Citrus Sinensis ID: 021234

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-----
Protein Sequence
MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAGLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRKEAMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVKRERREAKMKNDPTEHASKKQKEESV
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHccccccccEEEEEEEcccccHHHHHHHHHHHHHccccEEEEccccccccccccccccHHHHHHHcccccEEEEccccccccccEEEEEcccccEEEEEEEEccccccccccccccccccccccccEEEEEccccccHHHHHHHHHHHHHHcccccccccccccccEEEEEEEEccccEEEEEEEEEEcccccccccEEEEEccccEEEEEEccccccHHHHHHHHHHHHHccccccccEEccccccEEEEEEccccccccccccccccccccHHHHHHccccccccccHHHHcccc
Secondary Structure Prediction (SSPRO)
ccEEEccccHHHHHHHHHccccEEEcccEEEEEEccccHHHHHHHHHHHHHHcccccEEEcccccccccccccccccHHHHHcccccEEEEEEcccccccccEEEEEEccccHHHHHHEcccccccHHHcccccccccccccccEEEEEcccccccHHHHHHHHHHHHHHccccccEEEEccccEEEEEEEcccccEEEEEEEEEEEcccccccEEEEEEcccccEEEEEEcccccHHHHHHHHHccHHHcccccccccEccccccEEEEEEccccHHHcccHHHHHHHcccHHHHHHHccccccHHHHcccccc
Coil and Loop (DISEMBL)
mlkvktpknprvkRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLkkgsairytrknenirpfesggetsleffslktdcsifiygstskkrpdnlvigrtydhHIYDLVEVgvenfkplnsfiydkklaprvgskpficfvgegfESVEELKHLKEVLVDLLRGEVIENLNLAGLDHAYVCTavssnrvfFTHCALRLKksgtivprmelvevgpcmdfvvrrhrlpnesLRKEAMKTAKDQSKKKVKNVGQdaiqgkigkiyipdqklgdmalpnkakgvkRERReakmkndptehaskkqkeesv
Flexible Loop (DISEMBL)
mlkvktpknprvkralekrapklvetgkktlilqgtktsntlndVLTELYLLkkgsairytrknenirpfesggetSLEFFSLKTDCSIFIygstskkrpdnlVIGRTYDHHIYDLVEVGVENFKPLNSFIydkklaprvGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAGLDHAYVCTAVSSNRVFFTHCALRLKksgtivprmelvevgpcmdfvvrrhrlpneslrkeamktakdqskkkvknvgqdaiqgkigkiyipdqklgdmalpnkakgvkrerreakmkndptehaskkqkeesv
Low Complexity Region (SEG)
MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAGLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRKEAMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVKRERREAKMKNDPTEHASKKQKEESV
Disordered region (IsUnstruct)
****************************KTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAGLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRH******************************IQGKIGKIYIP******************************************
Disordered Region (DISOPRED)
**********************LVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVENFKPLN*******LAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAGLDHAYVCTAVSSNRVFFTHCALRL*********MELVEVGPCMDFVVRRHRLPNESLR*********************AIQGKIGKIYIPDQKLGDM***********************************
Disordered Region (DISEMBL)
MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAGLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRK*******************DAIQGKIGKIYIPDQKLGDMALPNK******************************
Disordered Region (DISPRO)
MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAGLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRKEAMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVKR************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAGLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRKEAMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVKRERREAKMKNDPTEHASKKQKEESV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	315	2.2.26 [Sep-21-2011]
Q9LUG5	314	Ribosome production facto	yes	no	0.993	0.996	0.713	1e-128
Q9AWM9	310	Ribosome production facto	yes	no	0.958	0.974	0.681	1e-123
Q9JJ80	306	Ribosome production facto	yes	no	0.892	0.918	0.432	1e-58
Q2YDN6	306	Ribosome production facto	yes	no	0.952	0.980	0.419	3e-56
Q9H7B2	306	Ribosome production facto	yes	no	0.952	0.980	0.416	2e-55
Q9UUG1	317	Ribosome production facto	yes	no	0.898	0.892	0.393	3e-50
Q54DJ0	307	Ribosome production facto	yes	no	0.873	0.895	0.361	1e-47
P36160	344	Ribosome biogenesis prote	yes	no	0.898	0.822	0.385	8e-44
Q9VEB3	320	Ribosome production facto	yes	no	0.930	0.915	0.309	2e-43
Q9N3F0	297	Ribosome production facto	yes	no	0.853	0.905	0.340	6e-36

>sp|Q9LUG5|RPF2_ARATH Ribosome production factor 2 homolog OS=Arabidopsis thaliana GN=At3g23620 PE=2 SV=1

 Score =  459 bits (1180), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 224/314 (71%), Positives = 266/314 (84%), Gaps = 1/314 (0%)

Query: 1   MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRY 60
           M++++TPK  + KR LE RAPKLVETGKKTLIL GTKTS TL+ V+TELY LKKG AIRY
Sbjct: 1   MMEIRTPKTGKAKRVLESRAPKLVETGKKTLILHGTKTSATLSSVMTELYRLKKGGAIRY 60

Query: 61  TRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVG 120
           +R+NENIRPFESGGETSLEFFS KTDCSIF+YGS +KKRPDNLV+GR YDH +YDL+EVG
Sbjct: 61  SRRNENIRPFESGGETSLEFFSQKTDCSIFVYGSHTKKRPDNLVLGRMYDHQVYDLIEVG 120

Query: 121 VENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNL 180
           +ENFK L +F YDKK AP  G+KPFICF+GEGFE+V ELKHLKEVL DL RGEV++NLNL
Sbjct: 121 IENFKSLRAFSYDKKFAPHEGTKPFICFIGEGFENVSELKHLKEVLTDLFRGEVVDNLNL 180

Query: 181 AGLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLR 240
            GLD AYVC+A+S  +VF THCAL+LKKSG+IVPRMELVEVGP MD V+RR+RLPN+SL 
Sbjct: 181 TGLDRAYVCSAISPTKVFLTHCALKLKKSGSIVPRMELVEVGPSMDLVIRRNRLPNDSLM 240

Query: 241 KEAMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVKRERREAKMKN 300
           KEAM+T+KD+ KKK KNV QDA+ GK GKIY+PDQKL +M L +K+KG KRER++AK+K+
Sbjct: 241 KEAMRTSKDKPKKKEKNVDQDAVLGKTGKIYMPDQKLKEMKLFDKSKGSKRERKDAKLKH 300

Query: 301 DPTEHASKKQKEES 314
              E  +KK K  S
Sbjct: 301 KE-ETVAKKMKVSS 313

Arabidopsis thaliana (taxid: 3702)

>sp|Q9AWM9|RPF2_ORYSJ Ribosome production factor 2 homolog OS=Oryza sativa subsp. japonica GN=Os01g0513800 PE=2 SV=1

 Score =  441 bits (1134), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 210/308 (68%), Positives = 254/308 (82%), Gaps = 6/308 (1%)

Query: 4   VKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRK 63
           ++ P++ R KR L K APKLVETGKKTLIL GTKTS  LN VL +L+ LK+ +A++Y++K
Sbjct: 5   IRVPRSQRAKRELLKHAPKLVETGKKTLILHGTKTSAVLNSVLADLFHLKRDNAVKYSKK 64

Query: 64  NENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVEN 123
           N+NIRPFESGGETSLEFFSLKTDCS+ +YGS SKKRP+NLV+GRTYDHHIYDLVEVGVEN
Sbjct: 65  NDNIRPFESGGETSLEFFSLKTDCSLIVYGSHSKKRPNNLVLGRTYDHHIYDLVEVGVEN 124

Query: 124 FKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAGL 183
           +K + S++YDKKLAP++GSKPF  F+GE FESVEELKHLKEVL+DL +GEV+ENLNLAG+
Sbjct: 125 YKSIESYVYDKKLAPKLGSKPFFAFIGEHFESVEELKHLKEVLLDLFKGEVVENLNLAGV 184

Query: 184 DHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRKEA 243
           D  +VCTA+S   V+  HCALRLK+SGT +PR+ELVEVGP MD VVRRHR P ESL+KEA
Sbjct: 185 DRVFVCTAISPTTVYMMHCALRLKRSGTSIPRIELVEVGPSMDLVVRRHRYPVESLKKEA 244

Query: 244 MKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVKRERREAKMKNDPT 303
           MKTA     KK+KNV +D + GK+GK+YIPDQ++  M+L N  KG+KRERREAK   D  
Sbjct: 245 MKTA--DHAKKMKNVTKDPVHGKLGKVYIPDQQIAKMSLSNDVKGLKRERREAKKNKD-- 300

Query: 304 EHASKKQK 311
              SKKQK
Sbjct: 301 --HSKKQK 306

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9JJ80|RPF2_MOUSE Ribosome production factor 2 homolog OS=Mus musculus GN=Rpf2 PE=2 SV=2

 Score =  226 bits (577), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 125/289 (43%), Positives = 178/289 (61%), Gaps = 8/289 (2%)

Query: 3   KVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTR 62
           KV  PK  R KR LEKR PKL E  K  ++++G   + T+  VL ++Y LKK   + Y +
Sbjct: 6   KVLKPKTKRAKRFLEKREPKLTENIKNAMLIKGGNANATVTQVLRDMYALKKPYGVLYKK 65

Query: 63  KNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVE 122
           KN   RPFE   +TSLEFFS K+DCS+F++GS +KKRP+NLVIGR YD+H+ D++E+G+E
Sbjct: 66  KNIT-RPFED--QTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGIE 122

Query: 123 NFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAG 182
            F  L      K   P  G+KP + F G+ F+  E+ + LK +L+D  RG  + N+ LAG
Sbjct: 123 KFVSLKDIKTSK--CPE-GTKPMLIFAGDDFDVTEDFRRLKNLLIDFFRGPTVSNVRLAG 179

Query: 183 LDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRKE 242
           L++    TA++  +V+F    L LKKSG   PR+EL E+GP +D V+RR  L ++ L K 
Sbjct: 180 LEYVLHFTALNG-KVYFRSYKLLLKKSGCRTPRIELEEMGPSLDLVMRRTHLASDDLYKL 238

Query: 243 AMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVKR 291
           +MK  K    KK KN+ QD      G+I++  Q L  +    K KG+K+
Sbjct: 239 SMKVPKALKPKKRKNISQDTFGTTFGRIHMQKQDLSKLQ-TRKMKGLKK 286

Mus musculus (taxid: 10090)

>sp|Q2YDN6|RPF2_BOVIN Ribosome production factor 2 homolog OS=Bos taurus GN=RPF2 PE=2 SV=1

 Score =  219 bits (557), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 130/310 (41%), Positives = 190/310 (61%), Gaps = 10/310 (3%)

Query: 3   KVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTR 62
           +V  PK  R KR LEKR PKL E  K  ++++G   ++T+  VL ++Y LKK   I Y +
Sbjct: 6   RVVKPKTKRAKRFLEKREPKLSENIKNAMLIKGGNANSTVTQVLRDVYALKKPYGILYKK 65

Query: 63  KNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVE 122
           KN   RPFE   +TSLEFFS K+DCS+F++GS +KKRP+NLVIGR YD+H+ D++E+G+E
Sbjct: 66  KNIT-RPFED--QTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDIIELGIE 122

Query: 123 NFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAG 182
            F  L      K   P  G+KP + F G+ F+  E+ + LK +L+D  RG  + N+ LAG
Sbjct: 123 KFVSLKDIKNSK--CPE-GTKPMLIFAGDDFDVTEDYRRLKSLLIDFFRGPTVSNIRLAG 179

Query: 183 LDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRKE 242
           L++    TA++  +++F    L LKKSG   PR+EL E+GP +D V+RR  L ++ L K 
Sbjct: 180 LEYVLHFTALNG-KIYFRSYKLLLKKSGCRTPRIELEEMGPSLDLVLRRTHLASDDLYKL 238

Query: 243 AMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVKRERREAKMKNDP 302
           +MK  K    KK KN+  D      G+I++  Q L  +    K KG+K  +R A+ K + 
Sbjct: 239 SMKMPKALKPKKKKNISHDTFGTTYGRIHMQKQDLSKLQ-TRKMKGLK--KRPAERKAED 295

Query: 303 TEHASKKQKE 312
            E+ SK+ K+
Sbjct: 296 EENKSKRIKK 305

Bos taurus (taxid: 9913)

>sp|Q9H7B2|RPF2_HUMAN Ribosome production factor 2 homolog OS=Homo sapiens GN=RPF2 PE=1 SV=2

 Score =  216 bits (550), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 129/310 (41%), Positives = 188/310 (60%), Gaps = 10/310 (3%)

Query: 3   KVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTR 62
           +V  PK  R KR LEKR PKL E  K  ++++G   + T+  VL ++Y LKK   + Y +
Sbjct: 6   RVVKPKTKRAKRFLEKREPKLNENIKNAMLIKGGNANATVTKVLKDVYALKKPYGVLYKK 65

Query: 63  KNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVE 122
           KN   RPFE   +TSLEFFS K+DCS+F++GS +KKRP+NLVIGR YD+H+ D++E+G+E
Sbjct: 66  KNIT-RPFED--QTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGIE 122

Query: 123 NFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAG 182
           NF  L      K   P  G+KP + F G+ F+  E+ + LK +L+D  RG  + N+ LAG
Sbjct: 123 NFVSLKDIKNSK--CPE-GTKPMLIFAGDDFDVTEDYRRLKSLLIDFFRGPTVSNIRLAG 179

Query: 183 LDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRKE 242
           L++    TA++  +++F    L LKKSG   PR+EL E+GP +D V+RR  L ++ L K 
Sbjct: 180 LEYVLHFTALNG-KIYFRSYKLLLKKSGCRTPRIELEEMGPSLDLVLRRTHLASDDLYKL 238

Query: 243 AMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVKRERREAKMKNDP 302
           +MK  K    KK KN+  D      G+I++  Q L  +    K KG+K  +R A+   + 
Sbjct: 239 SMKMPKALKPKKKKNISHDTFGTTYGRIHMQKQDLSKLQ-TRKMKGLK--KRPAERITED 295

Query: 303 TEHASKKQKE 312
            E  SK+ K+
Sbjct: 296 HEKKSKRIKK 305

Homo sapiens (taxid: 9606)

>sp|Q9UUG1|RPF2_SCHPO Ribosome production factor 2 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC926.08c PE=1 SV=1

 Score =  199 bits (505), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 118/300 (39%), Positives = 174/300 (58%), Gaps = 17/300 (5%)

Query: 1   MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRY 60
           ML+   PKN R KRALEKR PKLVE  K  + L+G  TS    DVL +++ LKK  ++ +
Sbjct: 1   MLRQVKPKNARTKRALEKREPKLVEGAKTAIFLRGNATSQISLDVLGDIHALKKPFSVNF 60

Query: 61  TRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVG 120
            +KN NI PFE    +SLEFFS K D ++ +  + +KKRP NL   R +++ + D++E+G
Sbjct: 61  QKKN-NILPFEDA--SSLEFFSEKNDAALAVMATHNKKRPHNLTWVRFFNYRVLDMIELG 117

Query: 121 VENFKPLNSFIYDKKLAPRV-GSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLN 179
           + N+K + SF       P V G+KP I F G  F++    +H+K + +D  RGE I+ L+
Sbjct: 118 IVNYKSIQSF----SATPIVPGTKPMILFQGPVFDAHPTYRHIKSLFLDFFRGEPIQKLD 173

Query: 180 LAGLDHAYVCTAVSSNR--------VFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRR 231
            AGL +  V +A  +          V F     +L K+ T +PR+EL E+GP +DF +RR
Sbjct: 174 SAGLSYVIVVSAAEAQEDETKPLPLVHFRVYGTKLLKTKTNLPRVELEEMGPRIDFNIRR 233

Query: 232 HRLPNESLRKEAMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVKR 291
            +     + +EA+K  K Q  K  KNV  D I  K+G+I++  Q LG++    K KG+KR
Sbjct: 234 VQPAESDVLEEALKKPKTQEPKPKKNVDVDIIGNKVGRIHVDQQDLGNLQT-RKMKGLKR 292

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q54DJ0|RPF2_DICDI Ribosome production factor 2 homolog OS=Dictyostelium discoideum GN=bxdc1 PE=3 SV=1

 Score =  190 bits (483), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 102/282 (36%), Positives = 161/282 (57%), Gaps = 7/282 (2%)

Query: 1   MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRY 60
            LK +  K+   K+ L  +  K VE  K+ + ++G ++S+ +  +  +L++LKK  AI+Y
Sbjct: 9   FLKREPSKSHAAKKFLRNKEAKEVEIVKQAMFIRGQQSSDIIQKLQKDLFMLKKPEAIQY 68

Query: 61  TRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVG 120
            +KN   RP ES    S+EF   K++ S+F +GS SKKR  NL++GR +D+ ++D++E+G
Sbjct: 69  NKKNA-FRPMESA--ESIEFLGEKSNSSLFTFGSHSKKREHNLIMGRLFDNAVFDMIEMG 125

Query: 121 VENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNL 180
           + NFK +  F  D      VG+KP   F G  FE+ E +K +  + +D+ RG ++E +NL
Sbjct: 126 ISNFKSIKEFGAD---GSAVGNKPMFIFQGNEFENNETVKKVGNLFLDMFRGRLVEYINL 182

Query: 181 AGLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLR 240
            GLDH  + TAV  +++ F H       SG+ +P+++L EVGP  D  +RR +L +  L 
Sbjct: 183 VGLDHVVIMTAV-DDKILFRHYTTIFSPSGSKIPKVDLKEVGPSFDITIRRTKLASADLE 241

Query: 241 KEAMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMAL 282
           KEA K  K    K  KNV  DA+    G +Y   Q    +A 
Sbjct: 242 KEAYKVHKSVVPKAKKNVETDALGQTFGTVYKNHQDFNKIAF 283

Dictyostelium discoideum (taxid: 44689)

>sp|P36160|RPF2_YEAST Ribosome biogenesis protein RPF2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPF2 PE=1 SV=1

 Score =  177 bits (450), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 116/301 (38%), Positives = 165/301 (54%), Gaps = 18/301 (5%)

Query: 1   MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRY 60
           M++   PKN R KRAL KR  KLVE  K+ L + G   +  L+D++ +L  LKK    R+
Sbjct: 1   MIRTVKPKNARAKRALVKREAKLVENVKQALFIPGQSCNKNLHDIMVDLSALKKPDMKRF 60

Query: 61  TRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVG 120
            RKN +I PFE    + LEFFS K DCS+ +  ++SKKR +N+   RT+ + IYD++E+ 
Sbjct: 61  NRKN-DIHPFED--MSPLEFFSEKNDCSLMVLMTSSKKRKNNMTFIRTFGYKIYDMIELM 117

Query: 121 V-ENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLN 179
           V +NFK L+ F   KKL   VG KP   F G  F++    K +K + +D  RGE  +  +
Sbjct: 118 VADNFKLLSDF---KKLTFTVGLKPMFTFQGAAFDTHPVYKQIKSLFLDFFRGESTDLQD 174

Query: 180 LAGLDHAYVCTAVSSNR-------VFFTHCALRLKKS---GTIVPRMELVEVGPCMDFVV 229
           +AGL H    T     +       V F    L+  KS   G  +PR+ELVE+GP +DF +
Sbjct: 175 VAGLQHVISMTIQGDFQDGEPLPNVLFRVYKLKSYKSDQGGKRLPRIELVEIGPRLDFKI 234

Query: 230 RRHRLPNESLRKEAMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGV 289
            R   P+  +  EA K  K    K  KNV  D +  K+G+I++  Q LG +    K KG+
Sbjct: 235 GRIHTPSPDMVTEAHKKPKQLEMKTKKNVELDIMGDKLGRIHMGKQDLGKLQT-RKMKGL 293

Query: 290 K 290
           K
Sbjct: 294 K 294

Required for biogenesis of the 60S ribosomal subunit.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9VEB3|RPF2_DROME Ribosome production factor 2 homolog OS=Drosophila melanogaster GN=CG7993 PE=2 SV=3

 Score =  176 bits (446), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 97/313 (30%), Positives = 171/313 (54%), Gaps = 20/313 (6%)

Query: 1   MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRY 60
           +L+++ PK  + K+ L  R P+L+E+ +  L L G K    +   + +L  LKK      
Sbjct: 3   LLRIRKPKTRKGKKVLLAREPQLIESARTMLFLDGRKCGGNVKLCMKDLQALKKPLVKVL 62

Query: 61  TRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVG 120
            RKN+ I PF+    +SLEF ++K D ++F +GSTSKKRPDN+++GR +++ + D+ E+G
Sbjct: 63  NRKND-ITPFDD--PSSLEFLTMKNDAALFTFGSTSKKRPDNIILGRIFENEVLDMFELG 119

Query: 121 VENFKPLNSFIYDKKLAPRVGS--KPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENL 178
           ++ ++ ++ F  +K     +G+  KP + F G  +   EEL+ L+ + +D  + E ++++
Sbjct: 120 IKRYQAISEFKNEK-----IGACVKPCLVFNGPKWAQTEELRRLRNLFIDTFQREKVDSI 174

Query: 179 NLAGLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNES 238
            L G++H    T      +      + LKKSG   PR+EL E+GP  DF +RR ++ +E 
Sbjct: 175 RLQGIEHVLSFTVTDDMNILMRSYRILLKKSGQRTPRIELEEIGPSADFSIRRTKIASED 234

Query: 239 LRKEAMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVKRERREAKM 298
           L K+A K  K     K KN+  DA+    G++++  Q+ G +          + RR   +
Sbjct: 235 LYKQARKQPKQLKVGKKKNISTDALGNTKGRVHLGKQQTGSI----------QTRRVKAL 284

Query: 299 KNDPTEHASKKQK 311
           +  P E    +Q+
Sbjct: 285 RKTPEEKKENRQR 297

Drosophila melanogaster (taxid: 7227)

>sp|Q9N3F0|RPF2_CAEEL Ribosome production factor 2 homolog OS=Caenorhabditis elegans GN=Y54E10A.10 PE=3 SV=1

 Score =  151 bits (381), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 97/285 (34%), Positives = 155/285 (54%), Gaps = 16/285 (5%)

Query: 1   MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRY 60
           M++V+  K  + KR L  RA K VE  KK L  +G KT+  ++  + +L+ +KK    + 
Sbjct: 1   MVRVEKIKTKKGKRVLVNRASKTVENDKKALFCRGAKTNEIISHAMMDLFDMKKPLTTKM 60

Query: 61  TRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVG 120
            + N     FE   ET +     K D S+F+ GS SKK+P+ L  GRTYD  + D+ E+ 
Sbjct: 61  DKHNP-YHLFED--ETPIVRAGSKFDTSLFVLGSNSKKKPNCLTFGRTYDGQLLDMAELR 117

Query: 121 VENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNL 180
           + ++K  ++F   K     +GSKP +   G  FES  ++K +  ++VD  RG  ++ + L
Sbjct: 118 ITSYKSSSNFEAAKMT---LGSKPCVILEGAAFESDGDMKRIGNLMVDWFRGPKVDTVRL 174

Query: 181 AGLDHAYVCTAVSSNRVFFTHCALR-----LKKSGTIVPRMELVEVGPCMDFVVRRHRLP 235
            GL+   V TA+       T+ ALR     LKKS T  PR+EL E+GP + F V R +L 
Sbjct: 175 EGLETVIVFTALDE-----TNLALRVYRPMLKKSATATPRVELAEMGPSISFEVMRKKLA 229

Query: 236 NESLRKEAMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDM 280
           +++L K A K  K   KK+ KN+ +D    ++ ++++  Q+  D+
Sbjct: 230 DDALFKLACKKPKALMKKRRKNLSEDVFGNQLARVHVGKQRTDDI 274

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	315
225440986	315	PREDICTED: ribosome production factor 2	0.996	0.996	0.828	1e-153
224133796	314	predicted protein [Populus trichocarpa]	0.996	1.0	0.812	1e-148
255575371	315	brix domain containing protein, putative	1.0	1.0	0.825	1e-147
356548339	314	PREDICTED: ribosome production factor 2	0.996	1.0	0.764	1e-135
379067353	321	brix domain-containing protein [Nicotian	0.993	0.975	0.731	1e-133
356533497	314	PREDICTED: ribosome production factor 2	0.996	1.0	0.761	1e-133
449440199	322	PREDICTED: ribosome production factor 2	0.996	0.975	0.761	1e-132
449501062	386	PREDICTED: ribosome production factor 2	0.990	0.808	0.756	1e-131
297831116	313	brix domain-containing protein [Arabidop	0.990	0.996	0.738	1e-127
18403828	314	ribosome production factor 2-like protei	0.993	0.996	0.713	1e-127

>gi|225440986|ref|XP_002283513.1| PREDICTED: ribosome production factor 2 homolog [Vitis vinifera] gi|297740066|emb|CBI30248.3| unnamed protein product [Vitis vinifera]

 Score =  546 bits (1407), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 260/314 (82%), Positives = 290/314 (92%)

Query: 1   MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRY 60
           MLK+KTPK+ + KR +EKRAPKLVE+GKKTLILQGTKTSN LN VLTE+Y LKK SA+RY
Sbjct: 1   MLKIKTPKSGKAKREIEKRAPKLVESGKKTLILQGTKTSNVLNAVLTEIYHLKKDSAVRY 60

Query: 61  TRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVG 120
           TRKNENIRPFESGGETSLEFFSLKTDCSIF++GS SKKRPDNLVIGRTYDHHIYDLVEVG
Sbjct: 61  TRKNENIRPFESGGETSLEFFSLKTDCSIFVFGSHSKKRPDNLVIGRTYDHHIYDLVEVG 120

Query: 121 VENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNL 180
           VENFK + SF YDKKL+P+VGSKPFI F+GEGFESV+ELKHLKEVL+DLLRGEV+ENLNL
Sbjct: 121 VENFKSMESFTYDKKLSPKVGSKPFIAFIGEGFESVDELKHLKEVLLDLLRGEVVENLNL 180

Query: 181 AGLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLR 240
           AGLDHAY+CTAVSSNRVFFTHCA+RLKKSGTIVPRMELVEVGP MD VVRRHRLPN+S+R
Sbjct: 181 AGLDHAYICTAVSSNRVFFTHCAMRLKKSGTIVPRMELVEVGPSMDLVVRRHRLPNDSVR 240

Query: 241 KEAMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVKRERREAKMKN 300
           KEAMKTAK+Q KKKVKNV QD IQGK+GKIY+PDQ++G +ALP KAKG+KRERREAKMK+
Sbjct: 241 KEAMKTAKEQPKKKVKNVSQDVIQGKVGKIYVPDQQVGSVALPYKAKGLKRERREAKMKH 300

Query: 301 DPTEHASKKQKEES 314
           +  + A KKQKE S
Sbjct: 301 ETNDRAPKKQKENS 314

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133796|ref|XP_002321663.1| predicted protein [Populus trichocarpa] gi|222868659|gb|EEF05790.1| predicted protein [Populus trichocarpa]

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 255/314 (81%), Positives = 285/314 (90%)

Query: 1   MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRY 60
           MLKVKTPK  RVKR LEKR PKLVE  KKTLILQGTKTSN LN VL+E+Y LK+ +AIRY
Sbjct: 1   MLKVKTPKYGRVKRELEKREPKLVELAKKTLILQGTKTSNVLNTVLSEIYHLKRDNAIRY 60

Query: 61  TRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVG 120
           TRKN++IRPFESGGETSLEFFSLKTDCSIF+YGSTSKKRPDNLVIGRTYDHHIYDL+EVG
Sbjct: 61  TRKNDSIRPFESGGETSLEFFSLKTDCSIFVYGSTSKKRPDNLVIGRTYDHHIYDLIEVG 120

Query: 121 VENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNL 180
           VENFK ++SF YDKKLAP+ GSKPFI F GE FESV+ELKHLKEVL++LLRGEV++NLNL
Sbjct: 121 VENFKRMDSFTYDKKLAPQAGSKPFIVFSGEAFESVDELKHLKEVLLELLRGEVVDNLNL 180

Query: 181 AGLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLR 240
           AGL   YVCTA+SSNRVF THCA+RLKKSGTIVPR+ELVE+GP MDFVVRRHRLPNESLR
Sbjct: 181 AGLGRVYVCTAISSNRVFLTHCAMRLKKSGTIVPRIELVEIGPSMDFVVRRHRLPNESLR 240

Query: 241 KEAMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVKRERREAKMKN 300
           KEAMKTAKD+  KK+KNV +DA+QGK+GKIY+PDQK+G+M LPNKAKGVKRERREAK+KN
Sbjct: 241 KEAMKTAKDKLHKKIKNVSKDALQGKLGKIYVPDQKVGEMPLPNKAKGVKRERREAKVKN 300

Query: 301 DPTEHASKKQKEES 314
              E ASKKQKE+S
Sbjct: 301 SNNERASKKQKEDS 314

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575371|ref|XP_002528588.1| brix domain containing protein, putative [Ricinus communis] gi|223531984|gb|EEF33796.1| brix domain containing protein, putative [Ricinus communis]

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 260/315 (82%), Positives = 289/315 (91%)

Query: 1   MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRY 60
           MLK+K P  PR+KRALEKRAPKLVETGKKTLIL+GTKTS+ LN VLT++Y LKK SAIRY
Sbjct: 1   MLKIKAPVKPRIKRALEKRAPKLVETGKKTLILEGTKTSSVLNSVLTDIYHLKKESAIRY 60

Query: 61  TRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVG 120
           TRKN+NIRPFESGGETSLEFFS KTDCSIF+YGSTSKKRPDNLVIGRTYDHHIYDLVEVG
Sbjct: 61  TRKNDNIRPFESGGETSLEFFSEKTDCSIFVYGSTSKKRPDNLVIGRTYDHHIYDLVEVG 120

Query: 121 VENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNL 180
           +ENFK ++SF YDKK AP VGSKPFI FVGEGFESV+ELKHLKEVL+DLLRGE +ENLNL
Sbjct: 121 IENFKSMSSFKYDKKAAPHVGSKPFIAFVGEGFESVDELKHLKEVLLDLLRGEAVENLNL 180

Query: 181 AGLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLR 240
           AGLD AYVCTA SSNRVF THCA+RLKKSGT++PR+EL+EVGP MD VVRRHRLPN+SLR
Sbjct: 181 AGLDRAYVCTATSSNRVFLTHCAIRLKKSGTVIPRIELIEVGPSMDLVVRRHRLPNDSLR 240

Query: 241 KEAMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVKRERREAKMKN 300
           KEAMKTAKD+ KKK+KNV  DAIQGK+G+IYIPDQK+G+MALP+K+KGVKRERREAKMKN
Sbjct: 241 KEAMKTAKDKLKKKIKNVSADAIQGKLGRIYIPDQKIGEMALPDKSKGVKRERREAKMKN 300

Query: 301 DPTEHASKKQKEESV 315
              EHASKKQKE+S 
Sbjct: 301 GNNEHASKKQKEDST 315

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548339|ref|XP_003542560.1| PREDICTED: ribosome production factor 2 homolog [Glycine max]

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 240/314 (76%), Positives = 278/314 (88%)

Query: 1   MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRY 60
           ML++KT K  + KR LEKRAPKLVE+GKKTLIL GTKTS  LN VL ++Y LKK SA++Y
Sbjct: 1   MLEIKTAKTRKGKRELEKRAPKLVESGKKTLILHGTKTSGVLNAVLAQIYHLKKDSAVKY 60

Query: 61  TRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVG 120
           +RKNEN++PFE+GGETSLEFFSLKTDCS+F+YGS SKKRPDNLVIGRTYDHHI+DLVEVG
Sbjct: 61  SRKNENVKPFEAGGETSLEFFSLKTDCSVFVYGSHSKKRPDNLVIGRTYDHHIFDLVEVG 120

Query: 121 VENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNL 180
           VENFKP+ SF Y+KKLAP+ GSKPFI F+GEGFE+VEELKHLKEVL+DLLRGEV+ENLNL
Sbjct: 121 VENFKPMESFSYNKKLAPKEGSKPFIVFIGEGFEAVEELKHLKEVLLDLLRGEVVENLNL 180

Query: 181 AGLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLR 240
           AG+D AYVC A+S NRVFFTHCALRLKKSGT+VPRMEL EVGP MDFVVRRHR PNESLR
Sbjct: 181 AGVDRAYVCAALSPNRVFFTHCALRLKKSGTVVPRMELEEVGPSMDFVVRRHRPPNESLR 240

Query: 241 KEAMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVKRERREAKMKN 300
           KEAMKT++++ KKK KNV +D +QGKIG IYIPDQK+G+  LP KAKGVKRER+EAK KN
Sbjct: 241 KEAMKTSREKPKKKEKNVKRDELQGKIGSIYIPDQKVGETPLPYKAKGVKRERQEAKRKN 300

Query: 301 DPTEHASKKQKEES 314
           +    ASK++KE+S
Sbjct: 301 ESDGSASKRKKEDS 314

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|379067353|gb|AFC90090.1| brix domain-containing protein [Nicotiana benthamiana]

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 229/313 (73%), Positives = 272/313 (86%)

Query: 2   LKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYT 61
            K+KTP+  R++R LEKRAPKLVE+GKKTLIL GTKTS  LN+V+TE+Y LK+ ++++YT
Sbjct: 8   WKIKTPQKGRIRRELEKRAPKLVESGKKTLILHGTKTSQVLNEVMTEIYHLKRDNSVKYT 67

Query: 62  RKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGV 121
           RKN+N+RPFESGGE SLEFFSLKTDCS+F+YGS SKKRP+NLVIGRTYDHH+YDLVEVGV
Sbjct: 68  RKNDNVRPFESGGEASLEFFSLKTDCSLFVYGSHSKKRPNNLVIGRTYDHHVYDLVEVGV 127

Query: 122 ENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLA 181
           E FK + SF YDK LAP++GSKPF  F+GEGFESVEELKHLKEVL+DL  GEV+ NLNLA
Sbjct: 128 EEFKSMKSFKYDKNLAPKIGSKPFFTFIGEGFESVEELKHLKEVLLDLFHGEVVTNLNLA 187

Query: 182 GLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRK 241
           GLD  Y+CT VS  +VF THCALRLKKSGT+VPR+ELVEVGP MD VVRRHRLP++SL+K
Sbjct: 188 GLDCVYLCTVVSPKKVFLTHCALRLKKSGTVVPRIELVEVGPSMDLVVRRHRLPDDSLKK 247

Query: 242 EAMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVKRERREAKMKND 301
           EAMKT+ D++KKK KNV +DAIQGK GKIYIPDQK+G +ALP+KAKGVKRERREAK+K+ 
Sbjct: 248 EAMKTSLDKAKKKEKNVVKDAIQGKYGKIYIPDQKVGSVALPHKAKGVKRERREAKLKHV 307

Query: 302 PTEHASKKQKEES 314
             +   KKQK +S
Sbjct: 308 RDQPEEKKQKLDS 320

Source: Nicotiana benthamiana

Species: Nicotiana benthamiana

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533497|ref|XP_003535300.1| PREDICTED: ribosome production factor 2 homolog [Glycine max]

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 239/314 (76%), Positives = 277/314 (88%)

Query: 1   MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRY 60
           ML++KT K  + KR LEKRAPKLVE+GKKTLIL GTKTS  LN VL ++Y LKK  A++Y
Sbjct: 1   MLEIKTAKTRKGKRELEKRAPKLVESGKKTLILHGTKTSGVLNAVLAQIYHLKKDCAVKY 60

Query: 61  TRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVG 120
           +R+NEN++PFE+GGETSLEFFSLKTDCSIF+YGS SKKRPDNLVIGRTYDHHIYDLVEVG
Sbjct: 61  SRRNENVKPFEAGGETSLEFFSLKTDCSIFVYGSHSKKRPDNLVIGRTYDHHIYDLVEVG 120

Query: 121 VENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNL 180
           VENFKP+ SF YDKKLAP+ GSKPFI F+GEGFE+VEELKHLKEVL+DLLRGEV+ENLNL
Sbjct: 121 VENFKPMESFSYDKKLAPKEGSKPFIVFIGEGFEAVEELKHLKEVLLDLLRGEVVENLNL 180

Query: 181 AGLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLR 240
           AG+D AYVC A+S NRVFFTHCALRLKKSGT+VPRMEL EVGP MDFV+RRHR PNESLR
Sbjct: 181 AGVDRAYVCAALSPNRVFFTHCALRLKKSGTVVPRMELEEVGPSMDFVLRRHRPPNESLR 240

Query: 241 KEAMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVKRERREAKMKN 300
           KEA+KT++++ KKK KNV +D +QGKIG IYIPDQK+G+  LP KAKGVKRERRE+K KN
Sbjct: 241 KEALKTSREKPKKKEKNVKKDELQGKIGSIYIPDQKVGETPLPYKAKGVKRERRESKRKN 300

Query: 301 DPTEHASKKQKEES 314
           +    ASK++KE+S
Sbjct: 301 ESDGSASKRKKEDS 314

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440199|ref|XP_004137872.1| PREDICTED: ribosome production factor 2 homolog [Cucumis sativus]

 Score =  476 bits (1226), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 239/314 (76%), Positives = 278/314 (88%)

Query: 1   MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRY 60
           ML+++TPKN +VKR LEKRAPKLVETGKKTLIL GTKTS  LN+VLTELY LKK SA++Y
Sbjct: 1   MLQIRTPKNRKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTELYHLKKESAVKY 60

Query: 61  TRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVG 120
           +RKN+ I+PFESGG+ SLEFFSLKTDCSI +YGS SKKRP+NLVI RTY+ HIYD+VEVG
Sbjct: 61  SRKNDGIKPFESGGDASLEFFSLKTDCSIILYGSHSKKRPNNLVIARTYNQHIYDMVEVG 120

Query: 121 VENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNL 180
           +ENFK ++SF YDKKL+PRVGSKPFI F+GEGFE+VEELKHLKEVL+D  RGEV+ENLNL
Sbjct: 121 IENFKSMHSFAYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDFFRGEVVENLNL 180

Query: 181 AGLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLR 240
           +GLD  YVCTA+S N+VF THCALRLKKSG++VPRMELVEVGP MD V+RRHRLP + LR
Sbjct: 181 SGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVIRRHRLPTDGLR 240

Query: 241 KEAMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVKRERREAKMKN 300
           KEAMKTAKD++KKK KNV +D IQGKIG+IYIPDQK+GDMA+ +K+KGVKRERREAKMKN
Sbjct: 241 KEAMKTAKDKAKKKEKNVSKDIIQGKIGRIYIPDQKVGDMAIVDKSKGVKRERREAKMKN 300

Query: 301 DPTEHASKKQKEES 314
                ASKK KE+S
Sbjct: 301 RDDGPASKKPKEDS 314

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449501062|ref|XP_004161267.1| PREDICTED: ribosome production factor 2 homolog [Cucumis sativus]

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 236/312 (75%), Positives = 276/312 (88%)

Query: 1   MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRY 60
           ML+++TPKN +VKR LEKRAPKLVETGKKTLIL GTKTS  LN+VLTELY LKK SA++Y
Sbjct: 1   MLQIRTPKNRKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTELYHLKKESAVKY 60

Query: 61  TRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVG 120
           +RKN+ I+PFESGG+ SLEFFSLKTDCSI +YGS SKKRP+NLVI RTY+ HIYD+VEVG
Sbjct: 61  SRKNDGIKPFESGGDASLEFFSLKTDCSIILYGSHSKKRPNNLVIARTYNQHIYDMVEVG 120

Query: 121 VENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNL 180
           +ENFK ++SF YDKKL+PRVGSKPFI F+GEGFE+VEELKHLKEVL+D  RGEV+ENLNL
Sbjct: 121 IENFKSMHSFAYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDFFRGEVVENLNL 180

Query: 181 AGLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLR 240
           +GLD  YVCTA+S N+VF THCALRLKKSG++VPRMELVEVGP MD V+RRHRLP + LR
Sbjct: 181 SGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVIRRHRLPTDGLR 240

Query: 241 KEAMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVKRERREAKMKN 300
           KEAMKTAKD++KKK KNV +D IQGKIG+IYIPDQK+GDMA+ +K+KGVKRERREAKMKN
Sbjct: 241 KEAMKTAKDKAKKKEKNVSKDIIQGKIGRIYIPDQKVGDMAIVDKSKGVKRERREAKMKN 300

Query: 301 DPTEHASKKQKE 312
                ASK Q++
Sbjct: 301 RDDGPASKNQRK 312

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297831116|ref|XP_002883440.1| brix domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297329280|gb|EFH59699.1| brix domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 231/313 (73%), Positives = 267/313 (85%), Gaps = 1/313 (0%)

Query: 2   LKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYT 61
           ++++TPK  + KR LE RAPKLVETGKKTLIL GTKTS TL+ VL ELY LKKG AIRY+
Sbjct: 1   MEIRTPKTGKAKRVLENRAPKLVETGKKTLILHGTKTSATLSSVLMELYRLKKGGAIRYS 60

Query: 62  RKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGV 121
           R+NENIRPFESGGETSLEFFS KTDCSIF+YGS +KKRPDNLV+GR YDH +YDL+EVG+
Sbjct: 61  RRNENIRPFESGGETSLEFFSQKTDCSIFVYGSHTKKRPDNLVLGRMYDHQVYDLIEVGI 120

Query: 122 ENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLA 181
           ENFK L +F YDKK AP  GSKPFICF GEGFE+V ELKHLKEVL DL RGEV++NLNL 
Sbjct: 121 ENFKTLLAFSYDKKFAPHEGSKPFICFTGEGFENVPELKHLKEVLTDLFRGEVVDNLNLT 180

Query: 182 GLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRK 241
           GLD AYVC+A+S  +VF THCAL+LKKSG+IVPRMELVEVGP MD V+RR+RLPNESL K
Sbjct: 181 GLDRAYVCSAISPTKVFLTHCALKLKKSGSIVPRMELVEVGPSMDLVIRRNRLPNESLMK 240

Query: 242 EAMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVKRERREAKMKND 301
           EAM+T+KD+ KKKVKNV QDA+ GK GKIY+PDQKLGDM L +K+KG+KRER+EAK+K+ 
Sbjct: 241 EAMRTSKDKPKKKVKNVDQDAVLGKTGKIYMPDQKLGDMKLLDKSKGLKRERKEAKLKHK 300

Query: 302 PTEHASKKQKEES 314
             E  SKK KE S
Sbjct: 301 -EETVSKKMKESS 312

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18403828|ref|NP_566734.1| ribosome production factor 2-like protein [Arabidopsis thaliana] gi|18203245|sp|Q9LUG5.1|RPF2_ARATH RecName: Full=Ribosome production factor 2 homolog; AltName: Full=Brix domain-containing protein 1 homolog; AltName: Full=Ribosome biogenesis protein RPF2 homolog gi|9294519|dbj|BAB02781.1| unnamed protein product [Arabidopsis thaliana] gi|17979361|gb|AAL49906.1| unknown protein [Arabidopsis thaliana] gi|21689701|gb|AAM67472.1| unknown protein [Arabidopsis thaliana] gi|332643266|gb|AEE76787.1| ribosome production factor 2-like protein [Arabidopsis thaliana]

 Score =  459 bits (1180), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 224/314 (71%), Positives = 266/314 (84%), Gaps = 1/314 (0%)

Query: 1   MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRY 60
           M++++TPK  + KR LE RAPKLVETGKKTLIL GTKTS TL+ V+TELY LKKG AIRY
Sbjct: 1   MMEIRTPKTGKAKRVLESRAPKLVETGKKTLILHGTKTSATLSSVMTELYRLKKGGAIRY 60

Query: 61  TRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVG 120
           +R+NENIRPFESGGETSLEFFS KTDCSIF+YGS +KKRPDNLV+GR YDH +YDL+EVG
Sbjct: 61  SRRNENIRPFESGGETSLEFFSQKTDCSIFVYGSHTKKRPDNLVLGRMYDHQVYDLIEVG 120

Query: 121 VENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNL 180
           +ENFK L +F YDKK AP  G+KPFICF+GEGFE+V ELKHLKEVL DL RGEV++NLNL
Sbjct: 121 IENFKSLRAFSYDKKFAPHEGTKPFICFIGEGFENVSELKHLKEVLTDLFRGEVVDNLNL 180

Query: 181 AGLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLR 240
            GLD AYVC+A+S  +VF THCAL+LKKSG+IVPRMELVEVGP MD V+RR+RLPN+SL 
Sbjct: 181 TGLDRAYVCSAISPTKVFLTHCALKLKKSGSIVPRMELVEVGPSMDLVIRRNRLPNDSLM 240

Query: 241 KEAMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVKRERREAKMKN 300
           KEAM+T+KD+ KKK KNV QDA+ GK GKIY+PDQKL +M L +K+KG KRER++AK+K+
Sbjct: 241 KEAMRTSKDKPKKKEKNVDQDAVLGKTGKIYMPDQKLKEMKLFDKSKGSKRERKDAKLKH 300

Query: 301 DPTEHASKKQKEES 314
              E  +KK K  S
Sbjct: 301 KE-ETVAKKMKVSS 313

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	315
TAIR|locus:2088015	314	AT3G23620 "AT3G23620" [Arabido	0.993	0.996	0.713	5.8e-121
UNIPROTKB|F1MMB9	306	RPF2 "Ribosome production fact	0.952	0.980	0.422	4.5e-59
UNIPROTKB|Q2YDN6	306	RPF2 "Ribosome production fact	0.952	0.980	0.422	4.5e-59
MGI|MGI:1914489	306	Rpf2 "ribosome production fact	0.952	0.980	0.422	1.9e-58
UNIPROTKB|E1BZU0	306	RPF2 "Uncharacterized protein"	0.949	0.977	0.404	2.5e-58
UNIPROTKB|Q9H7B2	306	RPF2 "Ribosome production fact	0.952	0.980	0.419	4e-58
RGD|1306906	306	Rpf2 "ribosome production fact	0.904	0.931	0.433	4e-58
UNIPROTKB|E2RRK1	306	RPF2 "Uncharacterized protein"	0.952	0.980	0.412	5.9e-57
ZFIN|ZDB-GENE-040426-2501	308	rpf2 "ribosome production fact	0.933	0.954	0.395	2.9e-55
UNIPROTKB|F1RT06	263	RPF2 "Uncharacterized protein"	0.758	0.908	0.451	1.5e-51

TAIR|locus:2088015 AT3G23620 "AT3G23620" [Arabidopsis thaliana (taxid:3702)]

 Score = 1190 (424.0 bits), Expect = 5.8e-121, P = 5.8e-121
 Identities = 224/314 (71%), Positives = 266/314 (84%)

Query:     1 MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRY 60
             M++++TPK  + KR LE RAPKLVETGKKTLIL GTKTS TL+ V+TELY LKKG AIRY
Sbjct:     1 MMEIRTPKTGKAKRVLESRAPKLVETGKKTLILHGTKTSATLSSVMTELYRLKKGGAIRY 60

Query:    61 TRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVG 120
             +R+NENIRPFESGGETSLEFFS KTDCSIF+YGS +KKRPDNLV+GR YDH +YDL+EVG
Sbjct:    61 SRRNENIRPFESGGETSLEFFSQKTDCSIFVYGSHTKKRPDNLVLGRMYDHQVYDLIEVG 120

Query:   121 VENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNL 180
             +ENFK L +F YDKK AP  G+KPFICF+GEGFE+V ELKHLKEVL DL RGEV++NLNL
Sbjct:   121 IENFKSLRAFSYDKKFAPHEGTKPFICFIGEGFENVSELKHLKEVLTDLFRGEVVDNLNL 180

Query:   181 AGLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLR 240
              GLD AYVC+A+S  +VF THCAL+LKKSG+IVPRMELVEVGP MD V+RR+RLPN+SL 
Sbjct:   181 TGLDRAYVCSAISPTKVFLTHCALKLKKSGSIVPRMELVEVGPSMDLVIRRNRLPNDSLM 240

Query:   241 KEAMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVKRERREAKMKN 300
             KEAM+T+KD+ KKK KNV QDA+ GK GKIY+PDQKL +M L +K+KG KRER++AK+K+
Sbjct:   241 KEAMRTSKDKPKKKEKNVDQDAVLGKTGKIYMPDQKLKEMKLFDKSKGSKRERKDAKLKH 300

Query:   301 DPTEHASKKQKEES 314
                E  +KK K  S
Sbjct:   301 KE-ETVAKKMKVSS 313

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005730 "nucleolus" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

UNIPROTKB|F1MMB9 RPF2 "Ribosome production factor 2 homolog" [Bos taurus (taxid:9913)]

 Score = 606 (218.4 bits), Expect = 4.5e-59, P = 4.5e-59
 Identities = 131/310 (42%), Positives = 192/310 (61%)

Query:     3 KVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTR 62
             +V  PK  R KR LEKR PKL E  K  ++++G   ++T+  VL ++Y LKK   I Y +
Sbjct:     6 RVVKPKTKRAKRFLEKREPKLSENIKNAMLIKGGNANSTVTQVLRDVYALKKPYGILYKK 65

Query:    63 KNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVE 122
             KN   RPFE   +TSLEFFS K+DCS+F++GS +KKRP+NLVIGR YD+H+ D++E+G+E
Sbjct:    66 KNIT-RPFED--QTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGIE 122

Query:   123 NFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAG 182
              F  L   I + K  P  G+KP + F G+ F+  E+ + LK +L+D  RG  + N+ LAG
Sbjct:   123 KFVSLKD-IKNSK-CPE-GTKPMLIFAGDDFDVTEDYRRLKSLLIDFFRGPTVSNIRLAG 179

Query:   183 LDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRKE 242
             L++    TA++  +++F    L LKKSG   PR+EL E+GP +D V+RR  L ++ L K 
Sbjct:   180 LEYVLHFTALNG-KIYFRSYKLLLKKSGCRTPRIELEEMGPSLDLVLRRTHLASDDLYKL 238

Query:   243 AMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVKRERREAKMKNDP 302
             +MK  K    KK KN+  D      G+I++  Q L  +    K KG+K+  R A+ K + 
Sbjct:   239 SMKMPKALKPKKKKNISHDTFGTTYGRIHMQKQDLSKLQT-RKMKGLKK--RPAERKAED 295

Query:   303 TEHASKKQKE 312
              E+ SK+ K+
Sbjct:   296 EENKSKRIKK 305

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|Q2YDN6 RPF2 "Ribosome production factor 2 homolog" [Bos taurus (taxid:9913)]

 Score = 606 (218.4 bits), Expect = 4.5e-59, P = 4.5e-59
 Identities = 131/310 (42%), Positives = 192/310 (61%)

Query:     3 KVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTR 62
             +V  PK  R KR LEKR PKL E  K  ++++G   ++T+  VL ++Y LKK   I Y +
Sbjct:     6 RVVKPKTKRAKRFLEKREPKLSENIKNAMLIKGGNANSTVTQVLRDVYALKKPYGILYKK 65

Query:    63 KNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVE 122
             KN   RPFE   +TSLEFFS K+DCS+F++GS +KKRP+NLVIGR YD+H+ D++E+G+E
Sbjct:    66 KNIT-RPFED--QTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDIIELGIE 122

Query:   123 NFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAG 182
              F  L   I + K  P  G+KP + F G+ F+  E+ + LK +L+D  RG  + N+ LAG
Sbjct:   123 KFVSLKD-IKNSK-CPE-GTKPMLIFAGDDFDVTEDYRRLKSLLIDFFRGPTVSNIRLAG 179

Query:   183 LDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRKE 242
             L++    TA++  +++F    L LKKSG   PR+EL E+GP +D V+RR  L ++ L K 
Sbjct:   180 LEYVLHFTALNG-KIYFRSYKLLLKKSGCRTPRIELEEMGPSLDLVLRRTHLASDDLYKL 238

Query:   243 AMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVKRERREAKMKNDP 302
             +MK  K    KK KN+  D      G+I++  Q L  +    K KG+K+  R A+ K + 
Sbjct:   239 SMKMPKALKPKKKKNISHDTFGTTYGRIHMQKQDLSKLQT-RKMKGLKK--RPAERKAED 295

Query:   303 TEHASKKQKE 312
              E+ SK+ K+
Sbjct:   296 EENKSKRIKK 305

GO:0005730 "nucleolus" evidence=IEA

MGI|MGI:1914489 Rpf2 "ribosome production factor 2 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 131/310 (42%), Positives = 187/310 (60%)

Query:     3 KVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTR 62
             KV  PK  R KR LEKR PKL E  K  ++++G   + T+  VL ++Y LKK   + Y +
Sbjct:     6 KVLKPKTKRAKRFLEKREPKLTENIKNAMLIKGGNANATVTQVLRDMYALKKPYGVLYKK 65

Query:    63 KNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVE 122
             KN   RPFE   +TSLEFFS K+DCS+F++GS +KKRP+NLVIGR YD+H+ D++E+G+E
Sbjct:    66 KNIT-RPFED--QTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGIE 122

Query:   123 NFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAG 182
              F  L      K   P  G+KP + F G+ F+  E+ + LK +L+D  RG  + N+ LAG
Sbjct:   123 KFVSLKDIKTSK--CPE-GTKPMLIFAGDDFDVTEDFRRLKNLLIDFFRGPTVSNVRLAG 179

Query:   183 LDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRKE 242
             L++    TA++  +V+F    L LKKSG   PR+EL E+GP +D V+RR  L ++ L K 
Sbjct:   180 LEYVLHFTALNG-KVYFRSYKLLLKKSGCRTPRIELEEMGPSLDLVMRRTHLASDDLYKL 238

Query:   243 AMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVKRERREAKMKNDP 302
             +MK  K    KK KN+ QD      G+I++  Q L  +    K KG+K+  R A+   D 
Sbjct:   239 SMKVPKALKPKKRKNISQDTFGTTFGRIHMQKQDLSKLQT-RKMKGLKK--RPAENGVDD 295

Query:   303 TEHASKKQKE 312
                 SK+ K+
Sbjct:   296 QGKKSKRIKK 305

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E1BZU0 RPF2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 125/309 (40%), Positives = 189/309 (61%)

Query:     3 KVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTR 62
             +V  PK  R KR LEKR PKL E  K  ++++G   ++T+ +VL ++Y LKK  A+ Y +
Sbjct:     6 RVVKPKTKRAKRFLEKREPKLTENTKNAMLIKGGNANSTVTEVLKDIYALKKPFAVMYKK 65

Query:    63 KNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVE 122
             KN   RPFE   +TSLEFFS K+DCS+F++GS +KKRP+NL++GR +D+H+ D++E+G+E
Sbjct:    66 KNIT-RPFED--QTSLEFFSKKSDCSLFLFGSHNKKRPNNLIVGRMFDYHVLDMIELGIE 122

Query:   123 NFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAG 182
             NF  L     +K   P  G+KP + F G+ F+  EE + LK +L+D  RG  + N+ LAG
Sbjct:   123 NFVSLKDIKNNK--CPE-GTKPMLIFAGDTFDLSEEYRRLKSLLIDFFRGPTVPNIRLAG 179

Query:   183 LDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRKE 242
             L+H    TAV   +++     + LKKSG  +PR+EL ++GP +D V+RR  L ++ L K 
Sbjct:   180 LEHVLHFTAVDG-KIYMRSYKVLLKKSGCKIPRIELEDIGPSLDLVMRRTHLASDDLYKL 238

Query:   243 AMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVKRERREAKMKNDP 302
             ++K  K    KK KN+  D      G+I++  Q L  +    K KG+K+  R A+   + 
Sbjct:   239 SLKQPKALKPKKKKNISHDVFGTTYGRIHMQKQDLSKLQT-RKMKGLKK--RPAEKSAED 295

Query:   303 TEHASKKQK 311
                + KK K
Sbjct:   296 GGISPKKTK 304

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|Q9H7B2 RPF2 "Ribosome production factor 2 homolog" [Homo sapiens (taxid:9606)]

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 130/310 (41%), Positives = 190/310 (61%)

Query:     3 KVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTR 62
             +V  PK  R KR LEKR PKL E  K  ++++G   + T+  VL ++Y LKK   + Y +
Sbjct:     6 RVVKPKTKRAKRFLEKREPKLNENIKNAMLIKGGNANATVTKVLKDVYALKKPYGVLYKK 65

Query:    63 KNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVE 122
             KN   RPFE   +TSLEFFS K+DCS+F++GS +KKRP+NLVIGR YD+H+ D++E+G+E
Sbjct:    66 KNIT-RPFED--QTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGIE 122

Query:   123 NFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAG 182
             NF  L   I + K  P  G+KP + F G+ F+  E+ + LK +L+D  RG  + N+ LAG
Sbjct:   123 NFVSLKD-IKNSK-CPE-GTKPMLIFAGDDFDVTEDYRRLKSLLIDFFRGPTVSNIRLAG 179

Query:   183 LDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRKE 242
             L++    TA++  +++F    L LKKSG   PR+EL E+GP +D V+RR  L ++ L K 
Sbjct:   180 LEYVLHFTALNG-KIYFRSYKLLLKKSGCRTPRIELEEMGPSLDLVLRRTHLASDDLYKL 238

Query:   243 AMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVKRERREAKMKNDP 302
             +MK  K    KK KN+  D      G+I++  Q L  +    K KG+K+  R A+   + 
Sbjct:   239 SMKMPKALKPKKKKNISHDTFGTTYGRIHMQKQDLSKLQT-RKMKGLKK--RPAERITED 295

Query:   303 TEHASKKQKE 312
              E  SK+ K+
Sbjct:   296 HEKKSKRIKK 305

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

RGD|1306906 Rpf2 "ribosome production factor 2 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 127/293 (43%), Positives = 179/293 (61%)

Query:     3 KVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTR 62
             KV  PK  R KR LEKR PKL E  K  ++++G   + T+  VL ++Y LKK   + Y +
Sbjct:     6 KVLKPKTKRAKRFLEKREPKLSENIKNAMLIKGGNANATVTQVLRDVYALKKPYGVLYKK 65

Query:    63 KNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVE 122
             KN   RPFE   +TSLEFFS K+DCS+F++GS +KKRP+NLVIGR YD+H+ D++E+G+E
Sbjct:    66 KNIT-RPFED--QTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGIE 122

Query:   123 NFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAG 182
              F  L      K   P  G+KP + F G+ F+  E+ + LK +L+D  RG  + N+ LAG
Sbjct:   123 KFVSLKDIKTSK--CPE-GTKPMLIFAGDDFDVTEDYRRLKNLLIDFFRGPTVSNVRLAG 179

Query:   183 LDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRKE 242
             L++    TA++  +V+F    L LKKSG   PR+EL E+GP +D VVRR  L ++ L K 
Sbjct:   180 LEYVLHFTALNG-KVYFRSYKLLLKKSGCRTPRIELEEMGPSLDLVVRRTHLASDDLYKL 238

Query:   243 AMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVKRERRE 295
             +MK  K    KK KN+ QD      G+I++  Q L  +    K KG+K+   E
Sbjct:   239 SMKVPKALKPKKRKNISQDTFGTTFGRIHMQKQDLSKLQT-RKVKGLKKRPAE 290

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=IEA;ISO

UNIPROTKB|E2RRK1 RPF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
 Identities = 128/310 (41%), Positives = 189/310 (60%)

Query:     3 KVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTR 62
             +V  PK  R KR LEKR PKL E  K  ++++G   ++ +  VL ++Y LKK   + Y +
Sbjct:     6 RVVKPKTKRAKRFLEKREPKLSENIKNAMLIKGGNANSMVTQVLRDVYALKKPYGVLYKK 65

Query:    63 KNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVE 122
             KN   RPFE   +TSLEFFS K+DCS+F++GS +KKRP+NLVIGR YD+H+ D++E+G+E
Sbjct:    66 KNIT-RPFED--QTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGIE 122

Query:   123 NFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAG 182
              F  L   + + K  P  G+KP + F G+ F+  E+ + LK +L+D  RG  + N+ LAG
Sbjct:   123 KFVSLKD-VKNSK-CPE-GTKPMLIFAGDDFDVTEDYRRLKNLLIDFFRGPTVSNIRLAG 179

Query:   183 LDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRKE 242
             L++    TA++  +++F    L LKKSG   PR+EL E+G  +D V+RR RL ++ L K 
Sbjct:   180 LEYVLHFTALNG-KIYFRSYKLLLKKSGCRTPRIELEEMGLSLDLVLRRTRLASDDLYKL 238

Query:   243 AMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVKRERREAKMKNDP 302
             +MK  K    KK KNV  D      G+I++  Q L  +    K KG+K+  R A+   + 
Sbjct:   239 SMKMPKALKPKKKKNVSHDTFGTTYGRIHMQKQDLSKLQT-RKMKGLKK--RPAERITED 295

Query:   303 TEHASKKQKE 312
              E  SK+ K+
Sbjct:   296 QEKKSKRIKK 305

GO:0005730 "nucleolus" evidence=IEA

ZFIN|ZDB-GENE-040426-2501 rpf2 "ribosome production factor 2 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
 Identities = 121/306 (39%), Positives = 183/306 (59%)

Query:     8 KNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENI 67
             K  R KR LE R  KL E  K ++I++G  TS+T++  L ++Y LKK +A+ Y +KN  +
Sbjct:    11 KTRRSKRFLESRESKLKENPKNSMIIKGGNTSSTVSQALKDVYALKKPNAVLYKKKNM-V 69

Query:    68 RPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVENFKPL 127
             RPFE    T+LEFFS K+DCS+F++GS +KKRP+NL+ GR +D H+ D+ E+G+ENF+ L
Sbjct:    70 RPFEDS--TALEFFSKKSDCSLFLFGSHNKKRPNNLIFGRMFDFHVLDMFELGIENFRSL 127

Query:   128 NSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAGLDHAY 187
                  DK   P  G+KP + F G+ FE+  E + LK VL D   G  +  + LAGL+H  
Sbjct:   128 TDIKMDK--CPE-GTKPMLVFAGDLFETDREYQRLKSVLTDFFCGPRVSAVRLAGLEHVL 184

Query:   188 VCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRKEAMKTA 247
               TA+   +++     + LKKSG   PR+EL E+GP  DF +RR+   ++ L K A +  
Sbjct:   185 HFTALEG-KIYMRSYKVLLKKSGCRTPRIELEEIGPSFDFTMRRNHTASDDLYKTAHRQP 243

Query:   248 KDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVKRERREAKMKNDPTEHAS 307
             K    KK KN+  DA   ++G++++  Q L  +    K KG+++ R E    + P  HA+
Sbjct:   244 KGAKPKKKKNISHDAFGTRLGRLHMQKQDLNKLQT-RKMKGLRKRRAE----HTPDTHAA 298

Query:   308 KKQKEE 313
             K  + +
Sbjct:   299 KTPRTQ 304

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1RT06 RPF2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
 Identities = 111/246 (45%), Positives = 160/246 (65%)

Query:     3 KVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTR 62
             +V  P+  R KR LEKR PKL E  K  ++++G   ++T+  VL ++Y LKK   + Y +
Sbjct:     6 RVVKPQTKRAKRFLEKREPKLSENIKNAMLIKGGNANSTVTQVLRDVYALKKPYGVLYKK 65

Query:    63 KNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVE 122
             KN   RPFE   +TSLEFFS K+DCS+F++GS +KKRP+NLVIGR YD+H+ D++E+GVE
Sbjct:    66 KNIT-RPFED--QTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGVE 122

Query:   123 NFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAG 182
              F  L   I + K  P  G+KP + F G+ F+  E+ + LK +L+D  RG  + N+ LAG
Sbjct:   123 KFVSLKD-IKNSK-CPE-GTKPMLIFAGDDFDVTEDYRRLKSLLIDFFRGPTVPNIRLAG 179

Query:   183 LDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRKE 242
             LD+    TA++  +++F    L LKKSG   PR+EL E+GP +D V+RR  L ++ L K 
Sbjct:   180 LDYVLHFTALNG-KIYFRSYKLLLKKSGCRTPRIELEEMGPSLDLVLRRTHLASDDLYKL 238

Query:   243 AMKTAK 248
             +MK  K
Sbjct:   239 SMKMPK 244

GO:0005730 "nucleolus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2YDN6	RPF2_BOVIN	No assigned EC number	0.4193	0.9523	0.9803	yes	no
P36160	RPF2_YEAST	No assigned EC number	0.3853	0.8984	0.8226	yes	no
Q9H7B2	RPF2_HUMAN	No assigned EC number	0.4161	0.9523	0.9803	yes	no
Q9AWM9	RPF2_ORYSJ	No assigned EC number	0.6818	0.9587	0.9741	yes	no
Q9UUG1	RPF2_SCHPO	No assigned EC number	0.3933	0.8984	0.8927	yes	no
Q9VEB3	RPF2_DROME	No assigned EC number	0.3099	0.9301	0.9156	yes	no
Q54DJ0	RPF2_DICDI	No assigned EC number	0.3617	0.8730	0.8957	yes	no
Q9JJ80	RPF2_MOUSE	No assigned EC number	0.4325	0.8920	0.9183	yes	no
Q9LUG5	RPF2_ARATH	No assigned EC number	0.7133	0.9936	0.9968	yes	no
Q9N3F0	RPF2_CAEEL	No assigned EC number	0.3403	0.8539	0.9057	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00021672001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (315 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00028481001	SubName- Full=Chromosome chr7 scaffold_44, whole genome shotgun sequence; (316 aa)				•	•		•		0.915
	GSVIVG00026600001	SubName- Full=Chromosome chr12 scaffold_38, whole genome shotgun sequence; (229 aa)				•	•		•		0.896
	GSVIVG00033408001	SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (430 aa)				•	•		•		0.883
	GSVIVG00020673001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (607 aa)				•	•		•		0.881
	GSVIVG00038895001	SubName- Full=Chromosome chr8 scaffold_99, whole genome shotgun sequence; (280 aa)				•	•				0.857
	GSVIVG00027646001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (526 aa)				•	•				0.836
	GSVIVG00028006001	SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (318 aa)				•	•		•		0.825
	GSVIVG00038090001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (182 aa)				•	•				0.816
	GSVIVG00005498001	SubName- Full=Putative uncharacterized protein (Chromosome chr13 scaffold_152, whole genome sho [...] (293 aa)				•	•				0.816
	GSVIVG00037695001	SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (245 aa)				•	•		•		0.811

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	315
COG5106	316	COG5106, RPF2, Uncharacterized conserved protein [	5e-60
smart00879	180	smart00879, Brix, The Brix domain is found in a nu	5e-26
pfam04427	176	pfam04427, Brix, Brix domain	4e-24

>gnl|CDD|227437 COG5106, RPF2, Uncharacterized conserved protein [Function unknown]

 Score =  194 bits (493), Expect = 5e-60
 Identities = 111/298 (37%), Positives = 157/298 (52%), Gaps = 14/298 (4%)

Query: 1   MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRY 60
           M +   PKN RVKRAL KR PKLVE  K  +   G     TL DV+ +   LKK   I +
Sbjct: 1   MFRAVKPKNARVKRALHKREPKLVEAHKDAIFYPGMSERKTLLDVICDTEALKKPKEIGF 60

Query: 61  TRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVG 120
            RKN  I PFE    + LEFFS K D  + +  ++ KKR  NL IGR +++ + D++E+ 
Sbjct: 61  IRKN-TIHPFEDT--SPLEFFSEKNDKKLSVLFTSVKKRRHNLTIGRAFNYELIDMIELK 117

Query: 121 VENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNL 180
           +  +K ++ F   +   P +G KP + F G  F++    + +K + +D  RGE  + L+ 
Sbjct: 118 INRYKSVSDF---ECAGPELGMKPMVVFQGINFDAHPTYRRIKSLFLDFFRGESSKVLDS 174

Query: 181 AGLDHAYVCTAVSS-------NRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHR 233
           AGL      T             V F     +L K+ T +PR+EL E GP +DF + R  
Sbjct: 175 AGLSWVIARTEEGYVLDTYPLPLVVFRVYKTKLLKTKTNLPRLELEECGPRLDFEIVRSY 234

Query: 234 LPNESLRKEAMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVKR 291
             ++ L KEA+K  K Q  K  KNV +D    KIG+I+I  Q LGD+    K KG+KR
Sbjct: 235 HCSDDLYKEALKKPKTQEPKPKKNVAKDIFGDKIGRIHIDKQDLGDLQT-RKMKGLKR 291

Length = 316

>gnl|CDD|214879 smart00879, Brix, The Brix domain is found in a number of eukaryotic proteins

 Score =  101 bits (253), Expect = 5e-26
 Identities = 54/198 (27%), Positives = 75/198 (37%), Gaps = 19/198 (9%)

Query: 31  LILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLK-TDCSI 89
           LI    K S     +  +L  L   S      KN+            LEF S K     +
Sbjct: 1   LITTSRKPSKRTRQLAKDLRRLFPPSTKINRGKNK--------LNELLEFASEKGNTDLL 52

Query: 90  FIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVENFKPLNSFIYDKKLAPRVGSKPFICFV 149
            ++ S+SK RP NL I R  +    D   + V   K L  F   K      GS+P + F 
Sbjct: 53  VVFESSSKGRPLNLTIYRLPNGPTLDFKILNVSLRKELKGF---KTGNCLTGSRPLLIFN 109

Query: 150 GEGFESVEELKHLKEVLVDLLRGEVIENLNLAGLDHAYVCTAVSSNRVFFTHCALRLKKS 209
               E     K +KE+  DL  G      +L GL      +    + +FF H  ++  K 
Sbjct: 110 NFFTEL---GKLIKELFQDLFPGPPEHKKSLPGLRRVVTFSNQ-DDYIFFRHYRIKFGKK 165

Query: 210 GTIVPRMELVEVGPCMDF 227
               PR+EL E+GP    
Sbjct: 166 K---PRVELQEIGPRFTL 180

Members include SSF proteins from yeast and humans, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins. Length = 180

>gnl|CDD|218084 pfam04427, Brix, Brix domain

 Score = 96.2 bits (240), Expect = 4e-24
 Identities = 56/201 (27%), Positives = 81/201 (40%), Gaps = 25/201 (12%)

Query: 32  ILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFI 91
           I    K S  L  +  +L LL   +A +  R  + ++         LEF   K D S+ +
Sbjct: 1   ITTSRKPSKRLRQLAKDLRLLF-PNAKKLNRGKKKLK-------DLLEFAGEKGDTSLLV 52

Query: 92  YGSTSKKRPDNLVIGRTYDHHIYDLVEVGVENFKPLNSFIYDKKLAPRVGSKPFICFVGE 151
           +G   K  P NL IGR  +       E  + N K L       K     GS+P + F G 
Sbjct: 53  FGEHKK--PLNLTIGRLPNGPTL---EFRISNVKLLKDIKGKGK--GNKGSRPLLVFNGF 105

Query: 152 GFESVEELKHLKEVLVDLLRGEVIENLNLAGLDHAYVCTAVSSNRVFFTHCALRLKKSGT 211
            F     LK +KE+L DL  G  +  + L G D     +    + +FF H   + K    
Sbjct: 106 FFTR-LGLKLIKELLQDLFPGPNVHKIPLKGGDRVITFSNQ-RDTIFFRHYRYKKK---- 159

Query: 212 IVPRMELVEVGPCMDFVVRRH 232
               +EL E+GP     +RR 
Sbjct: 160 ----VELQEIGPRFTLKLRRI 176

Length = 176

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	315
KOG3031	307	consensus Protein required for biogenesis of the r	100.0
COG5106	316	RPF2 Uncharacterized conserved protein [Function u	100.0
KOG2971	299	consensus RNA-binding protein required for biogene	100.0
COG5154	283	BRX1 RNA-binding protein required for 60S ribosoma	100.0
PF04427	191	Brix: Brix domain; InterPro: IPR007109 The Brix do	100.0
smart00879	180	Brix Brix domain. The Brix domain is found in a nu	100.0
KOG2963	405	consensus RNA-binding protein required for 60S rib	99.95
KOG2781	290	consensus U3 small nucleolar ribonucleoprotein (sn	99.94
KOG2780	302	consensus Ribosome biogenesis protein RPF1, contai	99.71
PRK03972	208	ribosomal biogenesis protein; Validated	99.4
COG2136	191	IMP4 Predicted exosome subunit/U3 small nucleolar	99.23
PRK00933	165	ribosomal biogenesis protein; Validated	97.0

>KOG3031 consensus Protein required for biogenesis of the ribosomal 60S subunit [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=8.9e-95  Score=664.51  Aligned_cols=293  Identities=51%  Similarity=0.820  Sum_probs=284.9

Q ss_pred             CCCccCCCChhhHHHHHHhCCCccccCceEEEEeCCCCChhHHHHHHHHHhccccceeeeccCCCccccCCCCCCchhHh
Q 021234            1 MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEF   80 (315)
Q Consensus         1 ~~~~~k~kt~r~kr~l~~repk~~En~K~~L~l~g~~~s~~~~~llkDL~~L~kP~a~~~~Kkn~~i~pFe~~~~~~le~   80 (315)
                      |.++++||+++++|+|.+|||+++||.+.+||+.|..|++.+.++|.||++|++|.++.++|+|. ||||||.  ++|||
T Consensus         1 m~rv~k~k~~~~kr~l~kr~~klve~~k~alf~~g~~~~~tl~~vm~dl~alKKp~~i~~~rkN~-i~pFEd~--sslef   77 (307)
T KOG3031|consen    1 MNRVVKPKNARAKRALVKREPKLVENHKDALFLPGMKTNKTLLDVMKDLYALKKPLEIRYNRKNN-IHPFEDP--SSLEF   77 (307)
T ss_pred             CCceeecchhhhHHHHHhhchhhchhhhhhhccCchhhchHHHHHHHHHHHhccCceeeeccCCC-cccCCCC--chHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999996 9999997  99999


Q ss_pred             hhhcCCCCeEEEEeecCCCCCceEEEeccCCceeeeEEEEeeceeecccccCCCCCCCCCCCccEEEEeCCCCCChhhHH
Q 021234           81 FSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELK  160 (315)
Q Consensus        81 la~k~dcslf~~~s~sKKrP~~L~igR~~~g~~lDm~ef~V~n~~~m~df~~~~~~~~~~gskPlLvF~g~~F~~~~~~k  160 (315)
                      +++|+|||+|+++|||||||+||+|||+||+++||||||+|+||++++||+.+++   ..|++|||+|+|+.|++++.|+
T Consensus        78 fseK~D~slfv~gs~sKKrp~nLv~gR~fd~~vlDMiElgI~~ykslsdF~~~k~---~~gtKP~l~f~G~~f~~~~~~k  154 (307)
T KOG3031|consen   78 FSEKNDCSLFVLGSHSKKRPNNLVIGRTFDYEVLDMIELGIENYKSLSDFKAAKI---TEGTKPMLIFQGAVFDQHPEYK  154 (307)
T ss_pred             HhhhhhhhhhhhccccccCCCceEEEEecCchhhHHHHHhhhhhhhhhhhhccCC---CCCCCceEEEecchhccChHHH
Confidence            9999999999999999999999999999999999999999999999999998877   8999999999999999999999


Q ss_pred             HHHHHHHhhCCCCCCCccccCCCCEEEEEEEeCCCeEEEEEeEEEeeeCCCCCCCeeEEeeccceeEEEEEeeCCCHHHH
Q 021234          161 HLKEVLVDLLRGEVIENLNLAGLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLR  240 (315)
Q Consensus       161 ~lk~ll~d~F~~~~~~~i~l~gld~Vi~ft~~d~~~I~fR~Y~I~~kksg~~~p~veL~EiGPr~dl~~~r~~~~~~~l~  240 (315)
                      +|+|||+|||+|+.++.++|+|++|||+||+.++..|+||+|.+.+++||+.+||+||+||||++||+++|+++||+|||
T Consensus       155 rlknL~vDfFrge~vd~v~l~Gl~~v~vfta~~~~~v~~r~Y~lklkKs~~~~PRiELeE~GPsldf~irR~~~asddL~  234 (307)
T KOG3031|consen  155 RLKNLFVDFFRGEKVDKVRLAGLEYVIVFTATEETNVLFRVYRLKLKKSGTRTPRIELEEMGPSLDFEIRRTKLASDDLY  234 (307)
T ss_pred             HHHHHHHHHHcCCcccceeeccccEEEEEEeecCceeeeeeeeeeeeeccCCCCceehhhcCCceeEEEEeccCCCHHHH
Confidence            99999999999999999999999999999999988899999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhcccccccccccccCCCeeeEEeccCCCCCCCCCcccccCCccchhHhhccC
Q 021234          241 KEAMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVKRERREAKMKN  300 (315)
Q Consensus       241 k~A~k~pk~~~~kk~KNi~~d~~g~~~Grvh~~kQdl~~lqt~rk~k~lk~~~~~~~~~~  300 (315)
                      |+|||+||++++|++|||+.|.||+++|||||++||+++||| |||||||+.++++...+
T Consensus       235 k~A~k~PK~l~~K~kKNv~~D~~g~k~GriHm~kQdl~~iqt-rK~Kglk~e~~~~~~~~  293 (307)
T KOG3031|consen  235 KEALKKPKQLEKKKKKNVSKDAFGNKLGRIHMGKQDLGDIQT-RKSKGLKKERKDARLKE  293 (307)
T ss_pred             HHHhcCchhcccccccccchhhhcCcceeEecChhhhhhHHH-HHhhhhhhccccchhcc
Confidence            999999999999999999999999999999999999999999 99999998655554443

>COG5106 RPF2 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.1e-77  Score=542.05  Aligned_cols=289  Identities=39%  Similarity=0.598  Sum_probs=277.2

Q ss_pred             CCCccCCCChhhHHHHHHhCCCccccCceEEEEeCCCCChhHHHHHHHHHhccccceeeeccCCCccccCCCCCCchhHh
Q 021234            1 MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEF   80 (315)
Q Consensus         1 ~~~~~k~kt~r~kr~l~~repk~~En~K~~L~l~g~~~s~~~~~llkDL~~L~kP~a~~~~Kkn~~i~pFe~~~~~~le~   80 (315)
                      |+|.+||||+|.||||.+|||+++|+.|.+||+.|..+++.+-++|-|+.+|++|..+.+.|+|. ||||||.  ++|||
T Consensus         1 M~r~vkpkNaR~kRAl~kRepklve~~k~AiF~pg~s~~k~lldvi~d~~alkkp~~i~f~rkn~-ihpfEd~--SplEf   77 (316)
T COG5106           1 MFRAVKPKNARVKRALHKREPKLVEAHKDAIFYPGMSERKTLLDVICDTEALKKPKEIGFIRKNT-IHPFEDT--SPLEF   77 (316)
T ss_pred             CccccCCcchHHHHHHHhcCchhhhhhhheEeccCcccchhhhhhhcchhhhccchhhccccCCc-ccccccC--CHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999999997 9999998  99999


Q ss_pred             hhhcCCCCeEEEEeecCCCCCceEEEeccCCceeeeEEEEeeceeecccccCCCCCCCCCCCccEEEEeCCCCCChhhHH
Q 021234           81 FSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELK  160 (315)
Q Consensus        81 la~k~dcslf~~~s~sKKrP~~L~igR~~~g~~lDm~ef~V~n~~~m~df~~~~~~~~~~gskPlLvF~g~~F~~~~~~k  160 (315)
                      ++++|||++.+++.|+|||+|||+|||+|++.++|||||+|.+|++++||..++   +..|.+|+++|||..|+..|.|+
T Consensus        78 fseknd~~l~vl~ts~kKr~hnlt~~R~Fny~~~DMiEl~i~~yksvsdF~~~~---~~~g~Kpmv~fQg~~fd~hp~yr  154 (316)
T COG5106          78 FSEKNDKKLSVLFTSVKKRRHNLTIGRAFNYELIDMIELKINRYKSVSDFECAG---PELGMKPMVVFQGINFDAHPTYR  154 (316)
T ss_pred             HHHhhhhhhhhhhhhccccccceeEEeecchHHHHHHHHhhhhhhehhhhhccC---CccCCceEEEEeccccccchHHH
Confidence            999999999999999999999999999999999999999999999999998554   48999999999999999999999


Q ss_pred             HHHHHHHhhCCCCCCCccccCCCCEEEEEEEeCC-------CeEEEEEeEEEeeeCCCCCCCeeEEeeccceeEEEEEee
Q 021234          161 HLKEVLVDLLRGEVIENLNLAGLDHAYVCTAVSS-------NRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHR  233 (315)
Q Consensus       161 ~lk~ll~d~F~~~~~~~i~l~gld~Vi~ft~~d~-------~~I~fR~Y~I~~kksg~~~p~veL~EiGPr~dl~~~r~~  233 (315)
                      +|+|||.|||+|...+.....|+.|||+.|+...       +.+.||+|...+-++.+.+||+||+|||||+||+++|++
T Consensus       155 ~iksLflDFFrges~~~ldsagls~Vi~~t~~g~~~d~~plp~v~fRVyk~k~~kt~~~lpr~elee~GPrldf~i~R~~  234 (316)
T COG5106         155 RIKSLFLDFFRGESSKVLDSAGLSWVIARTEEGYVLDTYPLPLVVFRVYKTKLLKTKTNLPRLELEECGPRLDFEIVRSY  234 (316)
T ss_pred             HHHHHHHHHHcCCchhhhhhcceeEEEEEecchhhhccccccceeeeeeecccccccCCCCceehhhcccceeeEEEeec
Confidence            9999999999999999999999999999998632       358999999998899999999999999999999999999


Q ss_pred             CCCHHHHHHHHhhhhhcccccccccccccCCCeeeEEeccCCCCCCCCCcccccCCccchhHh
Q 021234          234 LPNESLRKEAMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVKRERREA  296 (315)
Q Consensus       234 ~~~~~l~k~A~k~pk~~~~kk~KNi~~d~~g~~~Grvh~~kQdl~~lqt~rk~k~lk~~~~~~  296 (315)
                      .+++|+|++|++.|+++++|.+||+..|.|||++|||||++|||+.||| |||||||+.-.+.
T Consensus       235 ~~s~d~~~ealkkPk~~e~KpkKNv~~di~gdkiGriHidkQDLg~lqt-rKmkGlk~gvee~  296 (316)
T COG5106         235 HCSDDLYKEALKKPKTQEPKPKKNVAKDIFGDKIGRIHIDKQDLGDLQT-RKMKGLKRGVEEW  296 (316)
T ss_pred             CCChHHHHHHhcCccccCCCcccchhhhhhhccccceeechhHhhhHHH-Hhhhccccccccc
Confidence            9999999999999999999999999999999999999999999999999 9999999765443

>KOG2971 consensus RNA-binding protein required for biogenesis of the ribosomal 60S subunit [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.3e-45  Score=332.70  Aligned_cols=206  Identities=16%  Similarity=0.249  Sum_probs=186.9

Q ss_pred             ccccCceEEEEeCCCCChhHHHHHHHHHhccccceeeecc----CCCccccCCCCCCchhHhhhhcCCCCeEEEEeecCC
Q 021234           23 LVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTR----KNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKK   98 (315)
Q Consensus        23 ~~En~K~~L~l~g~~~s~~~~~llkDL~~L~kP~a~~~~K----kn~~i~pFe~~~~~~le~la~k~dcslf~~~s~sKK   98 (315)
                      .+.|.+++|++++|++|.+.||||+||..|+ ||+...+|    ++  +        ..|+++|+.++|+.++|++++|+
T Consensus        45 ~w~NK~rvlv~ssRgis~R~RhLm~di~~Ll-ph~k~dsk~d~~k~--l--------~~lnel~elkncn~~lfFesrkr  113 (299)
T KOG2971|consen   45 KWKNKERVLVLSSRGISFRTRHLMKDISSLL-PHSKKDSKLDRKKK--L--------GVLNELAELKNCNSCLFFESRKR  113 (299)
T ss_pred             ccccceeEEEEecCCchHHHHHHHHHHHHhc-ccccccchhhhcch--H--------HHHHHHHHHhcCCeEEEEEeecc
Confidence            4668999999999999999999999999998 99987654    22  2        79999999999999999999999


Q ss_pred             CCCceEEEeccCCceeeeEEEEeeceeecccccCC-CCCCCCCCCccEEEEeCCCCCChhhHHHHHHHHHhhCCCCCCCc
Q 021234           99 RPDNLVIGRTYDHHIYDLVEVGVENFKPLNSFIYD-KKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIEN  177 (315)
Q Consensus        99 rP~~L~igR~~~g~~lDm~ef~V~n~~~m~df~~~-~~~~~~~gskPlLvF~g~~F~~~~~~k~lk~ll~d~F~~~~~~~  177 (315)
                      +..|||+++.++||+   +.|.|+|.|||+|++++ +|   +.||+|+|.|+.. ||+.|||+++|+||.++|+.|..|+
T Consensus       114 ~DlYlWm~~~p~GpS---vkFlv~n~hTM~ElkmtgN~---lkgsrplLsFd~~-Fd~~pHlkl~Kell~q~fgiP~~hr  186 (299)
T KOG2971|consen  114 KDLYLWMSNSPNGPS---VKFLVHNVHTMAELKMTGNC---LKGSRPLLSFDKA-FDELPHLKLLKELLEQIFGIPKHHR  186 (299)
T ss_pred             CceeEEEecCCCCCc---eEEehhhhhhHHHhCCcccc---ccCCcceeecccc-cccchHHHHHHHHHHHHcCCCCCCc
Confidence            999999999999999   79999999999999998 56   9999999999985 9999999999999999999999999


Q ss_pred             cccCCCCEEEEEEEeCCCeEEEEEeEEEeeeCCCCCCCeeEEeeccceeEEEEEeeC--------------CCHHHHHHH
Q 021234          178 LNLAGLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRL--------------PNESLRKEA  243 (315)
Q Consensus       178 i~l~gld~Vi~ft~~d~~~I~fR~Y~I~~kksg~~~p~veL~EiGPr~dl~~~r~~~--------------~~~~l~k~A  243 (315)
                      .|.|++|||++||+.|+. ||||+|+|...      ....|+||||||+|+++++..              .|+.+.+.+
T Consensus       187 kSkpf~Dhvf~Fsi~D~~-IWfRnyqI~~~------ed~~L~EiGPRfvl~~ikif~gsFgG~~lYenp~yvspn~~r~~  259 (299)
T KOG2971|consen  187 KSKPFVDHVFTFSILDGK-IWFRNYQISEE------EDKTLIEIGPRFVLNVIKIFEGSFGGPTLYENPKYVSPNMIRAV  259 (299)
T ss_pred             ccCCccceEEEEEEecCe-EEEEEeEeccc------cCcceeeeccHHHHhHHHHHhccCCCceeecCccccCHHHHHHH
Confidence            999999999999999986 99999999632      348999999999999999864              677788888


Q ss_pred             Hhhhhhcccc
Q 021234          244 MKTAKDQSKK  253 (315)
Q Consensus       244 ~k~pk~~~~k  253 (315)
                      .|+..+.+.+
T Consensus       260 ~k~~~a~k~~  269 (299)
T KOG2971|consen  260 IKKQAAGKYQ  269 (299)
T ss_pred             HHHHHHHHHH
Confidence            8877765543

>COG5154 BRX1 RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=5.1e-41  Score=298.81  Aligned_cols=206  Identities=17%  Similarity=0.255  Sum_probs=185.8

Q ss_pred             cCceEEEEeCCCCChhHHHHHHHHHhccccceeeec----cCCCccccCCCCCCchhHhhhhcCCCCeEEEEeecCCCCC
Q 021234           26 TGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYT----RKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPD  101 (315)
Q Consensus        26 n~K~~L~l~g~~~s~~~~~llkDL~~L~kP~a~~~~----Kkn~~i~pFe~~~~~~le~la~k~dcslf~~~s~sKKrP~  101 (315)
                      +.+++|++.+|++|.+.+|||+||..|+ ||+++..    ++|-          .+|++||+.++|+.++|+.++|....
T Consensus        29 ~kq~~lilSsRGvsyr~RHL~~Dls~l~-phskke~KlD~kk~l----------~qLnelaelynCnn~lFFesrkr~Dl   97 (283)
T COG5154          29 PKQTSLILSSRGVSYRIRHLMKDLSRLV-PHSKKEQKLDMKKNL----------GQLNELAELYNCNNMLFFESRKRSDL   97 (283)
T ss_pred             ccceEEEEecCCchHHHHHHHHHHHHhC-cccccccccchhhhH----------HHHHHHHHHhcCCceEEEeecccccc
Confidence            6789999999999999999999999997 9997655    4442          79999999999999999999999999


Q ss_pred             ceEEEeccCCceeeeEEEEeeceeecccccCC-CCCCCCCCCccEEEEeCCCCCChhhHHHHHHHHHhhCCCCCCCcccc
Q 021234          102 NLVIGRTYDHHIYDLVEVGVENFKPLNSFIYD-KKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNL  180 (315)
Q Consensus       102 ~L~igR~~~g~~lDm~ef~V~n~~~m~df~~~-~~~~~~~gskPlLvF~g~~F~~~~~~k~lk~ll~d~F~~~~~~~i~l  180 (315)
                      +||++|.+|||+   +.|.|+|.|+|+|+.++ +|   ++||+|+|.|+.+ |++.|||+.+|++|.+.|..|.....+.
T Consensus        98 yl~~ar~pnGpt---vkF~~~NlhTMdelNftgN~---lKgsrpvLsFdk~-Fe~~pHlk~~Kell~h~F~ip~~arrSk  170 (283)
T COG5154          98 YLMGARIPNGPT---VKFRMHNLHTMDELNFTGNS---LKGSRPVLSFDKE-FEDIPHLKYAKELLEHIFGIPKGARRSK  170 (283)
T ss_pred             eeeeccCCCCCe---EEEEEeccchHhhcCCcccc---ccCCcceEeeccc-cccchHHHHHHHHHHHhccCCCcccccc
Confidence            999999999999   79999999999999998 55   9999999999996 9999999999999999999999999999


Q ss_pred             CCCCEEEEEEEeCCCeEEEEEeEEEeeeCCCCCCCeeEEeeccceeEEEEEee--------------CCCHHHHHHHHhh
Q 021234          181 AGLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHR--------------LPNESLRKEAMKT  246 (315)
Q Consensus       181 ~gld~Vi~ft~~d~~~I~fR~Y~I~~kksg~~~p~veL~EiGPr~dl~~~r~~--------------~~~~~l~k~A~k~  246 (315)
                      |++|||++|++.|+. ||+|+|.|.- ....+...|.|+||||||+|+++.+-              +.|+.+.++|+++
T Consensus       171 pfiD~v~~f~i~Dgk-IWvR~YeI~r-e~ed~~~dv~L~EIGPRfVmtvi~iLEgsFgGp~iYkn~~~vs~~~vra~ir~  248 (283)
T COG5154         171 PFIDKVLCFFILDGK-IWVRCYEIGR-ENEDKSKDVKLEEIGPRFVMTVIKILEGSFGGPAIYKNETFVSSTMVRAAIRN  248 (283)
T ss_pred             cchhheEEEEEecCe-EEEEEEeecc-ccccccccceeeeeccHHHHHHHHHHHhccCCceeeecccccchHHHHHHHHH
Confidence            999999999999997 9999999952 23344456999999999999988763              4788888999998


Q ss_pred             hhhcc
Q 021234          247 AKDQS  251 (315)
Q Consensus       247 pk~~~  251 (315)
                      ..+..
T Consensus       249 qaae~  253 (283)
T COG5154         249 QAAEN  253 (283)
T ss_pred             HHHHH
Confidence            77653

>PF04427 Brix: Brix domain; InterPro: IPR007109 The Brix domain is found in a number of eukaryotic proteins including some from Saccharomyces cerevisiae and Homo sapiens, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins

Probab=100.00  E-value=5.5e-42  Score=304.30  Aligned_cols=184  Identities=33%  Similarity=0.543  Sum_probs=73.3

Q ss_pred             EEeCCCCChhHHHHHHHHHhccccceeeeccCCC-ccccCCCCCCchhHhhhhcCCCCeEEEEeecCCCCCceEEEeccC
Q 021234           32 ILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNE-NIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYD  110 (315)
Q Consensus        32 ~l~g~~~s~~~~~llkDL~~L~kP~a~~~~Kkn~-~i~pFe~~~~~~le~la~k~dcslf~~~s~sKKrP~~L~igR~~~  110 (315)
                      |++|+++|+.+++|++||+.|++|+|++++|++. .+.       ..+|+++.+++|++++|+++++ +|++|||+|+|+
T Consensus         1 i~ts~~~s~~~~~l~~DL~~l~~p~s~~~~r~~~~~l~-------~~~~~~~~~~~~~l~~~~~~~k-~p~~L~i~r~~~   72 (191)
T PF04427_consen    1 ITTSRKPSKRLRQLMKDLRSLFPPNSKKLNRKKKNSLK-------DLLEFAKQKNCTSLFVFGEHKK-NPNNLWIGRLPN   72 (191)
T ss_dssp             -EESSS--HHHHHHHHHHHTTS-TTEEE---TT---HH-------HHHHHHHHTTEEEEEEEEEETT-EEEEEEEEE-SS
T ss_pred             cCCCCCCCHHHHHHHHHHHHHcCCCeEEEeCCCCCchH-------HHHHHHHHCCCCEEEEEEEeCC-CcceEEEEecCC
Confidence            6899999999999999999998899999998875 343       4667777777778888888876 999999999999


Q ss_pred             CceeeeEEEEeeceeecccccCC-CCCCCCCCCccEEEEeCCCCCChhhHHHHHHHHHhhCCCCCCCccccCCCCEEEEE
Q 021234          111 HHIYDLVEVGVENFKPLNSFIYD-KKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAGLDHAYVC  189 (315)
Q Consensus       111 g~~lDm~ef~V~n~~~m~df~~~-~~~~~~~gskPlLvF~g~~F~~~~~~k~lk~ll~d~F~~~~~~~i~l~gld~Vi~f  189 (315)
                      ||++   +|+|.+|++++|++.. ..   ..|++|+|+|+|..|+.+++++++++||+|+|+++.++.+.+.++||||+|
T Consensus        73 gptl---~f~I~~~~~~~~~~~~~~~---~~~~~P~lif~g~~~~~~~~~~~ik~~l~~lF~~~~~~~~~~~~~~rvi~f  146 (191)
T PF04427_consen   73 GPTL---EFSIENYKLMKDIKSSSKR---PKGSRPLLIFNGFFFELDPELKLIKELLQDLFPGPNVDSIPLPGIDRVISF  146 (191)
T ss_dssp             --EE---EEEEEEEE-HHHHT----------S---EEEEE----------------------------------------
T ss_pred             CCCE---EEEEEeEEEhhHhcccccC---CCCCCeEEEEEeccccccccccccccccccccccccccccccccccccccc
Confidence            9996   9999999999999854 22   458899999999767667999999999999999999999999999999999


Q ss_pred             EEeCCCeEEEEEeEEEeeeCCCCC-----CCeeEEeeccceeEEEEEe
Q 021234          190 TAVSSNRVFFTHCALRLKKSGTIV-----PRMELVEVGPCMDFVVRRH  232 (315)
Q Consensus       190 t~~d~~~I~fR~Y~I~~kksg~~~-----p~veL~EiGPr~dl~~~r~  232 (315)
                      ++.+|..|||||| |  .+++++.     +.|+|+||||||+|+|+|+
T Consensus       147 ~~~~d~~I~fR~Y-i--~~~~~~~~~~~~~~v~L~EiGPr~~l~l~kI  191 (191)
T PF04427_consen  147 SNQRDFVIFFRHY-I--FKSGSKNPKKLLPRVELVEIGPRFTLKLRKI  191 (191)
T ss_dssp             ------------------------------------------------
T ss_pred             ccccccccccccc-c--cccccccccccccccccccccccccccccCC
Confidence            9987745999999 7  4445544     4489999999999999986

There are six (one archaean and five eukaryotic) protein families which have a similar domain architecture with a central globular Brix domain. They have an optional N- and obligatory C-terminal segments, which both have charged low-complexity regions []. Proteins from the Imp4/Brix superfamily appear to be involved in ribosomal RNA processing, which essential for the functioning of all cells. The N- and C-terminal halves of a member of the superfamily, Mil, show significant structural similarity to one another. This suggests an origin by means of an ancestral duplication. Both halves have the same fold as the anticodon-binding domain of class IIa aminoacyl-tRNA synthetases, with greater conservation seen in the N-terminal half. Structural evidence suggests that the Imp4/Brix superfamily proteins could bind single-stranded segments of RNA along a concave surface formed by the N-terminal half of their beta-sheet and a central alpha-helix [].; PDB: 2CXH_A.

>smart00879 Brix Brix domain

Probab=100.00  E-value=4.7e-36  Score=262.50  Aligned_cols=178  Identities=30%  Similarity=0.396  Sum_probs=150.2

Q ss_pred             EEEeCCCCChhHHHHHHHHHhccccceeeecc-CCCccccCCCCCCchhHhhhhc-CCCCeEEEEeecCCCCCceEEEec
Q 021234           31 LILQGTKTSNTLNDVLTELYLLKKGSAIRYTR-KNENIRPFESGGETSLEFFSLK-TDCSIFIYGSTSKKRPDNLVIGRT  108 (315)
Q Consensus        31 L~l~g~~~s~~~~~llkDL~~L~kP~a~~~~K-kn~~i~pFe~~~~~~le~la~k-~dcslf~~~s~sKKrP~~L~igR~  108 (315)
                      ||++|+++|+.++++++||+.++ |++.+.++ ++. +.       ..+|+++.+ .+|+++++.+++|++|++||++|+
T Consensus         1 lit~sr~~s~~~r~~~~dL~~~~-~~~~~~~r~~~~-~~-------~~~e~~~~~~~~~~i~v~e~~~k~~p~~L~i~~~   71 (180)
T smart00879        1 LITTSRKPSKRTRQLAKDLRRLF-PPSTKINRGKNK-LN-------ELLEFASEKGNTDLLVVFESSSKGRPLNLTIYRL   71 (180)
T ss_pred             CEEcCCCCCHHHHHHHHHHHHHC-CCcEeecccCcc-HH-------HHHHHHHHcCCccEEEEecccCCCCCceEEEEEC
Confidence            68899999999999999999998 65555554 443 42       578888887 677888888888999999999999


Q ss_pred             cCCceeeeEEEEeeceeecccccCCCCCCCCCCCccEEEEeCCCCCChhhHHHHHHHHHhhCCCCCCCccccCCCCEEEE
Q 021234          109 YDHHIYDLVEVGVENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAGLDHAYV  188 (315)
Q Consensus       109 ~~g~~lDm~ef~V~n~~~m~df~~~~~~~~~~gskPlLvF~g~~F~~~~~~k~lk~ll~d~F~~~~~~~i~l~gld~Vi~  188 (315)
                      |+||+|||.+++|..++.+..+...++   ..+++|+|+|+|..|+.   .++++++|+++|+++.++.+++++++||++
T Consensus        72 ~~gp~l~f~i~~v~~~~~~~~~~~~~~---~~~~~P~li~~~~~~~~---~~~~k~~l~~~F~~~~~~~~~~~~~~rvi~  145 (180)
T smart00879       72 PNGPTLDFKILNVSLRKELKGFKTGNC---LTGSRPLLIFNNFFTEL---GKLIKELFQDLFPGPPEHKKSLPGLRRVVT  145 (180)
T ss_pred             CCCCcEEEEEECcccHhhhhhhhcCCC---cCCCccEEEECCCCCch---HHHHHHHHHHHCCCCCccccccCCCCEEEE
Confidence            999999888887777776666543444   78899999999954443   388999999999999999999999999999


Q ss_pred             EEEeCCCeEEEEEeEEEeeeCCCCCCCeeEEeeccceeE
Q 021234          189 CTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDF  227 (315)
Q Consensus       189 ft~~d~~~I~fR~Y~I~~kksg~~~p~veL~EiGPr~dl  227 (315)
                      |++.++. ||||||.|..   +.+.++++|.||||||+|
T Consensus       146 f~~~~~~-I~~R~y~i~~---~~~~~~v~l~eiGPr~~l  180 (180)
T smart00879      146 FSNQDDY-IFFRHYRIKF---GKKKPRVELQEIGPRFTL  180 (180)
T ss_pred             EEecCCE-EEEEEEEEEc---cCCCCceEEEEecCCccC
Confidence            9999985 9999999976   556789999999999986

The Brix domain is found in a number of eukaryotic proteins including SSF proteins from yeast and humans, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins.

>KOG2963 consensus RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.95  E-value=5.8e-27  Score=221.69  Aligned_cols=167  Identities=13%  Similarity=0.189  Sum_probs=143.1

Q ss_pred             ceEEEEeCCCCChhHHHHHHHHHhccccce-ee--eccCCCccccCCCCCCchhHhhhhcCCCCeEEEEeecCCCCCceE
Q 021234           28 KKTLILQGTKTSNTLNDVLTELYLLKKGSA-IR--YTRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLV  104 (315)
Q Consensus        28 K~~L~l~g~~~s~~~~~llkDL~~L~kP~a-~~--~~Kkn~~i~pFe~~~~~~le~la~k~dcslf~~~s~sKKrP~~L~  104 (315)
                      ..+++++..-+...+++|..||+.||.||+ .+  ..|+|. |++|...        |...|+++|++++.+.. -.+|.
T Consensus        26 ph~~v~~rgla~~~~~~L~~DlR~iMeP~TA~~LkerK~N~-iKDfv~~--------~gplGVTH~l~lskt~~-nlslk   95 (405)
T KOG2963|consen   26 PHIRVGHRGLAGRSLKQLTLDLRRIMEPHTASNLKERKRNK-LKDFVVM--------SGPLGVTHLLMLSKTET-NLSLK   95 (405)
T ss_pred             ceEEEEecccccccHHHHHHHHHHhhCcchhhHHHHHhhhh-hhhHHhh--------cccccceEEEEEecccC-ceeEE
Confidence            344455544556899999999999999995 44  458897 9999984        99999999999888765 66899


Q ss_pred             EEeccCCceeeeEEEEeeceeecccccC----CCCCCCCCCCccEEEEeCCCCCCh--hhHHHHHHHHHhhCCCCCCCcc
Q 021234          105 IGRTYDHHIYDLVEVGVENFKPLNSFIY----DKKLAPRVGSKPFICFVGEGFESV--EELKHLKEVLVDLLRGEVIENL  178 (315)
Q Consensus       105 igR~~~g~~lDm~ef~V~n~~~m~df~~----~~~~~~~~gskPlLvF~g~~F~~~--~~~k~lk~ll~d~F~~~~~~~i  178 (315)
                      +.|++.||+|   .|.|..|....|+..    +.|..-.+-+.||||+||  |.++  +|++++..+|++|||..+++.+
T Consensus        96 i~R~PqGPTL---tFkV~qYsLardV~~~qkrp~~~~~~Fk~pPLlVmNg--Fg~~~~~HlkL~~t~FQNmFPsInv~tv  170 (405)
T KOG2963|consen   96 IARTPQGPTL---TFKVHQYSLARDVVSLQKRPKSPNDLFKSPPLLVLNG--FGTSGRKHLKLMTTMFQNMFPSINVATV  170 (405)
T ss_pred             EEecCCCCce---EEEeeehhhHHHHHHHHhCCCCchhhccCCCEEEEcc--CCCCcchhHHHHHHHHHHcCCCcCccee
Confidence            9999999995   999999999999864    345555788999999999  9986  8999999999999999999999


Q ss_pred             ccCCCCEEEEEEEe-CCCeEEEEEeEEEeeeC
Q 021234          179 NLAGLDHAYVCTAV-SSNRVFFTHCALRLKKS  209 (315)
Q Consensus       179 ~l~gld~Vi~ft~~-d~~~I~fR~Y~I~~kks  209 (315)
                      +|..|+||+.|+|. |+..|.||||.|...+.
T Consensus       171 nlntikRcllinyn~dt~eIdmRHysI~vvpV  202 (405)
T KOG2963|consen  171 NLNTIKRCLLINYNRDTGEIDMRHYSIRVVPV  202 (405)
T ss_pred             eccceeEEEEEecCCCCCeeeeeeeEEEEEec
Confidence            99999999999995 56679999999987653

>KOG2781 consensus U3 small nucleolar ribonucleoprotein (snoRNP) component [RNA processing and modification]

Probab=99.94  E-value=5.9e-26  Score=206.40  Aligned_cols=182  Identities=19%  Similarity=0.169  Sum_probs=164.4

Q ss_pred             ceEEEEeCCCCChhHHHHHHHHHhccccceeeeccCCCccccCCCCCCchhHhhhhcCCCCeEEEEeecCCCCCceEEEe
Q 021234           28 KKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGR  107 (315)
Q Consensus        28 K~~L~l~g~~~s~~~~~llkDL~~L~kP~a~~~~Kkn~~i~pFe~~~~~~le~la~k~dcslf~~~s~sKKrP~~L~igR  107 (315)
                      -++|+..|+..|.++.+++++|..+. |+|.++++.|. ..       ..|.+-|..+|...+++...++..|.+|++++
T Consensus        83 PKimvTTSR~PSsrL~~FaKelkLvf-PNaqr~nRG~~-~~-------~~lv~a~ra~~~Td~iivHEhRG~PdgL~vsh  153 (290)
T KOG2781|consen   83 PKIMVTTSRDPSSRLKMFAKELKLVF-PNAQRLNRGNY-VV-------GELVDAARANGVTDLIIVHEHRGIPDGLVVSH  153 (290)
T ss_pred             CcEEEEeCCCchHHHHHHHHhheEec-cChhhhcccce-eH-------HHHHHHHHHCCCceEEEEeccCCCCCceEEEe
Confidence            46899999999999999999999885 99999999996 32       78999999999999999999999999999999


Q ss_pred             ccCCceeeeEEEEeeceeecccccCCCCCCCCCCCccEEEEeCCCCCChhhHHHHHHHHHhhCCCCCCCccccCCCCEEE
Q 021234          108 TYDHHIYDLVEVGVENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAGLDHAY  187 (315)
Q Consensus       108 ~~~g~~lDm~ef~V~n~~~m~df~~~~~~~~~~gskPlLvF~g~~F~~~~~~k~lk~ll~d~F~~~~~~~i~l~gld~Vi  187 (315)
                      +|=||+   .-|.+.|+.+.+|+...+.   +...+|+|||++  |+ +...++++++|.++|++|..      .-.|||
T Consensus       154 lPfGPT---a~Fsl~nvVmRhdip~~G~---msE~~phlIfdN--f~-t~lG~Rv~~iLkhLFP~pk~------ds~Rvv  218 (290)
T KOG2781|consen  154 LPFGPT---AFFSLHNVVMRHDIPDIGT---MSEQKPHLIFDN--FT-TKLGKRVKTILKHLFPVPKD------DSKRVV  218 (290)
T ss_pred             cCCCCc---eEeeeeeeeeccccccccc---ccccCceEEecc--cc-chHHHHHHHHHHHhCCCCcC------CcccEE
Confidence            999999   6899999999999997765   788899999998  98 67899999999999998876      789999


Q ss_pred             EEEEeCCCeEEEEEeEEEeeeCCCCCCCeeEEeeccceeEEEEEeeCCCHH
Q 021234          188 VCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNES  238 (315)
Q Consensus       188 ~ft~~d~~~I~fR~Y~I~~kksg~~~p~veL~EiGPr~dl~~~r~~~~~~~  238 (315)
                      +|.+.+|- |.||||.+....  .  ..|+|.|+||||+|.+..+++++-|
T Consensus       219 tf~N~~Dy-IsFRhhvy~~~~--~--k~vel~evGPRfelklyeIrlGTlE  264 (290)
T KOG2781|consen  219 TFANRNDY-ISFRHHVYKKTD--G--KEVELTEVGPRFELKLYEIRLGTLE  264 (290)
T ss_pred             EEecCCce-EEEEEEEEecCC--C--ceEEEeeccccceeeeeeeeeccee
Confidence            99999996 999999985421  1  3599999999999999999999888

>KOG2780 consensus Ribosome biogenesis protein RPF1, contains IMP4 domain [RNA processing and modification]

Probab=99.71  E-value=2.1e-16  Score=145.88  Aligned_cols=183  Identities=15%  Similarity=0.181  Sum_probs=152.9

Q ss_pred             ceEEEEeCCCCChhHHHHHHHHHhccccceeeeccCCCccccCCCCCCchhHhhhhcCCCCeEEEEeecCCCCCceEEEe
Q 021234           28 KKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGR  107 (315)
Q Consensus        28 K~~L~l~g~~~s~~~~~llkDL~~L~kP~a~~~~Kkn~~i~pFe~~~~~~le~la~k~dcslf~~~s~sKKrP~~L~igR  107 (315)
                      -++||..+...+-....++.+|..+. ||+.-..+.|..+        .++.+.|.+.+.+.+++....++.|+.|.|+.
T Consensus        97 pKvlITt~~~~~~~t~~~~~eL~~ii-PNs~~~~R~~~~v--------k~i~~~a~~~eftdlvvV~edRkk~n~L~iih  167 (302)
T KOG2780|consen   97 PKVLITTSKNPKRTTYKFASELLDII-PNSTVKKRDNYTV--------KSIVEIAIKREFTDLVVVNEDRKKPNGLKIIH  167 (302)
T ss_pred             ccEEEEcCCCCcccHHHHHHHHHHhC-CCceEEecCCchH--------HHHHHHHHHhcCCceEEEecCcCCccceEEEe
Confidence            57889999899999999999999995 9986554556423        68888999999998888887777899999999


Q ss_pred             ccCCceeeeEEEEeeceeecccccCCCCCCCCCCCccEEEEeCCCCCChhhHHHHHHHHHhhCCCCCCCccccCCCCEEE
Q 021234          108 TYDHHIYDLVEVGVENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAGLDHAY  187 (315)
Q Consensus       108 ~~~g~~lDm~ef~V~n~~~m~df~~~~~~~~~~gskPlLvF~g~~F~~~~~~k~lk~ll~d~F~~~~~~~i~l~gld~Vi  187 (315)
                      +++||+   +-|.+.+|..-.|+..-+.   .-+..|=|++++  |. +.....+..||+.+|+.+..    . .-.+|+
T Consensus       168 lP~GPT---~~Fkls~~~~~kdi~k~g~---~t~h~PElIlNN--Ft-TrlG~~v~r~f~sLfp~~p~----f-~gRrvv  233 (302)
T KOG2780|consen  168 LPNGPT---AYFKLSNVVLTKDIKKHGR---PTSHIPELILNN--FT-TRLGMTVGRLFASLFPHDPQ----F-TGRRVV  233 (302)
T ss_pred             cCCCCc---eEEEeecccchhhhhhcCC---cccccchhhhhc--cc-chhhHHHHHHHHHhCCCCcc----c-cceeEE
Confidence            999999   6999999999999976543   456789999998  98 55677899999999987641    0 257899


Q ss_pred             EEEEeCCCeEEEEEeEEEeeeCCCCCCCeeEEeeccceeEEEEEeeCCCH
Q 021234          188 VCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNE  237 (315)
Q Consensus       188 ~ft~~d~~~I~fR~Y~I~~kksg~~~p~veL~EiGPr~dl~~~r~~~~~~  237 (315)
                      .|...-|- |+||||++..+..|   -+|-|.|+||||.|.|++.+.+.-
T Consensus       234 tFhnQrD~-IfFRhhRY~Fkee~---~kvglqElGPrfTLrL~~lq~G~f  279 (302)
T KOG2780|consen  234 TFHNQRDY-IFFRHHRYEFKEEE---IKVGLQELGPRFTLRLRRLQKGTF  279 (302)
T ss_pred             EEEecCce-EEEEEEEEeecccc---cccchhhcCCceeeeehhhhhccc
Confidence            99998885 99999999987655   357899999999999999876543

>PRK03972 ribosomal biogenesis protein; Validated

Probab=99.40  E-value=2.2e-11  Score=110.35  Aligned_cols=189  Identities=13%  Similarity=0.065  Sum_probs=145.6

Q ss_pred             EEEEeCCCCChhHHHHHHHHHhccccceeeeccCCCccccCCCCCCchhHhhhhcCCCCeEEEEeecCCCCCceEEEecc
Q 021234           30 TLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTY  109 (315)
Q Consensus        30 ~L~l~g~~~s~~~~~llkDL~~L~kP~a~~~~Kkn~~i~pFe~~~~~~le~la~k~dcslf~~~s~sKKrP~~L~igR~~  109 (315)
                      +||..|+..|++++++++||..+. |+|.+++|++..+        ..|-..|..+|.+.+++....++.|+.|++.+++
T Consensus         2 iLITTSr~PS~rtr~F~keL~~v~-Pns~~i~RGk~~l--------kel~~~A~~~g~TdLIVV~E~rg~P~~L~i~hLP   72 (208)
T PRK03972          2 MLITTSHRPTRRTRSFGHDLERVF-PNSLYLTRGKKTI--------QDLLMEAYDRGYERLLIINVWKGNPLKMTFIKVG   72 (208)
T ss_pred             EEEECCCCccHHHHHHHHHHHHhC-CCCEEEecCCccH--------HHHHHHHHHCCCCeEEEEecCCCcCCeEEEEcCC
Confidence            689999999999999999999996 9999999876534        5777788899998888888889999999999998


Q ss_pred             CCc---eeeeEEEEeeceeeccccc--CCCCCCCCCCCccEEEEeCCCCCChhhHHHHHHHHHhhCCCCCCCc--ccc--
Q 021234          110 DHH---IYDLVEVGVENFKPLNSFI--YDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIEN--LNL--  180 (315)
Q Consensus       110 ~g~---~lDm~ef~V~n~~~m~df~--~~~~~~~~~gskPlLvF~g~~F~~~~~~k~lk~ll~d~F~~~~~~~--i~l--  180 (315)
                      +||   +   .-|.+.|+++.+|+.  ..+.   .....|++|..+  |..++.+...-..+..-++.+-+..  .++  
T Consensus        73 ~gP~GPT---a~FkLsnV~l~~ei~~~~~~~---~s~~~p~iItts--~kt~~g~~~~Ak~lA~eLgi~yV~R~k~Sl~~  144 (208)
T PRK03972         73 PEDWGYL---GYLYLHGIKLQREMGFRNLRP---IREDMPLVITTA--KRVGLDHMAFAQVFAELTGGKFVPRGGKSLQD  144 (208)
T ss_pred             CCCCCce---EEEEEccEEEHHHcccCCCCC---ccccccEEEEcC--CCCCHHHHHHHHHHHHHhCCceeCcCCcCHHH
Confidence            655   7   689999999999994  3433   678899999987  8888755444445666777766654  453  


Q ss_pred             ----CCCCEEEEEEEeCCCeEEEEEeEEEeeeCCCCCCCeeEEeeccceeEEEEEeeCCCHHHHHHHHh
Q 021234          181 ----AGLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRKEAMK  245 (315)
Q Consensus       181 ----~gld~Vi~ft~~d~~~I~fR~Y~I~~kksg~~~p~veL~EiGPr~dl~~~r~~~~~~~l~k~A~k  245 (315)
                          .+.|.|+++.--.-. .-+-.|.+...+         -..+||.+-..+-+..-.-.=-||+|+-
T Consensus       145 L~~~~~~d~vLVV~~~~~~-~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (208)
T PRK03972        145 IADKYNTDVLGVIERHPRG-MAVNFYRLDVTK---------ERPVGPLIFVKIWIMEDGRRWDYKEALG  203 (208)
T ss_pred             HHhhhcCceEEEEecCCCc-eEEEEEEecccc---------ccccCCcEEEEEEEeccCcccchhhhhc
Confidence                345888888655444 667777775432         3457999998888876665556777764

>COG2136 IMP4 Predicted exosome subunit/U3 small nucleolar ribonucleoprotein (snoRNP) component, contains IMP4 domain [Translation, ribosomal structure and biogenesis / RNA processing and modification]

Probab=99.23  E-value=5.6e-10  Score=100.35  Aligned_cols=180  Identities=13%  Similarity=0.086  Sum_probs=138.1

Q ss_pred             eEEEEeCCCCChhHHHHHHHHHhccccceeeeccCCCccccCCCCCCchhHhhhhcCCCCeEEEEeecCCCCCceEEEec
Q 021234           29 KTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRT  108 (315)
Q Consensus        29 ~~L~l~g~~~s~~~~~llkDL~~L~kP~a~~~~Kkn~~i~pFe~~~~~~le~la~k~dcslf~~~s~sKKrP~~L~igR~  108 (315)
                      ++|+.+|++.|.+++++.+||.... |++...++.+..+        ..+-+-|-..+.+.+++.+..++.|..|++-..
T Consensus         3 ~~liTTSRkPS~Rtr~Fak~L~~~l-p~~~~~~rg~~~~--------~el~~~a~~~g~~~l~iv~E~rGnP~~L~f~d~   73 (191)
T COG2136           3 KMLLTTSRKPSRRTRSFAKDLSRVL-PNAYFLRRGKKSI--------IELSEEAIARGATDLLIVGERRGNPARLTFYDL   73 (191)
T ss_pred             cEEEEecCCccHHHHHHHHHHHHhC-CcceEEecCccch--------hHHHHHHHhcCCceEEEEEEecCCCcEEEEEEe
Confidence            6899999999999999999999997 9998887744323        577778999999999999999999999999999


Q ss_pred             -cCCceeeeEEEEeeceeecccccCCCCCCCCCCCccEEEEeCCCCCChhhHHHHHHHHHhh----CCCCCCCccccCCC
Q 021234          109 -YDHHIYDLVEVGVENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDL----LRGEVIENLNLAGL  183 (315)
Q Consensus       109 -~~g~~lDm~ef~V~n~~~m~df~~~~~~~~~~gskPlLvF~g~~F~~~~~~k~lk~ll~d~----F~~~~~~~i~l~gl  183 (315)
                       +.++.   +-|.+.++++..++...+.  ....+-|++++++  |.+.-.++.+.++|.++    |... .   .. ..
T Consensus        74 ~~~~~~---~~f~l~~v~l~re~~~~~~--~~~~~~~~~I~~~--~~~~~g~~~~~~~~~~~~~~~f~~~-~---~~-~~  141 (191)
T COG2136          74 EPEGLT---FSFKLSGVKLRREIPVLGP--KSRLHGPELIFNN--FTTLLGFLKVAEAFSELLLVKFVPN-P---AW-EH  141 (191)
T ss_pred             cCCCce---EEEEEecceEEEeccccCC--cccCCCCceeeec--ccccccchhhHHHHHhhcccccccC-c---cc-ce
Confidence             77776   5799999999999976532  0346679999998  98888888999999999    5422 1   11 13


Q ss_pred             CEEEEEEEeCCCeEEEEEeEEEeeeCCCCCCCeeEEeeccceeEEEEEeeCC
Q 021234          184 DHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLP  235 (315)
Q Consensus       184 d~Vi~ft~~d~~~I~fR~Y~I~~kksg~~~p~veL~EiGPr~dl~~~r~~~~  235 (315)
                      ..|+.+...++ -+.||.+.-....     ..+.+.|+||+|.+.+.|.+..
T Consensus       142 ~~v~~~~~~~~-f~~~~~~~~~~~~-----~~~~~~~vgp~~~~r~~~~~~g  187 (191)
T COG2136         142 ELVATGANKGD-FKSLRRHRRVFEE-----DGIGLEEVGPRLTLRLWRMEDG  187 (191)
T ss_pred             eeeeeccccce-EEEEEeeeeEeee-----eeeeEEEeCceeeeehhhhhhc
Confidence            33444444444 3666655544322     4688999999999999887654

>PRK00933 ribosomal biogenesis protein; Validated

Probab=97.00  E-value=0.028  Score=49.73  Aligned_cols=116  Identities=13%  Similarity=0.108  Sum_probs=77.4

Q ss_pred             EEEEeCCCCChhHHHHHHHHHhccccceeeeccCCCccccCCCCCCchhHhhhhcCCCCeEEEEeecCCCCCceEEEecc
Q 021234           30 TLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTY  109 (315)
Q Consensus        30 ~L~l~g~~~s~~~~~llkDL~~L~kP~a~~~~Kkn~~i~pFe~~~~~~le~la~k~dcslf~~~s~sKKrP~~L~igR~~  109 (315)
                      ++|.+|+++|+.++++.++|....  ++...+|+.           .+|+++++..+...+++.+..++.|+.|.+-+.-
T Consensus         1 mIITTSrkPs~~t~~fAkeLa~~l--n~~yv~Rgk-----------~Sl~eL~~~~~~~~llVV~E~kg~P~~L~iyd~~   67 (165)
T PRK00933          1 MIITTSRKPSQRTRSLVKDLARFL--NCKYVNRGK-----------MSLQELLEECEARYLLIIGEYKGNPGALKFYDVE   67 (165)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHHh--CCEEEccCC-----------ccHHHHHHHhccCcEEEEECCCCCCceEEEEECC
Confidence            368889999999999999999885  676666654           4777777655555666666678899999999988


Q ss_pred             CCceeeeEEEEeeceeecccccCCCCCCCCCCCccEEEEeCCCCCChhhHHHHHHHHHhhCCC
Q 021234          110 DHHIYDLVEVGVENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRG  172 (315)
Q Consensus       110 ~g~~lDm~ef~V~n~~~m~df~~~~~~~~~~gskPlLvF~g~~F~~~~~~k~lk~ll~d~F~~  172 (315)
                      +...+-+ -++| .+.  .+.    |.....+..|.+.=.+.      ....+.++|..+...
T Consensus        68 ~~~~~~~-~~~v-~~~--~~~----~~~~~~~~~p~~~~~~~------~~~~~~e~f~~~l~~  116 (165)
T PRK00933         68 GNKLLSY-RLSV-KLQ--REI----SGPVFKNRRPIKSAFDV------GGDELAELFDYFLFY  116 (165)
T ss_pred             CCEEEEE-EEEe-eee--ccc----CcceeecCCCcccchhh------HHHHHHHHHHHHHhh
Confidence            7877632 3343 222  122    21224666776644331      244567777776654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	315
2cxh_A	217	Probable BRIX-domain ribosomal biogenesis protein;	99.73
1w94_A	156	MIL, probable BRIX-domain ribosomal biogenesis pro	98.28

>2cxh_A Probable BRIX-domain ribosomal biogenesis protein; 18S rRNA, IMP4, U3 snoRNP, ribosomal biogenesis binding, structural genomics, NPPSFA; 1.80A {Aeropyrum pernix} SCOP: c.51.1.2

Probab=99.73  E-value=2.1e-17  Score=149.69  Aligned_cols=169  Identities=11%  Similarity=0.100  Sum_probs=132.6

Q ss_pred             cCceEEEEeCCCCChhHHHHHHHHHhccccceeeeccCCCccccCCCCCCchhHhhhhcCCCCeEEEEeecCCCCCceEE
Q 021234           26 TGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVI  105 (315)
Q Consensus        26 n~K~~L~l~g~~~s~~~~~llkDL~~L~kP~a~~~~Kkn~~i~pFe~~~~~~le~la~k~dcslf~~~s~sKKrP~~L~i  105 (315)
                      ...++||++|++.|++++++++||..+. ||+.+++|++..+        ..|.++|..++|+.++++..+++.|++|||
T Consensus        32 ~~pKvLITTSr~pS~r~r~fakeL~~~l-Pns~~i~Rgk~sL--------keL~e~a~~~~~tdlivV~e~rg~p~~L~~  102 (217)
T 2cxh_A           32 GGYRILVTTSRRPSPRIRSFVKDLSATI-PGAFRFTRGHYSM--------EELAREAIIRGADRIVVVGERRGNPGIIRV  102 (217)
T ss_dssp             -CCEEEEEESSSCCHHHHHHHHHHHTTS-TTEEECCCTTCCH--------HHHHHHHHHTTEEEEEEEEEETTEEEEEEE
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHHHHHC-CCCEEeecCCcCH--------HHHHHHHHhCCCCEEEEEEecCCCCcEEEE
Confidence            3567999999999999999999999997 9999988765434        588889999999988888888888999999


Q ss_pred             EeccCC---ceeeeEEEEeeceeecccccCCC-CCCCCCCCccEEEEeCCCCCChhhHHHHHHHHHhhCCCCCCCccccC
Q 021234          106 GRTYDH---HIYDLVEVGVENFKPLNSFIYDK-KLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLA  181 (315)
Q Consensus       106 gR~~~g---~~lDm~ef~V~n~~~m~df~~~~-~~~~~~gskPlLvF~g~~F~~~~~~k~lk~ll~d~F~~~~~~~i~l~  181 (315)
                      .++++|   |.  ++.|.|.|+++++|++..+ |   ..+++|.|+ ++  |++. ++.++++||+++|+.|..+.-+..
T Consensus       103 ~hlP~G~~~P~--Ta~F~I~nv~l~~ei~~~g~~---~~~~rP~L~-~n--F~t~-~g~~i~~~f~~lFp~P~~~~~~~~  173 (217)
T 2cxh_A          103 YAVEGPERPDN--IVSFIVKGVSLSRERRWGLPS---LRGGEVLVA-RP--LDSG-VAVEFADAFVIAFHARLKPPEAAG  173 (217)
T ss_dssp             EECCSSSCCEE--EEEEEEEEEECHHHHTCCCCC---CCSCCEEEE-EE--SSSS-THHHHHHHHHHHHCCBSSCCSSSC
T ss_pred             EECCCCCCCCc--EEEEEEeeEEehhhhccCCCc---cCCCCceEE-ee--ecCc-hHHHHHHHHHHHcCCCCCChhhhc
Confidence            999999   62  4899999999999999763 5   779999999 55  9965 789999999999998776322212


Q ss_pred             C-CCEEEEEEEeCCCeEEEEEeEEEeeeCCCCCCCeeEEeeccceeEE
Q 021234          182 G-LDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFV  228 (315)
Q Consensus       182 g-ld~Vi~ft~~d~~~I~fR~Y~I~~kksg~~~p~veL~EiGPr~dl~  228 (315)
                      | .|-+++|   +..     .|.|.+-+        ....+||.+-+.
T Consensus       174 ~~~d~~~~i---~~~-----~~~v~f~~--------~~~~~Gp~i~i~  205 (217)
T 2cxh_A          174 YVEAVIESL---DAR-----TVAVTFRY--------GGAPVGPMLRLG  205 (217)
T ss_dssp             EEEEEEEEE---ETT-----EEEEEEEC--------SSSEEEEEEEEE
T ss_pred             ccccEEEEE---cCC-----cEEEEEec--------CCCccCcEEEEc
Confidence            1 3566666   233     23444321        244679887554

>1w94_A MIL, probable BRIX-domain ribosomal biogenesis protein; archaeal IMP4-BRIX domain, IMP4 domain; 2.0A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.2

Probab=98.28  E-value=9.9e-06  Score=69.53  Aligned_cols=124  Identities=14%  Similarity=-0.008  Sum_probs=86.9

Q ss_pred             eEEEEeCCCCChhHHHHHHHHHhccccceeeeccCCCccccCCCCCCchhHhhhhcCCCCeEEEEeecCCCCCceEEEec
Q 021234           29 KTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRT  108 (315)
Q Consensus        29 ~~L~l~g~~~s~~~~~llkDL~~L~kP~a~~~~Kkn~~i~pFe~~~~~~le~la~k~dcslf~~~s~sKKrP~~L~igR~  108 (315)
                      ++||.+|+..|+.+.++.++|....  ++.+++|++.           +|.++++.....++++.++ ++.|+.|++.++
T Consensus         1 kilITTSr~Ps~~l~~fakeLa~~l--n~~~v~Rgk~-----------sl~~L~~~~~~~~iVV~e~-rg~P~~l~i~hl   66 (156)
T 1w94_A            1 HMLLTTSRKPSQRTRSFSQRLSRIM--GWRYINRGKM-----------SLRDVLIEARGPVAVVSER-HGNPARITFLDE   66 (156)
T ss_dssp             CCEEEECSSCCHHHHHHHHHHHHHH--TCEECCCTTC-----------CHHHHHHHHSSCEEEEEEE-TTEEEEEEEECT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHh--CCEEEeeCCc-----------CHHHHHHhcCCCEEEEEcC-CCCCCeEEEEeC
Confidence            4689999999999999999999885  8888888663           5666655444455555554 567999999999


Q ss_pred             cCCceeeeEEEEeeceeecccccCCCCCCCCCCCccEEEEeCCCCCChhhHHHHHHHHHhhCCCCCCCccccCCCCEEEE
Q 021234          109 YDHHIYDLVEVGVENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAGLDHAYV  188 (315)
Q Consensus       109 ~~g~~lDm~ef~V~n~~~m~df~~~~~~~~~~gskPlLvF~g~~F~~~~~~k~lk~ll~d~F~~~~~~~i~l~gld~Vi~  188 (315)
                      ++||+   +.|.+ |+...+|....++       . .+++.++    .+.+    +.|.++|.-|.+.    ..-+.|++
T Consensus        67 p~gpt---~~f~~-nv~l~~~~~~~~~-------~-~v~~~~~----~~~~----~~l~~~~~~~~~~----~~~~~~~~  122 (156)
T 1w94_A           67 RGGER---GYILF-NPSFEMKKPELAD-------K-AVRVSSC----PPGS----EGLCNLMGLEVDE----SSSRDAWS  122 (156)
T ss_dssp             TSCEE---EEEEE-EEEECSSCCCCSS-------C-CCEESCC----CTTC----HHHHHHHTCEECC----SCCTTEEE
T ss_pred             CCCCE---EEEEE-ceEEcccCcccCC-------c-eEEEecC----ChhH----HHHHHHHCCCccC----CCCceEEE
Confidence            99999   57887 8888888753221       1 1444442    4445    5666677655432    12256888


Q ss_pred             EE
Q 021234          189 CT  190 (315)
Q Consensus       189 ft  190 (315)
                      |.
T Consensus       123 i~  124 (156)
T 1w94_A          123 IR  124 (156)
T ss_dssp             EE
T ss_pred             EE
Confidence            86

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	315
d2cxha1	180	Probable ribosomal biogenesis protein {Archaeon Ae	99.71
d1w94a1	154	Probable ribosomal biogenesis protein {Methanobact	98.86

>d2cxha1 c.51.1.2 (A:13-192) Probable ribosomal biogenesis protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Brix domain
domain: Probable ribosomal biogenesis protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.71  E-value=1.7e-17  Score=144.28  Aligned_cols=167  Identities=12%  Similarity=0.069  Sum_probs=132.6

Q ss_pred             eEEEEeCCCCChhHHHHHHHHHhccccceeeeccCCCccccCCCCCCchhHhhhhcCCCCeEEEEeecCCCCCceEEEec
Q 021234           29 KTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRT  108 (315)
Q Consensus        29 ~~L~l~g~~~s~~~~~llkDL~~L~kP~a~~~~Kkn~~i~pFe~~~~~~le~la~k~dcslf~~~s~sKKrP~~L~igR~  108 (315)
                      ++||.+|++.|++++++++||..++ |||.+++|++..+        ..|..+|..++|+.+++++.+++.| +++++++
T Consensus         3 kvLITTSr~ps~~~r~f~kdL~~v~-Pns~~~~R~k~~l--------k~i~~~a~~~~~t~liiv~e~~~~p-~l~i~~l   72 (180)
T d2cxha1           3 RILVTTSRRPSPRIRSFVKDLSATI-PGAFRFTRGHYSM--------EELAREAIIRGADRIVVVGERRGNP-GIIRVYA   72 (180)
T ss_dssp             EEEEEESSSCCHHHHHHHHHHHTTS-TTEEECCCTTCCH--------HHHHHHHHHTTEEEEEEEEEETTEE-EEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhC-CCCEEeecCCCcH--------HHHHHHHHHCCCCeEEEEEccCCCC-cEEEEEC
Confidence            6899999999999999999999997 9999887655435        5788899999999888888889989 6999999


Q ss_pred             cCCce--eeeEEEEeeceeecccccCC-CCCCCCCCCccEEEEeCCCCCChhhHHHHHHHHHhhCCCCCCCccccCCCCE
Q 021234          109 YDHHI--YDLVEVGVENFKPLNSFIYD-KKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAGLDH  185 (315)
Q Consensus       109 ~~g~~--lDm~ef~V~n~~~m~df~~~-~~~~~~~gskPlLvF~g~~F~~~~~~k~lk~ll~d~F~~~~~~~i~l~gld~  185 (315)
                      ++||+  ...+.|.|.|+++.+|.+.. .+.+......|.++|++  |. +....++-.+|...|+.|..      .-.+
T Consensus        73 P~GP~~~~~t~~F~l~nv~l~~e~~~~~~~~~~~t~~~p~lilnn--f~-t~Lg~~~~~~f~~lf~~p~~------~~~~  143 (180)
T d2cxha1          73 VEGPERPDNIVSFIVKGVSLSRERRWGLPSLRGGEVLVARPLDSG--VA-VEFADAFVIAFHARLKPPEA------AGYV  143 (180)
T ss_dssp             CCSSSCCEEEEEEEEEEEECHHHHTCCCCCCCSCCEEEEEESSSS--TH-HHHHHHHHHHHCCBSSCCSS------SCEE
T ss_pred             CCCCCCccceEEEEEEEEEEehhhccccCCCCCCccccchhHhcc--cc-hHHHHHHHHHHHhhCCCchh------cCcE
Confidence            99992  11157999999999998753 22223455789999998  86 56667888899999976544      2467


Q ss_pred             EEEEEEeCCCeEEEEEeEEEeeeCCCCCCCeeEEeeccceeE
Q 021234          186 AYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDF  227 (315)
Q Consensus       186 Vi~ft~~d~~~I~fR~Y~I~~kksg~~~p~veL~EiGPr~dl  227 (315)
                      |++|...+|. |++|+|.-.            -.++||++-+
T Consensus       144 vvt~~n~~d~-if~~~~~~~------------~~~~GP~~rl  172 (180)
T d2cxha1         144 EAVIESLDAR-TVAVTFRYG------------GAPVGPMLRL  172 (180)
T ss_dssp             EEEEEEEETT-EEEEEEECS------------SSEEEEEEEE
T ss_pred             EEEEEecCCe-EEEEEEecC------------CCCCCCEEEe
Confidence            8899998887 999988742            2367998654

>d1w94a1 c.51.1.2 (A:1-154) Probable ribosomal biogenesis protein {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Brix domain
domain: Probable ribosomal biogenesis protein
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.86  E-value=8.8e-10  Score=92.63  Aligned_cols=134  Identities=14%  Similarity=-0.001  Sum_probs=99.7

Q ss_pred             EEEEeCCCCChhHHHHHHHHHhccccceeeeccCCCccccCCCCCCchhHhhhhcCCCCeEEEEeecCCCCCceEEEecc
Q 021234           30 TLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTY  109 (315)
Q Consensus        30 ~L~l~g~~~s~~~~~llkDL~~L~kP~a~~~~Kkn~~i~pFe~~~~~~le~la~k~dcslf~~~s~sKKrP~~L~igR~~  109 (315)
                      +||..|+..|++++++++||..+. |++ +++|+..           .+.++++.. .+.+++....++.|+.|++ ..+
T Consensus         1 vLITTSr~PS~rtr~F~keL~~i~-P~~-~~~Rgk~-----------~lkelv~~~-~tdlivv~E~rg~P~~l~i-h~p   65 (154)
T d1w94a1           1 MLLTTSRKPSQRTRSFSQRLSRIM-GWR-YINRGKM-----------SLRDVLIEA-RGPVAVVSERHGNPARITF-LDE   65 (154)
T ss_dssp             CEEEECSSCCHHHHHHHHHHHHHH-TCE-ECCCTTC-----------CHHHHHHHH-SSCEEEEEEETTEEEEEEE-ECT
T ss_pred             CEEECCCCccHHHHHHHHHHHHhC-CCe-EEEcCCC-----------cHHHHHHhC-CCcEEEEECCCCCCceEEE-EeC
Confidence            589999999999999999999996 976 6777653           344444332 3445555555778999999 999


Q ss_pred             CCceeeeEEEEeeceeecccccCCCCCCCCCCCccEEEEeCCCCCChhhHHHHHHHHHhhCCCCCCCccccCCCCEEEEE
Q 021234          110 DHHIYDLVEVGVENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAGLDHAYVC  189 (315)
Q Consensus       110 ~g~~lDm~ef~V~n~~~m~df~~~~~~~~~~gskPlLvF~g~~F~~~~~~k~lk~ll~d~F~~~~~~~i~l~gld~Vi~f  189 (315)
                      +||+   .-|.+.+++..+|             +|-+++++  |.+. ....+-++|..+|+.+..    -.+-+.||+|
T Consensus        66 ~gpt---~~f~l~~v~l~~e-------------~p~li~~~--f~t~-lg~~v~~~L~~lf~~~~~----~~~~~~~itf  122 (154)
T d1w94a1          66 RGGE---RGYILFNPSFEMK-------------KPELADKA--VRVS-SCPPGSEGLCNLMGLEVD----ESSSRDAWSI  122 (154)
T ss_dssp             TSCE---EEEEEEEEEECSS-------------CCCCSSCC--CEES-CCCTTCHHHHHHHTCEEC----CSCCTTEEEE
T ss_pred             CCCc---EEEEEeeEEcccc-------------CCcCcccc--cccc-cchhHHHHHHHHcCCChh----hcceeeEEEE
Confidence            9998   4788888876544             56677776  7743 344566899999987643    2234559999


Q ss_pred             EEeCCCeEEEEEe
Q 021234          190 TAVSSNRVFFTHC  202 (315)
Q Consensus       190 t~~d~~~I~fR~Y  202 (315)
                      ...++- |++++|
T Consensus       123 ~n~~d~-i~~~~~  134 (154)
T d1w94a1         123 RTDEEY-AWVMEL  134 (154)
T ss_dssp             ECCSSS-SEEEEE
T ss_pred             ecCCCE-EEEEEE
Confidence            999987 999999