss_pred             eEEEEEeccccHHHHhhhhhhhhhhhhhhccccCCC-CcCCCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHH
Confidence            57766677777888887665444333  44322210 0000111222222336789999999999997654321 12222


Q ss_pred             ---HH------hCCCCEEEEEEc-cCCCChHhHHHHHHHHH--hc--CceEEEeccccccchhhhHHHHH
Q 021210          143 ---QW------LGNRKRILVLNR-EDMISMADRNAWATYFA--KQ--GTKVIFSNGQLGMGTMKLSRLAK  198 (316)
Q Consensus       143 ---~~------l~~k~~IlVlNK-~DLv~~~~~~~~~~~~~--~~--g~~vi~iSa~~g~gi~~L~~~L~  198 (316)
                         .+      +.+.|+++..|| -|+...-...+..+.+.  +.  ...+..+||.+|+|+.+=.+.|.
T Consensus       234 eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~  303 (312)
T 3l2o_B          234 HIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWIL  303 (312)
T ss_dssp             HHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHH
T ss_pred             HHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHH
Confidence               11      346789999997 47753322223333221  11  24578999999999777555544

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=95.92  E-value=0.0074  Score=60.29  Aligned_cols=58  Identities=21%  Similarity=0.370  Sum_probs=36.2

Q ss_pred             EEeEeccCCCCcchhHHhhhcCccc---------------ccC------CCCCceeeE---EEEEeCCcEEEEeCCCccc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMC---------------PAA------PRPGVTRVL---KWVRFGKDLEFLDSPGIIP  274 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~---------------~vs------~~pgtT~~~---~~~~~~~~~~liDTPGi~~  274 (316)
                      +|+|+|...+|||||.-+|+-....               .+.      ..-|+|...   ...+.+..+.||||||-.+
T Consensus        33 NiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHvD  112 (548)
T 3vqt_A           33 TFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQD  112 (548)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGGG
T ss_pred             eEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcHH
Confidence            6999999999999999999721110               111      123555442   3334466789999999987


Q ss_pred             CC
Q 021210          275 MR  276 (316)
Q Consensus       275 ~~  276 (316)
                      +.
T Consensus       113 F~  114 (548)
T 3vqt_A          113 FS  114 (548)
T ss_dssp             CS
T ss_pred             HH
Confidence            63

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=95.75  E-value=0.0095  Score=60.20  Aligned_cols=23  Identities=26%  Similarity=0.380  Sum_probs=20.9

Q ss_pred             EEeEeccCCCCcchhHHhhhcCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      .++++|.+|+|||||+|+|.|..
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC
T ss_pred             eEEEECCCCChHHHHHHHHhCCC
Confidence            38999999999999999999853

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=95.67  E-value=0.024  Score=50.75  Aligned_cols=64  Identities=22%  Similarity=0.269  Sum_probs=38.9

Q ss_pred             cccccchH------HHHHHHHHHHH--hhcCeEEEEEeCCCC-CCCCcHHHHHHh----CC---CCEEEEEEccCCCChH
Q 021210          100 VQWYPGHI------AKTEKELKDQL--KLMDVVIEVRDARIP-LSTTHPLMDQWL----GN---RKRILVLNREDMISMA  163 (316)
Q Consensus       100 i~~~Pgh~------~~~~r~l~~~i--~~aDlIl~VvDar~~-~~~~~~~i~~~l----~~---k~~IlVlNK~DLv~~~  163 (316)
                      +-++||+.      .++.+.+...+  ..+|++|+|+|.... +...+..+...+    +.   +|+++|+||+|+.+..
T Consensus        91 iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~  170 (270)
T 1h65_A           91 IIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD  170 (270)
T ss_dssp             EEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred             EEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence            56678872      23344444332  379999999887542 222222333333    22   5899999999998654

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=95.54  E-value=0.0047  Score=57.79  Aligned_cols=96  Identities=13%  Similarity=0.111  Sum_probs=58.0

Q ss_pred             ccchHHHHHHHHHHHHhhcCeEEEEEeCCC------CCCCCcH------HHHHHh-----CCCCEEEEEEccCCCChH--
Q 021210          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARI------PLSTTHP------LMDQWL-----GNRKRILVLNREDMISMA--  163 (316)
Q Consensus       103 ~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~------~~~~~~~------~i~~~l-----~~k~~IlVlNK~DLv~~~--  163 (316)
                      ..|. .++.+......+.++.+|+|+|...      ..+..+.      .+...+     .+.|+++++||+||....  
T Consensus       174 tgGQ-e~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~~~ki~  252 (327)
T 3ohm_A          174 VGGQ-RSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIM  252 (327)
T ss_dssp             ECCS-HHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHHHHHTT
T ss_pred             cCCc-hhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhhhhhhc
Confidence            3444 5555555567899999999997651      0112221      122222     357899999999985321  


Q ss_pred             ----------------hHHHHHHHH----H------hcCceEEEeccccccchhhhHHHHHH
Q 021210          164 ----------------DRNAWATYF----A------KQGTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       164 ----------------~~~~~~~~~----~------~~g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                                      ..++-.+++    .      +.++.+.++||+++.|++.+...+.+
T Consensus       253 ~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~  314 (327)
T 3ohm_A          253 YSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKD  314 (327)
T ss_dssp             TSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHH
Confidence                            122222332    1      12345778999999999887766554

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=95.44  E-value=0.0049  Score=52.30  Aligned_cols=23  Identities=35%  Similarity=0.702  Sum_probs=20.7

Q ss_pred             EEeEeccCCCCcchhHHhhhcCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      +++++|.+|+|||||++.|.+.-
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l   24 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999998754

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=95.40  E-value=0.0033  Score=53.88  Aligned_cols=24  Identities=29%  Similarity=0.416  Sum_probs=20.7

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      ..|+++|.+|+||||+.+.|....
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhC
Confidence            348999999999999999998643

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=95.40  E-value=0.028  Score=54.66  Aligned_cols=23  Identities=22%  Similarity=0.375  Sum_probs=20.7

Q ss_pred             cceEEeEeccCCCCcchhHHhhh
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLL  238 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~  238 (316)
                      .+..|+++|.+|+||||+++.|.
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA  121 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLA  121 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHH
Confidence            35679999999999999999997

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=95.37  E-value=0.0059  Score=52.67  Aligned_cols=23  Identities=22%  Similarity=0.297  Sum_probs=20.8

Q ss_pred             EEeEeccCCCCcchhHHhhhcCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      -++++|.+|+|||||++.|.+..
T Consensus        10 ~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A           10 LIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHST
T ss_pred             EEEEECcCCCCHHHHHHHHHhhC
Confidence            48999999999999999998764

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=95.37  E-value=0.011  Score=50.89  Aligned_cols=24  Identities=33%  Similarity=0.416  Sum_probs=21.0

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcC
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      +..++|+|.+|+|||||++.|.+.
T Consensus        22 g~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           22 RQLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            456999999999999999998753

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=95.34  E-value=0.0038  Score=59.00  Aligned_cols=96  Identities=14%  Similarity=0.061  Sum_probs=54.6

Q ss_pred             ccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC------CCCc--HH----HHHHh-----CCCCEEEEEEccCCCChH--
Q 021210          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPL------STTH--PL----MDQWL-----GNRKRILVLNREDMISMA--  163 (316)
Q Consensus       103 ~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~------~~~~--~~----i~~~l-----~~k~~IlVlNK~DLv~~~--  163 (316)
                      ..|. .++.+......+.++.+|+|+|.....      ...+  ..    +....     .+.|+++|.||+||....  
T Consensus       190 taGQ-e~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~k~~  268 (354)
T 2xtz_A          190 VGGQ-RNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVL  268 (354)
T ss_dssp             ECCS-TTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHTT
T ss_pred             CCCc-hhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchhhhhcc
Confidence            3444 334444445678899999999986110      1111  11    11222     356899999999984211  


Q ss_pred             ---------------------hHHHHHHH----HHh------------cCceEEEeccccccchhhhHHHHHH
Q 021210          164 ---------------------DRNAWATY----FAK------------QGTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       164 ---------------------~~~~~~~~----~~~------------~g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                                           ..++-.++    |.+            ....++.+||+++.|++++.+.+.+
T Consensus       269 ~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~  341 (354)
T 2xtz_A          269 DVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDE  341 (354)
T ss_dssp             TSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHH
Confidence                                 01121222    211            1234578999999999888766544

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=95.34  E-value=0.0051  Score=52.78  Aligned_cols=22  Identities=27%  Similarity=0.513  Sum_probs=20.0

Q ss_pred             EEeEeccCCCCcchhHHhhhcC
Q 021210          219 RAGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      .++|+|.+|+|||||+|.|.+.
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~~   27 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQE   27 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4899999999999999999863

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=95.16  E-value=0.0042  Score=63.16  Aligned_cols=57  Identities=19%  Similarity=0.344  Sum_probs=37.7

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcc-----ccc------CCC------CCceeeEE---EEEeCCcEEEEeCCCcccC
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRM-----CPA------APR------PGVTRVLK---WVRFGKDLEFLDSPGIIPM  275 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~-----~~v------s~~------pgtT~~~~---~~~~~~~~~liDTPGi~~~  275 (316)
                      +|+|+|...+|||||.-+|+....     ..+      .+.      -|+|....   ..+.+..+.||||||-.++
T Consensus         4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF   80 (638)
T 3j25_A            4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF   80 (638)
T ss_dssp             CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHH
Confidence            589999999999999999873211     111      111      15555432   2233567899999998765

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=95.12  E-value=0.015  Score=54.57  Aligned_cols=59  Identities=17%  Similarity=0.157  Sum_probs=38.0

Q ss_pred             cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC------CCCcH------HHHHH-----hCCCCEEEEEEccCCCC
Q 021210          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL------STTHP------LMDQW-----LGNRKRILVLNREDMIS  161 (316)
Q Consensus       102 ~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~------~~~~~------~i~~~-----l~~k~~IlVlNK~DLv~  161 (316)
                      +..|+ .++.+......+.++.+|+|+|.....      ...+.      .+...     +.+.|+++++||+||..
T Consensus       167 DtaGQ-e~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~~  242 (340)
T 4fid_A          167 DVGGQ-RSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLFE  242 (340)
T ss_dssp             ECCSC-HHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHHH
T ss_pred             cCCCc-ccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhhh
Confidence            34555 666666667789999999999986211      11111      11122     23578999999999853

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=95.07  E-value=0.022  Score=54.00  Aligned_cols=49  Identities=18%  Similarity=0.195  Sum_probs=34.0

Q ss_pred             CCCEEEEEEccC--CCC---hHhHHHHHHHHHhcCceEEEeccccccchhhhHH
Q 021210          147 NRKRILVLNRED--MIS---MADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSR  195 (316)
Q Consensus       147 ~k~~IlVlNK~D--Lv~---~~~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~  195 (316)
                      .+|++++.||+|  +.+   ....+...++....|.+++++||+.+.++.+|.+
T Consensus       201 ~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~el~eL~~  254 (368)
T 2dby_A          201 AKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARLEAELAELSG  254 (368)
T ss_dssp             GSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHHHHHTSCH
T ss_pred             cCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEeechhHHHHHHhch
Confidence            489999999997  433   2223444455555678899999998877766543

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=95.02  E-value=0.0094  Score=57.31  Aligned_cols=57  Identities=16%  Similarity=0.173  Sum_probs=35.2

Q ss_pred             ccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC------CCCcH--H----HHHHh-----CCCCEEEEEEccCCC
Q 021210          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPL------STTHP--L----MDQWL-----GNRKRILVLNREDMI  160 (316)
Q Consensus       103 ~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~------~~~~~--~----i~~~l-----~~k~~IlVlNK~DLv  160 (316)
                      ..|. .++.+......+.++.+|+|+|..+..      ...+.  .    +..+.     .+.|+++|+||+||.
T Consensus       224 taGQ-e~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~  297 (402)
T 1azs_C          224 VGGQ-RDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLL  297 (402)
T ss_dssp             ECCS-GGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHH
T ss_pred             cchh-hhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhh
Confidence            3444 444444456678999999999987610      01111  1    12222     246899999999984

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=94.99  E-value=0.011  Score=49.59  Aligned_cols=23  Identities=26%  Similarity=0.294  Sum_probs=20.6

Q ss_pred             eEEeEeccCCCCcchhHHhhhcC
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      -.++++|.+|+|||||++.|.+.
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            35899999999999999999865

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=94.95  E-value=0.0074  Score=52.98  Aligned_cols=23  Identities=39%  Similarity=0.382  Sum_probs=20.9

Q ss_pred             EEeEeccCCCCcchhHHhhhcCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      -++++|.+|+|||||++.|.+..
T Consensus        18 ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           18 LYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            48999999999999999999754

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=94.92  E-value=0.0079  Score=51.67  Aligned_cols=23  Identities=30%  Similarity=0.369  Sum_probs=20.4

Q ss_pred             EEeEeccCCCCcchhHHhhhcCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      .++++|.+|+|||||+|.|.+..
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            48999999999999999998743

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=94.81  E-value=0.0088  Score=50.64  Aligned_cols=22  Identities=32%  Similarity=0.320  Sum_probs=20.0

Q ss_pred             EEeEeccCCCCcchhHHhhhcC
Q 021210          219 RAGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      .++++|.+|+|||||++.|.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            4899999999999999999864

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=94.73  E-value=0.0095  Score=51.88  Aligned_cols=23  Identities=39%  Similarity=0.515  Sum_probs=20.4

Q ss_pred             EEeEeccCCCCcchhHHhhhcCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      .++|+|.+|+|||||++.|.+..
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            38999999999999999998743

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=94.52  E-value=0.06  Score=47.91  Aligned_cols=63  Identities=17%  Similarity=0.168  Sum_probs=39.2

Q ss_pred             cccccchH------HHHHHHHHHHH--hhcCeEEEEEeCCCCC-CCCcHHHHHHhC-------CCCEEEEEEccCCCCh
Q 021210          100 VQWYPGHI------AKTEKELKDQL--KLMDVVIEVRDARIPL-STTHPLMDQWLG-------NRKRILVLNREDMISM  162 (316)
Q Consensus       100 i~~~Pgh~------~~~~r~l~~~i--~~aDlIl~VvDar~~~-~~~~~~i~~~l~-------~k~~IlVlNK~DLv~~  162 (316)
                      +-++||+.      ..+.+.++..+  ..+|++|+|+|....- ...+..+.+.+.       .+|+++|+||+|+.+.
T Consensus        88 liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~  166 (262)
T 3def_A           88 IIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP  166 (262)
T ss_dssp             EEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred             EEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence            66778872      34555555444  3789999998875432 222323333332       2489999999999743

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=94.36  E-value=0.014  Score=51.61  Aligned_cols=23  Identities=26%  Similarity=0.288  Sum_probs=20.7

Q ss_pred             EEeEeccCCCCcchhHHhhhcCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      .++++|.+|+|||||++.|.+-.
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            48999999999999999999754

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=94.33  E-value=0.014  Score=51.16  Aligned_cols=23  Identities=30%  Similarity=0.293  Sum_probs=20.6

Q ss_pred             EEeEeccCCCCcchhHHhhhcCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      .++++|.+|+|||||++.|.+-.
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            48999999999999999999754

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=94.30  E-value=0.017  Score=49.35  Aligned_cols=24  Identities=29%  Similarity=0.433  Sum_probs=21.0

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcC
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      +..++++|.+|+|||||++.|.+.
T Consensus         6 ~~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            6 PFVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999999864

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=94.29  E-value=0.034  Score=54.97  Aligned_cols=76  Identities=17%  Similarity=0.111  Sum_probs=47.8

Q ss_pred             hcCeEEEEEeCCCCCCCCcHHHHHHhC-CCCE-EEEEEccCCCChHh-HHHHHHHHHhcCce------------------
Q 021210          120 LMDVVIEVRDARIPLSTTHPLMDQWLG-NRKR-ILVLNREDMISMAD-RNAWATYFAKQGTK------------------  178 (316)
Q Consensus       120 ~aDlIl~VvDar~~~~~~~~~i~~~l~-~k~~-IlVlNK~DLv~~~~-~~~~~~~~~~~g~~------------------  178 (316)
                      .+|.+++|+|+..+..  ...+...+. ..++ ++|+||+|...... ...+.+   ..|.+                  
T Consensus       213 ~pd~vllVvDa~~g~~--~~~~a~~~~~~~~i~gvVlNK~D~~~~~g~~l~~~~---~~g~PI~fig~ge~~~dl~~f~~  287 (504)
T 2j37_W          213 QPDNIVYVMDASIGQA--CEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVA---ATKSPIIFIGTGEHIDDFEPFKT  287 (504)
T ss_dssp             CCSEEEEEEETTCCTT--HHHHHHHHHHHHCCCCEEEECTTSCCCCTHHHHHHH---HHCCCEEEEECSSSTTCEECCTH
T ss_pred             cCceEEEEEecccccc--HHHHHHHHHhhcCceEEEEeCCccccchHHHHHHHH---HhCCCeEEeccccchhhhhccCc
Confidence            7899999999987643  223333332 2464 89999999875432 112222   22222                  


Q ss_pred             EEEeccccccc-hhhhHHHHHHh
Q 021210          179 VIFSNGQLGMG-TMKLSRLAKAL  200 (316)
Q Consensus       179 vi~iSa~~g~g-i~~L~~~L~~l  200 (316)
                      ..++|+..|.| +.+|.+.+.+.
T Consensus       288 ~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          288 QPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             HHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             ceeeehhcCCCcHHHHHHHHHHH
Confidence            23568888988 88888776654

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=94.27  E-value=0.015  Score=48.45  Aligned_cols=20  Identities=20%  Similarity=0.390  Sum_probs=17.6

Q ss_pred             EEeEeccCCCCcchhHHhhh
Q 021210          219 RAGIVGYPNVGKSSLINRLL  238 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~  238 (316)
                      -++++|.+|+|||||++.+.
T Consensus        11 i~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            48999999999999999644

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=94.27  E-value=0.034  Score=57.14  Aligned_cols=57  Identities=21%  Similarity=0.310  Sum_probs=33.2

Q ss_pred             EEeEeccCCCCcchhHHhhhcCccc-----cc------------CCCCCceeeE---EEEEeC-------CcEEEEeCCC
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMC-----PA------------APRPGVTRVL---KWVRFG-------KDLEFLDSPG  271 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~-----~v------------s~~pgtT~~~---~~~~~~-------~~~~liDTPG  271 (316)
                      +|+|+|....|||||.-+|+.....     .+            ...-|+|...   ...+.+       ..+.||||||
T Consensus        15 Ni~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPG   94 (709)
T 4fn5_A           15 NIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPG   94 (709)
T ss_dssp             EEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCCS
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCC
Confidence            6999999999999999998732110     11            1123555543   222221       2478999999


Q ss_pred             cccC
Q 021210          272 IIPM  275 (316)
Q Consensus       272 i~~~  275 (316)
                      -.++
T Consensus        95 HvDF   98 (709)
T 4fn5_A           95 HVDF   98 (709)
T ss_dssp             CTTC
T ss_pred             Cccc
Confidence            9865

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=94.20  E-value=0.018  Score=48.71  Aligned_cols=24  Identities=21%  Similarity=0.368  Sum_probs=20.9

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      ..++++|.+|+||||+++.|.+..
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            358999999999999999998653

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=94.19  E-value=0.014  Score=50.79  Aligned_cols=22  Identities=27%  Similarity=0.395  Sum_probs=15.0

Q ss_pred             EEeEeccCCCCcchhHHhhh-cC
Q 021210          219 RAGIVGYPNVGKSSLINRLL-KR  240 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~-~~  240 (316)
                      .++++|.+|+|||||++.|. +.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             EEEEECSCC----CHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            48999999999999999999 64

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=94.14  E-value=0.016  Score=49.15  Aligned_cols=22  Identities=18%  Similarity=0.490  Sum_probs=19.8

Q ss_pred             EEeEeccCCCCcchhHHhhhcC
Q 021210          219 RAGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      .++|+|.+|+|||||++.|++.
T Consensus         8 ~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            8 LLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHh
Confidence            4899999999999999999864

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=94.07  E-value=0.019  Score=50.82  Aligned_cols=23  Identities=39%  Similarity=0.522  Sum_probs=20.8

Q ss_pred             EEeEeccCCCCcchhHHhhhcCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      .++++|.+|+|||||++.|.+-.
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            48999999999999999999754

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=94.00  E-value=0.017  Score=48.41  Aligned_cols=21  Identities=38%  Similarity=0.346  Sum_probs=19.2

Q ss_pred             EEeEeccCCCCcchhHHhhhc
Q 021210          219 RAGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~  239 (316)
                      .++++|.+|+|||||++.|.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            378999999999999999975

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=93.99  E-value=0.02  Score=50.79  Aligned_cols=23  Identities=22%  Similarity=0.209  Sum_probs=20.9

Q ss_pred             EEeEeccCCCCcchhHHhhhcCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      .++++|.+|+|||||++.|.+-.
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            48999999999999999999754

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=93.98  E-value=0.018  Score=53.30  Aligned_cols=22  Identities=41%  Similarity=0.567  Sum_probs=20.1

Q ss_pred             EEeEeccCCCCcchhHHhhhcC
Q 021210          219 RAGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      .++|+|.+|+|||||++.|.+-
T Consensus       128 ~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          128 CLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhhh
Confidence            5899999999999999999863

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=93.94  E-value=0.019  Score=51.40  Aligned_cols=23  Identities=35%  Similarity=0.314  Sum_probs=20.7

Q ss_pred             EEeEeccCCCCcchhHHhhhcCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      .++++|.+|+|||||++.|.+-.
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48999999999999999999754

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=93.94  E-value=0.018  Score=47.35  Aligned_cols=22  Identities=27%  Similarity=0.327  Sum_probs=19.8

Q ss_pred             EEeEeccCCCCcchhHHhhhcC
Q 021210          219 RAGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      .|+++|.+|+||||+.+.|.+.
T Consensus         6 ~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            6 NIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999763

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=93.92  E-value=0.02  Score=51.61  Aligned_cols=23  Identities=22%  Similarity=0.296  Sum_probs=20.7

Q ss_pred             EEeEeccCCCCcchhHHhhhcCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      .++++|.+|+|||||++.|.+-.
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            48999999999999999999754

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=93.92  E-value=0.02  Score=50.98  Aligned_cols=23  Identities=17%  Similarity=0.215  Sum_probs=20.7

Q ss_pred             EEeEeccCCCCcchhHHhhhcCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      .++++|.+|+|||||++.|.+-.
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            37999999999999999999753

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=93.92  E-value=0.024  Score=49.34  Aligned_cols=28  Identities=14%  Similarity=-0.028  Sum_probs=22.8

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccCC
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAP  247 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~  247 (316)
                      .++++|.+|+|||||++.|.+- ....+.
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl-~p~~G~   51 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ-ALQSKQ   51 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH-HHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC-CCcCCe
Confidence            3899999999999999999986 433333

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=93.92  E-value=0.021  Score=50.89  Aligned_cols=23  Identities=35%  Similarity=0.439  Sum_probs=20.8

Q ss_pred             EEeEeccCCCCcchhHHhhhcCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      .++++|.+|+|||||++.|.+-.
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            48999999999999999999753

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=93.81  E-value=0.021  Score=51.58  Aligned_cols=23  Identities=30%  Similarity=0.365  Sum_probs=20.7

Q ss_pred             EEeEeccCCCCcchhHHhhhcCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      .++++|.+|+|||||++.|.+-.
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            48999999999999999999754

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=93.80  E-value=0.023  Score=49.99  Aligned_cols=23  Identities=22%  Similarity=0.359  Sum_probs=20.8

Q ss_pred             EEeEeccCCCCcchhHHhhhcCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      .++++|..|+|||||++.|.+-.
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48999999999999999999754

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=93.79  E-value=0.022  Score=49.85  Aligned_cols=23  Identities=17%  Similarity=0.300  Sum_probs=20.6

Q ss_pred             EEeEeccCCCCcchhHHhhhcCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      .++++|..|+|||||++.|.+-.
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            38999999999999999999754

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=93.76  E-value=0.022  Score=51.83  Aligned_cols=23  Identities=30%  Similarity=0.338  Sum_probs=20.7

Q ss_pred             EEeEeccCCCCcchhHHhhhcCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      .++++|.+|+|||||++.|.+-.
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            48999999999999999999754

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=93.73  E-value=0.024  Score=48.28  Aligned_cols=21  Identities=14%  Similarity=0.374  Sum_probs=19.3

Q ss_pred             EEeEeccCCCCcchhHHhhhc
Q 021210          219 RAGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~  239 (316)
                      .++++|.+|+||||+.+.|.+
T Consensus        31 ~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           31 HVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999975

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=93.70  E-value=0.028  Score=46.21  Aligned_cols=22  Identities=23%  Similarity=0.356  Sum_probs=19.9

Q ss_pred             eEEeEeccCCCCcchhHHhhhc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~  239 (316)
                      ..|+++|.||+||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            3589999999999999999986

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=93.67  E-value=0.023  Score=50.34  Aligned_cols=23  Identities=13%  Similarity=0.254  Sum_probs=20.7

Q ss_pred             EEeEeccCCCCcchhHHhhhcCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      .++++|.+|+|||||++.|.+-.
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48999999999999999999753

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=93.67  E-value=0.025  Score=50.84  Aligned_cols=23  Identities=26%  Similarity=0.388  Sum_probs=20.8

Q ss_pred             EEeEeccCCCCcchhHHhhhcCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      .++++|.+|+|||||++.|.+-.
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            48999999999999999999753

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=93.65  E-value=0.023  Score=51.24  Aligned_cols=23  Identities=22%  Similarity=0.260  Sum_probs=20.7

Q ss_pred             EEeEeccCCCCcchhHHhhhcCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      .++++|.+|+|||||++.|.+-.
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Confidence            48999999999999999999753

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=93.65  E-value=0.023  Score=50.63  Aligned_cols=22  Identities=27%  Similarity=0.274  Sum_probs=20.3

Q ss_pred             EEeEeccCCCCcchhHHhhhcC
Q 021210          219 RAGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      .++++|.+|+|||||++.|.+-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999985

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=93.62  E-value=0.027  Score=49.58  Aligned_cols=21  Identities=38%  Similarity=0.656  Sum_probs=19.7

Q ss_pred             eEEeEeccCCCCcchhHHhhh
Q 021210          218 VRAGIVGYPNVGKSSLINRLL  238 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~  238 (316)
                      ..++++|.+|+|||||++.|.
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            469999999999999999998

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=93.57  E-value=0.027  Score=50.40  Aligned_cols=23  Identities=30%  Similarity=0.401  Sum_probs=20.9

Q ss_pred             EEeEeccCCCCcchhHHhhhcCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      .++++|.+|+|||||++.|.+-.
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            48999999999999999999764

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=93.57  E-value=0.027  Score=51.00  Aligned_cols=23  Identities=26%  Similarity=0.270  Sum_probs=20.8

Q ss_pred             EEeEeccCCCCcchhHHhhhcCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      .++++|.+|+|||||++.|.+-.
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            48999999999999999999753

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=93.56  E-value=0.022  Score=48.80  Aligned_cols=22  Identities=32%  Similarity=0.513  Sum_probs=19.8

Q ss_pred             EEeEeccCCCCcchhHHhhhcC
Q 021210          219 RAGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      .++++|.+|+|||||++.|.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            3799999999999999999864

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=93.54  E-value=0.025  Score=50.80  Aligned_cols=23  Identities=17%  Similarity=0.281  Sum_probs=20.8

Q ss_pred             EEeEeccCCCCcchhHHhhhcCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      .++++|..|+|||||++.|.+-.
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            48999999999999999999754

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=93.52  E-value=0.025  Score=51.02  Aligned_cols=22  Identities=36%  Similarity=0.409  Sum_probs=20.4

Q ss_pred             EEeEeccCCCCcchhHHhhhcC
Q 021210          219 RAGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      .++++|.+|+|||||++.|.+-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999985

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=93.50  E-value=0.024  Score=51.04  Aligned_cols=22  Identities=23%  Similarity=0.285  Sum_probs=19.9

Q ss_pred             EEeEeccCCCCcchhHHhhhcC
Q 021210          219 RAGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      .++++|.+|+|||||+++|.+.
T Consensus        27 ~v~i~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           27 LILVTGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             EEEEECSTTCSHHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHHh
Confidence            4899999999999999999863

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=93.45  E-value=0.028  Score=51.09  Aligned_cols=23  Identities=26%  Similarity=0.330  Sum_probs=20.7

Q ss_pred             EEeEeccCCCCcchhHHhhhcCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      .++++|.+|+|||||++.|.+-.
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            48999999999999999999754

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=93.44  E-value=0.013  Score=49.46  Aligned_cols=22  Identities=36%  Similarity=0.593  Sum_probs=19.9

Q ss_pred             EEeEeccCCCCcchhHHhhhcC
Q 021210          219 RAGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      .++|+|.+|+|||||++.|.+.
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999864

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=93.37  E-value=0.028  Score=48.29  Aligned_cols=23  Identities=22%  Similarity=0.245  Sum_probs=20.4

Q ss_pred             eEEeEeccCCCCcchhHHhhhcC
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      ..|+++|.+|+||||+.+.|.+.
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~~   28 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAEA   28 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999999753

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=93.34  E-value=0.019  Score=53.03  Aligned_cols=23  Identities=26%  Similarity=0.444  Sum_probs=20.8

Q ss_pred             EEeEeccCCCCcchhHHhhhcCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      .++|+|.+|+|||||++.|.+--
T Consensus        82 ~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTSS
T ss_pred             EEEEECCCCchHHHHHHHHHcCC
Confidence            58999999999999999999743

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=93.33  E-value=0.028  Score=45.57  Aligned_cols=19  Identities=37%  Similarity=0.461  Sum_probs=17.9

Q ss_pred             EEeEeccCCCCcchhHHhh
Q 021210          219 RAGIVGYPNVGKSSLINRL  237 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L  237 (316)
                      .|+++|.||+||||+.+.|
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4899999999999999999

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=93.32  E-value=0.028  Score=50.32  Aligned_cols=23  Identities=30%  Similarity=0.459  Sum_probs=20.8

Q ss_pred             EEeEeccCCCCcchhHHhhhcCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      .++++|.+|+|||||++.|.+-.
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48999999999999999999754

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=93.32  E-value=0.031  Score=50.35  Aligned_cols=23  Identities=22%  Similarity=0.199  Sum_probs=20.7

Q ss_pred             EEeEeccCCCCcchhHHhhhcCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      .++++|.+|+|||||++.|.+-.
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            48999999999999999999753

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=93.30  E-value=0.034  Score=47.26  Aligned_cols=23  Identities=26%  Similarity=0.260  Sum_probs=20.4

Q ss_pred             eEEeEeccCCCCcchhHHhhhcC
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      ..|+++|.+|+||||+.+.|.+.
T Consensus        26 ~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           26 CVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            45899999999999999999754

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=93.29  E-value=0.037  Score=46.15  Aligned_cols=23  Identities=26%  Similarity=0.374  Sum_probs=20.3

Q ss_pred             ceEEeEeccCCCCcchhHHhhhc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~  239 (316)
                      +..|+++|.||+||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999999974

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=93.24  E-value=0.032  Score=45.48  Aligned_cols=22  Identities=23%  Similarity=0.078  Sum_probs=19.5

Q ss_pred             EEeEeccCCCCcchhHHhhhcC
Q 021210          219 RAGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      .|+++|.+|+||||+.+.|.+.
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999753

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=93.18  E-value=0.037  Score=45.68  Aligned_cols=22  Identities=18%  Similarity=0.250  Sum_probs=19.6

Q ss_pred             eEEeEeccCCCCcchhHHhhhc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~  239 (316)
                      -.++++|.+|+||||+.+.|.+
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            3589999999999999999864

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=93.13  E-value=0.032  Score=47.30  Aligned_cols=21  Identities=29%  Similarity=0.490  Sum_probs=19.4

Q ss_pred             EEeEeccCCCCcchhHHhhhc
Q 021210          219 RAGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~  239 (316)
                      .|+++|.+|+||||+.+.|.+
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            589999999999999999875

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=93.08  E-value=0.031  Score=46.44  Aligned_cols=23  Identities=22%  Similarity=0.254  Sum_probs=20.8

Q ss_pred             EEeEeccCCCCcchhHHhhhcCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      .++++|..|+|||||++.|.+.-
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            48999999999999999998754

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=93.03  E-value=0.049  Score=45.24  Aligned_cols=22  Identities=41%  Similarity=0.516  Sum_probs=19.7

Q ss_pred             EEeEeccCCCCcchhHHhhhcC
Q 021210          219 RAGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      .++++|.+|+|||||++++.+.
T Consensus        40 ~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           40 GLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             EEEECCSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999998754

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=92.96  E-value=0.075  Score=50.30  Aligned_cols=44  Identities=11%  Similarity=-0.005  Sum_probs=29.6

Q ss_pred             CCCEEEEEEccCCCC--hHhHHHHHHHHHhcCceEEEeccccccch
Q 021210          147 NRKRILVLNREDMIS--MADRNAWATYFAKQGTKVIFSNGQLGMGT  190 (316)
Q Consensus       147 ~k~~IlVlNK~DLv~--~~~~~~~~~~~~~~g~~vi~iSa~~g~gi  190 (316)
                      .||++++.||.|..-  ....+...++..+.+..++++||+....+
T Consensus       199 ~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~E~el  244 (363)
T 1jal_A          199 LKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAIESEI  244 (363)
T ss_dssp             TSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHHHHHG
T ss_pred             CCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHHHHHH
Confidence            489999999999641  22233444445555778999999865443

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=92.95  E-value=0.041  Score=45.39  Aligned_cols=22  Identities=23%  Similarity=0.222  Sum_probs=19.8

Q ss_pred             EEeEeccCCCCcchhHHhhhcC
Q 021210          219 RAGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      .|.++|.||+||||+.+.|...
T Consensus         5 ~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            5 MIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            4899999999999999999863

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=92.94  E-value=0.071  Score=50.69  Aligned_cols=81  Identities=12%  Similarity=0.135  Sum_probs=50.1

Q ss_pred             hhhccccCCcceEEEeccccc--cccccchHH------HHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH---HHHHH---
Q 021210           79 EECDWADLDADLYYWTKSLRP--VQWYPGHIA------KTEKELKDQLKLMDVVIEVRDARIPLSTTHP---LMDQW---  144 (316)
Q Consensus        79 e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~------~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~---~i~~~---  144 (316)
                      ..-.+.|+|...-...-.-..  +.++||...      ...+++...++++|++++|+|+.+|....+.   ++..+   
T Consensus       100 ~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~  179 (376)
T 4a9a_A          100 AEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLHHKQIIEKELEGVGIR  179 (376)
T ss_dssp             GGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHHHHHHHHHHHHHTTEE
T ss_pred             cCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHHHHHHHHHHHHHhhHh
Confidence            344566777655433322222  556777532      2345677889999999999999876533221   12111   


Q ss_pred             hCCCCEEEEEEccCC
Q 021210          145 LGNRKRILVLNREDM  159 (316)
Q Consensus       145 l~~k~~IlVlNK~DL  159 (316)
                      +..+|.++++||+|.
T Consensus       180 l~~k~~~i~~nK~d~  194 (376)
T 4a9a_A          180 LNKTPPDILIKKKEK  194 (376)
T ss_dssp             ETCCCCCEEEEECSS
T ss_pred             hccCChhhhhhHhhh
Confidence            236789999999996

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=92.93  E-value=0.036  Score=46.56  Aligned_cols=21  Identities=29%  Similarity=0.452  Sum_probs=19.4

Q ss_pred             EEeEeccCCCCcchhHHhhhc
Q 021210          219 RAGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~  239 (316)
                      .|+++|.+|+||||+.+.|.+
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            489999999999999999975

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=92.92  E-value=0.043  Score=46.62  Aligned_cols=22  Identities=23%  Similarity=0.350  Sum_probs=20.0

Q ss_pred             eEEeEeccCCCCcchhHHhhhc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~  239 (316)
                      ..|+++|.+|+||||+.+.|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999999976

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=92.92  E-value=0.038  Score=49.80  Aligned_cols=23  Identities=22%  Similarity=0.300  Sum_probs=20.8

Q ss_pred             EEeEeccCCCCcchhHHhhhcCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      .++++|.+|+|||||++.|.+-.
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48999999999999999999753

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=92.90  E-value=0.06  Score=52.08  Aligned_cols=62  Identities=11%  Similarity=0.127  Sum_probs=44.7

Q ss_pred             eEEEEEeCCCCCCCCcHHHHHHhC-CCCEEEEEEccCCCChHhHHHHHHHHH----hcCceEEEecc
Q 021210          123 VVIEVRDARIPLSTTHPLMDQWLG-NRKRILVLNREDMISMADRNAWATYFA----KQGTKVIFSNG  184 (316)
Q Consensus       123 lIl~VvDar~~~~~~~~~i~~~l~-~k~~IlVlNK~DLv~~~~~~~~~~~~~----~~g~~vi~iSa  184 (316)
                      ++++|+|++.++...+..+.+.+. +.++|+|+||+|.++..+...+.+.+.    ..|+.++++|.
T Consensus       151 ~v~fI~d~~~~l~~~Dieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~  217 (427)
T 2qag_B          151 CLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT  217 (427)
T ss_dssp             EEEEECCCC---CHHHHHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred             EEEEEeCCCCCCCHHHHHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence            477888998888877777877776 679999999999998887665554443    45677788875

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=92.89  E-value=0.04  Score=50.91  Aligned_cols=25  Identities=28%  Similarity=0.275  Sum_probs=21.6

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcC
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      .+..++|+|.+|+|||||++.|.+.
T Consensus        89 ~g~ivgI~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           89 VPFIIGVAGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCchHHHHHHHHHhh
Confidence            3456999999999999999999863

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=92.89  E-value=0.048  Score=46.37  Aligned_cols=24  Identities=38%  Similarity=0.540  Sum_probs=21.4

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcC
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      +..|+++|.+|+||||+.+.|.+.
T Consensus        21 ~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           21 TFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHh
Confidence            456999999999999999999875

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=92.88  E-value=0.078  Score=48.43  Aligned_cols=25  Identities=16%  Similarity=0.034  Sum_probs=21.7

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcC
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      .+..|+|+|.+|+|||||.+.|.+.
T Consensus        30 ~~~ii~I~G~sGsGKSTla~~L~~~   54 (290)
T 1odf_A           30 CPLFIFFSGPQGSGKSFTSIQIYNH   54 (290)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4567999999999999999998753

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=92.84  E-value=0.034  Score=47.62  Aligned_cols=21  Identities=24%  Similarity=0.270  Sum_probs=19.5

Q ss_pred             EEeEeccCCCCcchhHHhhhc
Q 021210          219 RAGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~  239 (316)
                      -++++|.+|+|||||++.|.+
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g   47 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAV   47 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999999986

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=92.82  E-value=0.033  Score=47.22  Aligned_cols=23  Identities=22%  Similarity=0.239  Sum_probs=20.1

Q ss_pred             eEEeEeccCCCCcchhHHhhhcC
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      ..|+++|.+|+||||+.+.|.+.
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999999753

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=92.82  E-value=0.036  Score=52.52  Aligned_cols=23  Identities=30%  Similarity=0.407  Sum_probs=20.7

Q ss_pred             EEeEeccCCCCcchhHHhhhcCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      .++++|.+|+|||||+++|.+-.
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHhcCC
Confidence            38999999999999999999754

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=92.75  E-value=0.045  Score=45.46  Aligned_cols=23  Identities=26%  Similarity=0.401  Sum_probs=20.2

Q ss_pred             ceEEeEeccCCCCcchhHHhhhc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~  239 (316)
                      +..|+++|.+|+||||+.+.|..
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            34699999999999999999974

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=92.70  E-value=0.042  Score=50.28  Aligned_cols=23  Identities=22%  Similarity=0.359  Sum_probs=20.8

Q ss_pred             EEeEeccCCCCcchhHHhhhcCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      .++++|..|+|||||++.|.+-.
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            48999999999999999999754

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=92.68  E-value=0.044  Score=45.44  Aligned_cols=22  Identities=18%  Similarity=0.297  Sum_probs=19.6

Q ss_pred             eEEeEeccCCCCcchhHHhhhc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~  239 (316)
                      ..|+|.|.||+||||+.+.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	316
d1puja_	273	c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subti	2e-49
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	1e-09
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	1e-08
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	4e-08
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	4e-08
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	4e-08
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	6e-08
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	7e-08
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	2e-07
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	5e-07
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	6e-07
d1wxqa1	319	c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyr	2e-06
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	3e-06
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	4e-06
d1svia_	195	c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti	7e-06
d1ni3a1	296	c.37.1.8 (A:11-306) YchF GTP-binding protein N-ter	8e-06
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	2e-05
d1jala1	278	c.37.1.8 (A:1-278) YchF GTP-binding protein N-term	2e-05
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	2e-04
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	4e-04
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	4e-04
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	4e-04
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	5e-04
d2akab1	299	c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus n	6e-04
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	7e-04
d2p67a1	327	c.37.1.10 (A:1-327) LAO/AO transport system kinase	8e-04
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	0.001
d1u0la2	225	c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C	0.001
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	0.001
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	0.001
d1xjca_	165	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	0.001
d1jwyb_	306	c.37.1.8 (B:) Dynamin G domain {Dictyostelium disc	0.002
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	0.002
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	0.002
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	0.002
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	0.003
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	0.003
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	0.004
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	0.004
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	0.004
d1np6a_	170	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	0.004
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	0.004

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} Length = 273

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

 Score =  164 bits (415), Expect = 2e-49
 Identities = 78/207 (37%), Positives = 128/207 (61%)

Query: 106 HIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADR 165
           H+AK  +E+ ++LKL+D+V E+ DARIP+S+ +P+++  L N+ RI++LN+ D    A  
Sbjct: 1   HMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADAAVT 60

Query: 166 NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGY 225
             W  +F  QG + +  N   G G  ++   +K +  +   + R+KG+ PRA+RA I+G 
Sbjct: 61  QQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGI 120

Query: 226 PNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIK 285
           PNVGKS+LINRL K+ +     RPG+T   +WV+ GK+LE LD+PGI+  +  D+   ++
Sbjct: 121 PNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFEDELVGLR 180

Query: 286 LAICDDIGERSYDVADVAAILVQMLAR 312
           LA+   I +   ++ DVA   ++ L  
Sbjct: 181 LAVTGAIKDSIINLQDVAVFGLRFLEE 207

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 54.9 bits (131), Expect = 1e-09
 Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV---LKWVRFGKDLEFLDSPGIIPMRI 277
           G+VG+P+VGKS+L++ +   +   A            +     G+     D PG+I    
Sbjct: 5   GLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAH 64

Query: 278 SDQAAAIK 285
                  +
Sbjct: 65  QGVGLGHQ 72

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 51.6 bits (122), Expect = 1e-08
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV---LKWVRFGKDLEFLDSPGIIPMRI 277
           G+VGYPN GKSSL+  + +     A            +  V   +     D PGII    
Sbjct: 5   GLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGAS 64

Query: 278 SDQAAAIK 285
             +   ++
Sbjct: 65  EGKGLGLE 72

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 50.1 bits (118), Expect = 4e-08
 Identities = 15/33 (45%), Positives = 23/33 (69%)

Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253
            IVG PNVGKS+L+N+LL +++   + +   TR
Sbjct: 9   AIVGRPNVGKSTLLNKLLGQKISITSRKAQTTR 41

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 50.1 bits (118), Expect = 4e-08
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW 257
              G  NVGKS+LI RL  +++     RPGVTR +  
Sbjct: 4   IFAGRSNVGKSTLIYRLTGKKVR-RGKRPGVTRKIIE 39

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 49.8 bits (117), Expect = 4e-08
 Identities = 17/37 (45%), Positives = 22/37 (59%)

Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW 257
            IVG PNVGKS+L N+L+K++        GVTR    
Sbjct: 4   LIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQ 40

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 49.2 bits (116), Expect = 6e-08
 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGII 273
           R  IVG PNVGKS+L+NRLL          PG TR +        G     +D+ G+ 
Sbjct: 2   RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVR 59

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 49.7 bits (117), Expect = 7e-08
 Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 5/103 (4%)

Query: 210 SKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG---VTRVLKWVRFGKDLEF 266
           SK  +  A++  IVG PNVGKS+L N +L +     +P PG        +    G+   F
Sbjct: 1   SKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVF 60

Query: 267 LDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQM 309
           +D+ G+      +     K    +     S + ADV  I++  
Sbjct: 61  VDTAGLRRKSRVEPRTVEK--YSNYRVVDSIEKADVVVIVLDA 101

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 48.2 bits (113), Expect = 2e-07
 Identities = 19/40 (47%), Positives = 24/40 (60%)

Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF 260
            IVG PNVGKS+L+N LL  ++ P +PRP  TR       
Sbjct: 9   AIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGIL 48

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 46.7 bits (109), Expect = 5e-07
 Identities = 15/43 (34%), Positives = 19/43 (44%)

Query: 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF 260
           ++  I G PN GKSSL+N L  R         G TR +     
Sbjct: 2   MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHI 44

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.2 bits (114), Expect = 6e-07
 Identities = 16/82 (19%), Positives = 23/82 (28%), Gaps = 6/82 (7%)

Query: 206 VKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRM----CPAAPRPGVTRVLKWVRF- 260
           +    K +    +   + G    GKSS IN L                 VT      +  
Sbjct: 45  ISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP 104

Query: 261 -GKDLEFLDSPGIIPMRISDQA 281
              ++ F D PGI         
Sbjct: 105 NIPNVVFWDLPGIGSTNFPPDT 126

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} Length = 319

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 46.5 bits (109), Expect = 2e-06
 Identities = 15/82 (18%), Positives = 24/82 (29%), Gaps = 26/82 (31%)

Query: 221 GIVGYPNVGKSSLINRLLKRR-------MCPAAPRPGVTRVLKWVRF------------- 260
           G+VG PNVGKS+  +                     GVT  +                  
Sbjct: 4   GVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYE 63

Query: 261 ------GKDLEFLDSPGIIPMR 276
                    ++ +D  G++P  
Sbjct: 64  YRNGLALIPVKMVDVAGLVPGA 85

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 45.2 bits (106), Expect = 3e-06
 Identities = 11/73 (15%), Positives = 26/73 (35%), Gaps = 2/73 (2%)

Query: 188 MGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAP 247
            G    +   +    ++    + +     ++   ++G   VGKSS +N ++  R+   +P
Sbjct: 5   SGINTFAPATQTKLLELLGNLKQED--VNSLTILVMGKGGVGKSSTVNSIIGERVVSISP 62

Query: 248 RPGVTRVLKWVRF 260
                     V  
Sbjct: 63  FQSEGPRPVMVSR 75

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.6 bits (104), Expect = 4e-06
 Identities = 16/81 (19%), Positives = 24/81 (29%), Gaps = 2/81 (2%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQA 281
           I G  N GK+SL+  L    + P            +   G  +  +D PG + +R     
Sbjct: 8   IAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--DGSGVTLVDFPGHVKLRYKLSD 65

Query: 282 AAIKLAICDDIGERSYDVADV 302
                A          D    
Sbjct: 66  YLKTRAKFVKGLIFMVDSTVD 86

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

 Score = 44.0 bits (102), Expect = 7e-06
 Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 5/83 (6%)

Query: 191 MKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLK-RRMCPAAPRP 249
           MK+++ ++ + S V  ++  +G LP      + G  NVGKSS IN L+  + +   + +P
Sbjct: 1   MKVTK-SEIVISAVKPEQYPEGGLPEI---ALAGRSNVGKSSFINSLINRKNLARTSSKP 56

Query: 250 GVTRVLKWVRFGKDLEFLDSPGI 272
           G T+ L +     +L F+D PG 
Sbjct: 57  GKTQTLNFYIINDELHFVDVPGY 79

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 296

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 44.4 bits (104), Expect = 8e-06
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT 252
           + GIVG PNVGKS+    + K  +   A  P  T
Sbjct: 12  KTGIVGMPNVGKSTFFRAITKSVLGNPANYPYAT 45

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 42.8 bits (99), Expect = 2e-05
 Identities = 8/29 (27%), Positives = 12/29 (41%)

Query: 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMC 243
              +     G  N GKSS +N L  ++  
Sbjct: 14  DTGIEVAFAGRSNAGKSSALNTLTNQKSL 42

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} Length = 278

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

 Score = 43.0 bits (101), Expect = 2e-05
 Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT 252
             + GIVG PNVGKS+L N L K  +  AA  P  T
Sbjct: 2   GFKCGIVGLPNVGKSTLFNALTKAGI-EAANYPFCT 36

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.1 bits (90), Expect = 2e-04
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFGKD---LEFLDSPG 271
           I+G  +VGK+S + R       PA     G+   +K +        L+  D+ G
Sbjct: 10  IIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAG 63

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 4e-04
 Identities = 10/46 (21%), Positives = 19/46 (41%)

Query: 214 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR 259
           + R +R  I+G    GK++++ RL    +    P  G        +
Sbjct: 2   MTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYK 47

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.2 bits (88), Expect = 4e-04
 Identities = 12/82 (14%), Positives = 29/82 (35%), Gaps = 7/82 (8%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFGK---DLEFLDSPG---IIP 274
           ++G   VGK+ ++ R  +           G+   ++ +        L+  D+ G      
Sbjct: 11  LIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT 70

Query: 275 MRISDQAAAIKLAICDDIGERS 296
           +  +    A+ + +  DI    
Sbjct: 71  ITTAYYRGAMGIMLVYDITNEK 92

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.8 bits (87), Expect = 4e-04
 Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 13/81 (16%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFGKD---LEFLDSPG------ 271
           ++G   VGKS L+ R ++ +  P+     G+   +K V        L+  D+ G      
Sbjct: 7   LIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRT 66

Query: 272 IIPMRISDQAAAIKLAICDDI 292
           I           I   +  DI
Sbjct: 67  ITTAYYRGAMGII---LVYDI 84

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.5 bits (88), Expect = 5e-04
 Identities = 18/96 (18%), Positives = 28/96 (29%), Gaps = 6/96 (6%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQA 281
            VG  + GK+ L  RLL  +          +  +  V   +              +  Q 
Sbjct: 5   FVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQL 64

Query: 282 AAIKLAICD------DIGERSYDVADVAAILVQMLA 311
                +         D      +V DVA  L Q+L 
Sbjct: 65  LDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLI 100

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.3 bits (88), Expect = 6e-04
 Identities = 17/103 (16%), Positives = 35/103 (33%), Gaps = 4/103 (3%)

Query: 214 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGII 273
           LP+     +VG  + GKSS++   + R   P      VTR    ++              
Sbjct: 26  LPQIA---VVGGQSAGKSSVLENFVGRDFLPRGSGI-VTRRPLVLQLVNSTTEYAEFLHC 81

Query: 274 PMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTV 316
             +       ++L I  +    +     ++ + + +    P V
Sbjct: 82  KGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHV 124

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 7e-04
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFGKD---LEFLDSPG 271
           ++G   VGK+ L+ R  +    P      GV  ++K V    +   L+  D+ G
Sbjct: 10  LIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAG 63

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} Length = 327

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

 Score = 38.3 bits (88), Expect = 8e-04
 Identities = 12/66 (18%), Positives = 20/66 (30%), Gaps = 6/66 (9%)

Query: 194 SRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR------RMCPAAP 247
           SR  +  A    +           +R G+ G P  GKS+ +            ++   A 
Sbjct: 31  SRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAV 90

Query: 248 RPGVTR 253
            P    
Sbjct: 91  DPSSPV 96

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 37.2 bits (85), Expect = 0.001
 Identities = 12/54 (22%), Positives = 24/54 (44%)

Query: 204 VNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW 257
           +++ R+ K    + VR  ++G  N GK++L+ +L    +    P  G       
Sbjct: 3   LSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQ 56

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 225

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.4 bits (86), Expect = 0.001
 Identities = 33/187 (17%), Positives = 67/187 (35%), Gaps = 33/187 (17%)

Query: 122 DVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFAKQG 176
           D VI V   ++P  T+  ++D++L        + ++V+N+ D+    D            
Sbjct: 12  DQVILVVTVKMP-ETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYS 70

Query: 177 --TKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLI 234
               ++ ++ + GMG  +L      L   ++                + G   VGKSSL+
Sbjct: 71  GLYPIVKTSAKTGMGIEELKEY---LKGKIST---------------MAGLSGVGKSSLL 112

Query: 235 NRLLKRRMCPAAPR-------PGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLA 287
           N +        +            T   + ++F      +D+PG   + I+D        
Sbjct: 113 NAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEELKH 172

Query: 288 ICDDIGE 294
              + G+
Sbjct: 173 YFKEFGD 179

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 1/55 (1%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMR 276
           IVG  N GK++++ +     +   +P  G                 D  G   +R
Sbjct: 20  IVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIV-INNTRFLMWDIGGQESLR 73

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.6 bits (83), Expect = 0.001
 Identities = 9/38 (23%), Positives = 16/38 (42%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR 259
            +G  N GK++L++ L   R+    P    T     + 
Sbjct: 5   FLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIG 42

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 36.4 bits (83), Expect = 0.001
 Identities = 6/20 (30%), Positives = 13/20 (65%)

Query: 221 GIVGYPNVGKSSLINRLLKR 240
            +VGY + GK++L+ + +  
Sbjct: 5   QVVGYKHSGKTTLMEKWVAA 24

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} Length = 306

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 37.1 bits (85), Expect = 0.002
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 214 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDS 269
           LP+ V   +VG  + GKSS++  ++ R   P      VTR    ++        D 
Sbjct: 24  LPQIV---VVGSQSSGKSSVLENIVGRDFLPRGSGI-VTRRPLILQLTHLPIADDG 75

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 215 PRAVRAGIVGYPNVGKSSLINRLLKRR 241
           P+A++  +VG   VGK+ L+       
Sbjct: 3   PQAIKCVVVGDGAVGKTCLLISYTTNA 29

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 0.002
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFGKD---LEFLDSPG 271
           I+G   VGKSSL+ R       P  A   GV   +K +    +   L   D+ G
Sbjct: 12  IIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAG 65

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 1/55 (1%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMR 276
           +VG    GK++++ +L    +    P  G        +        D  G   +R
Sbjct: 5   MVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK-NISFTVWDVGGQDKIR 58

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 35.4 bits (80), Expect = 0.003
 Identities = 5/21 (23%), Positives = 11/21 (52%)

Query: 222 IVGYPNVGKSSLINRLLKRRM 242
           +VG    GK++ +N +   + 
Sbjct: 7   LVGLQYSGKTTFVNVIASGQF 27

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 35.4 bits (80), Expect = 0.003
 Identities = 4/20 (20%), Positives = 11/20 (55%)

Query: 222 IVGYPNVGKSSLINRLLKRR 241
           ++G  N GK++++ +     
Sbjct: 7   MLGLDNAGKTTILKKFNGED 26

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 8/20 (40%), Positives = 15/20 (75%)

Query: 222 IVGYPNVGKSSLINRLLKRR 241
           I+G   VGK+SL+N+ + ++
Sbjct: 7   ILGDSGVGKTSLMNQYVNKK 26

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 0.004
 Identities = 8/54 (14%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 222 IVGYPNVGKSSLINRLLKRR----MCPAAPRPGVTRVLKWVRFGKDLEFLDSPG 271
           ++G    GKS L+++ ++++              ++++        L+  D+ G
Sbjct: 10  VIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAG 63

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 11/42 (26%), Positives = 19/42 (45%)

Query: 212 GLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253
           GL  +  +   +G  N GK++L++ L   R+    P    T 
Sbjct: 8   GLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTS 49

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

 Score = 35.3 bits (80), Expect = 0.004
 Identities = 4/20 (20%), Positives = 10/20 (50%)

Query: 221 GIVGYPNVGKSSLINRLLKR 240
               +   GK++L+ +L+  
Sbjct: 6   AFAAWSGTGKTTLLKKLIPA 25

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.1 bits (79), Expect = 0.004
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 217 AVRAGIVGYPNVGKSSLINRLLKRR 241
           A++  +VG   VGKSS+I R  K  
Sbjct: 2   AIKMVVVGNGAVGKSSMIQRYCKGI 26

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	316
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	100.0
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	99.88
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	99.85
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.35
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.33
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.31
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.31
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.27
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.25
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.23
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.16
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.16
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.15
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.12
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.1
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.09
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.08
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.08
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.07
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.07
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.02
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.01
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.0
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	98.99
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	98.97
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	98.95
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	98.91
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	98.9
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	98.87
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	98.85
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	98.83
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	98.79
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	98.77
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	98.75
d1nrjb_	209	Signal recognition particle receptor beta-subunit	98.66
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	98.65
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	98.58
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	98.57
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	98.54
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	98.52
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	98.51
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	98.45
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	98.45
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	98.44
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.42
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	98.41
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	98.37
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	98.36
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	98.36
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.35
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	98.35
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	98.33
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	98.31
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.29
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	98.29
d2fh5b1	207	Signal recognition particle receptor beta-subunit	98.29
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	98.28
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	98.27
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	98.27
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	98.27
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	98.26
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	98.26
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	98.26
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	98.25
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	98.24
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	98.24
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.23
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	98.23
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	98.22
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.22
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	98.21
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	98.21
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	98.21
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	98.21
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	98.2
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	98.19
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	98.19
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.18
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	98.18
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	98.17
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	98.17
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	98.15
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	98.15
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	98.14
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	98.14
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	98.13
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	98.13
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	98.12
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	98.12
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	98.11
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.11
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	98.11
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	98.11
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	98.08
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	98.07
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	98.05
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	98.05
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	98.04
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	98.01
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	98.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	98.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	97.99
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	97.98
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	97.98
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	97.97
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	97.96
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	97.95
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.93
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	97.93
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	97.93
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	97.92
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	97.92
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	97.91
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	97.9
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	97.89
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	97.89
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.88
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	97.88
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	97.87
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	97.87
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	97.87
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	97.84
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	97.84
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	97.83
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	97.83
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	97.83
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	97.82
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	97.82
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	97.81
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	97.8
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	97.8
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	97.79
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	97.78
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	97.78
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	97.78
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	97.77
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	97.77
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	97.76
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	97.76
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	97.76
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	97.75
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	97.74
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	97.74
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	97.72
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	97.71
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	97.71
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.67
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	97.66
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	97.64
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	97.61
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	97.59
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	97.56
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	97.49
d2fh5b1	207	Signal recognition particle receptor beta-subunit	97.42
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	97.39
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	97.35
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.28
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.22
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	97.15
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	97.15
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	97.13
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	97.09
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	97.08
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	96.98
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	96.93
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.87
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.85
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	96.83
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	96.44
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	96.42
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	96.4
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	96.23
d1nrjb_	209	Signal recognition particle receptor beta-subunit	96.22
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.14
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.1
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.1
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.06
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.03
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.01
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	95.92
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	95.81
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	95.8
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	95.74
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	95.72
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	95.64
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.29
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	95.18
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	95.09
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	95.05
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	95.04
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	94.95
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	94.81
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	94.71
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	94.7
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	94.69
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	94.65
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	94.64
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	94.54
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	94.53
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	94.39
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	94.28
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	94.26
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	94.24
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	94.24
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	94.12
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	94.09
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	94.06
d2awna2	232	Maltose transport protein MalK, N-terminal domain	93.93
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	93.77
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	93.74
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	93.72
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	93.68
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	93.66
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	93.65
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	93.63
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	93.6
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	93.6
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	93.52
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	93.47
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	93.46
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	93.44
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	93.42
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	93.3
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	93.28
d1g2912	240	Maltose transport protein MalK, N-terminal domain	93.23
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	93.22
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	93.11
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	93.06
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	93.05
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	93.02
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	93.01
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	92.96
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	92.92
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	92.9
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	92.83
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	92.79
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	92.75
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	92.6
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	92.47
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	92.31
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	92.09
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	92.01
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	91.87
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	91.7
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	90.79
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	90.78
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	90.71
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	90.55
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	90.39
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	90.05
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	90.02
d1tuea_	205	Replication protein E1 helicase domain {Human papi	89.79
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	89.55
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	89.3
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	89.14
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	89.12
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	88.88
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	88.68
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	88.67
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	88.59
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	88.19
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	88.02
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	86.93
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	86.55
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	86.44
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	85.78
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	85.55
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	85.35
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	85.08
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	84.94
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	84.76
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	84.18
d1vmaa2	213	GTPase domain of the signal recognition particle r	84.16
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	84.0
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	83.88
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	83.47
d2qy9a2	211	GTPase domain of the signal recognition particle r	83.47
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	83.09
d1j8yf2	211	GTPase domain of the signal sequence recognition p	83.06
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	83.04
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	82.84
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	82.31
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	82.25
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	82.22
d1okkd2	207	GTPase domain of the signal recognition particle r	82.01
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	81.98
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	81.66
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	81.6
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	81.45
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	81.4
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	81.35
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	81.2
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	81.13
d1ls1a2	207	GTPase domain of the signal sequence recognition p	81.01
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	80.97
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	80.38

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=1.5e-42  Score=318.40  Aligned_cols=208  Identities=38%  Similarity=0.665  Sum_probs=180.3

Q ss_pred             hHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCEEEEEEccCCCChHhHHHHHHHHHhcCceEEEeccc
Q 021210          106 HIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQ  185 (316)
Q Consensus       106 h~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~~vi~iSa~  185 (316)
                      ||.++.+++++.++.+|+||+|+|||+|.+++++.+.+++.+||+|+|+||+||++.+..++|.++|.+.+..++++|+.
T Consensus         1 Hm~ka~r~i~~~i~~~DvIl~V~DaR~P~ss~~~~l~~~~~~Kp~IlVlNK~DLv~~~~~~~w~~~f~~~~~~~i~isa~   80 (273)
T d1puja_           1 HMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSV   80 (273)
T ss_dssp             CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHCSSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTT
T ss_pred             CHHHHHHHHHHHHHhCCEEEEEEECCCCCCCCCHHHHHHHcCCCeEEEEECccCCchHHHHHHHHHHHhcCCccceeecc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999888889999999


Q ss_pred             cccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEeCCcEE
Q 021210          186 LGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLE  265 (316)
Q Consensus       186 ~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~~~~~~  265 (316)
                      ++.|...+...+..+..........++....+++|++||+||||||||||+|.+++.+.|++.||+||+.++++.+.+++
T Consensus        81 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~i~~~~~~~  160 (273)
T d1puja_          81 NGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKELE  160 (273)
T ss_dssp             TCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEETTTEE
T ss_pred             cCCCccccchhhhhhhhhhhhhhhhccCCCCceEEEEEecCccchhhhhhhhhccceEEECCcccccccceEEECCCCeE
Confidence            99999988887766655444444455556678999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCcccCCCCCHHHHHHHHhcccccccCcchHHHHHHHHHHHHcC
Q 021210          266 FLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARI  313 (316)
Q Consensus       266 liDTPGi~~~~~~~~~~~~~La~~~~i~~~~~~~~~v~~~ll~~L~~~  313 (316)
                      |+||||++.+...+.+.+.+|+++++|.+..++..+++.++++.|.++
T Consensus       161 l~DTPGi~~p~~~~~~~~~~la~~~~i~~~~~~~~~~~~~ll~~l~~~  208 (273)
T d1puja_         161 LLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFLEEH  208 (273)
T ss_dssp             EEECCCCCCSCCCCHHHHHHHHHHTSSCTTSSCHHHHHHHHHHHHHHH
T ss_pred             EecCCCccccCCccHHHHhhhhhcCCcchhhcchhhHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999988664

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.88  E-value=4.3e-23  Score=182.67  Aligned_cols=144  Identities=22%  Similarity=0.326  Sum_probs=110.3

Q ss_pred             HHhhcCeEEEEEeCCCCCCCCcHHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHHH--hcCceEEEeccccccc
Q 021210          117 QLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFA--KQGTKVIFSNGQLGMG  189 (316)
Q Consensus       117 ~i~~aDlIl~VvDar~~~~~~~~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~~--~~g~~vi~iSa~~g~g  189 (316)
                      .+++.|.+++|+.+..|... ...+.+++     .+.+.++|+||+||++.++.+.+.+.+.  ..+++++.+|++++.|
T Consensus         7 ~vANiD~vliV~s~~~P~~~-~~~ldR~Lv~a~~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~~~~~~v~~vSa~~~~g   85 (225)
T d1u0la2           7 HVANVDQVILVVTVKMPETS-TYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMG   85 (225)
T ss_dssp             TEESCCEEEEEECSSTTCCC-HHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTT
T ss_pred             CcccCCEEEEEEeCCCCCCC-HHHHHHHHHHHHHcCCCEEEEEeCcccCCHHHHHHHHHhhcccccceeEEEeccccchh
Confidence            36889999999988876533 33455554     3789999999999998877666655443  3458899999999999


Q ss_pred             hhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCC-------CCCceeeEEEEEeCC
Q 021210          190 TMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAP-------RPGVTRVLKWVRFGK  262 (316)
Q Consensus       190 i~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~-------~pgtT~~~~~~~~~~  262 (316)
                      +++|++.++   .+               ..+|+|.+|||||||||+|.+.....++.       ..|||+..+++.+..
T Consensus        86 ~~~L~~~l~---~k---------------t~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~  147 (225)
T d1u0la2          86 IEELKEYLK---GK---------------ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDF  147 (225)
T ss_dssp             HHHHHHHHS---SS---------------EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTT
T ss_pred             HhhHHHHhc---CC---------------eEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECC
Confidence            998877642   11               36899999999999999999876555543       357999999999988


Q ss_pred             cEEEEeCCCcccCCCCC
Q 021210          263 DLEFLDSPGIIPMRISD  279 (316)
Q Consensus       263 ~~~liDTPGi~~~~~~~  279 (316)
                      +.+|+|||||+...+.+
T Consensus       148 gg~iiDTPG~r~~~l~~  164 (225)
T d1u0la2         148 GGYVVDTPGFANLEIND  164 (225)
T ss_dssp             SCEEESSCSSTTCCCCS
T ss_pred             CcEEEeCCccccccccc
Confidence            88999999998776644

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.85  E-value=2.1e-22  Score=178.81  Aligned_cols=142  Identities=20%  Similarity=0.257  Sum_probs=102.9

Q ss_pred             HHhhcCeEEEEEeCCCCCCCCcHHHHHHh-----CCCCEEEEEEccCCCChHh----HHHHHHHHHhcCceEEEeccccc
Q 021210          117 QLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMAD----RNAWATYFAKQGTKVIFSNGQLG  187 (316)
Q Consensus       117 ~i~~aDlIl~VvDar~~~~~~~~~i~~~l-----~~k~~IlVlNK~DLv~~~~----~~~~~~~~~~~g~~vi~iSa~~g  187 (316)
                      .+++.|.+++|+.+..|. .....+.+++     .+.+.++|+||+||++..+    ...+.+.|...|++++.+|++++
T Consensus         7 ~vANiD~~~iV~s~~~P~-~~~~~idR~Lv~a~~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~Sa~~~   85 (231)
T d1t9ha2           7 PICNVDQAVLVFSAVQPS-FSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQ   85 (231)
T ss_dssp             TEECCCEEEEEEESTTTT-CCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHH
T ss_pred             CccccCEEEEEEECCCCC-CCHHHHHHHHHHHHHcCCCEEEEEecccccccHHHHHHHHHHHHHHhhccccceeeecCCh
Confidence            358899999999998774 3334566654     3778999999999997654    33455667788999999999999


Q ss_pred             cchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCC-------CCceeeEEEEEe
Q 021210          188 MGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPR-------PGVTRVLKWVRF  260 (316)
Q Consensus       188 ~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~-------pgtT~~~~~~~~  260 (316)
                      .|+++|++.++   .+               ..+|+|.+|||||||||+|.+.....++.+       -+||+...++..
T Consensus        86 ~gl~~L~~~l~---~~---------------~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~~  147 (231)
T d1t9ha2          86 DSLADIIPHFQ---DK---------------TTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHT  147 (231)
T ss_dssp             TTCTTTGGGGT---TS---------------EEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEE
T ss_pred             hHHHHHHHhhc---cc---------------eEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEec
Confidence            99988876532   11               368999999999999999998765555443       258888888777


Q ss_pred             CCcEEEEeCCCcccCCCC
Q 021210          261 GKDLEFLDSPGIIPMRIS  278 (316)
Q Consensus       261 ~~~~~liDTPGi~~~~~~  278 (316)
                      + +..|||||||+...+.
T Consensus       148 ~-gg~iiDTPG~r~~~l~  164 (231)
T d1t9ha2         148 S-GGLVADTPGFSSLEFT  164 (231)
T ss_dssp             T-TEEEESSCSCSSCCCT
T ss_pred             C-CCEEEECCcccccccc
Confidence            5 5689999999877664

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.35  E-value=5.9e-13  Score=119.12  Aligned_cols=66  Identities=24%  Similarity=0.347  Sum_probs=55.0

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe---CCcEEEEeCCCcccCCCCCHH
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMRISDQA  281 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~~~~~~~~~  281 (316)
                      .+++|+++|.||||||||+|+|++++.+.++..+++|++.+.+..   +..+.++||||+......+.+
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~   99 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDM   99 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHH
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcchHHH
Confidence            368999999999999999999999999999999999998654432   557999999999876554433

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.33  E-value=8e-13  Score=116.01  Aligned_cols=129  Identities=16%  Similarity=0.245  Sum_probs=94.2

Q ss_pred             CCCCCCCCCCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC---
Q 021210           63 HGGNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT---  137 (316)
Q Consensus        63 ~~~~~~~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~---  137 (316)
                      .++.++.+...|+...|++.+.+++....+|....+.  +.+.||| ..+..++...+..+|.+++|+||..+....   
T Consensus        54 ~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~iiD~PGH-~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e  132 (222)
T d1zunb3          54 TGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAKRKFIIADTPGH-EQYTRNMATGASTCDLAIILVDARYGVQTQTRR  132 (222)
T ss_dssp             -CCC--CHHHHHHHHC-----CCCCCEEEEEECSSEEEEEEECCCS-GGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHH
T ss_pred             cccceeeeeccccchhhhccCCCceeeEEEEeccceEEEEEeccch-hhhhhhhccccccCceEEEEeccccCcccchHH
Confidence            3466788888899999999999999999988887776  8899999 889999999999999999999999887443   


Q ss_pred             cHHHHHHhCCCCEEEEEEccCCCChHh------HHHHHHHHHhcC-----ceEEEeccccccchhh
Q 021210          138 HPLMDQWLGNRKRILVLNREDMISMAD------RNAWATYFAKQG-----TKVIFSNGQLGMGTMK  192 (316)
Q Consensus       138 ~~~i~~~l~~k~~IlVlNK~DLv~~~~------~~~~~~~~~~~g-----~~vi~iSa~~g~gi~~  192 (316)
                      +..+...++.+.+|+++||+|+++..+      .++...++.+.+     +.++|+||.+|.|+.+
T Consensus       133 ~~~~~~~~gv~~iiv~vNK~D~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~  198 (222)
T d1zunb3         133 HSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN  198 (222)
T ss_dssp             HHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             HHHHHHHcCCCEEEEEEEccccccccceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCCc
Confidence            333444455678999999999987432      223334444444     3568999999999744

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.31  E-value=3.4e-12  Score=107.50  Aligned_cols=127  Identities=17%  Similarity=0.141  Sum_probs=83.5

Q ss_pred             hhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCEE
Q 021210           76 AYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRI  151 (316)
Q Consensus        76 ~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~I  151 (316)
                      ...+++.+.+.+.....+......  +.+.||| .++.+.+...+..+|++++|+|++.+......++...+  .+.|++
T Consensus        37 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~-~~~~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~~~~~~~~~p~i  115 (179)
T d1wb1a4          37 LPESQKRGITIDIGFSAFKLENYRITLVDAPGH-ADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPII  115 (179)
T ss_dssp             -------------CCCEEEETTEEEEECCCSSH-HHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBC
T ss_pred             ccceeeeeeeccccccccccCCccccccccccc-cccccchhhhhhhccccccccccccccchhhhhhhhhhhhcCCcce
Confidence            344666666666666655544333  6778898 77889999999999999999999988765444444443  378999


Q ss_pred             EEEEccCCCChHhHHHHHHHHH---hc-----CceEEEeccccccchhhhHHHHHHhhhh
Q 021210          152 LVLNREDMISMADRNAWATYFA---KQ-----GTKVIFSNGQLGMGTMKLSRLAKALASD  203 (316)
Q Consensus       152 lVlNK~DLv~~~~~~~~~~~~~---~~-----g~~vi~iSa~~g~gi~~L~~~L~~l~~~  203 (316)
                      +|+||+|+++.++.+...+.++   +.     ..+++++||++|.|+++|.+.+.+..++
T Consensus       116 iv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         116 VVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNN  175 (179)
T ss_dssp             EEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             eccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEccCCcCHHHHHHHHHhcCCc
Confidence            9999999998765433222221   11     2478999999999999999988765543

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.31  E-value=1.1e-12  Score=109.81  Aligned_cols=55  Identities=38%  Similarity=0.571  Sum_probs=47.1

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEeCCcEEEEeCCCcccC
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPM  275 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~~~~~~liDTPGi~~~  275 (316)
                      .|+++|.||||||||+|+|++++. .+++.||||++...+.. .++.++||||+...
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~-~~~~~~g~T~~~~~~~~-~~~~ivDtpG~~~~   56 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKV-RRGKRPGVTRKIIEIEW-KNHKIIDMPGFGFM   56 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCC-SSSSSTTCTTSCEEEEE-TTEEEEECCCBSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc-eeeCCCCEeeccccccc-ccceecccCCceec
Confidence            589999999999999999998874 78999999999776554 46889999998543

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.27  E-value=2.2e-12  Score=111.00  Aligned_cols=114  Identities=18%  Similarity=0.186  Sum_probs=85.7

Q ss_pred             CcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH---HHHHHhCC
Q 021210           73 SIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP---LMDQWLGN  147 (316)
Q Consensus        73 ~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~---~i~~~l~~  147 (316)
                      .|....|++.++|+|.....|....+.  +.+.||| ..+.+++...+..+|++|+|+||..+......   .+...++.
T Consensus        41 ~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh-~~f~~~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~~~  119 (196)
T d1d2ea3          41 IDNAPEERARGITINAAHVEYSTAARHYAHTDCPGH-ADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGV  119 (196)
T ss_dssp             HHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSH-HHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTC
T ss_pred             cccchhhcCCCccCCcceEEEEeceeeEEeecCcch-HHHHHHHHHHHhhcCeEEEEEEcCCCCchhHHHHHHHHHHhcC
Confidence            344456888899999999988877665  7789999 78999999999999999999999998754333   33344557


Q ss_pred             CCEEEEEEccCCCChHhH-H----HHHHHHHhcC-----ceEEEeccccc
Q 021210          148 RKRILVLNREDMISMADR-N----AWATYFAKQG-----TKVIFSNGQLG  187 (316)
Q Consensus       148 k~~IlVlNK~DLv~~~~~-~----~~~~~~~~~g-----~~vi~iSa~~g  187 (316)
                      +++|+++||+|+++.++. +    +..+++...+     .+++++|++.|
T Consensus       120 ~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~pii~iSa~~g  169 (196)
T d1d2ea3         120 EHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCA  169 (196)
T ss_dssp             CCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHH
T ss_pred             CcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCcccCEEEEEEcccc
Confidence            789999999999865432 1    2333344344     45899999987

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.25  E-value=9.9e-13  Score=116.65  Aligned_cols=128  Identities=18%  Similarity=0.184  Sum_probs=100.4

Q ss_pred             CCCCCCCCCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCC--------
Q 021210           64 GGNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIP--------  133 (316)
Q Consensus        64 ~~~~~~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~--------  133 (316)
                      .+..+.+.+.|....|++.++|++..+..|....++  +.++||| ..+.++|...+..+|.+|+|+||..+        
T Consensus        50 ~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~iiDtPGH-~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~  128 (239)
T d1f60a3          50 KGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQVTVIDAPGH-RDFIKNMITGTSQADCAILIIAGGVGEFEAGISK  128 (239)
T ss_dssp             SSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEEEEEEECCCC-TTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCT
T ss_pred             CCccceeeecccchhhhcceeccccceeEeccCCEEEEEEECCCc-HHHHHHHHHHHHHhCEEEEEEECCCCccccccCc
Confidence            355677788999999999999999999999988776  7799999 88999999999999999999999764        


Q ss_pred             --CCCCcHHHHHHhCCCCEEEEEEccCCCChHh------HHHHHHHHHhcC-----ceEEEeccccccchhh
Q 021210          134 --LSTTHPLMDQWLGNRKRILVLNREDMISMAD------RNAWATYFAKQG-----TKVIFSNGQLGMGTMK  192 (316)
Q Consensus       134 --~~~~~~~i~~~l~~k~~IlVlNK~DLv~~~~------~~~~~~~~~~~g-----~~vi~iSa~~g~gi~~  192 (316)
                        .+..+..+.+.++-+++|+++||+|+++.++      .++..+++...+     +.++++|+..|.|+.+
T Consensus       129 ~~QT~eh~~~~~~~gv~~iiv~iNKmD~~~~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         129 DGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             TSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             hHhHHHHHHHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence              2444555566666777899999999986432      122333343334     4578999999998654

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.23  E-value=8.8e-12  Score=107.27  Aligned_cols=101  Identities=19%  Similarity=0.164  Sum_probs=76.5

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC----CcHHHHHHhCCCCEEEEEEccCCCChHhHHHH----HHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST----THPLMDQWLGNRKRILVLNREDMISMADRNAW----ATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~----~~~~i~~~l~~k~~IlVlNK~DLv~~~~~~~~----~~~  171 (316)
                      +.++||| ..+.+++...+..+|++|+|+|++.+...    .+..+...++.+++|+++||+|+++..+....    .++
T Consensus        90 iiD~PGH-~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~i~~iIV~vNK~Dl~~~~~~~~~~~~~~~~  168 (205)
T d2qn6a3          90 FIDAPGH-EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQF  168 (205)
T ss_dssp             EEECSCH-HHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred             EeccchH-HHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHcCCceeeeccccCCCccchHHHHHHHHHHHH
Confidence            7899999 88999999999999999999999998632    23334444556789999999999987643322    222


Q ss_pred             HHhc---CceEEEeccccccchhhhHHHHHHhh
Q 021210          172 FAKQ---GTKVIFSNGQLGMGTMKLSRLAKALA  201 (316)
Q Consensus       172 ~~~~---g~~vi~iSa~~g~gi~~L~~~L~~l~  201 (316)
                      +...   ..+++++||++|.|+++|.+.+..+.
T Consensus       169 l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~i  201 (205)
T d2qn6a3         169 TKGTWAENVPIIPVSALHKINIDSLIEGIEEYI  201 (205)
T ss_dssp             HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             hccccCCCCeEEEEeCCCCCChHHHHHHHHhhC
Confidence            2222   25689999999999999988776653

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.16  E-value=9.8e-11  Score=99.62  Aligned_cols=100  Identities=18%  Similarity=0.194  Sum_probs=75.1

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC----CcHHHHHHhCCCCEEEEEEccCCCChHhHHH----HHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST----THPLMDQWLGNRKRILVLNREDMISMADRNA----WATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~----~~~~i~~~l~~k~~IlVlNK~DLv~~~~~~~----~~~~  171 (316)
                      +-++||| ..+.+++...+..+|++++|+|+..+...    .+..+...++.+++++++||+|+.+..+..+    ..++
T Consensus        82 ~iDtPGh-~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~~~~iiv~inK~D~~d~~~~~~~~~~~~~~  160 (195)
T d1kk1a3          82 FIDAPGH-EALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEF  160 (195)
T ss_dssp             EEECSSH-HHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred             eeccchh-hhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhcCccceeeeecccchhhHHHHHHHHHHHHH
Confidence            5588999 88999999999999999999999987533    2233444455677899999999998754322    2222


Q ss_pred             HHhcC---ceEEEeccccccchhhhHHHHHHh
Q 021210          172 FAKQG---TKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       172 ~~~~g---~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      +...+   .+++++||++|+|+++|.+.+.++
T Consensus       161 ~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~  192 (195)
T d1kk1a3         161 IEGTVAENAPIIPISALHGANIDVLVKAIEDF  192 (195)
T ss_dssp             HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             hccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            32222   468999999999999998877664

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.16  E-value=1.7e-11  Score=100.13  Aligned_cols=60  Identities=32%  Similarity=0.431  Sum_probs=50.2

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEE--Ee-CCcEEEEeCCCcccCCC
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-GKDLEFLDSPGIIPMRI  277 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~--~~-~~~~~liDTPGi~~~~~  277 (316)
                      ++|+++|.||||||||+|+|++.+...++..||+|++....  .. +..+.++||||+.....
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~   64 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASD   64 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCceeeeccccccccccc
Confidence            68999999999999999999999888899999999885432  22 45788999999986543

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.15  E-value=2.9e-12  Score=104.84  Aligned_cols=57  Identities=39%  Similarity=0.556  Sum_probs=47.9

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEE--e-CCcEEEEeCCCccc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-GKDLEFLDSPGIIP  274 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~--~-~~~~~liDTPGi~~  274 (316)
                      +||+++|.||||||||+|+|++++...++..||+|+......  . +..+.++||||+..
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~   60 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRS   60 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCCeeEEecccccccc
Confidence            579999999999999999999998889999999998853322  2 44678999999864

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.12  E-value=1.3e-10  Score=96.99  Aligned_cols=93  Identities=17%  Similarity=0.115  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC----CCCEEEEEEccCCCChHhHHHHHHHHHh-cC-ceEEE
Q 021210          108 AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG----NRKRILVLNREDMISMADRNAWATYFAK-QG-TKVIF  181 (316)
Q Consensus       108 ~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~----~k~~IlVlNK~DLv~~~~~~~~~~~~~~-~g-~~vi~  181 (316)
                      ..+.+.+...+++||++|+|+|++.+....+..+.+.+.    ++|+++|+||+|+.+..+  ++.+.+.+ .+ .++++
T Consensus        72 ~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~i~~~l~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~  149 (178)
T d1wf3a1          72 EFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPE--EAMKAYHELLPEAEPRM  149 (178)
T ss_dssp             HHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHH--HHHHHHHHTSTTSEEEE
T ss_pred             hhcccccccccccccceeeeechhhhhcccccchhhheeccccchhhhhhhcccccccCHH--HHHHHHHhhcccCceEE
Confidence            345556667789999999999999987766666666553    679999999999987543  23333433 23 57889


Q ss_pred             eccccccchhhhHHHHHHhhh
Q 021210          182 SNGQLGMGTMKLSRLAKALAS  202 (316)
Q Consensus       182 iSa~~g~gi~~L~~~L~~l~~  202 (316)
                      +||++|.|+++|.+.+.+..+
T Consensus       150 iSA~~~~gi~~L~~~i~~~lp  170 (178)
T d1wf3a1         150 LSALDERQVAELKADLLALMP  170 (178)
T ss_dssp             CCTTCHHHHHHHHHHHHTTCC
T ss_pred             EecCCCCCHHHHHHHHHHhCC
Confidence            999999999999888776543

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.10  E-value=8.5e-12  Score=104.76  Aligned_cols=55  Identities=33%  Similarity=0.506  Sum_probs=42.7

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEe--CCcEEEEeCCCccc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF--GKDLEFLDSPGIIP  274 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~--~~~~~liDTPGi~~  274 (316)
                      +|+|+|+||||||||+|+|++.+. .++..+++|++..  ....  +..+.++||||+..
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~-~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~   61 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKP-KIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIE   61 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECC-EESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCC-ceecCCCceEeeeeceeEecCCcEEEEecCCCccc
Confidence            489999999999999999998875 5666777776632  2222  34689999999853

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.09  E-value=4.9e-11  Score=99.57  Aligned_cols=59  Identities=39%  Similarity=0.557  Sum_probs=49.5

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEE---eCCcEEEEeCCCcccCCC
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR---FGKDLEFLDSPGIIPMRI  277 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~---~~~~~~liDTPGi~~~~~  277 (316)
                      .|+++|.+|||||||+|+|++.+...++..++||++.....   .+..+.++||||+.....
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~   68 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMD   68 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeeeeeeeeccccccccccc
Confidence            59999999999999999999998888999999998865432   245689999999975443

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.08  E-value=1.4e-11  Score=112.69  Aligned_cols=57  Identities=26%  Similarity=0.327  Sum_probs=29.3

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE---E--E----------------------eCCcEEEEeCC
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW---V--R----------------------FGKDLEFLDSP  270 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~---~--~----------------------~~~~~~liDTP  270 (316)
                      ++|++||+||||||||+|+|++.+ ..++++|+||.+...   +  .                      ....+.++|+|
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~-~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~p   79 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA   79 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCC-CchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECC
Confidence            369999999999999999999875 699999999987321   1  0                      01248899999


Q ss_pred             CcccC
Q 021210          271 GIIPM  275 (316)
Q Consensus       271 Gi~~~  275 (316)
                      |+.+.
T Consensus        80 Gli~g   84 (319)
T d1wxqa1          80 GLVPG   84 (319)
T ss_dssp             -----
T ss_pred             Ccccc
Confidence            99864

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.08  E-value=4.6e-11  Score=108.60  Aligned_cols=62  Identities=29%  Similarity=0.333  Sum_probs=50.5

Q ss_pred             ccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeC------------------CcEEEEeCCCccc
Q 021210          215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG------------------KDLEFLDSPGIIP  274 (316)
Q Consensus       215 ~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~------------------~~~~liDTPGi~~  274 (316)
                      +..++|++||+||||||||+|+|++.....++++|+||.+.  -.+.+.                  ..+.++|.||+.+
T Consensus         8 ~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~   87 (296)
T d1ni3a1           8 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   87 (296)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence            35689999999999999999999988777899999999873  233332                  2578999999986


Q ss_pred             CC
Q 021210          275 MR  276 (316)
Q Consensus       275 ~~  276 (316)
                      ..
T Consensus        88 gA   89 (296)
T d1ni3a1          88 GA   89 (296)
T ss_dssp             CC
T ss_pred             cc
Confidence            53

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.07  E-value=8.6e-11  Score=111.33  Aligned_cols=63  Identities=24%  Similarity=0.219  Sum_probs=45.7

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcc----cccCCCCCceeeEEEEEe--CCcEEEEeCCCcccCCCC
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRM----CPAAPRPGVTRVLKWVRF--GKDLEFLDSPGIIPMRIS  278 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~----~~vs~~pgtT~~~~~~~~--~~~~~liDTPGi~~~~~~  278 (316)
                      .+++|+++|.||||||||||+|+|...    ....+..+||++...+..  ..++.|+||||+......
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~~~~~~l~DtPG~~~~~~~  123 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFP  123 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccCCCeEEEEeCCCccccccc
Confidence            368999999999999999999998543    233445678988766654  346999999999866543

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.07  E-value=2.1e-10  Score=98.84  Aligned_cols=114  Identities=18%  Similarity=0.089  Sum_probs=82.3

Q ss_pred             CcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHH---HhCC
Q 021210           73 SIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQ---WLGN  147 (316)
Q Consensus        73 ~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~---~l~~  147 (316)
                      .|-...|++.++|+|..+..|....+.  +-++||| ..+.+++...++.+|++|+|+||..+......+...   .++-
T Consensus        42 ~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh-~df~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~~gi  120 (204)
T d2c78a3          42 IDKAPEERARGITINTAHVEYETAKRHYSHVDCPGH-ADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGV  120 (204)
T ss_dssp             HSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCS-GGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTC
T ss_pred             cccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCc-hhhHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCC
Confidence            455567899999999999988877665  7799999 779999999999999999999999988664333333   3334


Q ss_pred             CCEEEEEEccCCCChHh-H----HHHHHHHHhcC-----ceEEEeccccc
Q 021210          148 RKRILVLNREDMISMAD-R----NAWATYFAKQG-----TKVIFSNGQLG  187 (316)
Q Consensus       148 k~~IlVlNK~DLv~~~~-~----~~~~~~~~~~g-----~~vi~iSa~~g  187 (316)
                      +++++++||+|+++..+ .    ++..+.+...+     ..+++.|+..+
T Consensus       121 ~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~i~~sa~~~  170 (204)
T d2c78a3         121 PYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLA  170 (204)
T ss_dssp             CCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHH
T ss_pred             CeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCCCcccceeeeeechhh
Confidence            55778899999986432 1    22233333333     45677777543

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.02  E-value=1.7e-10  Score=102.28  Aligned_cols=126  Identities=17%  Similarity=0.152  Sum_probs=64.7

Q ss_pred             CCCCCCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC----------
Q 021210           67 SNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL----------  134 (316)
Q Consensus        67 ~~~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~----------  134 (316)
                      ...+-+.|....|++.+.+++.....+....+.  +.+.||| ..+.+++...+..+|.+++|+|+..+.          
T Consensus        71 ~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~i~~iDtPGH-~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~Q  149 (245)
T d1r5ba3          71 WYLSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGH-KGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQ  149 (245)
T ss_dssp             -----------------------CCEEECSSEEEEECCCCC------------TTSCSEEEEEEECSTTHHHHTTSTTCC
T ss_pred             chhhhhhhccccccccCccccccccccccccceeeeeccccc-ccchhhhhhhhhhhcceeeEEEcCCCccCCccccccc
Confidence            344556778888999999999998888777655  7899999 889999999999999999999998763          


Q ss_pred             CCCcHHHHHHhCCCCEEEEEEccCCCChH----hHHH----HHHHHHhc-C------ceEEEeccccccchhhh
Q 021210          135 STTHPLMDQWLGNRKRILVLNREDMISMA----DRNA----WATYFAKQ-G------TKVIFSNGQLGMGTMKL  193 (316)
Q Consensus       135 ~~~~~~i~~~l~~k~~IlVlNK~DLv~~~----~~~~----~~~~~~~~-g------~~vi~iSa~~g~gi~~L  193 (316)
                      +..+..+...++.+++++++||+|+.+.+    ..++    ..+++.+. +      ..++++||++|+|+.++
T Consensus       150 T~e~l~l~~~~~i~~iiv~iNKmD~~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~  223 (245)
T d1r5ba3         150 TREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDR  223 (245)
T ss_dssp             HHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSC
T ss_pred             hHHHHHHHHHcCCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccc
Confidence            22334445555667889999999997421    1122    22223332 2      46899999999998764

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.01  E-value=6.9e-11  Score=98.89  Aligned_cols=58  Identities=40%  Similarity=0.646  Sum_probs=43.9

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEe-CCcEEEEeCCCcc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF-GKDLEFLDSPGII  273 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~-~~~~~liDTPGi~  273 (316)
                      ..++|+++|.+|||||||+|+|++.+...+++.+++|+...  .+.. +..+.++||||+.
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~   67 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLR   67 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCceeeeeccCCcc
Confidence            46899999999999999999999999889999999998853  2222 5578999999985

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.00  E-value=1.2e-10  Score=97.24  Aligned_cols=55  Identities=38%  Similarity=0.570  Sum_probs=40.5

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEe--CCcEEEEeCCCccc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF--GKDLEFLDSPGIIP  274 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~--~~~~~liDTPGi~~  274 (316)
                      .|+|+|.||||||||+|+|++.+.. +++.+++|+...  ....  +..+.++||||+..
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~   61 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPK-IAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIE   61 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCE-ECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCc-eeccCCCceeeeeceeeecCCCeEEEcCCCeeec
Confidence            4899999999999999999988754 444555444432  2222  45689999999874

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=98.99  E-value=9e-10  Score=90.98  Aligned_cols=94  Identities=14%  Similarity=0.148  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChHhHHHHHHHHHhcC-ceEEEecc
Q 021210          108 AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQG-TKVIFSNG  184 (316)
Q Consensus       108 ~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g-~~vi~iSa  184 (316)
                      ....+.....+..+|++++++|++.+....+..+..++.  ++|+++|+||+|+.+..+. +..+.+.+.+ .+++++||
T Consensus        68 ~~~~~~~~~~~~~ad~i~~~~~~~~~~~~~~~~~~~~l~~~~~pviiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~i~iSA  146 (171)
T d1mkya1          68 QKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFER-EVKPELYSLGFGEPIPVSA  146 (171)
T ss_dssp             HHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHHHH-HTHHHHGGGSSCSCEECBT
T ss_pred             cccccccccccccCcEEEEeecccccccccccccccccccccccccccchhhhhhhhhhh-HHHHHHHhcCCCCeEEEec
Confidence            445556677789999999999999888777777766654  7899999999999755432 2333344444 46799999


Q ss_pred             ccccchhhhHHHHHHhhh
Q 021210          185 QLGMGTMKLSRLAKALAS  202 (316)
Q Consensus       185 ~~g~gi~~L~~~L~~l~~  202 (316)
                      ++|.|+++|++.|.+..+
T Consensus       147 k~g~gid~L~~~i~~~l~  164 (171)
T d1mkya1         147 EHNINLDTMLETIIKKLE  164 (171)
T ss_dssp             TTTBSHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHhCC
Confidence            999999999987766443

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.97  E-value=1.6e-11  Score=107.33  Aligned_cols=103  Identities=18%  Similarity=0.111  Sum_probs=75.2

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCEEEEEEccCCCChHhH------------
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADR------------  165 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~IlVlNK~DLv~~~~~------------  165 (316)
                      +-++||| ..+.+.+...+..+|++|+|+||..++......+..++  .++|+|+|+||+|+++....            
T Consensus        74 ~iDtPGh-~~f~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~  152 (227)
T d1g7sa4          74 FIDTPGH-EAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSK  152 (227)
T ss_dssp             EECCCTT-SCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTT
T ss_pred             cccccce-ecccccchhcccccceEEEEEecccCcccchhHHHHHhhcCCCeEEEEEECccCCCchhhhhhHHHHHhhhc
Confidence            5689999 56666667778999999999999998877766666655  37899999999998753210            


Q ss_pred             ------HH-------HHHHHHhcC---------------ceEEEeccccccchhhhHHHHHHhhhh
Q 021210          166 ------NA-------WATYFAKQG---------------TKVIFSNGQLGMGTMKLSRLAKALASD  203 (316)
Q Consensus       166 ------~~-------~~~~~~~~g---------------~~vi~iSa~~g~gi~~L~~~L~~l~~~  203 (316)
                            ..       ....+...+               .+++++||++|.|+++|.+.+..+.++
T Consensus       153 ~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~  218 (227)
T d1g7sa4         153 QDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ  218 (227)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence                  00       011111111               357899999999999999988877643

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.95  E-value=1.5e-10  Score=104.22  Aligned_cols=58  Identities=40%  Similarity=0.532  Sum_probs=41.9

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEeC------------------CcEEEEeCCCcccC
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG------------------KDLEFLDSPGIIPM  275 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~~------------------~~~~liDTPGi~~~  275 (316)
                      .++|++||+||||||||+|+|++.+ ..++++|+||.+..  .+.+.                  ..+.++|.||+.+.
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~-~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~g   79 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG   79 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCC-CccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCC
Confidence            4689999999999999999999876 58999999998743  23322                  34789999999853

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.91  E-value=1.2e-09  Score=90.90  Aligned_cols=94  Identities=21%  Similarity=0.206  Sum_probs=70.6

Q ss_pred             HHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-------CCCCEEEEEEccCCCChHhHHHHHHHHHhcCceEEEe
Q 021210          110 TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-------GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFS  182 (316)
Q Consensus       110 ~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l-------~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~~vi~i  182 (316)
                      ...++...+..+|++++++|+..........+..++       .++|+++|+||+|+.+.++.+...+.+.+.+.+++++
T Consensus        69 ~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~i  148 (180)
T d1udxa2          69 LGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPV  148 (180)
T ss_dssp             SCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEC
T ss_pred             HHHHHHHHHHhhhhhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCeEEEE
Confidence            344666788999999999998643221111111111       1589999999999999888777777777778889999


Q ss_pred             ccccccchhhhHHHHHHhhhh
Q 021210          183 NGQLGMGTMKLSRLAKALASD  203 (316)
Q Consensus       183 Sa~~g~gi~~L~~~L~~l~~~  203 (316)
                      ||++|.|+++|++.+.++...
T Consensus       149 SA~tg~gid~L~~~i~~~l~~  169 (180)
T d1udxa2         149 SALTGAGLPALKEALHALVRS  169 (180)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHT
T ss_pred             EcCCCCCHHHHHHHHHHHHhh
Confidence            999999999999988776543

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.90  E-value=2.6e-09  Score=89.96  Aligned_cols=91  Identities=14%  Similarity=0.151  Sum_probs=69.3

Q ss_pred             HHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChHhHHHHHHHHHh-----cCceEEEec
Q 021210          111 EKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAK-----QGTKVIFSN  183 (316)
Q Consensus       111 ~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~~~~~~~~~~~-----~g~~vi~iS  183 (316)
                      .....+....+|+|++|+|++.+....+.++.+++.  ++|+++|+||+|+.+..+.++..+.+.+     ...+++++|
T Consensus        96 ~~~~~~~~~~~~~vi~viD~~~~~~~~~~~~~~~l~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~S  175 (195)
T d1svia_          96 IETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFS  175 (195)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECC
T ss_pred             HhhhhccccchhhhhhhhhccccccccccccccccccccCcceechhhccccCHHHHHHHHHHHHHHhcccCCCCEEEEe
Confidence            334445567789999999999888776666666654  7899999999999887765555444432     125789999


Q ss_pred             cccccchhhhHHHHHHhh
Q 021210          184 GQLGMGTMKLSRLAKALA  201 (316)
Q Consensus       184 a~~g~gi~~L~~~L~~l~  201 (316)
                      |++|.|+++|.+.|.++.
T Consensus       176 A~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         176 SETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             TTTCTTHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            999999999998877653

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=98.87  E-value=2.9e-10  Score=94.06  Aligned_cols=57  Identities=37%  Similarity=0.527  Sum_probs=34.8

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe---CCcEEEEeCCCcccC
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPM  275 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~~~  275 (316)
                      +|+++|.+|||||||+|+|++.+...++..+|+|+......+   ...+.+.||||+...
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~   61 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDN   61 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccccccccccccceeee
Confidence            589999999999999999999888889999999988533222   345889999999754

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.85  E-value=1.4e-09  Score=94.70  Aligned_cols=123  Identities=14%  Similarity=0.102  Sum_probs=80.7

Q ss_pred             CCCCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC----------CC
Q 021210           69 NSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL----------ST  136 (316)
Q Consensus        69 ~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~----------~~  136 (316)
                      .+.+.|....|++.+.+++.....|......  +-++||| ..+..++...+.-+|.+|+|||+..+.          +.
T Consensus        52 ~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~i~iiDtPGH-~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~  130 (224)
T d1jnya3          52 FAFLLDRLKEERERGVTINLTFMRFETKKYFFTIIDAPGH-RDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTR  130 (224)
T ss_dssp             HHHHHHHHHHC-----------CEEECSSCEEEECCCSSS-TTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHH
T ss_pred             ccccccCchhhhcCCccccceEEEEecCCceeEEeeCCCc-HHHHHHHHHHHHhhceEEEEEecccCcccccccccchhH
Confidence            3445677778888899999888888766554  7899999 889999999999999999999998863          22


Q ss_pred             CcHHHHHHhCCCCEEEEEEccCCCChHh----H----HHHHHHHHhcC-----ceEEEeccccccchhh
Q 021210          137 THPLMDQWLGNRKRILVLNREDMISMAD----R----NAWATYFAKQG-----TKVIFSNGQLGMGTMK  192 (316)
Q Consensus       137 ~~~~i~~~l~~k~~IlVlNK~DLv~~~~----~----~~~~~~~~~~g-----~~vi~iSa~~g~gi~~  192 (316)
                      ++..+...++.+++|+++||+|+.....    .    ....+++...+     ..++++||..|.|+..
T Consensus       131 e~l~~~~~~~~~~iIv~iNK~D~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         131 EHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             HHHHHHHHTTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             HHHHHHHHhCCCceEEEEEcccCCCccccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            3445556666778999999999975221    1    11222233333     4678999999998743

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.83  E-value=2.2e-09  Score=90.39  Aligned_cols=60  Identities=35%  Similarity=0.622  Sum_probs=41.9

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcc-cccCCCCCceeeEEEEEeCCcEEEEeCCCcccCCCC
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRIS  278 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~-~~vs~~pgtT~~~~~~~~~~~~~liDTPGi~~~~~~  278 (316)
                      +|+++|+||||||||||+|++++. ..++..+++|++.........+.++|++|+......
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~d~~~~~~~~~~   85 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVS   85 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTTEEEEECCCBCCCSSC
T ss_pred             EEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccccceEEEEEeecccccc
Confidence            799999999999999999998653 577888999999888887888899999999755443

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.79  E-value=1.8e-09  Score=89.11  Aligned_cols=55  Identities=33%  Similarity=0.491  Sum_probs=43.5

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEE-Ee--CCcEEEEeCCCcc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV-RF--GKDLEFLDSPGII  273 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~-~~--~~~~~liDTPGi~  273 (316)
                      .|+|+|.||||||||||+|++++...++..++||+..... ..  ...+..+|+||+.
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~   64 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLH   64 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCceeEeecCCCce
Confidence            4899999999999999999999888888888888764322 22  3346678999985

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.77  E-value=1.3e-08  Score=82.48  Aligned_cols=86  Identities=17%  Similarity=0.269  Sum_probs=68.7

Q ss_pred             HHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCEEEEEEccCCCChHhHHHHHHHHHhcCceEEEeccccccchh
Q 021210          112 KELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTM  191 (316)
Q Consensus       112 r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~~vi~iSa~~g~gi~  191 (316)
                      +.....+.++|++++|+|++++....+..+...+...++++++||+|+.+....++..+.+. .+.+++++||++|.|++
T Consensus        72 ~~~~~~~~~ad~ii~v~d~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~~~~~~~~~~~-~~~~~~~vSA~~g~gi~  150 (160)
T d1xzpa2          72 ERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEKINEEEIKNKLG-TDRHMVKISALKGEGLE  150 (160)
T ss_dssp             HHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHHTTSSEEEEEEECSSCCCCCHHHHHHHHT-CSTTEEEEEGGGTCCHH
T ss_pred             HHHHHHHHhCCEEEEEEeCCCCcchhhhhhhhhcccccceeeeeeccccchhhhHHHHHHhC-CCCcEEEEECCCCCCHH
Confidence            44566689999999999999988777777777778899999999999998766554443332 34678999999999999


Q ss_pred             hhHHHHH
Q 021210          192 KLSRLAK  198 (316)
Q Consensus       192 ~L~~~L~  198 (316)
                      +|++.|.
T Consensus       151 ~L~~~I~  157 (160)
T d1xzpa2         151 KLEESIY  157 (160)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9987754

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.75  E-value=4.2e-08  Score=81.04  Aligned_cols=89  Identities=19%  Similarity=0.155  Sum_probs=60.2

Q ss_pred             HHHHHHhhcCeEEEEEeCCC-----------CCCCCcHHHHHHhC--CCCEEEEEEccCCCChHh-HHH-HHHHHHhcC-
Q 021210          113 ELKDQLKLMDVVIEVRDARI-----------PLSTTHPLMDQWLG--NRKRILVLNREDMISMAD-RNA-WATYFAKQG-  176 (316)
Q Consensus       113 ~l~~~i~~aDlIl~VvDar~-----------~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~-~~~-~~~~~~~~g-  176 (316)
                      .+...++.+|++++|+|++.           .....+..+.+++.  ++|+++|+||+|++...+ ... +.+.+. .. 
T Consensus        74 ~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~-~~~  152 (184)
T d2cxxa1          74 FIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFE-VPL  152 (184)
T ss_dssp             HHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHT-CCG
T ss_pred             hhhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHcCCCEEEEEeeeehhhhHHHHHHHHHHHhc-ccc
Confidence            34455678999999999974           33444445555443  789999999999885433 111 222221 11 


Q ss_pred             ----ceEEEeccccccchhhhHHHHHHhhh
Q 021210          177 ----TKVIFSNGQLGMGTMKLSRLAKALAS  202 (316)
Q Consensus       177 ----~~vi~iSa~~g~gi~~L~~~L~~l~~  202 (316)
                          ..++++||++|.|+++|.+.+.++.+
T Consensus       153 ~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~  182 (184)
T d2cxxa1         153 SEIDKVFIPISAKFGDNIERLKNRIFEVIR  182 (184)
T ss_dssp             GGHHHHEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHHcc
Confidence                24789999999999999988776543

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.66  E-value=3.7e-09  Score=89.28  Aligned_cols=54  Identities=30%  Similarity=0.412  Sum_probs=41.5

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe---CCcEEEEeCCCcccCC
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMR  276 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~~~~  276 (316)
                      .+|+++|.||||||||+|+|.+.+.     .|+||++.....+   +..+.++||||....+
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~~~-----~~~tt~~~~~~~~~~~~~~~~l~D~~g~~~~~   60 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTDSV-----RPTVVSQEPLSAADYDGSGVTLVDFPGHVKLR   60 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSSC-----CCBCCCSSCEEETTGGGSSCEEEECCCCGGGT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC-----CCeEEecceEEEEEeCCeEEEEEecccccchh
Confidence            3699999999999999999998653     3667776544433   4568999999987543

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=98.65  E-value=5e-08  Score=80.89  Aligned_cols=89  Identities=18%  Similarity=0.309  Sum_probs=65.3

Q ss_pred             HHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCEEEEEEccCCCChHh--HHHHHHHHHhc-----CceEEEe
Q 021210          112 KELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMAD--RNAWATYFAKQ-----GTKVIFS  182 (316)
Q Consensus       112 r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~IlVlNK~DLv~~~~--~~~~~~~~~~~-----g~~vi~i  182 (316)
                      ..+...++.+|++++|+|+..+.......+..++  .+.|.|+|+||+|+....+  ..+..+.+.+.     ..+++++
T Consensus        83 ~~~~~~~~~~dvii~v~d~~~~~~~~~~~~~~~~~~~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v  162 (186)
T d1mkya2          83 YRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFT  162 (186)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred             HHHHHHHhcCCEEEEeecccccchhhHHHHHHHHHHcCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeEEEE
Confidence            4566778899999999999988776665555544  3789999999999975443  23333333321     2468999


Q ss_pred             ccccccchhhhHHHHHHh
Q 021210          183 NGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       183 Sa~~g~gi~~L~~~L~~l  200 (316)
                      ||++|.|+++|.+.|.+.
T Consensus       163 Sa~~g~gv~~L~~~i~~~  180 (186)
T d1mkya2         163 SADKGWNIDRMIDAMNLA  180 (186)
T ss_dssp             BTTTTBSHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHH
Confidence            999999999998887654

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=98.58  E-value=2.5e-08  Score=80.77  Aligned_cols=90  Identities=14%  Similarity=0.064  Sum_probs=63.3

Q ss_pred             chHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHH-HH---h-CCCCEEEEEEccCCCChHhHHHHHHHHHhcCceE
Q 021210          105 GHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMD-QW---L-GNRKRILVLNREDMISMADRNAWATYFAKQGTKV  179 (316)
Q Consensus       105 gh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~-~~---l-~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~~v  179 (316)
                      .+.....+........+|++++++|+..........+. ..   . .++|+++|+||+||.+.....     .+..+.++
T Consensus        65 ~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~~-----~~~~~~~~  139 (161)
T d2gj8a1          65 EVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGM-----SEVNGHAL  139 (161)
T ss_dssp             HHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCEE-----EEETTEEE
T ss_pred             cchhHHHHHHHHHHHhccccceeeccccccchhhhhhhhhhhhhcccccceeeccchhhhhhhHHHH-----HHhCCCcE
Confidence            33444556667778999999999999987665444322 12   2 278999999999987543210     01123678


Q ss_pred             EEeccccccchhhhHHHHHH
Q 021210          180 IFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       180 i~iSa~~g~gi~~L~~~L~~  199 (316)
                      +++||++|.|+++|.+.|.+
T Consensus       140 ~~iSAk~~~gi~~L~~~l~~  159 (161)
T d2gj8a1         140 IRLSARTGEGVDVLRNHLKQ  159 (161)
T ss_dssp             EECCTTTCTTHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            99999999999998887654

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=98.57  E-value=2e-08  Score=82.62  Aligned_cols=56  Identities=20%  Similarity=0.350  Sum_probs=30.8

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee-EEEEEeCCcEEEEeCCCc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV-LKWVRFGKDLEFLDSPGI  272 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~-~~~~~~~~~~~liDTPGi  272 (316)
                      .++|+++|+||||||||+|+|++.+........++|+. ...+....+...+++.+.
T Consensus        16 ~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (188)
T d1puia_          16 GIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGY   72 (188)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecc
Confidence            57899999999999999999998876655555554444 444443334444444443

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.54  E-value=1.6e-07  Score=77.85  Aligned_cols=102  Identities=17%  Similarity=0.030  Sum_probs=66.2

Q ss_pred             cccccchHH------HHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHH------H-----hCCCCEEEEEEccCCCCh
Q 021210          100 VQWYPGHIA------KTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQ------W-----LGNRKRILVLNREDMISM  162 (316)
Q Consensus       100 i~~~Pgh~~------~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~------~-----l~~k~~IlVlNK~DLv~~  162 (316)
                      +-++||+..      ...++....+.++++++++++..............      .     +.++|+++|+||+|+.+.
T Consensus        53 ~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~  132 (185)
T d1lnza2          53 MADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA  132 (185)
T ss_dssp             EEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH
T ss_pred             EecCCCcccCchHHHHHHHHHHHHHHHhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhH
Confidence            346788632      22345566788999999999887554433222111      1     125799999999999876


Q ss_pred             HhHHHHHHHHHhcCceEEEeccccccchhhhHHHHHHhh
Q 021210          163 ADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (316)
Q Consensus       163 ~~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l~  201 (316)
                      .+..+........+.+++++||++|.|+++|.+.+.+..
T Consensus       133 ~~~~~~~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~L  171 (185)
T d1lnza2         133 AENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQL  171 (185)
T ss_dssp             HHHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence            543222111112346789999999999999988776654

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=98.52  E-value=1.9e-08  Score=83.81  Aligned_cols=57  Identities=23%  Similarity=0.331  Sum_probs=33.8

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCC------CCceeeEE---EEEeCCcEEEEeCCCcc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPR------PGVTRVLK---WVRFGKDLEFLDSPGII  273 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~------pgtT~~~~---~~~~~~~~~liDTPGi~  273 (316)
                      .++|+++|+||+|||||+|+|++.......+.      .|.|.+..   ....+..+.++||||..
T Consensus         5 ~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~   70 (179)
T d1wb1a4           5 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHA   70 (179)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHH
T ss_pred             CEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCcccccccccccc
Confidence            46899999999999999999997654333332      23333321   12224467899999964

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.51  E-value=3e-08  Score=79.24  Aligned_cols=54  Identities=22%  Similarity=0.229  Sum_probs=41.6

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEeCCcEEEEeCCCcc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGII  273 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~~~~~~liDTPGi~  273 (316)
                      ||+++|.||||||||+|+|.+.+...+.+..+++.....+ .+....+.||+|..
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~~~~~~~   55 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAI-GNIKFTTFDLGGHI   55 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEECC-TTCCEEEEECCCSG
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCeeeceeeEeEEEecc-CCeeEEEEeeccch
Confidence            6899999999999999999998876666666666543221 24467899999874

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=98.45  E-value=5e-08  Score=80.16  Aligned_cols=57  Identities=26%  Similarity=0.390  Sum_probs=43.7

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCccc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGIIP  274 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~~  274 (316)
                      ..+||+++|.+|||||||+|+|.+.....+.+..|++...  +.. +-.+.++|++|-..
T Consensus        15 ~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~--i~~~~~~~~i~d~~g~~~   72 (176)
T d1fzqa_          15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKS--VQSQGFKLNVWDIGGQRK   72 (176)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEE--EEETTEEEEEEECSSCGG
T ss_pred             CEEEEEEECCCCCCHHHHHHHHhcCCCCcceeeeeeeEEE--eccCCeeEeEeecccccc
Confidence            4689999999999999999999988766666666665443  222 33578999999764

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=98.45  E-value=6.8e-08  Score=78.58  Aligned_cols=53  Identities=21%  Similarity=0.326  Sum_probs=37.8

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEE--Ee-CCcEEEEeCCCcc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-GKDLEFLDSPGII  273 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~--~~-~~~~~liDTPGi~  273 (316)
                      .+||+++|.+|||||||+|+|.+.....+++    |.+....  .. +..+.++||||-.
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~G~~   57 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDVDTISP----TLGFNIKTLEHRGFKLNIWDVGGQK   57 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCCSSCCC----CSSEEEEEEEETTEEEEEEEECCSH
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCCCcccc----eEeeeeeeccccccceeeeecCcch
Confidence            4689999999999999999998876443333    3333222  22 3368899999953

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.44  E-value=9.5e-08  Score=77.91  Aligned_cols=95  Identities=9%  Similarity=-0.007  Sum_probs=63.9

Q ss_pred             cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHhCCCCEEEEEEccCCCChHh--HHHHHHHHHh
Q 021210          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWLGNRKRILVLNREDMISMAD--RNAWATYFAK  174 (316)
Q Consensus       102 ~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l~~k~~IlVlNK~DLv~~~~--~~~~~~~~~~  174 (316)
                      +++|+ .++.......++.+|++++|+|..++.+..+     .++.+...+.|+++|.||+|+.+..+  .++..++.++
T Consensus        57 d~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~  135 (164)
T d1z2aa1          57 DTAGQ-EEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKR  135 (164)
T ss_dssp             CCTTG-GGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHH
T ss_pred             ccCCc-cchhhhhhhhhccCceEEEEEeccchhhhhhcccccccccccCCCceEEEeeccCCcccceeeeehhhHHHHHH
Confidence            34555 3344444567899999999999987543322     12223345789999999999865422  1222333445


Q ss_pred             cCceEEEeccccccchhhhHHHH
Q 021210          175 QGTKVIFSNGQLGMGTMKLSRLA  197 (316)
Q Consensus       175 ~g~~vi~iSa~~g~gi~~L~~~L  197 (316)
                      .+..++.+||++|.|++++.+.|
T Consensus       136 ~~~~~~e~Sak~g~~v~e~f~~l  158 (164)
T d1z2aa1         136 LKLRFYRTSVKEDLNVSEVFKYL  158 (164)
T ss_dssp             HTCEEEECBTTTTBSSHHHHHHH
T ss_pred             cCCEEEEeccCCCcCHHHHHHHH
Confidence            67789999999999999987654

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.42  E-value=7e-08  Score=82.57  Aligned_cols=58  Identities=24%  Similarity=0.368  Sum_probs=42.0

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCc-----------ccccCCCC-----CceeeEEEEEe---CCcEEEEeCCCccc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRR-----------MCPAAPRP-----GVTRVLKWVRF---GKDLEFLDSPGIIP  274 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~-----------~~~vs~~p-----gtT~~~~~~~~---~~~~~liDTPGi~~  274 (316)
                      .++|+++|.+|+|||||+|+|+...           .......|     |+|.+.....+   +.++.|+||||..+
T Consensus         3 ~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~d   79 (204)
T d2c78a3           3 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD   79 (204)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred             CeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchh
Confidence            4799999999999999999997321           11112222     88888654433   66799999999764

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=98.41  E-value=1.7e-07  Score=76.82  Aligned_cols=97  Identities=13%  Similarity=0.084  Sum_probs=64.7

Q ss_pred             ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHHH
Q 021210          101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL-----GNRKRILVLNREDMISMADRNAWATYFA  173 (316)
Q Consensus       101 ~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~~  173 (316)
                      -+++|+ ..+.......+..+|.+++|+|+.+..+..+.  .+....     .+.|+++|.||+|+.+..+.....+.+.
T Consensus        65 ~d~~g~-~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~  143 (176)
T d1fzqa_          65 WDIGGQ-RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLN  143 (176)
T ss_dssp             EECSSC-GGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTT
T ss_pred             eecccc-ccchhHHHHHhhccceeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHHHHHHH
Confidence            344555 55666677889999999999999865432221  112222     1579999999999986554333333321


Q ss_pred             -----hcCceEEEeccccccchhhhHHHHH
Q 021210          174 -----KQGTKVIFSNGQLGMGTMKLSRLAK  198 (316)
Q Consensus       174 -----~~g~~vi~iSa~~g~gi~~L~~~L~  198 (316)
                           ..+..++.+||++|+|++++.+.|.
T Consensus       144 ~~~~~~~~~~~~~~SA~tg~gv~e~~~~l~  173 (176)
T d1fzqa_         144 LHTIRDRVWQIQSCSALTGEGVQDGMNWVC  173 (176)
T ss_dssp             GGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred             HHHHHhcCCEEEEEeCCCCCCHHHHHHHHH
Confidence                 1235688899999999998877654

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.37  E-value=2.2e-07  Score=76.18  Aligned_cols=56  Identities=21%  Similarity=0.306  Sum_probs=38.9

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCccc-ccCCCCCceeeEEEEEeCC---cEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~-~vs~~pgtT~~~~~~~~~~---~~~liDTPGi~  273 (316)
                      +||+++|.+|||||||+|+|.+.... ...+.+|.+.....+....   .+.++||||-.
T Consensus         6 ~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e   65 (169)
T d3raba_           6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE   65 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred             EEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCch
Confidence            68999999999999999999865422 2233344444444444433   47799999953

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.36  E-value=1.6e-07  Score=76.52  Aligned_cols=56  Identities=23%  Similarity=0.326  Sum_probs=35.4

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEeC-C--cEEEEeCCCccc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG-K--DLEFLDSPGIIP  274 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~~-~--~~~liDTPGi~~  274 (316)
                      +||+++|.+|||||||+|++.+.. ...+..|.++.+..  .+..+ .  .+.++||||-..
T Consensus         3 ~Ki~vvG~~~vGKTSli~~l~~~~-~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~   63 (166)
T d1g16a_           3 MKILLIGDSGVGKSCLLVRFVEDK-FNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER   63 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCC-CCC-------CCEEEEEEESSSCEEEEEEECCTTGGG
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCC-CCCccCCccceeEEEEEEEECCEEEEEEEEECCCchh
Confidence            589999999999999999998754 23333454444433  33332 2  356899999743

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=98.36  E-value=1.2e-07  Score=75.71  Aligned_cols=56  Identities=18%  Similarity=0.302  Sum_probs=37.1

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCcccC
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGIIPM  275 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~~~  275 (316)
                      +||+++|.+|||||||+|+|.+.+......  .++........ .-.+.++|+||....
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~g~~~~   57 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIP--TIGFNVETVEYKNISFTVWDVGGQDKI   57 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCC--CSSCCEEEEECSSCEEEEEECCCCGGG
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcccc--ceeeEEEEEeeeeEEEEEecCCCcccc
Confidence            479999999999999999998765433222  21111112222 346789999998643

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=98.35  E-value=5.4e-07  Score=73.26  Aligned_cols=99  Identities=7%  Similarity=-0.036  Sum_probs=66.4

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHhC-----CCCEEEEEEccCCCChHhHHHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWLG-----NRKRILVLNREDMISMADRNAWATYF  172 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l~-----~k~~IlVlNK~DLv~~~~~~~~~~~~  172 (316)
                      +-++||+ ..+.......+..+|.+++|+|+.+..+..  ...+..++.     +.|+++|.||+|+.......+..+.+
T Consensus        51 i~D~~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~  129 (164)
T d1zd9a1          51 LWDIGGQ-PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKM  129 (164)
T ss_dssp             EEEECCS-HHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHT
T ss_pred             Eeecccc-ccccccccccccccchhhcccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHHHHHHH
Confidence            4567887 556666677899999999999987643321  112222322     57999999999997543333333332


Q ss_pred             H-----hcCceEEEeccccccchhhhHHHHHH
Q 021210          173 A-----KQGTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       173 ~-----~~g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      .     ..+..++.+||++|.|++++.+.|.+
T Consensus       130 ~~~~~~~~~~~~~e~Sa~~g~gv~e~~~~l~~  161 (164)
T d1zd9a1         130 NLSAIQDREICCYSISCKEKDNIDITLQWLIQ  161 (164)
T ss_dssp             TGGGCCSSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHHHhCCCEEEEEeCcCCcCHHHHHHHHHH
Confidence            1     22356789999999999987766543

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=3.9e-07  Score=74.56  Aligned_cols=97  Identities=12%  Similarity=-0.063  Sum_probs=59.8

Q ss_pred             ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-HH----HHHhC--CCCEEEEEEccCCCChHh--HHHHHHH
Q 021210          101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LM----DQWLG--NRKRILVLNREDMISMAD--RNAWATY  171 (316)
Q Consensus       101 ~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-~i----~~~l~--~k~~IlVlNK~DLv~~~~--~~~~~~~  171 (316)
                      -++||+ .++.......+..+|++|+|+|..++.+..+. .+    .....  ..|+++|.||+||.+..+  ..+..++
T Consensus        53 ~D~~g~-e~~~~~~~~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~  131 (168)
T d2gjsa1          53 YDIWEQ-DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRAC  131 (168)
T ss_dssp             EECC--------CHHHHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred             eecccc-cccceecccchhhhhhhceeccccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHH
Confidence            356776 44544455678999999999998765433221 11    11111  358999999999865422  1222333


Q ss_pred             HHhcCceEEEeccccccchhhhHHHHH
Q 021210          172 FAKQGTKVIFSNGQLGMGTMKLSRLAK  198 (316)
Q Consensus       172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~  198 (316)
                      ....+..++.+||++|.|++++...+.
T Consensus       132 ~~~~~~~~~e~Sak~~~~v~~~f~~l~  158 (168)
T d2gjsa1         132 AVVFDCKFIETSAALHHNVQALFEGVV  158 (168)
T ss_dssp             HHHHTSEEEECBTTTTBSHHHHHHHHH
T ss_pred             HHhcCCEEEEEeCCCCcCHHHHHHHHH
Confidence            445678889999999999998766543

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=7.1e-07  Score=73.94  Aligned_cols=98  Identities=13%  Similarity=0.077  Sum_probs=65.8

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh---C------CCCEEEEEEccCCCChHh--HHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL---G------NRKRILVLNREDMISMAD--RNAW  168 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l---~------~k~~IlVlNK~DLv~~~~--~~~~  168 (316)
                      +.+++|+ .++.......++.+|.+|+|+|..++.+..  .+..++   .      ..|+++|.||+|+....+  .++.
T Consensus        68 i~dt~G~-e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~  144 (186)
T d2f7sa1          68 LWDTAGQ-ERFRSLTTAFFRDAMGFLLMFDLTSQQSFL--NVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQA  144 (186)
T ss_dssp             EEEEESH-HHHHHHHHHHHTTCCEEEEEEETTCHHHHH--HHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHH
T ss_pred             cccCCcc-hhhHHHHHHHHhcCCEEEEEEeccccccce--eeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHH
Confidence            4456777 556655566789999999999987643221  222222   1      347889999999964422  1222


Q ss_pred             HHHHHhcCceEEEeccccccchhhhHHHHHHh
Q 021210          169 ATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       169 ~~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      .++.++.+..++.+||++|.|++++.+.+.+.
T Consensus       145 ~~~~~~~~~~~~e~Sak~~~~i~e~f~~l~~~  176 (186)
T d2f7sa1         145 RELADKYGIPYFETSAATGQNVEKAVETLLDL  176 (186)
T ss_dssp             HHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHH
T ss_pred             HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            33445567889999999999999887765543

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=2.4e-07  Score=75.96  Aligned_cols=54  Identities=20%  Similarity=0.359  Sum_probs=38.6

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEeCC---cEEEEeCCCc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGI  272 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~~~---~~~liDTPGi  272 (316)
                      +||+++|.+|||||||+|+|.+.. ......++++.+..  .+..+.   .+.++||||-
T Consensus         6 ~Ki~lvG~~~vGKTsLi~~l~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~   64 (171)
T d2ew1a1           6 FKIVLIGNAGVGKTCLVRRFTQGL-FPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ   64 (171)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSS-CCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCC-CCCcccccccceEEEEEEEECCEEEEEEEEECCCc
Confidence            689999999999999999999654 34444555555543  233332   3678999994

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.29  E-value=4.9e-07  Score=81.19  Aligned_cols=32  Identities=25%  Similarity=0.405  Sum_probs=25.0

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCC
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP  249 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~p  249 (316)
                      .+|+|||..++|||||||+|+|.....++..|
T Consensus        25 P~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~   56 (306)
T d1jwyb_          25 PQIVVVGSQSSGKSSVLENIVGRDFLPRGSGI   56 (306)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHTSCCCCC----
T ss_pred             CeEEEEeCCCCCHHHHHHHHhCCCCCCCCCCc
Confidence            37999999999999999999998766655543

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.29  E-value=9.8e-08  Score=82.69  Aligned_cols=22  Identities=18%  Similarity=0.445  Sum_probs=20.6

Q ss_pred             EeEeccCCCCcchhHHhhhcCc
Q 021210          220 AGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       220 i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      |+|+|.+|+|||||+|+|++..
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~   29 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSA   29 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEeCCCccHHHHHHHHHhhc
Confidence            9999999999999999999764

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.29  E-value=2.5e-07  Score=78.10  Aligned_cols=53  Identities=25%  Similarity=0.315  Sum_probs=38.0

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe----CCcEEEEeCCCcc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF----GKDLEFLDSPGII  273 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~----~~~~~liDTPGi~  273 (316)
                      +|+++|.+|||||||+|+|++.+...+.+..++++.  .+..    +..+.++||||..
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~~~d~~g~~   58 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSA--IYKVNNNRGNSLTLIDLPGHE   58 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEE--EEECSSTTCCEEEEEECCCCH
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcccCCeeEEEE--EEEEeeeeeeeeeeeeccccc
Confidence            489999999999999999998765544433333333  3333    2347899999974

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=98.28  E-value=9.9e-07  Score=78.49  Aligned_cols=89  Identities=11%  Similarity=-0.000  Sum_probs=71.7

Q ss_pred             CCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--
Q 021210           71 NGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--  146 (316)
Q Consensus        71 ~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--  146 (316)
                      .++|-...|++.+.+++.....|.-.-.+  +-++||| ..+..++...+.-+|.+|+|+|+..+.......+.+...  
T Consensus        40 ~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh-~dF~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~~  118 (267)
T d2dy1a2          40 TTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGY-GDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERL  118 (267)
T ss_dssp             CSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCS-GGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT
T ss_pred             ccccchHHHHHhCCeEEeecccccccccceeEEccCch-hhhhhhhhhhhcccCceEEEeeccCCccchhHHHHHhhhhc
Confidence            34666777888999999888766554443  7799999 789999999999999999999999988765555555443  


Q ss_pred             CCCEEEEEEccCCC
Q 021210          147 NRKRILVLNREDMI  160 (316)
Q Consensus       147 ~k~~IlVlNK~DLv  160 (316)
                      +.|.++++||+|..
T Consensus       119 ~~p~~i~iNk~D~~  132 (267)
T d2dy1a2         119 GLPRMVVVTKLDKG  132 (267)
T ss_dssp             TCCEEEEEECGGGC
T ss_pred             cccccccccccccc
Confidence            78999999999974

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=3.5e-07  Score=75.43  Aligned_cols=57  Identities=23%  Similarity=0.288  Sum_probs=39.0

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee--EEEEEeCC---cEEEEeCCCccc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGIIP  274 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~--~~~~~~~~---~~~liDTPGi~~  274 (316)
                      .+||+++|.+|||||||||+|.+... .....+.++..  ...+..+.   .+.++||||...
T Consensus         7 ~iKi~vvG~~~vGKTsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   68 (177)
T d1x3sa1           7 TLKILIIGESGVGKSSLLLRFTDDTF-DPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER   68 (177)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCC-CTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGG
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCC-CCccccceeecceeEEEEEeccccEEEEEECCCchh
Confidence            57899999999999999999997552 22222333333  33344432   478999999754

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.27  E-value=5.1e-07  Score=75.68  Aligned_cols=57  Identities=26%  Similarity=0.325  Sum_probs=39.4

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcc-cccCCCCCceeeEEEEEeC-C--cEEEEeCCCcc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKWVRFG-K--DLEFLDSPGII  273 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~-~~vs~~pgtT~~~~~~~~~-~--~~~liDTPGi~  273 (316)
                      -+||+|+|.+|||||||+|+|.+... ....+..+++.....+..+ .  .+.++||||--
T Consensus         6 ~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e   66 (194)
T d2bcgy1           6 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE   66 (194)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTT
T ss_pred             EEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCch
Confidence            36899999999999999999986542 2233444555554444432 2  46789999964

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.27  E-value=3.1e-07  Score=75.20  Aligned_cols=98  Identities=11%  Similarity=-0.055  Sum_probs=64.0

Q ss_pred             ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-HHHH----H-hCCCCEEEEEEccCCCChHh--HHHHHHHH
Q 021210          101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQ----W-LGNRKRILVLNREDMISMAD--RNAWATYF  172 (316)
Q Consensus       101 ~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-~i~~----~-l~~k~~IlVlNK~DLv~~~~--~~~~~~~~  172 (316)
                      -++||+ .++.......++.+|.+|+|+|..++.+..+. .+..    . ....++++|.||+|+....+  .++..+..
T Consensus        59 wDt~G~-e~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~  137 (169)
T d3raba_          59 WDTAGQ-ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLA  137 (169)
T ss_dssp             EEECCS-GGGHHHHHTTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred             EECCCc-hhhHHHHHHHHhcCCEEEEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHH
Confidence            456887 34444444568999999999999875433221 1111    1 12567888999999864422  12333344


Q ss_pred             HhcCceEEEeccccccchhhhHHHHHH
Q 021210          173 AKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       173 ~~~g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      ++.+.+++.+||++|.|++++.+.+.+
T Consensus       138 ~~~~~~~~e~Sak~g~gv~e~f~~l~~  164 (169)
T d3raba_         138 DHLGFEFFEASAKDNINVKQTFERLVD  164 (169)
T ss_dssp             HHHTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred             HHcCCEEEEecCCCCcCHHHHHHHHHH
Confidence            556788999999999999998765543

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.26  E-value=8.3e-07  Score=79.23  Aligned_cols=32  Identities=25%  Similarity=0.426  Sum_probs=27.6

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCC
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP  249 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~p  249 (316)
                      .+|+|+|.-++|||||||+|+|.....++..|
T Consensus        27 P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~   58 (299)
T d2akab1          27 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI   58 (299)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSC
T ss_pred             CeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCc
Confidence            37999999999999999999998866666655

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=98.26  E-value=4.7e-06  Score=67.77  Aligned_cols=83  Identities=18%  Similarity=0.204  Sum_probs=57.0

Q ss_pred             HhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCEEEEEEccCCCChHhHHHHH----HHHHhcC--ceEEEeccccccc
Q 021210          118 LKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWA----TYFAKQG--TKVIFSNGQLGMG  189 (316)
Q Consensus       118 i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~IlVlNK~DLv~~~~~~~~~----~~~~~~g--~~vi~iSa~~g~g  189 (316)
                      +...+.++.+.|+..+...........+  ...+.++++||+|+++..+.....    +.+...+  .+++++||++|.|
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~i~vSA~~g~G  175 (188)
T d1puia_          96 RQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQG  175 (188)
T ss_dssp             CTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBS
T ss_pred             hhheeEEEEeecccccchhHHHHHHHHhhhccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcEEEEeCCCCCC
Confidence            4555667777777766554444443332  367899999999999876544333    3333333  5689999999999


Q ss_pred             hhhhHHHHHHh
Q 021210          190 TMKLSRLAKAL  200 (316)
Q Consensus       190 i~~L~~~L~~l  200 (316)
                      +++|++.|.++
T Consensus       176 id~L~~~i~~~  186 (188)
T d1puia_         176 VDKLRQKLDTW  186 (188)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999887654

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=98.26  E-value=6.5e-07  Score=72.53  Aligned_cols=98  Identities=11%  Similarity=0.030  Sum_probs=64.6

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF  172 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~  172 (316)
                      +.++||+ .++.......+..+|.+++++|+.+......  ..+...+     .+.|+++|.||+|+.+.....+..+.+
T Consensus        50 ~~D~~G~-~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~  128 (165)
T d1ksha_          50 IWDVGGQ-KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEAL  128 (165)
T ss_dssp             EEEECCS-HHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHT
T ss_pred             eeecCcc-hhhhhHHHhhhhhhhcceeeeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCHHHHHHHH
Confidence            5567887 4455555677899999999999876433221  1222332     257999999999997543333322222


Q ss_pred             H--hc---CceEEEeccccccchhhhHHHHH
Q 021210          173 A--KQ---GTKVIFSNGQLGMGTMKLSRLAK  198 (316)
Q Consensus       173 ~--~~---g~~vi~iSa~~g~gi~~L~~~L~  198 (316)
                      .  ..   ...++.+||++|+|++++.+.|.
T Consensus       129 ~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~  159 (165)
T d1ksha_         129 ELDSIRSHHWRIQGCSAVTGEDLLPGIDWLL  159 (165)
T ss_dssp             TGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred             HhhhhhcCCCEEEEEECCCCCCHHHHHHHHH
Confidence            1  11   24678899999999999877653

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=9.9e-07  Score=72.11  Aligned_cols=100  Identities=8%  Similarity=-0.054  Sum_probs=64.5

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHh--CCCCEEEEEEccCCCChH--hHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL--GNRKRILVLNREDMISMA--DRNAWAT  170 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l--~~k~~IlVlNK~DLv~~~--~~~~~~~  170 (316)
                      +-+++|+ .++.......+..+|++++|+|..++.+....     .+.+..  ...|+++|.||+|+....  ..++..+
T Consensus        57 ~~d~~g~-~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~  135 (171)
T d2erya1          57 ILDTAGQ-EEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQ  135 (171)
T ss_dssp             EEECC-----CCHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHH
T ss_pred             ccccccc-ccccccccccccccceEEEeeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHH
Confidence            3445665 44555556778899999999998876433221     111221  257899999999986432  1223344


Q ss_pred             HHHhcCceEEEeccccccchhhhHHHHHHh
Q 021210          171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       171 ~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      +.++.+..++.+||++|.|++++...+.+.
T Consensus       136 ~~~~~~~~~~e~Sak~~~~i~e~f~~l~~~  165 (171)
T d2erya1         136 LARQLKVTYMEASAKIRMNVDQAFHELVRV  165 (171)
T ss_dssp             HHHHTTCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             HHHHcCCEEEEEcCCCCcCHHHHHHHHHHH
Confidence            455667888999999999999987766544

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.24  E-value=5.7e-07  Score=80.45  Aligned_cols=112  Identities=13%  Similarity=0.041  Sum_probs=74.5

Q ss_pred             CCCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC-
Q 021210           70 SNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG-  146 (316)
Q Consensus        70 ~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~-  146 (316)
                      +...|-...|++.++++......|.-...+  +-++||| ..+..++...+.-+|.+|+|+|+.++....-..+-+... 
T Consensus        43 ~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~-~dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~a~~  121 (276)
T d2bv3a2          43 AATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGH-VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEK  121 (276)
T ss_dssp             ------------CCCCCCCSEEEEEETTEEEEEECCCSS-SSCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHHHHHHT
T ss_pred             ceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCch-hhhHHHHHHHHHhhhheEEeccccCCcchhHHHHHHHHHH
Confidence            345666667889999999998877766655  7789999 789999999999999999999999988765555544433 


Q ss_pred             -CCCEEEEEEccCCCChHhHHHHHHHHH-hcCceEEEec
Q 021210          147 -NRKRILVLNREDMISMADRNAWATYFA-KQGTKVIFSN  183 (316)
Q Consensus       147 -~k~~IlVlNK~DLv~~~~~~~~~~~~~-~~g~~vi~iS  183 (316)
                       +.|+++++||+|....+- .+..+.++ +++..++++.
T Consensus       122 ~~lP~i~fINKmDr~~ad~-~~~l~ei~~~l~~~~vp~~  159 (276)
T d2bv3a2         122 YKVPRIAFANKMDKTGADL-WLVIRTMQERLGARPVVMQ  159 (276)
T ss_dssp             TTCCEEEEEECTTSTTCCH-HHHHHHHHHTTCCCEEECE
T ss_pred             cCCCEEEEEeccccccccc-chhHHHHHHHhCCCeEEEE
Confidence             789999999999864332 22333333 4555554443

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=98.24  E-value=3.2e-07  Score=75.88  Aligned_cols=101  Identities=12%  Similarity=0.021  Sum_probs=62.6

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHhC-----CCCEEEEEEccCCCChHhHHHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG-----NRKRILVLNREDMISMADRNAWATYF  172 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l~-----~k~~IlVlNK~DLv~~~~~~~~~~~~  172 (316)
                      +-++||+ .++.......+..+|++++|+|..+..+...  ..+...+.     +.|+++|.||+|+.+.....+..+.+
T Consensus        65 i~D~~g~-~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~  143 (182)
T d1moza_          65 VWDLGGQ-TSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKEL  143 (182)
T ss_dssp             EEEEC-----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHT
T ss_pred             EEecccc-cccchhHHhhhccceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCHHHHHHHH
Confidence            3345555 4444444456789999999999987654432  12233332     57999999999996532222332222


Q ss_pred             -----HhcCceEEEeccccccchhhhHHHHHHhh
Q 021210          173 -----AKQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (316)
Q Consensus       173 -----~~~g~~vi~iSa~~g~gi~~L~~~L~~l~  201 (316)
                           ...+..++.+||++|+|++++.+.|.+..
T Consensus       144 ~~~~~~~~~~~~~e~SA~~g~gv~e~~~~l~~~i  177 (182)
T d1moza_         144 NLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI  177 (182)
T ss_dssp             TTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHH
T ss_pred             HHHHHhhCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence                 12235688999999999998877665543

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=98.23  E-value=4.3e-07  Score=72.80  Aligned_cols=57  Identities=19%  Similarity=0.289  Sum_probs=38.7

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEeCCcEEEEeCCCccc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIP  274 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~~~~~~liDTPGi~~  274 (316)
                      .+||++||.+|||||||||++.+.....+.+..+.+.. .....+..+.+.|++|...
T Consensus         5 e~kI~ivG~~~vGKSSLi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   61 (169)
T d1upta_           5 EMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVE-TVTYKNLKFQVWDLGGLTS   61 (169)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEE-EEEETTEEEEEEEECCCGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCcceecccceeee-eeccCceEEEEeecccccc
Confidence            57899999999999999999998775544433332222 1112234567888888753

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=3.8e-07  Score=74.93  Aligned_cols=98  Identities=11%  Similarity=-0.044  Sum_probs=65.7

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--H---HHHHhCCCCEEEEEEccCCCChHhHHHHHHHHHh
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--L---MDQWLGNRKRILVLNREDMISMADRNAWATYFAK  174 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~---i~~~l~~k~~IlVlNK~DLv~~~~~~~~~~~~~~  174 (316)
                      +-+++|. ..+.......++.+|.+++|+|..++.+..+.  .   +.+...+.|+++|.||+||.......+..++..+
T Consensus        56 i~D~~g~-~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~  134 (170)
T d1i2ma_          56 VWDTAGQ-EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRK  134 (170)
T ss_dssp             EEECTTH-HHHSSCGGGGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHHCSCCEEEEEECCCCSCSCCTTTSHHHHSS
T ss_pred             ccccccc-cccceecchhcccccchhhccccccccccchhHHHHHHHhhccCCCceeeecchhhhhhhhhhhHHHHHHHH
Confidence            3345665 33333344567899999999999886544321  1   1122337899999999999765433333344455


Q ss_pred             cCceEEEeccccccchhhhHHHHH
Q 021210          175 QGTKVIFSNGQLGMGTMKLSRLAK  198 (316)
Q Consensus       175 ~g~~vi~iSa~~g~gi~~L~~~L~  198 (316)
                      .+..++.+||++|.|++++...|.
T Consensus       135 ~~~~~~e~Sak~~~~v~e~f~~l~  158 (170)
T d1i2ma_         135 KNLQYYDISAKSNYNFEKPFLWLA  158 (170)
T ss_dssp             CSSEEEEEBTTTTBTTTHHHHHHH
T ss_pred             cCCEEEEEeCCCCCCHHHHHHHHH
Confidence            667889999999999999875543

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.22  E-value=4e-07  Score=74.16  Aligned_cols=57  Identities=23%  Similarity=0.322  Sum_probs=35.2

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCccc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGIIP  274 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~~  274 (316)
                      ...||++||.+|||||||+|+|.+.....+.+..+.+...  +.. +..+...|++|...
T Consensus        12 k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~   69 (186)
T d1f6ba_          12 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEE--LTIAGMTFTTFDLGGHIQ   69 (186)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEE--EEETTEEEEEEEECC---
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcceecccccceeE--EEecccccccccccchhh
Confidence            3578999999999999999999988765555555555432  222 33466777777653

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=98.22  E-value=3.2e-07  Score=77.99  Aligned_cols=57  Identities=25%  Similarity=0.388  Sum_probs=41.4

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCc---------------ccccCCCCCceeeEEEEEe---CCcEEEEeCCCcc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRR---------------MCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGII  273 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~---------------~~~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~  273 (316)
                      .++|+++|..|+|||||+|+|++.-               ........|+|.+.....+   +..+.++||||-.
T Consensus         3 ~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~   77 (196)
T d1d2ea3           3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA   77 (196)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHH
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchH
Confidence            4789999999999999999998520               0111223588888654443   5679999999974

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=5e-07  Score=74.26  Aligned_cols=97  Identities=11%  Similarity=-0.013  Sum_probs=63.8

Q ss_pred             cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHh--CCCCEEEEEEccCCCChHh--HHHHHHHH
Q 021210          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL--GNRKRILVLNREDMISMAD--RNAWATYF  172 (316)
Q Consensus       102 ~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l--~~k~~IlVlNK~DLv~~~~--~~~~~~~~  172 (316)
                      +++|+ .++.......+..+|++|+|+|..++.+....     .+.+..  .+.|+++|.||+|+....+  .++..++.
T Consensus        60 d~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~  138 (173)
T d2fn4a1          60 DTAGQ-EEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFG  138 (173)
T ss_dssp             ECCCT-TTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHH
T ss_pred             ccccc-cccccccchhhccceeeeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHH
Confidence            34555 34444455678899999999999865433211     111111  2568999999999864321  22333444


Q ss_pred             HhcCceEEEeccccccchhhhHHHHHH
Q 021210          173 AKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       173 ~~~g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      .+.+..++.+||++|.|++++.+.+.+
T Consensus       139 ~~~~~~~~e~Sak~g~gv~e~f~~l~~  165 (173)
T d2fn4a1         139 ASHHVAYFEASAKLRLNVDEAFEQLVR  165 (173)
T ss_dssp             HHTTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred             HhcCCEEEEEeCCCCcCHHHHHHHHHH
Confidence            566788899999999999998766544

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=98.21  E-value=9.4e-07  Score=72.31  Aligned_cols=96  Identities=9%  Similarity=-0.076  Sum_probs=62.5

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHh--CCCCEEEEEEccCCCChHh--HHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL--GNRKRILVLNREDMISMAD--RNAWAT  170 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l--~~k~~IlVlNK~DLv~~~~--~~~~~~  170 (316)
                      +-+++|+ .++.......++.+|.+++|+|..+..+....     ++.+..  .+.|+++|.||+|+....+  .++..+
T Consensus        56 i~d~~g~-~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~  134 (168)
T d1u8za_          56 ILDTAGQ-EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKN  134 (168)
T ss_dssp             EEECCC----CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred             ccccccc-cchhhhhhhcccccceeEEEeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHH
Confidence            3345666 44555555678999999999999875433221     111211  2568999999999854321  233444


Q ss_pred             HHHhcCceEEEeccccccchhhhHHH
Q 021210          171 YFAKQGTKVIFSNGQLGMGTMKLSRL  196 (316)
Q Consensus       171 ~~~~~g~~vi~iSa~~g~gi~~L~~~  196 (316)
                      +.++.+..++.+||++|.|++++...
T Consensus       135 ~~~~~~~~~~e~Sak~g~gv~e~f~~  160 (168)
T d1u8za_         135 RADQWNVNYVETSAKTRANVDKVFFD  160 (168)
T ss_dssp             HHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred             HHHHcCCeEEEEcCCCCcCHHHHHHH
Confidence            55566788999999999999987654

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.21  E-value=9.5e-07  Score=71.73  Aligned_cols=59  Identities=27%  Similarity=0.343  Sum_probs=38.8

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCccc-ccCCCCCceeeEEEEEeCC---cEEEEeCCCcccC
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFGK---DLEFLDSPGIIPM  275 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~-~vs~~pgtT~~~~~~~~~~---~~~liDTPGi~~~  275 (316)
                      .+||+++|.+|||||||+|++.+.... ...+..+.+........+.   .+.++||+|-...
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~   64 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEF   64 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGT
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccch
Confidence            478999999999999999999865421 1222233333333333332   4689999998654

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=6.2e-07  Score=73.32  Aligned_cols=57  Identities=21%  Similarity=0.246  Sum_probs=37.2

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCC--ceeeEEEEEeCC---cEEEEeCCCcc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG--VTRVLKWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pg--tT~~~~~~~~~~---~~~liDTPGi~  273 (316)
                      ..||+++|.+|||||||+|++++.+.......+.  .+.....+....   .+.++||||-.
T Consensus         6 ~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e   67 (170)
T d2g6ba1           6 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE   67 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC-
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCch
Confidence            4689999999999999999998765322222232  333333333332   46799999964

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=6.6e-07  Score=73.05  Aligned_cols=98  Identities=12%  Similarity=0.018  Sum_probs=63.9

Q ss_pred             ccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HH---HHHHh---CCCCEEEEEEccCCCChHh--HHHHHHHH
Q 021210          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PL---MDQWL---GNRKRILVLNREDMISMAD--RNAWATYF  172 (316)
Q Consensus       103 ~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~---i~~~l---~~k~~IlVlNK~DLv~~~~--~~~~~~~~  172 (316)
                      ++|. .++.......+..+|++++|+|..++.+..+  ..   +.+..   .+.|+++|.||+|+....+  .++..++.
T Consensus        57 ~~g~-~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~  135 (171)
T d2erxa1          57 TTGS-HQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALA  135 (171)
T ss_dssp             CCSC-SSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHH
T ss_pred             cccc-ccccccccccccceeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHH
Confidence            4444 3344555567899999999999976543222  11   22221   2568999999999854322  12223334


Q ss_pred             HhcCceEEEeccccccchhhhHHHHHHhh
Q 021210          173 AKQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (316)
Q Consensus       173 ~~~g~~vi~iSa~~g~gi~~L~~~L~~l~  201 (316)
                      ++.+..++.+||++|.|++++.+.|.++.
T Consensus       136 ~~~~~~~~e~Sak~~~~v~e~f~~l~~~~  164 (171)
T d2erxa1         136 RTWKCAFMETSAKLNHNVKELFQELLNLE  164 (171)
T ss_dssp             HHHTCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred             HHcCCeEEEEcCCCCcCHHHHHHHHHHHH
Confidence            55677889999999999999877665543

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=98.19  E-value=4.4e-07  Score=74.96  Aligned_cols=58  Identities=21%  Similarity=0.256  Sum_probs=38.4

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEeCCcEEEEeCCCcccC
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPM  275 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~~~~~~liDTPGi~~~  275 (316)
                      .+||+++|.+|||||||+|+|.+.......+..|.+..... ..+-.+.++||||....
T Consensus        17 ~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~~t~~~~~~~~~-~~~~~~~i~D~~g~~~~   74 (182)
T d1moza_          17 ELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLS-YKNLKLNVWDLGGQTSI   74 (182)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEE-ETTEEEEEEEEC----C
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCccccccceEEEEEe-eCCEEEEEEeccccccc
Confidence            58999999999999999999987765555544444332211 11335789999998643

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.19  E-value=8.6e-07  Score=73.38  Aligned_cols=57  Identities=23%  Similarity=0.369  Sum_probs=37.9

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccc-cCCCCCceeeEEEEEeC-C--cEEEEeCCCccc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFG-K--DLEFLDSPGIIP  274 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~-vs~~pgtT~~~~~~~~~-~--~~~liDTPGi~~  274 (316)
                      +||+++|.+|||||||+|++.+.+... ..+..|.+.....+... .  .+.++||||...
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~   63 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER   63 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGG
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCccc
Confidence            589999999999999999999765221 12223444433333332 2  467899999753

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=98.18  E-value=6.1e-07  Score=73.16  Aligned_cols=60  Identities=20%  Similarity=0.241  Sum_probs=42.3

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEeCCcEEEEeCCCcccCCC
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRI  277 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~~~~~~liDTPGi~~~~~  277 (316)
                      ..||+++|.+|||||||+|+|.+.+...+....+++.... ...+..+.+.|++|-...+.
T Consensus        15 ~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~   74 (177)
T d1zj6a1          15 EHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEI-VINNTRFLMWDIGGQESLRS   74 (177)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEE-EETTEEEEEEECCC----CG
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCccccccceeEEEE-eecceEEEEecccccccccc
Confidence            4689999999999999999999988766666666554332 22345678999998765433

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=98.18  E-value=4.6e-07  Score=76.23  Aligned_cols=38  Identities=29%  Similarity=0.358  Sum_probs=27.0

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCc--ccccCCCCCceee
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRR--MCPAAPRPGVTRV  254 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~--~~~vs~~pgtT~~  254 (316)
                      .++|+++|..|+|||||+|+|++..  ........|.|.+
T Consensus         5 ~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~   44 (195)
T d1kk1a3           5 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIK   44 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSC
T ss_pred             cEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccc
Confidence            4789999999999999999998742  2222334455554

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=1.2e-06  Score=71.99  Aligned_cols=57  Identities=19%  Similarity=0.324  Sum_probs=37.8

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCccccc-CCCCCceeeEEEEEeCC---cEEEEeCCCccc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFGK---DLEFLDSPGIIP  274 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~v-s~~pgtT~~~~~~~~~~---~~~liDTPGi~~  274 (316)
                      +||+++|.+|||||||+|++.+...... .+..+++.....+..+.   .+.+.||||--.
T Consensus         5 ~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~   65 (175)
T d2f9la1           5 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER   65 (175)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGG
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHH
Confidence            5899999999999999999987653222 22223333333344443   467999999643

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=5.9e-07  Score=73.53  Aligned_cols=99  Identities=15%  Similarity=0.077  Sum_probs=63.8

Q ss_pred             ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHH---HHhC-CCCEEEEEEccCCCChHh--HHHHHHHH
Q 021210          101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMD---QWLG-NRKRILVLNREDMISMAD--RNAWATYF  172 (316)
Q Consensus       101 ~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~---~~l~-~k~~IlVlNK~DLv~~~~--~~~~~~~~  172 (316)
                      -++||+ .++.......++.+|.+++|+|..++.+..+.  .+.   +... ..|+++|.||+|+.+..+  .++..++.
T Consensus        59 ~Dt~G~-e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~  137 (171)
T d2ew1a1          59 WDTAGQ-ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFS  137 (171)
T ss_dssp             EEECCS-GGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHH
T ss_pred             EECCCc-hhhHHHHHHHHhccceEEEeeecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHH
Confidence            356886 44544445668999999999998765432211  111   1112 468899999999865422  22333344


Q ss_pred             HhcCceEEEeccccccchhhhH-HHHHHh
Q 021210          173 AKQGTKVIFSNGQLGMGTMKLS-RLAKAL  200 (316)
Q Consensus       173 ~~~g~~vi~iSa~~g~gi~~L~-~~L~~l  200 (316)
                      +..+..++.+||++|.|++++. +++.++
T Consensus       138 ~~~~~~~~~~SAktg~gV~e~f~~l~~~l  166 (171)
T d2ew1a1         138 EAQDMYYLETSAKESDNVEKLFLDLACRL  166 (171)
T ss_dssp             HHHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HhCCCEEEEEccCCCCCHHHHHHHHHHHH
Confidence            4566788999999999999974 344444

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=1.1e-06  Score=72.08  Aligned_cols=56  Identities=21%  Similarity=0.398  Sum_probs=36.9

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCC--CceeeEEEEEeCC---cEEEEeCCCcc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP--GVTRVLKWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~p--gtT~~~~~~~~~~---~~~liDTPGi~  273 (316)
                      .+||+++|.+|||||||+|++.+.+. .....|  +.+.....+..+.   .+.++||||-.
T Consensus         5 ~~KI~lvG~~~vGKTsll~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~   65 (174)
T d2bmea1           5 LFKFLVIGNAGTGKSCLLHQFIEKKF-KDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE   65 (174)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSC-CTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCC-CcccccccccceeeEEEEecCcceeEEEEECCCch
Confidence            36899999999999999999986553 222223  2332222333322   47799999954

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.15  E-value=1.4e-06  Score=70.57  Aligned_cols=97  Identities=14%  Similarity=0.092  Sum_probs=59.7

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHH---HHh--CCCCEEEEEEccCCCChHh--HHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMD---QWL--GNRKRILVLNREDMISMAD--RNAWAT  170 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~---~~l--~~k~~IlVlNK~DLv~~~~--~~~~~~  170 (316)
                      +.+.+|............+..+|++|+|+|..++.+..+.  .+.   +..  .+.|+++|.||+||....+  .++..+
T Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~  134 (165)
T d1z06a1          55 LWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQK  134 (165)
T ss_dssp             EEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             EEeccCchhhccccceeeecCCCceEEEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHH
Confidence            4455666333333345678999999999999876543321  122   212  2568999999999865421  222334


Q ss_pred             HHHhcCceEEEeccccccchhhhHHH
Q 021210          171 YFAKQGTKVIFSNGQLGMGTMKLSRL  196 (316)
Q Consensus       171 ~~~~~g~~vi~iSa~~g~gi~~L~~~  196 (316)
                      +.++.+.+++.+||++|.+.+.+.+.
T Consensus       135 ~~~~~~~~~~e~SAkt~~~~~~V~e~  160 (165)
T d1z06a1         135 FADTHSMPLFETSAKNPNDNDHVEAI  160 (165)
T ss_dssp             HHHHTTCCEEECCSSSGGGGSCHHHH
T ss_pred             HHHHCCCEEEEEecccCCcCcCHHHH
Confidence            45566778899999876543333333

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=98.14  E-value=9.6e-07  Score=72.33  Aligned_cols=99  Identities=12%  Similarity=0.012  Sum_probs=63.9

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHhC-----CCCEEEEEEccCCCChHhHHHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG-----NRKRILVLNREDMISMADRNAWATYF  172 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l~-----~k~~IlVlNK~DLv~~~~~~~~~~~~  172 (316)
                      +-++||. ..........+..+|.+++|+|+.+..+..+  ..+...+.     ..|+++|.||+|+.+.....+..+.+
T Consensus        60 i~D~~g~-~~~~~~~~~~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~  138 (173)
T d1e0sa_          60 VWDVGGQ-DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKL  138 (173)
T ss_dssp             EEEESCC-GGGHHHHGGGTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHT
T ss_pred             EecCCCc-chhhhHHHhhhcccceEEEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHH
Confidence            5567887 4445555567899999999999875432221  12223232     57999999999996533222222222


Q ss_pred             -----HhcCceEEEeccccccchhhhHHHHHH
Q 021210          173 -----AKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       173 -----~~~g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                           ...+..++.+||++|+|++++.+.|.+
T Consensus       139 ~~~~~~~~~~~~~e~SA~tg~gv~e~~~~l~~  170 (173)
T d1e0sa_         139 GLTRIRDRNWYVQPSCATSGDGLYEGLTWLTS  170 (173)
T ss_dssp             TGGGCCSSCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred             HHHHHHhCCCEEEEeeCCCCcCHHHHHHHHHH
Confidence                 112345788999999999988777643

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=1.2e-06  Score=70.98  Aligned_cols=99  Identities=14%  Similarity=0.063  Sum_probs=66.3

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHH---Hh-CCCCEEEEEEccCCCChHh--HHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQ---WL-GNRKRILVLNREDMISMAD--RNAWATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~---~l-~~k~~IlVlNK~DLv~~~~--~~~~~~~  171 (316)
                      +-+++|+ .++.......+..+|.+++|+|..++.+..+  ..+..   .. .+.|+++|.||+|+.+..+  .++..++
T Consensus        53 i~d~~g~-~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~  131 (164)
T d1yzqa1          53 LWDTAGQ-ERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERK  131 (164)
T ss_dssp             EEEECCS-GGGGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred             ecccCCc-chhccchHHHhhccceEEEeeccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHH
Confidence            3344555 4455555677999999999999977643322  11111   11 2568899999999864322  2334445


Q ss_pred             HHhcCceEEEeccccccchhhhHHHHHH
Q 021210          172 FAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      .++.+..++.+||++|.|++++.+.|.+
T Consensus       132 ~~~~~~~~~e~SAk~g~~v~e~f~~i~~  159 (164)
T d1yzqa1         132 AKELNVMFIETSAKAGYNVKQLFRRVAA  159 (164)
T ss_dssp             HHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHcCCEEEEecCCCCcCHHHHHHHHHH
Confidence            5566778899999999999988776544

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=8.4e-07  Score=72.67  Aligned_cols=96  Identities=9%  Similarity=-0.041  Sum_probs=63.9

Q ss_pred             ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHH---HHh-CCCCEEEEEEccCCCChHh--HHHHHHHH
Q 021210          101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMD---QWL-GNRKRILVLNREDMISMAD--RNAWATYF  172 (316)
Q Consensus       101 ~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~---~~l-~~k~~IlVlNK~DLv~~~~--~~~~~~~~  172 (316)
                      -++||+ .++.......+..+|++++|+|..++.+..+.  .+.   ... .+.|+++|.||+|+....+  .....++.
T Consensus        59 ~D~~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~  137 (174)
T d2bmea1          59 WDTAGQ-ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFA  137 (174)
T ss_dssp             EEECCS-GGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHH
T ss_pred             EECCCc-hhhhhhHHHHhhhCCEEEEEEecccchhHHHHhhhhcccccccCCceEEEEEEecccccchhchhhhHHHHHH
Confidence            356776 44555556678999999999999865432221  111   112 2579999999999864332  12223344


Q ss_pred             HhcCceEEEeccccccchhhhHHHH
Q 021210          173 AKQGTKVIFSNGQLGMGTMKLSRLA  197 (316)
Q Consensus       173 ~~~g~~vi~iSa~~g~gi~~L~~~L  197 (316)
                      .+.+..++.+||++|.|++++...+
T Consensus       138 ~~~~~~~~e~Sak~~~gi~e~f~~l  162 (174)
T d2bmea1         138 QENELMFLETSALTGENVEEAFVQC  162 (174)
T ss_dssp             HHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             HhCCCEEEEeeCCCCcCHHHHHHHH
Confidence            4566788999999999999986544

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=98.13  E-value=5.3e-07  Score=73.97  Aligned_cols=57  Identities=16%  Similarity=0.197  Sum_probs=37.8

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEeCCcEEEEeCCCccc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIP  274 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~~~~~~liDTPGi~~  274 (316)
                      .+||+++|.+|||||||||+|.+.......+..|.+... .....-.+.++||||...
T Consensus        12 ~~kIvlvG~~~vGKTSli~rl~~~~~~~~~~t~~~~~~~-~~~~~~~~~i~D~~g~~~   68 (173)
T d1e0sa_          12 EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVET-VTYKNVKFNVWDVGGQDK   68 (173)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTTCCCCEEEEEETTEEEEE-EEETTEEEEEEEESCCGG
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCccceeeeeEEE-eeccceeeEEecCCCcch
Confidence            478999999999999999999876543332222222211 111133578999999753

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=1.5e-06  Score=70.57  Aligned_cols=97  Identities=13%  Similarity=0.061  Sum_probs=63.4

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-H-HHHH---h-CCCCEEEEEEccCCCChHh--HHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L-MDQW---L-GNRKRILVLNREDMISMAD--RNAWATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-~-i~~~---l-~~k~~IlVlNK~DLv~~~~--~~~~~~~  171 (316)
                      +-++||+ .++.......++.+|++++|+|..+..+.... . +...   . ...|++++.||+|+.....  .++..+.
T Consensus        57 i~D~~g~-~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~  135 (166)
T d1z0fa1          57 IWDTAGQ-ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQF  135 (166)
T ss_dssp             EEECTTG-GGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred             EeccCCc-hhHHHHHHHHhcCCcEEEEEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHHHHHHHH
Confidence            3456676 44444555678999999999998765332211 1 1111   1 1467899999999854332  2334444


Q ss_pred             HHhcCceEEEeccccccchhhhHHHH
Q 021210          172 FAKQGTKVIFSNGQLGMGTMKLSRLA  197 (316)
Q Consensus       172 ~~~~g~~vi~iSa~~g~gi~~L~~~L  197 (316)
                      .++.+.+++.+||++|.|++++...+
T Consensus       136 ~~~~~~~~~e~Saktg~~v~e~f~~i  161 (166)
T d1z0fa1         136 AEENGLLFLEASAKTGENVEDAFLEA  161 (166)
T ss_dssp             HHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             HHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            55667888999999999999886543

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=1.9e-06  Score=70.05  Aligned_cols=56  Identities=20%  Similarity=0.291  Sum_probs=38.2

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee--EEEEEeCC---cEEEEeCCCccc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGIIP  274 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~--~~~~~~~~---~~~liDTPGi~~  274 (316)
                      +||+++|.+|||||||+|++.+.... ....|.++.+  ...+..+.   .+.++||||-..
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~   65 (166)
T d1z0fa1           5 FKYIIIGDMGVGKSCLLHQFTEKKFM-ADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER   65 (166)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCC-SSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGG
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCC-CcccccccccceeEEEEECCEEEEEEEeccCCchh
Confidence            58999999999999999999976532 2223333333  33334433   477899999643

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.11  E-value=1.4e-06  Score=71.24  Aligned_cols=97  Identities=8%  Similarity=-0.061  Sum_probs=57.5

Q ss_pred             ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHh-----CCCCEEEEEEccCCCChHh---HHH
Q 021210          101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL-----GNRKRILVLNREDMISMAD---RNA  167 (316)
Q Consensus       101 ~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l-----~~k~~IlVlNK~DLv~~~~---~~~  167 (316)
                      -+++|+ .+...........+|.+++|+|..++.+....     ++....     .+.|+++|.||+|+.+...   .++
T Consensus        57 ~d~~g~-~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~  135 (175)
T d1ky3a_          57 WDTAGQ-ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKS  135 (175)
T ss_dssp             ECCC-----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHH
T ss_pred             eccCCc-hhhhhHHHHHhhccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHH
Confidence            345666 44455555668999999999999876532211     122221     1468999999999875422   122


Q ss_pred             HHHHHHhcC-ceEEEeccccccchhhhHHHHH
Q 021210          168 WATYFAKQG-TKVIFSNGQLGMGTMKLSRLAK  198 (316)
Q Consensus       168 ~~~~~~~~g-~~vi~iSa~~g~gi~~L~~~L~  198 (316)
                      ..++..+.+ ..++.+||++|.|++++...+.
T Consensus       136 ~~~~~~~~~~~~~~e~SA~~g~gv~e~f~~l~  167 (175)
T d1ky3a_         136 AQELAKSLGDIPLFLTSAKNAINVDTAFEEIA  167 (175)
T ss_dssp             HHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHH
T ss_pred             HHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHH
Confidence            233334444 6788999999999999866553

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=98.11  E-value=1.8e-06  Score=70.07  Aligned_cols=54  Identities=17%  Similarity=0.251  Sum_probs=36.6

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEe-CCcEEEEeCCCcc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRF-GKDLEFLDSPGII  273 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~-~~~~~liDTPGi~  273 (316)
                      .+||+++|.+|||||||+|+|.+... .....|  |.+.  ..+.. +..+.++||||-.
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~-~~~~~~--T~~~~~~~~~~~~~~~~i~D~~G~~   58 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQF-NEDMIP--TVGFNMRKITKGNVTIKLWDIGGQP   58 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCC-CCSCCC--CCSEEEEEEEETTEEEEEEEECCSH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCC-CCcccc--cceeeeeeeeeeeEEEEEeeccccc
Confidence            36899999999999999999987653 222223  3332  22222 3357899999954

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=9.2e-07  Score=72.69  Aligned_cols=96  Identities=11%  Similarity=0.038  Sum_probs=63.2

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHH---HHh-CCCCEEEEEEccCCCChH--hHHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMD---QWL-GNRKRILVLNREDMISMA--DRNAWATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~---~~l-~~k~~IlVlNK~DLv~~~--~~~~~~~~  171 (316)
                      +-++||+ .++.......+..+|++|+|+|..++.+....  .+.   +.. .+.|+++|.||+|+.+..  ..+.....
T Consensus        57 i~d~~g~-e~~~~~~~~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~  135 (175)
T d2f9la1          57 IWDTAGQ-ERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAF  135 (175)
T ss_dssp             EEECSSG-GGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred             ecccCCc-HHHHHHHHHHhhccCeEEEEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHHHHh
Confidence            4456776 34444455668999999999999876432221  111   112 146899999999997542  22223344


Q ss_pred             HHhcCceEEEeccccccchhhhHHH
Q 021210          172 FAKQGTKVIFSNGQLGMGTMKLSRL  196 (316)
Q Consensus       172 ~~~~g~~vi~iSa~~g~gi~~L~~~  196 (316)
                      ....+..++.+||++|.|++++.+.
T Consensus       136 ~~~~~~~~~e~Sa~~g~~i~e~f~~  160 (175)
T d2f9la1         136 AEKNNLSFIETSALDSTNVEEAFKN  160 (175)
T ss_dssp             HHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             hcccCceEEEEecCCCcCHHHHHHH
Confidence            4456678899999999999988544

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.11  E-value=1.4e-06  Score=71.25  Aligned_cols=98  Identities=16%  Similarity=0.036  Sum_probs=64.3

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHh--CCCCEEEEEEccCCCChHh--HHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWL--GNRKRILVLNREDMISMAD--RNAWAT  170 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l--~~k~~IlVlNK~DLv~~~~--~~~~~~  170 (316)
                      +-+++|+ .++.......+..+|++++|+|..++.+..+     ..+.+..  ...|+++|.||+|+....+  .++..+
T Consensus        56 i~d~~g~-~~~~~~~~~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~  134 (169)
T d1x1ra1          56 VLDTAGQ-EEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKE  134 (169)
T ss_dssp             EEECCSC-GGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHH
T ss_pred             ccccccc-cccccchhhhhhhccEEEEecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHH
Confidence            3345565 3333344567889999999999987543322     1122222  2578999999999875432  233444


Q ss_pred             HHHhcCceEEEecccccc-chhhhHHHHH
Q 021210          171 YFAKQGTKVIFSNGQLGM-GTMKLSRLAK  198 (316)
Q Consensus       171 ~~~~~g~~vi~iSa~~g~-gi~~L~~~L~  198 (316)
                      +..+.+..++.+||+++. |++++...+.
T Consensus       135 ~~~~~~~~~~e~Sak~~~~nV~~~F~~l~  163 (169)
T d1x1ra1         135 MATKYNIPYIETSAKDPPLNVDKTFHDLV  163 (169)
T ss_dssp             HHHHHTCCEEEEBCSSSCBSHHHHHHHHH
T ss_pred             HHHHcCCEEEEEcCCCCCcCHHHHHHHHH
Confidence            555667889999999875 9998766543

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=3.5e-06  Score=68.35  Aligned_cols=95  Identities=11%  Similarity=-0.028  Sum_probs=62.2

Q ss_pred             cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHh--CCCCEEEEEEccCCCChHh-HHHHHHHHH
Q 021210          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL--GNRKRILVLNREDMISMAD-RNAWATYFA  173 (316)
Q Consensus       102 ~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l--~~k~~IlVlNK~DLv~~~~-~~~~~~~~~  173 (316)
                      +++|. ..+.......+..+|++++|+|..++.+..+.     .+.+..  .+.|+++|.||+|+..... .++..++.+
T Consensus        57 d~~~~-~~~~~~~~~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~  135 (166)
T d1ctqa_          57 DTAGQ-EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLAR  135 (166)
T ss_dssp             EECCC-GGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSCHHHHHHHHH
T ss_pred             eccCc-cccccchhhhhhcccccceeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccccccHHHHHHHHH
Confidence            34554 33444455678999999999999865433221     112222  2468999999999865432 222333445


Q ss_pred             hcCceEEEeccccccchhhhHHHH
Q 021210          174 KQGTKVIFSNGQLGMGTMKLSRLA  197 (316)
Q Consensus       174 ~~g~~vi~iSa~~g~gi~~L~~~L  197 (316)
                      ..+..++.+||++|.|++++...+
T Consensus       136 ~~~~~~~e~Sak~g~gi~e~f~~i  159 (166)
T d1ctqa_         136 SYGIPYIETSAKTRQGVEDAFYTL  159 (166)
T ss_dssp             HHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             HhCCeEEEEcCCCCcCHHHHHHHH
Confidence            567789999999999999986554

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.07  E-value=1.4e-06  Score=71.15  Aligned_cols=56  Identities=25%  Similarity=0.383  Sum_probs=33.3

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccc-cCCCCCceeeEEEEEe-C---CcEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRF-G---KDLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~-vs~~pgtT~~~~~~~~-~---~~~~liDTPGi~  273 (316)
                      +||+++|.+|||||||+|++.+..... ..+..+.+........ +   ..+.+.||||-.
T Consensus         3 ~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~   63 (175)
T d1ky3a_           3 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE   63 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC---
T ss_pred             EEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCch
Confidence            689999999999999999998755322 2223333332222222 1   136789999963

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=1.5e-06  Score=70.90  Aligned_cols=55  Identities=24%  Similarity=0.166  Sum_probs=31.1

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEeCC---cEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~~~---~~~liDTPGi~  273 (316)
                      .||+++|.+|||||||+|++.+.......+..+.+.. ..+..+.   .+.++||||-.
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~l~i~D~~g~e   59 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQD   59 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC---------CEEEE-EEEEETTEEEEEEEEECC---
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCCcCCeeeeeec-ceeeccccccceeeeeccccc
Confidence            3799999999999999999987654332222222222 1233332   46789999964

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.05  E-value=2.6e-06  Score=69.36  Aligned_cols=58  Identities=22%  Similarity=0.405  Sum_probs=39.0

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccc-cCCCCCceeeEEEEEeCC---cEEEEeCCCccc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGIIP  274 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~-vs~~pgtT~~~~~~~~~~---~~~liDTPGi~~  274 (316)
                      .+||+++|.+|||||||++++.+..... ..+.+|.......+..+.   .+.+.||+|...
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~   64 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER   64 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchh
Confidence            4789999999999999999998765322 222333322333333332   478999999753

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.04  E-value=8.6e-07  Score=72.73  Aligned_cols=55  Identities=15%  Similarity=0.260  Sum_probs=21.3

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee--EEEEEeCC---cEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~--~~~~~~~~---~~~liDTPGi~  273 (316)
                      .||+++|.+|||||||+++|.+... .....|..+.+  ...+..+.   .+.++||||-.
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e   66 (173)
T d2fu5c1           7 FKLLLIGDSGVGKTCVLFRFSEDAF-NSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE   66 (173)
T ss_dssp             EEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC----
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCC-CCccCccccceEEEEEEEECCEEEEEEEEECCCch
Confidence            6899999999999999999986542 22222222222  33344433   36789999964

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=4.1e-06  Score=68.56  Aligned_cols=57  Identities=21%  Similarity=0.246  Sum_probs=39.0

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcccC
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIPM  275 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~~~  275 (316)
                      .+||+++|.+|||||||||++.+...  ....+.|+.+.  ..+..+.   .+.++||+|....
T Consensus         6 ~~Kv~lvG~~~vGKTsLi~r~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~   67 (173)
T d2fn4a1           6 THKLVVVGGGGVGKSALTIQFIQSYF--VSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEF   67 (173)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSSC--CSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTT
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCC--CcccccccccceeeEeccCCeeeeeecccccccccc
Confidence            47899999999999999999986542  22333344433  2233332   3678999998754

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=2.3e-06  Score=70.24  Aligned_cols=99  Identities=15%  Similarity=0.089  Sum_probs=62.4

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc------HHHHHHhCCCCEEEEEEccCCCChHh---------
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH------PLMDQWLGNRKRILVLNREDMISMAD---------  164 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~------~~i~~~l~~k~~IlVlNK~DLv~~~~---------  164 (316)
                      +-+++|+ ..+.......+..+|.+|+|+|..++.+..+      ..+.....+.|+++|.||+|+.+...         
T Consensus        54 i~D~~g~-~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~  132 (177)
T d1kmqa_          54 LWDTAGL-EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMK  132 (177)
T ss_dssp             EEEECCS-GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTT
T ss_pred             ccccCcc-chhcccchhhcccchhhhhhcccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhh
Confidence            3345665 3344444456889999999999986543221      11122223679999999999975322         


Q ss_pred             -----HHHHHHHHHhcC-ceEEEeccccccchhhhHHHHHH
Q 021210          165 -----RNAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       165 -----~~~~~~~~~~~g-~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                           .++..+..++.+ ..++.+||++|.|++++.+.+.+
T Consensus       133 ~~~v~~~e~~~~a~~~~~~~~~E~SAkt~~gi~e~F~~i~~  173 (177)
T d1kmqa_         133 QEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR  173 (177)
T ss_dssp             CCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHH
Confidence                 112223333444 46888999999999998766543

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.00  E-value=3.6e-06  Score=68.32  Aligned_cols=58  Identities=24%  Similarity=0.445  Sum_probs=37.6

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCccccc-CCCCCceeeEEEEEeCC---cEEEEeCCCccc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFGK---DLEFLDSPGIIP  274 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~v-s~~pgtT~~~~~~~~~~---~~~liDTPGi~~  274 (316)
                      .+||+++|.+|||||||+|+|.+...... .+..+.+........+.   .+.+.||+|-..
T Consensus         4 ~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~   65 (167)
T d1z0ja1           4 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLER   65 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchh
Confidence            47899999999999999999987653221 11122333323333333   356899999754

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=2.9e-06  Score=68.87  Aligned_cols=94  Identities=14%  Similarity=-0.061  Sum_probs=59.7

Q ss_pred             ccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-H----HHHHh--CCCCEEEEEEccCCCChHh--HHHHHHHHH
Q 021210          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L----MDQWL--GNRKRILVLNREDMISMAD--RNAWATYFA  173 (316)
Q Consensus       103 ~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-~----i~~~l--~~k~~IlVlNK~DLv~~~~--~~~~~~~~~  173 (316)
                      ++|. ..+..........+|++++|+|..+..+..+. .    +....  .+.|+++|.||+|+.....  .++...+.+
T Consensus        58 ~~g~-~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~  136 (167)
T d1kaoa_          58 TAGT-EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAE  136 (167)
T ss_dssp             CCCT-TCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH
T ss_pred             CCCc-cccccchHHHhhcccceeeeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHH
Confidence            3443 33444455678999999999998765433221 1    11111  2568999999999864321  122223344


Q ss_pred             hcCceEEEeccccccchhhhHHHH
Q 021210          174 KQGTKVIFSNGQLGMGTMKLSRLA  197 (316)
Q Consensus       174 ~~g~~vi~iSa~~g~gi~~L~~~L  197 (316)
                      +.+..++.+||++|.|++++.+.+
T Consensus       137 ~~~~~~~e~Sak~g~~i~e~f~~i  160 (167)
T d1kaoa_         137 EWGCPFMETSAKSKTMVDELFAEI  160 (167)
T ss_dssp             HHTSCEEEECTTCHHHHHHHHHHH
T ss_pred             HcCCeEEEECCCCCcCHHHHHHHH
Confidence            556788999999999999876543

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=2.3e-06  Score=70.00  Aligned_cols=57  Identities=23%  Similarity=0.337  Sum_probs=36.5

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee--EEEEEeC---CcEEEEeCCCcccC
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFG---KDLEFLDSPGIIPM  275 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~--~~~~~~~---~~~~liDTPGi~~~  275 (316)
                      .||+++|.+|||||||||++.+.+... ...|+++..  .......   ..+.++||+|-...
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~   65 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESF   65 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC------CCSSEEEEEEEETTEEEEEEEECCTTGGGT
T ss_pred             EEEEEECCCCcCHHHHHHHHhcCCCCC-CcccceeeccceeeeeeeeeEEEEEeecccCccch
Confidence            579999999999999999998765322 223333222  2222232   24689999998654

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=2.6e-06  Score=69.44  Aligned_cols=95  Identities=12%  Similarity=0.006  Sum_probs=61.1

Q ss_pred             cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHhC-CCCEEEEEEccCCCChHh--HHHHHHHHH
Q 021210          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG-NRKRILVLNREDMISMAD--RNAWATYFA  173 (316)
Q Consensus       102 ~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l~-~k~~IlVlNK~DLv~~~~--~~~~~~~~~  173 (316)
                      +++|+ .++.......+..+|.+++|+|..+..+..+.     .+.+... +.|+++|.||+|+....+  .+...+...
T Consensus        61 d~~g~-~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~  139 (170)
T d1r2qa_          61 DTAGQ-ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYAD  139 (170)
T ss_dssp             EECCS-GGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH
T ss_pred             cCCCc-hhhhhhHHHHhhCcceEEEEeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccccccHHHHHHHHH
Confidence            34555 33444444568999999999998765432211     1111122 568899999999864421  222333344


Q ss_pred             hcCceEEEeccccccchhhhHHHH
Q 021210          174 KQGTKVIFSNGQLGMGTMKLSRLA  197 (316)
Q Consensus       174 ~~g~~vi~iSa~~g~gi~~L~~~L  197 (316)
                      ..+..++.+||++|.|++++...|
T Consensus       140 ~~~~~~~e~SAk~g~~V~e~f~~l  163 (170)
T d1r2qa_         140 DNSLLFMETSAKTSMNVNEIFMAI  163 (170)
T ss_dssp             HTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             hcCCEEEEeeCCCCCCHHHHHHHH
Confidence            566789999999999999887654

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=5.7e-06  Score=67.05  Aligned_cols=55  Identities=22%  Similarity=0.278  Sum_probs=36.2

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~  273 (316)
                      ..||+++|.+|||||||+|++.+....  .....|..+.  .....+.   .+.++||+|-.
T Consensus         3 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~   62 (167)
T d1kaoa_           3 EYKVVVLGSGGVGKSALTVQFVTGTFI--EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTE   62 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCTT
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCC--CccCCceeeeeeeeeecCcceEeeccccCCCcc
Confidence            468999999999999999999976422  2222222222  2223332   47789999965

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.96  E-value=2.5e-06  Score=69.38  Aligned_cols=92  Identities=10%  Similarity=0.027  Sum_probs=60.6

Q ss_pred             ccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHH-------h-CCCCEEEEEEccCCCChHh--HHHHHHHH
Q 021210          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW-------L-GNRKRILVLNREDMISMAD--RNAWATYF  172 (316)
Q Consensus       103 ~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~-------l-~~k~~IlVlNK~DLv~~~~--~~~~~~~~  172 (316)
                      ++|+ .++.......+..+|.+|+|+|..++.+..+  +..+       . ...|+++|.||+|+.+...  .++..++.
T Consensus        60 ~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~  136 (167)
T d1z0ja1          60 TAGL-ERFRALAPMYYRGSAAAIIVYDITKEETFST--LKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYA  136 (167)
T ss_dssp             ECCS-GGGGGGTHHHHTTCSEEEEEEETTCHHHHHH--HHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred             cCCc-hhhhHHHHHHHhhccceEEEeeechhhhhhh--HHHhhhhhhhccCCcceEEEecccchhccccchhHHHHHHHH
Confidence            3444 3344444566889999999999876533322  2111       1 2678999999999964321  22333444


Q ss_pred             HhcCceEEEeccccccchhhhHHHH
Q 021210          173 AKQGTKVIFSNGQLGMGTMKLSRLA  197 (316)
Q Consensus       173 ~~~g~~vi~iSa~~g~gi~~L~~~L  197 (316)
                      .+.+..++.+||++|.|++++...+
T Consensus       137 ~~~~~~~~e~SAk~~~nV~e~f~~l  161 (167)
T d1z0ja1         137 DSIHAIFVETSAKNAININELFIEI  161 (167)
T ss_dssp             HHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             HHcCCEEEEEecCCCCCHHHHHHHH
Confidence            5567888999999999999876544

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=5.3e-06  Score=67.77  Aligned_cols=56  Identities=25%  Similarity=0.313  Sum_probs=35.7

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccc-cCCCCCceeeEEEEEeCC---cEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~-vs~~pgtT~~~~~~~~~~---~~~liDTPGi~  273 (316)
                      .||+++|.+|||||||+|++...+... ..+..+.+........+.   .+.++||+|..
T Consensus         7 ~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~   66 (174)
T d1wmsa_           7 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE   66 (174)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCG
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcc
Confidence            489999999999999999998654221 122223333333333333   35799999964

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=97.93  E-value=1.1e-05  Score=65.44  Aligned_cols=92  Identities=10%  Similarity=0.025  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHH--HHH-----hCCCCEEEEEEccCCCChHhHHHHHHHHHh-----c
Q 021210          108 AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLM--DQW-----LGNRKRILVLNREDMISMADRNAWATYFAK-----Q  175 (316)
Q Consensus       108 ~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i--~~~-----l~~k~~IlVlNK~DLv~~~~~~~~~~~~~~-----~  175 (316)
                      .............++.+++++|..+.........  ...     ....|+++|.||+|+.......+..+.+..     .
T Consensus        70 ~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~  149 (177)
T d1zj6a1          70 ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDH  149 (177)
T ss_dssp             ---CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSS
T ss_pred             cccccchhhhhccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHHHHHHHHHHhhHhc
Confidence            3344445566788999999999876543322111  111     126799999999998655443334443321     2


Q ss_pred             CceEEEeccccccchhhhHHHHHH
Q 021210          176 GTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       176 g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                      +..++.+||++|+|++++.+.|.+
T Consensus       150 ~~~~~~~Sa~tg~Gi~e~~~~L~~  173 (177)
T d1zj6a1         150 QWHIQACCALTGEGLCQGLEWMMS  173 (177)
T ss_dssp             CEEEEECBTTTTBTHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHH
Confidence            256889999999999998776543

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=2.5e-06  Score=70.76  Aligned_cols=95  Identities=12%  Similarity=0.010  Sum_probs=59.3

Q ss_pred             cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHH----HHHhCCCCEEEEEEccCCCChHh-----------
Q 021210          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLM----DQWLGNRKRILVLNREDMISMAD-----------  164 (316)
Q Consensus       102 ~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i----~~~l~~k~~IlVlNK~DLv~~~~-----------  164 (316)
                      +++|+ ..+.......+..+|++++|+|..++.+..+  ...    .....+.|.++|.||+||.+...           
T Consensus        63 D~~g~-e~~~~~~~~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r  141 (185)
T d2atxa1          63 DTAGQ-EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEK  141 (185)
T ss_dssp             CCCCS-SSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCC
T ss_pred             ccccc-chhhhhhhhcccccceeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccc
Confidence            34554 3333333456788999999999987543221  111    12223678999999999975321           


Q ss_pred             ---HHHHHHHHHhcC-ceEEEeccccccchhhhHHHH
Q 021210          165 ---RNAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLA  197 (316)
Q Consensus       165 ---~~~~~~~~~~~g-~~vi~iSa~~g~gi~~L~~~L  197 (316)
                         .++..++.++.+ ..++.+||++|.|++++.+.+
T Consensus       142 ~v~~~~~~~~a~~~~~~~~~E~SAk~~~gv~e~F~~l  178 (185)
T d2atxa1         142 PICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEA  178 (185)
T ss_dssp             CCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHH
T ss_pred             cccHHHHHHHHHHcCCCEEEEecCCCCcCHHHHHHHH
Confidence               122223334445 567889999999999886543

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=4.6e-06  Score=67.61  Aligned_cols=82  Identities=12%  Similarity=-0.045  Sum_probs=55.5

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHhC--CCCEEEEEEccCCCChHh--HHHHHHHHHhcCceEEEecccc
Q 021210          116 DQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG--NRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQL  186 (316)
Q Consensus       116 ~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l~--~k~~IlVlNK~DLv~~~~--~~~~~~~~~~~g~~vi~iSa~~  186 (316)
                      ..+..+|.+|+|+|..++.+..+.     .+.+...  +.|+++|.||+||....+  .++..++.++.+..++.+||++
T Consensus        71 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~  150 (167)
T d1xtqa1          71 TYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKE  150 (167)
T ss_dssp             GGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTC
T ss_pred             hhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecCC
Confidence            346789999999999876543321     1222222  468999999999854321  2223334445677889999999


Q ss_pred             ccchhhhHHHH
Q 021210          187 GMGTMKLSRLA  197 (316)
Q Consensus       187 g~gi~~L~~~L  197 (316)
                      |.|++++.+.+
T Consensus       151 ~~~v~~~f~~l  161 (167)
T d1xtqa1         151 NQTAVDVFRRI  161 (167)
T ss_dssp             HHHHHHHHHHH
T ss_pred             CCCHHHHHHHH
Confidence            99999886543

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=6.8e-06  Score=66.25  Aligned_cols=55  Identities=22%  Similarity=0.323  Sum_probs=37.3

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeC-C--cEEEEeCCCccc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG-K--DLEFLDSPGIIP  274 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~-~--~~~liDTPGi~~  274 (316)
                      ||+++|.+|||||||+|++.+.+. .....|.++...  .....+ .  .+.++||+|-..
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~   61 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMYDSF-DNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER   61 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSCC-CSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGG
T ss_pred             EEEEECCCCcCHHHHHHHHHhCCC-CCccccceeeeccceeeccCCCceeeeecccCCcch
Confidence            699999999999999999997653 333334443332  233332 2  367999999754

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=4.5e-06  Score=67.98  Aligned_cols=97  Identities=9%  Similarity=0.023  Sum_probs=60.1

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH--HH---HHhC-CCCEEEEEEccCCCChHh--HHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MD---QWLG-NRKRILVLNREDMISMAD--RNAWATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~--i~---~~l~-~k~~IlVlNK~DLv~~~~--~~~~~~~  171 (316)
                      +-++||+ .++..........+|++++|+|..++.+.....  +.   .... ..++++|.||+|+.+...  .++..+.
T Consensus        60 i~Dt~G~-e~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~  138 (170)
T d2g6ba1          60 MWDTAGQ-ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKL  138 (170)
T ss_dssp             EEECCCC---------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHH
T ss_pred             EEECCCc-hhhHHHHHHhhcCCceeEEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHH
Confidence            3457887 445444445689999999999987654322211  11   1112 568899999999876432  2223334


Q ss_pred             HHhcCceEEEeccccccchhhhHHHH
Q 021210          172 FAKQGTKVIFSNGQLGMGTMKLSRLA  197 (316)
Q Consensus       172 ~~~~g~~vi~iSa~~g~gi~~L~~~L  197 (316)
                      .+..+.+++.+||++|.|++++.+.+
T Consensus       139 ~~~~~~~~~e~Sak~g~gi~e~f~~l  164 (170)
T d2g6ba1         139 AKEYGLPFMETSAKTGLNVDLAFTAI  164 (170)
T ss_dssp             HHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             HHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence            45567889999999999999886554

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.91  E-value=2.7e-06  Score=69.67  Aligned_cols=98  Identities=8%  Similarity=-0.037  Sum_probs=55.3

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-HHHHH-----hCCCCEEEEEEccCCCChHh--HHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQW-----LGNRKRILVLNREDMISMAD--RNAWATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-~i~~~-----l~~k~~IlVlNK~DLv~~~~--~~~~~~~  171 (316)
                      +-++||+ ..+.......++.+|++|+|+|..++.+..+. .+...     ..+.++++|.||+|+.....  .++....
T Consensus        59 i~D~~G~-e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~  137 (173)
T d2fu5c1          59 IWDTAGQ-ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKL  137 (173)
T ss_dssp             EEEC----------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHH
T ss_pred             EEECCCc-hhhHHHHHHhccCCCEEEEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHH
Confidence            4567886 44444444568999999999999876533221 11111     12578999999999875422  2223344


Q ss_pred             HHhcCceEEEeccccccchhhhHHHHH
Q 021210          172 FAKQGTKVIFSNGQLGMGTMKLSRLAK  198 (316)
Q Consensus       172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~  198 (316)
                      ....+..++.+||++|.|++++...+.
T Consensus       138 ~~~~~~~~~e~Sa~~g~gv~e~f~~l~  164 (173)
T d2fu5c1         138 ALDYGIKFMETSAKANINVENAFFTLA  164 (173)
T ss_dssp             HHHHTCEEEECCC---CCHHHHHHHHH
T ss_pred             HHhcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            556678899999999999998875543

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=7.1e-06  Score=66.74  Aligned_cols=57  Identities=25%  Similarity=0.324  Sum_probs=37.2

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCccc-ccCCCCCceeeEEEEEeCC---cEEEEeCCCccc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFGK---DLEFLDSPGIIP  274 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~-~vs~~pgtT~~~~~~~~~~---~~~liDTPGi~~  274 (316)
                      .||+++|.+|||||||+++|...+.. ...+..+++..........   .+.++||+|-..
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~   67 (170)
T d1r2qa_           7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER   67 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchh
Confidence            57999999999999999999965421 2223333333322223322   477999999653

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=6.4e-06  Score=67.39  Aligned_cols=82  Identities=13%  Similarity=0.020  Sum_probs=53.9

Q ss_pred             HHhhcCeEEEEEeCCCCCCCCcH-HHHH-Hh-----CCCCEEEEEEccCCCChHh--HHHHHHHHHhcCceEEEeccccc
Q 021210          117 QLKLMDVVIEVRDARIPLSTTHP-LMDQ-WL-----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLG  187 (316)
Q Consensus       117 ~i~~aDlIl~VvDar~~~~~~~~-~i~~-~l-----~~k~~IlVlNK~DLv~~~~--~~~~~~~~~~~g~~vi~iSa~~g  187 (316)
                      .+..+|++|+|+|..+..+..+. .+.. ..     .+.|+++|.||+||.+..+  .++..++....+..++.+||++|
T Consensus        74 ~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g  153 (172)
T d2g3ya1          74 CMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQ  153 (172)
T ss_dssp             CCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTT
T ss_pred             cccccceeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCCC
Confidence            47899999999998765332211 1111 11     1568999999999864321  12222333455778899999999


Q ss_pred             cchhhhHHHHH
Q 021210          188 MGTMKLSRLAK  198 (316)
Q Consensus       188 ~gi~~L~~~L~  198 (316)
                      .|++++...+.
T Consensus       154 ~~i~~~f~~l~  164 (172)
T d2g3ya1         154 HNVKELFEGIV  164 (172)
T ss_dssp             BSHHHHHHHHH
T ss_pred             cCHHHHHHHHH
Confidence            99998765543

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=4.7e-06  Score=68.74  Aligned_cols=57  Identities=23%  Similarity=0.261  Sum_probs=37.3

Q ss_pred             ccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEeCC---cEEEEeCCCcc
Q 021210          215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       215 ~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~~~---~~~liDTPGi~  273 (316)
                      +..+||+++|.+|||||||+|++++... . .....|..+..  .+..+.   .+.+.|++|-.
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~~f-~-~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~   64 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTNAF-P-GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE   64 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSC-C-SSCCCCSCCEEEEEEEETTEEEEEEEECCCCSG
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhCCC-C-cccccceeeceeeeeeccCcceEEEeecccccc
Confidence            4578999999999999999999997652 1 22222333322  222222   35789999964

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.88  E-value=1e-05  Score=68.78  Aligned_cols=101  Identities=17%  Similarity=0.172  Sum_probs=61.6

Q ss_pred             cccccchHHHHHHHHH--HHH--hhcCeEEEEEeCCCCCCCCcHH---HHHH----hCCCCEEEEEEccCCCChHhHHHH
Q 021210          100 VQWYPGHIAKTEKELK--DQL--KLMDVVIEVRDARIPLSTTHPL---MDQW----LGNRKRILVLNREDMISMADRNAW  168 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~--~~i--~~aDlIl~VvDar~~~~~~~~~---i~~~----l~~k~~IlVlNK~DLv~~~~~~~~  168 (316)
                      +-++|||.........  ..+  ...+.++.++|+..........   +...    ....+.++|+||+|+.+.++.+.+
T Consensus        99 ~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~ivvinK~D~~~~~~~~~~  178 (244)
T d1yrba1          99 LIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERH  178 (244)
T ss_dssp             EEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHHHHHHH
T ss_pred             eeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHhCCCceeeeeccccccHHHHHHH
Confidence            4467999543222111  122  2356899999987654432211   1111    125789999999999987654333


Q ss_pred             HHHH----------------------------Hh--cCceEEEeccccccchhhhHHHHHHh
Q 021210          169 ATYF----------------------------AK--QGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       169 ~~~~----------------------------~~--~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      ..+.                            ..  ...+++++||++|+|+++|.++|.+.
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~  240 (244)
T d1yrba1         179 RKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH  240 (244)
T ss_dssp             HHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            2111                            01  11468999999999999999887763

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=3.5e-06  Score=68.47  Aligned_cols=95  Identities=14%  Similarity=-0.026  Sum_probs=57.9

Q ss_pred             ccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHH----hCCCCEEEEEEccCCCChHh--HHHHHHHHHh
Q 021210          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQW----LGNRKRILVLNREDMISMAD--RNAWATYFAK  174 (316)
Q Consensus       103 ~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~~~----l~~k~~IlVlNK~DLv~~~~--~~~~~~~~~~  174 (316)
                      ++|. .++.......+..+|++|+|+|..++.+..+.  .+...    ....++++|.||+|+....+  .++..++.++
T Consensus        59 ~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~  137 (167)
T d1z08a1          59 TAGQ-ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAES  137 (167)
T ss_dssp             CCCC--------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred             cCCc-ceecccchhhccCCceeEEEEeCCchhHHHhhhhhhhhcccccccccceeeeccccccccccccchHHHHHHHHH
Confidence            3454 33333334557899999999998875433221  11111    12567888999999864322  2233344555


Q ss_pred             cCceEEEeccccccchhhhHHHHH
Q 021210          175 QGTKVIFSNGQLGMGTMKLSRLAK  198 (316)
Q Consensus       175 ~g~~vi~iSa~~g~gi~~L~~~L~  198 (316)
                      .+..++.+||++|.|++++...|.
T Consensus       138 ~~~~~~e~Sak~~~~v~e~F~~l~  161 (167)
T d1z08a1         138 VGAKHYHTSAKQNKGIEELFLDLC  161 (167)
T ss_dssp             TTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred             cCCeEEEEecCCCcCHHHHHHHHH
Confidence            678889999999999999876543

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.87  E-value=1.5e-05  Score=64.78  Aligned_cols=84  Identities=13%  Similarity=0.195  Sum_probs=56.2

Q ss_pred             hhcCeEEEEEeCCCCCCCCcHHHHHHh-CCCCEEEEEEccCCCChH-hHHHHHHHHH-hcC-ceEEEeccccccchhhhH
Q 021210          119 KLMDVVIEVRDARIPLSTTHPLMDQWL-GNRKRILVLNREDMISMA-DRNAWATYFA-KQG-TKVIFSNGQLGMGTMKLS  194 (316)
Q Consensus       119 ~~aDlIl~VvDar~~~~~~~~~i~~~l-~~k~~IlVlNK~DLv~~~-~~~~~~~~~~-~~g-~~vi~iSa~~g~gi~~L~  194 (316)
                      ..+|+++++.|+.............+. ...+.++|+||+|++... +.....+.+. +.+ .+++++||++|.|+++|.
T Consensus        84 ~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~  163 (179)
T d1egaa1          84 GDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIA  163 (179)
T ss_dssp             CCEEEEEEEEETTCCCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHH
T ss_pred             hhcceeEEEEecCccchhHHHHHHHhhhccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcCCCCHHHHH
Confidence            567889999998754333332232322 256899999999987553 3333333332 333 578999999999999999


Q ss_pred             HHHHHhhh
Q 021210          195 RLAKALAS  202 (316)
Q Consensus       195 ~~L~~l~~  202 (316)
                      +.+.+..+
T Consensus       164 ~~i~~~lp  171 (179)
T d1egaa1         164 AIVRKHLP  171 (179)
T ss_dssp             HHHHTTCC
T ss_pred             HHHHHhCC
Confidence            88776543

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.87  E-value=2.2e-06  Score=71.65  Aligned_cols=96  Identities=10%  Similarity=-0.016  Sum_probs=61.3

Q ss_pred             cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH-----HHHHh-CCCCEEEEEEccCCCChHh--HHHHHHHHH
Q 021210          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL-GNRKRILVLNREDMISMAD--RNAWATYFA  173 (316)
Q Consensus       102 ~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~-----i~~~l-~~k~~IlVlNK~DLv~~~~--~~~~~~~~~  173 (316)
                      ++||+ .++.......++++|.+|+|+|..++.+..+..     +.+.. ...|+++|.||+|+.+...  .++......
T Consensus        61 Dt~G~-e~~~~~~~~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~  139 (194)
T d2bcgy1          61 DTAGQ-ERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFAD  139 (194)
T ss_dssp             CCTTT-TTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHH
T ss_pred             ECCCc-hhhHHHHHHHhccCCEEEEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHHHHhhhhh
Confidence            45665 233322335678999999999987643322211     11111 2568999999999976432  223334445


Q ss_pred             hcCceEEEeccccccchhhhHHHHH
Q 021210          174 KQGTKVIFSNGQLGMGTMKLSRLAK  198 (316)
Q Consensus       174 ~~g~~vi~iSa~~g~gi~~L~~~L~  198 (316)
                      ..+..++.+||++|.|++++.+.+.
T Consensus       140 ~~~~~~~e~SAk~g~gi~e~f~~l~  164 (194)
T d2bcgy1         140 ANKMPFLETSALDSTNVEDAFLTMA  164 (194)
T ss_dssp             HTTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             ccCcceEEEecCcCccHHHHHHHHH
Confidence            5667889999999999998765443

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=4.2e-06  Score=68.39  Aligned_cols=55  Identities=18%  Similarity=0.241  Sum_probs=33.2

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCC--CceeeEEEEEeCC---cEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP--GVTRVLKWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~p--gtT~~~~~~~~~~---~~~liDTPGi~  273 (316)
                      .||+++|.+|||||||+|++.+... .....|  |.......+..+.   .+.++||||-.
T Consensus         4 ~Ki~vvG~~~vGKTsli~~~~~~~f-~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~   63 (170)
T d1i2ma_           4 FKLVLVGDGGTGKTTFVKRHLTGEF-EKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE   63 (170)
T ss_dssp             EEEEEEECTTSSHHHHHHTTC------CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCC-Ccccccceecccccccccccccccccccccccccc
Confidence            4799999999999999999986542 111112  2122222222322   47899999964

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=8.7e-06  Score=66.19  Aligned_cols=57  Identities=28%  Similarity=0.444  Sum_probs=36.4

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE-EEEeCC---cEEEEeCCCccc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK-WVRFGK---DLEFLDSPGIIP  274 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~-~~~~~~---~~~liDTPGi~~  274 (316)
                      .+||+++|.+|||||||+|++..... .-...|.+..+.. .+..+.   .+.++||+|-..
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f-~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~   62 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRF-IWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED   62 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCC-CCccCCceeccccccccccccceEEEEeecccccc
Confidence            47899999999999999999997542 2222232112211 112222   477999999753

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=5.5e-06  Score=67.67  Aligned_cols=95  Identities=13%  Similarity=0.048  Sum_probs=60.0

Q ss_pred             cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HH---HHHh-CCCCEEEEEEccCCCChH--hHHHHHHHHH
Q 021210          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LM---DQWL-GNRKRILVLNREDMISMA--DRNAWATYFA  173 (316)
Q Consensus       102 ~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i---~~~l-~~k~~IlVlNK~DLv~~~--~~~~~~~~~~  173 (316)
                      +.+|+ ..+..........+|++++|+|..++.+..+.  .+   .+.. .+.|+++|.||+|+....  ..++...+.+
T Consensus        58 d~~g~-~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~  136 (173)
T d2a5ja1          58 DTAGQ-ESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAR  136 (173)
T ss_dssp             CCTTG-GGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred             cccCc-cchhhHHHHHhhccCEEEEEEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHHHH
Confidence            34454 33334445667899999999998875433221  11   1111 256899999999975321  1122233344


Q ss_pred             hcCceEEEeccccccchhhhHHHH
Q 021210          174 KQGTKVIFSNGQLGMGTMKLSRLA  197 (316)
Q Consensus       174 ~~g~~vi~iSa~~g~gi~~L~~~L  197 (316)
                      +.+..++.+||++|.|++++...+
T Consensus       137 ~~~~~~~e~Sa~tg~~V~e~f~~i  160 (173)
T d2a5ja1         137 EHGLIFMETSAKTACNVEEAFINT  160 (173)
T ss_dssp             HHTCEEEEECTTTCTTHHHHHHHH
T ss_pred             HcCCEEEEecCCCCCCHHHHHHHH
Confidence            556788999999999999876543

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=1.3e-05  Score=64.87  Aligned_cols=57  Identities=25%  Similarity=0.454  Sum_probs=37.0

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE-EEEEeCC---cEEEEeCCCccc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGIIP  274 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~-~~~~~~~---~~~liDTPGi~~  274 (316)
                      ..||+++|.+|||||||+|++.+... .....|....+. ..+.++.   .+.++||+|...
T Consensus         4 ~~Kv~liG~~~vGKTsLl~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~   64 (167)
T d1xtqa1           4 SRKIAILGYRSVGKSSLTIQFVEGQF-VDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDE   64 (167)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCC-CSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCT
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCC-CcccCcceecccceEEecCcEEEEeeecccccccc
Confidence            46899999999999999999986542 212223222222 2233332   367899999864

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=8.6e-06  Score=67.18  Aligned_cols=54  Identities=24%  Similarity=0.251  Sum_probs=36.4

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee-E-EEEEeCC---cEEEEeCCCcc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV-L-KWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~-~-~~~~~~~---~~~liDTPGi~  273 (316)
                      .+||+++|.+|||||||+|++++.....   ...++.+ . ..+.++.   .+.+.||+|..
T Consensus         5 ~~ki~vlG~~~vGKTsLi~~~~~~~f~~---~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~   63 (175)
T d2bmja1           5 ELRLGVLGDARSGKSSLIHRFLTGSYQV---LEKTESEQYKKEMLVDGQTHLVLIREEAGAP   63 (175)
T ss_dssp             EEEEEEECCTTTTHHHHHHHHHHSCCCC---CCCSSCEEEEEEEEETTEEEEEEEEECSSCC
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCC---cCCccceeEEEEeecCceEEEEEEeeccccc
Confidence            4799999999999999999999775322   2222222 1 2233332   36789999965

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=9.2e-06  Score=65.92  Aligned_cols=55  Identities=25%  Similarity=0.321  Sum_probs=36.5

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCccc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP  274 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~~  274 (316)
                      .||+++|.+|||||||+|++++...  ......|..+.  .....+.   .+.++||+|...
T Consensus         3 ~Ki~viG~~~vGKTsLi~r~~~~~f--~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~   62 (171)
T d2erxa1           3 YRVAVFGAGGVGKSSLVLRFVKGTF--RESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQ   62 (171)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTCCC--CSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCC--CCccCcceeeccccceeeccccceecccccccccc
Confidence            5799999999999999999987542  22222333332  1223333   367899999864

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=7.2e-06  Score=66.44  Aligned_cols=56  Identities=27%  Similarity=0.353  Sum_probs=36.1

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEeCC--cEEEEeCCCccc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK--DLEFLDSPGIIP  274 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~~~--~~~liDTPGi~~  274 (316)
                      .||+++|.+|||||||||+|.+... .....|...-...  ....+.  .+.++|++|...
T Consensus         4 ~Ki~viG~~~vGKTsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~   63 (166)
T d1ctqa_           4 YKLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE   63 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCC-CCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGG
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCC-CCccCCccceeeccceeeeceeeeeeeeeccCccc
Confidence            6899999999999999999997542 2222232222221  111122  367899999864

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.82  E-value=4.2e-06  Score=70.77  Aligned_cols=23  Identities=30%  Similarity=0.569  Sum_probs=21.5

Q ss_pred             ceEEeEeccCCCCcchhHHhhhc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~  239 (316)
                      .++|+++|..++|||||+|+|++
T Consensus         8 ~ini~iiGhVd~GKSTL~~~L~~   30 (205)
T d2qn6a3           8 EVNIGVVGHVDHGKTTLVQAITG   30 (205)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHS
T ss_pred             CeEEEEEEccCCcHHHHHHHHHh
Confidence            47999999999999999999986

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=1.1e-05  Score=66.12  Aligned_cols=97  Identities=14%  Similarity=0.006  Sum_probs=64.3

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHhC-----CCCEEEEEEccCCCChHh-HHHHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG-----NRKRILVLNREDMISMAD-RNAWATY  171 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l~-----~k~~IlVlNK~DLv~~~~-~~~~~~~  171 (316)
                      +-++||+ .++.......+..+|++++|+|..++.+...  ..+..+..     ..+++++.||.|...... ..+..++
T Consensus        60 i~Dt~G~-~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~~  138 (177)
T d1x3sa1          60 IWDTAGQ-ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKF  138 (177)
T ss_dssp             EEEECSS-GGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHH
T ss_pred             EEECCCc-hhhHHHHHHHHhcCCEEEEEEECCCccccccchhhhhhhcccccccceeeEEEeeccccccccccHHHHHHH
Confidence            3456776 3344344567899999999999876433221  11222221     467889999999865432 2334455


Q ss_pred             HHhcCceEEEeccccccchhhhHHHH
Q 021210          172 FAKQGTKVIFSNGQLGMGTMKLSRLA  197 (316)
Q Consensus       172 ~~~~g~~vi~iSa~~g~gi~~L~~~L  197 (316)
                      .++.+..++.+||++|.|++++.+.+
T Consensus       139 ~~~~~~~~~e~Sa~tg~gv~e~f~~l  164 (177)
T d1x3sa1         139 ARKHSMLFIEASAKTCDGVQCAFEEL  164 (177)
T ss_dssp             HHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             HHHCCCEEEEEeCCCCCCHHHHHHHH
Confidence            66677889999999999999987644

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=1.1e-05  Score=65.29  Aligned_cols=85  Identities=11%  Similarity=-0.083  Sum_probs=55.6

Q ss_pred             HHHHHHhhcCeEEEEEeCCCCCCCCcH--H---HHHHh--CCCCEEEEEEccCCCChHh--HHHHHHHHHh-cCceEEEe
Q 021210          113 ELKDQLKLMDVVIEVRDARIPLSTTHP--L---MDQWL--GNRKRILVLNREDMISMAD--RNAWATYFAK-QGTKVIFS  182 (316)
Q Consensus       113 ~l~~~i~~aDlIl~VvDar~~~~~~~~--~---i~~~l--~~k~~IlVlNK~DLv~~~~--~~~~~~~~~~-~g~~vi~i  182 (316)
                      ........+|++|+|+|..++.+..+.  .   +.+..  ...|+++|.||+|+.....  .++..+...+ .+..++.+
T Consensus        67 ~~~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~  146 (167)
T d1c1ya_          67 MRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLES  146 (167)
T ss_dssp             HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEEC
T ss_pred             cccccccccceeEEeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEE
Confidence            345678899999999999876433321  1   11111  2468999999999864422  1122223333 34678899


Q ss_pred             ccccccchhhhHHHH
Q 021210          183 NGQLGMGTMKLSRLA  197 (316)
Q Consensus       183 Sa~~g~gi~~L~~~L  197 (316)
                      ||++|.|++++.+.+
T Consensus       147 Sak~g~gv~e~F~~l  161 (167)
T d1c1ya_         147 SAKSKINVNEIFYDL  161 (167)
T ss_dssp             BTTTTBSHHHHHHHH
T ss_pred             cCCCCcCHHHHHHHH
Confidence            999999999876544

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=1.8e-05  Score=64.34  Aligned_cols=57  Identities=23%  Similarity=0.253  Sum_probs=34.7

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcccC
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIPM  275 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~~~  275 (316)
                      ..||+++|.+|||||||||++.+...  ......|..+.  ..+..+.   .+.++||+|....
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~r~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~   66 (171)
T d2erya1           5 KYRLVVVGGGGVGKSALTIQFIQSYF--VTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEF   66 (171)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCC--CSSCCTTCCEEEEEEEEETTEEEEEEEEECC----C
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCC--CcccCcccccceeeeeeecccccccccccccccccc
Confidence            46899999999999999999986542  12222233232  2233332   4679999998753

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=1.5e-05  Score=64.46  Aligned_cols=55  Identities=24%  Similarity=0.356  Sum_probs=36.0

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCC--CceeeEEEEEeCC---cEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP--GVTRVLKWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~p--gtT~~~~~~~~~~---~~~liDTPGi~  273 (316)
                      .||+++|.+|||||||++++.+... .....|  +.......+..+.   .+.++||+|-.
T Consensus         4 fKivlvG~~~vGKTsLi~r~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~   63 (167)
T d1z08a1           4 FKVVLLGEGCVGKTSLVLRYCENKF-NDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE   63 (167)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHCCC-CSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCC-CcccccccccchheeeeccCCccceeeeeccCCcc
Confidence            5899999999999999999986542 222223  2223233333322   46799999974

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.78  E-value=1.3e-05  Score=64.58  Aligned_cols=58  Identities=22%  Similarity=0.277  Sum_probs=38.5

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCccccc-CCCCCceeeEEEEEeC---CcEEEEeCCCccc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFG---KDLEFLDSPGIIP  274 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~v-s~~pgtT~~~~~~~~~---~~~~liDTPGi~~  274 (316)
                      -+||+++|.+|||||||+|++...+.... .+..+.+.........   ..+.++|++|...
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   63 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER   63 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchh
Confidence            36899999999999999999986653222 2223333333333332   2477999999753

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.78  E-value=1.1e-05  Score=66.39  Aligned_cols=84  Identities=8%  Similarity=-0.037  Sum_probs=55.3

Q ss_pred             HHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHhC-----CCCEEEEEEccCCCChHh-HHHHHHHHHh-cCceEEEe
Q 021210          115 KDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG-----NRKRILVLNREDMISMAD-RNAWATYFAK-QGTKVIFS  182 (316)
Q Consensus       115 ~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l~-----~k~~IlVlNK~DLv~~~~-~~~~~~~~~~-~g~~vi~i  182 (316)
                      ...+..+|++++++|..+..+..+.     ++.....     ..|+++|.||+||.+... .+...+++.+ .+..++.+
T Consensus        69 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~  148 (184)
T d1vg8a_          69 VAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFET  148 (184)
T ss_dssp             CGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEEC
T ss_pred             cccccCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHHHHhcCCeEEEE
Confidence            3457889999999999764332211     1222211     458999999999875432 2223333333 35788999


Q ss_pred             ccccccchhhhHHHHH
Q 021210          183 NGQLGMGTMKLSRLAK  198 (316)
Q Consensus       183 Sa~~g~gi~~L~~~L~  198 (316)
                      ||++|.|++++.+.+.
T Consensus       149 Sak~~~gI~e~f~~l~  164 (184)
T d1vg8a_         149 SAKEAINVEQAFQTIA  164 (184)
T ss_dssp             BTTTTBSHHHHHHHHH
T ss_pred             cCCCCcCHHHHHHHHH
Confidence            9999999999876553

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=1.5e-05  Score=65.06  Aligned_cols=54  Identities=20%  Similarity=0.182  Sum_probs=35.1

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~  273 (316)
                      .||+++|.+|||||||++++.+..... ...| |..+.  .....+.   .+.++||+|-.
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~~f~~-~~~~-t~~~~~~~~~~~~~~~~~l~i~D~~g~~   61 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKDQFPE-VYVP-TVFENYVADIEVDGKQVELALWDTAGLE   61 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCS-SCCC-CSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCC-CcCC-ceeeeccccccccccceeeeccccCccc
Confidence            479999999999999999998765221 1122 11111  1222322   47899999975

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=4.4e-06  Score=68.96  Aligned_cols=25  Identities=20%  Similarity=0.416  Sum_probs=22.4

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      -+||+++|.+|||||||+|+|.+.+
T Consensus         5 ~~Ki~ivG~~~vGKTsLi~~l~~~~   29 (186)
T d2f7sa1           5 LIKLLALGDSGVGKTTFLYRYTDNK   29 (186)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCSC
T ss_pred             EEEEEEECCCCcCHHHHHHHHhcCC
Confidence            3689999999999999999999654

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=8.7e-06  Score=67.35  Aligned_cols=55  Identities=24%  Similarity=0.248  Sum_probs=36.2

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEe-CC--cEEEEeCCCcc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRF-GK--DLEFLDSPGII  273 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~-~~--~~~liDTPGi~  273 (316)
                      .+||+++|.+|||||||+|++..... . +....|+.+.  ..+.. +.  .+.++||+|-.
T Consensus         9 ~~Ki~lvG~~~vGKTsLi~r~~~~~f-~-~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e   68 (185)
T d2atxa1           9 MLKCVVVGDGAVGKTCLLMSYANDAF-P-EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQE   68 (185)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSSC-C-CSCCCSSCCCEEEEEESSSCEEEEEEECCCCSS
T ss_pred             EEEEEEECCCCCCHHHHHHHHhhCCC-C-CcCCCceeeeeeEEEeeCCceEEeecccccccc
Confidence            57899999999999999999986542 2 2222233232  22222 22  36799999964

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.76  E-value=6.8e-06  Score=66.48  Aligned_cols=99  Identities=14%  Similarity=-0.039  Sum_probs=64.2

Q ss_pred             ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH-HHHH-----hCCCCEEEEEEccCCCChHh-HHHHHHHHH
Q 021210          101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-MDQW-----LGNRKRILVLNREDMISMAD-RNAWATYFA  173 (316)
Q Consensus       101 ~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~-i~~~-----l~~k~~IlVlNK~DLv~~~~-~~~~~~~~~  173 (316)
                      -++||+ .++.......++++|.+++|+|..++.+..+.. ....     ....+.+++.||.|+.+... .++..++..
T Consensus        56 ~Dt~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~~~~~~~~~~~~  134 (166)
T d1g16a_          56 WDTAGQ-ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAK  134 (166)
T ss_dssp             ECCTTG-GGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHH
T ss_pred             EECCCc-hhhHHHHHHHHhcCCEEEEEEECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhhhhhhHHHHHHHHH
Confidence            456775 333333446789999999999998764332211 1111     12567899999999875432 222333444


Q ss_pred             hcCceEEEeccccccchhhhHHHHHHh
Q 021210          174 KQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       174 ~~g~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                      +.+.+++.+||++|.|++++.+.|.++
T Consensus       135 ~~~~~~~~~Sa~~~~~v~e~f~~l~~~  161 (166)
T d1g16a_         135 ELGIPFIESSAKNDDNVNEIFFTLAKL  161 (166)
T ss_dssp             HHTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             hcCCeEEEECCCCCCCHHHHHHHHHHH
Confidence            567889999999999999987665443

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=8e-06  Score=67.84  Aligned_cols=96  Identities=11%  Similarity=-0.036  Sum_probs=58.9

Q ss_pred             cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHH----HHhCCCCEEEEEEccCCCChHh-----------
Q 021210          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMD----QWLGNRKRILVLNREDMISMAD-----------  164 (316)
Q Consensus       102 ~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~----~~l~~k~~IlVlNK~DLv~~~~-----------  164 (316)
                      +++|+ .++.......+..+|++++|+|..++.+..+.  .+.    ....+.|+++|.||+||.+...           
T Consensus        57 D~~g~-~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~  135 (191)
T d2ngra_          57 DTAGQ-EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQK  135 (191)
T ss_dssp             EECCS-GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCC
T ss_pred             ccccc-hhhhhhhhhcccccceeecccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccc
Confidence            34555 33333344557899999999999876432221  111    1123678999999999864321           


Q ss_pred             ---HHHHHHHHHhc-CceEEEeccccccchhhhHHHHH
Q 021210          165 ---RNAWATYFAKQ-GTKVIFSNGQLGMGTMKLSRLAK  198 (316)
Q Consensus       165 ---~~~~~~~~~~~-g~~vi~iSa~~g~gi~~L~~~L~  198 (316)
                         .++-.++..+. +..++.+||++|.|++++.+.+.
T Consensus       136 ~v~~~~~~~~~~~~~~~~~~e~SAk~~~~V~e~f~~l~  173 (191)
T d2ngra_         136 PITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI  173 (191)
T ss_dssp             CCCHHHHHHHHHHTTCSCEEECCTTTCTTHHHHHHHHH
T ss_pred             cccHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHH
Confidence               01111222332 35788999999999999866544

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=1.7e-05  Score=64.55  Aligned_cols=95  Identities=7%  Similarity=-0.056  Sum_probs=60.4

Q ss_pred             cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHhC-----CCCEEEEEEccCCCChHh-HHHHHH
Q 021210          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWLG-----NRKRILVLNREDMISMAD-RNAWAT  170 (316)
Q Consensus       102 ~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l~-----~k~~IlVlNK~DLv~~~~-~~~~~~  170 (316)
                      +++|. .+........+..+|+++++.|..++.+...     .++.++..     +.|+++|.||+|+.+... .++..+
T Consensus        61 d~~g~-~~~~~~~~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~  139 (174)
T d1wmsa_          61 DTAGQ-ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQA  139 (174)
T ss_dssp             ECCCC-GGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHH
T ss_pred             cccCc-ceehhhhhhhhhccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHH
Confidence            34554 3334445566899999999999886543221     11222221     468999999999865321 222333


Q ss_pred             HHHhcC-ceEEEeccccccchhhhHHHH
Q 021210          171 YFAKQG-TKVIFSNGQLGMGTMKLSRLA  197 (316)
Q Consensus       171 ~~~~~g-~~vi~iSa~~g~gi~~L~~~L  197 (316)
                      +.++.+ ..++.+||++|.|++++.+.+
T Consensus       140 ~~~~~~~~~~~e~Sak~~~gI~e~f~~l  167 (174)
T d1wmsa_         140 WCRDNGDYPYFETSAKDATNVAAAFEEA  167 (174)
T ss_dssp             HHHHTTCCCEEECCTTTCTTHHHHHHHH
T ss_pred             HHHHcCCCeEEEEcCCCCcCHHHHHHHH
Confidence            444444 678999999999999986543

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.75  E-value=4.6e-06  Score=76.56  Aligned_cols=88  Identities=17%  Similarity=0.115  Sum_probs=60.2

Q ss_pred             CCcchhhhhhccccCCcceEEEec--c----------------ccccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCC
Q 021210           72 GSIEAYEEECDWADLDADLYYWTK--S----------------LRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIP  133 (316)
Q Consensus        72 ~~~g~~~e~e~~~~~d~~~~~~~~--~----------------~~~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~  133 (316)
                      ++|-...|.+.+++++.....+..  .                +-.+-++||| ..+..++...+.-+|.+|+|||+..+
T Consensus        54 ~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~inliDtPGh-~dF~~ev~~al~~~D~allVVda~eG  132 (341)
T d1n0ua2          54 FTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGH-VDFSSEVTAALRVTDGALVVVDTIEG  132 (341)
T ss_dssp             -----------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEEEEEECCCCC-CSSCHHHHHHHHTCSEEEEEEETTTB
T ss_pred             ccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccceEEEEEcCCCc-HHHHHHHHHHHhhcCceEEEEecccC
Confidence            567777788888898887764421  1                1126799999 78999999999999999999999999


Q ss_pred             CCCCcHHHHHHh--CCCCEEEEEEccCCC
Q 021210          134 LSTTHPLMDQWL--GNRKRILVLNREDMI  160 (316)
Q Consensus       134 ~~~~~~~i~~~l--~~k~~IlVlNK~DLv  160 (316)
                      +......+.+..  .+.|.++++||+|..
T Consensus       133 v~~qT~~~~~~a~~~~~p~i~viNKiDr~  161 (341)
T d1n0ua2         133 VCVQTETVLRQALGERIKPVVVINKVDRA  161 (341)
T ss_dssp             SCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred             cchhHHHHHHHHHHcCCCeEEEEECcccc
Confidence            877655555443  378999999999963

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=3e-05  Score=62.86  Aligned_cols=93  Identities=16%  Similarity=0.053  Sum_probs=59.2

Q ss_pred             cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH-H----HHH--hCCCCEEEEEEccCCCChHh--HHHHHHHH
Q 021210          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-M----DQW--LGNRKRILVLNREDMISMAD--RNAWATYF  172 (316)
Q Consensus       102 ~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~-i----~~~--l~~k~~IlVlNK~DLv~~~~--~~~~~~~~  172 (316)
                      +++|... + .........+|.+++|+|..++.+..+.. +    ...  ..+.|+++|.||+||.+..+  .++..++.
T Consensus        56 D~~g~~~-~-~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a  133 (168)
T d2atva1          56 DTAGQED-T-IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLA  133 (168)
T ss_dssp             ECCCCCC-C-HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHH
T ss_pred             ecccccc-c-ccchhhhcccccceeecccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHH
Confidence            4456532 2 23345678899999999998764432211 1    111  12679999999999854321  12233344


Q ss_pred             HhcCceEEEeccccccc-hhhhHHH
Q 021210          173 AKQGTKVIFSNGQLGMG-TMKLSRL  196 (316)
Q Consensus       173 ~~~g~~vi~iSa~~g~g-i~~L~~~  196 (316)
                      ++.+..++.+||++|.| ++++...
T Consensus       134 ~~~~~~~~e~Saktg~gnV~e~F~~  158 (168)
T d2atva1         134 TELACAFYECSACTGEGNITEIFYE  158 (168)
T ss_dssp             HHHTSEEEECCTTTCTTCHHHHHHH
T ss_pred             HHhCCeEEEEccccCCcCHHHHHHH
Confidence            55678889999999985 8877654

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=5.8e-06  Score=68.20  Aligned_cols=88  Identities=16%  Similarity=0.016  Sum_probs=56.2

Q ss_pred             HHHHHHHHHhhcCeEEEEEeCCCCCCCCcH------HHHHHhCCCCEEEEEEccCCCChHhH--------------HHHH
Q 021210          110 TEKELKDQLKLMDVVIEVRDARIPLSTTHP------LMDQWLGNRKRILVLNREDMISMADR--------------NAWA  169 (316)
Q Consensus       110 ~~r~l~~~i~~aDlIl~VvDar~~~~~~~~------~i~~~l~~k~~IlVlNK~DLv~~~~~--------------~~~~  169 (316)
                      +.......+..+|++++|+|..+..+..+.      .+.....+.|+++|.||+|+.+....              .+..
T Consensus        66 ~~~~~~~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  145 (183)
T d1mh1a_          66 YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL  145 (183)
T ss_dssp             GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHH
T ss_pred             chhhhhhcccccceeeeeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHH
Confidence            333334557899999999999865432221      11122236799999999998654221              1122


Q ss_pred             HHHHhcC-ceEEEeccccccchhhhHHHH
Q 021210          170 TYFAKQG-TKVIFSNGQLGMGTMKLSRLA  197 (316)
Q Consensus       170 ~~~~~~g-~~vi~iSa~~g~gi~~L~~~L  197 (316)
                      .+.++.+ ..++.+||++|.|++++...+
T Consensus       146 ~~a~~~~~~~~~E~SAk~~~~V~e~F~~l  174 (183)
T d1mh1a_         146 AMAKEIGAVKYLECSALTQRGLKTVFDEA  174 (183)
T ss_dssp             HHHHHTTCSEEEECCTTTCTTHHHHHHHH
T ss_pred             HHHHHcCCceEEEcCCCCCcCHHHHHHHH
Confidence            2333444 578889999999999886544

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=97.72  E-value=1.5e-05  Score=64.73  Aligned_cols=55  Identities=22%  Similarity=0.231  Sum_probs=33.6

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCccc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP  274 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~~  274 (316)
                      .||+++|.+|||||||+|++...+. . .....|..+.  ..+..+.   .+.++||+|...
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~~~f-~-~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~   64 (168)
T d1u8za_           5 HKVIMVGSGGVGKSALTLQFMYDEF-V-EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED   64 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCC-C-SCCCTTCCEEEEEEEEETTEEEEEEEEECCC---
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCC-C-cccCCccccccccccccccccccccccccccccc
Confidence            3799999999999999999986542 1 2222222221  1222332   467899999864

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.71  E-value=1.1e-05  Score=65.54  Aligned_cols=97  Identities=13%  Similarity=0.043  Sum_probs=62.6

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH--H---HHH-hCCCCEEEEEEccCCCChH-----hHHHH
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--M---DQW-LGNRKRILVLNREDMISMA-----DRNAW  168 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~--i---~~~-l~~k~~IlVlNK~DLv~~~-----~~~~~  168 (316)
                      +-+++|+ .++.......+..+|.+++|+|..++.+..+..  +   ... ....+.+++.||+|+.+..     ..++.
T Consensus        56 i~d~~g~-~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~  134 (170)
T d1ek0a_          56 IWDTAGQ-ERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEG  134 (170)
T ss_dssp             EEEECCS-GGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHH
T ss_pred             ccccCCc-hhHHHHHHHHHhccceEEEEEeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHH
Confidence            3345555 334333456789999999999998754433221  1   111 1257899999999985321     11223


Q ss_pred             HHHHHhcCceEEEeccccccchhhhHHHH
Q 021210          169 ATYFAKQGTKVIFSNGQLGMGTMKLSRLA  197 (316)
Q Consensus       169 ~~~~~~~g~~vi~iSa~~g~gi~~L~~~L  197 (316)
                      .++.++.+..++.+||++|.|++++...|
T Consensus       135 ~~~~~~~~~~~~e~Sak~g~gV~e~F~~i  163 (170)
T d1ek0a_         135 EKLAEEKGLLFFETSAKTGENVNDVFLGI  163 (170)
T ss_dssp             HHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred             HHHHHHcCCEEEEecCCCCcCHHHHHHHH
Confidence            34455667889999999999999876553

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=1.7e-05  Score=65.74  Aligned_cols=56  Identities=25%  Similarity=0.381  Sum_probs=36.4

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE-EEEEeC-C--cEEEEeCCCcc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFG-K--DLEFLDSPGII  273 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~-~~~~~~-~--~~~liDTPGi~  273 (316)
                      .+||+++|.+|||||||++++.+... .....|.+.... .....+ .  .+.++||+|-.
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~   62 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQE   62 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCC-CCCcCCceeeecceeEeeCCceeeeeccccccch
Confidence            47899999999999999999986542 222223222111 122222 2  47899999964

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.67  E-value=3.4e-05  Score=60.80  Aligned_cols=95  Identities=11%  Similarity=0.050  Sum_probs=61.4

Q ss_pred             ccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHH----
Q 021210          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATY----  171 (316)
Q Consensus       103 ~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~----  171 (316)
                      .||. .............+|.+++++|..+......  ..+...+     ...+++++.||+|+.+.....+....    
T Consensus        51 ~~g~-~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~  129 (160)
T d1r8sa_          51 VGGQ-DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH  129 (160)
T ss_dssp             CCCC-GGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGG
T ss_pred             CCCc-ccchhhhhhhhccceeEEEEEEecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHH
Confidence            4554 3344455677899999999999876543222  1122222     25689999999998764433322221    


Q ss_pred             -HHhcCceEEEeccccccchhhhHHHHH
Q 021210          172 -FAKQGTKVIFSNGQLGMGTMKLSRLAK  198 (316)
Q Consensus       172 -~~~~g~~vi~iSa~~g~gi~~L~~~L~  198 (316)
                       ....+..++++||++|+|++++.+.|.
T Consensus       130 ~~~~~~~~~~~~SAktg~gi~e~~~~l~  157 (160)
T d1r8sa_         130 SLRHRNWYIQATCATSGDGLYEGLDWLS  157 (160)
T ss_dssp             GCSSCCEEEEECBTTTTBTHHHHHHHHH
T ss_pred             HHhhCCCEEEEeECCCCCCHHHHHHHHH
Confidence             112346788999999999999887654

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.66  E-value=1.5e-05  Score=65.82  Aligned_cols=51  Identities=20%  Similarity=0.308  Sum_probs=34.0

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe---CCcEEEEeCCCcc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGII  273 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~  273 (316)
                      -+||+++|.+|||||||++++.    ......|  |.+.....+   ...+.++||+|..
T Consensus         2 ~iKivllG~~~vGKTsll~r~~----f~~~~~p--TiG~~~~~~~~~~~~~~~~D~~gq~   55 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMR----IIHGQDP--TKGIHEYDFEIKNVPFKMVDVGGQR   55 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH----HHHSCCC--CSSEEEEEEEETTEEEEEEEECC--
T ss_pred             eEEEEEECCCCCCHHHHHHHHh----cCCCCCC--eeeeEEEEEeeeeeeeeeeccccee
Confidence            4789999999999999999993    1222233  444333222   3468899999974

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=1.8e-05  Score=64.60  Aligned_cols=55  Identities=18%  Similarity=0.085  Sum_probs=34.2

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee--EEEEEeCC---cEEEEeCCCc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGI  272 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~--~~~~~~~~---~~~liDTPGi  272 (316)
                      .||+++|.+|||||||+|++.+......+..+.+..+  ...+.++.   .+.++|+||.
T Consensus         4 ~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~   63 (172)
T d2g3ya1           4 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN   63 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTT
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccc
Confidence            5799999999999999999987653333333322222  22233332   3578898764

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=3.6e-05  Score=62.14  Aligned_cols=57  Identities=23%  Similarity=0.240  Sum_probs=37.2

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcccC
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIPM  275 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~~~  275 (316)
                      ..||+++|.+|||||||++++......  .....|..+.  ..+..+.   .+.++|++|....
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~   64 (167)
T d1c1ya_           3 EYKLVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQF   64 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCC--CSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSS
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCC--CccCCccccccceeEEeeeeEEEeccccccCcccc
Confidence            468999999999999999999866522  2222222221  1222232   3789999998753

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.59  E-value=5.3e-05  Score=61.48  Aligned_cols=58  Identities=24%  Similarity=0.363  Sum_probs=37.0

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee-EEEEEeCC---cEEEEeCCCcccC
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV-LKWVRFGK---DLEFLDSPGIIPM  275 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~-~~~~~~~~---~~~liDTPGi~~~  275 (316)
                      ..||+++|.+|||||||+|++.+.... -...|...-. ...+..+.   .+.++||+|-...
T Consensus         4 t~Ki~lvG~~~vGKTsll~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~   65 (169)
T d1x1ra1           4 TYKLVVVGDGGVGKSALTIQFFQKIFV-PDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEF   65 (169)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCC-TTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGG
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCC-cccCcceeecccccccccccccccccccccccccc
Confidence            368999999999999999999875422 1222221111 12223322   4679999998654

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=97.56  E-value=2.3e-05  Score=67.39  Aligned_cols=24  Identities=42%  Similarity=0.512  Sum_probs=21.6

Q ss_pred             cceEEeEeccCCCCcchhHHhhhc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~  239 (316)
                      .-++++++|..++|||||+++|+.
T Consensus         8 ~~~~i~viGHVd~GKSTL~~~Ll~   31 (222)
T d1zunb3           8 EMLRFLTCGNVDDGKSTLIGRLLH   31 (222)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcceEEEEcCCCCCHHHHHHHHHH
Confidence            457899999999999999999973

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.49  E-value=6.5e-05  Score=61.62  Aligned_cols=54  Identities=20%  Similarity=0.308  Sum_probs=35.2

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeC-C--cEEEEeCCCcc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG-K--DLEFLDSPGII  273 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~-~--~~~liDTPGi~  273 (316)
                      +||+++|.+|||||||++++..... .-...| |..+.  ..+..+ .  .+.++||+|-.
T Consensus         3 ~KivliG~~~vGKTsli~r~~~~~f-~~~~~~-t~~~~~~~~~~~~~~~~~~~i~D~~g~~   61 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAKDCF-PENYVP-TVFENYTASFEIDTQRIELSLWDTSGSP   61 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCC-CSSCCC-CSEEEEEEEEECSSCEEEEEEEEECCSG
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCC-CCccCC-ceeecccccccccceEEeeccccccccc
Confidence            5799999999999999999987642 112222 22222  223332 2  36799999964

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.42  E-value=0.00014  Score=60.61  Aligned_cols=62  Identities=18%  Similarity=0.140  Sum_probs=39.5

Q ss_pred             cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC---cHHHHHHh-------CCCCEEEEEEccCCCC
Q 021210          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT---HPLMDQWL-------GNRKRILVLNREDMIS  161 (316)
Q Consensus       100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~---~~~i~~~l-------~~k~~IlVlNK~DLv~  161 (316)
                      +-++||+.......+...+..+|.+++|+|+.+.....   ...+..++       ...|+++|+||+|+.+
T Consensus        51 ~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~  122 (207)
T d2fh5b1          51 LIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM  122 (207)
T ss_dssp             EEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT
T ss_pred             eeeccccccccchhhhhhhhhccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCC
Confidence            34567874333445567789999999999997543211   11222222       1457889999999975

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.39  E-value=5.9e-05  Score=61.49  Aligned_cols=51  Identities=20%  Similarity=0.290  Sum_probs=35.1

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCcc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII  273 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~  273 (316)
                      .+||+++|..|||||||++++.....      |.+......+.. ...+.+.||.|-.
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~~~------~t~~~~~~~~~~~~~~~~i~D~~Gq~   53 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKIIHE------AGTGIVETHFTFKDLHFKMFDVGGQR   53 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHS------CCCSEEEEEEEETTEEEEEEEECCSG
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCC------CCccEEEEEEEeeeeeeeeecccccc
Confidence            47899999999999999999875432      222222222233 3367899999964

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.35  E-value=5e-05  Score=62.37  Aligned_cols=84  Identities=15%  Similarity=0.031  Sum_probs=53.4

Q ss_pred             HHHHhhcCeEEEEEeCCCCCCCCcH--HHHHH----hCCCCEEEEEEccCCCChHh--------------HHHHHHHHHh
Q 021210          115 KDQLKLMDVVIEVRDARIPLSTTHP--LMDQW----LGNRKRILVLNREDMISMAD--------------RNAWATYFAK  174 (316)
Q Consensus       115 ~~~i~~aDlIl~VvDar~~~~~~~~--~i~~~----l~~k~~IlVlNK~DLv~~~~--------------~~~~~~~~~~  174 (316)
                      ...+..+|++|+|+|..++.+..+.  .+...    -.+.|+++|.||+|+.....              .++..+..++
T Consensus        68 ~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~  147 (179)
T d1m7ba_          68 PLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQ  147 (179)
T ss_dssp             GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH
T ss_pred             cchhhhhhhhheeeecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHH
Confidence            3457899999999999875432211  11111    13679999999999853210              1223333444


Q ss_pred             cC-ceEEEecccccc-chhhhHHHHH
Q 021210          175 QG-TKVIFSNGQLGM-GTMKLSRLAK  198 (316)
Q Consensus       175 ~g-~~vi~iSa~~g~-gi~~L~~~L~  198 (316)
                      .+ ..++.+||++|. |++++.+.+.
T Consensus       148 ~~~~~y~E~SAk~~~n~i~~~F~~~~  173 (179)
T d1m7ba_         148 IGAATYIECSALQSENSVRDIFHVAT  173 (179)
T ss_dssp             HTCSEEEECBTTTBHHHHHHHHHHHH
T ss_pred             hCCCeEEEEeCCCCCcCHHHHHHHHH
Confidence            44 467889999997 5888776543

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=97.28  E-value=0.00031  Score=55.28  Aligned_cols=87  Identities=14%  Similarity=0.049  Sum_probs=56.3

Q ss_pred             HHHHHHhhcCeEEEEEeCCCCCCCCcHH--HHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHH-----HhcCceEE
Q 021210          113 ELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL-----GNRKRILVLNREDMISMADRNAWATYF-----AKQGTKVI  180 (316)
Q Consensus       113 ~l~~~i~~aDlIl~VvDar~~~~~~~~~--i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~-----~~~g~~vi  180 (316)
                      ........++.+++++|..+........  +...+     ...+++++.||+|+.......+.....     .....+++
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~  144 (169)
T d1upta_          65 YWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIF  144 (169)
T ss_dssp             GGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEE
T ss_pred             cchhhhhhhhhhhhhhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEE
Confidence            3345578889999999987554332211  11111     256889999999998654333333322     12235789


Q ss_pred             EeccccccchhhhHHHHHH
Q 021210          181 FSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       181 ~iSa~~g~gi~~L~~~L~~  199 (316)
                      ++||++|.|++++.+.|.+
T Consensus       145 ~~SA~~g~gv~e~~~~l~~  163 (169)
T d1upta_         145 KTSATKGTGLDEAMEWLVE  163 (169)
T ss_dssp             ECCTTTCTTHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHH
Confidence            9999999999998776644

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=6.8e-05  Score=66.56  Aligned_cols=57  Identities=28%  Similarity=0.423  Sum_probs=39.2

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcc-cccCCC-CCceeeEE-EEE-e----CCcEEEEeCCCcccC
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRM-CPAAPR-PGVTRVLK-WVR-F----GKDLEFLDSPGIIPM  275 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~-~~vs~~-pgtT~~~~-~~~-~----~~~~~liDTPGi~~~  275 (316)
                      -|+++|...+|||+|+|.|++... ..++.. -.+|+++- |.. .    +..+.++||.|+...
T Consensus        34 vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~~   98 (277)
T d1f5na2          34 VVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV   98 (277)
T ss_dssp             EEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEeccccccc
Confidence            479999999999999999997642 223321 23677652 221 1    234889999999754

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.15  E-value=3.5e-05  Score=66.96  Aligned_cols=58  Identities=19%  Similarity=0.269  Sum_probs=39.1

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcc------------------------------cccCCCCCceeeEE---EEEeCCc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRM------------------------------CPAAPRPGVTRVLK---WVRFGKD  263 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~------------------------------~~vs~~pgtT~~~~---~~~~~~~  263 (316)
                      .++|+++|..++|||||+-+|+-...                              .......|.|.+..   ....+.+
T Consensus         6 ~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~   85 (239)
T d1f60a3           6 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQ   85 (239)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEE
T ss_pred             ccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCCEE
Confidence            47999999999999999999862100                              00011247777642   2223567


Q ss_pred             EEEEeCCCccc
Q 021210          264 LEFLDSPGIIP  274 (316)
Q Consensus       264 ~~liDTPGi~~  274 (316)
                      +.|+||||-.+
T Consensus        86 i~iiDtPGH~d   96 (239)
T d1f60a3          86 VTVIDAPGHRD   96 (239)
T ss_dssp             EEEEECCCCTT
T ss_pred             EEEEECCCcHH
Confidence            99999999753

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.15  E-value=0.00019  Score=56.12  Aligned_cols=83  Identities=11%  Similarity=0.124  Sum_probs=51.8

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCCcHH--HHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHHH------------hcC
Q 021210          116 DQLKLMDVVIEVRDARIPLSTTHPL--MDQWL-----GNRKRILVLNREDMISMADRNAWATYFA------------KQG  176 (316)
Q Consensus       116 ~~i~~aDlIl~VvDar~~~~~~~~~--i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~~------------~~g  176 (316)
                      .....++.+++++|..+........  .....     .+.+++++.||+|+.......+..+.+.            ..+
T Consensus        63 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  142 (166)
T d2qtvb1          63 DYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRP  142 (166)
T ss_dssp             GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC---CCSSCC
T ss_pred             hhhhheeeeeeeccccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccCCHHHHHHHhhhhhhhHHHhhcccCC
Confidence            4467789999999987643322111  11111     2578999999999865322222322221            112


Q ss_pred             ceEEEeccccccchhhhHHHHH
Q 021210          177 TKVIFSNGQLGMGTMKLSRLAK  198 (316)
Q Consensus       177 ~~vi~iSa~~g~gi~~L~~~L~  198 (316)
                      ..++.+||++|+|++++.+.|.
T Consensus       143 ~~~~~~SA~tg~Gv~e~~~~l~  164 (166)
T d2qtvb1         143 VEVFMCSVVMRNGYLEAFQWLS  164 (166)
T ss_dssp             EEEEEEBTTTTBSHHHHHHHHT
T ss_pred             CEEEEeeCCCCCCHHHHHHHHh
Confidence            4578999999999998877654

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.13  E-value=0.00013  Score=64.74  Aligned_cols=66  Identities=17%  Similarity=0.309  Sum_probs=41.0

Q ss_pred             EEeEeccCCCCcchhHHhhhcCcc-----------cccCC------CCCceeeE---EEEEeCCcEEEEeCCCcccCCCC
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRM-----------CPAAP------RPGVTRVL---KWVRFGKDLEFLDSPGIIPMRIS  278 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~-----------~~vs~------~pgtT~~~---~~~~~~~~~~liDTPGi~~~~~~  278 (316)
                      +|+++|..++|||||+.+|+-...           ..+.+      .-|+|.+.   ...+.+..+.|+||||..++- .
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~-~   86 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFT-I   86 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCS-T
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhhH-H
Confidence            599999999999999999973211           01111      12444443   222336679999999998753 3


Q ss_pred             CHHHHHH
Q 021210          279 DQAAAIK  285 (316)
Q Consensus       279 ~~~~~~~  285 (316)
                      +...++.
T Consensus        87 e~~~~l~   93 (276)
T d2bv3a2          87 EVERSMR   93 (276)
T ss_dssp             THHHHHH
T ss_pred             HHHHHHH
Confidence            4444444

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=97.09  E-value=0.00014  Score=64.18  Aligned_cols=57  Identities=23%  Similarity=0.266  Sum_probs=37.4

Q ss_pred             EEeEeccCCCCcchhHHhhhcCccc-----c------cCC------CCCceeeEE---EEEeCCcEEEEeCCCcccC
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRRMC-----P------AAP------RPGVTRVLK---WVRFGKDLEFLDSPGIIPM  275 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~~~-----~------vs~------~pgtT~~~~---~~~~~~~~~liDTPGi~~~  275 (316)
                      +|+++|..++|||||+.+|+.....     .      +.+      .-|.|.+..   ..+.+..+.++||||..++
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF   80 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF   80 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhh
Confidence            5899999999999999999632111     1      111      124444432   2233567999999999764

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.08  E-value=0.0003  Score=57.31  Aligned_cols=53  Identities=17%  Similarity=0.175  Sum_probs=36.8

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEE--e-CCcEEEEeCCCccc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-GKDLEFLDSPGIIP  274 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~--~-~~~~~liDTPGi~~  274 (316)
                      .+||+++|-.|||||||++++.....   ...|  |.......  . ...+.++||.|-..
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~~~---~~~p--TiG~~~~~~~~~~~~~~~~d~~g~~~   57 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRIIHG---SGVP--TTGIIEYPFDLQSVIFRMVDVGGQRS   57 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTS---SCCC--CCSCEEEEEECSSCEEEEEECCCSTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCC---CCCc--eeeEEEEEEeccceeeeecccccccc
Confidence            46899999999999999999975542   2333  33332222  2 34678999999753

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.98  E-value=0.00011  Score=62.65  Aligned_cols=22  Identities=36%  Similarity=0.581  Sum_probs=20.4

Q ss_pred             ceEEeEeccCCCCcchhHHhhh
Q 021210          217 AVRAGIVGYPNVGKSSLINRLL  238 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~  238 (316)
                      .++|+++|.-+.|||||+-+|+
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll   24 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLL   24 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHH
T ss_pred             ccEEEEEecCCCCHHHHHHHHH
Confidence            4789999999999999999986

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.93  E-value=0.0001  Score=64.11  Aligned_cols=22  Identities=32%  Similarity=0.430  Sum_probs=20.3

Q ss_pred             ceEEeEeccCCCCcchhHHhhh
Q 021210          217 AVRAGIVGYPNVGKSSLINRLL  238 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~  238 (316)
                      .++|+++|..++|||||+.+|+
T Consensus        24 ~iNi~iiGHVD~GKSTL~~~Ll   45 (245)
T d1r5ba3          24 HVNIVFIGHVDAGKSTLGGNIL   45 (245)
T ss_dssp             EEEEEEEECGGGTHHHHHHHHH
T ss_pred             ceEEEEEeeCCCCHHHHHHHHH
Confidence            5789999999999999999995

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.87  E-value=0.00082  Score=53.59  Aligned_cols=86  Identities=13%  Similarity=0.069  Sum_probs=54.4

Q ss_pred             HHHHHhhcCeEEEEEeCCCCCCCCcHH--HHHH-----hCCCCEEEEEEccCCCChHhHHHHHHHHHh------------
Q 021210          114 LKDQLKLMDVVIEVRDARIPLSTTHPL--MDQW-----LGNRKRILVLNREDMISMADRNAWATYFAK------------  174 (316)
Q Consensus       114 l~~~i~~aDlIl~VvDar~~~~~~~~~--i~~~-----l~~k~~IlVlNK~DLv~~~~~~~~~~~~~~------------  174 (316)
                      ........+.+++++|..+........  +...     ..+.|.+++.||.|+.......+..+.+..            
T Consensus        74 ~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~  153 (186)
T d1f6ba_          74 WKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSL  153 (186)
T ss_dssp             GGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCT
T ss_pred             HhhhhcccceeeeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhhH
Confidence            345678899999999987643322111  1111     236899999999998653332223332211            


Q ss_pred             -----cCceEEEeccccccchhhhHHHHHH
Q 021210          175 -----QGTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       175 -----~g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                           .+..++++||++|+|++++.+.|.+
T Consensus       154 ~~~~~~~~~~~~~SA~tg~Gi~e~~~~l~~  183 (186)
T d1f6ba_         154 KELNARPLEVFMCSVLKRQGYGEGFRWMAQ  183 (186)
T ss_dssp             TTCCSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred             HHhhcCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence                 1135788999999999988776543

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.85  E-value=0.00019  Score=64.99  Aligned_cols=23  Identities=30%  Similarity=0.651  Sum_probs=21.3

Q ss_pred             cceEEeEeccCCCCcchhHHhhh
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLL  238 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~  238 (316)
                      ...+|+|.|.||||||||+|+|.
T Consensus        53 ~~~~IgitG~pGaGKSTLi~~l~   75 (327)
T d2p67a1          53 NTLRLGVTGTPGAGKSTFLEAFG   75 (327)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHH
T ss_pred             CceEEEeeCCCCCCHHHHHHHHH
Confidence            46789999999999999999997

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=0.0012  Score=53.67  Aligned_cols=81  Identities=12%  Similarity=-0.034  Sum_probs=50.0

Q ss_pred             HHhhcCeEEEEEeCCCCCCCCcH-HHHHHh---C-----CCCEEEEEEccCCCChHh----HHHHHHHHHhc-CceEEEe
Q 021210          117 QLKLMDVVIEVRDARIPLSTTHP-LMDQWL---G-----NRKRILVLNREDMISMAD----RNAWATYFAKQ-GTKVIFS  182 (316)
Q Consensus       117 ~i~~aDlIl~VvDar~~~~~~~~-~i~~~l---~-----~k~~IlVlNK~DLv~~~~----~~~~~~~~~~~-g~~vi~i  182 (316)
                      .++.+|++|+|+|..+..+..+. .+..++   .     ..|+++|.||.|+....+    ..+..++..+. +..++.+
T Consensus        67 ~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~  146 (175)
T d2bmja1          67 FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYET  146 (175)
T ss_dssp             HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEE
T ss_pred             cccccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEe
Confidence            56789999999998765432221 112111   1     347899999999743211    11122223333 4678889


Q ss_pred             ccccccchhhhHHHH
Q 021210          183 NGQLGMGTMKLSRLA  197 (316)
Q Consensus       183 Sa~~g~gi~~L~~~L  197 (316)
                      ||++|.|++++...+
T Consensus       147 SAk~~~~v~~~F~~l  161 (175)
T d2bmja1         147 CATYGLNVDRVFQEV  161 (175)
T ss_dssp             BTTTTBTHHHHHHHH
T ss_pred             CCCCCcCHHHHHHHH
Confidence            999999999875543

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.44  E-value=0.00072  Score=61.49  Aligned_cols=21  Identities=24%  Similarity=0.463  Sum_probs=19.4

Q ss_pred             EEeEeccCCCCcchhHHhhhc
Q 021210          219 RAGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~  239 (316)
                      +|+++|..+.|||||+.+|+.
T Consensus        19 NI~iiGhvd~GKTTL~d~Ll~   39 (341)
T d1n0ua2          19 NMSVIAHVDHGKSTLTDSLVQ   39 (341)
T ss_dssp             EEEEECCGGGTHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHH
Confidence            499999999999999999973

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.42  E-value=0.00046  Score=55.28  Aligned_cols=23  Identities=35%  Similarity=0.756  Sum_probs=20.8

Q ss_pred             eEEeEeccCCCCcchhHHhhhcC
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      +||+++|.+|+|||||++.|.+.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhc
Confidence            37999999999999999999864

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.40  E-value=0.00097  Score=56.30  Aligned_cols=52  Identities=15%  Similarity=0.215  Sum_probs=34.5

Q ss_pred             eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCccc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGIIP  274 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~~  274 (316)
                      .||+++|..|||||||++++....   ..+.-|..  ...+.+ +..+.+.|+.|-..
T Consensus         7 ~KilllG~~~vGKTsll~~~~~~~---~~pTiG~~--~~~~~~~~~~~~~~D~~Gq~~   59 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMRILH---VVLTSGIF--ETKFQVDKVNFHMFDVGGQRD   59 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH---CCCCCSCE--EEEEEETTEEEEEEECCCSTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC---cCCCCCeE--EEEEEECcEEEEEEecCccce
Confidence            579999999999999999996432   22222322  122333 33678999999654

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=96.23  E-value=0.00063  Score=53.76  Aligned_cols=20  Identities=20%  Similarity=0.586  Sum_probs=18.8

Q ss_pred             EeEeccCCCCcchhHHhhhc
Q 021210          220 AGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       220 i~ivG~pNvGKSTLiN~L~~  239 (316)
                      ++|+|.+|+|||||+|.|.+
T Consensus         5 i~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           5 LAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHH
Confidence            89999999999999999974

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.22  E-value=0.0099  Score=48.30  Aligned_cols=63  Identities=16%  Similarity=0.262  Sum_probs=41.6

Q ss_pred             cccccchHH---HHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH---HHH------Hh--CCCCEEEEEEccCCCCh
Q 021210          100 VQWYPGHIA---KTEKELKDQLKLMDVVIEVRDARIPLSTTHPL---MDQ------WL--GNRKRILVLNREDMISM  162 (316)
Q Consensus       100 i~~~Pgh~~---~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~---i~~------~l--~~k~~IlVlNK~DLv~~  162 (316)
                      +-++|||..   ...+.+...+..++.++.++|+..........   +..      ..  .+.|+++|+||+|+.+.
T Consensus        50 l~D~~g~~~~~~~~~~~~~~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~  126 (209)
T d1nrjb_          50 LVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA  126 (209)
T ss_dssp             EEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             EEecccccchhhHHHHHHHHHhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeccccc
Confidence            567788842   34455556678889999999987654433211   111      11  26799999999999754

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.14  E-value=0.00032  Score=59.15  Aligned_cols=36  Identities=31%  Similarity=0.237  Sum_probs=27.4

Q ss_pred             EeEeccCCCCcchhHHhhhcCccc--ccCCCCCceeeE
Q 021210          220 AGIVGYPNVGKSSLINRLLKRRMC--PAAPRPGVTRVL  255 (316)
Q Consensus       220 i~ivG~pNvGKSTLiN~L~~~~~~--~vs~~pgtT~~~  255 (316)
                      ++++|.+||||+||+|.|+.....  ..-.++.|||..
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~   42 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQP   42 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCC
T ss_pred             EEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccCC
Confidence            789999999999999999876431  223457788764

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.10  E-value=0.00041  Score=57.00  Aligned_cols=23  Identities=26%  Similarity=0.452  Sum_probs=20.4

Q ss_pred             ceEEeEeccCCCCcchhHHhhhc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~  239 (316)
                      |.-|+++|.||+||||+.++|.+
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45589999999999999999985

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.10  E-value=0.00069  Score=55.19  Aligned_cols=35  Identities=26%  Similarity=0.234  Sum_probs=25.6

Q ss_pred             EeEeccCCCCcchhHHhhhcCcccccCCCCCceee
Q 021210          220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV  254 (316)
Q Consensus       220 i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~  254 (316)
                      |+++|.+|+|||||++.|.+......-..+.|||.
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~tTR~   39 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRA   39 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSC
T ss_pred             EEEECCCCCCHHHHHHHHHhhCCCCeEEEEeeccC
Confidence            78999999999999999986532222334566664

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.00077  Score=55.27  Aligned_cols=38  Identities=29%  Similarity=0.314  Sum_probs=27.5

Q ss_pred             EeEeccCCCCcchhHHhhhcCccc-ccCCCCCceeeEEE
Q 021210          220 AGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKW  257 (316)
Q Consensus       220 i~ivG~pNvGKSTLiN~L~~~~~~-~vs~~pgtT~~~~~  257 (316)
                      |+++|.+|+||+||++.|+.+... -....+.|||..+.
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~v~~TTR~~R~   44 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKK   44 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC--
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCcCeeeccccccCCCCC
Confidence            789999999999999999865422 22345678886543

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.03  E-value=0.0012  Score=55.32  Aligned_cols=20  Identities=25%  Similarity=0.383  Sum_probs=18.6

Q ss_pred             EeEeccCCCCcchhHHhhhc
Q 021210          220 AGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       220 i~ivG~pNvGKSTLiN~L~~  239 (316)
                      |+|+|++|+|||||+++|+.
T Consensus         3 i~v~G~~GsGKTTLl~~ll~   22 (244)
T d1yrba1           3 VVFVGTAGSGKTTLTGEFGR   22 (244)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEcCCCCcHHHHHHHHHH
Confidence            78999999999999999973

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.01  E-value=0.014  Score=52.24  Aligned_cols=81  Identities=10%  Similarity=0.073  Sum_probs=48.5

Q ss_pred             HhhcCeEEEEEeCCCCC--CCCcHHHHHHhCCCCEEEEEEccCCCChHhHHHHHHHHHh-----------cCceEEEecc
Q 021210          118 LKLMDVVIEVRDARIPL--STTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAK-----------QGTKVIFSNG  184 (316)
Q Consensus       118 i~~aDlIl~VvDar~~~--~~~~~~i~~~l~~k~~IlVlNK~DLv~~~~~~~~~~~~~~-----------~g~~vi~iSa  184 (316)
                      ...+|.+++|++...+.  -....-+.+    ..=++|+||+|+........-.+.+..           ...+++.+||
T Consensus       165 ~~~aD~~l~v~~P~~Gd~iq~~k~gi~e----~aDi~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA  240 (327)
T d2p67a1         165 ARMVDCFISLQIAGGGDDLQGIKKGLME----VADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSA  240 (327)
T ss_dssp             HTTCSEEEEEECC------CCCCHHHHH----HCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBG
T ss_pred             hhccceEEEEecCCCchhhhhhchhhhc----cccEEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCCcceeEEEEe
Confidence            35567777777543321  111222222    234899999998876543322222221           1146889999


Q ss_pred             ccccchhhhHHHHHHhhh
Q 021210          185 QLGMGTMKLSRLAKALAS  202 (316)
Q Consensus       185 ~~g~gi~~L~~~L~~l~~  202 (316)
                      .+|+|+++|.+.|.++..
T Consensus       241 ~~g~Gi~eL~~~I~~~~~  258 (327)
T d2p67a1         241 LEKRGIDEIWHAIIDFKT  258 (327)
T ss_dssp             GGTBSHHHHHHHHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHHH
Confidence            999999999998887654

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=95.92  E-value=0.00095  Score=52.96  Aligned_cols=23  Identities=35%  Similarity=0.458  Sum_probs=20.6

Q ss_pred             eEEeEeccCCCCcchhHHhhhcC
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      -+|+|+|.||+|||||.++|...
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            36999999999999999999753

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.81  E-value=0.0024  Score=52.18  Aligned_cols=115  Identities=15%  Similarity=0.020  Sum_probs=61.8

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChHhHHHHHHHHHhcCceEEEeccccccchhhh
Q 021210          116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKL  193 (316)
Q Consensus       116 ~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L  193 (316)
                      ..+...+..+.++|+..+.......+.++..  ..+.+++.++++.  ... .++..+....+ ...++++....+...+
T Consensus        79 ~~~~~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~  154 (213)
T d1bifa1          79 KFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVD--PEV-IAANIVQVKLG-SPDYVNRDSDEATEDF  154 (213)
T ss_dssp             HHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCC--HHH-HHHHHHHHTTT-STTTTTSCHHHHHHHH
T ss_pred             HHHHhcCCCEEEeecCCccHHHHHHHHHHHHhcCCeEEEEEeeccH--HHH-HHHhHHHHhcC-CCcccccchHHHHHHH
Confidence            3344555666788998765554445555443  5677777777762  222 11111111111 2233455555555555


Q ss_pred             HHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhc
Q 021210          194 SRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       194 ~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~  239 (316)
                      .+.+........     .-.......+.+||.+|+|||+++|.+.+
T Consensus       155 ~~~l~~~~~~~e-----~~~~~~~~~~~~I~~~n~g~~~lvn~i~g  195 (213)
T d1bifa1         155 MRRIECYENSYE-----SLDEEQDRDLSYIKIMDVGQSYVVNRVAD  195 (213)
T ss_dssp             HHHHHHHHTTCC-----CCCTTTTTTSCEEEEETTTTEEEEECCCS
T ss_pred             HHhhhhcccccc-----ccCccccCCcCeEecCCCCceeeeccccc
Confidence            554443322111     11111223357899999999999999887

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=95.80  E-value=0.0018  Score=51.29  Aligned_cols=25  Identities=28%  Similarity=0.555  Sum_probs=22.5

Q ss_pred             ccceEEeEeccCCCCcchhHHhhhc
Q 021210          215 PRAVRAGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       215 ~~~~~i~ivG~pNvGKSTLiN~L~~  239 (316)
                      |.+++|++.|.||+||||+.+.|..
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            4578899999999999999999975

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.74  E-value=0.0069  Score=55.76  Aligned_cols=83  Identities=10%  Similarity=0.059  Sum_probs=52.7

Q ss_pred             HHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChH------------h-HHH----HHHHHHhcC-
Q 021210          117 QLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMA------------D-RNA----WATYFAKQG-  176 (316)
Q Consensus       117 ~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~------------~-~~~----~~~~~~~~g-  176 (316)
                      .+.++|++|++.|.+  ++..+..+.+.+.  ++|+++|+||+|.....            . .++    ..+.+.+.+ 
T Consensus       132 ~~~~~d~~l~~~~~~--~~~~d~~l~~~l~~~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~~~  209 (400)
T d1tq4a_         132 KFYEYDFFIIISATR--FKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGI  209 (400)
T ss_dssp             TGGGCSEEEEEESSC--CCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred             hhhcceEEEEecCCC--CCHHHHHHHHHHHHcCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHHcCC
Confidence            467899999998876  4555666666654  79999999999964211            1 111    233344444 


Q ss_pred             --ceEEEecccc--ccchhhhHHHHHHhh
Q 021210          177 --TKVIFSNGQL--GMGTMKLSRLAKALA  201 (316)
Q Consensus       177 --~~vi~iSa~~--g~gi~~L~~~L~~l~  201 (316)
                        .+++.+|...  ..|+.+|.+.+.+..
T Consensus       210 ~~~~vflvS~~~~~~~d~~~L~~~l~~~L  238 (400)
T d1tq4a_         210 AEPPIFLLSNKNVCHYDFPVLMDKLISDL  238 (400)
T ss_dssp             SSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred             CCCCEEEecCCcccccCHHHHHHHHHHHh
Confidence              3467778653  346777777665543

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.72  E-value=0.0015  Score=52.17  Aligned_cols=20  Identities=30%  Similarity=0.659  Sum_probs=18.3

Q ss_pred             EeEeccCCCCcchhHHhhhc
Q 021210          220 AGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       220 i~ivG~pNvGKSTLiN~L~~  239 (316)
                      ++|+|++|+|||||++.|.+
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            57999999999999999874

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.64  E-value=0.0021  Score=57.85  Aligned_cols=24  Identities=54%  Similarity=0.833  Sum_probs=21.7

Q ss_pred             cceEEeEeccCCCCcchhHHhhhc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~  239 (316)
                      ...+|+|.|.||+||||||++|..
T Consensus        50 ~~~~igitG~pGaGKSTli~~l~~   73 (323)
T d2qm8a1          50 RAIRVGITGVPGVGKSTTIDALGS   73 (323)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEeeeCCCCCCHHHHHHHHHH
Confidence            467899999999999999999984

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.29  E-value=0.0083  Score=48.44  Aligned_cols=116  Identities=12%  Similarity=0.044  Sum_probs=63.3

Q ss_pred             cccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC------cH------HHHHHh---
Q 021210           83 WADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT------HP------LMDQWL---  145 (316)
Q Consensus        83 ~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~------~~------~i~~~l---  145 (316)
                      -+|++.....|.....+  +-+.+|+ ...........+.++.+++++|..+.....      ..      .+...+   
T Consensus        29 ~pTiG~~~~~~~~~~~~~~~~D~~gq-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  107 (200)
T d1zcba2          29 DPTKGIHEYDFEIKNVPFKMVDVGGQ-RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR  107 (200)
T ss_dssp             CCCSSEEEEEEEETTEEEEEEEECC--------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCG
T ss_pred             CCeeeeEEEEEeeeeeeeeeecccce-eeecccccccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhCh
Confidence            34666555544443333  2233444 555555556778999999999987654321      11      111222   


Q ss_pred             --CCCCEEEEEEccCCCChH------------------hHHHH----HHHHHhc-------CceEEEeccccccchhhhH
Q 021210          146 --GNRKRILVLNREDMISMA------------------DRNAW----ATYFAKQ-------GTKVIFSNGQLGMGTMKLS  194 (316)
Q Consensus       146 --~~k~~IlVlNK~DLv~~~------------------~~~~~----~~~~~~~-------g~~vi~iSa~~g~gi~~L~  194 (316)
                        .+.|+++++||+|+....                  .....    .+.|...       .+-+.++||+++.|++.+.
T Consensus       108 ~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf  187 (200)
T d1zcba2         108 VFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVF  187 (200)
T ss_dssp             GGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHH
T ss_pred             hhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHH
Confidence              367999999999975321                  11112    2223221       1234578999999998887


Q ss_pred             HHHHH
Q 021210          195 RLAKA  199 (316)
Q Consensus       195 ~~L~~  199 (316)
                      +.+.+
T Consensus       188 ~~v~d  192 (200)
T d1zcba2         188 RDVKD  192 (200)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76554

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=95.18  E-value=0.0024  Score=50.19  Aligned_cols=21  Identities=33%  Similarity=0.483  Sum_probs=19.4

Q ss_pred             EEeEeccCCCCcchhHHhhhc
Q 021210          219 RAGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~  239 (316)
                      +|+++|.||+||||+.+.|..
T Consensus         6 ~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999974

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.09  E-value=0.0066  Score=48.67  Aligned_cols=24  Identities=33%  Similarity=0.497  Sum_probs=21.1

Q ss_pred             cceEEeEeccCCCCcchhHHhhhc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~  239 (316)
                      .++-|+|.|.+|+|||||.+.|..
T Consensus        21 ~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            366799999999999999999873

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.05  E-value=0.063  Score=47.71  Aligned_cols=54  Identities=17%  Similarity=0.134  Sum_probs=37.1

Q ss_pred             CEEEEEEccCCCChHhHHH-----HHHHHHh-------cCceEEEeccccccchhhhHHHHHHhhh
Q 021210          149 KRILVLNREDMISMADRNA-----WATYFAK-------QGTKVIFSNGQLGMGTMKLSRLAKALAS  202 (316)
Q Consensus       149 ~~IlVlNK~DLv~~~~~~~-----~~~~~~~-------~g~~vi~iSa~~g~gi~~L~~~L~~l~~  202 (316)
                      .=++|+||+|+.+......     +...+..       ...+++.+||++|.|+++|.+.+.++..
T Consensus       191 aDi~vvNKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~  256 (323)
T d2qm8a1         191 ADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  256 (323)
T ss_dssp             CSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             hheeeEeccccccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence            3489999999876544222     1111111       1246899999999999999998877654

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.04  E-value=0.0024  Score=52.22  Aligned_cols=22  Identities=32%  Similarity=0.474  Sum_probs=19.8

Q ss_pred             EeEeccCCCCcchhHHhhhcCc
Q 021210          220 AGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       220 i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      |+|+|.+||||+||++.|..+.
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            7899999999999999998653

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=94.95  E-value=0.0043  Score=53.40  Aligned_cols=23  Identities=35%  Similarity=0.439  Sum_probs=21.0

Q ss_pred             EEeEeccCCCCcchhHHhhhcCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      +++|+|.+|+|||||++.|.+--
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            59999999999999999999753

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=94.81  E-value=0.0049  Score=48.41  Aligned_cols=24  Identities=25%  Similarity=0.357  Sum_probs=20.8

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcC
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      +..|.++|.||+||||+-+.|..+
T Consensus         6 g~~I~l~G~~GsGKTTia~~La~~   29 (183)
T d1m8pa3           6 GFTIFLTGYMNSGKDAIARALQVT   29 (183)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            567899999999999999988743

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=94.71  E-value=0.0053  Score=52.78  Aligned_cols=23  Identities=22%  Similarity=0.209  Sum_probs=20.9

Q ss_pred             EEeEeccCCCCcchhHHhhhcCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      .++++|.+|+|||||++.|.+--
T Consensus        30 ~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHhh
Confidence            58999999999999999999743

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.70  E-value=0.0053  Score=53.15  Aligned_cols=23  Identities=22%  Similarity=0.358  Sum_probs=20.8

Q ss_pred             EEeEeccCCCCcchhHHhhhcCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      .++++|.+|+|||||++.|.+--
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            59999999999999999998743

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.69  E-value=0.0035  Score=51.45  Aligned_cols=21  Identities=29%  Similarity=0.551  Sum_probs=19.2

Q ss_pred             EeEeccCCCCcchhHHhhhcC
Q 021210          220 AGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       220 i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      |+|+|.+||||+||.+.|...
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999764

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=94.65  E-value=0.0043  Score=50.35  Aligned_cols=24  Identities=21%  Similarity=0.325  Sum_probs=21.4

Q ss_pred             cceEEeEeccCCCCcchhHHhhhc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~  239 (316)
                      .|++|+|+|.||+||||+...|..
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            367899999999999999998864

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.64  E-value=0.0054  Score=47.40  Aligned_cols=20  Identities=25%  Similarity=0.459  Sum_probs=18.2

Q ss_pred             EeEeccCCCCcchhHHhhhc
Q 021210          220 AGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       220 i~ivG~pNvGKSTLiN~L~~  239 (316)
                      |.+.|.||+||||+.+.|..
T Consensus         5 Iii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999864

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.54  E-value=0.0062  Score=52.63  Aligned_cols=23  Identities=26%  Similarity=0.270  Sum_probs=20.9

Q ss_pred             EEeEeccCCCCcchhHHhhhcCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      .++++|.+|+|||||++.|.+--
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhccc
Confidence            58999999999999999999753

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=94.53  E-value=0.0057  Score=49.59  Aligned_cols=24  Identities=38%  Similarity=0.607  Sum_probs=21.3

Q ss_pred             cceEEeEeccCCCCcchhHHhhhc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~  239 (316)
                      .+++|+++|.||+||||+-..|..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999874

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=94.39  E-value=0.0061  Score=47.49  Aligned_cols=21  Identities=38%  Similarity=0.404  Sum_probs=19.2

Q ss_pred             EeEeccCCCCcchhHHhhhcC
Q 021210          220 AGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       220 i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      |++.|.||+||||+.+.|.+.
T Consensus         5 I~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999854

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.28  E-value=0.0075  Score=52.98  Aligned_cols=23  Identities=30%  Similarity=0.372  Sum_probs=20.8

Q ss_pred             EEeEeccCCCCcchhHHhhhcCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      .++|+|.+|+|||||++.|.|--
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            48999999999999999999753

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=94.26  E-value=0.0069  Score=52.51  Aligned_cols=23  Identities=35%  Similarity=0.436  Sum_probs=20.9

Q ss_pred             EEeEeccCCCCcchhHHhhhcCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      +++++|.+|+|||||++.|.+--
T Consensus        46 ~vaivG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHhcC
Confidence            58999999999999999999753

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.24  E-value=0.0072  Score=47.70  Aligned_cols=20  Identities=20%  Similarity=0.388  Sum_probs=18.2

Q ss_pred             EeEeccCCCCcchhHHhhhc
Q 021210          220 AGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       220 i~ivG~pNvGKSTLiN~L~~  239 (316)
                      |+|.|.||+||||+.+.|..
T Consensus         4 I~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999863

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.24  E-value=0.0075  Score=50.21  Aligned_cols=23  Identities=17%  Similarity=0.300  Sum_probs=20.6

Q ss_pred             EEeEeccCCCCcchhHHhhhcCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      .++++|..|+|||||++.|.+--
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            38999999999999999999753

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.12  E-value=0.0073  Score=47.92  Aligned_cols=21  Identities=48%  Similarity=0.705  Sum_probs=18.9

Q ss_pred             EEeEeccCCCCcchhHHhhhc
Q 021210          219 RAGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~  239 (316)
                      +|+++|.|||||||+-+.|..
T Consensus         3 ~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999864

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.09  E-value=0.0083  Score=51.21  Aligned_cols=23  Identities=26%  Similarity=0.288  Sum_probs=20.6

Q ss_pred             EEeEeccCCCCcchhHHhhhcCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      .++++|.+|+|||||++.|.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCcchhhHhccCCC
Confidence            48999999999999999998754

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.06  E-value=0.0075  Score=48.11  Aligned_cols=22  Identities=18%  Similarity=0.510  Sum_probs=19.5

Q ss_pred             eEEeEeccCCCCcchhHHhhhc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~  239 (316)
                      ++|+++|.||+||||+...|..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998864

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.93  E-value=0.0092  Score=50.98  Aligned_cols=23  Identities=26%  Similarity=0.290  Sum_probs=20.5

Q ss_pred             EEeEeccCCCCcchhHHhhhcCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      .++++|.+|+|||||+|.|.+-.
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            38999999999999999998743

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=93.77  E-value=0.008  Score=46.16  Aligned_cols=22  Identities=27%  Similarity=0.327  Sum_probs=19.3

Q ss_pred             EEeEeccCCCCcchhHHhhhcC
Q 021210          219 RAGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      .|.++|.||+||||+-..|..+
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999999753

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.74  E-value=0.0097  Score=46.67  Aligned_cols=20  Identities=35%  Similarity=0.587  Sum_probs=18.6

Q ss_pred             EeEeccCCCCcchhHHhhhc
Q 021210          220 AGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       220 i~ivG~pNvGKSTLiN~L~~  239 (316)
                      |.+.|.||+|||||+..+..
T Consensus         4 v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           4 VFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             EEEESCCSSCHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78999999999999999874

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=93.72  E-value=0.011  Score=50.70  Aligned_cols=23  Identities=17%  Similarity=0.281  Sum_probs=20.8

Q ss_pred             EEeEeccCCCCcchhHHhhhcCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      -++++|..|+|||||+|+|.+..
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            37999999999999999999864

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=93.68  E-value=0.012  Score=46.27  Aligned_cols=21  Identities=29%  Similarity=0.395  Sum_probs=19.1

Q ss_pred             EeEeccCCCCcchhHHhhhcC
Q 021210          220 AGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       220 i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      |++.|.||+||||+.+.|.++
T Consensus         7 I~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999754

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.66  E-value=0.011  Score=50.71  Aligned_cols=23  Identities=13%  Similarity=0.187  Sum_probs=20.6

Q ss_pred             EEeEeccCCCCcchhHHhhhcCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      .++++|.+|+|||||++.|.+-.
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            38999999999999999999753

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=93.65  E-value=0.0093  Score=50.77  Aligned_cols=22  Identities=32%  Similarity=0.422  Sum_probs=20.2

Q ss_pred             EEeEeccCCCCcchhHHhhhcC
Q 021210          219 RAGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      -++++|..|+|||||+|.|.+-
T Consensus        27 i~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            3899999999999999999974

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=93.63  E-value=0.011  Score=50.58  Aligned_cols=23  Identities=13%  Similarity=0.254  Sum_probs=20.8

Q ss_pred             EEeEeccCCCCcchhHHhhhcCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      -++++|..|+|||||+|+|.+-.
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            38999999999999999999854

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=93.60  E-value=0.013  Score=47.86  Aligned_cols=24  Identities=42%  Similarity=0.721  Sum_probs=21.5

Q ss_pred             cceEEeEeccCCCCcchhHHhhhc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~  239 (316)
                      +.++|+++|.||+||||+-..|..
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             cceeEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999975

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.60  E-value=0.014  Score=46.96  Aligned_cols=25  Identities=32%  Similarity=0.490  Sum_probs=21.3

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcC
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      .|.-|+++|.||+||||+...|...
T Consensus        13 ~p~liil~G~pGsGKST~a~~l~~~   37 (172)
T d1yj5a2          13 NPEVVVAVGFPGAGKSTFIQEHLVS   37 (172)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            4556899999999999999998754

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=93.52  E-value=0.011  Score=47.57  Aligned_cols=23  Identities=22%  Similarity=0.603  Sum_probs=20.1

Q ss_pred             eEEeEeccCCCCcchhHHhhhcC
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      ++|.|+|.||+||||+...|..+
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999988753

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=93.47  E-value=0.015  Score=47.00  Aligned_cols=24  Identities=17%  Similarity=0.342  Sum_probs=20.8

Q ss_pred             cceEEeEeccCCCCcchhHHhhhc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~  239 (316)
                      .|..|+++|.||+||||+...|..
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            355689999999999999999874

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=93.46  E-value=0.012  Score=50.38  Aligned_cols=23  Identities=30%  Similarity=0.407  Sum_probs=20.8

Q ss_pred             EEeEeccCCCCcchhHHhhhcCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      -++++|.+|+|||||++.|.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHcCCc
Confidence            38999999999999999999754

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=93.44  E-value=0.012  Score=46.64  Aligned_cols=21  Identities=33%  Similarity=0.499  Sum_probs=18.6

Q ss_pred             EEeEeccCCCCcchhHHhhhc
Q 021210          219 RAGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~  239 (316)
                      +|+++|.||+||||+-..|.+
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            389999999999999999864

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=93.42  E-value=0.012  Score=46.49  Aligned_cols=20  Identities=30%  Similarity=0.630  Sum_probs=17.4

Q ss_pred             EeEeccCCCCcchhHHhhhc
Q 021210          220 AGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       220 i~ivG~pNvGKSTLiN~L~~  239 (316)
                      |+|.|.||+||||+++.|..
T Consensus         4 ivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           4 GIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            46789999999999999953

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.30  E-value=0.019  Score=48.40  Aligned_cols=24  Identities=25%  Similarity=0.365  Sum_probs=20.6

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcC
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      |.-|.+.|.||+|||||..+|.+.
T Consensus        32 P~~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          32 PTAFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            445899999999999999999754

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=93.28  E-value=0.053  Score=46.50  Aligned_cols=23  Identities=26%  Similarity=0.348  Sum_probs=20.1

Q ss_pred             eEEeEeccCCCCcchhHHhhhcC
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      --+.+.|.||+|||+++++|.+.
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHHHH
Confidence            34899999999999999999853

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=93.23  E-value=0.014  Score=50.00  Aligned_cols=23  Identities=13%  Similarity=0.177  Sum_probs=20.7

Q ss_pred             EEeEeccCCCCcchhHHhhhcCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      .++++|.+|+|||||++.|.+-.
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            38999999999999999998754

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=93.22  E-value=0.0092  Score=50.89  Aligned_cols=23  Identities=17%  Similarity=0.192  Sum_probs=20.7

Q ss_pred             EEeEeccCCCCcchhHHhhhcCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      -++++|.+|+|||||++.|.+-.
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            38999999999999999999754

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.11  E-value=0.015  Score=49.81  Aligned_cols=22  Identities=18%  Similarity=0.252  Sum_probs=20.0

Q ss_pred             EeEeccCCCCcchhHHhhhcCc
Q 021210          220 AGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       220 i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      ++++|.+|+|||||++.|.+-.
T Consensus        27 ~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          27 CVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCChHHHHHHHHHcCC
Confidence            6899999999999999999754

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.06  E-value=0.018  Score=46.19  Aligned_cols=23  Identities=26%  Similarity=0.504  Sum_probs=20.6

Q ss_pred             ceEEeEeccCCCCcchhHHhhhc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~  239 (316)
                      .++|.|+|.||+||||+...|..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999964

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.05  E-value=0.016  Score=50.01  Aligned_cols=22  Identities=36%  Similarity=0.359  Sum_probs=20.5

Q ss_pred             EeEeccCCCCcchhHHhhhcCc
Q 021210          220 AGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       220 i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      ++++|..|+|||||+|+|.+-.
T Consensus        33 ~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          33 TLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCcHHHHHHHHHCCC
Confidence            7999999999999999999864

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=93.02  E-value=0.015  Score=45.38  Aligned_cols=21  Identities=24%  Similarity=0.259  Sum_probs=18.8

Q ss_pred             EeEeccCCCCcchhHHhhhcC
Q 021210          220 AGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       220 i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      |++.|.||+||||+.+.|.+.
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            677899999999999999864

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.01  E-value=0.0095  Score=47.70  Aligned_cols=23  Identities=17%  Similarity=0.278  Sum_probs=20.3

Q ss_pred             ceEEeEeccCCCCcchhHHhhhc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~  239 (316)
                      +..|.++|.||+||||+-+.|..
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            56688999999999999999963

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.96  E-value=0.027  Score=45.00  Aligned_cols=93  Identities=12%  Similarity=0.056  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHhhcCeEEEEEeCCCCCCC------CcH------HHHHHh-----CCCCEEEEEEccCCCChHh------
Q 021210          108 AKTEKELKDQLKLMDVVIEVRDARIPLST------THP------LMDQWL-----GNRKRILVLNREDMISMAD------  164 (316)
Q Consensus       108 ~~~~r~l~~~i~~aDlIl~VvDar~~~~~------~~~------~i~~~l-----~~k~~IlVlNK~DLv~~~~------  164 (316)
                      ..+..........++.+++++|..+....      ...      .+...+     .+.+++++.||+|+.....      
T Consensus        56 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~  135 (200)
T d2bcjq2          56 RSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLV  135 (200)
T ss_dssp             TTGGGGGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHH
T ss_pred             ccccccccccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHH
Confidence            33444444567889999999998764321      111      122222     3678999999999742210      


Q ss_pred             ------------HHH----HHHHHHhcC------ceEEEeccccccchhhhHHHHHHh
Q 021210          165 ------------RNA----WATYFAKQG------TKVIFSNGQLGMGTMKLSRLAKAL  200 (316)
Q Consensus       165 ------------~~~----~~~~~~~~g------~~vi~iSa~~g~gi~~L~~~L~~l  200 (316)
                                  ...    ....+....      +.++++||++|.|++++.+.+.+.
T Consensus       136 ~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~  193 (200)
T d2bcjq2         136 DYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDT  193 (200)
T ss_dssp             HHSTTCCSCSSCHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             HhcccccCCchhHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHH
Confidence                        111    111222211      336689999999999988776554

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.92  E-value=0.021  Score=46.01  Aligned_cols=25  Identities=24%  Similarity=0.296  Sum_probs=22.3

Q ss_pred             cceEEeEeccCCCCcchhHHhhhcC
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      .|+-|+|-|..|+||||+++.|.+.
T Consensus         8 kp~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1           8 QPFTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHH
Confidence            4677999999999999999999864

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=92.90  E-value=0.015  Score=46.44  Aligned_cols=22  Identities=23%  Similarity=0.442  Sum_probs=19.4

Q ss_pred             eEEeEeccCCCCcchhHHhhhc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~  239 (316)
                      ++|+|+|.||+||||+.+.|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999988864

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.83  E-value=0.018  Score=49.88  Aligned_cols=23  Identities=22%  Similarity=0.296  Sum_probs=20.7

Q ss_pred             EEeEeccCCCCcchhHHhhhcCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      .++++|.+|+|||||+++|.+-.
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            48999999999999999999754

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.79  E-value=0.019  Score=45.84  Aligned_cols=22  Identities=27%  Similarity=0.486  Sum_probs=19.7

Q ss_pred             eEEeEeccCCCCcchhHHhhhc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~  239 (316)
                      ++|.|+|.||+||||+-..|..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999864

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=92.75  E-value=0.035  Score=46.26  Aligned_cols=21  Identities=24%  Similarity=0.455  Sum_probs=19.2

Q ss_pred             EEeEeccCCCCcchhHHhhhc
Q 021210          219 RAGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~  239 (316)
                      .+.|.|.||+||||+.+++.+
T Consensus        37 ~~Ll~GPpG~GKTtla~~la~   57 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLAHVIAH   57 (239)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999985

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.60  E-value=0.019  Score=46.29  Aligned_cols=23  Identities=22%  Similarity=0.433  Sum_probs=20.3

Q ss_pred             ceEEeEeccCCCCcchhHHhhhc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~  239 (316)
                      |+.|+|+|.||+||||.-..|..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999988864

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=92.47  E-value=0.02  Score=44.77  Aligned_cols=20  Identities=20%  Similarity=0.348  Sum_probs=18.2

Q ss_pred             EeEeccCCCCcchhHHhhhc
Q 021210          220 AGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       220 i~ivG~pNvGKSTLiN~L~~  239 (316)
                      ++++|.||+||||+.+.|.+
T Consensus         9 ivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           9 YVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             EEEECSTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67899999999999999875

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.31  E-value=0.033  Score=44.18  Aligned_cols=96  Identities=13%  Similarity=0.030  Sum_probs=55.9

Q ss_pred             ccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc------H------HHHHHh-----CCCCEEEEEEccCCCChH--
Q 021210          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH------P------LMDQWL-----GNRKRILVLNREDMISMA--  163 (316)
Q Consensus       103 ~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~------~------~i~~~l-----~~k~~IlVlNK~DLv~~~--  163 (316)
                      ..|. .++..........++.+++|+|..+..+...      .      .+...+     ...|++++.||+|+....  
T Consensus        49 ~~Gq-~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~  127 (195)
T d1svsa1          49 VGGQ-RSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIK  127 (195)
T ss_dssp             ECCS-GGGGGGGGGGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTT
T ss_pred             cccc-cccccchhhcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhcc
Confidence            3443 4444444566789999999999865432211      1      111222     246899999999963211  


Q ss_pred             ---------------hHHHH----HHHHHhc-------CceEEEeccccccchhhhHHHHHH
Q 021210          164 ---------------DRNAW----ATYFAKQ-------GTKVIFSNGQLGMGTMKLSRLAKA  199 (316)
Q Consensus       164 ---------------~~~~~----~~~~~~~-------g~~vi~iSa~~g~gi~~L~~~L~~  199 (316)
                                     ...+.    ...+.+.       .+.++++||++|.|++++.+.+.+
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~  189 (195)
T d1svsa1         128 KSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTD  189 (195)
T ss_dssp             TSCGGGTCTTCCSCSSHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             chHHHHHhhhhcCcccHHHHHHHHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHH
Confidence                           11111    1122221       134567999999999988776654

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.09  E-value=0.03  Score=45.86  Aligned_cols=23  Identities=26%  Similarity=0.449  Sum_probs=20.5

Q ss_pred             ceEEeEeccCCCCcchhHHhhhc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~  239 (316)
                      |+-|+|.|.+++|||||-+.|..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            67799999999999999998853

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.01  E-value=0.013  Score=50.33  Aligned_cols=23  Identities=26%  Similarity=0.470  Sum_probs=20.8

Q ss_pred             EEeEeccCCCCcchhHHhhhcCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      .++++|.+|+|||||++.|.+-.
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            48999999999999999999754

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=91.87  E-value=0.027  Score=44.62  Aligned_cols=20  Identities=20%  Similarity=0.260  Sum_probs=18.1

Q ss_pred             EeEeccCCCCcchhHHhhhc
Q 021210          220 AGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       220 i~ivG~pNvGKSTLiN~L~~  239 (316)
                      |.++|.||+||||+-+.|..
T Consensus         5 Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999964

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=91.70  E-value=0.053  Score=48.19  Aligned_cols=22  Identities=18%  Similarity=0.336  Sum_probs=20.1

Q ss_pred             EEeEeccCCCCcchhHHhhhcC
Q 021210          219 RAGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      +|+|+|.+|+||||++|+|++.
T Consensus       168 nili~G~tgSGKTT~l~al~~~  189 (323)
T d1g6oa_         168 NVIVCGGTGSGKTTYIKSIMEF  189 (323)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGG
T ss_pred             CEEEEeeccccchHHHHHHhhh
Confidence            4899999999999999999963

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=90.79  E-value=0.079  Score=45.07  Aligned_cols=23  Identities=30%  Similarity=0.407  Sum_probs=20.1

Q ss_pred             eEEeEeccCCCCcchhHHhhhcC
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      --+.+.|.||+|||++.++|.+.
T Consensus        43 ~giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHHH
Confidence            34899999999999999999853

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.78  E-value=0.081  Score=43.99  Aligned_cols=22  Identities=23%  Similarity=0.409  Sum_probs=19.8

Q ss_pred             EEeEeccCCCCcchhHHhhhcC
Q 021210          219 RAGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      .+.+.|.||+||||++.+|.+.
T Consensus        54 ~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          54 AAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999864

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=90.55  E-value=0.087  Score=43.64  Aligned_cols=22  Identities=32%  Similarity=0.620  Sum_probs=19.6

Q ss_pred             eEEeEeccCCCCcchhHHhhhc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~  239 (316)
                      -.+.|.|.||+|||++++.|.+
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~   65 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWE   65 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999999874

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=90.39  E-value=0.097  Score=43.27  Aligned_cols=22  Identities=23%  Similarity=0.446  Sum_probs=19.4

Q ss_pred             EEeEeccCCCCcchhHHhhhcC
Q 021210          219 RAGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      .+.|.|.||+||||+.+.|.+.
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHhc
Confidence            3789999999999999999853

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=90.05  E-value=0.064  Score=42.98  Aligned_cols=24  Identities=29%  Similarity=0.380  Sum_probs=20.9

Q ss_pred             cceEEeEeccCCCCcchhHHhhhc
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~~  239 (316)
                      .|+-|++.|.+++||||+.+.|..
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            367799999999999999998864

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=90.02  E-value=0.091  Score=44.56  Aligned_cols=23  Identities=26%  Similarity=0.469  Sum_probs=20.2

Q ss_pred             eEEeEeccCCCCcchhHHhhhcC
Q 021210          218 VRAGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      ..|.+.|.||+|||++.++|.+.
T Consensus        41 ~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhhc
Confidence            35899999999999999999753

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=89.79  E-value=0.08  Score=43.98  Aligned_cols=21  Identities=24%  Similarity=0.200  Sum_probs=19.1

Q ss_pred             EEeEeccCCCCcchhHHhhhc
Q 021210          219 RAGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~  239 (316)
                      .+.+.|.||+|||++.++|.+
T Consensus        55 ~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          55 CLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             EEEEESCGGGCHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHH
Confidence            589999999999999999875

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=89.55  E-value=0.074  Score=43.95  Aligned_cols=23  Identities=26%  Similarity=0.327  Sum_probs=20.2

Q ss_pred             ceEEeEeccCCCCcchhHHhhhc
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~  239 (316)
                      +.-|.|.|.||+|||||-+.|..
T Consensus        24 g~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          24 GLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45699999999999999999863

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.30  E-value=0.11  Score=44.17  Aligned_cols=21  Identities=19%  Similarity=0.308  Sum_probs=19.3

Q ss_pred             EEeEeccCCCCcchhHHhhhc
Q 021210          219 RAGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~  239 (316)
                      -+.+.|.||+|||++++++.+
T Consensus        40 giLL~GppGtGKT~l~~ala~   60 (258)
T d1e32a2          40 GILLYGPPGTGKTLIARAVAN   60 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEecCCCCCchHHHHHHHH
Confidence            489999999999999999985

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.14  E-value=0.055  Score=43.60  Aligned_cols=21  Identities=29%  Similarity=0.464  Sum_probs=19.1

Q ss_pred             EEeEeccCCCCcchhHHhhhc
Q 021210          219 RAGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~  239 (316)
                      -|+|+|.||+||||+...|.+
T Consensus        10 iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_          10 VIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999999975

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.12  E-value=0.054  Score=43.66  Aligned_cols=22  Identities=23%  Similarity=0.442  Sum_probs=19.3

Q ss_pred             EEeEeccCCCCcchhHHhhhcC
Q 021210          219 RAGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      -|.++|.||+||||+...|..+
T Consensus        10 iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_          10 IIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4889999999999999999753

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.88  E-value=0.079  Score=44.21  Aligned_cols=21  Identities=24%  Similarity=0.594  Sum_probs=18.8

Q ss_pred             EeEeccCCCCcchhHHhhhcC
Q 021210          220 AGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       220 i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      ..|.|+-|+|||||+|.|++.
T Consensus         6 ~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           6 TLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEeeCCCCCHHHHHHHHHhc
Confidence            578899999999999999864

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.68  E-value=0.075  Score=42.88  Aligned_cols=21  Identities=29%  Similarity=0.438  Sum_probs=18.8

Q ss_pred             EEeEeccCCCCcchhHHhhhc
Q 021210          219 RAGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~  239 (316)
                      -|+|-|..|+||||+++.|.+
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            388999999999999999874

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=88.67  E-value=0.1  Score=43.12  Aligned_cols=20  Identities=30%  Similarity=0.429  Sum_probs=18.1

Q ss_pred             EeEeccCCCCcchhHHhhhc
Q 021210          220 AGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       220 i~ivG~pNvGKSTLiN~L~~  239 (316)
                      +++.|.+|+|||||++.+..
T Consensus        32 i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          32 TLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEcCCCCcHHHHHHHHHH
Confidence            78999999999999998864

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=88.59  E-value=0.14  Score=42.57  Aligned_cols=21  Identities=33%  Similarity=0.544  Sum_probs=17.8

Q ss_pred             EeEeccCCCCcchhHHhhhcC
Q 021210          220 AGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       220 i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      +.+.|.||+|||++++++.+.
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            456799999999999999853

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=88.19  E-value=0.14  Score=42.18  Aligned_cols=22  Identities=32%  Similarity=0.693  Sum_probs=19.6

Q ss_pred             EEeEeccCCCCcchhHHhhhcC
Q 021210          219 RAGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      ++.+||.||||||+++..|..+
T Consensus        45 n~lLvG~pGVGKTalv~~LA~r   66 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEecCCcccHHHHHHHHHH
Confidence            5899999999999999998853

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=88.02  E-value=0.14  Score=44.25  Aligned_cols=22  Identities=32%  Similarity=0.438  Sum_probs=19.7

Q ss_pred             EEeEeccCCCCcchhHHhhhcC
Q 021210          219 RAGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      ++++||.||||||+++..|..+
T Consensus        41 n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          41 NPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEECCCCCcHHHHHHHHHHH
Confidence            5899999999999999999853

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=86.93  E-value=0.032  Score=43.86  Aligned_cols=19  Identities=21%  Similarity=0.371  Sum_probs=17.1

Q ss_pred             EeEeccCCCCcchhHHhhh
Q 021210          220 AGIVGYPNVGKSSLINRLL  238 (316)
Q Consensus       220 i~ivG~pNvGKSTLiN~L~  238 (316)
                      .+|+|..|+||||++.+|.
T Consensus        27 tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHSCCSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3688999999999999985

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.55  E-value=0.12  Score=42.43  Aligned_cols=22  Identities=32%  Similarity=0.425  Sum_probs=19.9

Q ss_pred             EEeEeccCCCCcchhHHhhhcC
Q 021210          219 RAGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      .|+|-|..|+||||+++.|.+.
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999863

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=86.44  E-value=0.21  Score=40.88  Aligned_cols=21  Identities=29%  Similarity=0.377  Sum_probs=19.0

Q ss_pred             EEeEeccCCCCcchhHHhhhc
Q 021210          219 RAGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~  239 (316)
                      .+.+.|.||+||||++..|.+
T Consensus        47 ~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            378999999999999999875

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=85.78  E-value=1.1  Score=38.27  Aligned_cols=64  Identities=14%  Similarity=0.240  Sum_probs=41.6

Q ss_pred             cccccchHH------------HHHHHHHHHHhhcCe-EEEEEeCCCCCCC-CcHHHHHHhC--CCCEEEEEEccCCCChH
Q 021210          100 VQWYPGHIA------------KTEKELKDQLKLMDV-VIEVRDARIPLST-THPLMDQWLG--NRKRILVLNREDMISMA  163 (316)
Q Consensus       100 i~~~Pgh~~------------~~~r~l~~~i~~aDl-Il~VvDar~~~~~-~~~~i~~~l~--~k~~IlVlNK~DLv~~~  163 (316)
                      +.++||...            ...+.+...+.+++. ++.|+++...... ....+.+.+.  ..+.++|+||+|.....
T Consensus       135 iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~~~~r~i~Vitk~D~~~~~  214 (306)
T d1jwyb_         135 LVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKG  214 (306)
T ss_dssp             EEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSS
T ss_pred             EecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHhCcCCCeEEEEEeccccccch
Confidence            778898532            233455567888886 5555676655433 3345555554  46899999999998654

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=85.35  E-value=0.17  Score=44.43  Aligned_cols=24  Identities=29%  Similarity=0.214  Sum_probs=21.3

Q ss_pred             ccceEEeEeccCCCCcchhHHhhh
Q 021210          215 PRAVRAGIVGYPNVGKSSLINRLL  238 (316)
Q Consensus       215 ~~~~~i~ivG~pNvGKSTLiN~L~  238 (316)
                      ..|+-|+|.|.+++||||+-+.|.
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~  101 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHH
Confidence            457889999999999999988886

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=85.08  E-value=0.16  Score=43.25  Aligned_cols=18  Identities=39%  Similarity=0.641  Sum_probs=16.4

Q ss_pred             EeEeccCCCCcchhHHhh
Q 021210          220 AGIVGYPNVGKSSLINRL  237 (316)
Q Consensus       220 i~ivG~pNvGKSTLiN~L  237 (316)
                      -+++|..|+||||++.+|
T Consensus        27 nvlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          27 TAIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             EEEECCTTTCSTHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHH
Confidence            368899999999999988

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.94  E-value=0.37  Score=41.81  Aligned_cols=23  Identities=17%  Similarity=0.017  Sum_probs=20.3

Q ss_pred             cceEEeEeccCCCCcchhHHhhh
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLL  238 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~  238 (316)
                      .|+-|+|.|.+|+|||||-+.|.
T Consensus        26 ~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          26 CPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCEEEEeECCCCCCHHHHHHHHH
Confidence            47789999999999999988775

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=84.76  E-value=0.15  Score=41.42  Aligned_cols=20  Identities=25%  Similarity=0.341  Sum_probs=18.3

Q ss_pred             EeEeccCCCCcchhHHhhhc
Q 021210          220 AGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       220 i~ivG~pNvGKSTLiN~L~~  239 (316)
                      |+|-|..|+||||+++.|.+
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78889999999999999874

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=84.16  E-value=0.23  Score=41.33  Aligned_cols=23  Identities=22%  Similarity=0.294  Sum_probs=19.6

Q ss_pred             cceEEeEeccCCCCcchhHHhhh
Q 021210          216 RAVRAGIVGYPNVGKSSLINRLL  238 (316)
Q Consensus       216 ~~~~i~ivG~pNvGKSTLiN~L~  238 (316)
                      .|.-|+++|.+||||||.+-.|.
T Consensus        10 ~p~vi~lvGptGvGKTTTiAKLA   32 (213)
T d1vmaa2          10 PPFVIMVVGVNGTGKTTSCGKLA   32 (213)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            35568999999999999987775

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.00  E-value=0.2  Score=41.05  Aligned_cols=21  Identities=24%  Similarity=0.317  Sum_probs=18.3

Q ss_pred             EEeEeccCCCCcchhHHhhhc
Q 021210          219 RAGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~  239 (316)
                      -|+|-|..|+||||+++.|.+
T Consensus         5 lI~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           5 LIVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            378889999999999988864

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=83.88  E-value=0.17  Score=41.00  Aligned_cols=24  Identities=25%  Similarity=0.378  Sum_probs=20.5

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcC
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      .+.|+|-|.||+||||+-..|..+
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La~~   26 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIAKD   26 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            356889999999999999999753

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.47  E-value=0.17  Score=43.13  Aligned_cols=22  Identities=23%  Similarity=0.327  Sum_probs=19.8

Q ss_pred             EEeEeccCCCCcchhHHhhhcC
Q 021210          219 RAGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      -|.+.|.||+|||+|++++.+.
T Consensus        43 giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          43 GVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             EEEEBCCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcchhHHHHHHHH
Confidence            4899999999999999999754

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=83.47  E-value=0.25  Score=41.05  Aligned_cols=22  Identities=32%  Similarity=0.439  Sum_probs=19.4

Q ss_pred             ceEEeEeccCCCCcchhHHhhh
Q 021210          217 AVRAGIVGYPNVGKSSLINRLL  238 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~  238 (316)
                      |.-|+++|.+||||||.+-.|.
T Consensus         9 p~vi~lvGptGvGKTTTiAKLA   30 (211)
T d2qy9a2           9 PFVILMVGVNGVGKTTTIGKLA   30 (211)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            4558999999999999998886

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.09  E-value=0.25  Score=40.60  Aligned_cols=22  Identities=41%  Similarity=0.498  Sum_probs=19.8

Q ss_pred             eEEeEeccCCCCcchhHHhhhc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~  239 (316)
                      --|+|=|..|+||||+++.|..
T Consensus         3 k~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHH
Confidence            3589999999999999999975

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=83.06  E-value=0.29  Score=40.54  Aligned_cols=22  Identities=23%  Similarity=0.320  Sum_probs=15.1

Q ss_pred             ceEEeEeccCCCCcchhHHhhh
Q 021210          217 AVRAGIVGYPNVGKSSLINRLL  238 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~  238 (316)
                      |--|+++|.+||||+|.+=.|.
T Consensus        12 p~vi~lvGptGvGKTTTiAKLA   33 (211)
T d1j8yf2          12 PYVIMLVGVQGTGKATTAGKLA   33 (211)
T ss_dssp             SEEEEEECSCCC----HHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            5568999999999999988776

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=83.04  E-value=0.3  Score=43.76  Aligned_cols=21  Identities=29%  Similarity=0.254  Sum_probs=19.1

Q ss_pred             EEeEeccCCCCcchhHHhhhc
Q 021210          219 RAGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~  239 (316)
                      .+.+.|.||+|||++.++|.+
T Consensus       156 ~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         156 YWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999999874

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=82.84  E-value=0.21  Score=40.66  Aligned_cols=22  Identities=23%  Similarity=0.262  Sum_probs=19.1

Q ss_pred             EEeEeccCCCCcchhHHhhhcC
Q 021210          219 RAGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      -|++.|.+|+||||+.+.|...
T Consensus         5 iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCcCCHHHHHHHHHHC
Confidence            3899999999999999988643

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.31  E-value=0.32  Score=39.99  Aligned_cols=21  Identities=24%  Similarity=0.227  Sum_probs=18.9

Q ss_pred             EEeEeccCCCCcchhHHhhhc
Q 021210          219 RAGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~  239 (316)
                      .+.+.|.||+||||++.++.+
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~   55 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLE   55 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            378999999999999999875

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=82.25  E-value=0.5  Score=40.25  Aligned_cols=22  Identities=23%  Similarity=0.255  Sum_probs=19.1

Q ss_pred             EEeEeccCCCCcchhHHhhhcC
Q 021210          219 RAGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      -|++.|+.|+|||||...+.+.
T Consensus        46 ~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          46 FLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            4789999999999999887653

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=82.22  E-value=0.22  Score=40.27  Aligned_cols=22  Identities=23%  Similarity=0.371  Sum_probs=19.6

Q ss_pred             EeEeccCCCCcchhHHhhhcCc
Q 021210          220 AGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       220 i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      |.|.|.+|+||||+...|..+.
T Consensus        18 vli~G~sG~GKS~lal~l~~~G   39 (177)
T d1knxa2          18 VLLTGRSGIGKSECALDLINKN   39 (177)
T ss_dssp             EEEEESSSSSHHHHHHHHHTTT
T ss_pred             EEEEcCCCCCHHHHHHHHHHcC
Confidence            7999999999999999988643

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=82.01  E-value=0.3  Score=40.35  Aligned_cols=21  Identities=33%  Similarity=0.384  Sum_probs=18.1

Q ss_pred             eEEeEeccCCCCcchhHHhhh
Q 021210          218 VRAGIVGYPNVGKSSLINRLL  238 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~  238 (316)
                      --++++|.+||||+|.+=.|.
T Consensus         7 ~vi~lvGptGvGKTTTiaKLA   27 (207)
T d1okkd2           7 RVVLVVGVNGVGKTTTIAKLG   27 (207)
T ss_dssp             SEEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            357999999999999987775

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=81.98  E-value=0.2  Score=40.24  Aligned_cols=21  Identities=24%  Similarity=0.328  Sum_probs=18.6

Q ss_pred             EeEeccCCCCcchhHHhhhcC
Q 021210          220 AGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       220 i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      |+|.|.||+||||+-..|.++
T Consensus         6 I~I~GppGSGKgT~ak~La~~   26 (225)
T d1ckea_           6 ITIDGPSGAGKGTLCKAMAEA   26 (225)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            788899999999999988753

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=81.66  E-value=0.31  Score=43.15  Aligned_cols=24  Identities=21%  Similarity=0.360  Sum_probs=21.3

Q ss_pred             ceEEeEeccCCCCcchhHHhhhcC
Q 021210          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       217 ~~~i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      -++|+|=|.-|+||||+++.|.+.
T Consensus         5 ~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           5 VLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            367999999999999999999754

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=81.60  E-value=0.22  Score=40.23  Aligned_cols=21  Identities=38%  Similarity=0.433  Sum_probs=19.0

Q ss_pred             EeEeccCCCCcchhHHhhhcC
Q 021210          220 AGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       220 i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      |+|.|.+|+||||+.-.|..+
T Consensus        17 vl~~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_          17 VLITGDSGVGKSETALELVQR   37 (176)
T ss_dssp             EEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEeCCCCCHHHHHHHHHHc
Confidence            799999999999999988754

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=81.45  E-value=0.26  Score=39.41  Aligned_cols=23  Identities=35%  Similarity=0.401  Sum_probs=19.5

Q ss_pred             EEeEeccCCCCcchhHHhhhcCc
Q 021210          219 RAGIVGYPNVGKSSLINRLLKRR  241 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~~~  241 (316)
                      =|+|.|.+|+||||+.-.|..+.
T Consensus        17 gvli~G~sg~GKS~la~~l~~~g   39 (169)
T d1ko7a2          17 GVLITGDSGIGKSETALELIKRG   39 (169)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHcC
Confidence            38999999999999998877543

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=81.40  E-value=0.28  Score=39.75  Aligned_cols=22  Identities=23%  Similarity=0.350  Sum_probs=19.1

Q ss_pred             eEEeEeccCCCCcchhHHhhhc
Q 021210          218 VRAGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       218 ~~i~ivG~pNvGKSTLiN~L~~  239 (316)
                      .-|++.|.+++||||+.+.|..
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3489999999999999998864

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=81.35  E-value=0.24  Score=43.13  Aligned_cols=21  Identities=33%  Similarity=0.518  Sum_probs=19.1

Q ss_pred             EEeEeccCCCCcchhHHhhhc
Q 021210          219 RAGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~  239 (316)
                      .+.++|.|||||+.|.++|.+
T Consensus        51 ~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          51 NILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHhh
Confidence            378999999999999999975

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.20  E-value=0.42  Score=38.78  Aligned_cols=21  Identities=33%  Similarity=0.400  Sum_probs=18.8

Q ss_pred             EeEeccCCCCcchhHHhhhcC
Q 021210          220 AGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       220 i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      +.+.|.||+||||++..|.+.
T Consensus        38 lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHHHH
Confidence            789999999999999999753

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.13  E-value=0.26  Score=40.23  Aligned_cols=21  Identities=38%  Similarity=0.401  Sum_probs=18.8

Q ss_pred             EeEeccCCCCcchhHHhhhcC
Q 021210          220 AGIVGYPNVGKSSLINRLLKR  240 (316)
Q Consensus       220 i~ivG~pNvGKSTLiN~L~~~  240 (316)
                      +.|.|.||+||||++.+|.++
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHH
Confidence            789999999999999998753

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=81.01  E-value=0.28  Score=40.51  Aligned_cols=19  Identities=26%  Similarity=0.336  Sum_probs=17.6

Q ss_pred             EeEeccCCCCcchhHHhhh
Q 021210          220 AGIVGYPNVGKSSLINRLL  238 (316)
Q Consensus       220 i~ivG~pNvGKSTLiN~L~  238 (316)
                      ++++|.+||||||.+-.|.
T Consensus        13 i~lvGp~GvGKTTTiaKLA   31 (207)
T d1ls1a2          13 WFLVGLQGSGKTTTAAKLA   31 (207)
T ss_dssp             EEEECCTTTTHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6889999999999998886

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=80.97  E-value=0.31  Score=44.06  Aligned_cols=21  Identities=29%  Similarity=0.651  Sum_probs=18.5

Q ss_pred             EEeEeccCCCCcchhHHhhhc
Q 021210          219 RAGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~  239 (316)
                      ++++||-||||||+++..|..
T Consensus        45 n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          45 NPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CCEEEECTTSCHHHHHHHHHH
T ss_pred             CCeEECCCCCCHHHHHHHHHH
Confidence            368999999999999988874

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=80.38  E-value=0.54  Score=40.16  Aligned_cols=21  Identities=14%  Similarity=0.301  Sum_probs=19.1

Q ss_pred             EEeEeccCCCCcchhHHhhhc
Q 021210          219 RAGIVGYPNVGKSSLINRLLK  239 (316)
Q Consensus       219 ~i~ivG~pNvGKSTLiN~L~~  239 (316)
                      .+.+.|.++.|||+|+++|..
T Consensus       106 ~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         106 TIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            588999999999999999874