Citrus Sinensis ID: 021242
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 315 | 2.2.26 [Sep-21-2011] | |||||||
| O22193 | 826 | U-box domain-containing p | no | no | 0.863 | 0.329 | 0.354 | 6e-29 | |
| Q5XEZ8 | 707 | U-box domain-containing p | no | no | 0.866 | 0.386 | 0.336 | 1e-25 | |
| Q8GUG9 | 612 | U-box domain-containing p | no | no | 0.869 | 0.447 | 0.315 | 3e-24 | |
| Q8VZ40 | 632 | U-box domain-containing p | no | no | 0.876 | 0.436 | 0.326 | 4e-21 | |
| Q0IMG9 | 694 | E3 ubiquitin-protein liga | no | no | 0.876 | 0.397 | 0.333 | 7e-21 | |
| A2ZLU6 | 694 | Protein spotted leaf 11 O | N/A | no | 0.876 | 0.397 | 0.333 | 7e-21 | |
| Q9ZV31 | 654 | U-box domain-containing p | no | no | 0.857 | 0.412 | 0.296 | 1e-20 | |
| Q6EUK7 | 728 | U-box domain-containing p | no | no | 0.850 | 0.368 | 0.330 | 1e-20 | |
| Q9C9A6 | 628 | U-box domain-containing p | no | no | 0.869 | 0.436 | 0.307 | 2e-20 | |
| Q9C7R6 | 729 | U-box domain-containing p | no | no | 0.895 | 0.386 | 0.309 | 8e-20 |
| >sp|O22193|PUB4_ARATH U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 128 bits (321), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 102/288 (35%), Positives = 163/288 (56%), Gaps = 16/288 (5%)
Query: 8 VRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQEN 67
V+ LV +L S S T+ +A AELRLL+KH+ + R +I +G+I L E+LYS+ A QEN
Sbjct: 543 VKKLVEELKSSSLDTQRQATAELRLLAKHNMDNRIVIGNSGAIVLLVELLYSTDSATQEN 602
Query: 68 AAATLLNLSITSRD-SLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYR 126
A LLNLSI + ++ G ++ + HVL + SS A ++SAATL SL V++ +
Sbjct: 603 AVTALLNLSINDNNKKAIADAGAIEPLIHVLEN----GSSEAKENSAATLFSLSVIEENK 658
Query: 127 PIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLV 186
IG + I L++++ N R KDA ALF ++++ N+ ++ G V+ L L+
Sbjct: 659 IKIG-QSGAIGPLVDLLG--NGTPRGKKDAATALFNLSIHQENKAMIVQSGAVRYLIDLM 715
Query: 187 VNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSAL 246
AG+V+ A AV+A +A E + + GI +LV++++LG+ G KENA +AL
Sbjct: 716 --DPAAGMVDKAVAVLANLATIPEGRNAIGQEGGIPLLVEVVELGSARG---KENAAAAL 770
Query: 247 LNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKIL 294
L L G ++E A+ + ++Q+G+ + + KA ALL
Sbjct: 771 LQLSTNSGRFCNMVLQEGAVP---PLVALSQSGTPRAREKAQALLSYF 815
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: - |
| >sp|Q5XEZ8|PUB2_ARATH U-box domain-containing protein 2 OS=Arabidopsis thaliana GN=PUB2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 97/288 (33%), Positives = 156/288 (54%), Gaps = 15/288 (5%)
Query: 8 VRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQEN 67
V+ L+ L S S T+ EA A +R+L+++ + R +I+ +IP L +LYS+ Q +
Sbjct: 423 VKKLIDDLKSSSLDTQREATARIRILARNSTDNRIVIARCEAIPSLVSLLYSTDERIQAD 482
Query: 68 AAATLLNLSITSRD-SLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYR 126
A LLNLSI + SL++ G + + HVL+ T A +SAATL SL V++ Y+
Sbjct: 483 AVTCLLNLSINDNNKSLIAESGAIVPLIHVLK---TGYLEEAKANSAATLFSLSVIEEYK 539
Query: 127 PIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLV 186
IG + I L++++ + + L KDA ALF ++++ N+ +VI G V+ L L+
Sbjct: 540 TEIG-EAGAIEPLVDLLGSGS--LSGKKDAATALFNLSIHHENKTKVIEAGAVRYLVELM 596
Query: 187 VNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSAL 246
G+VE A V+A +A E + GI VLV++++LG+ G KENA +AL
Sbjct: 597 --DPAFGMVEKAVVVLANLATVREGKIAIGEEGGIPVLVEVVELGSARG---KENATAAL 651
Query: 247 LNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKIL 294
L L + ++E V + + ++G+A+GK KA LLK
Sbjct: 652 LQLCTHSPKFCNNVIRE---GVIPPLVALTKSGTARGKEKAQNLLKYF 696
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q8GUG9|PUB11_ARATH U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 112 bits (280), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 91/288 (31%), Positives = 157/288 (54%), Gaps = 14/288 (4%)
Query: 8 VRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQEN 67
+R+LV +L S S + R A++E+R LSK + R +I+EAG+IP L +L S A QEN
Sbjct: 333 IRALVQRLSSRSTEDRRNAVSEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVATQEN 392
Query: 68 AAATLLNLSITSRD-SLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYR 126
A +LNLSI + L+ G + +I VLR + A +++AATL SL + D +
Sbjct: 393 AITCVLNLSIYENNKELIMFAGAVTSIVQVLRAGTME----ARENAAATLFSLSLADENK 448
Query: 127 PIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLV 186
IIG I +L+++++ N R KDA ALF + +Y N+ + + G V L ++
Sbjct: 449 IIIGGS-GAIPALVDLLE--NGTPRGKKDAATALFNLCIYHGNKGRAVRAGIVTALVKML 505
Query: 187 VNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSAL 246
+ R +V++A +++ +A +++ K + L+ +L R +ENA + L
Sbjct: 506 SDSTRHRMVDEALTILSVLANNQDAKSAIVKANTLPALIGILQTDQ---TRNRENAAAIL 562
Query: 247 LNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKIL 294
L+L E+ + + V + D+++NG+ +GK KA++LL++L
Sbjct: 563 LSLCKRDTEKLI-TIGRLGAVVP--LMDLSKNGTERGKRKAISLLELL 607
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q8VZ40|PUB14_ARATH U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 97/297 (32%), Positives = 161/297 (54%), Gaps = 21/297 (7%)
Query: 2 EVKRRTVRSLVTKLGS-VSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSS 60
+ R V SL+ KL + +EQ RA A ELRLL+K + + R I+EAG+IP L E+L S
Sbjct: 341 DCDRTFVLSLLEKLANGTTEQQRAAA-GELRLLAKRNVDNRVCIAEAGAIPLLVELLSSP 399
Query: 61 SHAFQENAAATLLNLSITSRDS-LMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSL 119
QE++ LLNLSI + + G + I VL++ S A +++AATL SL
Sbjct: 400 DPRTQEHSVTALLNLSINEGNKGAIVDAGAITDIVEVLKNGSME----ARENAAATLFSL 455
Query: 120 LVVDSYRPIIGAKRDIIHSLIEIIK--TRNSPLRSVKDALKALFGIALYPLNRYQVIALG 177
V+D + + I +LI +++ TR R KDA A+F + +Y N+ + + G
Sbjct: 456 SVIDENK-VAIGAAGAIQALISLLEEGTR----RGKKDAATAIFNLCIYQGNKSRAVKGG 510
Query: 178 GVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHR 237
V PL L+ + G G+V++A A++A ++ +E + I VLV+++ G+ R
Sbjct: 511 IVDPLTRLLKDAG-GGMVDEALAILAILSTNQEGKTAIAEAESIPVLVEIIRTGS---PR 566
Query: 238 VKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKIL 294
+ENA +A+L + G +E+ VA + ++ +NG+ + K KA +LL+++
Sbjct: 567 NRENA-AAILWYLCIGNIERLNVAREVGADVA--LKELTENGTDRAKRKAASLLELI 620
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Functions as an E3 ubiquitin ligase with specific E2 ubiquitin-conjugating enzymes. Undergoes auto-ubiquitination. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q0IMG9|SL11_ORYSJ E3 ubiquitin-protein ligase SPL11 OS=Oryza sativa subsp. japonica GN=SPL11 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 101 bits (252), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 97/291 (33%), Positives = 160/291 (54%), Gaps = 15/291 (5%)
Query: 4 KRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHA 63
+R + +L++KL S + + A AELRLL+K +A R I+EAG+IP L +L SS
Sbjct: 365 ERANIDALLSKLCSPDTEEQRSAAAELRLLAKRNANNRICIAEAGAIPLLLSLLSSSDLR 424
Query: 64 FQENAAATLLNLSI--TSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV 121
QE+A LLNLSI ++ S++S+ G + +I HVL++ S A +++AATL SL V
Sbjct: 425 TQEHAVTALLNLSIHEDNKASIISS-GAVPSIVHVLKNGSME----ARENAAATLFSLSV 479
Query: 122 VDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQP 181
+D Y+ IG I +L+ ++ + R KDA ALF + +Y N+ + I G V
Sbjct: 480 IDEYKVTIGGM-GAIPALVVLLGEGSQ--RGKKDAAAALFNLCIYQGNKGRAIRAGLVPL 536
Query: 182 LFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKEN 241
+ LV N A ++++A A+++ ++ E + VLV+++ GT R +EN
Sbjct: 537 IMGLVTNPTGA-LMDEAMAILSILSSHPEGKAAIGAAEPVPVLVEMIGSGTP---RNREN 592
Query: 242 AVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLK 292
A + +L+L + G + + + ++A NG+ +GK KAV LL+
Sbjct: 593 AAAVMLHLCS-GEHHLVHLARAQECGIMVPLRELALNGTDRGKRKAVQLLE 642
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E3 ubiquitin-protein ligase that negatively regulates programmed cell death and disease resistance. Participates in flowering time control by mediating ubiquitination and subsequent proteasomal degradation of SPIN1. Oryza sativa subsp. japonica (taxid: 39947) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|A2ZLU6|SL11_ORYSI Protein spotted leaf 11 OS=Oryza sativa subsp. indica GN=SPL11 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 101 bits (252), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 97/291 (33%), Positives = 160/291 (54%), Gaps = 15/291 (5%)
Query: 4 KRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHA 63
+R + +L++KL S + + A AELRLL+K +A R I+EAG+IP L +L SS
Sbjct: 365 ERANIDALLSKLCSPDTEEQRSAAAELRLLAKRNANNRICIAEAGAIPLLLSLLSSSDLR 424
Query: 64 FQENAAATLLNLSI--TSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV 121
QE+A LLNLSI ++ S++S+ G + +I HVL++ S A +++AATL SL V
Sbjct: 425 TQEHAVTALLNLSIHEDNKASIISS-GAVPSIVHVLKNGSME----ARENAAATLFSLSV 479
Query: 122 VDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQP 181
+D Y+ IG I +L+ ++ + R KDA ALF + +Y N+ + I G V
Sbjct: 480 IDEYKVTIGGM-GAIPALVVLLGEGSQ--RGKKDAAAALFNLCIYQGNKGRAIRAGLVPL 536
Query: 182 LFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKEN 241
+ LV N A ++++A A+++ ++ E + VLV+++ GT R +EN
Sbjct: 537 IMGLVTNPTGA-LMDEAMAILSILSSHPEGKAAIGAAEPVPVLVEMIGSGTP---RNREN 592
Query: 242 AVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLK 292
A + +L+L + G + + + ++A NG+ +GK KAV LL+
Sbjct: 593 AAAVMLHLCS-GEHHLVHLARAQECGIMVPLRELALNGTDRGKRKAVQLLE 642
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Defense related protein that negatively regulates programmed cell death. In vitro, possesses E3 ubiquitin ligase activity. Oryza sativa subsp. indica (taxid: 39946) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q9ZV31|PUB12_ARATH U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 85/287 (29%), Positives = 152/287 (52%), Gaps = 17/287 (5%)
Query: 8 VRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEIL-YSSSHAFQE 66
+ L+ KL S + R A E+RLL+K + R I+ +G+IP L +L S+ QE
Sbjct: 357 IEELLLKLTSQQPEDRRSAAGEIRLLAKQNNHNRVAIAASGAIPLLVNLLTISNDSRTQE 416
Query: 67 NAAATLLNLSITSRD--SLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDS 124
+A ++LNLSI + ++ + G + I HVL+ S A +++AATL SL V+D
Sbjct: 417 HAVTSILNLSICQENKGKIVYSSGAVPGIVHVLQKGSME----ARENAAATLFSLSVIDE 472
Query: 125 YRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFS 184
+ IGA I L+ ++ + R KDA ALF + ++ N+ + + G V P+
Sbjct: 473 NKVTIGAA-GAIPPLVTLLSEGSQ--RGKKDAATALFNLCIFQGNKGKAVRAGLV-PVLM 528
Query: 185 LVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVS 244
++ +G+V+++ +++A ++ + E + VLVD + G+ R KEN+ +
Sbjct: 529 RLLTEPESGMVDESLSILAILSSHPDGKSEVGAADAVPVLVDFIRSGSP---RNKENSAA 585
Query: 245 ALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALL 291
L++L ++ + E K + + D + ++A+NG+ +GK KA LL
Sbjct: 586 VLVHLCSWNQQHLIEAQK---LGIMDLLIEMAENGTDRGKRKAAQLL 629
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q6EUK7|PUB04_ORYSJ U-box domain-containing protein 4 OS=Oryza sativa subsp. japonica GN=PUB4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 102/309 (33%), Positives = 153/309 (49%), Gaps = 41/309 (13%)
Query: 1 MEVKRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSS 60
ME + T R LV L SE +A A E+RLL+K + R I++ G+IP L +L S+
Sbjct: 394 MEANKATARILVRMLEDGSENVKAVAAKEIRLLAKTGKQNRAFIADLGAIPLLCRLLLSN 453
Query: 61 SHAFQENAAATLLNLSI--TSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHS 118
QENA LLNLSI ++ +M G L I VL++ T+ A +++AATL S
Sbjct: 454 DWMAQENAVTALLNLSIFEPNKGRIMEQEGCLRLIVGVLQNGWTTE---AKENAAATLFS 510
Query: 119 LLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYP------LNRYQ 172
L VV +++ +I + + L ++ S R KDA+ ALF ++ +P L
Sbjct: 511 LSVVHNFKKLIMNEPGAVEELASMLTKGTS--RGKKDAVMALFNLSTHPESSARMLESCA 568
Query: 173 VIALGGVQPLFSLVVN----GGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLL 228
V+AL +Q L + V+ G A +++ S I + G E+V I LV L+
Sbjct: 569 VVAL--IQSLRNDTVSEEAAGALALLMKQPS--IVHLVGSSETV--------ITSLVGLM 616
Query: 229 DLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQ----NGSAKGK 284
GT G KENAVSAL + GG + V ++ G+ V Q NG+ + K
Sbjct: 617 RRGTPKG---KENAVSALYEICRRGGSALVQRVAKIP-----GLNTVIQTITLNGTKRAK 668
Query: 285 TKAVALLKI 293
KA ++K+
Sbjct: 669 KKASLIVKM 677
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Possesses E3 ubiquitin-protein ligase in vitro. Oryza sativa subsp. japonica (taxid: 39947) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q9C9A6|PUB10_ARATH U-box domain-containing protein 10 OS=Arabidopsis thaliana GN=PUB10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 89/289 (30%), Positives = 155/289 (53%), Gaps = 15/289 (5%)
Query: 8 VRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHA-FQE 66
+R+LV KL S S + R A++E+R LSK + R +I+EAG+IP L ++L S QE
Sbjct: 343 IRALVCKLSSQSIEDRRTAVSEIRSLSKRSTDNRILIAEAGAIPVLVKLLTSDGDTETQE 402
Query: 67 NAAATLLNLSITSRD-SLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSY 125
NA +LNLSI + L+ G + +I VLR S A +++AATL SL + D
Sbjct: 403 NAVTCILNLSIYEHNKELIMLAGAVTSIVLVLRAGSME----ARENAAATLFSLSLADEN 458
Query: 126 RPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSL 185
+ IIGA I+ +L+++++ +R KDA ALF + +Y N+ + + G V+PL +
Sbjct: 459 KIIIGASGAIM-ALVDLLQY--GSVRGKKDAATALFNLCIYQGNKGRAVRAGIVKPLVKM 515
Query: 186 VVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSA 245
+ + + ++A +++ +A + + + I L+D L R +ENA +
Sbjct: 516 LTDSSSERMADEALTILSVLASNQVAKTAILRANAIPPLIDCL---QKDQPRNRENAAAI 572
Query: 246 LLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKIL 294
LL L E+ + + V + +++++G+ + K KA +LL++L
Sbjct: 573 LLCLCKRDTEKLI-SIGRLGAVVP--LMELSRDGTERAKRKANSLLELL 618
|
Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q9C7R6|PUB17_ARATH U-box domain-containing protein 17 OS=Arabidopsis thaliana GN=PUB17 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 97.8 bits (242), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 92/297 (30%), Positives = 147/297 (49%), Gaps = 15/297 (5%)
Query: 1 MEVKRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSS 60
+E + TV L+ L S+ + A E+RLL+K E R I+EAG+IP+L +L S
Sbjct: 401 VEANKATVSILIKYLADGSQAAQTVAAREIRLLAKTGKENRAYIAEAGAIPHLCRLLTSE 460
Query: 61 SHAFQENAAATLLNLSITSRDS--LMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHS 118
+ QEN+ +LNLSI ++ +M L++I VL + + A +++AATL S
Sbjct: 461 NAIAQENSVTAMLNLSIYEKNKSRIMEEGDCLESIVSVL---VSGLTVEAQENAAATLFS 517
Query: 119 LLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGG 178
L V Y+ I + +L +++ N R KDA+ AL+ ++ +P N ++I GG
Sbjct: 518 LSAVHEYKKRIAIVDQCVEALALLLQ--NGTPRGKKDAVTALYNLSTHPDNCSRMIEGGG 575
Query: 179 VQPLFSLVVNGG-RAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHR 237
V L + N G + ++ Q G E E G L+ ++ GT G
Sbjct: 576 VSSLVGALKNEGVAEEAAGALALLVRQSLGAEAIGKEDSAVAG---LMGMMRCGTPRG-- 630
Query: 238 VKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKIL 294
KENAV+ALL L GG AE+V A +A + + G+ + + KA +L ++
Sbjct: 631 -KENAVAALLELCRSGGAAVAEKVLR-APAIAGLLQTLLFTGTKRARRKAASLARVF 685
|
Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 315 | ||||||
| 224057268 | 305 | predicted protein [Populus trichocarpa] | 0.933 | 0.963 | 0.727 | 1e-116 | |
| 255543953 | 310 | ubiquitin-protein ligase, putative [Rici | 0.933 | 0.948 | 0.724 | 1e-114 | |
| 224072909 | 305 | predicted protein [Populus trichocarpa] | 0.926 | 0.957 | 0.715 | 1e-108 | |
| 296087863 | 311 | unnamed protein product [Vitis vinifera] | 0.987 | 1.0 | 0.643 | 1e-104 | |
| 147864050 | 309 | hypothetical protein VITISV_005390 [Viti | 0.926 | 0.944 | 0.673 | 1e-104 | |
| 225465835 | 309 | PREDICTED: U-box domain-containing prote | 0.926 | 0.944 | 0.670 | 1e-104 | |
| 449458065 | 318 | PREDICTED: protein spotted leaf 11-like | 0.946 | 0.937 | 0.677 | 1e-100 | |
| 356556805 | 325 | PREDICTED: U-box domain-containing prote | 0.977 | 0.947 | 0.594 | 1e-94 | |
| 30680596 | 325 | armadillo/beta-catenin-like repeat-conta | 0.926 | 0.898 | 0.630 | 4e-94 | |
| 356548861 | 326 | PREDICTED: U-box domain-containing prote | 0.977 | 0.944 | 0.586 | 1e-92 |
| >gi|224057268|ref|XP_002299200.1| predicted protein [Populus trichocarpa] gi|222846458|gb|EEE84005.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust.
Identities = 214/294 (72%), Positives = 248/294 (84%)
Query: 1 MEVKRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSS 60
MEVKRRT R LVT+LGSVSEQTR+EALAELRL++K+DAE RP+I+EAG+IPYL E LYSS
Sbjct: 1 MEVKRRTARLLVTRLGSVSEQTRSEALAELRLMTKNDAESRPIIAEAGAIPYLEETLYSS 60
Query: 61 SHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLL 120
SH Q+NAAA LLN+SI+SR +LMSTRGLLDAISHVLRHH+T++S AVQSSAATLHSLL
Sbjct: 61 SHDSQDNAAAILLNISISSRTALMSTRGLLDAISHVLRHHATNSSPFAVQSSAATLHSLL 120
Query: 121 VVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQ 180
V DSYRP+IGAKRDI++SLIEIIK NSP RSVKDALKALFGIAL+PLNR +I LGGV
Sbjct: 121 VDDSYRPVIGAKRDIVYSLIEIIKRPNSPPRSVKDALKALFGIALFPLNRANLIGLGGVA 180
Query: 181 PLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKE 240
LFSLV+ GR GIVEDA+AVIAQIAGC ES EF K G+ VLVDLLD+GTGS RVKE
Sbjct: 181 ALFSLVLKDGRVGIVEDATAVIAQIAGCAESEREFWKVSGVKVLVDLLDVGTGSSERVKE 240
Query: 241 NAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKIL 294
NAV ALLNLV+ GG ++VKEM +GI DV +NG+AKGK+K +ALLK++
Sbjct: 241 NAVGALLNLVSCGGGGVVKQVKEMGPGAVEGIRDVVENGTAKGKSKGIALLKVV 294
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255543953|ref|XP_002513039.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223548050|gb|EEF49542.1| ubiquitin-protein ligase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 213/294 (72%), Positives = 254/294 (86%)
Query: 1 MEVKRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSS 60
MEVKRRT RSLV+KL SVSEQTR+EAL+ELRL++KHD + RP+I+E G+IPYLAE LYSS
Sbjct: 1 MEVKRRTARSLVSKLSSVSEQTRSEALSELRLITKHDPDSRPIIAECGAIPYLAETLYSS 60
Query: 61 SHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLL 120
SH QENAAATLLNLSI++RDSLMSTRGLLDA+ H L HHST+TS AVQSSAATLHSLL
Sbjct: 61 SHTAQENAAATLLNLSISTRDSLMSTRGLLDALGHALSHHSTTTSPLAVQSSAATLHSLL 120
Query: 121 VVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQ 180
+VDSYRPIIG+KRDI++SLI+I+K+ NSP RSVKDALKA+FGIALYPLNR +I LG V
Sbjct: 121 IVDSYRPIIGSKRDIVYSLIDIVKSPNSPPRSVKDALKAMFGIALYPLNRCTLIDLGAVA 180
Query: 181 PLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKE 240
PLFSLV+ GR GIVEDA+AV+AQIAGCEES EF + G+G+L+DLLDL TGS R+KE
Sbjct: 181 PLFSLVLKDGRVGIVEDATAVVAQIAGCEESEGEFARYSGVGILIDLLDLATGSSLRIKE 240
Query: 241 NAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKIL 294
NAVSALLNLV GGER A +V++MA V +GI +VA+NG++KGK KAVAL+K++
Sbjct: 241 NAVSALLNLVRCGGERVAADVRDMAAIVVEGIKEVAENGTSKGKAKAVALVKVI 294
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224072909|ref|XP_002303934.1| predicted protein [Populus trichocarpa] gi|222841366|gb|EEE78913.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 209/292 (71%), Positives = 237/292 (81%)
Query: 1 MEVKRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSS 60
MEVK RT RSLV KLGSVSE TR+EALAELRL++K+DAE R +I+EAG+IPYLAE LYSS
Sbjct: 1 MEVKHRTARSLVKKLGSVSEITRSEALAELRLMTKNDAESRLIIAEAGAIPYLAETLYSS 60
Query: 61 SHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLL 120
SH Q+NAAATLLN+SI+SR LMSTRGLLDAISHVLRHH+T++S +AVQSSAATL+SLL
Sbjct: 61 SHDSQDNAAATLLNISISSRAPLMSTRGLLDAISHVLRHHATNSSPSAVQSSAATLYSLL 120
Query: 121 VVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQ 180
V DSYR IIGAKRDI +SLIEIIK NSP RS+KDALKALFGIAL+PLNR +I LG
Sbjct: 121 VDDSYRSIIGAKRDIAYSLIEIIKRPNSPPRSIKDALKALFGIALFPLNRAGLIDLGAAG 180
Query: 181 PLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKE 240
LFSLV+ GR GIVED +AVIAQIAGCEES F K G+ VL DLLD+GTGS R KE
Sbjct: 181 ALFSLVLKDGRVGIVEDTTAVIAQIAGCEESESAFWKVSGVKVLEDLLDVGTGSSERTKE 240
Query: 241 NAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLK 292
NAV ALLNLV GG EVKEM +GI DV +NG+AKGK+KA+ALLK
Sbjct: 241 NAVGALLNLVRCGGGGVMREVKEMRPGAVEGIKDVRENGTAKGKSKAIALLK 292
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296087863|emb|CBI35119.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 202/314 (64%), Positives = 243/314 (77%), Gaps = 3/314 (0%)
Query: 1 MEVKRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSS 60
MEVKRRT RSLV +L SVS+QTR EAL ELRL+SKHD + R I++AG++PYL E LYS+
Sbjct: 1 MEVKRRTARSLVARLSSVSQQTRTEALCELRLISKHDPDSRCFIADAGAVPYLCETLYSA 60
Query: 61 SHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLL 120
QENAAATLLNLSI+SR LMSTRGLLDA+SH LR S S+S AA+Q+ AATL+SLL
Sbjct: 61 LPLEQENAAATLLNLSISSRQLLMSTRGLLDALSHALR--SPSSSPAAIQACAATLYSLL 118
Query: 121 VVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQ 180
V D YRPIIGAKRDI+++L++II+T ++P RS+KDALKALFGI+LYPLNR ++ LG V
Sbjct: 119 VDDDYRPIIGAKRDIVYALVDIIRTPHAPPRSIKDALKALFGISLYPLNRASMVGLGAVA 178
Query: 181 PLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKE 240
LF+L V GR GIVEDA+AVIAQIAGCEE D F+K GIG+LVDLLD TGS R KE
Sbjct: 179 ALFTLAVKDGRVGIVEDATAVIAQIAGCEEGGDAFRKVSGIGILVDLLDPSTGSSIRTKE 238
Query: 241 NAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDDGNM 300
NAVSALLNLV GGER A +++E M + DGIA VA GS KGK+KA+ALLK+L D G
Sbjct: 239 NAVSALLNLVQCGGERIAGDMREAGMGLYDGIAVVADGGSPKGKSKAIALLKLL-DGGRE 297
Query: 301 NITMTNEEILKKLK 314
+N + +K K
Sbjct: 298 PRFASNPDRKEKKK 311
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147864050|emb|CAN81127.1| hypothetical protein VITISV_005390 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust.
Identities = 198/294 (67%), Positives = 234/294 (79%), Gaps = 2/294 (0%)
Query: 1 MEVKRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSS 60
MEVKRRT RSLV +L SVS+QTR EAL ELRL+SKHD + R I++AG++PYL E LYS+
Sbjct: 1 MEVKRRTARSLVARLSSVSQQTRTEALCELRLISKHDPDSRCFIADAGAVPYLCETLYSA 60
Query: 61 SHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLL 120
QENAAATLLNLSI+SR LMSTRGLLDA+SH LR S S+S AA+Q+ AATL+SLL
Sbjct: 61 LPLEQENAAATLLNLSISSRQLLMSTRGLLDALSHALR--SPSSSPAAIQACAATLYSLL 118
Query: 121 VVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQ 180
V D YRPIIGAKRDI+++L++II+T ++P RS+KDALKALFGI+LYPLNR ++ LG V
Sbjct: 119 VDDDYRPIIGAKRDIVYALVDIIRTPHAPPRSIKDALKALFGISLYPLNRASMVGLGAVA 178
Query: 181 PLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKE 240
LFSL V GR GIVEDA+AVIAQIAGCEE D F+K GIGVLVDLLD TGS R KE
Sbjct: 179 ALFSLAVKDGRVGIVEDATAVIAQIAGCEEGGDAFRKVSGIGVLVDLLDPSTGSSIRTKE 238
Query: 241 NAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKIL 294
NAVSALLNL GGER A +++E M + DGIA VA GS KGK+KA+ALLK+L
Sbjct: 239 NAVSALLNLAQCGGERIAGDMREAGMGLYDGIAVVADGGSPKGKSKAIALLKLL 292
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225465835|ref|XP_002264402.1| PREDICTED: U-box domain-containing protein 4 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust.
Identities = 197/294 (67%), Positives = 235/294 (79%), Gaps = 2/294 (0%)
Query: 1 MEVKRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSS 60
MEVKRRT RSLV +L SVS+QTR EAL ELRL+SKHD + R I++AG++PYL E LYS+
Sbjct: 1 MEVKRRTARSLVARLSSVSQQTRTEALCELRLISKHDPDSRCFIADAGAVPYLCETLYSA 60
Query: 61 SHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLL 120
QENAAATLLNLSI+SR LMSTRGLLDA+SH LR S S+S AA+Q+ AATL+SLL
Sbjct: 61 LPLEQENAAATLLNLSISSRQLLMSTRGLLDALSHALR--SPSSSPAAIQACAATLYSLL 118
Query: 121 VVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQ 180
V D YRPIIGAKRDI+++L++II+T ++P RS+KDALKALFGI+LYPLNR ++ LG V
Sbjct: 119 VDDDYRPIIGAKRDIVYALVDIIRTPHAPPRSIKDALKALFGISLYPLNRASMVGLGAVA 178
Query: 181 PLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKE 240
LF+L V GR GIVEDA+AVIAQIAGCEE D F+K GIG+LVDLLD TGS R KE
Sbjct: 179 ALFTLAVKDGRVGIVEDATAVIAQIAGCEEGGDAFRKVSGIGILVDLLDPSTGSSIRTKE 238
Query: 241 NAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKIL 294
NAVSALLNLV GGER A +++E M + DGIA VA GS KGK+KA+ALLK+L
Sbjct: 239 NAVSALLNLVQCGGERIAGDMREAGMGLYDGIAVVADGGSPKGKSKAIALLKLL 292
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449458065|ref|XP_004146768.1| PREDICTED: protein spotted leaf 11-like [Cucumis sativus] gi|449515907|ref|XP_004164989.1| PREDICTED: protein spotted leaf 11-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 202/298 (67%), Positives = 246/298 (82%)
Query: 1 MEVKRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSS 60
MEVK R V +LV++L SVSEQ R E+L+ELRL++K+DA+ R +I AG++PYL+E LYSS
Sbjct: 1 MEVKGRAVSTLVSRLSSVSEQIRCESLSELRLMTKNDAQSRSLIVHAGALPYLSETLYSS 60
Query: 61 SHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLL 120
SH QE+AAATLLNLSI+SR++LMST GLLDAISHVL HH++S+SS+AVQS AATLHSLL
Sbjct: 61 SHLPQEDAAATLLNLSISSREALMSTHGLLDAISHVLSHHNSSSSSSAVQSCAATLHSLL 120
Query: 121 VVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQ 180
VVD YRPIIG+KRDII+SL++I+K R SP RS+KDALKALFGIAL+ NR ++ LG +
Sbjct: 121 VVDEYRPIIGSKRDIIYSLVDILKYRKSPQRSIKDALKALFGIALHQSNRSTMVDLGVIP 180
Query: 181 PLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKE 240
PLFSLVV GG AGIVEDASAV+AQ+AGCEES F++ G+GVLVDLLD GTGS R KE
Sbjct: 181 PLFSLVVVGGHAGIVEDASAVVAQVAGCEESELAFRRVSGLGVLVDLLDSGTGSSLRTKE 240
Query: 241 NAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDDG 298
NAVSALLNL +GG+RAAE+VK++ + IADVA NGS KGKTKAV LLK++ G
Sbjct: 241 NAVSALLNLAKWGGDRAAEDVKDLGSGILSEIADVAVNGSEKGKTKAVELLKMVASGG 298
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356556805|ref|XP_003546711.1| PREDICTED: U-box domain-containing protein 11-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 352 bits (903), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 185/311 (59%), Positives = 241/311 (77%), Gaps = 3/311 (0%)
Query: 1 MEVKRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSS 60
ME RT+RSLV+KL SVSE R +AL++LRL+SK E RP+I++AG+IP++AE LY S
Sbjct: 1 METNPRTIRSLVSKLSSVSEAARVDALSQLRLMSKQSPETRPLIADAGAIPFVAETLYCS 60
Query: 61 SHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLL 120
SH QENAAATLLNLSIT ++ LMSTRG+LDAI+HV+ HH+T++S AAVQS+AAT+HSLL
Sbjct: 61 SHPPQENAAATLLNLSITQKEPLMSTRGVLDAIAHVISHHNTTSSPAAVQSAAATIHSLL 120
Query: 121 -VVDSYRPIIGAKRDIIHSLIEIIKTR-NSPLRSVKDALKALFGIALYPLNRYQVIALGG 178
VDSYRP++G+KR+I++SLI+I++ +SP R++KD+LKALF IAL+PLNR +I LG
Sbjct: 121 SSVDSYRPVVGSKREIVYSLIDILRCHVSSPPRTIKDSLKALFAIALHPLNRSTMINLGA 180
Query: 179 VQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRV 238
V LFSLV GR GIVEDA+AVIAQ+AGCE++ + F K G+GVL DLLDL T + R
Sbjct: 181 VPALFSLVAKDGRVGIVEDATAVIAQVAGCEDAAEAFFKASGVGVLADLLDLATAASMRT 240
Query: 239 KENAVSALLNLVNFGGERAAEEVKE-MAMQVADGIADVAQNGSAKGKTKAVALLKILVDD 297
KENAVSALLNLV GG++ A +V++ +A DGIADV GS KGK KA LLK+L+ +
Sbjct: 241 KENAVSALLNLVRCGGDKVAADVRDAVAFGALDGIADVRDGGSGKGKNKAAELLKVLLGE 300
Query: 298 GNMNITMTNEE 308
N ++ N +
Sbjct: 301 NNGDVVALNSD 311
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30680596|ref|NP_849613.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] gi|110738451|dbj|BAF01151.1| hypothetical protein [Arabidopsis thaliana] gi|332190153|gb|AEE28274.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 350 bits (899), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 188/298 (63%), Positives = 230/298 (77%), Gaps = 6/298 (2%)
Query: 4 KRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHA 63
KRRT+ ++V++L SVSEQTRA ALAELRL+SK D + R +I++AG+IPYLAE LYSSSH+
Sbjct: 5 KRRTMSTIVSRLSSVSEQTRAAALAELRLISKQDPDSRLIIADAGAIPYLAETLYSSSHS 64
Query: 64 FQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVD 123
QENAAATLLNLSITSR+ LMS+RGLLDA+SH LRHH T+TS AAVQSSAAT++SLL+ +
Sbjct: 65 SQENAAATLLNLSITSREPLMSSRGLLDALSHALRHHDTTTSPAAVQSSAATIYSLLIAE 124
Query: 124 -SYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPL 182
SYRPIIG+KRDII SLI II+ +S RS+KD+LKALF IALYP+NR +I+LG + L
Sbjct: 125 ESYRPIIGSKRDIIFSLIHIIRYPDSHPRSIKDSLKALFAIALYPMNRSTMISLGAIPAL 184
Query: 183 FSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENA 242
FSL+V R GIVEDA+AV+AQ+AGCE+S D ++ G VL DLLD TGS R+KEN+
Sbjct: 185 FSLIVKDSRCGIVEDATAVMAQVAGCEDSEDGMRRVSGANVLADLLDPCTGSSLRIKENS 244
Query: 243 VSALLNLVNFGGERAAEEVKEMAMQVAD-----GIADVAQNGSAKGKTKAVALLKILV 295
V ALLNL GG A EV AD GI VA+NGS KG+ KAV LLK++V
Sbjct: 245 VGALLNLARCGGAAARSEVAAAVASGADEGAMEGIVYVAENGSLKGRKKAVDLLKLVV 302
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356548861|ref|XP_003542817.1| PREDICTED: U-box domain-containing protein 11-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 345 bits (886), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 183/312 (58%), Positives = 242/312 (77%), Gaps = 4/312 (1%)
Query: 1 MEVKRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSS 60
M+ RT+RSLV+KL SVSE R +AL++LRL+SK E RP+I++AG+IPY+AE LYSS
Sbjct: 1 MDPNPRTIRSLVSKLSSVSEAARIDALSQLRLMSKQSPETRPIIAQAGAIPYIAETLYSS 60
Query: 61 SHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLL 120
SH QE+AA TLLNLSIT ++ LMSTRG+LDAI+HV+ HH T++S AVQS+AAT+HSLL
Sbjct: 61 SHPSQEDAATTLLNLSITLKEPLMSTRGVLDAIAHVISHHHTTSSPPAVQSAAATIHSLL 120
Query: 121 -VVDSYRPIIGAKRDIIHSLIEIIKTR-NSPLRSVKDALKALFGIALYPLNRYQVIALGG 178
VDSYRP++G+KR+I++SLI+I++ +SP R++KD+LKALF IAL+P+NR +I LG
Sbjct: 121 SSVDSYRPVVGSKREIVYSLIDILRCHLSSPPRTIKDSLKALFAIALHPINRSTMINLGA 180
Query: 179 VQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCC-GIGVLVDLLDLGTGSGHR 237
V LFSLV+ GR GIVEDA+AVIAQ+AGCE++VD F+K G+GVL DLLDL T + R
Sbjct: 181 VPALFSLVLKDGRVGIVEDATAVIAQVAGCEDAVDAFRKASGGVGVLADLLDLATAASMR 240
Query: 238 VKENAVSALLNLVNFGGERAAEEVKE-MAMQVADGIADVAQNGSAKGKTKAVALLKILVD 296
KENAVSALLNLV GG++ A +V++ +A DGIADV GS KGK KA L+K+L+
Sbjct: 241 TKENAVSALLNLVRCGGDKVAADVRDVVAFGALDGIADVRDGGSVKGKNKAAELMKVLLG 300
Query: 297 DGNMNITMTNEE 308
N ++ + N +
Sbjct: 301 QNNGDVVVFNSD 312
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 315 | ||||||
| TAIR|locus:1005716696 | 325 | AT1G08315 [Arabidopsis thalian | 0.946 | 0.916 | 0.539 | 5.1e-74 | |
| TAIR|locus:2045334 | 829 | PUB4 "plant U-box 4" [Arabidop | 0.869 | 0.330 | 0.295 | 2.1e-20 | |
| UNIPROTKB|Q0IMG9 | 694 | SPL11 "E3 ubiquitin-protein li | 0.873 | 0.396 | 0.294 | 2.5e-20 | |
| TAIR|locus:2017719 | 612 | AT1G23030 [Arabidopsis thalian | 0.869 | 0.447 | 0.277 | 3.2e-20 | |
| TAIR|locus:2082682 | 632 | PUB14 "plant U-box 14" [Arabid | 0.901 | 0.449 | 0.272 | 3.2e-19 | |
| TAIR|locus:2158252 | 707 | AT5G67340 [Arabidopsis thalian | 0.860 | 0.383 | 0.283 | 1.4e-18 | |
| TAIR|locus:2013688 | 729 | PUB17 "plant U-box 17" [Arabid | 0.892 | 0.385 | 0.283 | 2.4e-18 | |
| TAIR|locus:2013990 | 628 | AT1G71020 [Arabidopsis thalian | 0.869 | 0.436 | 0.262 | 9.6e-17 | |
| TAIR|locus:2162276 | 660 | PUB15 "Plant U-Box 15" [Arabid | 0.866 | 0.413 | 0.263 | 1e-16 | |
| TAIR|locus:2075140 | 660 | PUB13 "plant U-box 13" [Arabid | 0.771 | 0.368 | 0.290 | 1.7e-16 |
| TAIR|locus:1005716696 AT1G08315 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 747 (268.0 bits), Expect = 5.1e-74, P = 5.1e-74
Identities = 165/306 (53%), Positives = 205/306 (66%)
Query: 1 MEV-KRRTVRSLVTKLGSVSEQTXXXXXXXXXXXSKHDAEIRPMISEAGSIPYLAEILYS 59
ME KRRT+ ++V++L SVSEQT SK D + R +I++AG+IPYLAE LYS
Sbjct: 1 METAKRRTMSTIVSRLSSVSEQTRAAALAELRLISKQDPDSRLIIADAGAIPYLAETLYS 60
Query: 60 SSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHXXXXXXXXXXXXXXXLHSL 119
SSH+ QENAAATLLNLSITSR+ LMS+RGLLDA+SH LRHH ++SL
Sbjct: 61 SSHSSQENAAATLLNLSITSREPLMSSRGLLDALSHALRHHDTTTSPAAVQSSAATIYSL 120
Query: 120 LVVD-SYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGG 178
L+ + SYRPIIG+KRDII SLI II+ +S RS+KD+LKALF IALYP+NR +I+LG
Sbjct: 121 LIAEESYRPIIGSKRDIIFSLIHIIRYPDSHPRSIKDSLKALFAIALYPMNRSTMISLGA 180
Query: 179 VQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIXXXXXXXXXXTGSGHRV 238
+ LFSL+V R GIVEDA+AV+AQ+AGCE+S D ++ G TGS R+
Sbjct: 181 IPALFSLIVKDSRCGIVEDATAVMAQVAGCEDSEDGMRRVSGANVLADLLDPCTGSSLRI 240
Query: 239 KENAVSALLNLVNFGGERAAEEVKEMAMQVAD-----GIADVAQNGSAKGKTKAVALLKI 293
KEN+V ALLNL GG A EV AD GI VA+NGS KG+ KAV LLK+
Sbjct: 241 KENSVGALLNLARCGGAAARSEVAAAVASGADEGAMEGIVYVAENGSLKGRKKAVDLLKL 300
Query: 294 LVDDGN 299
+V GN
Sbjct: 301 VVS-GN 305
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| TAIR|locus:2045334 PUB4 "plant U-box 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 252 (93.8 bits), Expect = 2.1e-20, P = 2.1e-20
Identities = 86/291 (29%), Positives = 140/291 (48%)
Query: 2 EVKRRTVRSLVTKLGSVSEQTXXXXXXXXXXXSKHDAEIRPMISEAGSIPYLAEILYSSS 61
EV+ + V+ LV +L S S T +KH+ + R +I +G+I L E+LYS+
Sbjct: 541 EVETQ-VKKLVEELKSSSLDTQRQATAELRLLAKHNMDNRIVIGNSGAIVLLVELLYSTD 599
Query: 62 HAFQENAAATLLNLSITSRDS-LMSTRGLLDAISHVLRHHXXXXXXXXXXXXXXXLHSLL 120
A QENA LLNLSI + ++ G ++ + HVL + L SL
Sbjct: 600 SATQENAVTALLNLSINDNNKKAIADAGAIEPLIHVLEN----GSSEAKENSAATLFSLS 655
Query: 121 VVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQ 180
V++ + IG + I L++++ N R KDA ALF ++++ N+ ++ G V+
Sbjct: 656 VIEENKIKIG-QSGAIGPLVDLLG--NGTPRGKKDAATALFNLSIHQENKAMIVQSGAVR 712
Query: 181 PLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIXXXXXXXXXXTGSGHRVKE 240
L L+ AG+V+ A AV+A +A E + + GI + G KE
Sbjct: 713 YLIDLM--DPAAGMVDKAVAVLANLATIPEGRNAIGQEGGIPLLVEVVELGSARG---KE 767
Query: 241 NAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALL 291
NA +ALL L G ++E A+ + ++Q+G+ + + KA ALL
Sbjct: 768 NAAAALLQLSTNSGRFCNMVLQEGAVPP---LVALSQSGTPRAREKAQALL 815
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| UNIPROTKB|Q0IMG9 SPL11 "E3 ubiquitin-protein ligase SPL11" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 250 (93.1 bits), Expect = 2.5e-20, P = 2.5e-20
Identities = 86/292 (29%), Positives = 141/292 (48%)
Query: 4 KRRTVRSLVTKLGSVSEQTXXXXXXXXXXXSKHDAEIRPMISEAGSIPYLAEILYSSSHA 63
+R + +L++KL S + +K +A R I+EAG+IP L +L SS
Sbjct: 365 ERANIDALLSKLCSPDTEEQRSAAAELRLLAKRNANNRICIAEAGAIPLLLSLLSSSDLR 424
Query: 64 FQENAAATLLNLSI--TSRDSLMSTRGLLDAISHVLRHHXXXXXXXXXXXXXXXLHSLLV 121
QE+A LLNLSI ++ S++S+ G + +I HVL++ L SL V
Sbjct: 425 TQEHAVTALLNLSIHEDNKASIISS-GAVPSIVHVLKN----GSMEARENAAATLFSLSV 479
Query: 122 VDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQP 181
+D Y+ IG I +L+ ++ + R KDA ALF + +Y N+ + I G V
Sbjct: 480 IDEYKVTIGGM-GAIPALVVLLGEGSQ--RGKKDAAAALFNLCIYQGNKGRAIRAGLVPL 536
Query: 182 LFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIXXXXXXXXXXTGSGH-RVKE 240
+ LV N A ++++A A+++ ++ S E K G GSG R +E
Sbjct: 537 IMGLVTNPTGA-LMDEAMAILSILS----SHPEGKAAIGAAEPVPVLVEMIGSGTPRNRE 591
Query: 241 NAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLK 292
NA + +L+L + G + + + ++A NG+ +GK KAV LL+
Sbjct: 592 NAAAVMLHLCS-GEHHLVHLARAQECGIMVPLRELALNGTDRGKRKAVQLLE 642
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| TAIR|locus:2017719 AT1G23030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 248 (92.4 bits), Expect = 3.2e-20, P = 3.2e-20
Identities = 80/288 (27%), Positives = 137/288 (47%)
Query: 8 VRSLVTKLGSVSEQTXXXXXXXXXXXSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQEN 67
+R+LV +L S S + SK + R +I+EAG+IP L +L S A QEN
Sbjct: 333 IRALVQRLSSRSTEDRRNAVSEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVATQEN 392
Query: 68 AAATLLNLSITSRDS-LMSTRGLLDAISHVLRHHXXXXXXXXXXXXXXXLHSLLVVDSYR 126
A +LNLSI + L+ G + +I VLR L SL + D +
Sbjct: 393 AITCVLNLSIYENNKELIMFAGAVTSIVQVLR----AGTMEARENAAATLFSLSLADENK 448
Query: 127 PIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLV 186
IIG I +L+++++ N R KDA ALF + +Y N+ + + G V L ++
Sbjct: 449 IIIGGS-GAIPALVDLLE--NGTPRGKKDAATALFNLCIYHGNKGRAVRAGIVTALVKML 505
Query: 187 VNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIXXXXXXXXXXTGSGHRVKENAVSAL 246
+ R +V++A +++ +A +++ K + R +ENA + L
Sbjct: 506 SDSTRHRMVDEALTILSVLANNQDAKSAIVKANTLPALIGILQTDQT---RNRENAAAIL 562
Query: 247 LNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKIL 294
L+L E+ + + V + D+++NG+ +GK KA++LL++L
Sbjct: 563 LSLCKRDTEKLIT-IGRLGAVVP--LMDLSKNGTERGKRKAISLLELL 607
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| TAIR|locus:2082682 PUB14 "plant U-box 14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 239 (89.2 bits), Expect = 3.2e-19, P = 3.2e-19
Identities = 82/301 (27%), Positives = 144/301 (47%)
Query: 5 RRTVRSLVTKLGSVSEQTXXXXXXXXXXXSKHDAEIRPMISEAGSIPYLAEILYSSSHAF 64
R V SL+ KL + + + +K + + R I+EAG+IP L E+L S
Sbjct: 344 RTFVLSLLEKLANGTTEQQRAAAGELRLLAKRNVDNRVCIAEAGAIPLLVELLSSPDPRT 403
Query: 65 QENAAATLLNLSIT--SRDSLMSTRGLLDAISHVLRHHXXXXXXXXXXXXXXXLHSLLVV 122
QE++ LLNLSI ++ +++ + D + VL++ L SL V+
Sbjct: 404 QEHSVTALLNLSINEGNKGAIVDAGAITDIVE-VLKN----GSMEARENAAATLFSLSVI 458
Query: 123 DSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPL 182
D + IGA I +LI +++ R KDA A+F + +Y N+ + + G V PL
Sbjct: 459 DENKVAIGAA-GAIQALISLLE--EGTRRGKKDAATAIFNLCIYQGNKSRAVKGGIVDPL 515
Query: 183 FSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIXXXXXXXXXXTGSGHRVKENA 242
L+ + G G+V++A A++A ++ +E + I TGS R +ENA
Sbjct: 516 TRLLKDAG-GGMVDEALAILAILSTNQEGKTAIAEAESIPVLVEIIR--TGSP-RNRENA 571
Query: 243 VSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDDGNMNI 302
+A+L + G +E+ VA + ++ +NG+ + K KA +LL+++ + +
Sbjct: 572 -AAILWYLCIGNIERLNVAREVGADVA--LKELTENGTDRAKRKAASLLELIQQTEGVAV 628
Query: 303 T 303
T
Sbjct: 629 T 629
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| TAIR|locus:2158252 AT5G67340 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 234 (87.4 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 81/286 (28%), Positives = 132/286 (46%)
Query: 8 VRSLVTKLGSVSEQTXXXXXXXXXXXSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQEN 67
V+ L+ L S S T +++ + R +I+ +IP L +LYS+ Q +
Sbjct: 423 VKKLIDDLKSSSLDTQREATARIRILARNSTDNRIVIARCEAIPSLVSLLYSTDERIQAD 482
Query: 68 AAATLLNLSITSRD-SLMSTRGLLDAISHVLRHHXXXXXXXXXXXXXXXLHSLLVVDSYR 126
A LLNLSI + SL++ G + + HVL+ L SL V++ Y+
Sbjct: 483 AVTCLLNLSINDNNKSLIAESGAIVPLIHVLK---TGYLEEAKANSAATLFSLSVIEEYK 539
Query: 127 PIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLV 186
IG + I L++++ + + L KDA ALF ++++ N+ +VI G V+ L L+
Sbjct: 540 TEIG-EAGAIEPLVDLLGSGS--LSGKKDAATALFNLSIHHENKTKVIEAGAVRYLVELM 596
Query: 187 VNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIXXXXXXXXXXTGSGHRVKENAVSAL 246
G+VE A V+A +A E + GI + G KENA +AL
Sbjct: 597 --DPAFGMVEKAVVVLANLATVREGKIAIGEEGGIPVLVEVVELGSARG---KENATAAL 651
Query: 247 LNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLK 292
L L + ++E V + + ++G+A+GK KA LLK
Sbjct: 652 LQLCTHSPKFCNNVIRE---GVIPPLVALTKSGTARGKEKAQNLLK 694
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| TAIR|locus:2013688 PUB17 "plant U-box 17" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 232 (86.7 bits), Expect = 2.4e-18, P = 2.4e-18
Identities = 84/296 (28%), Positives = 130/296 (43%)
Query: 1 MEVKRRTVRSLVTKLGSVSEQTXXXXXXXXXXXSKHDAEIRPMISEAGSIPYLAEILYSS 60
+E + TV L+ L S+ +K E R I+EAG+IP+L +L S
Sbjct: 401 VEANKATVSILIKYLADGSQAAQTVAAREIRLLAKTGKENRAYIAEAGAIPHLCRLLTSE 460
Query: 61 SHAFQENAAATLLNLSITSRDS--LMSTRGLLDAISHVLRHHXXXXXXXXXXXXXXXLHS 118
+ QEN+ +LNLSI ++ +M L++I VL L S
Sbjct: 461 NAIAQENSVTAMLNLSIYEKNKSRIMEEGDCLESIVSVL---VSGLTVEAQENAAATLFS 517
Query: 119 LLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGG 178
L V Y+ I + +L +++ N R KDA+ AL+ ++ +P N ++I GG
Sbjct: 518 LSAVHEYKKRIAIVDQCVEALALLLQ--NGTPRGKKDAVTALYNLSTHPDNCSRMIEGGG 575
Query: 179 VQPLFSLVVNGGRAGIVEDASAVIA-QIAGCEESVDEFKKCCGIXXXXXXXXXXTGSGHR 237
V L + N G A A A++ Q G E E G+ G+ R
Sbjct: 576 VSSLVGALKNEGVAEEAAGALALLVRQSLGAEAIGKEDSAVAGLMGMMR-----CGTP-R 629
Query: 238 VKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKI 293
KENAV+ALL L GG AE+V A +A + + G+ + + KA +L ++
Sbjct: 630 GKENAVAALLELCRSGGAAVAEKVLR-APAIAGLLQTLLFTGTKRARRKAASLARV 684
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| TAIR|locus:2013990 AT1G71020 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 216 (81.1 bits), Expect = 9.6e-17, P = 9.6e-17
Identities = 76/289 (26%), Positives = 136/289 (47%)
Query: 8 VRSLVTKLGSVSEQTXXXXXXXXXXXSKHDAEIRPMISEAGSIPYLAEILYSSSHA-FQE 66
+R+LV KL S S + SK + R +I+EAG+IP L ++L S QE
Sbjct: 343 IRALVCKLSSQSIEDRRTAVSEIRSLSKRSTDNRILIAEAGAIPVLVKLLTSDGDTETQE 402
Query: 67 NAAATLLNLSITSRDS-LMSTRGLLDAISHVLRHHXXXXXXXXXXXXXXXLHSLLVVDSY 125
NA +LNLSI + L+ G + +I VLR L SL + D
Sbjct: 403 NAVTCILNLSIYEHNKELIMLAGAVTSIVLVLR----AGSMEARENAAATLFSLSLADEN 458
Query: 126 RPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSL 185
+ IIGA I+ +L+++++ + +R KDA ALF + +Y N+ + + G V+PL +
Sbjct: 459 KIIIGASGAIM-ALVDLLQYGS--VRGKKDAATALFNLCIYQGNKGRAVRAGIVKPLVKM 515
Query: 186 VVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIXXXXXXXXXXTGSGHRVKENAVSA 245
+ + + ++A +++ +A + + + I R +ENA +
Sbjct: 516 LTDSSSERMADEALTILSVLASNQVAKTAILRANAIPPLIDCLQKDQP---RNRENAAAI 572
Query: 246 LLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKIL 294
LL L E+ + + V + +++++G+ + K KA +LL++L
Sbjct: 573 LLCLCKRDTEKLIS-IGRLGAVVP--LMELSRDGTERAKRKANSLLELL 618
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| TAIR|locus:2162276 PUB15 "Plant U-Box 15" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 216 (81.1 bits), Expect = 1.0e-16, P = 1.0e-16
Identities = 76/288 (26%), Positives = 130/288 (45%)
Query: 8 VRSLVTKLGSVSEQTXXXXXXXXXXXSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQEN 67
V LV L S + ++ + E R +I+ AG+IP L ++L QEN
Sbjct: 381 VSLLVEALSSSQLEEQRRSVKQMRLLARENPENRVLIANAGAIPLLVQLLSYPDSGIQEN 440
Query: 68 AAATLLNLSITS-RDSLMSTRGLLDAISHVLRHHXXXXXXXXXXXXXXXLHSLLVVDSYR 126
A TLLNLSI L+S G + I +L + L SL ++D +
Sbjct: 441 AVTTLLNLSIDEVNKKLISNEGAIPNIIEILEN----GNREARENSAAALFSLSMLDENK 496
Query: 127 PIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLV 186
IG I L+++++ + LR KDAL ALF ++L N+ + I G VQPL +L+
Sbjct: 497 VTIGLSNGI-PPLVDLLQ--HGTLRGKKDALTALFNLSLNSANKGRAIDAGIVQPLLNLL 553
Query: 187 VNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIXXXXXXXXXXTGSGHRVKENAVSAL 246
+ G++++A +++ +A E + I T KE A S L
Sbjct: 554 KDKN-LGMIDEALSILLLLASHPEGRQAIGQLSFIETLVEFIRQGTPKN---KECATSVL 609
Query: 247 LNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKIL 294
L L G ++ + + V + + ++ +G+ + + KA AL++++
Sbjct: 610 LEL---GSNNSSFILAALQFGVYEYLVEITTSGTNRAQRKANALIQLI 654
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| TAIR|locus:2075140 PUB13 "plant U-box 13" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 214 (80.4 bits), Expect = 1.7e-16, P = 1.7e-16
Identities = 76/262 (29%), Positives = 127/262 (48%)
Query: 34 SKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSI--TSRDSLMSTRGLLD 91
+K +A+ R I+EAG+IP L +L + QE++ LLNLSI ++ +++S G +
Sbjct: 380 AKRNADNRVAIAEAGAIPLLVGLLSTPDSRIQEHSVTALLNLSICENNKGAIVSA-GAIP 438
Query: 92 AISHVLRHHXXXXXXXXXXXXXXXLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLR 151
I VL+ L SL V+D + IGA I L+ ++ R
Sbjct: 439 GIVQVLKK----GSMEARENAAATLFSLSVIDENKVTIGAL-GAIPPLVVLLNEGTQ--R 491
Query: 152 SVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEES 211
KDA ALF + +Y N+ + I G + L L+ G +G+V++A A++A ++ S
Sbjct: 492 GKKDAATALFNLCIYQGNKGKAIRAGVIPTLTRLLTEPG-SGMVDEALAILAILS----S 546
Query: 212 VDEFKKCCGIXXXXXXXXXXTGSGH-RVKENAVSALLNLVNFGGERAAEEVKEMAMQVAD 270
E K G +G R +ENA + L++L + G + E +++ +
Sbjct: 547 HPEGKAIIGSSDAVPSLVEFIRTGSPRNRENAAAVLVHLCS-GDPQHLVEAQKLGLM--G 603
Query: 271 GIADVAQNGSAKGKTKAVALLK 292
+ D+A NG+ +GK KA LL+
Sbjct: 604 PLIDLAGNGTDRGKRKAAQLLE 625
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | fgenesh4_pm.C_LG_I000086 | hypothetical protein (305 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 315 | |||
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 1e-07 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 2e-05 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 1e-04 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 0.002 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 1e-07
Identities = 72/328 (21%), Positives = 123/328 (37%), Gaps = 44/328 (13%)
Query: 4 KRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHA 63
R V+ L++ LG SEQ + A+A L +L+ E + I+ AG IP L ++L + S
Sbjct: 444 GREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQK 503
Query: 64 FQENAAATLLNLSITSRD---------------------SLMSTRGLLDAISHVLRHHST 102
+E++A L NL S D ++ ++R
Sbjct: 504 AKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADA 563
Query: 103 ST--------SSAAVQSSAATLH---SLLVVDSYRPII---GAKRDIIHSLIEIIKTRNS 148
+T +S L +L V S ++ A D + +LI+++ +
Sbjct: 564 ATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKE 623
Query: 149 PLR-SVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG 207
+ L +F + + + P L+ N A + A A+ A
Sbjct: 624 ETQEKAASVLADIF--SSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRS 681
Query: 208 CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQ 267
+E+ + L+ L S V E AV AL NL++ E AAE + E
Sbjct: 682 IKENRK--VSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLS-DPEVAAEALAE---D 735
Query: 268 VADGIADVAQNGSAKGKTKAVALLKILV 295
+ + V + G+ +GK A L L+
Sbjct: 736 IILPLTRVLREGTLEGKRNAARALAQLL 763
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Length = 2102 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 2e-05
Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 2/109 (1%)
Query: 3 VKRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSH 62
++ + +LV+ L S E + EA L LS + + + EAG +P L ++L S
Sbjct: 4 IQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDE 63
Query: 63 AFQENAAATLLNLSITSRDSLMSTR--GLLDAISHVLRHHSTSTSSAAV 109
+ A L NL+ D+ + G + + ++L + A
Sbjct: 64 EVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNAT 112
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An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 1e-04
Identities = 24/69 (34%), Positives = 37/69 (53%)
Query: 8 VRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQEN 67
+ +LV L S E+ AL LR L+ + + ++ EAG +P L +L SS+ Q+N
Sbjct: 51 LPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKN 110
Query: 68 AAATLLNLS 76
A L NL+
Sbjct: 111 ATGALSNLA 119
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An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.002
Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 6/113 (5%)
Query: 43 MISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTR--GLLDAISHVLRHH 100
+ +AG +P L +L SS Q AA L NLS + D++ + G L A+ +L+
Sbjct: 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61
Query: 101 STSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSV 153
AA L +L +I + + L+ ++ + N ++
Sbjct: 62 DEEVVKAA----LWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKN 110
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An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 315 | |||
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.97 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.97 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 99.97 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 99.97 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 99.96 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 99.96 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 99.95 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 99.95 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 99.89 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 99.86 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 99.84 | |
| KOG4199 | 461 | consensus Uncharacterized conserved protein [Funct | 99.81 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 99.75 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 99.73 | |
| KOG2122 | 2195 | consensus Beta-catenin-binding protein APC, contai | 99.71 | |
| KOG4199 | 461 | consensus Uncharacterized conserved protein [Funct | 99.71 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 99.68 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 99.56 | |
| KOG2122 | 2195 | consensus Beta-catenin-binding protein APC, contai | 99.48 | |
| KOG1222 | 791 | consensus Kinesin associated protein KAP [Intracel | 99.46 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 99.4 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 99.38 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 99.36 | |
| KOG4500 | 604 | consensus Rho/Rac GTPase guanine nucleotide exchan | 99.34 | |
| KOG4500 | 604 | consensus Rho/Rac GTPase guanine nucleotide exchan | 99.3 | |
| PRK09687 | 280 | putative lyase; Provisional | 99.28 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 99.26 | |
| PRK09687 | 280 | putative lyase; Provisional | 99.21 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 99.21 | |
| KOG1222 | 791 | consensus Kinesin associated protein KAP [Intracel | 99.2 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 99.19 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 99.04 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 98.98 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 98.97 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 98.95 | |
| KOG2973 | 353 | consensus Uncharacterized conserved protein [Funct | 98.91 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 98.85 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 98.85 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 98.82 | |
| KOG2759 | 442 | consensus Vacuolar H+-ATPase V1 sector, subunit H | 98.81 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 98.8 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 98.78 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 98.71 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 98.7 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 98.64 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 98.59 | |
| KOG3678 | 832 | consensus SARM protein (with sterile alpha and arm | 98.53 | |
| KOG4646 | 173 | consensus Uncharacterized conserved protein, conta | 98.44 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 98.43 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 98.41 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 98.39 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 98.38 | |
| KOG4646 | 173 | consensus Uncharacterized conserved protein, conta | 98.35 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 98.28 | |
| KOG2973 | 353 | consensus Uncharacterized conserved protein [Funct | 98.27 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 98.26 | |
| KOG2759 | 442 | consensus Vacuolar H+-ATPase V1 sector, subunit H | 98.23 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 98.23 | |
| KOG1789 | 2235 | consensus Endocytosis protein RME-8, contains DnaJ | 98.22 | |
| KOG2734 | 536 | consensus Uncharacterized conserved protein [Funct | 98.12 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 98.11 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 98.1 | |
| PF10165 | 446 | Ric8: Guanine nucleotide exchange factor synembryn | 98.09 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 98.08 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 98.04 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 98.02 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 98.01 | |
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 97.97 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 97.9 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 97.85 | |
| KOG3678 | 832 | consensus SARM protein (with sterile alpha and arm | 97.84 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 97.81 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 97.8 | |
| COG5369 | 743 | Uncharacterized conserved protein [Function unknow | 97.76 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 97.71 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 97.7 | |
| KOG2734 | 536 | consensus Uncharacterized conserved protein [Funct | 97.65 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 97.61 | |
| PF10165 | 446 | Ric8: Guanine nucleotide exchange factor synembryn | 97.58 | |
| PF11841 | 160 | DUF3361: Domain of unknown function (DUF3361) | 97.55 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 97.5 | |
| COG5231 | 432 | VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene | 97.49 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 97.48 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 97.33 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 97.32 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 97.31 | |
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 97.28 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 97.21 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 97.2 | |
| KOG1789 | 2235 | consensus Endocytosis protein RME-8, contains DnaJ | 97.15 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 97.09 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 97.01 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 96.95 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 96.95 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 96.95 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 96.92 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 96.91 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 96.86 | |
| KOG2611 | 698 | consensus Neurochondrin/leucine-rich protein (Neur | 96.85 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 96.82 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 96.81 | |
| PF11841 | 160 | DUF3361: Domain of unknown function (DUF3361) | 96.79 | |
| COG5369 | 743 | Uncharacterized conserved protein [Function unknow | 96.77 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 96.77 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 96.74 | |
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 96.68 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 96.64 | |
| KOG3036 | 293 | consensus Protein involved in cell differentiation | 96.61 | |
| PF08045 | 257 | CDC14: Cell division control protein 14, SIN compo | 96.61 | |
| PF08569 | 335 | Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro | 96.58 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 96.56 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 96.56 | |
| PF14668 | 73 | RICTOR_V: Rapamycin-insensitive companion of mTOR, | 96.53 | |
| PF04063 | 192 | DUF383: Domain of unknown function (DUF383); Inter | 96.51 | |
| PF13764 | 802 | E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | 96.5 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 96.45 | |
| KOG3036 | 293 | consensus Protein involved in cell differentiation | 96.44 | |
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 96.43 | |
| PF04063 | 192 | DUF383: Domain of unknown function (DUF383); Inter | 96.39 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 96.31 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 96.26 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 96.12 | |
| PF04078 | 262 | Rcd1: Cell differentiation family, Rcd1-like ; Int | 96.1 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 96.05 | |
| KOG4151 | 748 | consensus Myosin assembly protein/sexual cycle pro | 95.93 | |
| KOG4151 | 748 | consensus Myosin assembly protein/sexual cycle pro | 95.84 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 95.8 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 95.71 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 95.58 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 95.57 | |
| PF04078 | 262 | Rcd1: Cell differentiation family, Rcd1-like ; Int | 95.56 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 95.5 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 95.36 | |
| KOG2999 | 713 | consensus Regulator of Rac1, required for phagocyt | 95.32 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 95.29 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 95.28 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 95.26 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 95.25 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 95.22 | |
| PF08569 | 335 | Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro | 94.9 | |
| PF08324 | 268 | PUL: PUL domain; InterPro: IPR013535 The PUL (afte | 94.8 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 94.72 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 94.71 | |
| COG5231 | 432 | VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene | 94.69 | |
| PF08045 | 257 | CDC14: Cell division control protein 14, SIN compo | 94.68 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 94.65 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 94.64 | |
| KOG2999 | 713 | consensus Regulator of Rac1, required for phagocyt | 94.53 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 94.38 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 94.16 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 94.07 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 93.97 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 93.81 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 93.64 | |
| KOG2274 | 1005 | consensus Predicted importin 9 [Intracellular traf | 93.45 | |
| PF13764 | 802 | E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | 93.39 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 93.23 | |
| KOG2611 | 698 | consensus Neurochondrin/leucine-rich protein (Neur | 93.16 | |
| COG5209 | 315 | RCD1 Uncharacterized protein involved in cell diff | 93.1 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 93.05 | |
| KOG1788 | 2799 | consensus Uncharacterized conserved protein [Funct | 92.99 | |
| COG5209 | 315 | RCD1 Uncharacterized protein involved in cell diff | 92.93 | |
| PF12031 | 257 | DUF3518: Domain of unknown function (DUF3518); Int | 92.88 | |
| PF06025 | 379 | DUF913: Domain of Unknown Function (DUF913); Inter | 92.76 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 92.75 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 92.71 | |
| PF06371 | 187 | Drf_GBD: Diaphanous GTPase-binding Domain; InterPr | 92.63 | |
| PF11701 | 157 | UNC45-central: Myosin-binding striated muscle asse | 92.33 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 92.33 | |
| PF06371 | 187 | Drf_GBD: Diaphanous GTPase-binding Domain; InterPr | 92.24 | |
| PF11865 | 160 | DUF3385: Domain of unknown function (DUF3385); Int | 92.18 | |
| PF11701 | 157 | UNC45-central: Myosin-binding striated muscle asse | 91.49 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 91.44 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 91.05 | |
| PF06025 | 379 | DUF913: Domain of Unknown Function (DUF913); Inter | 90.7 | |
| KOG1967 | 1030 | consensus DNA repair/transcription protein Mms19 [ | 90.64 | |
| KOG2274 | 1005 | consensus Predicted importin 9 [Intracellular traf | 90.57 | |
| PF11707 | 330 | Npa1: Ribosome 60S biogenesis N-terminal; InterPro | 90.43 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 90.26 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 90.0 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 89.99 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 89.94 | |
| PF12031 | 257 | DUF3518: Domain of unknown function (DUF3518); Int | 89.92 | |
| PF10363 | 92 | DUF2435: Protein of unknown function (DUF2435) | 89.86 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 89.72 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 89.22 | |
| cd03569 | 142 | VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s | 89.08 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 88.99 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 88.55 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 88.38 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 87.97 | |
| PF08324 | 268 | PUL: PUL domain; InterPro: IPR013535 The PUL (afte | 87.79 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 87.72 | |
| PF14668 | 73 | RICTOR_V: Rapamycin-insensitive companion of mTOR, | 87.67 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 87.39 | |
| cd03561 | 133 | VHS VHS domain family; The VHS domain is present i | 86.84 | |
| PF12530 | 234 | DUF3730: Protein of unknown function (DUF3730) ; I | 86.34 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 85.94 | |
| cd03568 | 144 | VHS_STAM VHS domain family, STAM subfamily; member | 85.74 | |
| PF08167 | 165 | RIX1: rRNA processing/ribosome biogenesis | 85.49 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 85.32 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 85.26 | |
| PF11707 | 330 | Npa1: Ribosome 60S biogenesis N-terminal; InterPro | 85.17 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 85.05 | |
| cd03567 | 139 | VHS_GGA VHS domain family, GGA subfamily; GGA (Gol | 84.8 | |
| smart00288 | 133 | VHS Domain present in VPS-27, Hrs and STAM. Unpubl | 84.71 | |
| cd03572 | 122 | ENTH_epsin_related ENTH domain, Epsin Related fami | 84.54 | |
| KOG2032 | 533 | consensus Uncharacterized conserved protein [Funct | 84.52 | |
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 84.26 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 84.15 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 84.13 | |
| cd03568 | 144 | VHS_STAM VHS domain family, STAM subfamily; member | 83.59 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 83.32 | |
| PF10363 | 92 | DUF2435: Protein of unknown function (DUF2435) | 83.1 | |
| KOG1967 | 1030 | consensus DNA repair/transcription protein Mms19 [ | 83.0 | |
| KOG1991 | 1010 | consensus Nuclear transport receptor RANBP7/RANBP8 | 82.65 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 81.66 | |
| cd03567 | 139 | VHS_GGA VHS domain family, GGA subfamily; GGA (Gol | 80.96 | |
| cd03569 | 142 | VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s | 80.92 | |
| cd03561 | 133 | VHS VHS domain family; The VHS domain is present i | 80.82 | |
| PF08167 | 165 | RIX1: rRNA processing/ribosome biogenesis | 80.49 |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=262.12 Aligned_cols=287 Identities=20% Similarity=0.203 Sum_probs=245.2
Q ss_pred hhhhhhHHHHHHHhCCC--CHHHHHHHHHHHHHHhccCchhhHHHHh-CCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcc
Q 021242 2 EVKRRTVRSLVTKLGSV--SEQTRAEALAELRLLSKHDAEIRPMISE-AGSIPYLAEILYSSSHAFQENAAATLLNLSIT 78 (315)
Q Consensus 2 ~~~~~~i~~Lv~~L~~~--~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~ 78 (315)
|.+...+..+|+.|+++ +++.|..|+..|+.+++.++++|..+.+ .|+||.|+.+|+++++.+++.|+.+|.+++.+
T Consensus 9 ~~~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~ 88 (2102)
T PLN03200 9 DGTLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKE 88 (2102)
T ss_pred cchHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 45688999999999977 8899999999999999999999999997 99999999999999999999999999999998
Q ss_pred cc-hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcC---CCchhhhhhccccHHHHHHHhhccCC-ChHHH
Q 021242 79 SR-DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVV---DSYRPIIGAKRDIIHSLIEIIKTRNS-PLRSV 153 (315)
Q Consensus 79 ~~-~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~---~~~~~~i~~~~g~i~~Lv~ll~~~~~-~~~~~ 153 (315)
++ +..+...|++++|+.+|++ ++++.++.|+++|++|+.. +.++..++...|+||.|+.++++.+. +..++
T Consensus 89 e~nk~~Iv~~GaIppLV~LL~s----Gs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~ 164 (2102)
T PLN03200 89 EDLRVKVLLGGCIPPLLSLLKS----GSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVE 164 (2102)
T ss_pred HHHHHHHHHcCChHHHHHHHHC----CCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHH
Confidence 76 4445589999999999997 6899999999999999975 44454444335669999999994211 22355
Q ss_pred HHHHHHHHHhccCCCcHH-HHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcC
Q 021242 154 KDALKALFGIALYPLNRY-QVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLG 231 (315)
Q Consensus 154 ~~a~~aL~~Ls~~~~~~~-~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~ 231 (315)
..++.+|.|||.+++++. .+++.|++|.++.+|. ++++..++.|+.+|.+++. +++++..+++.|+||.|+++|+.+
T Consensus 165 ~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLs-S~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg 243 (2102)
T PLN03200 165 GLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLS-SGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQG 243 (2102)
T ss_pred HHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccC
Confidence 678899999999999885 5689999999999996 5678889999999988876 478999999999999999999865
Q ss_pred CCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCH---------HHHHHHHHHHHHHhhCC
Q 021242 232 TGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSA---------KGKTKAVALLKILVDDG 298 (315)
Q Consensus 232 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~---------~~k~~A~~~L~~l~~~~ 298 (315)
.+..+|++|+++|.+||..+ ++.+..+++ .|++|.|+.++.+.+. ..+++|.|.|.++.++.
T Consensus 244 --~~~~VRE~AA~AL~nLAs~s-~e~r~~Iv~--aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~ 314 (2102)
T PLN03200 244 --NEVSVRAEAAGALEALSSQS-KEAKQAIAD--AGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM 314 (2102)
T ss_pred --CChHHHHHHHHHHHHHhcCC-HHHHHHHHH--CCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc
Confidence 35689999999999999754 578888888 9999999999986553 45999999999988753
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-29 Score=261.43 Aligned_cols=282 Identities=23% Similarity=0.260 Sum_probs=243.2
Q ss_pred hhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc--h
Q 021242 4 KRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR--D 81 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~--~ 81 (315)
.++.+|.|+++|++++++.|..|+++|+++++.+++++..+++.|+||+|+++|++++.++++.|+|+|.|++.+++ +
T Consensus 444 ~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir 523 (2102)
T PLN03200 444 GREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIR 523 (2102)
T ss_pred HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHH
Confidence 45689999999999999999999999999999888899999999999999999999999999999999999999764 3
Q ss_pred hhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCch-----------------------------------
Q 021242 82 SLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYR----------------------------------- 126 (315)
Q Consensus 82 ~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~----------------------------------- 126 (315)
.++.+.|++++|+++|++ ++++.+..++++|.+|+...+..
T Consensus 524 ~iV~~aGAIppLV~LL~s----gd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d 599 (2102)
T PLN03200 524 ACVESAGAVPALLWLLKN----GGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLED 599 (2102)
T ss_pred HHHHHCCCHHHHHHHHhC----CCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhH
Confidence 456688999999999997 67899999999999997422211
Q ss_pred --hhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhcc-CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHH
Q 021242 127 --PIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL-YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIA 203 (315)
Q Consensus 127 --~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~ 203 (315)
.......|.++.|+.+++ ++++.+++.|+++|.+++. +++.+..++..|++|+++.+|. ..+..++..++++|.
T Consensus 600 ~~~~g~~~~ggL~~Lv~LL~--sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLs-s~~~~v~keAA~AL~ 676 (2102)
T PLN03200 600 LVREGSAANDALRTLIQLLS--SSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLT-NNTEAVATQSARALA 676 (2102)
T ss_pred HHHHhhhccccHHHHHHHHc--CCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHh-cCChHHHHHHHHHHH
Confidence 000111345999999999 6789999999999999998 4567888999999999999996 567788999999999
Q ss_pred HHhc--ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCH
Q 021242 204 QIAG--CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSA 281 (315)
Q Consensus 204 ~L~~--~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~ 281 (315)
+|+. .+.++..+++.|+|+.|+++++.. +..+++.++.+|.+++..+ +.+.++.. .|+++.|+.+++++++
T Consensus 677 nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~---d~~v~e~Al~ALanLl~~~--e~~~ei~~--~~~I~~Lv~lLr~G~~ 749 (2102)
T PLN03200 677 ALSRSIKENRKVSYAAEDAIKPLIKLAKSS---SIEVAEQAVCALANLLSDP--EVAAEALA--EDIILPLTRVLREGTL 749 (2102)
T ss_pred HHHhCCCHHHHHHHHHcCCHHHHHHHHhCC---ChHHHHHHHHHHHHHHcCc--hHHHHHHh--cCcHHHHHHHHHhCCh
Confidence 9985 455677788999999999999975 8899999999999999754 46678887 8999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCC
Q 021242 282 KGKTKAVALLKILVDDGN 299 (315)
Q Consensus 282 ~~k~~A~~~L~~l~~~~~ 299 (315)
+.|++|+++|..|.....
T Consensus 750 ~~k~~Aa~AL~~L~~~~~ 767 (2102)
T PLN03200 750 EGKRNAARALAQLLKHFP 767 (2102)
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 999999999887765443
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=232.25 Aligned_cols=283 Identities=20% Similarity=0.224 Sum_probs=245.9
Q ss_pred hhHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc--hh
Q 021242 6 RTVRSLVTKLGSV-SEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR--DS 82 (315)
Q Consensus 6 ~~i~~Lv~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~--~~ 82 (315)
+.||.+|+.|+.. +|.+|..|+|+|.+++..+.+.-+.++++|++|.++.++.+++..+++.|+|+|.|++.+.. +.
T Consensus 109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd 188 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRD 188 (514)
T ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHH
Confidence 7899999999855 58999999999999999988889999999999999999999999999999999999999875 67
Q ss_pred hhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHH
Q 021242 83 LMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFG 162 (315)
Q Consensus 83 ~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~ 162 (315)
++.+.|++++|+.++..+ .......+++|+|.||+........+..-..++|.|..++. ..|+++...|+|+|.+
T Consensus 189 ~vl~~g~l~pLl~~l~~~---~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~--~~D~~Vl~Da~WAlsy 263 (514)
T KOG0166|consen 189 YVLSCGALDPLLRLLNKS---DKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLH--STDEEVLTDACWALSY 263 (514)
T ss_pred HHHhhcchHHHHHHhccc---cchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHH
Confidence 788999999999999862 23456779999999999866544444443466999999999 5699999999999999
Q ss_pred hccCC-CcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHH
Q 021242 163 IALYP-LNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKE 240 (315)
Q Consensus 163 Ls~~~-~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~ 240 (315)
|+..+ +.-..+++.|++|.|+++|. +++..++..|++++.|+.. ++...+.+++.|+++.|..++... ....+++
T Consensus 264 Lsdg~ne~iq~vi~~gvv~~LV~lL~-~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s--~~~~ikk 340 (514)
T KOG0166|consen 264 LTDGSNEKIQMVIDAGVVPRLVDLLG-HSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSS--PKESIKK 340 (514)
T ss_pred HhcCChHHHHHHHHccchHHHHHHHc-CCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccC--cchhHHH
Confidence 99855 45566778999999999996 5677788899999999965 677888899999999999999843 2556899
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhCCC
Q 021242 241 NAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDDGN 299 (315)
Q Consensus 241 ~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~~~ 299 (315)
.|||++.||+. +..+..+.++. +|.+|.|+.++++++.++|+.|+|++.++..+++
T Consensus 341 EAcW~iSNItA-G~~~qiqaVid--a~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~ 396 (514)
T KOG0166|consen 341 EACWTISNITA-GNQEQIQAVID--ANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGT 396 (514)
T ss_pred HHHHHHHHhhc-CCHHHHHHHHH--cccHHHHHHHHhccchHHHHHHHHHHHhhcccCC
Confidence 99999999997 55567789998 9999999999999999999999999999977665
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-29 Score=229.04 Aligned_cols=279 Identities=20% Similarity=0.230 Sum_probs=241.4
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCH-HHHHHHHHHHHhcCcccc--h
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSH-AFQENAAATLLNLSITSR--D 81 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~~L~~la~~~~--~ 81 (315)
-+.+|.++++|.+++.+++..|+|+|.+++++++..|..+.+.|++++|+.++...++ ...+.++|+|.|+|.+.+ +
T Consensus 151 agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P 230 (514)
T KOG0166|consen 151 AGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSP 230 (514)
T ss_pred CCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCC
Confidence 4678999999999999999999999999999999999999999999999999987776 688999999999999974 3
Q ss_pred hhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc-CCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHH
Q 021242 82 SLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV-VDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKAL 160 (315)
Q Consensus 82 ~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL 160 (315)
..-.-...+|.|..++++ .++++...|+|+|++|+- .++.-..+.+. |++|.|+++|. +.++.++..|++++
T Consensus 231 ~~~~v~~iLp~L~~ll~~----~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~-gvv~~LV~lL~--~~~~~v~~PaLRai 303 (514)
T KOG0166|consen 231 PFDVVAPILPALLRLLHS----TDEEVLTDACWALSYLTDGSNEKIQMVIDA-GVVPRLVDLLG--HSSPKVVTPALRAI 303 (514)
T ss_pred cHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHhcCChHHHHHHHHc-cchHHHHHHHc--CCCcccccHHHhhc
Confidence 443455689999999998 789999999999999994 44544555554 77999999999 45778889999999
Q ss_pred HHhccCCCc-HHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChhH
Q 021242 161 FGIALYPLN-RYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHRV 238 (315)
Q Consensus 161 ~~Ls~~~~~-~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~ 238 (315)
.|+....+. ...++..|++|.|..++..++...++..|+|+++|++. ..+..++++++|.+|.|+.+|+.+ +-++
T Consensus 304 GNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~---ef~~ 380 (514)
T KOG0166|consen 304 GNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTA---EFDI 380 (514)
T ss_pred cceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhcc---chHH
Confidence 999996655 46678999999999999755556688999999999965 688999999999999999999987 7889
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 021242 239 KENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILV 295 (315)
Q Consensus 239 ~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~ 295 (315)
|..|+|++.|++..+.++....+++ .|++++|++++.-.+.++...+-..|.++-
T Consensus 381 rKEAawaIsN~ts~g~~~qi~yLv~--~giI~plcdlL~~~D~~ii~v~Ld~l~nil 435 (514)
T KOG0166|consen 381 RKEAAWAISNLTSSGTPEQIKYLVE--QGIIKPLCDLLTCPDVKIILVALDGLENIL 435 (514)
T ss_pred HHHHHHHHHhhcccCCHHHHHHHHH--cCCchhhhhcccCCChHHHHHHHHHHHHHH
Confidence 9999999999998887778899998 999999999996668888777777666653
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-28 Score=210.17 Aligned_cols=277 Identities=19% Similarity=0.244 Sum_probs=242.7
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc-hhhh
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR-DSLM 84 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~-~~~i 84 (315)
+++.++.++=++.+..+|..+.++|.++.. +.++|+.++.+|++|.||.++++.|+++|.++..++.|++.+.. +++.
T Consensus 167 GaL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~L 245 (550)
T KOG4224|consen 167 GALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKIL 245 (550)
T ss_pred cchhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHH
Confidence 456778886677888999999999999984 58999999999999999999999999999999999999999875 5555
Q ss_pred hhcC--chHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHH
Q 021242 85 STRG--LLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFG 162 (315)
Q Consensus 85 ~~~~--~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~ 162 (315)
.+.+ .++.|++++++ +++.++..|.-+|++|+...++...+.+.|+ +|.++.+++++ ..........++.|
T Consensus 246 aqaep~lv~~Lv~Lmd~----~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~-lP~lv~Llqs~--~~plilasVaCIrn 318 (550)
T KOG4224|consen 246 AQAEPKLVPALVDLMDD----GSDKVKCQAGLALRNLASDTEYQREIVEAGS-LPLLVELLQSP--MGPLILASVACIRN 318 (550)
T ss_pred HhcccchHHHHHHHHhC----CChHHHHHHHHHHhhhcccchhhhHHHhcCC-chHHHHHHhCc--chhHHHHHHHHHhh
Confidence 5655 99999999997 7889999999999999998888888888766 99999999953 44455666778899
Q ss_pred hccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHH
Q 021242 163 IALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKEN 241 (315)
Q Consensus 163 Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~ 241 (315)
++.+|-|-..++++|.+.+|+++|.-..+.+++-.|..+|+||+. .+.++..|.+.|+||.+..++.++ .-.+|+.
T Consensus 319 isihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~---pvsvqse 395 (550)
T KOG4224|consen 319 ISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDG---PVSVQSE 395 (550)
T ss_pred cccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC---ChhHHHH
Confidence 999999999999999999999999633455688889999999987 688999999999999999999987 7788988
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhC
Q 021242 242 AVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDD 297 (315)
Q Consensus 242 a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~ 297 (315)
...++..|+.... .+..+.. .|.++.|+.+..+.+.+++.+|+..|-+|+.+
T Consensus 396 isac~a~Lal~d~--~k~~lld--~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 396 ISACIAQLALNDN--DKEALLD--SGIIPILIPWTGSESEEVRGNAAAALINLSSD 447 (550)
T ss_pred HHHHHHHHHhccc--cHHHHhh--cCCcceeecccCccchhhcccHHHHHHhhhhh
Confidence 8888999986543 4467777 99999999999999999999999999999865
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.1e-28 Score=208.66 Aligned_cols=277 Identities=17% Similarity=0.204 Sum_probs=243.8
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc-hhhh
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR-DSLM 84 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~-~~~i 84 (315)
..+..|+..+.....++|+.++++|.+++.. +++|..+...|++.++.++-++.+..+|.++..+|.|++...+ ++..
T Consensus 126 ~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~L 204 (550)
T KOG4224|consen 126 LGLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVL 204 (550)
T ss_pred cChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhh
Confidence 3455566666666669999999999999988 6899999999999999998899999999999999999998765 5566
Q ss_pred hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhcc-ccHHHHHHHhhccCCChHHHHHHHHHHHHh
Q 021242 85 STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKR-DIIHSLIEIIKTRNSPLRSVKDALKALFGI 163 (315)
Q Consensus 85 ~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~-g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~L 163 (315)
+.+|++|.|++++++ ++++++..++.+|.+++.+.-+|..+.+.+ -++|.||++.. +++++++-.|..+|.||
T Consensus 205 V~aG~lpvLVsll~s----~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd--~~s~kvkcqA~lALrnl 278 (550)
T KOG4224|consen 205 VHAGGLPVLVSLLKS----GDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMD--DGSDKVKCQAGLALRNL 278 (550)
T ss_pred hccCCchhhhhhhcc----CChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHh--CCChHHHHHHHHHHhhh
Confidence 799999999999998 789999999999999999888888888753 38999999999 67999999999999999
Q ss_pred ccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHH
Q 021242 164 ALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAV 243 (315)
Q Consensus 164 s~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~ 243 (315)
+++.+-...++++|++|.++++|+ ++.-+........++|++.+|-+-.-|.+.|++..||++|+.+ +++++|-+|+
T Consensus 279 asdt~Yq~eiv~ag~lP~lv~Llq-s~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~--dnEeiqchAv 355 (550)
T KOG4224|consen 279 ASDTEYQREIVEAGSLPLLVELLQ-SPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAG--DNEEIQCHAV 355 (550)
T ss_pred cccchhhhHHHhcCCchHHHHHHh-CcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcC--CchhhhhhHH
Confidence 999999999999999999999996 5666777777888999999998888899999999999999987 4778999999
Q ss_pred HHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 021242 244 SALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILV 295 (315)
Q Consensus 244 ~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~ 295 (315)
.+||+|+.++ +..+..+.+ .|++|+|..++.+++-.++..-...+..|+
T Consensus 356 stLrnLAass-e~n~~~i~e--sgAi~kl~eL~lD~pvsvqseisac~a~La 404 (550)
T KOG4224|consen 356 STLRNLAASS-EHNVSVIRE--SGAIPKLIELLLDGPVSVQSEISACIAQLA 404 (550)
T ss_pred HHHHHHhhhh-hhhhHHHhh--cCchHHHHHHHhcCChhHHHHHHHHHHHHH
Confidence 9999998744 456677776 999999999999999888888777766664
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-27 Score=204.35 Aligned_cols=277 Identities=17% Similarity=0.159 Sum_probs=233.2
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCH--HHHHHHHHHHHhcCcccc--
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSH--AFQENAAATLLNLSITSR-- 80 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~--~~~~~a~~~L~~la~~~~-- 80 (315)
-+++|.++++|.+++.+++.+++|+|.+++++++..|..+.+.|++++++.++.++.+ +..+++.|.|.||+.+..
T Consensus 156 ~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~ 235 (526)
T COG5064 156 AGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPP 235 (526)
T ss_pred CCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCC
Confidence 4689999999999999999999999999999999999999999999999999987654 788999999999999863
Q ss_pred hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCC-CchhhhhhccccHHHHHHHhhccCCChHHHHHHHHH
Q 021242 81 DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVD-SYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKA 159 (315)
Q Consensus 81 ~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~a 159 (315)
+.+-.-...+|.|.+++.+ .++++...|+|+|.+|+-.+ +.-..+.+ .|..+.|+.+|. +.+..++..|++.
T Consensus 236 P~w~~isqalpiL~KLiys----~D~evlvDA~WAiSYlsDg~~E~i~avld-~g~~~RLvElLs--~~sa~iqtPalR~ 308 (526)
T COG5064 236 PDWSNISQALPILAKLIYS----RDPEVLVDACWAISYLSDGPNEKIQAVLD-VGIPGRLVELLS--HESAKIQTPALRS 308 (526)
T ss_pred CchHHHHHHHHHHHHHHhh----cCHHHHHHHHHHHHHhccCcHHHHHHHHh-cCCcHHHHHHhc--CccccccCHHHHh
Confidence 3332234479999999997 68899999999999999654 33444445 477889999999 5688899999999
Q ss_pred HHHhccCCC-cHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChh
Q 021242 160 LFGIALYPL-NRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHR 237 (315)
Q Consensus 160 L~~Ls~~~~-~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~ 237 (315)
+.|+....+ ....++++|+++.+..+|. ++...++..+||+++|++. +.+..++++++.-+|.|+++|... +-.
T Consensus 309 vGNIVTG~D~QTqviI~~G~L~a~~~lLs-~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~a---e~k 384 (526)
T COG5064 309 VGNIVTGSDDQTQVIINCGALKAFRSLLS-SPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSA---EYK 384 (526)
T ss_pred hcCeeecCccceehheecccHHHHHHHhc-ChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHH---HHH
Confidence 999999554 4566789999999999995 5667899999999999954 788899999999999999999975 778
Q ss_pred HHHHHHHHHHHHhccCC--HHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 021242 238 VKENAVSALLNLVNFGG--ERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKIL 294 (315)
Q Consensus 238 ~~~~a~~~L~~l~~~~~--~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l 294 (315)
+|..|||++.|....+. ++..+.++. .|++.+|++++.-.+-++-+.+...+.++
T Consensus 385 ~kKEACWAisNatsgg~~~PD~iryLv~--qG~IkpLc~~L~~~dNkiiev~LD~~eni 441 (526)
T COG5064 385 IKKEACWAISNATSGGLNRPDIIRYLVS--QGFIKPLCDLLDVVDNKIIEVALDAIENI 441 (526)
T ss_pred HHHHHHHHHHhhhccccCCchHHHHHHH--ccchhHHHHHHhccCccchhhhHHHHHHH
Confidence 89999999999886543 356688887 99999999999987666666666555444
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-27 Score=203.90 Aligned_cols=278 Identities=17% Similarity=0.187 Sum_probs=235.8
Q ss_pred hhHHHHHHHhCC-CCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc--hh
Q 021242 6 RTVRSLVTKLGS-VSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR--DS 82 (315)
Q Consensus 6 ~~i~~Lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~--~~ 82 (315)
+-+|++|++|.+ ...-.+.+|+|+|-+++..+....+.+++.|++|.++.||.+.+.++++.++|+|.|++.+.. +.
T Consensus 114 GvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD 193 (526)
T COG5064 114 GVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRD 193 (526)
T ss_pred cccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHH
Confidence 568999999954 455789999999999998877777788899999999999999999999999999999999875 67
Q ss_pred hhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCC--Cc-hhhhhhccccHHHHHHHhhccCCChHHHHHHHHH
Q 021242 83 LMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVD--SY-RPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKA 159 (315)
Q Consensus 83 ~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~--~~-~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~a 159 (315)
++.+.|++++++.++.+. ..+.....++.|+|.||+... .- -..+.. . +|.|.+++- ..|+++...|+|+
T Consensus 194 ~vL~~galeplL~ll~ss--~~~ismlRn~TWtLSNlcRGknP~P~w~~isq--a-lpiL~KLiy--s~D~evlvDA~WA 266 (526)
T COG5064 194 YVLQCGALEPLLGLLLSS--AIHISMLRNATWTLSNLCRGKNPPPDWSNISQ--A-LPILAKLIY--SRDPEVLVDACWA 266 (526)
T ss_pred HHHhcCchHHHHHHHHhc--cchHHHHHHhHHHHHHhhCCCCCCCchHHHHH--H-HHHHHHHHh--hcCHHHHHHHHHH
Confidence 888999999999999852 134567789999999999633 32 333432 4 899999998 5689999999999
Q ss_pred HHHhccCCCcH-HHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChh
Q 021242 160 LFGIALYPLNR-YQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHR 237 (315)
Q Consensus 160 L~~Ls~~~~~~-~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~ 237 (315)
+..|+..+..+ ..+++.|..+.|+++|. +++..++..++..+.|+-. ++..-+.+++.|+++.+-.+|.+. ...
T Consensus 267 iSYlsDg~~E~i~avld~g~~~RLvElLs-~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~---ke~ 342 (526)
T COG5064 267 ISYLSDGPNEKIQAVLDVGIPGRLVELLS-HESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSP---KEN 342 (526)
T ss_pred HHHhccCcHHHHHHHHhcCCcHHHHHHhc-CccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcCh---hhh
Confidence 99999977555 56778999999999995 6778888999999999954 667778889999999999999875 568
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhC
Q 021242 238 VKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDD 297 (315)
Q Consensus 238 ~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~ 297 (315)
++..+||++.|++. +..+..+.+++ +..+|+|+.++++.+..+|+.|+|...+....
T Consensus 343 irKEaCWTiSNITA-Gnteqiqavid--~nliPpLi~lls~ae~k~kKEACWAisNatsg 399 (526)
T COG5064 343 IRKEACWTISNITA-GNTEQIQAVID--ANLIPPLIHLLSSAEYKIKKEACWAISNATSG 399 (526)
T ss_pred hhhhhheeeccccc-CCHHHHHHHHh--cccchHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999986 44567788988 99999999999999999999999987777543
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=99.89 E-value=6e-21 Score=184.65 Aligned_cols=282 Identities=20% Similarity=0.234 Sum_probs=224.9
Q ss_pred hhhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc-h
Q 021242 3 VKRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR-D 81 (315)
Q Consensus 3 ~~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~-~ 81 (315)
++++.|+.|+..|.+++.+....++..|.+++-. .+|+..|.+.|+||+|++++.+.+.+++..++++|+|||++++ +
T Consensus 287 ~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R 365 (708)
T PF05804_consen 287 VNKGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELR 365 (708)
T ss_pred HhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHH
Confidence 4788999999999999999999999999999976 6799999999999999999999999999999999999999987 5
Q ss_pred hhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHH
Q 021242 82 SLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALF 161 (315)
Q Consensus 82 ~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~ 161 (315)
..+++.|++|.|+.+|.+ + ..+..+..+|.+||..+++|..+..+ +++|.+++++-. ..++.+...++..+.
T Consensus 366 ~~mV~~GlIPkLv~LL~d----~--~~~~val~iLy~LS~dd~~r~~f~~T-dcIp~L~~~Ll~-~~~~~v~~eliaL~i 437 (708)
T PF05804_consen 366 SQMVSLGLIPKLVELLKD----P--NFREVALKILYNLSMDDEARSMFAYT-DCIPQLMQMLLE-NSEEEVQLELIALLI 437 (708)
T ss_pred HHHHHCCCcHHHHHHhCC----C--chHHHHHHHHHHhccCHhhHHHHhhc-chHHHHHHHHHh-CCCccccHHHHHHHH
Confidence 667799999999999986 2 34567899999999999999999886 569999998764 245566677889999
Q ss_pred HhccCCCcHHHHHhhCCcHHHHHHHhc---------------C----------------------CCcchHHHHHHHHHH
Q 021242 162 GIALYPLNRYQVIALGGVQPLFSLVVN---------------G----------------------GRAGIVEDASAVIAQ 204 (315)
Q Consensus 162 ~Ls~~~~~~~~i~~~g~v~~L~~lL~~---------------~----------------------~~~~~~~~a~~~L~~ 204 (315)
|||.++.+...+.+.|+++.|++...+ + .+..+.-.++++|+|
T Consensus 438 NLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaN 517 (708)
T PF05804_consen 438 NLALNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILAN 517 (708)
T ss_pred HHhcCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHh
Confidence 999999888888887777766543211 1 123344457788888
Q ss_pred Hh--------------------------------------------cChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHH
Q 021242 205 IA--------------------------------------------GCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKE 240 (315)
Q Consensus 205 L~--------------------------------------------~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~ 240 (315)
|+ .++.....+.+.|.++.|+.+|+... .+.+.--
T Consensus 518 L~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kq-eDdE~Vl 596 (708)
T PF05804_consen 518 LTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQ-EDDEIVL 596 (708)
T ss_pred cccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhC-chHHHHH
Confidence 65 23333444444455666666666542 3556666
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhC
Q 021242 241 NAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDD 297 (315)
Q Consensus 241 ~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~ 297 (315)
+.+.+++++..+. ..+..+++ +.++...|++++++.++.+|+.|..+|-.+.++
T Consensus 597 Qil~~f~~ll~h~--~tr~~ll~-~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~ 650 (708)
T PF05804_consen 597 QILYVFYQLLFHE--ETREVLLK-ETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEY 650 (708)
T ss_pred HHHHHHHHHHcCh--HHHHHHHh-ccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 7788888988764 45567776 578999999999999999999999999888765
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.7e-19 Score=173.21 Aligned_cols=263 Identities=16% Similarity=0.177 Sum_probs=219.0
Q ss_pred HHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc-hhhhhhcCchH
Q 021242 13 TKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR-DSLMSTRGLLD 91 (315)
Q Consensus 13 ~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~-~~~i~~~~~i~ 91 (315)
.++...+ .....+...|.+++.+ +.+...+.+.|+|+.|+++|.+.+.+++..++.+|.+|+...+ +..|.+.|+++
T Consensus 257 ~l~~kQe-qLlrv~~~lLlNLAed-~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~ 334 (708)
T PF05804_consen 257 TLIRKQE-QLLRVAFYLLLNLAED-PRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVE 334 (708)
T ss_pred HHHHHHH-HHHHHHHHHHHHHhcC-hHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHH
Confidence 3334443 5566888889999965 7899999999999999999999999999999999999999976 44677999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHH
Q 021242 92 AISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRY 171 (315)
Q Consensus 92 ~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~ 171 (315)
.|.+++++ ++.+....+.++|+|||.+++.|..|.+. |++|.|+.+|. ++..+..|+..|++||.+++.|.
T Consensus 335 kL~kLl~s----~~~~l~~~aLrlL~NLSfd~~~R~~mV~~-GlIPkLv~LL~----d~~~~~val~iLy~LS~dd~~r~ 405 (708)
T PF05804_consen 335 KLLKLLPS----ENEDLVNVALRLLFNLSFDPELRSQMVSL-GLIPKLVELLK----DPNFREVALKILYNLSMDDEARS 405 (708)
T ss_pred HHHHHhcC----CCHHHHHHHHHHHHHhCcCHHHHHHHHHC-CCcHHHHHHhC----CCchHHHHHHHHHHhccCHhhHH
Confidence 99999997 67889999999999999999999999985 66999999998 23466789999999999999999
Q ss_pred HHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhc
Q 021242 172 QVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVN 251 (315)
Q Consensus 172 ~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~ 251 (315)
.+...+++|.+++++...++..+...+++++.|||.++.+.+.+++.+|++.|++..... .. .....++.|++.
T Consensus 406 ~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~---~D---~lLlKlIRNiS~ 479 (708)
T PF05804_consen 406 MFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKT---RD---PLLLKLIRNISQ 479 (708)
T ss_pred HHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhc---cc---HHHHHHHHHHHh
Confidence 888889999999998765666666678999999999999999999888999999966542 21 224568999998
Q ss_pred cCCHHHHHHHHHHccCcHHHHHHHHhhC-CHHHHHHHHHHHHHHhhC
Q 021242 252 FGGERAAEEVKEMAMQVADGIADVAQNG-SAKGKTKAVALLKILVDD 297 (315)
Q Consensus 252 ~~~~~~~~~i~~~~~g~~~~L~~ll~~~-~~~~k~~A~~~L~~l~~~ 297 (315)
++. .. +.+. .+.+..|+.++..+ ++...-.+..+|.+|.-+
T Consensus 480 h~~-~~-k~~f---~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~ 521 (708)
T PF05804_consen 480 HDG-PL-KELF---VDFIGDLAKIVSSGDSEEFVVECLGILANLTIP 521 (708)
T ss_pred cCc-hH-HHHH---HHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccC
Confidence 764 23 3333 45888888888874 788999999999998754
|
|
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.9e-20 Score=173.96 Aligned_cols=292 Identities=17% Similarity=0.155 Sum_probs=228.6
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc---hh
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR---DS 82 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~---~~ 82 (315)
..+|..+.||.+.++..|..|...|..++..+.+.|..+.+.|+|+.||.+|.+...++|.+|+++|.||.++.. ++
T Consensus 233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred cccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence 357899999999999999999999999999999999999999999999999999999999999999999998852 56
Q ss_pred h-hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCC------------C
Q 021242 83 L-MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNS------------P 149 (315)
Q Consensus 83 ~-i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~------------~ 149 (315)
+ +.+.++++.++++|+. ..+.++++..+++||||+..+..+..+... . ++.|..-+-.+.. +
T Consensus 313 lai~~~~Gv~~l~~~Lr~---t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-a-l~tLt~~vI~P~Sgw~~~~~~~~~~~ 387 (717)
T KOG1048|consen 313 LAIKELNGVPTLVRLLRH---TQDDEVRELITGILWNLSSNDALKMLIITS-A-LSTLTDNVIIPHSGWEEEPAPRKAED 387 (717)
T ss_pred hhhhhcCChHHHHHHHHh---hcchHHHHHHHHHHhcccchhHHHHHHHHH-H-HHHHHHhhcccccccCCCCccccccc
Confidence 5 6699999999999996 368899999999999999998888888763 5 7888764432211 2
Q ss_pred hHHHHHHHHHHHHhcc-CCCcHHHHHhh-CCcHHHHHHHhc-----CCCcchHHHHHHHHHHHhcChh------------
Q 021242 150 LRSVKDALKALFGIAL-YPLNRYQVIAL-GGVQPLFSLVVN-----GGRAGIVEDASAVIAQIAGCEE------------ 210 (315)
Q Consensus 150 ~~~~~~a~~aL~~Ls~-~~~~~~~i~~~-g~v~~L~~lL~~-----~~~~~~~~~a~~~L~~L~~~~~------------ 210 (315)
..+..+++.+|.|+++ ..+.|+++.+. |.|..|+-.++. +.+....+.|+++|+||+-.-+
T Consensus 388 ~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~ 467 (717)
T KOG1048|consen 388 STVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLA 467 (717)
T ss_pred ceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhh
Confidence 4567899999999999 77888999874 999999888852 2456778999999999873111
Q ss_pred --------------------hHHHH--------------HhcC--------CHHHHHHHhhcCCCCChhHHHHHHHHHHH
Q 021242 211 --------------------SVDEF--------------KKCC--------GIGVLVDLLDLGTGSGHRVKENAVSALLN 248 (315)
Q Consensus 211 --------------------~~~~i--------------~~~~--------~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~ 248 (315)
..+.. ...| .|..-+.+|.. .....+.|.+.++|-|
T Consensus 468 ~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~--s~n~~TlEasaGaLQN 545 (717)
T KOG1048|consen 468 NIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLAL--SKNDNTLEASAGALQN 545 (717)
T ss_pred cccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHH--hcchHHHHHhhhhHhh
Confidence 00110 0001 12222333442 2367889999999999
Q ss_pred HhccCCH---HHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhCCCCCCccc
Q 021242 249 LVNFGGE---RAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDDGNMNITMT 305 (315)
Q Consensus 249 l~~~~~~---~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~~~~~i~~~ 305 (315)
++.+... ..+..++. ++-+++.|+++++.+++.+.+.++.+|++|+.+..-+..++
T Consensus 546 ltA~~~~~~~~~~~~v~~-kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~lig 604 (717)
T KOG1048|consen 546 LTAGLWTWSEYMRGAVFR-KEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIG 604 (717)
T ss_pred hhccCCcchhHHHhhhhh-hccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhh
Confidence 9975432 23455533 38899999999999999999999999999998755444444
|
|
| >KOG4199 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-17 Score=144.28 Aligned_cols=276 Identities=15% Similarity=0.162 Sum_probs=227.8
Q ss_pred HHHHh--CCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCC-CHHHHHHHHHHHHhcCcccc-h-----
Q 021242 11 LVTKL--GSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSS-SHAFQENAAATLLNLSITSR-D----- 81 (315)
Q Consensus 11 Lv~~L--~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~la~~~~-~----- 81 (315)
++.+| +.++.++-...+..++.-+..++.||+.+.+.++.|.+...|... ...+.+.+.+++..+.++++ +
T Consensus 150 vv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ 229 (461)
T KOG4199|consen 150 VLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQ 229 (461)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecch
Confidence 44444 455678888888999988877899999999999999999777553 33577888999999888764 1
Q ss_pred -----hhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChH---HH
Q 021242 82 -----SLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLR---SV 153 (315)
Q Consensus 82 -----~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~---~~ 153 (315)
+.+.+.|++..|+..++-+ .+|++....+.+|..|+..++.+..+.+.|| +..|+.++.++ ++.. ..
T Consensus 230 ah~hAr~ia~e~~l~~L~Eal~A~---~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GG-l~tl~~~i~d~-n~~~~r~l~ 304 (461)
T KOG4199|consen 230 AHGHARTIAKEGILTALTEALQAG---IDPDSLVSLSTTLKALAVRDEICKSIAESGG-LDTLLRCIDDS-NEQGNRTLA 304 (461)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHcc---CCccHHHHHHHHHHHHHHHHHHHHHHHHccC-HHHHHHHHhhh-chhhHHHHH
Confidence 4556888999999999853 5678888999999999999999999999888 89999999864 3333 45
Q ss_pred HHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcC-CCcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcC
Q 021242 154 KDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNG-GRAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLG 231 (315)
Q Consensus 154 ~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~-~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~ 231 (315)
+.++.+|..|+-+++++..|++.|+.+.++.++.++ .++.+.+.++.+++.||- .|+....+++.|+-...++.|+..
T Consensus 305 k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkah 384 (461)
T KOG4199|consen 305 KTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAH 384 (461)
T ss_pred HHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhC
Confidence 789999999999999999999999999999998755 567788999999999986 688888888999888889999865
Q ss_pred CCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhh
Q 021242 232 TGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 232 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
+....+|.++|+++.|+...+. ..+..++ ..|++.|+....+..+.....|...|+-|-=
T Consensus 385 -P~~a~vQrnac~~IRNiv~rs~-~~~~~~l---~~GiE~Li~~A~~~h~tce~~akaALRDLGc 444 (461)
T KOG4199|consen 385 -PVAAQVQRNACNMIRNIVVRSA-ENRTILL---ANGIEKLIRTAKANHETCEAAAKAALRDLGC 444 (461)
T ss_pred -cHHHHHHHHHHHHHHHHHHhhh-hccchHH---hccHHHHHHHHHhcCccHHHHHHHHHHhcCc
Confidence 4567899999999999998654 3334444 6789999999999999999999999987743
|
|
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-16 Score=150.92 Aligned_cols=288 Identities=18% Similarity=0.183 Sum_probs=222.9
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCch--hhHHHHhCCCHHHHHHHHcC-CCHHHHHHHHHHHHhcCcccc-h
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAE--IRPMISEAGSIPYLAEILYS-SSHAFQENAAATLLNLSITSR-D 81 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~--~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~la~~~~-~ 81 (315)
+.|+.||.+|.+.+.++|.+|+++|+||...+.. |+-.|.+.++||.++++|+. .|.++++....+||||+..+. +
T Consensus 275 ggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK 354 (717)
T KOG1048|consen 275 GGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALK 354 (717)
T ss_pred ccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHH
Confidence 6799999999999999999999999999866544 99999999999999999986 788999999999999999976 3
Q ss_pred hhhhhcCchHHHHHHHhcCCC----CC------CHHHHHHHHHHHHHhhc-CCCchhhhhhccccHHHHHHHhhcc----
Q 021242 82 SLMSTRGLLDAISHVLRHHST----ST------SSAAVQSSAATLHSLLV-VDSYRPIIGAKRDIIHSLIEIIKTR---- 146 (315)
Q Consensus 82 ~~i~~~~~i~~L~~lL~~~~~----~~------~~~~~~~a~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~ll~~~---- 146 (315)
..+ -..+++.|..-.-.+.+ ++ ..++..+++++|+|++. ..+.+..++++.|+|..|+..++..
T Consensus 355 ~~i-i~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~ 433 (717)
T KOG1048|consen 355 MLI-ITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKS 433 (717)
T ss_pred HHH-HHHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhc
Confidence 333 33456666554432211 01 13445689999999997 7788999999999999999888721
Q ss_pred CCChHHHHHHHHHHHHhc--------------------------------------------------------------
Q 021242 147 NSPLRSVKDALKALFGIA-------------------------------------------------------------- 164 (315)
Q Consensus 147 ~~~~~~~~~a~~aL~~Ls-------------------------------------------------------------- 164 (315)
.-|.+.+++|...|+||+
T Consensus 434 ~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~ 513 (717)
T KOG1048|consen 434 DLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEW 513 (717)
T ss_pred cccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCcee
Confidence 223455566666666664
Q ss_pred ----------------------------------cC-----CCcHHHH-HhhCCcHHHHHHHhcCCCcchHHHHHHHHHH
Q 021242 165 ----------------------------------LY-----PLNRYQV-IALGGVQPLFSLVVNGGRAGIVEDASAVIAQ 204 (315)
Q Consensus 165 ----------------------------------~~-----~~~~~~i-~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~ 204 (315)
.. ...+..+ .+..++|+++++|+ .++..+...++++|+|
T Consensus 514 Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~-~~~~~vv~s~a~~LrN 592 (717)
T KOG1048|consen 514 LWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLR-NDDSDVVRSAAGALRN 592 (717)
T ss_pred eecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHh-cCCchHHHHHHHHHhh
Confidence 10 0112222 34566788899996 5678888999999999
Q ss_pred HhcChhhHHHHHhcCCHHHHHHHhhcCCC---CChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhh-CC
Q 021242 205 IAGCEESVDEFKKCCGIGVLVDLLDLGTG---SGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQN-GS 280 (315)
Q Consensus 205 L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~-~~ 280 (315)
|+.+..++..|- ..+++.|++.|..+.+ .+.+.--.+|.+|+++...+ -..++.+.+ .+++++|+.+..+ .+
T Consensus 593 ls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~-~~nAkdl~~--~~g~~kL~~I~~s~~S 668 (717)
T KOG1048|consen 593 LSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKN-VLNAKDLLE--IKGIPKLRLISKSQHS 668 (717)
T ss_pred hccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHh-HHHHHHHHh--ccChHHHHHHhcccCC
Confidence 999999999885 5689999999976522 34677778999999998644 457788887 9999999999887 58
Q ss_pred HHHHHHHHHHHHHHhhCCC
Q 021242 281 AKGKTKAVALLKILVDDGN 299 (315)
Q Consensus 281 ~~~k~~A~~~L~~l~~~~~ 299 (315)
+++-+.|..+|..|-.+..
T Consensus 669 ~k~~kaAs~vL~~lW~y~e 687 (717)
T KOG1048|consen 669 PKEFKAASSVLDVLWQYKE 687 (717)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8999999999888765433
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.6e-16 Score=133.30 Aligned_cols=195 Identities=15% Similarity=0.198 Sum_probs=167.0
Q ss_pred hhhHHHHHHHhCC-CCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhh
Q 021242 5 RRTVRSLVTKLGS-VSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSL 83 (315)
Q Consensus 5 ~~~i~~Lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~ 83 (315)
...++.|+.+|+. .+|.+|..++.++.+.+.. +.++..+.+.|+++.+..+|.++++.+++.|+.+|.|++.+.++..
T Consensus 11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~ 89 (254)
T PF04826_consen 11 AQELQKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQE 89 (254)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHH
Confidence 3578899999985 4799999999999999865 6899999999999999999999999999999999999999987554
Q ss_pred hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHh
Q 021242 84 MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGI 163 (315)
Q Consensus 84 i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~L 163 (315)
.++. .++.+++...+.+ -+.+.+..+.++|.+|+..++....+.. . ++.++.+|. .|+..++..++++|.||
T Consensus 90 ~Ik~-~i~~Vc~~~~s~~--lns~~Q~agLrlL~nLtv~~~~~~~l~~--~-i~~ll~LL~--~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 90 QIKM-YIPQVCEETVSSP--LNSEVQLAGLRLLTNLTVTNDYHHMLAN--Y-IPDLLSLLS--SGSEKTKVQVLKVLVNL 161 (254)
T ss_pred HHHH-HHHHHHHHHhcCC--CCCHHHHHHHHHHHccCCCcchhhhHHh--h-HHHHHHHHH--cCChHHHHHHHHHHHHh
Confidence 3343 5777777665421 3457788999999999988888887753 4 899999999 67889999999999999
Q ss_pred ccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcC
Q 021242 164 ALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGC 208 (315)
Q Consensus 164 s~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~ 208 (315)
|.+|++...++.++++..++.++.++.+.++...++....|+..+
T Consensus 162 S~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 162 SENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred ccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 999999999999999999999997555667788899999999653
|
|
| >KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.3e-16 Score=153.42 Aligned_cols=280 Identities=21% Similarity=0.258 Sum_probs=218.8
Q ss_pred hhHHHHHHHhCCC--------CHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcC---------CC---HHHH
Q 021242 6 RTVRSLVTKLGSV--------SEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYS---------SS---HAFQ 65 (315)
Q Consensus 6 ~~i~~Lv~~L~~~--------~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~---------~~---~~~~ 65 (315)
.|...+=.+|... +..-.+.|+.+|..+. .+++.|..+-+.|++..+-+||.- .+ ..++
T Consensus 290 aYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~S-FDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLR 368 (2195)
T KOG2122|consen 290 AYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLS-FDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALR 368 (2195)
T ss_pred HHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhh-ccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHH
Confidence 4445555556433 2233347888888887 568999999999999999998842 12 3589
Q ss_pred HHHHHHHHhcCcccc-hh-hh-hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhh-cCCCc-hhhhhhccccHHHHH
Q 021242 66 ENAAATLLNLSITSR-DS-LM-STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLL-VVDSY-RPIIGAKRDIIHSLI 140 (315)
Q Consensus 66 ~~a~~~L~~la~~~~-~~-~i-~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls-~~~~~-~~~i~~~~g~i~~Lv 140 (315)
.+|..+|-||.+++. ++ .+ ...|+++.++.-|.+ ...++.+..+.+|+||+ ..+.| +..+.+. |-+..|+
T Consensus 369 rYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s----~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~-GsVtaLa 443 (2195)
T KOG2122|consen 369 RYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLIS----APEELLQVYASVLRNLSWRADSNMKKVLRET-GSVTALA 443 (2195)
T ss_pred HHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhc----ChHHHHHHHHHHHHhccccccccHHHHHHhh-hhHHHHH
Confidence 999999999999985 33 33 478999999999996 56789999999999999 55555 6677775 5478887
Q ss_pred HHhhccCCChHHHHHHHHHHHHhcc-CCCcHHHHHh-hCCcHHHHHHHhcC---CCcchHHHHHHHHHHHh----cChhh
Q 021242 141 EIIKTRNSPLRSVKDALKALFGIAL-YPLNRYQVIA-LGGVQPLFSLVVNG---GRAGIVEDASAVIAQIA----GCEES 211 (315)
Q Consensus 141 ~ll~~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~-~g~v~~L~~lL~~~---~~~~~~~~a~~~L~~L~----~~~~~ 211 (315)
...-. +......+..+.+||||+. ..+|+..|.. -|++..|+.+|.-+ ....+.+.+-++|+|.+ .++..
T Consensus 444 ~~al~-~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~y 522 (2195)
T KOG2122|consen 444 ACALR-NKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDY 522 (2195)
T ss_pred HHHHH-hcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchH
Confidence 64431 3344567889999999998 4689998876 69999999999411 12356888999999965 46788
Q ss_pred HHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHH
Q 021242 212 VDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALL 291 (315)
Q Consensus 212 ~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L 291 (315)
|+.+.++.++..|++.|+.. +-.+--++|++||||+..+.. -.+.+.+ .|+++-|..|+++....+-.-+++.|
T Consensus 523 RQILR~~NCLq~LLQ~LKS~---SLTiVSNaCGTLWNLSAR~p~-DQq~LwD--~gAv~mLrnLIhSKhkMIa~GSaaAL 596 (2195)
T KOG2122|consen 523 RQILRRHNCLQTLLQHLKSH---SLTIVSNACGTLWNLSARSPE-DQQMLWD--DGAVPMLRNLIHSKHKMIAMGSAAAL 596 (2195)
T ss_pred HHHHHHhhHHHHHHHHhhhc---ceEEeecchhhhhhhhcCCHH-HHHHHHh--cccHHHHHHHHhhhhhhhhhhHHHHH
Confidence 88888899999999999975 778888999999999876543 3355555 99999999999999888888899999
Q ss_pred HHHhhCC
Q 021242 292 KILVDDG 298 (315)
Q Consensus 292 ~~l~~~~ 298 (315)
+||-..+
T Consensus 597 rNLln~R 603 (2195)
T KOG2122|consen 597 RNLLNFR 603 (2195)
T ss_pred HHHhcCC
Confidence 9998776
|
|
| >KOG4199 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-14 Score=125.98 Aligned_cols=269 Identities=16% Similarity=0.190 Sum_probs=213.4
Q ss_pred CCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcC--CCHHHHHHHHHHHHhcCcc-cc-hhhhhhcCchH
Q 021242 16 GSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYS--SSHAFQENAAATLLNLSIT-SR-DSLMSTRGLLD 91 (315)
Q Consensus 16 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~~la~~-~~-~~~i~~~~~i~ 91 (315)
.+++.....+++.+|..+....| .+.++.++..++.+|.. .+.++-...+..+..-+.. +. ++.+.+.+..+
T Consensus 117 ~~~~~~~l~ksL~al~~lt~~qp----dl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~ 192 (461)
T KOG4199|consen 117 ESPNESVLKKSLEAINSLTHKQP----DLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILE 192 (461)
T ss_pred hCCchhHHHHHHHHHHHhhcCCc----chhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHH
Confidence 45677888899999999886655 47788889999999954 4566777788888665554 43 45666999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhc---------cccHHHHHHHhhccCCChHHHHHHHHHHHH
Q 021242 92 AISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAK---------RDIIHSLIEIIKTRNSPLRSVKDALKALFG 162 (315)
Q Consensus 92 ~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~---------~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~ 162 (315)
.+.+.|..+ +..++.....++++-|...++.|..++.. .|....|+..+... -+|++...++.+|..
T Consensus 193 Li~~~l~~~---gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~-~dp~~L~~l~~tl~~ 268 (461)
T KOG4199|consen 193 LILQVLNRE---GKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAG-IDPDSLVSLSTTLKA 268 (461)
T ss_pred HHHHHHccc---CccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHcc-CCccHHHHHHHHHHH
Confidence 999898753 45567778999999999888776554332 23367888888764 458888999999999
Q ss_pred hccCCCcHHHHHhhCCcHHHHHHHhcCCCcc---hHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHH
Q 021242 163 IALYPLNRYQVIALGGVQPLFSLVVNGGRAG---IVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVK 239 (315)
Q Consensus 163 Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~---~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~ 239 (315)
|+-.++.+..+.+.|++..|++++.++.+.. +...++.+|+.|+.+++.+..|++.||.+.++.++... .+++.+.
T Consensus 269 lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h-~~~p~Vi 347 (461)
T KOG4199|consen 269 LAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRH-SDDPLVI 347 (461)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHc-CCChHHH
Confidence 9999999999999999999999996433333 44669999999999999999999999999999977654 3588899
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhh-C-CHHHHHHHHHHHHHHhh
Q 021242 240 ENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQN-G-SAKGKTKAVALLKILVD 296 (315)
Q Consensus 240 ~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~-~-~~~~k~~A~~~L~~l~~ 296 (315)
+.++.++.-||...+ +....+++ .|+-...+.-++. + ...++++|+++++++..
T Consensus 348 ~~~~a~i~~l~LR~p-dhsa~~ie--~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~ 403 (461)
T KOG4199|consen 348 QEVMAIISILCLRSP-DHSAKAIE--AGAADLAVQAMKAHPVAAQVQRNACNMIRNIVV 403 (461)
T ss_pred HHHHHHHHHHHhcCc-chHHHHHh--cchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 999999999998665 45567777 7777777766664 4 57999999999999954
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-14 Score=126.14 Aligned_cols=230 Identities=15% Similarity=0.118 Sum_probs=184.8
Q ss_pred HHhCCCHHHHHHHHcC-CCHHHHHHHHHHHHhcCcccc-hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc
Q 021242 44 ISEAGSIPYLAEILYS-SSHAFQENAAATLLNLSITSR-DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV 121 (315)
Q Consensus 44 i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~la~~~~-~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~ 121 (315)
+.+.+-+..|+.+|+. .||.+++.+..++.|.+..+. +.++.+.|+++.+..+|.+ +++.++..|.++|.|++.
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~----p~~~vr~~AL~aL~Nls~ 83 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLND----PNPSVREKALNALNNLSV 83 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCC----CChHHHHHHHHHHHhcCC
Confidence 3567778999999985 689999999999999988876 5678899999999999997 788999999999999999
Q ss_pred CCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHH
Q 021242 122 VDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAV 201 (315)
Q Consensus 122 ~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~ 201 (315)
..+++..+.. .++.++..+.++..+..++..++++|.||+..++.+..+. +.++.++++|. .++..++..++++
T Consensus 84 ~~en~~~Ik~---~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~-~G~~~~k~~vLk~ 157 (254)
T PF04826_consen 84 NDENQEQIKM---YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLS-SGSEKTKVQVLKV 157 (254)
T ss_pred ChhhHHHHHH---HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHH-cCChHHHHHHHHH
Confidence 9999988753 4788888666434567888999999999998887776664 57999999996 4678899999999
Q ss_pred HHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHH------------HHHHHHHHccC-c
Q 021242 202 IAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGER------------AAEEVKEMAMQ-V 268 (315)
Q Consensus 202 L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~------------~~~~i~~~~~g-~ 268 (315)
|.|||.++...+.+..+++...++.++... .+......++.++.||..+-..+ .-..+.. +.+ .
T Consensus 158 L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~--~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~-e~~~~ 234 (254)
T PF04826_consen 158 LVNLSENPDMTRELLSAQVLSSFLSLFNSS--ESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFG-ESSQL 234 (254)
T ss_pred HHHhccCHHHHHHHHhccchhHHHHHHccC--CccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHc-cHHHH
Confidence 999999999999999999999999999864 36777888999999996432211 1111221 122 4
Q ss_pred HHHHHHHHhhCCHHHHHH
Q 021242 269 ADGIADVAQNGSAKGKTK 286 (315)
Q Consensus 269 ~~~L~~ll~~~~~~~k~~ 286 (315)
.+.|..+..+.|++||++
T Consensus 235 ~~~l~~l~~h~d~ev~~~ 252 (254)
T PF04826_consen 235 AKKLQALANHPDPEVKEQ 252 (254)
T ss_pred HHHHHHHHcCCCHHHhhh
Confidence 566667777778887765
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.8e-12 Score=120.96 Aligned_cols=278 Identities=14% Similarity=0.147 Sum_probs=210.4
Q ss_pred hhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc-hh
Q 021242 4 KRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR-DS 82 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~-~~ 82 (315)
-..+.+.|...|.++++.+|.-++..|..++.++......+.+.+.++.++.++.+++..+...|+.+|.+++.++. -.
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~ 154 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLE 154 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHH
Confidence 35677889999999999999999999999998876667778889999999999999999999999999999998764 33
Q ss_pred hhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcC-CCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHH
Q 021242 83 LMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVV-DSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALF 161 (315)
Q Consensus 83 ~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~ 161 (315)
.+..++.++.|..++.. .+..++..+..++.+++.. ++....+.. .|+++.++..+. ++|.-++.+|+..|.
T Consensus 155 ~l~~~~~~~~L~~l~~~----~~~~vR~Rv~el~v~i~~~S~~~~~~~~~-sgll~~ll~eL~--~dDiLvqlnalell~ 227 (503)
T PF10508_consen 155 QLFDSNLLSKLKSLMSQ----SSDIVRCRVYELLVEIASHSPEAAEAVVN-SGLLDLLLKELD--SDDILVQLNALELLS 227 (503)
T ss_pred HHhCcchHHHHHHHHhc----cCHHHHHHHHHHHHHHHhcCHHHHHHHHh-ccHHHHHHHHhc--CccHHHHHHHHHHHH
Confidence 45578889999999985 4667888899999999864 444555554 588999999999 568788999999999
Q ss_pred HhccCCCcHHHHHhhCCcHHHHHHHhcCCCcc-h----HHHHHHHHHHHhcC-hhhHHHHHhcC-CHHHHHHHhhcCCCC
Q 021242 162 GIALYPLNRYQVIALGGVQPLFSLVVNGGRAG-I----VEDASAVIAQIAGC-EESVDEFKKCC-GIGVLVDLLDLGTGS 234 (315)
Q Consensus 162 ~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~-~----~~~a~~~L~~L~~~-~~~~~~i~~~~-~i~~Lv~ll~~~~~~ 234 (315)
.|+..+.+...+.+.|+++.+..++.+....+ . .-..+....+++.. +... +.... .+..+.+++...
T Consensus 228 ~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v--~~~~p~~~~~l~~~~~s~--- 302 (503)
T PF10508_consen 228 ELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEV--LELYPAFLERLFSMLESQ--- 302 (503)
T ss_pred HHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHH--HHHHHHHHHHHHHHhCCC---
Confidence 99999999999999999999999996432222 1 22244566666663 2211 11111 244555555554
Q ss_pred ChhHHHHHHHHHHHHhccCCHHHHHHH-HHHccCcHHHHH----HHHhhCCHHHHHHHHHHHHHHhh
Q 021242 235 GHRVKENAVSALLNLVNFGGERAAEEV-KEMAMQVADGIA----DVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 235 ~~~~~~~a~~~L~~l~~~~~~~~~~~i-~~~~~g~~~~L~----~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
+...+..|..++..++... +.+..+ .. ..+.++..+ ....+++.++|..+-..|.++-.
T Consensus 303 d~~~~~~A~dtlg~igst~--~G~~~L~~~-~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~ 366 (503)
T PF10508_consen 303 DPTIREVAFDTLGQIGSTV--EGKQLLLQK-QGPAMKHVLKAIGDAIKSGSTELKLRALHALASILT 366 (503)
T ss_pred ChhHHHHHHHHHHHHhCCH--HHHHHHHhh-cchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence 7888999999999998642 333444 33 233444444 44556778899999988888844
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.7e-13 Score=132.01 Aligned_cols=226 Identities=17% Similarity=0.172 Sum_probs=187.8
Q ss_pred HHHHHHHHHHHHHhccCchhhHHHHh-CCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc---hhhhhhcCchHHHHHH
Q 021242 21 QTRAEALAELRLLSKHDAEIRPMISE-AGSIPYLAEILYSSSHAFQENAAATLLNLSITSR---DSLMSTRGLLDAISHV 96 (315)
Q Consensus 21 ~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~---~~~i~~~~~i~~L~~l 96 (315)
.+|..|.++|-||.-.+..||..+-. .|.|+.+|..|.+...+++..-+.+|.||+=..+ ++++.+.|-+..|...
T Consensus 366 aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~ 445 (2195)
T KOG2122|consen 366 ALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAAC 445 (2195)
T ss_pred HHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHH
Confidence 68999999999999888889887765 8999999999998888999999999999997643 5677788899999877
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHhhc-CCCchhhhhhccccHHHHHHHhhcc--CCChHHHHHHHHHHHHhccC----CCc
Q 021242 97 LRHHSTSTSSAAVQSSAATLHSLLV-VDSYRPIIGAKRDIIHSLIEIIKTR--NSPLRSVKDALKALFGIALY----PLN 169 (315)
Q Consensus 97 L~~~~~~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~ll~~~--~~~~~~~~~a~~aL~~Ls~~----~~~ 169 (315)
.-.. -..........+||||+. -.+||..|.+..|++..||.+|... .....+.+.|...|.|.++. .+.
T Consensus 446 al~~---~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~y 522 (2195)
T KOG2122|consen 446 ALRN---KKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDY 522 (2195)
T ss_pred HHHh---cccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchH
Confidence 6431 233556688899999996 5589999998889999999999742 23467889999999998874 345
Q ss_pred HHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHH
Q 021242 170 RYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLN 248 (315)
Q Consensus 170 ~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~ 248 (315)
|..+.+..++..|++.|.+ ....++-++|++|+||+. +++..+.+++.|+|+.|..++.+. +.-+-+-+..+|.|
T Consensus 523 RQILR~~NCLq~LLQ~LKS-~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSK---hkMIa~GSaaALrN 598 (2195)
T KOG2122|consen 523 RQILRRHNCLQTLLQHLKS-HSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSK---HKMIAMGSAAALRN 598 (2195)
T ss_pred HHHHHHhhHHHHHHHHhhh-cceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhh---hhhhhhhHHHHHHH
Confidence 5566778999999999974 467788899999999955 899999999999999999999875 66777778888999
Q ss_pred HhccC
Q 021242 249 LVNFG 253 (315)
Q Consensus 249 l~~~~ 253 (315)
|-.+-
T Consensus 599 Lln~R 603 (2195)
T KOG2122|consen 599 LLNFR 603 (2195)
T ss_pred HhcCC
Confidence 87543
|
|
| >KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.5e-11 Score=110.17 Aligned_cols=280 Identities=15% Similarity=0.158 Sum_probs=195.7
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc-hhh
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR-DSL 83 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~-~~~ 83 (315)
+.-|.-||..|.-++.+........|..++-. .+|+..+.+.|.++.|++++...+++++...+..|+|++++.. +..
T Consensus 303 kniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~K 381 (791)
T KOG1222|consen 303 KNIVAMLVKALDRSNSSLLTLVIKFLKKLSIF-DENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPK 381 (791)
T ss_pred HhHHHHHHHHHcccchHHHHHHHHHHHHhhhh-ccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHH
Confidence 44566788888888778888888888888877 4799999999999999999999999999999999999999975 555
Q ss_pred hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHh
Q 021242 84 MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGI 163 (315)
Q Consensus 84 i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~L 163 (315)
+++.|.+|.|..++.+ . .-+..|...+.+++..+..+..+..+ .+|+.+.+.+-.. .+.++-...+..-.||
T Consensus 382 Mv~~GllP~l~~ll~~----d--~~~~iA~~~lYh~S~dD~~K~MfayT-dci~~lmk~v~~~-~~~~vdl~lia~ciNl 453 (791)
T KOG1222|consen 382 MVNGGLLPHLASLLDS----D--TKHGIALNMLYHLSCDDDAKAMFAYT-DCIKLLMKDVLSG-TGSEVDLALIALCINL 453 (791)
T ss_pred HhhccchHHHHHHhCC----c--ccchhhhhhhhhhccCcHHHHHHHHH-HHHHHHHHHHHhc-CCceecHHHHHHHHHH
Confidence 6699999999999986 1 23457889999999999999999986 5599999876643 3334434444444577
Q ss_pred ccCCCcHHHHHhhCCcHH-------------------------------------HHHHHhcCCCcchHHHHHHHHHHHh
Q 021242 164 ALYPLNRYQVIALGGVQP-------------------------------------LFSLVVNGGRAGIVEDASAVIAQIA 206 (315)
Q Consensus 164 s~~~~~~~~i~~~g~v~~-------------------------------------L~~lL~~~~~~~~~~~a~~~L~~L~ 206 (315)
|.+..|...+++-.++.. |...+..+.+..+.-.++++|.||.
T Consensus 454 ~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~ 533 (791)
T KOG1222|consen 454 CLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLK 533 (791)
T ss_pred HhccccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcc
Confidence 776555444433222222 1222211123345556888888876
Q ss_pred cChh--------------------------------------------hHHHHHhcCCHHHHHHHhhcCCCCChhHHHHH
Q 021242 207 GCEE--------------------------------------------SVDEFKKCCGIGVLVDLLDLGTGSGHRVKENA 242 (315)
Q Consensus 207 ~~~~--------------------------------------------~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a 242 (315)
..+- ...-+..++.|+.++++|+... .+.+.--+-
T Consensus 534 v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~Q-eDDEfV~Qi 612 (791)
T KOG1222|consen 534 VTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQ-EDDEFVVQI 612 (791)
T ss_pred cCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhc-ccchHHHHH
Confidence 3211 1111222345777888777542 233334445
Q ss_pred HHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhC
Q 021242 243 VSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDD 297 (315)
Q Consensus 243 ~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~ 297 (315)
..++.++..+. ..++.|++ +...-..|++++++.+.++|+-+...|-.+.++
T Consensus 613 iyVF~Q~l~He--~tr~~mik-et~~~AylIDLMHDkN~eiRkVCDn~LdIiae~ 664 (791)
T KOG1222|consen 613 IYVFLQFLKHE--LTRRLMIK-ETALGAYLIDLMHDKNAEIRKVCDNALDIIAEH 664 (791)
T ss_pred HHHHHHHHHHH--HHHHHHHh-hccchHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 56666666653 35577777 355667888999999999999988888777643
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.9e-10 Score=108.77 Aligned_cols=271 Identities=15% Similarity=0.085 Sum_probs=205.1
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc--hhhhhh
Q 021242 9 RSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR--DSLMST 86 (315)
Q Consensus 9 ~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~--~~~i~~ 86 (315)
+.+...|+..+.+....++..|..+.+.. .-..+ ..+..+.|...|.++++.++..+++.|.+++.++. ..++.+
T Consensus 41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~--~~~~l-~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~ 117 (503)
T PF10508_consen 41 PVLFDCLNTSNREQVELICDILKRLLSAL--SPDSL-LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVD 117 (503)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhcc--CHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcC
Confidence 34666778777777778888888887542 22222 56778999999999999999999999999988765 356678
Q ss_pred cCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhcc-
Q 021242 87 RGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL- 165 (315)
Q Consensus 87 ~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~- 165 (315)
.+.++.++..+.+ ++.++...|+.+|.+|+..+.+-..+...+. +..|..++. ..+..++..++.++.+++.
T Consensus 118 ~~l~~~i~~~L~~----~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~-~~~L~~l~~--~~~~~vR~Rv~el~v~i~~~ 190 (503)
T PF10508_consen 118 NELLPLIIQCLRD----PDLSVAKAAIKALKKLASHPEGLEQLFDSNL-LSKLKSLMS--QSSDIVRCRVYELLVEIASH 190 (503)
T ss_pred ccHHHHHHHHHcC----CcHHHHHHHHHHHHHHhCCchhHHHHhCcch-HHHHHHHHh--ccCHHHHHHHHHHHHHHHhc
Confidence 9999999999997 7889999999999999987776666655444 899999998 4466788889999999987
Q ss_pred CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCCh---h-HHHH
Q 021242 166 YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGH---R-VKEN 241 (315)
Q Consensus 166 ~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~---~-~~~~ 241 (315)
+++....+.+.|.++.++..+. ++|.-++..++.+|..|+..+++.+-+.+.|.++.+..++.... .++ . .-..
T Consensus 191 S~~~~~~~~~sgll~~ll~eL~-~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~-~dp~~~~~~l~g 268 (503)
T PF10508_consen 191 SPEAAEAVVNSGLLDLLLKELD-SDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSE-EDPRLSSLLLPG 268 (503)
T ss_pred CHHHHHHHHhccHHHHHHHHhc-CccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccc-cCCcccchhhhh
Confidence 5666677778899999999996 45666788999999999999999999999999999999998642 222 1 1122
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 021242 242 AVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILV 295 (315)
Q Consensus 242 a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~ 295 (315)
.+....+++...+ . .+...-...+..|.++.++.|+..+..|-..+-.+.
T Consensus 269 ~~~f~g~la~~~~-~---~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~ig 318 (503)
T PF10508_consen 269 RMKFFGNLARVSP-Q---EVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIG 318 (503)
T ss_pred HHHHHHHHHhcCh-H---HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHh
Confidence 3345555655322 2 222100234455556777889999999988887775
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-11 Score=94.98 Aligned_cols=114 Identities=22% Similarity=0.268 Sum_probs=103.7
Q ss_pred hhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc--h
Q 021242 4 KRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR--D 81 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~--~ 81 (315)
+.+.++.++++|.++++..+..++.+|.+++..++..+..+.+.|++|.+++++.+.++.++..|+++|.+++.+.. .
T Consensus 5 ~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~ 84 (120)
T cd00020 5 QAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNK 84 (120)
T ss_pred HcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHH
Confidence 45689999999999999999999999999999888999999999999999999999999999999999999999874 3
Q ss_pred hhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc
Q 021242 82 SLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV 121 (315)
Q Consensus 82 ~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~ 121 (315)
..+.+.|+++.|++++.+ .+.+++..++++|.+|+.
T Consensus 85 ~~~~~~g~l~~l~~~l~~----~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 85 LIVLEAGGVPKLVNLLDS----SNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHCCChHHHHHHHhc----CCHHHHHHHHHHHHHhhC
Confidence 455688999999999997 578999999999999863
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=99.36 E-value=4e-11 Score=92.01 Aligned_cols=117 Identities=21% Similarity=0.264 Sum_probs=103.4
Q ss_pred HHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcC-hhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHh
Q 021242 172 QVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGC-EESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLV 250 (315)
Q Consensus 172 ~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~ 250 (315)
.+++.|+++.+++++. +++..++..++.+|.+++.. ++.+..+.+.++++.+++++.++ ++.++..++++|++++
T Consensus 2 ~~~~~~~i~~l~~~l~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~---~~~v~~~a~~~L~~l~ 77 (120)
T cd00020 2 AVIQAGGLPALVSLLS-SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE---DEEVVKAALWALRNLA 77 (120)
T ss_pred hHHHcCChHHHHHHHH-cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC---CHHHHHHHHHHHHHHc
Confidence 4678899999999996 56778899999999999986 88999999889999999999975 8999999999999999
Q ss_pred ccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 021242 251 NFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILV 295 (315)
Q Consensus 251 ~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~ 295 (315)
... +.....+.+ .|+++.|..++++++..+++.|.++|.++.
T Consensus 78 ~~~-~~~~~~~~~--~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 78 AGP-EDNKLIVLE--AGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred cCc-HHHHHHHHH--CCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 754 345566666 899999999999999999999999998875
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.8e-10 Score=102.19 Aligned_cols=284 Identities=13% Similarity=0.097 Sum_probs=201.2
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcC----CC---HHHHHHHHHHHHhcCccc
Q 021242 7 TVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYS----SS---HAFQENAAATLLNLSITS 79 (315)
Q Consensus 7 ~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~----~~---~~~~~~a~~~L~~la~~~ 79 (315)
.++.|.+..+|++.++..+..++|.+++..+.++|..+.+.||-..+++.|+. .+ .+....+...|.|...++
T Consensus 88 ~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~ 167 (604)
T KOG4500|consen 88 ALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDS 167 (604)
T ss_pred HHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCc
Confidence 45667777788888999999999999999999999999999997777777754 22 356666778888888776
Q ss_pred c--hhhhhhcCchHHHHHHHhcC------------------------------------------CCCCCHHHHHHHHHH
Q 021242 80 R--DSLMSTRGLLDAISHVLRHH------------------------------------------STSTSSAAVQSSAAT 115 (315)
Q Consensus 80 ~--~~~i~~~~~i~~L~~lL~~~------------------------------------------~~~~~~~~~~~a~~~ 115 (315)
+ +.-+.+.|.++.|..++--+ ....+++..+.+..+
T Consensus 168 ~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~fei 247 (604)
T KOG4500|consen 168 RELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEI 247 (604)
T ss_pred HHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHH
Confidence 4 33334666666554222100 001234455566677
Q ss_pred HHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHH-------HHHHHHHHHHhccCCCcHHHHHhhC-CcHHHHHHHh
Q 021242 116 LHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRS-------VKDALKALFGIALYPLNRYQVIALG-GVQPLFSLVV 187 (315)
Q Consensus 116 L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~-------~~~a~~aL~~Ls~~~~~~~~i~~~g-~v~~L~~lL~ 187 (315)
+...+.++..+..+.+. |++.-++.+++.. .+..- ..-++....-|...++.-.++...+ .+..+...+.
T Consensus 248 la~~aend~Vkl~la~~-gl~e~~~~lv~~~-k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~ 325 (604)
T KOG4500|consen 248 LAKAAENDLVKLSLAQN-GLLEDSIDLVRNM-KDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFR 325 (604)
T ss_pred HHHHhcCcceeeehhhc-chHHHHHHHHHhc-ccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhc
Confidence 77777788888888874 6788899988842 12111 2223333333444555555555444 6677777775
Q ss_pred cCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhc-C-CCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHc
Q 021242 188 NGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDL-G-TGSGHRVKENAVSALLNLVNFGGERAAEEVKEMA 265 (315)
Q Consensus 188 ~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~-~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~ 265 (315)
+ .+......+.-++.|+++.+..+..+++.+.+..|++.+.. . .+.+-+.+..++++|.|+.-.-+ .+..++.
T Consensus 326 S-~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~--nka~~~~-- 400 (604)
T KOG4500|consen 326 S-DDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS--NKAHFAP-- 400 (604)
T ss_pred C-CchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC--chhhccc--
Confidence 3 45667777777899999999999999999999999997754 2 12355778889999999986433 4467887
Q ss_pred cCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhC
Q 021242 266 MQVADGIADVAQNGSAKGKTKAVALLKILVDD 297 (315)
Q Consensus 266 ~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~ 297 (315)
+|+.+.++..++...|.+..+--..|+.++++
T Consensus 401 aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~ 432 (604)
T KOG4500|consen 401 AGVTEAILLQLKLASPPVTFKLLGTLRMIRDS 432 (604)
T ss_pred cchHHHHHHHHHhcCCcchHHHHHHHHHHHhc
Confidence 99999999999999888888888888777654
|
|
| >KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.7e-10 Score=100.74 Aligned_cols=276 Identities=13% Similarity=0.098 Sum_probs=199.7
Q ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcC-CC-------HHHHHHHHHHHHhcCccc
Q 021242 9 RSLVTKLGSV-SEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYS-SS-------HAFQENAAATLLNLSITS 79 (315)
Q Consensus 9 ~~Lv~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~-------~~~~~~a~~~L~~la~~~ 79 (315)
..+++.|.+. .++.+.-....+...+ +++..+-.++++|.++.++++++. .+ ......++...--+..++
T Consensus 226 ~~l~~ll~~~v~~d~~eM~feila~~a-end~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGD 304 (604)
T KOG4500|consen 226 FMLLQLLPSMVREDIDEMIFEILAKAA-ENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGD 304 (604)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHh-cCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCc
Confidence 4566777655 4455544444444444 557889999999999999999965 21 123334444444444444
Q ss_pred c--hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhcc---CCChHHHH
Q 021242 80 R--DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTR---NSPLRSVK 154 (315)
Q Consensus 80 ~--~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~---~~~~~~~~ 154 (315)
+ .++...+..+..+.+.+++ .+.+....++-+|.|+++.++++..+++. +++..|++++... .++...+.
T Consensus 305 eSMq~L~~~p~~l~~~~sw~~S----~d~~l~t~g~LaigNfaR~D~~ci~~v~~-~~~nkL~~~l~~~~~vdgnV~~qh 379 (604)
T KOG4500|consen 305 ESMQKLHADPQFLDFLESWFRS----DDSNLITMGSLAIGNFARRDDICIQLVQK-DFLNKLISCLMQEKDVDGNVERQH 379 (604)
T ss_pred hHHHHHhcCcHHHHHHHHHhcC----CchhHHHHHHHHHHhhhccchHHHHHHHH-HHHHHHHHHHHHhcCCCccchhHH
Confidence 4 3344455589999999997 67788888999999999999999999884 8899999998641 35667888
Q ss_pred HHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChh-hHHHHHhcC-CHHHHHHHhhcCC
Q 021242 155 DALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEE-SVDEFKKCC-GIGVLVDLLDLGT 232 (315)
Q Consensus 155 ~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~-~~~~i~~~~-~i~~Lv~ll~~~~ 232 (315)
.++.+|+|+.....||..+..+|++..++.++.. ..++++.+-+++++.+-...+ ...++.+.. -+..|+++-+..
T Consensus 380 A~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~-~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~- 457 (604)
T KOG4500|consen 380 ACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKL-ASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSP- 457 (604)
T ss_pred HHHHHHHhccccCCchhhccccchHHHHHHHHHh-cCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCC-
Confidence 8999999999999999999999999999999974 578899999999998755433 333343332 377888877764
Q ss_pred CCChhHHHHHHHHHHHHhccCC-HHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 021242 233 GSGHRVKENAVSALLNLVNFGG-ERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILV 295 (315)
Q Consensus 233 ~~~~~~~~~a~~~L~~l~~~~~-~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~ 295 (315)
+...+...+...+..+-+++. .++...+.+ .|++...+.++.+..-..+..|.-.|-.++
T Consensus 458 -D~aGv~gESnRll~~lIkHs~~kdv~~tvpk--sg~ik~~Vsm~t~~hi~mqnEalVal~~~~ 518 (604)
T KOG4500|consen 458 -DFAGVAGESNRLLLGLIKHSKYKDVILTVPK--SGGIKEKVSMFTKNHINMQNEALVALLSTE 518 (604)
T ss_pred -ccchhhhhhhHHHHHHHHhhHhhhhHhhccc--cccHHHHHHHHHHhhHHHhHHHHHHHHHHH
Confidence 355566677777777776632 245566766 899999999888877777777766555543
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1e-09 Score=97.13 Aligned_cols=226 Identities=15% Similarity=0.069 Sum_probs=126.5
Q ss_pred hhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhh
Q 021242 4 KRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSL 83 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~ 83 (315)
++..++.|+..|.+.+..+|..|+.+|..+-. ..+++.+..++++.++.+|..|+++|..+...+..
T Consensus 21 ~~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-- 87 (280)
T PRK09687 21 KKLNDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-- 87 (280)
T ss_pred hhccHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc--
Confidence 45677888889988888899888888887742 23467777777777788888888888777543321
Q ss_pred hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHH---
Q 021242 84 MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKAL--- 160 (315)
Q Consensus 84 i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL--- 160 (315)
....++.|..++.+ .+++.++..++.+|.++....... . ..+++.+...+. +.++.++..|+++|
T Consensus 88 --~~~a~~~L~~l~~~---D~d~~VR~~A~~aLG~~~~~~~~~----~-~~a~~~l~~~~~--D~~~~VR~~a~~aLg~~ 155 (280)
T PRK09687 88 --QDNVFNILNNLALE---DKSACVRASAINATGHRCKKNPLY----S-PKIVEQSQITAF--DKSTNVRFAVAFALSVI 155 (280)
T ss_pred --hHHHHHHHHHHHhc---CCCHHHHHHHHHHHhccccccccc----c-hHHHHHHHHHhh--CCCHHHHHHHHHHHhcc
Confidence 22345666666432 156677777777777764211100 0 011333334444 23444555555555
Q ss_pred ----------------------------HHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhH
Q 021242 161 ----------------------------FGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESV 212 (315)
Q Consensus 161 ----------------------------~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~ 212 (315)
..+.... ..+++.|+..|. +++..++..|...|..+-
T Consensus 156 ~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~--------~~~~~~L~~~L~-D~~~~VR~~A~~aLg~~~------ 220 (280)
T PRK09687 156 NDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN--------PDIREAFVAMLQ-DKNEEIRIEAIIGLALRK------ 220 (280)
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC--------HHHHHHHHHHhc-CCChHHHHHHHHHHHccC------
Confidence 4431100 022334444442 344444444444444321
Q ss_pred HHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHh-hCCHHHHHHHHHHH
Q 021242 213 DEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQ-NGSAKGKTKAVALL 291 (315)
Q Consensus 213 ~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~-~~~~~~k~~A~~~L 291 (315)
+..+++.|++.+..+ + ++..++.+|..+ +. .-++|.|..+++ ++|++++.+|.+.|
T Consensus 221 ----~~~av~~Li~~L~~~---~--~~~~a~~ALg~i---g~-----------~~a~p~L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 221 ----DKRVLSVLIKELKKG---T--VGDLIIEAAGEL---GD-----------KTLLPVLDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred ----ChhHHHHHHHHHcCC---c--hHHHHHHHHHhc---CC-----------HhHHHHHHHHHhhCCChhHHHHHHHHH
Confidence 112456666666643 2 333444444443 11 125677788886 67889999888877
Q ss_pred H
Q 021242 292 K 292 (315)
Q Consensus 292 ~ 292 (315)
+
T Consensus 278 ~ 278 (280)
T PRK09687 278 K 278 (280)
T ss_pred h
Confidence 5
|
|
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=99.26 E-value=3e-09 Score=98.18 Aligned_cols=279 Identities=12% Similarity=0.097 Sum_probs=191.0
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCC-CHHHHHHHHHHHHhcCcccc-hhh
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSS-SHAFQENAAATLLNLSITSR-DSL 83 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~la~~~~-~~~ 83 (315)
....+++.+|...+.-++..|...|..+...++.+.......-...-|...|++. +...+..|+.+|..+...++ +..
T Consensus 101 ~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~ 180 (429)
T cd00256 101 KTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFA 180 (429)
T ss_pred cchHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHH
Confidence 3345666788888888999999999988755443211111111223444555543 35678888999999888876 556
Q ss_pred hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHh
Q 021242 84 MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGI 163 (315)
Q Consensus 84 i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~L 163 (315)
+.+.++++.|+.+|+... ...+..-.++-++|-||..++....+.. .++|+.|+++++.. ...++.+.++.+|.||
T Consensus 181 f~~~~~v~~L~~~L~~~~--~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~-~~~i~~l~~i~k~s-~KEKvvRv~l~~l~Nl 256 (429)
T cd00256 181 FVLADGVPTLVKLLSNAT--LGFQLQYQSIFCIWLLTFNPHAAEVLKR-LSLIQDLSDILKES-TKEKVIRIVLAIFRNL 256 (429)
T ss_pred HHHccCHHHHHHHHhhcc--ccHHHHHHHHHHHHHHhccHHHHHhhcc-ccHHHHHHHHHHhh-hhHHHHHHHHHHHHHH
Confidence 667779999999998531 2568888999999999998876666654 57899999999963 4668999999999999
Q ss_pred ccCC-------CcHHHHHhhCCcHHHHHHHhcC--CCcchHHHHH-------HHHHHHh---------------------
Q 021242 164 ALYP-------LNRYQVIALGGVQPLFSLVVNG--GRAGIVEDAS-------AVIAQIA--------------------- 206 (315)
Q Consensus 164 s~~~-------~~~~~i~~~g~v~~L~~lL~~~--~~~~~~~~a~-------~~L~~L~--------------------- 206 (315)
...+ .....|+..|..+ +++.|... .|+.+.+..- ..+..++
T Consensus 257 l~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~ 335 (429)
T cd00256 257 ISKRVDREVKKTAALQMVQCKVLK-TLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHK 335 (429)
T ss_pred hhcccccchhhhHHHHHHHcChHH-HHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCC
Confidence 9843 1234566666655 55555332 3444443311 1222233
Q ss_pred ---cChhhHHHHHhcCC--HHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCH
Q 021242 207 ---GCEESVDEFKKCCG--IGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSA 281 (315)
Q Consensus 207 ---~~~~~~~~i~~~~~--i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~ 281 (315)
.+.+|...|.+.++ +..|+++|... .++.+..-||.=+..+++..+ .. +.+++ ..|+=..+..++.++++
T Consensus 336 se~FW~EN~~kf~~~~~~llk~L~~iL~~s--~d~~~laVAc~Dige~vr~~P-~g-r~i~~-~lg~K~~vM~Lm~h~d~ 410 (429)
T cd00256 336 SEKFWRENADRLNEKNYELLKILIHLLETS--VDPIILAVACHDIGEYVRHYP-RG-KDVVE-QLGGKQRVMRLLNHEDP 410 (429)
T ss_pred CchHHHHHHHHHHhcchHHHHHHHHHHhcC--CCcceeehhhhhHHHHHHHCc-cH-HHHHH-HcCcHHHHHHHhcCCCH
Confidence 12356666665554 78899999643 356666667777788887664 33 34444 38998999999999999
Q ss_pred HHHHHHHHHHHHH
Q 021242 282 KGKTKAVALLKIL 294 (315)
Q Consensus 282 ~~k~~A~~~L~~l 294 (315)
+||..|-.+++.+
T Consensus 411 ~Vr~eAL~avQkl 423 (429)
T cd00256 411 NVRYEALLAVQKL 423 (429)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988766
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.4e-09 Score=93.71 Aligned_cols=97 Identities=9% Similarity=-0.003 Sum_probs=77.6
Q ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhh
Q 021242 49 SIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPI 128 (315)
Q Consensus 49 ~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~ 128 (315)
.++.|..+|.+.+..++..|+.+|..+. ....++.+..++++ +++..+..++++|..|-..+..
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~---------~~~~~~~l~~ll~~----~d~~vR~~A~~aLg~lg~~~~~--- 87 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRG---------GQDVFRLAIELCSS----KNPIERDIGADILSQLGMAKRC--- 87 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcC---------cchHHHHHHHHHhC----CCHHHHHHHHHHHHhcCCCccc---
Confidence 4789999999999999999999997763 45577888888887 7889999999999998654332
Q ss_pred hhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhcc
Q 021242 129 IGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL 165 (315)
Q Consensus 129 i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~ 165 (315)
. ...++.|..++.. +.++.++..|+.+|.+++.
T Consensus 88 --~-~~a~~~L~~l~~~-D~d~~VR~~A~~aLG~~~~ 120 (280)
T PRK09687 88 --Q-DNVFNILNNLALE-DKSACVRASAINATGHRCK 120 (280)
T ss_pred --h-HHHHHHHHHHHhc-CCCHHHHHHHHHHHhcccc
Confidence 1 2347888887443 4578899999999999875
|
|
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.1e-10 Score=99.63 Aligned_cols=256 Identities=17% Similarity=0.129 Sum_probs=170.3
Q ss_pred HHHHHHHhccCchhhHHHHhC---CCHHHHHHHHcC--CCHHHHHHHHHHHHhcCcccc--hhhhhh------cCchHHH
Q 021242 27 LAELRLLSKHDAEIRPMISEA---GSIPYLAEILYS--SSHAFQENAAATLLNLSITSR--DSLMST------RGLLDAI 93 (315)
Q Consensus 27 ~~~L~~l~~~~~~~~~~i~~~---g~i~~Lv~lL~~--~~~~~~~~a~~~L~~la~~~~--~~~i~~------~~~i~~L 93 (315)
+..+..+-+..++.|..+.+. +....++.+|+. .++++.++.+..+..+..+++ ...+.. .....++
T Consensus 31 ~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~f 110 (312)
T PF03224_consen 31 LSLIKKLDKQSKEERRELLEEDGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPF 110 (312)
T ss_dssp HHHHHHHHHHHH-------------------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHH
Confidence 444555544444455555552 347777788865 467889999999988777654 233221 2257788
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccC--CChHHHHHHHHHHHHhccCCCcHH
Q 021242 94 SHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRN--SPLRSVKDALKALFGIALYPLNRY 171 (315)
Q Consensus 94 ~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~--~~~~~~~~a~~aL~~Ls~~~~~~~ 171 (315)
++++.+ ++..++..++..|..|....+....-.. .++++.+++++.+.. .+...+..|+.+|.+|...++.|.
T Consensus 111 l~ll~~----~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~ 185 (312)
T PF03224_consen 111 LKLLDR----NDSFIQLKAAFILTSLLSQGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQ 185 (312)
T ss_dssp HHH-S-----SSHHHHHHHHHHHHHHHTSTTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHH
T ss_pred HHHhcC----CCHHHHHHHHHHHHHHHHcCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHH
Confidence 887776 6778888999999999876655443322 355899999887421 123456889999999999999999
Q ss_pred HHHhhCCcHHHHHHH------hcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHH
Q 021242 172 QVIALGGVQPLFSLV------VNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSA 245 (315)
Q Consensus 172 ~i~~~g~v~~L~~lL------~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~ 245 (315)
.+.+.|+++.+.+++ ....+..++..++-+++.|+..++..+.+.+.+.|+.|+++++.. ..+++-.-++.+
T Consensus 186 ~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~--~KEKvvRv~la~ 263 (312)
T PF03224_consen 186 VFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDS--IKEKVVRVSLAI 263 (312)
T ss_dssp HHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH----SHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhc--ccchHHHHHHHH
Confidence 999999999999999 222344667789999999999999999998888899999999974 367888889999
Q ss_pred HHHHhccCCHHHHHHHHHHccCcHHHHHHHHhh--CCHHHHHHHHHHH
Q 021242 246 LLNLVNFGGERAAEEVKEMAMQVADGIADVAQN--GSAKGKTKAVALL 291 (315)
Q Consensus 246 L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~--~~~~~k~~A~~~L 291 (315)
|.|+.....+.....|+. .|+++.+..+... +|++..+.-..+-
T Consensus 264 l~Nl~~~~~~~~~~~mv~--~~~l~~l~~L~~rk~~Dedl~edl~~L~ 309 (312)
T PF03224_consen 264 LRNLLSKAPKSNIELMVL--CGLLKTLQNLSERKWSDEDLTEDLEFLK 309 (312)
T ss_dssp HHHTTSSSSTTHHHHHHH--H-HHHHHHHHHSS--SSHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHH--ccHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 999987655447788887 7777777777665 5888887666543
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.9e-09 Score=96.98 Aligned_cols=267 Identities=15% Similarity=0.153 Sum_probs=199.0
Q ss_pred hHHHHHHHhCCC---CHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchh-
Q 021242 7 TVRSLVTKLGSV---SEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDS- 82 (315)
Q Consensus 7 ~i~~Lv~~L~~~---~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~- 82 (315)
.+.++...++-- .++....|+..|.+++.+ ...-..++...++..||+.|...+.++.......|..|+.-.+++
T Consensus 261 e~dr~~kklk~~~~KQeqLLrva~ylLlNlAed-~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~ 339 (791)
T KOG1222|consen 261 EIDRLNKKLKTAIRKQEQLLRVAVYLLLNLAED-ISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKI 339 (791)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchH
Confidence 344444444421 235667788888999865 556678888999999999999988899999999999999887655
Q ss_pred hhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHH
Q 021242 83 LMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFG 162 (315)
Q Consensus 83 ~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~ 162 (315)
.+.+.|.++.|++++.. .+++.+......|+||+.....+..+.. +|++|.|+.++.+ + .-...|+..|+.
T Consensus 340 ~M~~~~iveKL~klfp~----~h~dL~~~tl~LlfNlSFD~glr~KMv~-~GllP~l~~ll~~--d--~~~~iA~~~lYh 410 (791)
T KOG1222|consen 340 VMEQNGIVEKLLKLFPI----QHPDLRKATLMLLFNLSFDSGLRPKMVN-GGLLPHLASLLDS--D--TKHGIALNMLYH 410 (791)
T ss_pred HHHhccHHHHHHHhcCC----CCHHHHHHHHHHhhhccccccccHHHhh-ccchHHHHHHhCC--c--ccchhhhhhhhh
Confidence 57799999999999997 7899999999999999999888888887 6889999999983 2 233558999999
Q ss_pred hccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHh-hcCCCCChhHHHH
Q 021242 163 IALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLL-DLGTGSGHRVKEN 241 (315)
Q Consensus 163 Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll-~~~~~~~~~~~~~ 241 (315)
+|.+++.+..+....+++.+.+.+.+..+..+.-...+.--|||-...+.+-+++..|+..|.+.- +.. +. -
T Consensus 411 ~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~---D~----l 483 (791)
T KOG1222|consen 411 LSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSR---DL----L 483 (791)
T ss_pred hccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhccc---ch----H
Confidence 999999888888889999999888755455554444444458888888888888766888877743 322 11 2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhC-CHHHHHHHHHHHHHHh
Q 021242 242 AVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNG-SAKGKTKAVALLKILV 295 (315)
Q Consensus 242 a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~-~~~~k~~A~~~L~~l~ 295 (315)
-...+.|++.+++. ..-..+ .-+..|..++..+ ++..--.+-.+|.+|.
T Consensus 484 LmK~vRniSqHeg~-tqn~Fi----dyvgdLa~i~~nd~~E~F~~EClGtlanL~ 533 (791)
T KOG1222|consen 484 LMKVVRNISQHEGA-TQNMFI----DYVGDLAGIAKNDNSESFGLECLGTLANLK 533 (791)
T ss_pred HHHHHHHhhhccch-HHHHHH----HHHHHHHHHhhcCchHHHHHHHHHHHhhcc
Confidence 34668888887653 222333 3667777777775 5555555666665554
|
|
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.7e-10 Score=101.18 Aligned_cols=223 Identities=16% Similarity=0.144 Sum_probs=157.4
Q ss_pred hHHHHHHHhC--CCCHHHHHHHHHHHHHHhccCchhhHHHHh------CCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcc
Q 021242 7 TVRSLVTKLG--SVSEQTRAEALAELRLLSKHDAEIRPMISE------AGSIPYLAEILYSSSHAFQENAAATLLNLSIT 78 (315)
Q Consensus 7 ~i~~Lv~~L~--~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~------~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~ 78 (315)
+...++.+|+ ++++++....+..+..+...++...+.+.+ .....++++++.++|.-++..|+.+|..+...
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence 3444444443 467899999999999999887766666655 12688999999989999999999999888766
Q ss_pred cc-hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHh-----hccCCChHH
Q 021242 79 SR-DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEII-----KTRNSPLRS 152 (315)
Q Consensus 79 ~~-~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll-----~~~~~~~~~ 152 (315)
.+ +......+.++.+++++++...+++.+.+..++.+|.+|...++.|..+.+.+| ++.|+.++ .+...+.+.
T Consensus 136 ~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~-v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 136 GPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNG-VSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp TTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHH-HHHHHHHHH---------HHHH
T ss_pred CCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCc-HHHHHHHHHhhcccCCCCchhH
Confidence 54 221112557788998887532112334557899999999999999999988666 99999999 222345678
Q ss_pred HHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChh--hHHHHHhcCCHHHHHHHhhc
Q 021242 153 VKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEE--SVDEFKKCCGIGVLVDLLDL 230 (315)
Q Consensus 153 ~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~--~~~~i~~~~~i~~Lv~ll~~ 230 (315)
+-+++-++|-|+.+++....+...+.++.|+++++....+.+..-++++++||...+. ....++..+ ++.++..|..
T Consensus 215 ~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~-~l~~l~~L~~ 293 (312)
T PF03224_consen 215 QYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCG-LLKTLQNLSE 293 (312)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH--HHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHcc-HHHHHHHHhc
Confidence 8899999999999999999999999999999999865666788889999999987654 777777644 5666776664
Q ss_pred C
Q 021242 231 G 231 (315)
Q Consensus 231 ~ 231 (315)
.
T Consensus 294 r 294 (312)
T PF03224_consen 294 R 294 (312)
T ss_dssp S
T ss_pred C
Confidence 3
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.4e-08 Score=97.82 Aligned_cols=226 Identities=17% Similarity=0.116 Sum_probs=136.6
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhh
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLM 84 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i 84 (315)
...++.|++.|+++++.+|..|+..|..+.. .++++.|+..|+++++.++..|+.+|..+...
T Consensus 620 ~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~------ 682 (897)
T PRK13800 620 APSVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEV------ 682 (897)
T ss_pred chhHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc------
Confidence 4567899999999999999999999998742 34689999999999999999999999776321
Q ss_pred hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhc
Q 021242 85 STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIA 164 (315)
Q Consensus 85 ~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls 164 (315)
....+.|...|++ +++.++..++.+|..+.. +. ...|+..|. +.++.++..|+++|..+.
T Consensus 683 --~~~~~~L~~~L~~----~d~~VR~~A~~aL~~~~~-----------~~-~~~l~~~L~--D~d~~VR~~Av~aL~~~~ 742 (897)
T PRK13800 683 --LPPAPALRDHLGS----PDPVVRAAALDVLRALRA-----------GD-AALFAAALG--DPDHRVRIEAVRALVSVD 742 (897)
T ss_pred --cCchHHHHHHhcC----CCHHHHHHHHHHHHhhcc-----------CC-HHHHHHHhc--CCCHHHHHHHHHHHhccc
Confidence 1123455566665 566677666666665421 11 234455555 345566666666665431
Q ss_pred cC-----------CCcHHHHH---------hhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHH
Q 021242 165 LY-----------PLNRYQVI---------ALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVL 224 (315)
Q Consensus 165 ~~-----------~~~~~~i~---------~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~L 224 (315)
.. ++.|.... ....++.|..++. ++++.++..|+..|..+...+ ..+..+
T Consensus 743 ~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~-D~d~~VR~aA~~aLg~~g~~~---------~~~~~l 812 (897)
T PRK13800 743 DVESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTG-DPDPLVRAAALAALAELGCPP---------DDVAAA 812 (897)
T ss_pred CcHHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhc-CCCHHHHHHHHHHHHhcCCcc---------hhHHHH
Confidence 10 00111000 0112455555553 445555555555555542210 012345
Q ss_pred HHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 021242 225 VDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKIL 294 (315)
Q Consensus 225 v~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l 294 (315)
+..+.+. +..++..|+.+|..+.. ...++.|..+++++++.||..|...|..+
T Consensus 813 ~~aL~d~---d~~VR~~Aa~aL~~l~~--------------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 813 TAALRAS---AWQVRQGAARALAGAAA--------------DVAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred HHHhcCC---ChHHHHHHHHHHHhccc--------------cchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 5555543 56666666666655421 12346777888888899999999888776
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.3e-07 Score=83.95 Aligned_cols=186 Identities=16% Similarity=0.123 Sum_probs=146.2
Q ss_pred CCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccch--hhhhhcCchHHH
Q 021242 16 GSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRD--SLMSTRGLLDAI 93 (315)
Q Consensus 16 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~--~~i~~~~~i~~L 93 (315)
++.+++.+..|+.-|..++.+ -+|-..+...|++++++.++++.+..+|+.|+++|..++.++++ ..+.+.|+.+.|
T Consensus 93 ~s~~le~ke~ald~Le~lve~-iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVED-IDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL 171 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHh-hhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence 456789999999999999954 78999999999999999999999999999999999999998762 345688999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHhhc-CCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCC-CcHH
Q 021242 94 SHVLRHHSTSTSSAAVQSSAATLHSLLV-VDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYP-LNRY 171 (315)
Q Consensus 94 ~~lL~~~~~~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~-~~~~ 171 (315)
+..+.+ +++...+..|..+++.|-. +......+...+| ...|..++++.+.+...+..++-.+..|.... ..+.
T Consensus 172 l~~ls~---~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G-~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d 247 (342)
T KOG2160|consen 172 LKILSS---DDPNTVRTKALFAISSLIRNNKPGQDEFLKLNG-YQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDED 247 (342)
T ss_pred HHHHcc---CCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCC-HHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhh
Confidence 999986 3566777889999999996 5566667776678 89999999954367788889999999998844 3444
Q ss_pred HHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc
Q 021242 172 QVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG 207 (315)
Q Consensus 172 ~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~ 207 (315)
.+-..|....+..+.. ..+.++.+.++..+..+..
T Consensus 248 ~~~~~~f~~~~~~l~~-~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 248 IASSLGFQRVLENLIS-SLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHHHhhhhHHHHHHhh-ccchhhhHHHHHHHHHHHH
Confidence 3334566666666664 4456677776665554433
|
|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.6e-07 Score=86.51 Aligned_cols=281 Identities=16% Similarity=0.184 Sum_probs=202.3
Q ss_pred hhhHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcC--CCHHHHHHHHHHHHhcCcccc-
Q 021242 5 RRTVRSLVTKLGSV-SEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYS--SSHAFQENAAATLLNLSITSR- 80 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~~la~~~~- 80 (315)
-.+|+.|+..+.++ -++-|+.|+..|..+++ .+|..+...| +++|+..|.. .|++...+++.++.++..+++
T Consensus 21 aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~ 96 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS 96 (970)
T ss_pred HhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence 35799999999876 47999999999999985 4777766665 9999999975 578999999999999887652
Q ss_pred -------h----------h-hhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcC--CCchhhhhhccccHHHHH
Q 021242 81 -------D----------S-LMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVV--DSYRPIIGAKRDIIHSLI 140 (315)
Q Consensus 81 -------~----------~-~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~--~~~~~~i~~~~g~i~~Lv 140 (315)
+ . .+...+.|..|+.++.. -+.-+|..+...|.+|... .+.+..+....-.|..|+
T Consensus 97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~----~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lm 172 (970)
T KOG0946|consen 97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEE----FDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLM 172 (970)
T ss_pred hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHh----hchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHH
Confidence 1 1 23468889999999986 4567788888888888753 345666666554499999
Q ss_pred HHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHh-hCCcHHHHHHHhcCC--Cc-chHHHHHHHHHHHhcC-hhhHHHH
Q 021242 141 EIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIA-LGGVQPLFSLVVNGG--RA-GIVEDASAVIAQIAGC-EESVDEF 215 (315)
Q Consensus 141 ~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~-~g~v~~L~~lL~~~~--~~-~~~~~a~~~L~~L~~~-~~~~~~i 215 (315)
.+|. +.-..++-.|+-.|..|..+.....+++- .++...|+.++...+ +- -+.+.|+.+|-||-.. ..+..-|
T Consensus 173 dlL~--DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~F 250 (970)
T KOG0946|consen 173 DLLR--DSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFF 250 (970)
T ss_pred HHHh--hhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHH
Confidence 9998 33556777899999999997777666654 799999999997543 22 4678899999999885 5566666
Q ss_pred HhcCCHHHHHHHhhcC---C-CCChhHH------HHHHHHHHHHhccCCH-----HHHHHHHHHccCcHHHHHHHHhhC-
Q 021242 216 KKCCGIGVLVDLLDLG---T-GSGHRVK------ENAVSALLNLVNFGGE-----RAAEEVKEMAMQVADGIADVAQNG- 279 (315)
Q Consensus 216 ~~~~~i~~Lv~ll~~~---~-~~~~~~~------~~a~~~L~~l~~~~~~-----~~~~~i~~~~~g~~~~L~~ll~~~- 279 (315)
.+.+.||+|.++|... + ....+.. -.++.++..+...+.. .+.+.|.+ .+++..|+.++-+.
T Consensus 251 rE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~s--s~ll~~Lc~il~~~~ 328 (970)
T KOG0946|consen 251 REGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVS--SHLLDVLCTILMHPG 328 (970)
T ss_pred hccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH--cchHHHHHHHHcCCC
Confidence 6666799999888642 1 1111211 1234444444433322 12245666 89999999877664
Q ss_pred -CHHHHHHHHHHHHHHhhC
Q 021242 280 -SAKGKTKAVALLKILVDD 297 (315)
Q Consensus 280 -~~~~k~~A~~~L~~l~~~ 297 (315)
...++..+.-......++
T Consensus 329 vp~dIltesiitvAevVRg 347 (970)
T KOG0946|consen 329 VPADILTESIITVAEVVRG 347 (970)
T ss_pred CcHhHHHHHHHHHHHHHHh
Confidence 457777777666666543
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.3e-07 Score=93.04 Aligned_cols=227 Identities=18% Similarity=0.127 Sum_probs=148.0
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCccc-----
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITS----- 79 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~----- 79 (315)
+..++.|++.|+++++.+|..|+.+|..+....+ ..+.|...|++.++.+|..|+.+|..+...+
T Consensus 651 ~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~----------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~ 720 (897)
T PRK13800 651 PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP----------PAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFA 720 (897)
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC----------chHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHH
Confidence 4568899999999999999999999988753211 1245555565566666666665554432110
Q ss_pred ------c---h----hhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhcc
Q 021242 80 ------R---D----SLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTR 146 (315)
Q Consensus 80 ------~---~----~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~ 146 (315)
+ + ..+..-+..+.|..++.+ ++++++..++.+|..+... . ...++.|..++.
T Consensus 721 ~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D----~~~~VR~~aa~aL~~~~~~--------~-~~~~~~L~~ll~-- 785 (897)
T PRK13800 721 AALGDPDHRVRIEAVRALVSVDDVESVAGAATD----ENREVRIAVAKGLATLGAG--------G-APAGDAVRALTG-- 785 (897)
T ss_pred HHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcC----CCHHHHHHHHHHHHHhccc--------c-chhHHHHHHHhc--
Confidence 0 0 000011223445555554 5566666666666654321 1 122678888888
Q ss_pred CCChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHH
Q 021242 147 NSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVD 226 (315)
Q Consensus 147 ~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ 226 (315)
+.++.++..|+.+|.++...+ .++..++..|. +++..++..|+..|..+.. ...++.|+.
T Consensus 786 D~d~~VR~aA~~aLg~~g~~~---------~~~~~l~~aL~-d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~ 845 (897)
T PRK13800 786 DPDPLVRAAALAALAELGCPP---------DDVAAATAALR-ASAWQVRQGAARALAGAAA----------DVAVPALVE 845 (897)
T ss_pred CCCHHHHHHHHHHHHhcCCcc---------hhHHHHHHHhc-CCChHHHHHHHHHHHhccc----------cchHHHHHH
Confidence 457889899999998864321 11245777785 5677788888888876531 234688999
Q ss_pred HhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHH
Q 021242 227 LLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLK 292 (315)
Q Consensus 227 ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~ 292 (315)
+|.+. +..++..|+.+|..+. ..+. ..+.|...++++++.||+.|...|+
T Consensus 846 ~L~D~---~~~VR~~A~~aL~~~~--~~~~-----------a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 846 ALTDP---HLDVRKAAVLALTRWP--GDPA-----------ARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HhcCC---CHHHHHHHHHHHhccC--CCHH-----------HHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 99875 8999999999998862 2222 2345557888999999999999885
|
|
| >KOG2973 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.8e-07 Score=79.10 Aligned_cols=272 Identities=14% Similarity=0.113 Sum_probs=177.5
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHH-hCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc-hhhhh
Q 021242 8 VRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMIS-EAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR-DSLMS 85 (315)
Q Consensus 8 i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~-~~~i~ 85 (315)
...+|++|++.+|.+|..|+..+..+... ..+.... +.-.|+.+.+++....+ -+.|+.+|.|++.+.. ++.+.
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll 80 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLL 80 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHH
Confidence 45789999999999999999999999866 2232222 24568889999987666 6788999999998875 44333
Q ss_pred hcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhh-hhc-----cccHHHHHHHhhccCCCh-HHHHHHHH
Q 021242 86 TRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPII-GAK-----RDIIHSLIEIIKTRNSPL-RSVKDALK 158 (315)
Q Consensus 86 ~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i-~~~-----~g~i~~Lv~ll~~~~~~~-~~~~~a~~ 158 (315)
+. .+..+++.+.++ .+ ..-...|..|.||+..+.....+ ... .|++........++ .+. .-..+-+-
T Consensus 81 ~~-~~k~l~~~~~~p---~~-~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~-~n~~a~f~ylA~ 154 (353)
T KOG2973|consen 81 QD-LLKVLMDMLTDP---QS-PLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKS-YNAYAEFHYLAP 154 (353)
T ss_pred HH-HHHHHHHHhcCc---cc-chHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcc-cccccchhHHHH
Confidence 43 888888888763 22 34456778999999876543322 211 36334444444421 221 23456778
Q ss_pred HHHHhccCCCcHHHHHhhCCcHH-HHHHHhcCCCcchH-HHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHh--------
Q 021242 159 ALFGIALYPLNRYQVIALGGVQP-LFSLVVNGGRAGIV-EDASAVIAQIAGCEESVDEFKKCCGIGVLVDLL-------- 228 (315)
Q Consensus 159 aL~~Ls~~~~~~~~i~~~g~v~~-L~~lL~~~~~~~~~-~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll-------- 228 (315)
.+.||++.+..|..+.....++. -+.-+.+ ++..++ ....++|.|+|........+.. ..+..+..+|
T Consensus 155 vf~nls~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~~lL~-e~~~lLp~iLlPlagpee 232 (353)
T KOG2973|consen 155 VFANLSQFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHEVLLD-ESINLLPAILLPLAGPEE 232 (353)
T ss_pred HHHHHhhhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHHHHhc-chHHHHHHHHhhcCCccc
Confidence 89999999999988876553321 1111222 233443 4588999999998888777776 3333333222
Q ss_pred ----------------hcC-C-CCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhh--CCHHHHHHHH
Q 021242 229 ----------------DLG-T-GSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQN--GSAKGKTKAV 288 (315)
Q Consensus 229 ----------------~~~-~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~--~~~~~k~~A~ 288 (315)
-.+ . ..++.++..-+.+|..||.... . ++.++ .-+++.+++.+.. +++.+++.+-
T Consensus 233 ~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~--G-Re~lR--~kgvYpilRElhk~e~ded~~~ace 307 (353)
T KOG2973|consen 233 LSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRA--G-REVLR--SKGVYPILRELHKWEEDEDIREACE 307 (353)
T ss_pred cCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhH--h-HHHHH--hcCchHHHHHHhcCCCcHHHHHHHH
Confidence 100 0 2367788889999999987432 2 45665 4444445554444 5899999998
Q ss_pred HHHHHHhh
Q 021242 289 ALLKILVD 296 (315)
Q Consensus 289 ~~L~~l~~ 296 (315)
.+-+.+-+
T Consensus 308 ~vvq~Lv~ 315 (353)
T KOG2973|consen 308 QVVQMLVR 315 (353)
T ss_pred HHHHHHHh
Confidence 88888765
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.6e-07 Score=88.33 Aligned_cols=253 Identities=15% Similarity=0.201 Sum_probs=163.1
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhh-h
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSL-M 84 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~-i 84 (315)
.-++.+.+.|.+++|.+|.+|+.++..+.+.+++ .+... .++.+.++|.+.++.++..|+.++..+ ..+++.. -
T Consensus 114 ~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~---~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~ 188 (526)
T PF01602_consen 114 PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD---LVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKS 188 (526)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC---CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTT
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH---HHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhh
Confidence 3456677777888888888888888888766554 22223 588888888888888888888888888 2222111 1
Q ss_pred hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhc
Q 021242 85 STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIA 164 (315)
Q Consensus 85 ~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls 164 (315)
.-+..++.|.+++.. .++-.+.....+|..++........- ..+++.+..+++ +.++.+...|.+++..+.
T Consensus 189 ~~~~~~~~L~~~l~~----~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~--s~~~~V~~e~~~~i~~l~ 259 (526)
T PF01602_consen 189 LIPKLIRILCQLLSD----PDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQ--SSSPSVVYEAIRLIIKLS 259 (526)
T ss_dssp HHHHHHHHHHHHHTC----CSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHhhhcccc----cchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhh--ccccHHHHHHHHHHHHhh
Confidence 122234444444444 56677777777777665433221100 245788888888 347788889999999877
Q ss_pred cCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHH
Q 021242 165 LYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVS 244 (315)
Q Consensus 165 ~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~ 244 (315)
..+. .-..+++.|.+++. +++..++..++..|..++... ...+ . .....+..+... ++..++..++.
T Consensus 260 ~~~~-----~~~~~~~~L~~lL~-s~~~nvr~~~L~~L~~l~~~~--~~~v-~--~~~~~~~~l~~~--~d~~Ir~~~l~ 326 (526)
T PF01602_consen 260 PSPE-----LLQKAINPLIKLLS-SSDPNVRYIALDSLSQLAQSN--PPAV-F--NQSLILFFLLYD--DDPSIRKKALD 326 (526)
T ss_dssp SSHH-----HHHHHHHHHHHHHT-SSSHHHHHHHHHHHHHHCCHC--HHHH-G--THHHHHHHHHCS--SSHHHHHHHHH
T ss_pred cchH-----HHHhhHHHHHHHhh-cccchhehhHHHHHHHhhccc--chhh-h--hhhhhhheecCC--CChhHHHHHHH
Confidence 6554 34577889999996 567778988999999997743 2222 2 233334455532 37889999999
Q ss_pred HHHHHhccCCHHHHHHHHHHccCcHHHHHHHHh-hCCHHHHHHHHHHHHHHh
Q 021242 245 ALLNLVNFGGERAAEEVKEMAMQVADGIADVAQ-NGSAKGKTKAVALLKILV 295 (315)
Q Consensus 245 ~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~-~~~~~~k~~A~~~L~~l~ 295 (315)
+|..++.. ..... +++.|...+. .+++.+++.+...+..+.
T Consensus 327 lL~~l~~~---~n~~~-------Il~eL~~~l~~~~d~~~~~~~i~~I~~la 368 (526)
T PF01602_consen 327 LLYKLANE---SNVKE-------ILDELLKYLSELSDPDFRRELIKAIGDLA 368 (526)
T ss_dssp HHHHH--H---HHHHH-------HHHHHHHHHHHC--HHHHHHHHHHHHHHH
T ss_pred HHhhcccc---cchhh-------HHHHHHHHHHhccchhhhhhHHHHHHHHH
Confidence 99999752 33233 3456666664 457778888877666554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.3e-07 Score=91.45 Aligned_cols=155 Identities=12% Similarity=0.101 Sum_probs=130.5
Q ss_pred cccHHHHHHHhhccCCChHHHHHHHHHHHHhcc-CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhh
Q 021242 133 RDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL-YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEES 211 (315)
Q Consensus 133 ~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~ 211 (315)
.-++|.|+.+|+. ..++++...|+|+|.+|+- .|+....+|+.++||.|++-|..-....+.|.++.+|..+++.+
T Consensus 210 ~slvp~Lv~LL~~-E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H-- 286 (1051)
T KOG0168|consen 210 KSLVPVLVALLSH-EHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH-- 286 (1051)
T ss_pred HHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--
Confidence 3579999999986 3578999999999999998 78999999999999999988864356678899999999998732
Q ss_pred HHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHH
Q 021242 212 VDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALL 291 (315)
Q Consensus 212 ~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L 291 (315)
-+++.++|++...+.++..- +..+|..|+.+..|+|+.-.++.-..+.+ ++|.|..+++..+.+..+.++-.+
T Consensus 287 ~~AiL~AG~l~a~LsylDFF---Si~aQR~AlaiaaN~Cksi~sd~f~~v~e----alPlL~~lLs~~D~k~ies~~ic~ 359 (1051)
T KOG0168|consen 287 PKAILQAGALSAVLSYLDFF---SIHAQRVALAIAANCCKSIRSDEFHFVME----ALPLLTPLLSYQDKKPIESVCICL 359 (1051)
T ss_pred cHHHHhcccHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCCCccchHHHH----HHHHHHHHHhhccchhHHHHHHHH
Confidence 25788999999999999875 88999999999999998654444466755 999999999999888888888877
Q ss_pred HHHhhC
Q 021242 292 KILVDD 297 (315)
Q Consensus 292 ~~l~~~ 297 (315)
..+.+.
T Consensus 360 ~ri~d~ 365 (1051)
T KOG0168|consen 360 TRIADG 365 (1051)
T ss_pred HHHHHh
Confidence 776653
|
|
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.1e-06 Score=81.53 Aligned_cols=222 Identities=13% Similarity=0.161 Sum_probs=163.0
Q ss_pred hhhHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCchhhHHHHhC-----CCHHHHHHHHcCCCHHHHHHHHHHHHhcCcc
Q 021242 5 RRTVRSLVTKLGSV-SEQTRAEALAELRLLSKHDAEIRPMISEA-----GSIPYLAEILYSSSHAFQENAAATLLNLSIT 78 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-----g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~ 78 (315)
..++..++.+|+.. .+++....+..+..+...++..-..+.+. ....+++++|..+|.-++..|+.+|..+...
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACF 131 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhc
Confidence 46777888888754 56888888999999988776555566654 5788899999888888899999999777654
Q ss_pred cchh--hhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHH
Q 021242 79 SRDS--LMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDA 156 (315)
Q Consensus 79 ~~~~--~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a 156 (315)
.... -....-..+-|...++++ .+.+.+..++.+|..|...++.|..+.+.+| ++.|+++|+....+.+.+-++
T Consensus 132 ~~~~~~~~~l~~~~~~l~~~l~~~---~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~-v~~L~~~L~~~~~~~Ql~Y~~ 207 (429)
T cd00256 132 GLAKMEGSDLDYYFNWLKEQLNNI---TNNDYVQTAARCLQMLLRVDEYRFAFVLADG-VPTLVKLLSNATLGFQLQYQS 207 (429)
T ss_pred CccccchhHHHHHHHHHHHHhhcc---CCcchHHHHHHHHHHHhCCchHHHHHHHccC-HHHHHHHHhhccccHHHHHHH
Confidence 3211 110111333445555541 2456677888999999999999999987766 899999998532356888899
Q ss_pred HHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcCh-------hhHHHHHhcCCHHHHHHHhh
Q 021242 157 LKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCE-------ESVDEFKKCCGIGVLVDLLD 229 (315)
Q Consensus 157 ~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~-------~~~~~i~~~~~i~~Lv~ll~ 229 (315)
+-++|-|+.+++....+.+.+.++.+++++...+-+.+..-++.+|.||...+ .....+++. +++.++..|+
T Consensus 208 ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~-~l~~~l~~L~ 286 (429)
T cd00256 208 IFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQC-KVLKTLQSLE 286 (429)
T ss_pred HHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHc-ChHHHHHHHh
Confidence 99999999998877777778999999999975555678888999999997743 122334433 5677788776
Q ss_pred cC
Q 021242 230 LG 231 (315)
Q Consensus 230 ~~ 231 (315)
..
T Consensus 287 ~r 288 (429)
T cd00256 287 QR 288 (429)
T ss_pred cC
Confidence 54
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.9e-06 Score=77.81 Aligned_cols=279 Identities=14% Similarity=0.093 Sum_probs=184.2
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHh-CCCHHHHHHHHcC-CCHHHHHHHHHHHHhcCcccc-hh
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISE-AGSIPYLAEILYS-SSHAFQENAAATLLNLSITSR-DS 82 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~la~~~~-~~ 82 (315)
-.-++.+.+|...+.-+...+.+.|+.++......- ...+ .=....|-..+.+ .+++....|+++|.-+...++ +-
T Consensus 114 ~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~-~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~ 192 (442)
T KOG2759|consen 114 TEWLSFLNLLNRQDTFIVEMSFRILSKLACFGNCKM-ELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRY 192 (442)
T ss_pred cchHHHHHHHhcCChHHHHHHHHHHHHHHHhccccc-cchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhh
Confidence 334566777777777777668888888876543211 1111 0112223333444 566778889999999988887 44
Q ss_pred hhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHH
Q 021242 83 LMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFG 162 (315)
Q Consensus 83 ~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~ 162 (315)
.+...+|+..++..+.+. -.+.+++-..+.++|-|+.++.....+.. .+.|+.|.++++.+ ...++.+.++.++.|
T Consensus 193 ~~v~adg~~~l~~~l~s~--~~~~QlQYqsifciWlLtFn~~~ae~~~~-~~li~~L~~Ivk~~-~KEKV~Rivlai~~N 268 (442)
T KOG2759|consen 193 AFVIADGVSLLIRILAST--KCGFQLQYQSIFCIWLLTFNPHAAEKLKR-FDLIQDLSDIVKES-TKEKVTRIVLAIFRN 268 (442)
T ss_pred eeeecCcchhhHHHHhcc--CcchhHHHHHHHHHHHhhcCHHHHHHHhh-ccHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 445788999999998532 25678888999999999998887777744 57799999999963 567888999999999
Q ss_pred hccCCC-------cHHHHHhhCCcHHHHHHHhcC-CCcchHHH-------HHHHHHHHhc--------------------
Q 021242 163 IALYPL-------NRYQVIALGGVQPLFSLVVNG-GRAGIVED-------ASAVIAQIAG-------------------- 207 (315)
Q Consensus 163 Ls~~~~-------~~~~i~~~g~v~~L~~lL~~~-~~~~~~~~-------a~~~L~~L~~-------------------- 207 (315)
+....+ ....|+..++.+.+--+..+. .++.+.+. .-.....||+
T Consensus 269 ll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk 348 (442)
T KOG2759|consen 269 LLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHK 348 (442)
T ss_pred HhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCcccc
Confidence 998552 234556555555544443321 23444322 1122223432
Q ss_pred ----ChhhHHHHHhcC--CHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCH
Q 021242 208 ----CEESVDEFKKCC--GIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSA 281 (315)
Q Consensus 208 ----~~~~~~~i~~~~--~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~ 281 (315)
+.+|...+-+.. .+..|+++|+.. .++..---||-=+...-..++ +.+.-+.+ -||-+.+.+++.+++|
T Consensus 349 ~e~FW~eNa~rlnennyellkiL~~lLe~s--~Dp~iL~VAc~DIge~Vr~yP-~gk~vv~k--~ggKe~vM~Llnh~d~ 423 (442)
T KOG2759|consen 349 SEKFWRENADRLNENNYELLKILIKLLETS--NDPIILCVACHDIGEYVRHYP-EGKAVVEK--YGGKERVMNLLNHEDP 423 (442)
T ss_pred ccchHHHhHHHHhhccHHHHHHHHHHHhcC--CCCceeehhhhhHHHHHHhCc-hHhHHHHH--hchHHHHHHHhcCCCc
Confidence 234455554443 378899999874 345555555555666666554 44444444 8999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 021242 282 KGKTKAVALLKIL 294 (315)
Q Consensus 282 ~~k~~A~~~L~~l 294 (315)
+||-.|-.+.+.|
T Consensus 424 ~Vry~ALlavQ~l 436 (442)
T KOG2759|consen 424 EVRYHALLAVQKL 436 (442)
T ss_pred hHHHHHHHHHHHH
Confidence 9999999987765
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.1e-06 Score=78.13 Aligned_cols=186 Identities=17% Similarity=0.184 Sum_probs=146.8
Q ss_pred CCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhcc-CCCcHHHHHhhCCcHHH
Q 021242 104 TSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL-YPLNRYQVIALGGVQPL 182 (315)
Q Consensus 104 ~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~L 182 (315)
.+++-++.|..-|..+...=+|..-+...+| .++++..+. +.+..++..|+++|...++ +|.....+++.|+++.|
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~gg-l~~ll~~l~--~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGG-LVPLLGYLE--NSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL 171 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccC-HHHHHHHhc--CCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence 4677788888888888876666666777777 677777998 6789999999999999998 57788899999999999
Q ss_pred HHHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHH
Q 021242 183 FSLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEV 261 (315)
Q Consensus 183 ~~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i 261 (315)
+..+.++++..++.+|+.+++.|-. .+.+...|...+|...|...++.+ ..+...|..++-.+..+..... .. ..+
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~-~~~~~lkrK~~~Ll~~Ll~~~~-s~-~d~ 248 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSN-NTSVKLKRKALFLLSLLLQEDK-SD-EDI 248 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcC-CcchHHHHHHHHHHHHHHHhhh-hh-hhH
Confidence 9999765556778899999999977 578999999999999999999975 2477888889998998876432 22 234
Q ss_pred HHHccCcHHHHHHHHhhCCHHHHHHHHHH-HHHHhh
Q 021242 262 KEMAMQVADGIADVAQNGSAKGKTKAVAL-LKILVD 296 (315)
Q Consensus 262 ~~~~~g~~~~L~~ll~~~~~~~k~~A~~~-L~~l~~ 296 (315)
.. ..|..+.+..+....+..+++.|... |..++.
T Consensus 249 ~~-~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 249 AS-SLGFQRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred HH-HhhhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 44 26677777788888888888888774 444444
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.5e-07 Score=86.13 Aligned_cols=257 Identities=20% Similarity=0.236 Sum_probs=181.5
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhh
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMS 85 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~ 85 (315)
..++.+...|.++++.+|.-|+.+|.++.. ++.... .++.+.+++.++++-+|..|+.++..+....+.. +.
T Consensus 79 l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~--~~~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~-~~ 150 (526)
T PF01602_consen 79 LIINSLQKDLNSPNPYIRGLALRTLSNIRT--PEMAEP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL-VE 150 (526)
T ss_dssp HHHHHHHHHHCSSSHHHHHHHHHHHHHH-S--HHHHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC-HH
T ss_pred HHHHHHHHhhcCCCHHHHHHHHhhhhhhcc--cchhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH-HH
Confidence 467788899999999999999999999983 333222 4889999999999999999999998887654332 22
Q ss_pred hcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCC-chhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhc
Q 021242 86 TRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDS-YRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIA 164 (315)
Q Consensus 86 ~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls 164 (315)
.. .++.+.++|.+ .++.++..|+.++..+...++ ....+ ..++..|..++. ..++-.+..+++.|..++
T Consensus 151 ~~-~~~~l~~lL~d----~~~~V~~~a~~~l~~i~~~~~~~~~~~---~~~~~~L~~~l~--~~~~~~q~~il~~l~~~~ 220 (526)
T PF01602_consen 151 DE-LIPKLKQLLSD----KDPSVVSAALSLLSEIKCNDDSYKSLI---PKLIRILCQLLS--DPDPWLQIKILRLLRRYA 220 (526)
T ss_dssp GG-HHHHHHHHTTH----SSHHHHHHHHHHHHHHHCTHHHHTTHH---HHHHHHHHHHHT--CCSHHHHHHHHHHHTTST
T ss_pred HH-HHHHHhhhccC----CcchhHHHHHHHHHHHccCcchhhhhH---HHHHHHhhhccc--ccchHHHHHHHHHHHhcc
Confidence 22 68999999987 678899999999999811111 11111 233555566655 458888899999999888
Q ss_pred cCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHH
Q 021242 165 LYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVS 244 (315)
Q Consensus 165 ~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~ 244 (315)
........ ....++.+..++. +.+..+.-.+..++..+...+. .-..+++.|++++.+. ++.++..++.
T Consensus 221 ~~~~~~~~--~~~~i~~l~~~l~-s~~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s~---~~nvr~~~L~ 289 (526)
T PF01602_consen 221 PMEPEDAD--KNRIIEPLLNLLQ-SSSPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSSS---DPNVRYIALD 289 (526)
T ss_dssp SSSHHHHH--HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTSS---SHHHHHHHHH
T ss_pred cCChhhhh--HHHHHHHHHHHhh-ccccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhcc---cchhehhHHH
Confidence 64432221 0456778888886 4566778888888888877655 2234578899999864 7889999999
Q ss_pred HHHHHhccCCHHHHHHHHHHccCcHHHHHHHHh-hCCHHHHHHHHHHHHHHhhCCCC
Q 021242 245 ALLNLVNFGGERAAEEVKEMAMQVADGIADVAQ-NGSAKGKTKAVALLKILVDDGNM 300 (315)
Q Consensus 245 ~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~-~~~~~~k~~A~~~L~~l~~~~~~ 300 (315)
.|..++.... ..+ . ........+. ++++.+|..+..+|..+....|.
T Consensus 290 ~L~~l~~~~~-----~~v---~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~ 337 (526)
T PF01602_consen 290 SLSQLAQSNP-----PAV---F-NQSLILFFLLYDDDPSIRKKALDLLYKLANESNV 337 (526)
T ss_dssp HHHHHCCHCH-----HHH---G-THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHH
T ss_pred HHHHhhcccc-----hhh---h-hhhhhhheecCCCChhHHHHHHHHHhhcccccch
Confidence 9999987541 122 1 2222334555 78999999999999888765543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.1e-06 Score=85.11 Aligned_cols=215 Identities=15% Similarity=0.100 Sum_probs=162.5
Q ss_pred hhhHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcC-CCHHHHHHHHHHHHhcCcccchh
Q 021242 5 RRTVRSLVTKLGSV-SEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYS-SSHAFQENAAATLLNLSITSRDS 82 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~la~~~~~~ 82 (315)
+.-||.||.+|++. +++++..|+++|..++.--|.....+++.++||.|+.-|.. +..++-+.++.+|-.++....+.
T Consensus 210 ~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~A 289 (1051)
T KOG0168|consen 210 KSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKA 289 (1051)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHH
Confidence 45689999999864 78999999999999998888899999999999999887754 66789999999999998766666
Q ss_pred hhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc--CCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHH
Q 021242 83 LMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV--VDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKAL 160 (315)
Q Consensus 83 ~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~--~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL 160 (315)
++ ++|++...+.+|.-+ +.-++..|..+..|++. ..+.-..+++ . +|.|..+|+ ..+.+..+.++-++
T Consensus 290 iL-~AG~l~a~LsylDFF----Si~aQR~AlaiaaN~Cksi~sd~f~~v~e--a-lPlL~~lLs--~~D~k~ies~~ic~ 359 (1051)
T KOG0168|consen 290 IL-QAGALSAVLSYLDFF----SIHAQRVALAIAANCCKSIRSDEFHFVME--A-LPLLTPLLS--YQDKKPIESVCICL 359 (1051)
T ss_pred HH-hcccHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCCccchHHHH--H-HHHHHHHHh--hccchhHHHHHHHH
Confidence 65 999999999999863 45677888888899883 3343444443 3 899999999 45777878877777
Q ss_pred HHhcc----CCCcHHHHHhhCCcHHHHHHHhcCC---CcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhh
Q 021242 161 FGIAL----YPLNRYQVIALGGVQPLFSLVVNGG---RAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLD 229 (315)
Q Consensus 161 ~~Ls~----~~~~~~~i~~~g~v~~L~~lL~~~~---~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~ 229 (315)
..++. +++--.++...|.+....+++.-.+ +.++.-.....|.-+|+ ++..+......+....|..+|.
T Consensus 360 ~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~ 436 (1051)
T KOG0168|consen 360 TRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQ 436 (1051)
T ss_pred HHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHh
Confidence 77664 3444467888899999999995322 12333345666777766 4777777766665555555654
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.5e-06 Score=86.85 Aligned_cols=243 Identities=13% Similarity=0.102 Sum_probs=164.1
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHh-CCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhh--h
Q 021242 8 VRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISE-AGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSL--M 84 (315)
Q Consensus 8 i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~--i 84 (315)
++.+-.+|.|.++..|..|+.+|..++....+ ..... ..+++.++..|++++|.+|-+|+.+++.++.+-...+ -
T Consensus 350 ~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~--~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~ 427 (1075)
T KOG2171|consen 350 FEALEAMLQSTEWKERHAALLALSVIAEGCSD--VMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKK 427 (1075)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHcccHH--HHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHH
Confidence 45666778899999999999999999866433 22223 5678888888999999999999999999998854322 1
Q ss_pred hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhc
Q 021242 85 STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIA 164 (315)
Q Consensus 85 ~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls 164 (315)
..+-.++.|+..+.+ ..++.++..|+.++-|++........-..-.+++..++.+|.. ++++.+++.+..+|...+
T Consensus 428 ~~e~l~~aL~~~ld~---~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~-~~~~~v~e~vvtaIasvA 503 (1075)
T KOG2171|consen 428 HHERLPPALIALLDS---TQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQ-SSKPYVQEQAVTAIASVA 503 (1075)
T ss_pred HHHhccHHHHHHhcc---cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHH
Confidence 244567889999987 3778899999999999998776555555555666655655554 578899999999999988
Q ss_pred cCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc--ChhhHHHHHhcC--CHHHHHHHhhcCCCCChhHHH
Q 021242 165 LYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG--CEESVDEFKKCC--GIGVLVDLLDLGTGSGHRVKE 240 (315)
Q Consensus 165 ~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~--~~~~~~~i~~~~--~i~~Lv~ll~~~~~~~~~~~~ 240 (315)
..-+....=.-.-.+|.|..+|....+...++..-.++-.++. ..-|++.|.... .+..+..+-.+....+...+.
T Consensus 504 ~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~s 583 (1075)
T KOG2171|consen 504 DAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRS 583 (1075)
T ss_pred HHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHH
Confidence 6544443333346678888888633334444443333333322 234566665432 244444442111123566777
Q ss_pred HHHHHHHHHhccCCHH
Q 021242 241 NAVSALLNLVNFGGER 256 (315)
Q Consensus 241 ~a~~~L~~l~~~~~~~ 256 (315)
.......++|+...++
T Consensus 584 y~~~~warmc~ilg~~ 599 (1075)
T KOG2171|consen 584 YMIAFWARMCRILGDD 599 (1075)
T ss_pred HHHHHHHHHHHHhchh
Confidence 7778888888765544
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.64 E-value=9.5e-07 Score=83.62 Aligned_cols=287 Identities=13% Similarity=0.112 Sum_probs=183.8
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHH--HHh--CCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccch
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPM--ISE--AGSIPYLAEILYSSSHAFQENAAATLLNLSITSRD 81 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~--i~~--~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~ 81 (315)
..+|.|.++|.+++...+..|..+|..++.++.+.-+. .-+ +-.||.++++.++.++++|..|+.++-.+-.....
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~q 207 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQ 207 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcH
Confidence 45789999999999899999999999999876543222 111 34589999999999999999999988444333222
Q ss_pred hhh-hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHH
Q 021242 82 SLM-STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKAL 160 (315)
Q Consensus 82 ~~i-~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL 160 (315)
.++ .-...++.+..+-.+ .+++++.+.|.++..|..+...|-. -.-+++++.++...++ .+..+-..|+...
T Consensus 208 al~~~iD~Fle~lFalanD----~~~eVRk~vC~alv~Llevr~dkl~-phl~~IveyML~~tqd--~dE~VALEACEFw 280 (885)
T KOG2023|consen 208 ALYVHIDKFLEILFALAND----EDPEVRKNVCRALVFLLEVRPDKLV-PHLDNIVEYMLQRTQD--VDENVALEACEFW 280 (885)
T ss_pred HHHHHHHHHHHHHHHHccC----CCHHHHHHHHHHHHHHHHhcHHhcc-cchHHHHHHHHHHccC--cchhHHHHHHHHH
Confidence 222 112245555555544 7899999999999999976654432 2224678888888884 4677889999999
Q ss_pred HHhccCCCcHHHHHh--hCCcHHHHHHHh-cCCCc---------------------------------------------
Q 021242 161 FGIALYPLNRYQVIA--LGGVQPLFSLVV-NGGRA--------------------------------------------- 192 (315)
Q Consensus 161 ~~Ls~~~~~~~~i~~--~g~v~~L~~lL~-~~~~~--------------------------------------------- 192 (315)
..++..+-.+..+.. ...+|.|+.-+. ++.+.
T Consensus 281 la~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~ 360 (885)
T KOG2023|consen 281 LALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDED 360 (885)
T ss_pred HHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccc
Confidence 999988855544443 255665543221 00000
Q ss_pred ---------chHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcC-CCCChhHHHHHHHHHHHHhccCCHHHHHHHH
Q 021242 193 ---------GIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLG-TGSGHRVKENAVSALLNLVNFGGERAAEEVK 262 (315)
Q Consensus 193 ---------~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~ 262 (315)
.++...+++|..|+. +.....++.++.+|+.. ......+||.++-+|.+++.. +-.-++
T Consensus 361 DDdD~~~dWNLRkCSAAaLDVLan-------vf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEG----cM~g~~ 429 (885)
T KOG2023|consen 361 DDDDAFSDWNLRKCSAAALDVLAN-------VFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEG----CMQGFV 429 (885)
T ss_pred ccccccccccHhhccHHHHHHHHH-------hhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHH----Hhhhcc
Confidence 112222222222221 22223345555555422 113678999999999999742 223343
Q ss_pred HHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhCCCCCCccchHHHHhhh
Q 021242 263 EMAMQVADGIADVAQNGSAKGKTKAVALLKILVDDGNMNITMTNEEILKKL 313 (315)
Q Consensus 263 ~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~~~~~i~~~~~~~~~~~ 313 (315)
.+=-..+|.|+.++.+..|-||...+|+|.+.+.+--.. ..++++||+
T Consensus 430 p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~---~~~~~f~pv 477 (885)
T KOG2023|consen 430 PHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQD---SRDEYFKPV 477 (885)
T ss_pred cchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcC---ChHhhhHHH
Confidence 311235788889999999999999999998888763322 255555553
|
|
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.4e-06 Score=80.84 Aligned_cols=172 Identities=12% Similarity=0.112 Sum_probs=124.6
Q ss_pred hhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc---hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 021242 40 IRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR---DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATL 116 (315)
Q Consensus 40 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~---~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L 116 (315)
+++.+-+.-....+.......|.++..+|+..+.+++..-. .. ....++..+|++++.. +..-++..+.++|
T Consensus 369 ~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg-~~~~dv~~plvqll~d----p~~~i~~~~lgai 443 (678)
T KOG1293|consen 369 LKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTG-LKRNDVAQPLVQLLMD----PEIMIMGITLGAI 443 (678)
T ss_pred HHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcC-CccchhHHHHHHHhhC----cchhHHHHHHHHH
Confidence 34444444444444444444577788888888888876632 33 5567789999999976 5557778899999
Q ss_pred HHhhc-CCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHH-HhhCCcHHHHHHHhcCCCcch
Q 021242 117 HSLLV-VDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQV-IALGGVQPLFSLVVNGGRAGI 194 (315)
Q Consensus 117 ~~Ls~-~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i-~~~g~v~~L~~lL~~~~~~~~ 194 (315)
+||.. +.+.+..+-..+| |+.+.+++.+ .++..+..++|+|+++..+.++..+. ..+..-..++..+..+|+.++
T Consensus 444 ~NlVmefs~~kskfl~~ng-Id~l~s~~~~--~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~V 520 (678)
T KOG1293|consen 444 CNLVMEFSNLKSKFLRNNG-IDILESMLTD--PDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAV 520 (678)
T ss_pred HHHHhhcccHHHHHHHcCc-HHHHHHHhcC--CCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHH
Confidence 99995 7788888888767 9999999994 48899999999999999976655433 334443444444445789999
Q ss_pred HHHHHHHHHHHhc-ChhhHHHHHhcC
Q 021242 195 VEDASAVIAQIAG-CEESVDEFKKCC 219 (315)
Q Consensus 195 ~~~a~~~L~~L~~-~~~~~~~i~~~~ 219 (315)
+|.++.+|+||.. +.+...-+.+.-
T Consensus 521 qeq~fqllRNl~c~~~~svdfll~~~ 546 (678)
T KOG1293|consen 521 QEQCFQLLRNLTCNSRKSVDFLLEKF 546 (678)
T ss_pred HHHHHHHHHHhhcCcHHHHHHHHHhh
Confidence 9999999999954 566666666543
|
|
| >KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.53 E-value=8.3e-06 Score=74.64 Aligned_cols=262 Identities=18% Similarity=0.155 Sum_probs=180.9
Q ss_pred hhhHHHHHHHhCCCCHH--HHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcC-CCHHHHHHHHHHHHhcCcccc-
Q 021242 5 RRTVRSLVTKLGSVSEQ--TRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYS-SSHAFQENAAATLLNLSITSR- 80 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~--~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~la~~~~- 80 (315)
++++..|++++.+++-+ +|.+|...|..+.. .+|++.++..| ...++.+-+. ..++.++-.+.+|.++..+.+
T Consensus 179 ~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee 255 (832)
T KOG3678|consen 179 DGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE 255 (832)
T ss_pred cchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence 46788999999999765 59999999998874 47999999876 5555555544 446788889999999999875
Q ss_pred -hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCC--CchhhhhhccccHHHHHHHhhccCCChHHHHHHH
Q 021242 81 -DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVD--SYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDAL 157 (315)
Q Consensus 81 -~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~--~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~ 157 (315)
..-++..|+++.++...+. .++.+...++.+|.|++... ..+..|.+... -+-|+-+-. ..|.-.+.+|+
T Consensus 256 t~~~Lvaa~~lD~vl~~~rR----t~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~-~EWLF~LA~--skDel~R~~AC 328 (832)
T KOG3678|consen 256 TCQRLVAAGGLDAVLYWCRR----TDPALLRHCALALGNCALHGGQAVQRRMVEKRA-AEWLFPLAF--SKDELLRLHAC 328 (832)
T ss_pred HHHHHHhhcccchheeeccc----CCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhh-hhhhhhhhc--chHHHHHHHHH
Confidence 2334589999999999986 57899999999999998533 34555555433 456666655 34666778899
Q ss_pred HHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcc-hHHHHHHHHHHHhcChhhHHHHHhcC---CHHHHHHHhhcCCC
Q 021242 158 KALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAG-IVEDASAVIAQIAGCEESVDEFKKCC---GIGVLVDLLDLGTG 233 (315)
Q Consensus 158 ~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~-~~~~a~~~L~~L~~~~~~~~~i~~~~---~i~~Lv~ll~~~~~ 233 (315)
-+..-|+.+.+.-..+.+.|.+..+-.++.+ -++. +...+ ..-.+.. .+..|+.+|++
T Consensus 329 lAV~vlat~KE~E~~VrkS~TlaLVEPlva~-~DP~~FARD~--------------hd~aQG~~~d~LqRLvPlLdS--- 390 (832)
T KOG3678|consen 329 LAVAVLATNKEVEREVRKSGTLALVEPLVAS-LDPGRFARDA--------------HDYAQGRGPDDLQRLVPLLDS--- 390 (832)
T ss_pred HHHhhhhhhhhhhHHHhhccchhhhhhhhhc-cCcchhhhhh--------------hhhhccCChHHHHHhhhhhhc---
Confidence 9999999888777777677776655555542 2222 11111 1111111 37888889873
Q ss_pred CChhHHHHHHHHHHHHhccC--CHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhC
Q 021242 234 SGHRVKENAVSALLNLVNFG--GERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDD 297 (315)
Q Consensus 234 ~~~~~~~~a~~~L~~l~~~~--~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~ 297 (315)
.+...+++++++-.+... +...+..+.+ +-|+++.|-.+.++.+...-+.|...|+.+-+.
T Consensus 391 --~R~EAq~i~AF~l~~EAaIKs~Q~K~kVFs-eIGAIQaLKevaSS~d~vaakfAseALtviGEE 453 (832)
T KOG3678|consen 391 --NRLEAQCIGAFYLCAEAAIKSLQGKTKVFS-EIGAIQALKEVASSPDEVAAKFASEALTVIGEE 453 (832)
T ss_pred --chhhhhhhHHHHHHHHHHHHHhccchhHHH-HHHHHHHHHHHhcCchHHHHHHHHHHHHHhccc
Confidence 455556666655422110 1112234444 368999999999998888888899999888664
|
|
| >KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.6e-06 Score=64.57 Aligned_cols=153 Identities=14% Similarity=0.135 Sum_probs=120.5
Q ss_pred ccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHH
Q 021242 134 DIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVD 213 (315)
Q Consensus 134 g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~ 213 (315)
+.+..||+-... ..+.+.++..+.-|.|.+-+|-|-.-+.+..++...++.|. .++..+.+-+.+.|+|+|-++.+.+
T Consensus 16 ~Ylq~LV~efq~-tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~-e~ne~LvefgIgglCNlC~d~~n~~ 93 (173)
T KOG4646|consen 16 EYLQHLVDEFQT-TTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLE-EQNELLVEFGIGGLCNLCLDKTNAK 93 (173)
T ss_pred HHHHHHHHHHHH-hccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhh-cccHHHHHHhHHHHHhhccChHHHH
Confidence 346667776664 46778899999999999999999999999999999999995 5788889999999999999999999
Q ss_pred HHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHH
Q 021242 214 EFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKI 293 (315)
Q Consensus 214 ~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~ 293 (315)
.|.+++|+|..+..+.+. ....-..+..++.-++. +....+.++.. -.+++.+.+...+.+.+.+--|...|.-
T Consensus 94 ~I~ea~g~plii~~lssp---~e~tv~sa~~~l~~l~~-~~Rt~r~ell~--p~Vv~~v~r~~~s~s~~~rnLa~~fl~~ 167 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSSP---PEITVHSAALFLQLLEF-GERTERDELLS--PAVVRTVQRWRESKSHDERNLASAFLDK 167 (173)
T ss_pred HHHHhcCCceEEeecCCC---hHHHHHHHHHHHHHhcC-cccchhHHhcc--HHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999999999988864 55666677888888875 33245677776 4566666666666666666666666554
Q ss_pred H
Q 021242 294 L 294 (315)
Q Consensus 294 l 294 (315)
.
T Consensus 168 ~ 168 (173)
T KOG4646|consen 168 H 168 (173)
T ss_pred h
Confidence 3
|
|
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.5e-07 Score=56.88 Aligned_cols=40 Identities=43% Similarity=0.484 Sum_probs=37.8
Q ss_pred CchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 021242 37 DAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLS 76 (315)
Q Consensus 37 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la 76 (315)
+++++..+++.|+||+|+++|++.++++++.|+++|+|++
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4679999999999999999999999999999999999986
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.3e-05 Score=73.41 Aligned_cols=151 Identities=15% Similarity=0.174 Sum_probs=109.2
Q ss_pred CHHHHHHHHHHHHHhhc-CCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhcc-CCCcHHHHHhhCCcHHH
Q 021242 105 SSAAVQSSAATLHSLLV-VDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL-YPLNRYQVIALGGVQPL 182 (315)
Q Consensus 105 ~~~~~~~a~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~L 182 (315)
+.+....++..+.+++. ...-+.-+... .++.+||.++. .++..+...++++|.|+.. ..+-+.++++.|+|..+
T Consensus 390 d~~~~aaa~l~~~s~srsV~aL~tg~~~~-dv~~plvqll~--dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l 466 (678)
T KOG1293|consen 390 DHDFVAAALLCLKSFSRSVSALRTGLKRN-DVAQPLVQLLM--DPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDIL 466 (678)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcCCccc-hhHHHHHHHhh--CcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHH
Confidence 45666667777777764 33223334333 44899999998 4477788899999999998 45678899999999999
Q ss_pred HHHHhcCCCcchHHHHHHHHHHHhcC-hhhHHHHHhcC-CHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHH
Q 021242 183 FSLVVNGGRAGIVEDASAVIAQIAGC-EESVDEFKKCC-GIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEE 260 (315)
Q Consensus 183 ~~lL~~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~-~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 260 (315)
..++. +++...+..++|+|+++... ++.++.-.... +...++.+..+. +..++|+|...|.|+.+. +......
T Consensus 467 ~s~~~-~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~---d~~Vqeq~fqllRNl~c~-~~~svdf 541 (678)
T KOG1293|consen 467 ESMLT-DPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDP---DWAVQEQCFQLLRNLTCN-SRKSVDF 541 (678)
T ss_pred HHHhc-CCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCC---CHHHHHHHHHHHHHhhcC-cHHHHHH
Confidence 99995 67888999999999999874 43333332333 456666677765 899999999999999864 3233344
Q ss_pred HHH
Q 021242 261 VKE 263 (315)
Q Consensus 261 i~~ 263 (315)
+++
T Consensus 542 ll~ 544 (678)
T KOG1293|consen 542 LLE 544 (678)
T ss_pred HHH
Confidence 444
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00015 Score=72.29 Aligned_cols=183 Identities=14% Similarity=0.061 Sum_probs=108.0
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhc
Q 021242 8 VRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTR 87 (315)
Q Consensus 8 i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~ 87 (315)
++.+.+.|.+.+|.+|..|+.++.++-..+++ .+.+.|.++.|.++|.+.++.++.+|+.+|..+.......+-...
T Consensus 142 ~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~ 218 (746)
T PTZ00429 142 LEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSN 218 (746)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHH
Confidence 34455566677777888888777777655442 344567788888888888888888888888777654433232233
Q ss_pred CchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCC
Q 021242 88 GLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYP 167 (315)
Q Consensus 88 ~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~ 167 (315)
+.+..|+..+.. -++=.+.....+|.. ..+...... ..++..+...|+ +.++.+...|++++.++....
T Consensus 219 ~~~~~Ll~~L~e----~~EW~Qi~IL~lL~~--y~P~~~~e~---~~il~~l~~~Lq--~~N~AVVl~Aik~il~l~~~~ 287 (746)
T PTZ00429 219 EWVNRLVYHLPE----CNEWGQLYILELLAA--QRPSDKESA---ETLLTRVLPRMS--HQNPAVVMGAIKVVANLASRC 287 (746)
T ss_pred HHHHHHHHHhhc----CChHHHHHHHHHHHh--cCCCCcHHH---HHHHHHHHHHhc--CCCHHHHHHHHHHHHHhcCcC
Confidence 445555565553 233344444444432 122221111 245677777777 457889999999999988642
Q ss_pred --CcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc
Q 021242 168 --LNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG 207 (315)
Q Consensus 168 --~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~ 207 (315)
+....+. .-..++++.++. ++++++..++..+..+..
T Consensus 288 ~~~~~~~~~-~rl~~pLv~L~s--s~~eiqyvaLr~I~~i~~ 326 (746)
T PTZ00429 288 SQELIERCT-VRVNTALLTLSR--RDAETQYIVCKNIHALLV 326 (746)
T ss_pred CHHHHHHHH-HHHHHHHHHhhC--CCccHHHHHHHHHHHHHH
Confidence 2111111 122356666653 456677667666655543
|
|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00035 Score=67.91 Aligned_cols=253 Identities=17% Similarity=0.155 Sum_probs=183.3
Q ss_pred hhhhHHHHHHHhCCC--CHHHHHHHHHHHHHHhccCc------h----------hhHHHHh-CCCHHHHHHHHcCCCHHH
Q 021242 4 KRRTVRSLVTKLGSV--SEQTRAEALAELRLLSKHDA------E----------IRPMISE-AGSIPYLAEILYSSSHAF 64 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~--~~~~~~~a~~~L~~l~~~~~------~----------~~~~i~~-~g~i~~Lv~lL~~~~~~~ 64 (315)
--.+.+++++-|+-. +++....++.++..+..+++ . ..+.+++ .+.|..|+.++..-|-.+
T Consensus 59 ga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~V 138 (970)
T KOG0946|consen 59 GAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHV 138 (970)
T ss_pred HHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhh
Confidence 345678889988754 78999999999999987663 1 1234554 788999999999888899
Q ss_pred HHHHHHHHHhcCcccc---hh-hhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHH
Q 021242 65 QENAAATLLNLSITSR---DS-LMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLI 140 (315)
Q Consensus 65 ~~~a~~~L~~la~~~~---~~-~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv 140 (315)
|.+++..|.++-...+ +. ++..+-+|..|+.+|.+ ....+|-.+.-.|..|+.....-..++..+.++..|+
T Consensus 139 R~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D----srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLf 214 (970)
T KOG0946|consen 139 RLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD----SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLF 214 (970)
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh----hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHH
Confidence 9999999988766543 23 56688999999999996 5566777888888888876665554555456699999
Q ss_pred HHhhccCC-Ch--HHHHHHHHHHHHhccC-CCcHHHHHhhCCcHHHHHHHhcC--CCc---ch-------HHHHHHHHHH
Q 021242 141 EIIKTRNS-PL--RSVKDALKALFGIALY-PLNRYQVIALGGVQPLFSLVVNG--GRA---GI-------VEDASAVIAQ 204 (315)
Q Consensus 141 ~ll~~~~~-~~--~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~v~~L~~lL~~~--~~~---~~-------~~~a~~~L~~ 204 (315)
++++.. | .. -+...|+..|-||-.+ ..|...+.+.+-+|.|.++|... .+. .+ ...++.+++.
T Consensus 215 sIIeeE-Gg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~ 293 (970)
T KOG0946|consen 215 SIIEEE-GGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRS 293 (970)
T ss_pred HHHHhc-CCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHH
Confidence 999852 3 11 3568899999999984 56777888889999999888421 121 12 1236667776
Q ss_pred HhcC-------hhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHH
Q 021242 205 IAGC-------EESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKE 263 (315)
Q Consensus 205 L~~~-------~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~ 263 (315)
|-.. ..+.+.+.+.+++..|..++.+. +...+++..++-++++..+.+. +...+...
T Consensus 294 lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~-~vp~dIltesiitvAevVRgn~-~nQ~~F~~ 357 (970)
T KOG0946|consen 294 LVSPGNTSSITHQNQKALVSSHLLDVLCTILMHP-GVPADILTESIITVAEVVRGNA-RNQDEFAD 357 (970)
T ss_pred hcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCC-CCcHhHHHHHHHHHHHHHHhch-HHHHHHhh
Confidence 6431 12334666677889999877764 2567888889999999887443 34344443
|
|
| >KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.7e-06 Score=63.91 Aligned_cols=133 Identities=12% Similarity=0.096 Sum_probs=106.2
Q ss_pred hcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhcc
Q 021242 86 TRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL 165 (315)
Q Consensus 86 ~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~ 165 (315)
..+.+..|++=.+. ..+.+.++....-|.|++.++-|-..+.+. .+++..++-|. ..+...+.-+...|+|+|.
T Consensus 14 Rl~Ylq~LV~efq~---tt~~eakeqv~ANLANFAYDP~Nys~Lrql-~vLdlFvdsl~--e~ne~LvefgIgglCNlC~ 87 (173)
T KOG4646|consen 14 RLEYLQHLVDEFQT---TTNIEAKEQVTANLANFAYDPINYSHLRQL-DVLDLFVDSLE--EQNELLVEFGIGGLCNLCL 87 (173)
T ss_pred HHHHHHHHHHHHHH---hccHHHHHHHHHHHHhhccCcchHHHHHHh-hHHHHHHHHhh--cccHHHHHHhHHHHHhhcc
Confidence 34456777777765 368899998888889999888888888875 55899999998 5578889999999999999
Q ss_pred CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcC-hhhHHHHHhcCCHHHHHHHhh
Q 021242 166 YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGC-EESVDEFKKCCGIGVLVDLLD 229 (315)
Q Consensus 166 ~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~~i~~Lv~ll~ 229 (315)
++.|++.|++++++|..+..+. +|.......++..+..|+.. ...|.++.. |.+++.+.
T Consensus 88 d~~n~~~I~ea~g~plii~~ls-sp~e~tv~sa~~~l~~l~~~~Rt~r~ell~----p~Vv~~v~ 147 (173)
T KOG4646|consen 88 DKTNAKFIREALGLPLIIFVLS-SPPEITVHSAALFLQLLEFGERTERDELLS----PAVVRTVQ 147 (173)
T ss_pred ChHHHHHHHHhcCCceEEeecC-CChHHHHHHHHHHHHHhcCcccchhHHhcc----HHHHHHHH
Confidence 9999999999999999999985 56666777889999999774 445666654 55555544
|
|
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=98.28 E-value=5.3e-05 Score=73.19 Aligned_cols=192 Identities=16% Similarity=0.181 Sum_probs=137.4
Q ss_pred CchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCc----hhhhhhccccHHHHHHHhhccC-----CChHHHHHHHH
Q 021242 88 GLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSY----RPIIGAKRDIIHSLIEIIKTRN-----SPLRSVKDALK 158 (315)
Q Consensus 88 ~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~----~~~i~~~~g~i~~Lv~ll~~~~-----~~~~~~~~a~~ 158 (315)
..++..+.+|+. .+++-+..+...+..+...++. +..+.+.-| .+.|-.+|++.. +......-|+.
T Consensus 5 ~~l~~c~~lL~~----~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig-~~Fl~RLL~t~~~~~~~~~~~~~~Lavs 79 (543)
T PF05536_consen 5 ASLEKCLSLLKS----ADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIG-FKFLDRLLRTGSVPSDCPPEEYLSLAVS 79 (543)
T ss_pred HHHHHHHHHhcc----CCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcC-hhHHHHHhcCCCCCCCCCHHHHHHHHHH
Confidence 457778899986 4556667777788888754332 334556567 688889998521 12345667999
Q ss_pred HHHHhccCCCcH--HHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCCh
Q 021242 159 ALFGIALYPLNR--YQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGH 236 (315)
Q Consensus 159 aL~~Ls~~~~~~--~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~ 236 (315)
.|+.+|++|+.. .+++ +-||.+++.+.+.++..+...|+.+|..++..++|++.+.+.|+++.|.+.+.+ .+
T Consensus 80 vL~~f~~~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~----~~ 153 (543)
T PF05536_consen 80 VLAAFCRDPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN----QS 153 (543)
T ss_pred HHHHHcCChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh----Cc
Confidence 999999988765 4554 789999999975444488999999999999999999999999999999999986 57
Q ss_pred hHHHHHHHHHHHHhccCCHHH----HHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 021242 237 RVKENAVSALLNLVNFGGERA----AEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKIL 294 (315)
Q Consensus 237 ~~~~~a~~~L~~l~~~~~~~~----~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l 294 (315)
..++.+..++.+++....... ...+ ..+++.+...........|-.+..+|..+
T Consensus 154 ~~~E~Al~lL~~Lls~~~~~~~~~~~~~l----~~il~~La~~fs~~~~~~kfell~~L~~~ 211 (543)
T PF05536_consen 154 FQMEIALNLLLNLLSRLGQKSWAEDSQLL----HSILPSLARDFSSFHGEDKFELLEFLSAF 211 (543)
T ss_pred chHHHHHHHHHHHHHhcchhhhhhhHHHH----HHHHHHHHHHHHhhccchHHHHHHHHHHh
Confidence 889999999999886543211 1222 12456666666555445555555555555
|
|
| >KOG2973 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.27 E-value=3e-05 Score=67.58 Aligned_cols=191 Identities=11% Similarity=0.098 Sum_probs=129.6
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcH
Q 021242 91 DAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNR 170 (315)
Q Consensus 91 ~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~ 170 (315)
-.++.++.+ .+|.++..|...+.+|+.. ..+.....+...++.+..++.. .++ ...|+.+|.|++.++..+
T Consensus 6 ~elv~ll~~----~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~--~~~--~~~a~~alVnlsq~~~l~ 76 (353)
T KOG2973|consen 6 VELVELLHS----LSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKD--LDP--AEPAATALVNLSQKEELR 76 (353)
T ss_pred HHHHHHhcc----CChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccC--ccc--ccHHHHHHHHHHhhHHHH
Confidence 456778886 6889999999888888866 5566555555668889999883 233 578999999999999999
Q ss_pred HHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHh--c----CCHHHHHHHhhcCCCCChhHHHHHHH
Q 021242 171 YQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKK--C----CGIGVLVDLLDLGTGSGHRVKENAVS 244 (315)
Q Consensus 171 ~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~--~----~~i~~Lv~ll~~~~~~~~~~~~~a~~ 244 (315)
+.+++. .+..++..+. ++..++.+.++.+|+||++.+.....+.. . .++..++...-+.......--.+...
T Consensus 77 ~~ll~~-~~k~l~~~~~-~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~ 154 (353)
T KOG2973|consen 77 KKLLQD-LLKVLMDMLT-DPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAP 154 (353)
T ss_pred HHHHHH-HHHHHHHHhc-CcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHH
Confidence 999887 7777777775 56678889999999999998776665532 1 46666666554321111122334667
Q ss_pred HHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 021242 245 ALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKIL 294 (315)
Q Consensus 245 ~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l 294 (315)
++.||++... .+......+.-..++|..+-+.++...|...+.+|+|+
T Consensus 155 vf~nls~~~~--gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~ 202 (353)
T KOG2973|consen 155 VFANLSQFEA--GRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNC 202 (353)
T ss_pred HHHHHhhhhh--hhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhh
Confidence 8899987643 44555542222234444444434555556666677764
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00049 Score=69.46 Aligned_cols=258 Identities=16% Similarity=0.129 Sum_probs=159.4
Q ss_pred CHHHHHHHHHHHHHHhccCchhhHHHHh--CCCHHHHHHHHcCC--C--------------HHHHHHHHHHHHhcCcccc
Q 021242 19 SEQTRAEALAELRLLSKHDAEIRPMISE--AGSIPYLAEILYSS--S--------------HAFQENAAATLLNLSITSR 80 (315)
Q Consensus 19 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~Lv~lL~~~--~--------------~~~~~~a~~~L~~la~~~~ 80 (315)
+..+|..|+..|..++...+.-.+.... .-.++.++.+.... | ..--..|.++|-.+|.+-.
T Consensus 262 ~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~ 341 (1075)
T KOG2171|consen 262 ENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLG 341 (1075)
T ss_pred cHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCC
Confidence 5689999999999998775443333333 33355566655321 1 1134567777777777644
Q ss_pred hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHH
Q 021242 81 DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKAL 160 (315)
Q Consensus 81 ~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL 160 (315)
.+.+ -+-..+.+-.++++ .+..-|..+..+|..++.... +.+...-..+++..+..|. +.+|.++..|+.++
T Consensus 342 g~~v-~p~~~~~l~~~l~S----~~w~~R~AaL~Als~i~EGc~-~~m~~~l~~Il~~Vl~~l~--DphprVr~AA~nai 413 (1075)
T KOG2171|consen 342 GKQV-LPPLFEALEAMLQS----TEWKERHAALLALSVIAEGCS-DVMIGNLPKILPIVLNGLN--DPHPRVRYAALNAI 413 (1075)
T ss_pred hhhe-hHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHcccH-HHHHHHHHHHHHHHHhhcC--CCCHHHHHHHHHHH
Confidence 3222 22356777777876 566667777666666553211 2222222344555666667 44889999999999
Q ss_pred HHhccC--CCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHh---cCCHHHHHH-HhhcCCC
Q 021242 161 FGIALY--PLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKK---CCGIGVLVD-LLDLGTG 233 (315)
Q Consensus 161 ~~Ls~~--~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~---~~~i~~Lv~-ll~~~~~ 233 (315)
..++.+ |+..++ -..-.++.|+..+.+..+..++..|+..+-|++. ++ +.+++ -+.+..++. +++++
T Consensus 414 gQ~stdl~p~iqk~-~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~---~~~l~pYLd~lm~~~l~~L~~~~-- 487 (1075)
T KOG2171|consen 414 GQMSTDLQPEIQKK-HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECD---KSILEPYLDGLMEKKLLLLLQSS-- 487 (1075)
T ss_pred HhhhhhhcHHHHHH-HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHhcCC--
Confidence 999984 333333 3456677888888644566788888888887754 32 22221 112332444 34444
Q ss_pred CChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCC-HHHHHHHHHHHHHHh
Q 021242 234 SGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGS-AKGKTKAVALLKILV 295 (315)
Q Consensus 234 ~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~-~~~k~~A~~~L~~l~ 295 (315)
++.++++++.++..++.... ...+.|-.-..|.|..++++.+ +..|.-..+.+.+++
T Consensus 488 -~~~v~e~vvtaIasvA~AA~----~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcis 545 (1075)
T KOG2171|consen 488 -KPYVQEQAVTAIASVADAAQ----EKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLS 545 (1075)
T ss_pred -chhHHHHHHHHHHHHHHHHh----hhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHH
Confidence 89999999999999986432 2344333457888999999864 777776666666554
|
|
| >KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00011 Score=66.59 Aligned_cols=231 Identities=18% Similarity=0.159 Sum_probs=161.5
Q ss_pred HHHHhCC-CCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcC--CCHHHHHHHHHHHHhcCcccc-hhhhhh
Q 021242 11 LVTKLGS-VSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYS--SSHAFQENAAATLLNLSITSR-DSLMST 86 (315)
Q Consensus 11 Lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~~la~~~~-~~~i~~ 86 (315)
|-..+++ .+.+...-++++|..+... +++|..++.++++..++..+.+ .+-.+|=..+-++|-|++++. -+.+..
T Consensus 161 l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~ 239 (442)
T KOG2759|consen 161 LKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKR 239 (442)
T ss_pred HHHHHhccCCCchHHHHHHHHHHHhcC-cchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhh
Confidence 3344444 4568888999999999977 6899999998889999988843 345677788899999999986 455567
Q ss_pred cCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCC-------chhhhhhccccHHHHHHHhhccC-CChHHHHH---
Q 021242 87 RGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDS-------YRPIIGAKRDIIHSLIEIIKTRN-SPLRSVKD--- 155 (315)
Q Consensus 87 ~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~-------~~~~i~~~~g~i~~Lv~ll~~~~-~~~~~~~~--- 155 (315)
-+.|+.|..++++ +..+.+...++.+++||....+ ....+.. ++ ++.-++.|+... .|+++...
T Consensus 240 ~~li~~L~~Ivk~---~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~-~~-v~k~l~~L~~rkysDEDL~~di~~ 314 (442)
T KOG2759|consen 240 FDLIQDLSDIVKE---STKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVL-CK-VLKTLQSLEERKYSDEDLVDDIEF 314 (442)
T ss_pred ccHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHh-cC-chHHHHHHHhcCCCcHHHHHHHHH
Confidence 8899999999996 2455566788899999986552 2345555 36 677777776321 23333211
Q ss_pred ----HHHHHHHhccC------------------------CCcHHHHHhh--CCcHHHHHHHhcCCCcchHHHHHHHHHHH
Q 021242 156 ----ALKALFGIALY------------------------PLNRYQVIAL--GGVQPLFSLVVNGGRAGIVEDASAVIAQI 205 (315)
Q Consensus 156 ----a~~aL~~Ls~~------------------------~~~~~~i~~~--g~v~~L~~lL~~~~~~~~~~~a~~~L~~L 205 (315)
--.....||+. .+|...+-+. ..+..|+.+|..+.++.+..-||-=+...
T Consensus 315 L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~ 394 (442)
T KOG2759|consen 315 LTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEY 394 (442)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHH
Confidence 11112222321 2344444432 56888999997544455555566555555
Q ss_pred hc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHh
Q 021242 206 AG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLV 250 (315)
Q Consensus 206 ~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~ 250 (315)
-. .|+|+..+.+.||=..+..+|.+. +++++.+|+.++..+-
T Consensus 395 Vr~yP~gk~vv~k~ggKe~vM~Llnh~---d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 395 VRHYPEGKAVVEKYGGKERVMNLLNHE---DPEVRYHALLAVQKLM 437 (442)
T ss_pred HHhCchHhHHHHHhchHHHHHHHhcCC---CchHHHHHHHHHHHHH
Confidence 44 699999999999999999999986 8999999999887764
|
|
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00019 Score=69.41 Aligned_cols=235 Identities=13% Similarity=0.089 Sum_probs=157.1
Q ss_pred hhhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCch---hhHHHHhCCCHHHHHHHHcC-------CCHHHHHHHHHHH
Q 021242 3 VKRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAE---IRPMISEAGSIPYLAEILYS-------SSHAFQENAAATL 72 (315)
Q Consensus 3 ~~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~---~~~~i~~~g~i~~Lv~lL~~-------~~~~~~~~a~~~L 72 (315)
.....+.+.+.+|++.+-+.|..++-.+.++.+.++. .++.+.++=+.+-|-++|++ +....+.-|+.+|
T Consensus 2 ~~~~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL 81 (543)
T PF05536_consen 2 GQSASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVL 81 (543)
T ss_pred CchHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Confidence 3456789999999999878899999999999987663 34568887778888899976 2245788899999
Q ss_pred HhcCcccc----hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCC
Q 021242 73 LNLSITSR----DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNS 148 (315)
Q Consensus 73 ~~la~~~~----~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~ 148 (315)
..++..++ .+++ +-||.|+..+.+. +..++...+..+|..++.+++++..+.+.++ ++.|+..+.+
T Consensus 82 ~~f~~~~~~a~~~~~~---~~IP~Lle~l~~~---s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~-v~~L~ei~~~--- 151 (543)
T PF05536_consen 82 AAFCRDPELASSPQMV---SRIPLLLEILSSS---SDLETVDDALQCLLAIASSPEGAKALLESGA-VPALCEIIPN--- 151 (543)
T ss_pred HHHcCChhhhcCHHHH---HHHHHHHHHHHcC---CchhHHHHHHHHHHHHHcCcHhHHHHHhcCC-HHHHHHHHHh---
Confidence 99998764 2333 4699999999862 3347888999999999999999999998655 9999999983
Q ss_pred ChHHHHHHHHHHHHhccCCCcH-----HHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhh--HHHHHhcCC-
Q 021242 149 PLRSVKDALKALFGIALYPLNR-----YQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEES--VDEFKKCCG- 220 (315)
Q Consensus 149 ~~~~~~~a~~aL~~Ls~~~~~~-----~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~--~~~i~~~~~- 220 (315)
.+.....|+.+|.+++...... ...+ ...++.+-..+. ..+...+...+..|..+-...+. .........
T Consensus 152 ~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l-~~il~~La~~fs-~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~ 229 (543)
T PF05536_consen 152 QSFQMEIALNLLLNLLSRLGQKSWAEDSQLL-HSILPSLARDFS-SFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWL 229 (543)
T ss_pred CcchHHHHHHHHHHHHHhcchhhhhhhHHHH-HHHHHHHHHHHH-hhccchHHHHHHHHHHhcCcCCccccccCChhhhH
Confidence 4566788999999988743311 0100 133444444443 22334455667777766332210 111111111
Q ss_pred ---HHHHHHHhhcCCCCChhHHHHHHHHHHHHhc
Q 021242 221 ---IGVLVDLLDLGTGSGHRVKENAVSALLNLVN 251 (315)
Q Consensus 221 ---i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~ 251 (315)
..-+..++++. ..+..+..+..+...+..
T Consensus 230 ~~l~~gl~~iL~sr--~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 230 SDLRKGLRDILQSR--LTPSQRDPALNLAASLLD 261 (543)
T ss_pred HHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHH
Confidence 23333455543 456666666655555543
|
|
| >KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0006 Score=68.26 Aligned_cols=255 Identities=13% Similarity=0.087 Sum_probs=166.0
Q ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc-hhhhhh
Q 021242 9 RSLVTKLG-SVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR-DSLMST 86 (315)
Q Consensus 9 ~~Lv~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~-~~~i~~ 86 (315)
+-+...|. .+++.+|.-|+..+..+.. +.+.-..+++.|++..|+.+|.| -|+.++.++.+|+.|+.+.+ -+...+
T Consensus 1774 ~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~~ 1851 (2235)
T KOG1789|consen 1774 PLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSSNGQIGKEALE 1851 (2235)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhcCcHHHHHHHh
Confidence 34444454 3467899999998887764 46788889999999999999964 58899999999999999887 233348
Q ss_pred cCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCc--h--------------hhhhhccccHHHHHHHhhccCCCh
Q 021242 87 RGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSY--R--------------PIIGAKRDIIHSLIEIIKTRNSPL 150 (315)
Q Consensus 87 ~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~--~--------------~~i~~~~g~i~~Lv~ll~~~~~~~ 150 (315)
.|++.-+.+++-. ..+++.+..++..+..|...+-. | ..+++ + -+.-|++++..+++|
T Consensus 1852 hg~l~yil~~~c~---~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD--~-PEAaVH~fE~T~EnP 1925 (2235)
T KOG1789|consen 1852 HGGLMYILSILCL---TNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRD--S-PEAAVHMFESTSENP 1925 (2235)
T ss_pred cCchhhhhHHHhc---cCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhc--C-HHHHHHHHhccCCCc
Confidence 8888888888864 26788888888888888754321 1 12222 2 244555555322333
Q ss_pred HH------HHHHHHHHHHhc------------------------------------------------------------
Q 021242 151 RS------VKDALKALFGIA------------------------------------------------------------ 164 (315)
Q Consensus 151 ~~------~~~a~~aL~~Ls------------------------------------------------------------ 164 (315)
+. +...-..+..+.
T Consensus 1926 ELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LL 2005 (2235)
T KOG1789|consen 1926 ELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELL 2005 (2235)
T ss_pred ccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHH
Confidence 22 111111111111
Q ss_pred ----------------------------c-CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHH
Q 021242 165 ----------------------------L-YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEF 215 (315)
Q Consensus 165 ----------------------------~-~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i 215 (315)
+ +|.....+-..|-+|-++..+. ..+..+-..|+.+|+.|+.+....+++
T Consensus 2006 ek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~-~~n~s~P~SaiRVlH~Lsen~~C~~AM 2084 (2235)
T KOG1789|consen 2006 EKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMC-LQNTSAPRSAIRVLHELSENQFCCDAM 2084 (2235)
T ss_pred HHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHH-hcCCcCcHHHHHHHHHHhhccHHHHHH
Confidence 0 1111222222344444444443 112233356889999999999999999
Q ss_pred HhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhh
Q 021242 216 KKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQN 278 (315)
Q Consensus 216 ~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~ 278 (315)
.+...+..++..++. -+....-|+.+|..+.....++....+++ .|.+|.|+.+++.
T Consensus 2085 A~l~~i~~~m~~mkK----~~~~~GLA~EalkR~~~r~~~eLVAQ~LK--~gLvpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2085 AQLPCIDGIMKSMKK----QPSLMGLAAEALKRLMKRNTGELVAQMLK--CGLVPYLLQLLDS 2141 (2235)
T ss_pred hccccchhhHHHHHh----cchHHHHHHHHHHHHHHHhHHHHHHHHhc--cCcHHHHHHHhcc
Confidence 888877778887774 34455588899999887655555566666 8999999999874
|
|
| >KOG2734 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0012 Score=60.46 Aligned_cols=243 Identities=18% Similarity=0.201 Sum_probs=169.7
Q ss_pred hhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCc---------hhhHHHHhCCCHHHHHHHHcCCCHH------HHHHH
Q 021242 4 KRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDA---------EIRPMISEAGSIPYLAEILYSSSHA------FQENA 68 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~---------~~~~~i~~~g~i~~Lv~lL~~~~~~------~~~~a 68 (315)
+=.+++.|+++|.+.+-++-...+..+..++..+. .--..+++.++++.|+.-+..=|.+ -..++
T Consensus 123 eln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~ 202 (536)
T KOG2734|consen 123 ELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNT 202 (536)
T ss_pred HhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHH
Confidence 34678999999999999999999999999986542 1245788899999999988653333 34456
Q ss_pred HHHHHhcCcccc--hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc-CCCchhhhhhccccHHHHHHHhhc
Q 021242 69 AATLLNLSITSR--DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV-VDSYRPIIGAKRDIIHSLIEIIKT 145 (315)
Q Consensus 69 ~~~L~~la~~~~--~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~ll~~ 145 (315)
+.++-|+..-.+ ...+++.|.+.-|++-+... ..-...+..|..+|.-+-. .++++..++.-.| +..++.-+..
T Consensus 203 L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k--~~f~aNk~YasEiLaillq~s~e~~~~~~~l~G-iD~lL~~la~ 279 (536)
T KOG2734|consen 203 LAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGK--AAFDANKQYASEILAILLQNSDENRKLLGPLDG-IDVLLRQLAV 279 (536)
T ss_pred HHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcc--cCcchhHHHHHHHHHHHhccCchhhhhhcCccc-HHHHHhhcch
Confidence 666667665443 34445666666666655421 1233457788888888875 4558888888778 8888876542
Q ss_pred c--CC-----ChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcCh---hhHHHH
Q 021242 146 R--NS-----PLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCE---ESVDEF 215 (315)
Q Consensus 146 ~--~~-----~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~---~~~~~i 215 (315)
. ++ ..+..++-.-+|+.+-..++|+..++...++..+.-+++. ..-.+..++++|......+ +++..+
T Consensus 280 yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~--Kk~sr~SalkvLd~am~g~~gt~~C~kf 357 (536)
T KOG2734|consen 280 YKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE--KKVSRGSALKVLDHAMFGPEGTPNCNKF 357 (536)
T ss_pred hhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH--HHHhhhhHHHHHHHHHhCCCchHHHHHH
Confidence 1 11 2345677778888878899999999998888877777752 2334667999999987754 567788
Q ss_pred HhcCCHHHHHHHhh-cC------CCCChhHHHHHHHHHHHHhc
Q 021242 216 KKCCGIGVLVDLLD-LG------TGSGHRVKENAVSALLNLVN 251 (315)
Q Consensus 216 ~~~~~i~~Lv~ll~-~~------~~~~~~~~~~a~~~L~~l~~ 251 (315)
++..|...+..+.. .. ........++.+.+|+.+..
T Consensus 358 Ve~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~ 400 (536)
T KOG2734|consen 358 VEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR 400 (536)
T ss_pred HHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence 88888877777554 11 01234567788888888765
|
|
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00067 Score=62.48 Aligned_cols=254 Identities=14% Similarity=0.114 Sum_probs=171.9
Q ss_pred HHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc-hhhhhhcCchHHHHHHHhcCCCCCCH
Q 021242 28 AELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR-DSLMSTRGLLDAISHVLRHHSTSTSS 106 (315)
Q Consensus 28 ~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~-~~~i~~~~~i~~L~~lL~~~~~~~~~ 106 (315)
..|..+.+..+..|..+.-.-.++.+..++-+.+.+++-+|.++++-+..+.. -+.+.+.+.--.++.-|.... .+.
T Consensus 5 N~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~--~~~ 82 (371)
T PF14664_consen 5 NDLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDN--KND 82 (371)
T ss_pred HHHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccC--CCh
Confidence 34555666667677776666667777766656668899999999988777765 344556666666666665321 233
Q ss_pred HHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhcc-CCCcHHHHHhhCCcHHHHHH
Q 021242 107 AAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL-YPLNRYQVIALGGVQPLFSL 185 (315)
Q Consensus 107 ~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~L~~l 185 (315)
.=++.|...++.+...+++...+- .|++..++.+.. ..++..+..|+.+|..++. +| ..+..+|+++.|++.
T Consensus 83 ~ER~QALkliR~~l~~~~~~~~~~--~~vvralvaiae--~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~ 155 (371)
T PF14664_consen 83 VEREQALKLIRAFLEIKKGPKEIP--RGVVRALVAIAE--HEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRA 155 (371)
T ss_pred HHHHHHHHHHHHHHHhcCCcccCC--HHHHHHHHHHHh--CCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHH
Confidence 447789999999887665555453 478999999999 4577899999999999997 44 345678999999999
Q ss_pred HhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcC----CCCCh---hHHHHHHHHHHHHhccCCHHHH
Q 021242 186 VVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLG----TGSGH---RVKENAVSALLNLVNFGGERAA 258 (315)
Q Consensus 186 L~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~----~~~~~---~~~~~a~~~L~~l~~~~~~~~~ 258 (315)
+. ++..++.+..+.++-.+-..|..|+-+...-.+..++.-+.+. ...+. ..+ ++..++..+-+.-++ .
T Consensus 156 l~-d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~-~s~~ai~~~LrsW~G-L- 231 (371)
T PF14664_consen 156 LI-DGSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQ-ASAKAISTLLRSWPG-L- 231 (371)
T ss_pred HH-hccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHH-HHHHHHHHHHhcCCc-e-
Confidence 97 3444577888899999999999999775433466666644422 01122 333 344444444443322 1
Q ss_pred HHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 021242 259 EEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKIL 294 (315)
Q Consensus 259 ~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l 294 (315)
-..-.....+++.|++.+..+++++|+..-.++--+
T Consensus 232 l~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dl 267 (371)
T PF14664_consen 232 LYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDL 267 (371)
T ss_pred eeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 111121125788899999999999999888865444
|
|
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=98.10 E-value=7.1e-06 Score=50.29 Aligned_cols=41 Identities=34% Similarity=0.328 Sum_probs=37.5
Q ss_pred ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhc
Q 021242 208 CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVN 251 (315)
Q Consensus 208 ~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~ 251 (315)
++++++.+++.|++|.|+++|.++ +..++++|+++|+|||.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~---~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSP---DPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSS---SHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCC---CHHHHHHHHHHHHHHhC
Confidence 467899999999999999999976 99999999999999973
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0014 Score=62.02 Aligned_cols=233 Identities=14% Similarity=0.107 Sum_probs=154.6
Q ss_pred CCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCC-----CHHHHHHHHHHHHhcCcccc---hhhhhhcC
Q 021242 17 SVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSS-----SHAFQENAAATLLNLSITSR---DSLMSTRG 88 (315)
Q Consensus 17 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~-----~~~~~~~a~~~L~~la~~~~---~~~i~~~~ 88 (315)
..++.+..+|+++|+|..-.++..|..+++.|..+.++..|+.. +.++.....++|+-++.... ++++.+.+
T Consensus 43 ~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~ 122 (446)
T PF10165_consen 43 SPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHH 122 (446)
T ss_pred CCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhh
Confidence 45679999999999999999999999999999999999999875 67888999999988876542 45666778
Q ss_pred chHHHHHHHhcCC------CC-------CCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhcc-------CC
Q 021242 89 LLDAISHVLRHHS------TS-------TSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTR-------NS 148 (315)
Q Consensus 89 ~i~~L~~lL~~~~------~~-------~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~-------~~ 148 (315)
+++.+...|..+. .. ...+....+..+++|++........ ....+.++.|+.++... ..
T Consensus 123 ~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~ 201 (446)
T PF10165_consen 123 GVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPP 201 (446)
T ss_pred hHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCc
Confidence 8888877664220 00 1233455788999999864443322 11123367777665421 11
Q ss_pred ChHHHHHHHHHHHHhccCC-Cc-------HH----HHHhhCCcHHHHHHHhcC----CC-c--chHHHHHHHHHHHhcC-
Q 021242 149 PLRSVKDALKALFGIALYP-LN-------RY----QVIALGGVQPLFSLVVNG----GR-A--GIVEDASAVIAQIAGC- 208 (315)
Q Consensus 149 ~~~~~~~a~~aL~~Ls~~~-~~-------~~----~i~~~g~v~~L~~lL~~~----~~-~--~~~~~a~~~L~~L~~~- 208 (315)
.......+..+|.|+-... +. .. .-.....+..|+++|... .. . ......+.+|..++..
T Consensus 202 l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~ 281 (446)
T PF10165_consen 202 LDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAA 281 (446)
T ss_pred chhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhc
Confidence 1245667888888873210 10 00 011234466677777431 11 1 2345577888888775
Q ss_pred hhhHHHHHh--------------cC-C-HHHHHHHhhcCCCCChhHHHHHHHHHHHHhccC
Q 021242 209 EESVDEFKK--------------CC-G-IGVLVDLLDLGTGSGHRVKENAVSALLNLVNFG 253 (315)
Q Consensus 209 ~~~~~~i~~--------------~~-~-i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~ 253 (315)
...|+.+.. .| . -..|++++.+. .+.++..+...|+.||..+
T Consensus 282 ~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~---~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 282 REVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP---DPQLKDAVAELLFVLCKED 339 (446)
T ss_pred HHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC---CchHHHHHHHHHHHHHhhh
Confidence 555555543 13 2 57899999875 5899999999999998743
|
It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion. |
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.002 Score=64.35 Aligned_cols=254 Identities=10% Similarity=0.042 Sum_probs=169.6
Q ss_pred hhhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccch-
Q 021242 3 VKRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRD- 81 (315)
Q Consensus 3 ~~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~- 81 (315)
.|++-+..|-..|.+.+...+..|++.+...-....+. ..+.+.+++++.+.+.+++.-.-..|.+++...+.
T Consensus 29 ~~kge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~Dv------S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pel 102 (746)
T PTZ00429 29 TRRGEGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDV------SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEK 102 (746)
T ss_pred cccchHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCc------hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHH
Confidence 35667788888898888888888887666554332211 23577788899999999998888888888765433
Q ss_pred hhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHH
Q 021242 82 SLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALF 161 (315)
Q Consensus 82 ~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~ 161 (315)
.++ .+..+.+=+.+ +++.++..|.+++.++-. ...+ + -+++.+.+.+. +.++-+++.|+-++.
T Consensus 103 alL----aINtl~KDl~d----~Np~IRaLALRtLs~Ir~----~~i~-e--~l~~~lkk~L~--D~~pYVRKtAalai~ 165 (746)
T PTZ00429 103 ALL----AVNTFLQDTTN----SSPVVRALAVRTMMCIRV----SSVL-E--YTLEPLRRAVA--DPDPYVRKTAAMGLG 165 (746)
T ss_pred HHH----HHHHHHHHcCC----CCHHHHHHHHHHHHcCCc----HHHH-H--HHHHHHHHHhc--CCCHHHHHHHHHHHH
Confidence 233 45566666665 688888888877776443 2222 2 23677777887 568999999999999
Q ss_pred Hhcc-CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHH
Q 021242 162 GIAL-YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKE 240 (315)
Q Consensus 162 ~Ls~-~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~ 240 (315)
.+-. +++ .+.+.|.++.|.++|. ++++.+...|+.+|..+......+-. ...+.+..++..+... +++.|-
T Consensus 166 Kly~~~pe---lv~~~~~~~~L~~LL~-D~dp~Vv~nAl~aL~eI~~~~~~~l~-l~~~~~~~Ll~~L~e~---~EW~Qi 237 (746)
T PTZ00429 166 KLFHDDMQ---LFYQQDFKKDLVELLN-DNNPVVASNAAAIVCEVNDYGSEKIE-SSNEWVNRLVYHLPEC---NEWGQL 237 (746)
T ss_pred HHHhhCcc---cccccchHHHHHHHhc-CCCccHHHHHHHHHHHHHHhCchhhH-HHHHHHHHHHHHhhcC---ChHHHH
Confidence 9876 332 2345688889999885 77889999999999999653222111 1233466777777643 788887
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 021242 241 NAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILV 295 (315)
Q Consensus 241 ~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~ 295 (315)
..+.+|....-.+ + .+. ...+..+...+++.++-|.-.|.+++-.+.
T Consensus 238 ~IL~lL~~y~P~~-~---~e~----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~ 284 (746)
T PTZ00429 238 YILELLAAQRPSD-K---ESA----ETLLTRVLPRMSHQNPAVVMGAIKVVANLA 284 (746)
T ss_pred HHHHHHHhcCCCC-c---HHH----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 7666665432111 1 122 225556666777777777777777655554
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.6e-05 Score=56.18 Aligned_cols=86 Identities=24% Similarity=0.310 Sum_probs=70.1
Q ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhh
Q 021242 8 VRSLVTKL-GSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMST 86 (315)
Q Consensus 8 i~~Lv~~L-~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~ 86 (315)
||.|++.| +++++.+|..++..|..+... .++|.|+.+++++++.++..|+++|..+ ..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~~-----------~~~~~L~~~l~d~~~~vr~~a~~aL~~i---------~~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGDP-----------EAIPALIELLKDEDPMVRRAAARALGRI---------GD 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTHH-----------HHHHHHHHHHTSSSHHHHHHHHHHHHCC---------HH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCCH-----------hHHHHHHHHHcCCCHHHHHHHHHHHHHh---------CC
Confidence 68899999 888999999999999955321 3499999999999999999999999877 24
Q ss_pred cCchHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 021242 87 RGLLDAISHVLRHHSTSTSSAAVQSSAATL 116 (315)
Q Consensus 87 ~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L 116 (315)
...++.|.+++.+ ..+..++..|+.+|
T Consensus 61 ~~~~~~L~~~l~~---~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 61 PEAIPALIKLLQD---DDDEVVREAAAEAL 87 (88)
T ss_dssp HHTHHHHHHHHTC----SSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC---CCcHHHHHHHHhhc
Confidence 5589999999986 24555677777766
|
|
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0029 Score=58.32 Aligned_cols=167 Identities=16% Similarity=0.165 Sum_probs=118.5
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCC--CHHHHHHHHHHHHhcCcccc-hhhhh
Q 021242 9 RSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSS--SHAFQENAAATLLNLSITSR-DSLMS 85 (315)
Q Consensus 9 ~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~la~~~~-~~~i~ 85 (315)
+.+..++=+++.++|..|.+.++-+..+ +..-+.+.+.+.=..++.-|... +..=+++|++.+..+..-+. .+.+
T Consensus 28 ~~i~~~lL~~~~~vraa~yRilRy~i~d-~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~- 105 (371)
T PF14664_consen 28 ERIQCMLLSDSKEVRAAGYRILRYLISD-EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEI- 105 (371)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHHHcC-HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccC-
Confidence 3333344444489999999999988855 67788888877655556666442 33457889998877655432 2222
Q ss_pred hcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhcc
Q 021242 86 TRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL 165 (315)
Q Consensus 86 ~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~ 165 (315)
..+.+..++.+..+ .++..+..|..+|..++..++ ..+..+|| +..|++.+. ++..+.....+.++..+-.
T Consensus 106 ~~~vvralvaiae~----~~D~lr~~cletL~El~l~~P--~lv~~~gG-~~~L~~~l~--d~~~~~~~~l~~~lL~lLd 176 (371)
T PF14664_consen 106 PRGVVRALVAIAEH----EDDRLRRICLETLCELALLNP--ELVAECGG-IRVLLRALI--DGSFSISESLLDTLLYLLD 176 (371)
T ss_pred CHHHHHHHHHHHhC----CchHHHHHHHHHHHHHHhhCH--HHHHHcCC-HHHHHHHHH--hccHhHHHHHHHHHHHHhC
Confidence 55678899999987 567889999999999997544 34456678 899999888 4566677888999999999
Q ss_pred CCCcHHHHHhhCCcHHHHHHH
Q 021242 166 YPLNRYQVIALGGVQPLFSLV 186 (315)
Q Consensus 166 ~~~~~~~i~~~g~v~~L~~lL 186 (315)
+|+.|..+...--+..++.-+
T Consensus 177 ~p~tR~yl~~~~dL~~l~apf 197 (371)
T PF14664_consen 177 SPRTRKYLRPGFDLESLLAPF 197 (371)
T ss_pred CcchhhhhcCCccHHHHHHhh
Confidence 999998776433344444444
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0015 Score=61.00 Aligned_cols=152 Identities=16% Similarity=0.019 Sum_probs=107.7
Q ss_pred hhHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhh
Q 021242 6 RTVRSLVTKLG-SVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLM 84 (315)
Q Consensus 6 ~~i~~Lv~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i 84 (315)
..++.|+..|. ..+++.+..++..+... .++. ++..|+..|.+.++.++..++.+|..+
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~--~~~~---------~~~~L~~~L~d~~~~vr~aaa~ALg~i--------- 113 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLAQ--EDAL---------DLRSVLAVLQAGPEGLCAGIQAALGWL--------- 113 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhcc--CChH---------HHHHHHHHhcCCCHHHHHHHHHHHhcC---------
Confidence 46788889995 55677777666555432 2111 389999999988888999999999654
Q ss_pred hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhc
Q 021242 85 STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIA 164 (315)
Q Consensus 85 ~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls 164 (315)
......+.|+.+|++ .++.++..+..++.. ... ...+.|..+|+ +.++.++..|+++|..+.
T Consensus 114 ~~~~a~~~L~~~L~~----~~p~vR~aal~al~~----------r~~--~~~~~L~~~L~--d~d~~Vra~A~raLG~l~ 175 (410)
T TIGR02270 114 GGRQAEPWLEPLLAA----SEPPGRAIGLAALGA----------HRH--DPGPALEAALT--HEDALVRAAALRALGELP 175 (410)
T ss_pred CchHHHHHHHHHhcC----CChHHHHHHHHHHHh----------hcc--ChHHHHHHHhc--CCCHHHHHHHHHHHHhhc
Confidence 366678888999986 677777666655544 111 22578888888 568899999999998865
Q ss_pred cCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHh
Q 021242 165 LYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIA 206 (315)
Q Consensus 165 ~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~ 206 (315)
. ..+++.|...+. +.++.++..|++.+..+-
T Consensus 176 ~----------~~a~~~L~~al~-d~~~~VR~aA~~al~~lG 206 (410)
T TIGR02270 176 R----------RLSESTLRLYLR-DSDPEVRFAALEAGLLAG 206 (410)
T ss_pred c----------ccchHHHHHHHc-CCCHHHHHHHHHHHHHcC
Confidence 3 345555666664 567888888888887663
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.1e-05 Score=47.92 Aligned_cols=40 Identities=35% Similarity=0.450 Sum_probs=36.7
Q ss_pred chhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCc
Q 021242 38 AEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSI 77 (315)
Q Consensus 38 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~ 77 (315)
++++..+++.|+||+|++++++.+++++..|+++|+|++.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 3588899999999999999999999999999999999873
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. |
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0073 Score=58.51 Aligned_cols=262 Identities=14% Similarity=0.168 Sum_probs=169.2
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhh
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLM 84 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i 84 (315)
|+--+.++.+|+++-|-+|.+|+..+..+.-.-|+. + --.+|.|++-|.++||.++-+|+.+++.||..+++..+
T Consensus 143 RDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA---l--r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL 217 (877)
T KOG1059|consen 143 RDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA---L--RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL 217 (877)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh---H--hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc
Confidence 444567889999999999999999999887654542 2 23489999999999999999999999999988775543
Q ss_pred hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHH--H
Q 021242 85 STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALF--G 162 (315)
Q Consensus 85 ~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~--~ 162 (315)
..-|.+.++|..- .+.=...........|+- .-..++. -++++|..++.+ +.-..+.-.|..++. +
T Consensus 218 ---~LAP~ffkllttS---sNNWmLIKiiKLF~aLtp---lEPRLgK--KLieplt~li~s-T~AmSLlYECvNTVVa~s 285 (877)
T KOG1059|consen 218 ---QLAPLFYKLLVTS---SNNWVLIKLLKLFAALTP---LEPRLGK--KLIEPITELMES-TVAMSLLYECVNTVVAVS 285 (877)
T ss_pred ---cccHHHHHHHhcc---CCCeehHHHHHHHhhccc---cCchhhh--hhhhHHHHHHHh-hHHHHHHHHHHHHheeeh
Confidence 2457777888641 222223333344444443 2334554 458999999984 222344555666554 3
Q ss_pred hccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHH
Q 021242 163 IALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKEN 241 (315)
Q Consensus 163 Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~ 241 (315)
++..-.+....+ .-++.-|-.++. +.+..++-.++-+++-+.. +++..++. -..+++.|.+. +..++-.
T Consensus 286 ~s~g~~d~~asi-qLCvqKLr~fie-dsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~Dk---D~SIRlr 355 (877)
T KOG1059|consen 286 MSSGMSDHSASI-QLCVQKLRIFIE-DSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDK---DESIRLR 355 (877)
T ss_pred hccCCCCcHHHH-HHHHHHHhhhhh-cCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccC---CchhHHH
Confidence 333322222222 234556666675 5678888888877777765 44433333 25667788865 7889999
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHccCcHHHHHH-HHhhC-CHHHHHHHHHHHHHHhhCCCCCCc
Q 021242 242 AVSALLNLVNFGGERAAEEVKEMAMQVADGIAD-VAQNG-SAKGKTKAVALLKILVDDGNMNIT 303 (315)
Q Consensus 242 a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~-ll~~~-~~~~k~~A~~~L~~l~~~~~~~i~ 303 (315)
|+..|+.+.. .....+|++ .|.. +..++ +.-.-+....++..++.+.+.+|+
T Consensus 356 ALdLl~gmVs---kkNl~eIVk-------~LM~~~~~ae~t~yrdell~~II~iCS~snY~~It 409 (877)
T KOG1059|consen 356 ALDLLYGMVS---KKNLMEIVK-------TLMKHVEKAEGTNYRDELLTRIISICSQSNYQYIT 409 (877)
T ss_pred HHHHHHHHhh---hhhHHHHHH-------HHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhh
Confidence 9999999864 234455554 4543 33333 334445566678888877777664
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00015 Score=52.19 Aligned_cols=87 Identities=22% Similarity=0.296 Sum_probs=69.2
Q ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhh
Q 021242 50 IPYLAEIL-YSSSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPI 128 (315)
Q Consensus 50 i~~Lv~lL-~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~ 128 (315)
||.|++.| ++.++.++..++.+|..+. ....++.|+.++++ +++.++..++.+|..+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~---------~~~~~~~L~~~l~d----~~~~vr~~a~~aL~~i--------- 58 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG---------DPEAIPALIELLKD----EDPMVRRAAARALGRI--------- 58 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT---------HHHHHHHHHHHHTS----SSHHHHHHHHHHHHCC---------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC---------CHhHHHHHHHHHcC----CCHHHHHHHHHHHHHh---------
Confidence 68999999 8889999999999998552 34569999999986 7899999999999876
Q ss_pred hhhccccHHHHHHHhhccCCChHHHHHHHHHHH
Q 021242 129 IGAKRDIIHSLIEIIKTRNSPLRSVKDALKALF 161 (315)
Q Consensus 129 i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~ 161 (315)
+. ...++.|.+++.++ .+..++..|..+|.
T Consensus 59 -~~-~~~~~~L~~~l~~~-~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 59 -GD-PEAIPALIKLLQDD-DDEVVREAAAEALG 88 (88)
T ss_dssp -HH-HHTHHHHHHHHTC--SSHHHHHHHHHHHH
T ss_pred -CC-HHHHHHHHHHHcCC-CcHHHHHHHHhhcC
Confidence 23 34589999999852 45566788888874
|
|
| >KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00027 Score=65.02 Aligned_cols=161 Identities=15% Similarity=0.170 Sum_probs=121.2
Q ss_pred hhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHH
Q 021242 126 RPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQI 205 (315)
Q Consensus 126 ~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L 205 (315)
++.++..+| +..|+.++..++-...++..|.+.|-.+. ..+|+..+++.| +..++.+-......+.....+++|.++
T Consensus 173 CD~iR~~~~-lD~Llrmf~aPn~et~vRve~~rlLEq~~-~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 173 CDAIRLDGG-LDLLLRMFQAPNLETSVRVEAARLLEQIL-VAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM 249 (832)
T ss_pred hhHhhccch-HHHHHHHHhCCchhHHHHHHHHHHHHHHH-hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 556666566 89999999976445567889999998844 578888888765 333333332223345677789999999
Q ss_pred hcC-hhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHH
Q 021242 206 AGC-EESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGK 284 (315)
Q Consensus 206 ~~~-~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k 284 (315)
-.+ ++..+.+++.||+..++-..+.. ++.+..+|.-+|.|++.++.....+.|++ ..+.+.|-.+..+.++..|
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~rRt---~P~lLRH~ALAL~N~~L~~~~a~qrrmve--Kr~~EWLF~LA~skDel~R 324 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWCRRT---DPALLRHCALALGNCALHGGQAVQRRMVE--KRAAEWLFPLAFSKDELLR 324 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeecccC---CHHHHHHHHHHhhhhhhhchhHHHHHHHH--hhhhhhhhhhhcchHHHHH
Confidence 884 78899999999998887777653 78888899999999988776677788988 6777888888777788888
Q ss_pred HHHHHHHHHH
Q 021242 285 TKAVALLKIL 294 (315)
Q Consensus 285 ~~A~~~L~~l 294 (315)
-.|+-....+
T Consensus 325 ~~AClAV~vl 334 (832)
T KOG3678|consen 325 LHACLAVAVL 334 (832)
T ss_pred HHHHHHHhhh
Confidence 8877654443
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00087 Score=62.99 Aligned_cols=230 Identities=15% Similarity=0.096 Sum_probs=149.4
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHh-CCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchh-hhh
Q 021242 8 VRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISE-AGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDS-LMS 85 (315)
Q Consensus 8 i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~-~i~ 85 (315)
.+-|..+|+.+++++|..+=.++.++... -.+.....+ ...++.++.-+.++++.+|..|+.-+..+..-..+. +..
T Consensus 210 ldGLf~~LsD~s~eVr~~~~t~l~~fL~e-I~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~ 288 (675)
T KOG0212|consen 210 LDGLFNMLSDSSDEVRTLTDTLLSEFLAE-IRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLY 288 (675)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHH-HhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhh
Confidence 45678899999999997666666665433 122222223 677999999999999999999999888877665443 444
Q ss_pred hcCchHHHHHHHhcCCCCCCHHHHHHHH---HHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHH
Q 021242 86 TRGLLDAISHVLRHHSTSTSSAAVQSSA---ATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFG 162 (315)
Q Consensus 86 ~~~~i~~L~~lL~~~~~~~~~~~~~~a~---~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~ 162 (315)
-+|.+..++..+.+. +...++..+. .-+..+......+.-+. -+..+..|.+.+. ++..+.+..++.-+..
T Consensus 289 ~s~il~~iLpc~s~~---e~~~i~~~a~~~n~~l~~l~s~~~~~~~id-~~~ii~vl~~~l~--~~~~~tri~~L~Wi~~ 362 (675)
T KOG0212|consen 289 LSGILTAILPCLSDT---EEMSIKEYAQMVNGLLLKLVSSERLKEEID-YGSIIEVLTKYLS--DDREETRIAVLNWIIL 362 (675)
T ss_pred hhhhhhhcccCCCCC---ccccHHHHHHHHHHHHHHHHhhhhhccccc-hHHHHHHHHHHhh--cchHHHHHHHHHHHHH
Confidence 667777777777651 2212333222 22333333333333333 3566888888888 5577777777766666
Q ss_pred hccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHH
Q 021242 163 IALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENA 242 (315)
Q Consensus 163 Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a 242 (315)
|-....+..........+.|+.-|. +++..+...++.+++++|.++....- -..+..|+.+...+ ..-....+
T Consensus 363 l~~~~p~ql~~h~~~if~tLL~tLs-d~sd~vvl~~L~lla~i~~s~~~~~~---~~fl~sLL~~f~e~---~~~l~~Rg 435 (675)
T KOG0212|consen 363 LYHKAPGQLLVHNDSIFLTLLKTLS-DRSDEVVLLALSLLASICSSSNSPNL---RKFLLSLLEMFKED---TKLLEVRG 435 (675)
T ss_pred HHhhCcchhhhhccHHHHHHHHhhc-CchhHHHHHHHHHHHHHhcCcccccH---HHHHHHHHHHHhhh---hHHHHhhh
Confidence 6655555555455677888888884 67888999999999999987655411 11345556666543 45566667
Q ss_pred HHHHHHHhc
Q 021242 243 VSALLNLVN 251 (315)
Q Consensus 243 ~~~L~~l~~ 251 (315)
.-++.++|.
T Consensus 436 ~lIIRqlC~ 444 (675)
T KOG0212|consen 436 NLIIRQLCL 444 (675)
T ss_pred hHHHHHHHH
Confidence 777777775
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0004 Score=66.35 Aligned_cols=275 Identities=13% Similarity=0.102 Sum_probs=161.7
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHh-CCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhh
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISE-AGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSL 83 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~ 83 (315)
+.-+|+++++.++++|.+|..|+.++-.+.-.. +...+.. .-.++.+..+-.+.++.+|.+.+.+|.-|-.-...++
T Consensus 173 ~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~--~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl 250 (885)
T KOG2023|consen 173 NIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ--TQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKL 250 (885)
T ss_pred HHhHHHHHHHHhCCChhHHHHHHhhhhheeecC--cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhc
Confidence 356899999999999999999999998876442 2233333 5567777777788899999988888755543222222
Q ss_pred h-hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhh-ccccHHHHHHHhhccCCCh-----------
Q 021242 84 M-STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGA-KRDIIHSLIEIIKTRNSPL----------- 150 (315)
Q Consensus 84 i-~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~~g~i~~Lv~ll~~~~~~~----------- 150 (315)
+ --.+.++-+++.-++ .+.++-..||.....++..+-.+..+.. -..+||.|+.-+..++.|.
T Consensus 251 ~phl~~IveyML~~tqd----~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~ 326 (885)
T KOG2023|consen 251 VPHLDNIVEYMLQRTQD----VDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDES 326 (885)
T ss_pred ccchHHHHHHHHHHccC----cchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCcccccc
Confidence 2 123455555555554 4667778899999999988866666543 1233444442211110110
Q ss_pred -------------------------------------------HHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHh
Q 021242 151 -------------------------------------------RSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVV 187 (315)
Q Consensus 151 -------------------------------------------~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~ 187 (315)
..++..+.+|--| ..+.....++.++.+|+
T Consensus 327 vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVL-------anvf~~elL~~l~PlLk 399 (885)
T KOG2023|consen 327 VPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVL-------ANVFGDELLPILLPLLK 399 (885)
T ss_pred CCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHH-------HHhhHHHHHHHHHHHHH
Confidence 0111111111111 12334566777777775
Q ss_pred cC-CCcch--HHHHHHHHHHHhcChhhHHHHHhcC--CHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHH
Q 021242 188 NG-GRAGI--VEDASAVIAQIAGCEESVDEFKKCC--GIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVK 262 (315)
Q Consensus 188 ~~-~~~~~--~~~a~~~L~~L~~~~~~~~~i~~~~--~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~ 262 (315)
.. .+..+ +|.+.-+|..++. -+-+-++.+= -||-|+++|.+. .+-+|.-+||+|.+.++.-..+...+-.
T Consensus 400 ~~L~~~~W~vrEagvLAlGAIAE--GcM~g~~p~LpeLip~l~~~L~DK---kplVRsITCWTLsRys~wv~~~~~~~~f 474 (885)
T KOG2023|consen 400 EHLSSEEWKVREAGVLALGAIAE--GCMQGFVPHLPELIPFLLSLLDDK---KPLVRSITCWTLSRYSKWVVQDSRDEYF 474 (885)
T ss_pred HHcCcchhhhhhhhHHHHHHHHH--HHhhhcccchHHHHHHHHHHhccC---ccceeeeeeeeHhhhhhhHhcCChHhhh
Confidence 33 23443 4444333333321 1122222211 368888888865 7888989999999876532111111111
Q ss_pred HHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhCCCC
Q 021242 263 EMAMQVADGIADVAQNGSAKGKTKAVALLKILVDDGNM 300 (315)
Q Consensus 263 ~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~~~~ 300 (315)
.-++..|+..+-+++.+|++.|+..+..+-+..-.
T Consensus 475 ---~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~ 509 (885)
T KOG2023|consen 475 ---KPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGE 509 (885)
T ss_pred ---HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccc
Confidence 12444555556678999999999999888776544
|
|
| >COG5369 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00011 Score=68.41 Aligned_cols=272 Identities=13% Similarity=0.092 Sum_probs=163.5
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchh---hh
Q 021242 8 VRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDS---LM 84 (315)
Q Consensus 8 i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~---~i 84 (315)
++.|++.|+.++..+.--+...++++.-.-..-+..+.+.|+|..|+.++.+.|..+|.+..|+|+++-.+.++. ..
T Consensus 433 ~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~~ 512 (743)
T COG5369 433 VELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKFKF 512 (743)
T ss_pred HHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhhhh
Confidence 567888888877667777888899988665667889999999999999999999999999999999998886532 23
Q ss_pred hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcC-CC---chhhhhhccc---cHHHHHHHhhccCCChHHHHHHH
Q 021242 85 STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVV-DS---YRPIIGAKRD---IIHSLIEIIKTRNSPLRSVKDAL 157 (315)
Q Consensus 85 ~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~-~~---~~~~i~~~~g---~i~~Lv~ll~~~~~~~~~~~~a~ 157 (315)
...-++..++++..+ +.-.++.....+|+|++++ .. .+..+-.... +...|++.++. ..+..+ ...+
T Consensus 513 Lakig~~kvl~~~ND----pc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~-~np~~i-~~~~ 586 (743)
T COG5369 513 LAKIGVEKVLSYTND----PCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEE-NNPMEI-LEGC 586 (743)
T ss_pred HHhcCHHHHHHHhcC----cccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHh-cCchhh-hhhH
Confidence 466789999999986 5667888999999999972 22 3444433212 23444455552 233444 4446
Q ss_pred HHHHHhccCCCcHHHHH-h-hCCcHHHHHHHhcC-CC-------c--chHHHHHHHHHHHhcChhhHHHHHhcCCHHHHH
Q 021242 158 KALFGIALYPLNRYQVI-A-LGGVQPLFSLVVNG-GR-------A--GIVEDASAVIAQIAGCEESVDEFKKCCGIGVLV 225 (315)
Q Consensus 158 ~aL~~Ls~~~~~~~~i~-~-~g~v~~L~~lL~~~-~~-------~--~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv 225 (315)
-.|.+++..+++...++ + ...+..+...|.+. .. . .+.-.-..+..++..+ +++....+
T Consensus 587 yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~---------~d~f~r~~ 657 (743)
T COG5369 587 YILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSEN---------SDKFKRLV 657 (743)
T ss_pred HHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeeccccc---------ccccccce
Confidence 66666666666665554 3 35555555555321 00 0 0111111222223221 12222211
Q ss_pred H------HhhcC-CCCChhHHHHHHHHHHHHhcc--CCH-----HHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHH
Q 021242 226 D------LLDLG-TGSGHRVKENAVSALLNLVNF--GGE-----RAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALL 291 (315)
Q Consensus 226 ~------ll~~~-~~~~~~~~~~a~~~L~~l~~~--~~~-----~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L 291 (315)
. ..... +..+.+.-....|+..++.-. +.+ ..+..++. ..|.-..|+.+..++++.||+++..+|
T Consensus 658 ~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~-~~G~~e~l~k~q~~~Sl~vrek~~taL 736 (743)
T COG5369 658 LTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILC-ANGIREWLVKIQAKDSLIVREKIGTAL 736 (743)
T ss_pred ecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHH-HccHHHHHHHHhccCcHHHHHHHHHHH
Confidence 1 11111 011233444555555554311 111 12344555 245555555666678999999999998
Q ss_pred HHHh
Q 021242 292 KILV 295 (315)
Q Consensus 292 ~~l~ 295 (315)
-+++
T Consensus 737 ~~l~ 740 (743)
T COG5369 737 ENLR 740 (743)
T ss_pred Hhhh
Confidence 7664
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0084 Score=57.17 Aligned_cols=278 Identities=12% Similarity=0.141 Sum_probs=161.2
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHH-HHHHHHhcCcccchhhh
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQEN-AAATLLNLSITSRDSLM 84 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~-a~~~L~~la~~~~~~~i 84 (315)
...+.+.+.+.+.....|..|...++-+.+. ..-..+.+.+.+..|-..+.+......+. +..+.-....+-. --
T Consensus 134 ~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g--~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg--~~ 209 (569)
T KOG1242|consen 134 YVLELLLELLTSTKIAERAGAAYGLAGLVNG--LGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG--PP 209 (569)
T ss_pred HHHHHHHHHhccccHHHHhhhhHHHHHHHcC--cHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC--CC
Confidence 3445666777777778888888888888755 34566677888888888887654433322 2222211111111 11
Q ss_pred hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc-CCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHh
Q 021242 85 STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV-VDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGI 163 (315)
Q Consensus 85 ~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~L 163 (315)
.+++.++.+..+|.+.+. ....++..+..+...+.. .+... ...++|.++.-+.. .....+..++..|..+
T Consensus 210 ~EPyiv~~lp~il~~~~d-~~~~Vr~Aa~~a~kai~~~~~~~a-----VK~llpsll~~l~~--~kWrtK~aslellg~m 281 (569)
T KOG1242|consen 210 FEPYIVPILPSILTNFGD-KINKVREAAVEAAKAIMRCLSAYA-----VKLLLPSLLGSLLE--AKWRTKMASLELLGAM 281 (569)
T ss_pred CCchHHhhHHHHHHHhhc-cchhhhHHHHHHHHHHHHhcCcch-----hhHhhhhhHHHHHH--HhhhhHHHHHHHHHHH
Confidence 245556666666653211 345667666666655542 22211 12345666655542 2456677888888888
Q ss_pred ccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhh--HH---------------------------H
Q 021242 164 ALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEES--VD---------------------------E 214 (315)
Q Consensus 164 s~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~--~~---------------------------~ 214 (315)
+..........-..++|.+.+.|- +.++++++.+-.+|..+++.-++ .+ .
T Consensus 282 ~~~ap~qLs~~lp~iiP~lsevl~-DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~tt 360 (569)
T KOG1242|consen 282 ADCAPKQLSLCLPDLIPVLSEVLW-DTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATT 360 (569)
T ss_pred HHhchHHHHHHHhHhhHHHHHHHc-cCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhccee
Confidence 876555555566789999999994 67888888888888776532111 11 1
Q ss_pred HH---hcCCHHHHHHHhhcCC-CCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHH
Q 021242 215 FK---KCCGIGVLVDLLDLGT-GSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVAL 290 (315)
Q Consensus 215 i~---~~~~i~~Lv~ll~~~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~ 290 (315)
|+ +...+..++.+++.+. ..+...+..++.+++|+|..-.|. +.+..+---.+|-|-..+.+..|++|.-|.+.
T Consensus 361 FV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp--~~lapfl~~Llp~lk~~~~d~~PEvR~vaarA 438 (569)
T KOG1242|consen 361 FVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDP--KDLAPFLPSLLPGLKENLDDAVPEVRAVAARA 438 (569)
T ss_pred eeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCH--HHHhhhHHHHhhHHHHHhcCCChhHHHHHHHH
Confidence 11 1112344444444331 125667888999999999754332 23322001244555556666689999999998
Q ss_pred H-HHHhhCC
Q 021242 291 L-KILVDDG 298 (315)
Q Consensus 291 L-~~l~~~~ 298 (315)
| ..+.+-+
T Consensus 439 L~~l~e~~g 447 (569)
T KOG1242|consen 439 LGALLERLG 447 (569)
T ss_pred HHHHHHHHH
Confidence 8 4444433
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0053 Score=58.14 Aligned_cols=263 Identities=16% Similarity=0.143 Sum_probs=133.0
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhc
Q 021242 8 VRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTR 87 (315)
Q Consensus 8 i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~ 87 (315)
.|.|-.+|++.-..++.++++.+..++..+. -..+. ...+..|-.+|++.....|..|.++|-.++...+.++....
T Consensus 266 rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv--~~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN 342 (898)
T COG5240 266 RPFLNSWLSDKFEMVFLEAARAVCALSEENV--GSQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCN 342 (898)
T ss_pred HHHHHHHhcCcchhhhHHHHHHHHHHHHhcc--CHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecC
Confidence 4566677777777899999999999986641 11222 23477888888888889999999999999876543322111
Q ss_pred CchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCC
Q 021242 88 GLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYP 167 (315)
Q Consensus 88 ~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~ 167 (315)
--++ +++.+ .+..+...|..+|.. ++++++-..+.. - |+..++=++ ++-.-+...|++.|+++- |
T Consensus 343 ~evE---sLIsd----~Nr~IstyAITtLLK-TGt~e~idrLv~--~-I~sfvhD~S--D~FKiI~ida~rsLsl~F--p 407 (898)
T COG5240 343 KEVE---SLISD----ENRTISTYAITTLLK-TGTEETIDRLVN--L-IPSFVHDMS--DGFKIIAIDALRSLSLLF--P 407 (898)
T ss_pred hhHH---HHhhc----ccccchHHHHHHHHH-cCchhhHHHHHH--H-HHHHHHhhc--cCceEEeHHHHHHHHhhC--c
Confidence 1222 22222 122222223222222 233333333322 1 333333333 111112223333333222 1
Q ss_pred CcHH--------HHHhhCC-------cHHHHHHHhcCCCcchHHHHHHHHHHHhc-Ch--hhHHHHH----hcC------
Q 021242 168 LNRY--------QVIALGG-------VQPLFSLVVNGGRAGIVEDASAVIAQIAG-CE--ESVDEFK----KCC------ 219 (315)
Q Consensus 168 ~~~~--------~i~~~g~-------v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~~--~~~~~i~----~~~------ 219 (315)
.-+. .+.+.|+ +..+.+++. ..+..++.|+..|+..-. ++ ...-.|. ++|
T Consensus 408 ~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~--~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P 485 (898)
T COG5240 408 SKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAME--NDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTP 485 (898)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHh--hCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCc
Confidence 1111 1122333 223334432 133445555555544311 11 1111110 011
Q ss_pred C--HHHHHH-HhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhh
Q 021242 220 G--IGVLVD-LLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 220 ~--i~~Lv~-ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
+ |..+.. ++- .+..++..|+.+|..++..-++. ... ..+...|-+++.+.+.++|+.|..+|++++.
T Consensus 486 ~~yvrhIyNR~iL----EN~ivRsaAv~aLskf~ln~~d~----~~~--~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~ 555 (898)
T COG5240 486 GKYVRHIYNRLIL----ENNIVRSAAVQALSKFALNISDV----VSP--QSVENALKRCLNDQDDEVRDRASFLLRNMRL 555 (898)
T ss_pred chHHHHHHHHHHH----hhhHHHHHHHHHHHHhccCcccc----ccH--HHHHHHHHHHhhcccHHHHHHHHHHHHhhhh
Confidence 1 222222 111 15577888888887776544332 222 3345566788999999999999999999986
Q ss_pred CCCC
Q 021242 297 DGNM 300 (315)
Q Consensus 297 ~~~~ 300 (315)
...+
T Consensus 556 ~da~ 559 (898)
T COG5240 556 SDAC 559 (898)
T ss_pred hhhh
Confidence 5544
|
|
| >KOG2734 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.018 Score=52.97 Aligned_cols=246 Identities=14% Similarity=0.154 Sum_probs=165.9
Q ss_pred HHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCccc---c--h---hh---hhhcCchHHHH
Q 021242 26 ALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITS---R--D---SL---MSTRGLLDAIS 94 (315)
Q Consensus 26 a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~---~--~---~~---i~~~~~i~~L~ 94 (315)
.+..+..+|.- |.-...+++.++++.|+.+|.+.+.++-.+.+..|..++-.+ + . .+ .++.+.++.|+
T Consensus 104 ~IQ~mhvlAt~-PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLv 182 (536)
T KOG2734|consen 104 IIQEMHVLATM-PDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLV 182 (536)
T ss_pred HHHHHHhhhcC-hHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHH
Confidence 44555556644 677778999999999999999999999999999999998654 1 1 22 34778889998
Q ss_pred HHHhcCC--CCCCHHHHHHHHHHHHHhhcCC-CchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccC-CCcH
Q 021242 95 HVLRHHS--TSTSSAAVQSSAATLHSLLVVD-SYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALY-PLNR 170 (315)
Q Consensus 95 ~lL~~~~--~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~-~~~~ 170 (315)
+-+..-. .-............+-|+...+ ..+..+++. |++.-|+.-+.....-..-..+|...|.-+-.+ .+++
T Consensus 183 qnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~-~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~ 261 (536)
T KOG2734|consen 183 QNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQ-GLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENR 261 (536)
T ss_pred HHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHh-hHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhh
Confidence 8886311 0011123346777888888655 456666664 766666663331112234567788888877774 4578
Q ss_pred HHHHhhCCcHHHHHHHh----cCC----CcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHH
Q 021242 171 YQVIALGGVQPLFSLVV----NGG----RAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENA 242 (315)
Q Consensus 171 ~~i~~~g~v~~L~~lL~----~~~----~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a 242 (315)
...-...++..+++-+. ++| ..++.++....|+.+-..+++|..|....|+.-..-+++. ....+..+
T Consensus 262 ~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~----Kk~sr~Sa 337 (536)
T KOG2734|consen 262 KLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE----KKVSRGSA 337 (536)
T ss_pred hhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH----HHHhhhhH
Confidence 88888899999887772 122 2245666777777777789999999998898877777774 45667778
Q ss_pred HHHHHHHhccCCH-HHHHHHHHHccCcHHHHHH-HHhhC
Q 021242 243 VSALLNLVNFGGE-RAAEEVKEMAMQVADGIAD-VAQNG 279 (315)
Q Consensus 243 ~~~L~~l~~~~~~-~~~~~i~~~~~g~~~~L~~-ll~~~ 279 (315)
..+|......... ..+...++ .++++.+-. .++.+
T Consensus 338 lkvLd~am~g~~gt~~C~kfVe--~lGLrtiF~~FMk~p 374 (536)
T KOG2734|consen 338 LKVLDHAMFGPEGTPNCNKFVE--ILGLRTIFPLFMKTP 374 (536)
T ss_pred HHHHHHHHhCCCchHHHHHHHH--HHhHHHHHHHHhhCc
Confidence 8888877653221 45667776 666666653 34433
|
|
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.022 Score=50.57 Aligned_cols=290 Identities=11% Similarity=0.078 Sum_probs=174.0
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchh----hHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc-
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEI----RPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR- 80 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~----~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~- 80 (315)
...|.|-.-|..++..++.-++..+..+..+.+.| ...++.+|..+.++..+...|.++..+|...+..++..+.
T Consensus 82 nlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaa 161 (524)
T KOG4413|consen 82 NLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAA 161 (524)
T ss_pred hhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHH
Confidence 33444555556667778888888888887665432 3355679999999999999999999999999999987764
Q ss_pred hhhhhhcCchHHHHHH---HhcCCCCCCHHHHHHHHHHHHHhhc-CCCchhhhhhccccHHHHHHHhhccCCChHHHHHH
Q 021242 81 DSLMSTRGLLDAISHV---LRHHSTSTSSAAVQSSAATLHSLLV-VDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDA 156 (315)
Q Consensus 81 ~~~i~~~~~i~~L~~l---L~~~~~~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a 156 (315)
-..+...+..+.+-.. .+. +.-.+......+-.+.+ +++..... ...|++..|..=++- +.|.-+..++
T Consensus 162 leaiFeSellDdlhlrnlaakc-----ndiaRvRVleLIieifSiSpesanec-kkSGLldlLeaElkG-teDtLVianc 234 (524)
T KOG4413|consen 162 LEAIFESELLDDLHLRNLAAKC-----NDIARVRVLELIIEIFSISPESANEC-KKSGLLDLLEAELKG-TEDTLVIANC 234 (524)
T ss_pred HHHhcccccCChHHHhHHHhhh-----hhHHHHHHHHHHHHHHhcCHHHHhHh-hhhhHHHHHHHHhcC-CcceeehhhH
Confidence 3333355555444222 221 22344455555666554 44433333 335777777776652 3466677889
Q ss_pred HHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcch-HHHHHHHHHHH----hcChhhHHHHHhc--CCHHHHHHHhh
Q 021242 157 LKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGI-VEDASAVIAQI----AGCEESVDEFKKC--CGIGVLVDLLD 229 (315)
Q Consensus 157 ~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~-~~~a~~~L~~L----~~~~~~~~~i~~~--~~i~~Lv~ll~ 229 (315)
+.....|+-....+..+-+.|.+..+-..+...+..+. ...++.....+ +.-+-.-+++++. ..|...+.++.
T Consensus 235 iElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiE 314 (524)
T KOG4413|consen 235 IELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIE 314 (524)
T ss_pred HHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhh
Confidence 99999999888899998899999998888853222333 22233333222 2211112233322 13555566666
Q ss_pred cCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHH-HHHHHHHHHHhhCCCC---CCccc
Q 021242 230 LGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGK-TKAVALLKILVDDGNM---NITMT 305 (315)
Q Consensus 230 ~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k-~~A~~~L~~l~~~~~~---~i~~~ 305 (315)
.. ++..++.|+.++..+..... .+..+..++--..++++.=.-+.+...+ +.|...|..+++.... +|+.+
T Consensus 315 mn---DpdaieaAiDalGilGSnte--GadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDg 389 (524)
T KOG4413|consen 315 MN---DPDAIEAAIDALGILGSNTE--GADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDG 389 (524)
T ss_pred cC---CchHHHHHHHHHHhccCCcc--hhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhcccc
Confidence 54 78999999999999864322 2234444111235555533333333333 3444567777665333 46664
Q ss_pred hH
Q 021242 306 NE 307 (315)
Q Consensus 306 ~~ 307 (315)
..
T Consensus 390 ka 391 (524)
T KOG4413|consen 390 KA 391 (524)
T ss_pred HH
Confidence 43
|
|
| >PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.011 Score=56.08 Aligned_cols=267 Identities=16% Similarity=0.137 Sum_probs=163.7
Q ss_pred HHHHHHHHhccCchhhHHHHhCCCHHHHHHHH----------cCCCHHHHHHHHHHHHhcCcccc--hhhhhhcCchHHH
Q 021242 26 ALAELRLLSKHDAEIRPMISEAGSIPYLAEIL----------YSSSHAFQENAAATLLNLSITSR--DSLMSTRGLLDAI 93 (315)
Q Consensus 26 a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL----------~~~~~~~~~~a~~~L~~la~~~~--~~~i~~~~~i~~L 93 (315)
|+.+|+-+.. ++.+...+....++..|+++- ...+..+...|+++|.|+-+... +....+.|+.+.+
T Consensus 1 ~L~~LRiLsR-d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l 79 (446)
T PF10165_consen 1 CLETLRILSR-DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL 79 (446)
T ss_pred CHHHHHHHcc-CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence 3566777764 467777777777788877776 23467899999999999998875 5666789999999
Q ss_pred HHHHhcCCC-CCCHHHHHHHHHHHHHhhc-CCCchhhhhhccccHHHHHHHhhcc--------C-------CChHHHHHH
Q 021242 94 SHVLRHHST-STSSAAVQSSAATLHSLLV-VDSYRPIIGAKRDIIHSLIEIIKTR--------N-------SPLRSVKDA 156 (315)
Q Consensus 94 ~~lL~~~~~-~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~ll~~~--------~-------~~~~~~~~a 156 (315)
+..|+.... ..+.+......+.|+-++. ..+.+..+.+..+.+..++..|..+ . .+......+
T Consensus 80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei 159 (446)
T PF10165_consen 80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI 159 (446)
T ss_pred HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence 999986321 1256777888899988885 5555655555434478777766532 1 133456789
Q ss_pred HHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcC-----CCc---chHHHHHHHHHHHhcChhhHHH----------HH--
Q 021242 157 LKALFGIALYPLNRYQVIALGGVQPLFSLVVNG-----GRA---GIVEDASAVIAQIAGCEESVDE----------FK-- 216 (315)
Q Consensus 157 ~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~-----~~~---~~~~~a~~~L~~L~~~~~~~~~----------i~-- 216 (315)
++++.|+..+......-...+.++.++.++..- +.. +..-.+..+|.|+-. ..... +.
T Consensus 160 LKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl--~~~~~l~~~~~~~~~~~~~ 237 (446)
T PF10165_consen 160 LKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPL--ECLDSLLSPKFQQSSLFPE 237 (446)
T ss_pred HHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCCh--HHHhhhhcccCCcccccCC
Confidence 999999987433222112245555555554321 122 234445556665521 11111 11
Q ss_pred --hcCCHHHHHHHhhcCCC--CC---hhHHHHHHHHHHHHhccCCHHHHHHHHH--------------HccCcHHHHHHH
Q 021242 217 --KCCGIGVLVDLLDLGTG--SG---HRVKENAVSALLNLVNFGGERAAEEVKE--------------MAMQVADGIADV 275 (315)
Q Consensus 217 --~~~~i~~Lv~ll~~~~~--~~---~~~~~~a~~~L~~l~~~~~~~~~~~i~~--------------~~~g~~~~L~~l 275 (315)
....+..|+.+|...-. .. ...-.-.+.+|..++... ...++.+-. .+...-..|+++
T Consensus 238 ~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~-~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrL 316 (446)
T PF10165_consen 238 GDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAA-REVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRL 316 (446)
T ss_pred CCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhc-HHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHH
Confidence 11136777877753200 01 122233566677777643 234444432 134557889999
Q ss_pred HhhCCHHHHHHHHHHHHHHhh
Q 021242 276 AQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 276 l~~~~~~~k~~A~~~L~~l~~ 296 (315)
+.+..+.+|..++.+|=.|.+
T Consensus 317 mt~~~~~~k~~vaellf~Lc~ 337 (446)
T PF10165_consen 317 MTSPDPQLKDAVAELLFVLCK 337 (446)
T ss_pred hCCCCchHHHHHHHHHHHHHh
Confidence 999889999999998866653
|
It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion. |
| >PF11841 DUF3361: Domain of unknown function (DUF3361) | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0038 Score=49.89 Aligned_cols=131 Identities=15% Similarity=0.192 Sum_probs=95.5
Q ss_pred hhhccccHHHHHHHhhccCC----ChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCC-CcchHHHHHHHHH
Q 021242 129 IGAKRDIIHSLIEIIKTRNS----PLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGG-RAGIVEDASAVIA 203 (315)
Q Consensus 129 i~~~~g~i~~Lv~ll~~~~~----~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~-~~~~~~~a~~~L~ 203 (315)
+-..+| +..|++++++... ..+....++.++..|..+.-.-=..++...+...+.++.... +.++...++.+|.
T Consensus 7 FI~~~G-l~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILE 85 (160)
T PF11841_consen 7 FISRDG-LTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILE 85 (160)
T ss_pred HHhccC-HHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHH
Confidence 334468 8999999994311 126677889999888875543334556666777788886433 6788999999999
Q ss_pred HHhcChhh-HHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHH
Q 021242 204 QIAGCEES-VDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKE 263 (315)
Q Consensus 204 ~L~~~~~~-~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~ 263 (315)
++..+... .+.+.++=-++.|+.+|+.. +..++.++...+..|....++..+++|.+
T Consensus 86 s~Vl~S~~ly~~V~~evt~~~Li~hLq~~---~~~iq~naiaLinAL~~kA~~~~r~~i~~ 143 (160)
T PF11841_consen 86 SIVLNSPKLYQLVEQEVTLESLIRHLQVS---NQEIQTNAIALINALFLKADDSKRKEIAE 143 (160)
T ss_pred HHHhCCHHHHHHHhccCCHHHHHHHHHcC---CHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 99776555 55454433599999999975 88999999999999987666556667754
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.051 Score=49.42 Aligned_cols=156 Identities=19% Similarity=0.213 Sum_probs=108.1
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhh
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMS 85 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~ 85 (315)
..++.+++.+.+.++.+|..|...+..+.. .-++|.+..++.+.++.++..|+.+|..+ .
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~---------~ 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGEL---------G 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHcc---------C
Confidence 467888888888888888888888555543 23599999999999999999999988776 2
Q ss_pred hcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChH------------HH
Q 021242 86 TRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLR------------SV 153 (315)
Q Consensus 86 ~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~------------~~ 153 (315)
.+..++.|+.++.. ..+..++..++++|..+-. ... +.+|+..+.+ .... ++
T Consensus 103 ~~~a~~~li~~l~~---d~~~~vR~~aa~aL~~~~~----------~~a-~~~l~~~l~~--~~~~~a~~~~~~~~~~~r 166 (335)
T COG1413 103 DPEAVPPLVELLEN---DENEGVRAAAARALGKLGD----------ERA-LDPLLEALQD--EDSGSAAAALDAALLDVR 166 (335)
T ss_pred ChhHHHHHHHHHHc---CCcHhHHHHHHHHHHhcCc----------hhh-hHHHHHHhcc--chhhhhhhhccchHHHHH
Confidence 56689999999984 1567788888888887432 223 7788888773 2321 22
Q ss_pred HHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcC
Q 021242 154 KDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGC 208 (315)
Q Consensus 154 ~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~ 208 (315)
..+..+|..+ -..-.++.+..++. +++..++..+...|..+...
T Consensus 167 ~~a~~~l~~~----------~~~~~~~~l~~~l~-~~~~~vr~~Aa~aL~~~~~~ 210 (335)
T COG1413 167 AAAAEALGEL----------GDPEAIPLLIELLE-DEDADVRRAAASALGQLGSE 210 (335)
T ss_pred HHHHHHHHHc----------CChhhhHHHHHHHh-CchHHHHHHHHHHHHHhhcc
Confidence 2222222221 12345677788885 45566777787787777554
|
|
| >COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.028 Score=49.76 Aligned_cols=227 Identities=15% Similarity=0.137 Sum_probs=146.4
Q ss_pred CHHHHHHHHHHHHhcCcccc-hhh-hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHH
Q 021242 61 SHAFQENAAATLLNLSITSR-DSL-MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHS 138 (315)
Q Consensus 61 ~~~~~~~a~~~L~~la~~~~-~~~-i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~ 138 (315)
++-.+--|+++|.++....+ +.+ ..+..+-..++.++++. -+..+.+-++.-++|.|+..+.....+..--..|.-
T Consensus 162 ~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~--vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~d 239 (432)
T COG5231 162 DFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNY--VGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLIND 239 (432)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhh--hhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 44467779999999999876 333 34555777888999853 256788889999999999988776555443355778
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHhcc-CC-CcHHHHHhhCCcHHHHHHHhcC--CCcchHHH---HHHHHHH----Hh-
Q 021242 139 LIEIIKTRNSPLRSVKDALKALFGIAL-YP-LNRYQVIALGGVQPLFSLVVNG--GRAGIVED---ASAVIAQ----IA- 206 (315)
Q Consensus 139 Lv~ll~~~~~~~~~~~~a~~aL~~Ls~-~~-~~~~~i~~~g~v~~L~~lL~~~--~~~~~~~~---a~~~L~~----L~- 206 (315)
|+.+++. ....++.+-++..+.|++. .| .....+.-.|-+..-++.|... .+++++.. .-..|-+ ||
T Consensus 240 li~iVk~-~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~ 318 (432)
T COG5231 240 LIAIVKE-RAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCI 318 (432)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhH
Confidence 8888874 2445777889999999887 33 3334455556555556666432 23333221 2222221 11
Q ss_pred -----------------------cChhhHHHHHhcC--CHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHH
Q 021242 207 -----------------------GCEESVDEFKKCC--GIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEV 261 (315)
Q Consensus 207 -----------------------~~~~~~~~i~~~~--~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i 261 (315)
.+..+.+.+.+.. .+..|.++++... .+..++ -||.=+.++....+ +....+
T Consensus 319 fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~-~nt~i~-vAc~Di~~~Vr~~P-E~~~vl 395 (432)
T COG5231 319 FDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNN-PNTWIC-VACSDIFQLVRASP-EINAVL 395 (432)
T ss_pred HHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCC-CCceEe-eeHhhHHHHHHhCc-hHHHHH
Confidence 1223445554433 3688888888652 233444 34444555555443 443445
Q ss_pred HHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 021242 262 KEMAMQVADGIADVAQNGSAKGKTKAVALLKILV 295 (315)
Q Consensus 262 ~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~ 295 (315)
.. -|+-+.+.+++.++++++|-.|..+++.+-
T Consensus 396 ~K--yg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 396 SK--YGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HH--hhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 44 899999999999999999999999888763
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0011 Score=56.82 Aligned_cols=179 Identities=17% Similarity=0.124 Sum_probs=109.2
Q ss_pred CCCCHHHHHHHHHHHHHHhccC--chhhHHHHh--CCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhh-hhhcCch
Q 021242 16 GSVSEQTRAEALAELRLLSKHD--AEIRPMISE--AGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSL-MSTRGLL 90 (315)
Q Consensus 16 ~~~~~~~~~~a~~~L~~l~~~~--~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~-i~~~~~i 90 (315)
.+.+.+.|..|+..|..+...+ ......+.+ ...++.+...+.+....+...|+.++..++..-.... -.-...+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 5678999999999999998776 233333333 2566777777777677788999999988887654322 1133467
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhcccc-HHHHHHHhhccCCChHHHHHHHHHHHHhccCCC-
Q 021242 91 DAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDI-IHSLIEIIKTRNSPLRSVKDALKALFGIALYPL- 168 (315)
Q Consensus 91 ~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~-i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~- 168 (315)
|.|+..+.+ +...++..|..+|..+...-... ..+ ++.+...+. +.++.++..++..|..+...-.
T Consensus 97 ~~Ll~~~~~----~~~~i~~~a~~~L~~i~~~~~~~------~~~~~~~l~~~~~--~Kn~~vR~~~~~~l~~~l~~~~~ 164 (228)
T PF12348_consen 97 PPLLKKLGD----SKKFIREAANNALDAIIESCSYS------PKILLEILSQGLK--SKNPQVREECAEWLAIILEKWGS 164 (228)
T ss_dssp HHHHHGGG-------HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT---S-HHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHcc----ccHHHHHHHHHHHHHHHHHCCcH------HHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHHHHccc
Confidence 888888876 56678888889999887643310 122 455555666 5689999999988888765322
Q ss_pred cHHHHHh----hCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc
Q 021242 169 NRYQVIA----LGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG 207 (315)
Q Consensus 169 ~~~~i~~----~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~ 207 (315)
....+-. ...++.+..++. |+++++++.|-.++..+..
T Consensus 165 ~~~~l~~~~~~~~l~~~l~~~l~-D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 165 DSSVLQKSAFLKQLVKALVKLLS-DADPEVREAARECLWALYS 206 (228)
T ss_dssp --GGG--HHHHHHHHHHHHHHHT-SS-HHHHHHHHHHHHHHHH
T ss_pred hHhhhcccchHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHH
Confidence 1111111 346677788885 7889999998888888854
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0033 Score=60.29 Aligned_cols=232 Identities=16% Similarity=0.070 Sum_probs=146.7
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhcCcccc-hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCC---C----
Q 021242 53 LAEILYSSSHAFQENAAATLLNLSITSR-DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVD---S---- 124 (315)
Q Consensus 53 Lv~lL~~~~~~~~~~a~~~L~~la~~~~-~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~---~---- 124 (315)
|..+..+.|..++..|+..|..|+..-. .+. .....++.+++ ...+++..|...++-.+... .
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~-----~Y~~A~~~lsD----~~e~VR~aAvqlv~v~gn~~p~~~e~e~ 273 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGFKLSKA-----CYSRAVKHLSD----DYEDVRKAAVQLVSVWGNRCPAPLERES 273 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccccccHH-----HHHHHHHHhcc----hHHHHHHHHHHHHHHHHhcCCCcccchh
Confidence 7777788888888888888888775322 121 34455677775 56677777766666655321 0
Q ss_pred chhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhcc-CC------------------------------------
Q 021242 125 YRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL-YP------------------------------------ 167 (315)
Q Consensus 125 ~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~-~~------------------------------------ 167 (315)
+...+.+ .++..+.+.+. +.+..++..|+++|..+-. +.
T Consensus 274 ~e~kl~D--~aF~~vC~~v~--D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSs 349 (823)
T KOG2259|consen 274 EEEKLKD--AAFSSVCRAVR--DRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSS 349 (823)
T ss_pred hhhhhHH--HHHHHHHHHHh--cCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCccc
Confidence 1111111 23566666666 4455666666666554432 10
Q ss_pred --------------CcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCC
Q 021242 168 --------------LNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTG 233 (315)
Q Consensus 168 --------------~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~ 233 (315)
+.-..++..|+=..++.-|. +..-+++..|...++.|+.+..+-. ...+.-|++++.+.
T Consensus 350 Gk~~~advpsee~d~~~~siI~sGACGA~VhGlE-DEf~EVR~AAV~Sl~~La~ssP~FA----~~aldfLvDMfNDE-- 422 (823)
T KOG2259|consen 350 GKEWNADVPSEEDDEEEESIIPSGACGALVHGLE-DEFYEVRRAAVASLCSLATSSPGFA----VRALDFLVDMFNDE-- 422 (823)
T ss_pred CccccccCchhhccccccccccccccceeeeech-HHHHHHHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHhccH--
Confidence 01112333444455555553 3344678888888888876432211 23467889999864
Q ss_pred CChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhCCCCCCccchHHHHhhh
Q 021242 234 SGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDDGNMNITMTNEEILKKL 313 (315)
Q Consensus 234 ~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~~~~~i~~~~~~~~~~~ 313 (315)
...++..|..+|..|+.+. .++ ..-++.++..+.+.++.+|+....+|++.+-+..-.|.|.-.+.+|.+
T Consensus 423 -~~~VRL~ai~aL~~Is~~l-------~i~--eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m~v~~lL~~L 492 (823)
T KOG2259|consen 423 -IEVVRLKAIFALTMISVHL-------AIR--EEQLRQILESLEDRSVDVREALRELLKNARVSDLECIDMCVAHLLKNL 492 (823)
T ss_pred -HHHHHHHHHHHHHHHHHHh-------eec--HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 7899999999999997642 123 445677888889999999999999999887766656667666666655
Q ss_pred c
Q 021242 314 K 314 (315)
Q Consensus 314 ~ 314 (315)
+
T Consensus 493 ~ 493 (823)
T KOG2259|consen 493 G 493 (823)
T ss_pred h
Confidence 3
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.079 Score=52.22 Aligned_cols=253 Identities=15% Similarity=0.126 Sum_probs=132.1
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc--------
Q 021242 9 RSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR-------- 80 (315)
Q Consensus 9 ~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~-------- 80 (315)
..+...|++++.-++.-|+.+|.+++.. +-.| ...|.+.++++..++-++..|+.+...+-+..+
T Consensus 110 NslknDL~s~nq~vVglAL~alg~i~s~-Emar------dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~ 182 (866)
T KOG1062|consen 110 NSLKNDLNSSNQYVVGLALCALGNICSP-EMAR------DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVI 182 (866)
T ss_pred HHHHhhccCCCeeehHHHHHHhhccCCH-HHhH------HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhH
Confidence 4566777888888888888888888743 2222 345777788888888888888777766554421
Q ss_pred --hhhhh--hc----CchHHHHHHHhcCCCC--CCHHHHHHHHHHHHHhhcCC---Cc-----hhhhhhccccHHHHHHH
Q 021242 81 --DSLMS--TR----GLLDAISHVLRHHSTS--TSSAAVQSSAATLHSLLVVD---SY-----RPIIGAKRDIIHSLIEI 142 (315)
Q Consensus 81 --~~~i~--~~----~~i~~L~~lL~~~~~~--~~~~~~~~a~~~L~~Ls~~~---~~-----~~~i~~~~g~i~~Lv~l 142 (315)
++.+. .+ +++..+.++++..+.. .-.+....-..+|.+++... +. .+.+.+. - +-.++.+
T Consensus 183 ~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi-~-iLrlLri 260 (866)
T KOG1062|consen 183 AFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQI-R-ILRLLRI 260 (866)
T ss_pred HHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHH-H-HHHHHHH
Confidence 11111 12 2455666666531000 00112234556677776422 11 1122211 1 2234455
Q ss_pred hhccCCChHHHHHHHHHHHHhccCCC---cHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcC-hhhH------
Q 021242 143 IKTRNSPLRSVKDALKALFGIALYPL---NRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGC-EESV------ 212 (315)
Q Consensus 143 l~~~~~~~~~~~~a~~aL~~Ls~~~~---~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~-~~~~------ 212 (315)
|. .++++......-.|...+.+.+ |....+=...|..+..+. ++.++++.|..+|...-.+ +.|.
T Consensus 261 LG--q~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~---~~~~LrvlainiLgkFL~n~d~NirYvaLn 335 (866)
T KOG1062|consen 261 LG--QNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIR---SNSGLRVLAINILGKFLLNRDNNIRYVALN 335 (866)
T ss_pred hc--CCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhcc---CCchHHHHHHHHHHHHhcCCccceeeeehh
Confidence 55 4566666666666666666432 221111122233322221 2344455555444433221 1111
Q ss_pred ----------HHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHH
Q 021242 213 ----------DEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAK 282 (315)
Q Consensus 213 ----------~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~ 282 (315)
.++.++. ..+++.|++. +..+|..|...++.|.... ..+.|+ +.|+..+.+.++.
T Consensus 336 ~L~r~V~~d~~avqrHr--~tIleCL~Dp---D~SIkrralELs~~lvn~~---Nv~~mv-------~eLl~fL~~~d~~ 400 (866)
T KOG1062|consen 336 MLLRVVQQDPTAVQRHR--STILECLKDP---DVSIKRRALELSYALVNES---NVRVMV-------KELLEFLESSDED 400 (866)
T ss_pred hHHhhhcCCcHHHHHHH--HHHHHHhcCC---cHHHHHHHHHHHHHHhccc---cHHHHH-------HHHHHHHHhccHH
Confidence 1111111 4556677764 7888888988888887532 223443 3677788887888
Q ss_pred HHHHHHHH
Q 021242 283 GKTKAVAL 290 (315)
Q Consensus 283 ~k~~A~~~ 290 (315)
.|...+.-
T Consensus 401 ~k~~~as~ 408 (866)
T KOG1062|consen 401 FKADIASK 408 (866)
T ss_pred HHHHHHHH
Confidence 87766653
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.041 Score=51.46 Aligned_cols=197 Identities=19% Similarity=0.093 Sum_probs=125.6
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhh
Q 021242 7 TVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMST 86 (315)
Q Consensus 7 ~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~ 86 (315)
.+..|++.|.+.++.++..++.+|..+- ..+..+.|+.+|++.++.++..++.++... .
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i~-----------~~~a~~~L~~~L~~~~p~vR~aal~al~~r----------~ 145 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGWLG-----------GRQAEPWLEPLLAASEPPGRAIGLAALGAH----------R 145 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcCC-----------chHHHHHHHHHhcCCChHHHHHHHHHHHhh----------c
Confidence 4899999999999899999999997543 234578899999999999998888777541 2
Q ss_pred cCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccC
Q 021242 87 RGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALY 166 (315)
Q Consensus 87 ~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~ 166 (315)
.+..+.+..+|++ .++.++..++.+|..+- . ...++.|...+. +.++.++..|+++|..+-.
T Consensus 146 ~~~~~~L~~~L~d----~d~~Vra~A~raLG~l~----------~-~~a~~~L~~al~--d~~~~VR~aA~~al~~lG~- 207 (410)
T TIGR02270 146 HDPGPALEAALTH----EDALVRAAALRALGELP----------R-RLSESTLRLYLR--DSDPEVRFAALEAGLLAGS- 207 (410)
T ss_pred cChHHHHHHHhcC----CCHHHHHHHHHHHHhhc----------c-ccchHHHHHHHc--CCCHHHHHHHHHHHHHcCC-
Confidence 3356788888986 78889989988888743 2 233677888887 5688999999999876643
Q ss_pred CCcHHHHH---hhCCcHH---HHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHh----c---CCHHHHHHHhhcCCC
Q 021242 167 PLNRYQVI---ALGGVQP---LFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKK----C---CGIGVLVDLLDLGTG 233 (315)
Q Consensus 167 ~~~~~~i~---~~g~v~~---L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~----~---~~i~~Lv~ll~~~~~ 233 (315)
++-...+. ...+.+. +...+.--++ ..+..-|..|...+..+..... . ..++.|+..+.+
T Consensus 208 ~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~----~~a~~~L~~ll~d~~vr~~a~~AlG~lg~p~av~~L~~~l~d--- 280 (410)
T TIGR02270 208 RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGG----PDAQAWLRELLQAAATRREALRAVGLVGDVEAAPWCLEAMRE--- 280 (410)
T ss_pred HhHHHHHHHHHhccCccHHHHHHHHHHhCCc----hhHHHHHHHHhcChhhHHHHHHHHHHcCCcchHHHHHHHhcC---
Confidence 22111111 1111111 1111100000 1333444445554443332222 1 247888887764
Q ss_pred CChhHHHHHHHHHHHHhc
Q 021242 234 SGHRVKENAVSALLNLVN 251 (315)
Q Consensus 234 ~~~~~~~~a~~~L~~l~~ 251 (315)
+.....|..++..|+-
T Consensus 281 --~~~aR~A~eA~~~ItG 296 (410)
T TIGR02270 281 --PPWARLAGEAFSLITG 296 (410)
T ss_pred --cHHHHHHHHHHHHhhC
Confidence 3477788888888863
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00078 Score=40.74 Aligned_cols=39 Identities=31% Similarity=0.358 Sum_probs=34.7
Q ss_pred hhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHh
Q 021242 209 EESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLV 250 (315)
Q Consensus 209 ~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~ 250 (315)
++++..+.+.|+++.|++++..+ +..+++.++++|.||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~---~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSE---DEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCC---CHHHHHHHHHHHHHHc
Confidence 34778889999999999999965 8999999999999986
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. |
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.036 Score=53.92 Aligned_cols=182 Identities=14% Similarity=0.125 Sum_probs=119.2
Q ss_pred hhhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCC-CHHHHHHHHHHHHhcCcccch
Q 021242 3 VKRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSS-SHAFQENAAATLLNLSITSRD 81 (315)
Q Consensus 3 ~~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~la~~~~~ 81 (315)
.-+..+|+|++.|..++|.++-.|+..|+.||..+|.|.-.+ -|.+.+++... +.=+....+....+|+--++
T Consensus 178 Alr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEP- 251 (877)
T KOG1059|consen 178 ALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEP- 251 (877)
T ss_pred hHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCc-
Confidence 346789999999999999999999999999999998866544 58888888653 33355666677777764433
Q ss_pred hhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHH--Hhh-cCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHH
Q 021242 82 SLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLH--SLL-VVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALK 158 (315)
Q Consensus 82 ~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~--~Ls-~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~ 158 (315)
++ ....+++|..++.+ ..-..+...+..++- +++ +.++.-..+. -++..|-.++. +.|+..+--++-
T Consensus 252 RL--gKKLieplt~li~s---T~AmSLlYECvNTVVa~s~s~g~~d~~asiq---LCvqKLr~fie--dsDqNLKYlgLl 321 (877)
T KOG1059|consen 252 RL--GKKLIEPITELMES---TVAMSLLYECVNTVVAVSMSSGMSDHSASIQ---LCVQKLRIFIE--DSDQNLKYLGLL 321 (877)
T ss_pred hh--hhhhhhHHHHHHHh---hHHHHHHHHHHHHheeehhccCCCCcHHHHH---HHHHHHhhhhh--cCCccHHHHHHH
Confidence 22 12357888888875 112222223333322 222 2223333333 34788888888 568888888888
Q ss_pred HHHHhcc-CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHh
Q 021242 159 ALFGIAL-YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIA 206 (315)
Q Consensus 159 aL~~Ls~-~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~ 206 (315)
+++-+.. +|.. ++ .--..++++|. +.+.+++-.|+..|.-+-
T Consensus 322 am~KI~ktHp~~----Vq-a~kdlIlrcL~-DkD~SIRlrALdLl~gmV 364 (877)
T KOG1059|consen 322 AMSKILKTHPKA----VQ-AHKDLILRCLD-DKDESIRLRALDLLYGMV 364 (877)
T ss_pred HHHHHhhhCHHH----HH-HhHHHHHHHhc-cCCchhHHHHHHHHHHHh
Confidence 8888775 3321 11 11235678884 678888888888777653
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.025 Score=53.49 Aligned_cols=281 Identities=16% Similarity=0.153 Sum_probs=172.4
Q ss_pred hhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCc----------------------h-----------hhHHHHhC-C-
Q 021242 4 KRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDA----------------------E-----------IRPMISEA-G- 48 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~----------------------~-----------~~~~i~~~-g- 48 (315)
.+.-+++.+..++.++-.+|..|++.+-++++-.. . -.+.++.. .
T Consensus 82 ~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~ 161 (675)
T KOG0212|consen 82 LEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESAS 161 (675)
T ss_pred HHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhcccccc
Confidence 35667777777777777777777766665553221 0 11122211 1
Q ss_pred --CHHHHHHHH----cCCCHHHHHHHHHHHHhcCcccchhhh-hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc
Q 021242 49 --SIPYLAEIL----YSSSHAFQENAAATLLNLSITSRDSLM-STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV 121 (315)
Q Consensus 49 --~i~~Lv~lL----~~~~~~~~~~a~~~L~~la~~~~~~~i-~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~ 121 (315)
.++.++++| ...++..|..-+.-|..+-.-++.+.+ .-+..++-|..+|.+ ++++++..+-.++.++-.
T Consensus 162 tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD----~s~eVr~~~~t~l~~fL~ 237 (675)
T KOG0212|consen 162 TFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSD----SSDEVRTLTDTLLSEFLA 237 (675)
T ss_pred ccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcC----CcHHHHHHHHHHHHHHHH
Confidence 144444444 445677777777777666555554433 245567778888886 678888766666666542
Q ss_pred -CCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHH
Q 021242 122 -VDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASA 200 (315)
Q Consensus 122 -~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~ 200 (315)
... +....+.+..++.++.-+. ..++.++..|+.-+..+..-+.......-.|++..+++++.+.+...+.+.+..
T Consensus 238 eI~s-~P~s~d~~~~i~vlv~~l~--ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~ 314 (675)
T KOG0212|consen 238 EIRS-SPSSMDYDDMINVLVPHLQ--SSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQM 314 (675)
T ss_pred HHhc-CccccCcccchhhcccccc--CCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHH
Confidence 222 2222233455788888888 447888888887777777644433333447888888888853322234444332
Q ss_pred ---HHHHHhcChhhHHHHHhcCC-HHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHH
Q 021242 201 ---VIAQIAGCEESVDEFKKCCG-IGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVA 276 (315)
Q Consensus 201 ---~L~~L~~~~~~~~~i~~~~~-i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll 276 (315)
.|..+.+.+...++ ++.|. +..+.+.+.+. ..+.|-.+..-+..+-...+. ++..+....++.|+.-+
T Consensus 315 ~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~---~~~tri~~L~Wi~~l~~~~p~----ql~~h~~~if~tLL~tL 386 (675)
T KOG0212|consen 315 VNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDD---REETRIAVLNWIILLYHKAPG----QLLVHNDSIFLTLLKTL 386 (675)
T ss_pred HHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcc---hHHHHHHHHHHHHHHHhhCcc----hhhhhccHHHHHHHHhh
Confidence 34445555555544 45553 77888888864 677777777666666543332 33333467888888888
Q ss_pred hhCCHHHHHHHHHHHHHHhhCCC
Q 021242 277 QNGSAKGKTKAVALLKILVDDGN 299 (315)
Q Consensus 277 ~~~~~~~k~~A~~~L~~l~~~~~ 299 (315)
.+.+..|...+-.++..+..+.+
T Consensus 387 sd~sd~vvl~~L~lla~i~~s~~ 409 (675)
T KOG0212|consen 387 SDRSDEVVLLALSLLASICSSSN 409 (675)
T ss_pred cCchhHHHHHHHHHHHHHhcCcc
Confidence 88888888888888887765543
|
|
| >KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.011 Score=59.66 Aligned_cols=138 Identities=13% Similarity=0.130 Sum_probs=112.6
Q ss_pred HHHHHHHHHHhhc-CCCchhhhhhc---cccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHH
Q 021242 109 VQSSAATLHSLLV-VDSYRPIIGAK---RDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFS 184 (315)
Q Consensus 109 ~~~a~~~L~~Ls~-~~~~~~~i~~~---~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~ 184 (315)
.+.+..+|.|+.. +++-..+++.. -|.++.++..+.. .++++++.-|+.++.-+..+.+....++..|.+..|+.
T Consensus 1742 v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~-~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~ 1820 (2235)
T KOG1789|consen 1742 VLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRC-RKHPKLQILALQVILLATANKECVTDLATCNVLTTLLT 1820 (2235)
T ss_pred HHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHH-cCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHH
Confidence 3568889999874 67666666542 2556788888876 47889999999999988888888899999999999999
Q ss_pred HHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhc
Q 021242 185 LVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVN 251 (315)
Q Consensus 185 lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~ 251 (315)
+|. +-++.++.++.+|-.|++.++...+-.+.||+..+.+++-.. .+...+.++...|..+..
T Consensus 1821 lLH--S~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~--~~~QqRAqaAeLlaKl~A 1883 (2235)
T KOG1789|consen 1821 LLH--SQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLT--NSDQQRAQAAELLAKLQA 1883 (2235)
T ss_pred HHh--cChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhcc--CcHHHHHHHHHHHHHhhh
Confidence 995 467889999999999999988777777899988888888754 377888888888888864
|
|
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.099 Score=46.59 Aligned_cols=282 Identities=13% Similarity=0.120 Sum_probs=169.7
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHH--HHHHcCCCHHHHHHHHHHHHhcCcccc--hh
Q 021242 7 TVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYL--AEILYSSSHAFQENAAATLLNLSITSR--DS 82 (315)
Q Consensus 7 ~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L--v~lL~~~~~~~~~~a~~~L~~la~~~~--~~ 82 (315)
-.+.++..+..++-++...|.+.|..++.. +..-..+.+......+ +.+--..+.-++-.....+..+..-.+ -.
T Consensus 129 ilklildcIggeddeVAkAAiesikrialf-paaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesan 207 (524)
T KOG4413|consen 129 ILKLILDCIGGEDDEVAKAAIESIKRIALF-PAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESAN 207 (524)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-HHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHh
Confidence 345667777778888999999999999865 6667777765554443 222222333344444555544443332 22
Q ss_pred hhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHH----H
Q 021242 83 LMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDAL----K 158 (315)
Q Consensus 83 ~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~----~ 158 (315)
.....|.+..|..=++- ..+.-+..++......|+..+..+..+.+ .|+|..+.+++.-.+.+|--...++ +
T Consensus 208 eckkSGLldlLeaElkG---teDtLVianciElvteLaeteHgreflaQ-eglIdlicnIIsGadsdPfekfralmgfgk 283 (524)
T KOG4413|consen 208 ECKKSGLLDLLEAELKG---TEDTLVIANCIELVTELAETEHGREFLAQ-EGLIDLICNIISGADSDPFEKFRALMGFGK 283 (524)
T ss_pred HhhhhhHHHHHHHHhcC---CcceeehhhHHHHHHHHHHHhhhhhhcch-hhHHHHHHHHhhCCCCCcHHHHHHHHHHHH
Confidence 34577888888888873 13445567888999999998888888777 5889999999873223333222222 3
Q ss_pred HHHHhccCCCcHHHHHhh--CCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCC--HHHHHHHhhcCCCC
Q 021242 159 ALFGIALYPLNRYQVIAL--GGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCG--IGVLVDLLDLGTGS 234 (315)
Q Consensus 159 aL~~Ls~~~~~~~~i~~~--g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~--i~~Lv~ll~~~~~~ 234 (315)
.+.+.+..+-.-..++++ -++.-.++++. ..++..++.|..++..|.++.+|.+.+...|- ...++.-..+. .
T Consensus 284 ffgkeaimdvseeaicealiiaidgsfEmiE-mnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdq--n 360 (524)
T KOG4413|consen 284 FFGKEAIMDVSEEAICEALIIAIDGSFEMIE-MNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQ--N 360 (524)
T ss_pred HhcchHHhhcCHHHHHHHHHHHHHhhHHhhh-cCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcc--c
Confidence 344433322222233322 23333445554 34677889999999999999999998887763 44444333222 1
Q ss_pred ChhHHHHHHHHHHHHhccCC----------H--HHHHHHHHH-----ccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhh
Q 021242 235 GHRVKENAVSALLNLVNFGG----------E--RAAEEVKEM-----AMQVADGIADVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 235 ~~~~~~~a~~~L~~l~~~~~----------~--~~~~~i~~~-----~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
...-++.++.+|.+++..-. + +.+..+... +..-...+..+++.+.|+++-.|-+.+..+..
T Consensus 361 ahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaa 439 (524)
T KOG4413|consen 361 AHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAA 439 (524)
T ss_pred ccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHc
Confidence 34556677888888874211 1 111111110 00223455677888899998888777666543
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0011 Score=43.17 Aligned_cols=55 Identities=24% Similarity=0.179 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 021242 20 EQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNL 75 (315)
Q Consensus 20 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l 75 (315)
|.+|..|+++|..++...+..-.. ....++|.|+.+|+++++++|..|+++|.++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 578999999999988664433333 4567899999999998899999999999874
|
... |
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.11 Score=51.25 Aligned_cols=257 Identities=16% Similarity=0.162 Sum_probs=144.2
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc------h
Q 021242 8 VRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR------D 81 (315)
Q Consensus 8 i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~------~ 81 (315)
.+.+-.+|.+....+..+|+.++.++...+.. .+.. ++..|=.++++....+|..|.++|..+|...+ +
T Consensus 247 ~~fl~s~l~~K~emV~~EaArai~~l~~~~~r---~l~p--avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN 321 (865)
T KOG1078|consen 247 FPFLESCLRHKSEMVIYEAARAIVSLPNTNSR---ELAP--AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCN 321 (865)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHhhccccCHh---hcch--HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccc
Confidence 45677777888889999999999999755432 2222 78888888888889999999999988876532 1
Q ss_pred ----hhhhhc---CchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhh--cCCCchhhhhh------------ccccHHHHH
Q 021242 82 ----SLMSTR---GLLDAISHVLRHHSTSTSSAAVQSSAATLHSLL--VVDSYRPIIGA------------KRDIIHSLI 140 (315)
Q Consensus 82 ----~~i~~~---~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls--~~~~~~~~i~~------------~~g~i~~Lv 140 (315)
.++-+. -.-.++..+|+. ++......-...+.+.. ..++.+..+.+ ..+.+..|.
T Consensus 322 ~elE~lItd~NrsIat~AITtLLKT----G~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~ 397 (865)
T KOG1078|consen 322 LDLESLITDSNRSIATLAITTLLKT----GTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLS 397 (865)
T ss_pred hhHHhhhcccccchhHHHHHHHHHh----cchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHH
Confidence 122111 134455666665 33333333333333332 13333322211 123344555
Q ss_pred HHhhccCCChHHHHHHHHHHHHhcc-CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcC-hhhHHHHHhc
Q 021242 141 EIIKTRNSPLRSVKDALKALFGIAL-YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGC-EESVDEFKKC 218 (315)
Q Consensus 141 ~ll~~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~ 218 (315)
.+|+. .|..+.+.....++..+.. .++.|... +..|..++.+ -+....+..+|+-|-.. |. .....
T Consensus 398 ~~Lr~-eGg~e~K~aivd~Ii~iie~~pdsKe~~-----L~~LCefIED---ce~~~i~~rILhlLG~EgP~---a~~Ps 465 (865)
T KOG1078|consen 398 NMLRE-EGGFEFKRAIVDAIIDIIEENPDSKERG-----LEHLCEFIED---CEFTQIAVRILHLLGKEGPK---APNPS 465 (865)
T ss_pred HHHHh-ccCchHHHHHHHHHHHHHHhCcchhhHH-----HHHHHHHHHh---ccchHHHHHHHHHHhccCCC---CCCcc
Confidence 55554 3455555555555555544 44444332 3455566642 23445556666655321 10 00000
Q ss_pred CCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhh
Q 021242 219 CGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 219 ~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
.-|......+-- ++..++..|+.+|+.+.. +.+. .. ..+.-.|.+.+-+.+..+|+.|...|+.+.+
T Consensus 466 kyir~iyNRviL---En~ivRaaAv~alaKfg~-~~~~-----l~--~sI~vllkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 466 KYIRFIYNRVIL---ENAIVRAAAVSALAKFGA-QDVV-----LL--PSILVLLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred hhhHHHhhhhhh---hhhhhHHHHHHHHHHHhc-CCCC-----cc--ccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 112222221111 156778888888888863 2211 22 3344555678888899999999999999983
|
|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.2 Score=48.98 Aligned_cols=260 Identities=16% Similarity=0.175 Sum_probs=131.9
Q ss_pred hhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCC-CHHHHHHHHHHHHhcCccc-c-
Q 021242 4 KRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSS-SHAFQENAAATLLNLSITS-R- 80 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~la~~~-~- 80 (315)
-+-.+..+-..|.+.++-.+.-|+.++.++... +.++.+. .-||.|+. +.. .+-++..|+-+|..|-... +
T Consensus 109 ~klvin~iknDL~srn~~fv~LAL~~I~niG~r--e~~ea~~--~DI~KlLv--S~~~~~~vkqkaALclL~L~r~spDl 182 (938)
T KOG1077|consen 109 MKLVINSIKNDLSSRNPTFVCLALHCIANIGSR--EMAEAFA--DDIPKLLV--SGSSMDYVKQKAALCLLRLFRKSPDL 182 (938)
T ss_pred HHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccH--hHHHHhh--hhhHHHHh--CCcchHHHHHHHHHHHHHHHhcCccc
Confidence 345677788888888888888899998888654 3444433 23555543 333 3345566666665555442 1
Q ss_pred -h------hhh--h---hcC---chHHHHHHH-hcCCCCCCHHHHH---HHHHHHHHhhcCCC-c-hhhh---hhccccH
Q 021242 81 -D------SLM--S---TRG---LLDAISHVL-RHHSTSTSSAAVQ---SSAATLHSLLVVDS-Y-RPII---GAKRDII 136 (315)
Q Consensus 81 -~------~~i--~---~~~---~i~~L~~lL-~~~~~~~~~~~~~---~a~~~L~~Ls~~~~-~-~~~i---~~~~g~i 136 (315)
+ +++ . ..| +...|+..+ +. ..++.+. .+..-|.+++.... . .+-. .-+.=+.
T Consensus 183 ~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~----~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~ 258 (938)
T KOG1077|consen 183 VNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKK----NPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQ 258 (938)
T ss_pred cChhhHHHHHHHHhCccccceeeehHHHHHHHHHc----CCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHH
Confidence 1 111 0 112 123334444 32 3334333 23333444432211 1 1100 0001112
Q ss_pred HHHHHHhhcc--CCChHHH---HHHHHHHHHhccCCCcHHHHHhh-------------------------CCcHHHHHHH
Q 021242 137 HSLIEIIKTR--NSPLRSV---KDALKALFGIALYPLNRYQVIAL-------------------------GGVQPLFSLV 186 (315)
Q Consensus 137 ~~Lv~ll~~~--~~~~~~~---~~a~~aL~~Ls~~~~~~~~i~~~-------------------------g~v~~L~~lL 186 (315)
-.++.+|+.. ..|+..+ -+++..+.|.+..+...+.+.+. .++..|-++|
T Consensus 259 vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fl 338 (938)
T KOG1077|consen 259 VKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFL 338 (938)
T ss_pred HHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHh
Confidence 2444444421 2233322 23445555555422111111111 2233344455
Q ss_pred hcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHcc
Q 021242 187 VNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAM 266 (315)
Q Consensus 187 ~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~ 266 (315)
. +.+..++-.|+..++.|++++....++..+ ...++..|++. .+..++..++..|+.+|..+ .++.|++
T Consensus 339 s-~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkte--rDvSirrravDLLY~mcD~~---Nak~IV~--- 407 (938)
T KOG1077|consen 339 S-HRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTE--RDVSIRRRAVDLLYAMCDVS---NAKQIVA--- 407 (938)
T ss_pred h-cccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccc--cchHHHHHHHHHHHHHhchh---hHHHHHH---
Confidence 3 345556666777777777776666666544 67777888853 37788999999999998643 3355553
Q ss_pred CcHHHHHHHHhhCCHHHHHHHH
Q 021242 267 QVADGIADVAQNGSAKGKTKAV 288 (315)
Q Consensus 267 g~~~~L~~ll~~~~~~~k~~A~ 288 (315)
.|+..+.+.++..|+.-.
T Consensus 408 ----elLqYL~tAd~sireeiv 425 (938)
T KOG1077|consen 408 ----ELLQYLETADYSIREEIV 425 (938)
T ss_pred ----HHHHHHhhcchHHHHHHH
Confidence 355555666666665443
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.18 Score=49.65 Aligned_cols=250 Identities=16% Similarity=0.208 Sum_probs=146.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhccC--chhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc-hhh-
Q 021242 8 VRSLVTKLGSVSEQTRAEALAELRLLSKHD--AEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR-DSL- 83 (315)
Q Consensus 8 i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~-~~~- 83 (315)
+...+-.|++.++.+|.+|+..+..++.-= ..--+.+...|.| |.+.|...++++.--.+.+|..+...-. .+.
T Consensus 801 ~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylgeeypEvLgsILgAikaI~nvigm~km~ 878 (1172)
T KOG0213|consen 801 CSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMT 878 (1172)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCcccHHHHHHHHHHHHHHHHhccccccC
Confidence 344566788999999999999999988541 1223455556653 7788888888877665565544432211 111
Q ss_pred hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc-CCCc---hhhhhhccccHHHHHHHhhccCCChHHHHHHHHH
Q 021242 84 MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV-VDSY---RPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKA 159 (315)
Q Consensus 84 i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~-~~~~---~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~a 159 (315)
-=-.+.+|.|.-+|++ -+..+++++...+..++. .++. |.-++-+ -.|+.+|+.+ ...++..|..+
T Consensus 879 pPi~dllPrltPILkn----rheKVqen~IdLvg~IadrgpE~v~aREWMRIc----feLlelLkah--kK~iRRaa~nT 948 (1172)
T KOG0213|consen 879 PPIKDLLPRLTPILKN----RHEKVQENCIDLVGTIADRGPEYVSAREWMRIC----FELLELLKAH--KKEIRRAAVNT 948 (1172)
T ss_pred CChhhhcccchHhhhh----hHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHH----HHHHHHHHHH--HHHHHHHHHhh
Confidence 0124679999999997 567888899888888885 3332 3333332 2456666643 56899999999
Q ss_pred HHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHH---HHHHHHHHhcChhhHHHHHhcCC----HHHHHHHhhcCC
Q 021242 160 LFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVED---ASAVIAQIAGCEESVDEFKKCCG----IGVLVDLLDLGT 232 (315)
Q Consensus 160 L~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~---a~~~L~~L~~~~~~~~~i~~~~~----i~~Lv~ll~~~~ 232 (315)
+..++. .+ |=-..|..+|. +..+++. .|.++. ...+.+..| +|.|+.--...
T Consensus 949 fG~Iak------aI---GPqdVLatLln---nLkvqeRq~RvcTtva--------IaIVaE~c~pFtVLPalmneYrtP- 1007 (1172)
T KOG0213|consen 949 FGYIAK------AI---GPQDVLATLLN---NLKVQERQNRVCTTVA--------IAIVAETCGPFTVLPALMNEYRTP- 1007 (1172)
T ss_pred hhHHHH------hc---CHHHHHHHHHh---cchHHHHHhchhhhhh--------hhhhhhhcCchhhhHHHHhhccCc-
Confidence 998874 11 33344555553 2233332 222222 122223333 34433322222
Q ss_pred CCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhh
Q 021242 233 GSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 233 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
...+|.-.+.+++.+..--.+..+..+ --+.|.|-+-+-+.|+.-|+.|..+.+.++=
T Consensus 1008 --e~nVQnGVLkalsf~FeyigemskdYi----yav~PlleDAlmDrD~vhRqta~~~I~Hl~L 1065 (1172)
T KOG0213|consen 1008 --EANVQNGVLKALSFMFEYIGEMSKDYI----YAVTPLLEDALMDRDLVHRQTAMNVIKHLAL 1065 (1172)
T ss_pred --hhHHHHhHHHHHHHHHHHHHHHhhhHH----HHhhHHHHHhhccccHHHHHHHHHHHHHHhc
Confidence 445665455554444321001111222 1255666677778899999999999888863
|
|
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0028 Score=48.06 Aligned_cols=72 Identities=18% Similarity=0.198 Sum_probs=61.9
Q ss_pred hhhhHHHHHHHh-CCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 021242 4 KRRTVRSLVTKL-GSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNL 75 (315)
Q Consensus 4 ~~~~i~~Lv~~L-~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l 75 (315)
...-+..|++.| .+.++....-|+.-|..++...|..|..+.+.|+=+.++.++.++|++++..|+.+++.+
T Consensus 41 ~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 41 NFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp GGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 345677899999 455889999999999999999999898888899999999999999999999999998765
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.019 Score=49.11 Aligned_cols=182 Identities=15% Similarity=0.144 Sum_probs=102.6
Q ss_pred CCHHHHHHHHHHHHHhhcCC---Cchhhhhh-ccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHhhCCc
Q 021242 104 TSSAAVQSSAATLHSLLVVD---SYRPIIGA-KRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGV 179 (315)
Q Consensus 104 ~~~~~~~~a~~~L~~Ls~~~---~~~~~i~~-~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v 179 (315)
.+=+.+..+...|..+.... .....+.. -..++..+...+.+ ....+...|+.++..|+..-.....-.-...+
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d--~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSD--LRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-H--H---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 45566778888888887533 22222221 12334455666552 24567888999999988743333222234667
Q ss_pred HHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHH
Q 021242 180 QPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAE 259 (315)
Q Consensus 180 ~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 259 (315)
|.|++.+. ++...+++.|..+|..+...-..-..+. .+.+...+.+. ++.++..++..+..+....+.. ..
T Consensus 97 ~~Ll~~~~-~~~~~i~~~a~~~L~~i~~~~~~~~~~~----~~~l~~~~~~K---n~~vR~~~~~~l~~~l~~~~~~-~~ 167 (228)
T PF12348_consen 97 PPLLKKLG-DSKKFIREAANNALDAIIESCSYSPKIL----LEILSQGLKSK---NPQVREECAEWLAIILEKWGSD-SS 167 (228)
T ss_dssp HHHHHGGG----HHHHHHHHHHHHHHHTTS-H--HHH----HHHHHHHTT-S----HHHHHHHHHHHHHHHTT------G
T ss_pred HHHHHHHc-cccHHHHHHHHHHHHHHHHHCCcHHHHH----HHHHHHHHhCC---CHHHHHHHHHHHHHHHHHccch-Hh
Confidence 88888885 4556678888888888866422111111 24444556655 8999999999888887644310 01
Q ss_pred HHHHHc--cCcHHHHHHHHhhCCHHHHHHHHHHHHHHhh
Q 021242 260 EVKEMA--MQVADGIADVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 260 ~i~~~~--~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
.+-... ....+.+...+.+.++.||+.|..++..+..
T Consensus 168 ~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 168 VLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp GG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred hhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 111100 2367778888999999999999998887743
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.014 Score=43.01 Aligned_cols=69 Identities=17% Similarity=0.210 Sum_probs=54.5
Q ss_pred CHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 021242 220 GIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILV 295 (315)
Q Consensus 220 ~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~ 295 (315)
.++.++..+.+. +.+++..|+.+|+++++... .+++.+-..++..|..+..+.++.||..|.-+-+.+.
T Consensus 28 Il~pVL~~~~D~---d~rVRy~AcEaL~ni~k~~~----~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 28 ILPPVLKCFDDQ---DSRVRYYACEALYNISKVAR----GEILPYFNEIFDALCKLSADPDENVRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHHcCCC---cHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhc
Confidence 478888888865 89999999999999987543 3455434678999999999999999998876665554
|
|
| >KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.34 Score=45.36 Aligned_cols=189 Identities=14% Similarity=0.135 Sum_probs=122.9
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhcCcccc-----hhhhhhcCchHHHHHHHhcCC-CCCCHH--HHHHHHHHHHHhhcCCC
Q 021242 53 LAEILYSSSHAFQENAAATLLNLSITSR-----DSLMSTRGLLDAISHVLRHHS-TSTSSA--AVQSSAATLHSLLVVDS 124 (315)
Q Consensus 53 Lv~lL~~~~~~~~~~a~~~L~~la~~~~-----~~~i~~~~~i~~L~~lL~~~~-~~~~~~--~~~~a~~~L~~Ls~~~~ 124 (315)
+..+++..+.+-+.+|+-..-.+..+++ ++.+.++-|.+.+-++|.+.+ .++.++ .+..+..+|..++..++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 5666776677777888888888887764 456678889999999996432 123333 45567777888887776
Q ss_pred ch--hhhhhccccHHHHHHHhhccCCChH------HHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcch-H
Q 021242 125 YR--PIIGAKRDIIHSLIEIIKTRNSPLR------SVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGI-V 195 (315)
Q Consensus 125 ~~--~~i~~~~g~i~~Lv~ll~~~~~~~~------~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~-~ 195 (315)
-. ..+.+ . ||.|..++... ++++ +...+..+|...+..+.....++..|+++.+.++-.- ++-.. .
T Consensus 96 lAsh~~~v~--~-IP~llev~~~~-~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~-~~~~~d~ 170 (698)
T KOG2611|consen 96 LASHEEMVS--R-IPLLLEVMSKG-IDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYEL-PDGSHDM 170 (698)
T ss_pred hccCHHHHH--h-hhHHHHHHHhc-CCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhC-CCCchhH
Confidence 42 22332 4 89999998753 4444 7788999999999999999999999999999977642 22222 3
Q ss_pred HHHHHHHHHHhc----ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhc
Q 021242 196 EDASAVIAQIAG----CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVN 251 (315)
Q Consensus 196 ~~a~~~L~~L~~----~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~ 251 (315)
+.++.++-.+.. +++....+... |..+-.-+... +...|-..|.+|..+..
T Consensus 171 alal~Vlll~~~~~~cw~e~~~~flal--i~~va~df~~~---~~a~KfElc~lL~~vl~ 225 (698)
T KOG2611|consen 171 ALALKVLLLLVSKLDCWSETIERFLAL--IAAVARDFAVL---HNALKFELCHLLSAVLS 225 (698)
T ss_pred HHHHHHHHHHHHhcccCcCCHHHHHHH--HHHHHHHHHHh---hhHHHHHHHHHHHHHHh
Confidence 334544444322 33444444322 33333333332 55677778888876543
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.36 Score=46.61 Aligned_cols=266 Identities=16% Similarity=0.184 Sum_probs=149.3
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccC--chhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc-hh
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHD--AEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR-DS 82 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~-~~ 82 (315)
+-|...+..|++..|.+|..|+.....+++-= -.--+.+...|.| |.+-|...+|++.--.+.++..+...-+ +.
T Consensus 604 ~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~ypEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 604 MIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGEDYPEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcccHHHHHHHHHHHHHHhhhhcccc
Confidence 44667788899999999999999998887542 1223456666654 6777877888877766666655543322 21
Q ss_pred h-hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCC-C---chhhhhhccccHHHHHHHhhccCCChHHHHHHH
Q 021242 83 L-MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVD-S---YRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDAL 157 (315)
Q Consensus 83 ~-i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~-~---~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~ 157 (315)
+ -=-.|.+|.|..+|++ .+..+..+....+.-++... + .|.-++-+ -.|+++|+ ..+.+++.+|.
T Consensus 682 mqpPi~~ilP~ltPILrn----kh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIc----feLvd~Lk--s~nKeiRR~A~ 751 (975)
T COG5181 682 MQPPISGILPSLTPILRN----KHQKVVANTIALVGTICMNSPEYIGVREWMRIC----FELVDSLK--SWNKEIRRNAT 751 (975)
T ss_pred cCCchhhccccccHhhhh----hhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHH----HHHHHHHH--HhhHHHHHhhh
Confidence 1 1135789999999986 45566667666666666433 2 23333332 24666777 34678999999
Q ss_pred HHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHH---HHHHHHHHhcChhhHHHHHhcCCHHHHHH-HhhcCCC
Q 021242 158 KALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVED---ASAVIAQIAGCEESVDEFKKCCGIGVLVD-LLDLGTG 233 (315)
Q Consensus 158 ~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~---a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~-ll~~~~~ 233 (315)
.++..++. .+ |--..|..+|. +..+++. .+..+. ...+.+..|--.++. ++.+..-
T Consensus 752 ~tfG~Is~------ai---GPqdvL~~Lln---nLkvqeRq~Rvctsva--------I~iVae~cgpfsVlP~lm~dY~T 811 (975)
T COG5181 752 ETFGCISR------AI---GPQDVLDILLN---NLKVQERQQRVCTSVA--------ISIVAEYCGPFSVLPTLMSDYET 811 (975)
T ss_pred hhhhhHHh------hc---CHHHHHHHHHh---cchHHHHHhhhhhhhh--------hhhhHhhcCchhhHHHHHhcccC
Confidence 99988874 11 22223333442 2223322 222221 122223333222222 3332210
Q ss_pred CChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhCCCCCCccchHHH
Q 021242 234 SGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDDGNMNITMTNEEI 309 (315)
Q Consensus 234 ~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~~~~~i~~~~~~~ 309 (315)
....+|.-.+.+++.+..--.......+ --..|.|-+.+.+.|+.-|+.|..+++.++= ++.=|+..+..
T Consensus 812 Pe~nVQnGvLkam~fmFeyig~~s~dYv----y~itPlleDAltDrD~vhRqta~nvI~Hl~L--nc~gtg~eda~ 881 (975)
T COG5181 812 PEANVQNGVLKAMCFMFEYIGQASLDYV----YSITPLLEDALTDRDPVHRQTAMNVIRHLVL--NCPGTGDEDAA 881 (975)
T ss_pred chhHHHHhHHHHHHHHHHHHHHHHHHHH----HHhhHHHHhhhcccchHHHHHHHHHHHHHhc--CCCCcccHHHH
Confidence 1344554444444433211011111222 2245666677888899999999999888863 24444444443
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.3 Score=46.87 Aligned_cols=251 Identities=16% Similarity=0.102 Sum_probs=144.4
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhh
Q 021242 7 TVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMST 86 (315)
Q Consensus 7 ~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~ 86 (315)
.+..+.+.++-+++..|.....+|..+...... ....-..+.+.++++..+..-+..|...++-+..+..-....+
T Consensus 97 ~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~----~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~ 172 (569)
T KOG1242|consen 97 IIEILLEELDTPSKSVQRAVSTCLPPLVVLSKG----LSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKE 172 (569)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhc----cCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhh
Confidence 466788888888889998888888877533221 1223456788888887777888888888888876654444446
Q ss_pred cCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhcc-CCChHHHHHHHHHHHHhcc
Q 021242 87 RGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTR-NSPLRSVKDALKALFGIAL 165 (315)
Q Consensus 87 ~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~-~~~~~~~~~a~~aL~~Ls~ 165 (315)
.+.+..|...+.+..+.-+++....+..+... .-.... + ..+++.+-.++.+. +....++..|..+...+.+
T Consensus 173 ~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~--~Lg~~~----E-Pyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~ 245 (569)
T KOG1242|consen 173 FGFLDNLSKAIIDKKSALNREAALLAFEAAQG--NLGPPF----E-PYIVPILPSILTNFGDKINKVREAAVEAAKAIMR 245 (569)
T ss_pred hhHHHHHHHHhcccchhhcHHHHHHHHHHHHH--hcCCCC----C-chHHhhHHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 67788888888753222233322122211111 111111 1 24345555555421 2344555554444443332
Q ss_pred --CCCcHHHHHhhCCcHHHHHHHhcCCCcch--HHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHH
Q 021242 166 --YPLNRYQVIALGGVQPLFSLVVNGGRAGI--VEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKEN 241 (315)
Q Consensus 166 --~~~~~~~i~~~g~v~~L~~lL~~~~~~~~--~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~ 241 (315)
++...+. .+|+++.-+.. ..+ ...++..|..++.+....-...-...||.+.+.|-+- .+++++.
T Consensus 246 ~~~~~aVK~-----llpsll~~l~~---~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT---~~evr~a 314 (569)
T KOG1242|consen 246 CLSAYAVKL-----LLPSLLGSLLE---AKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDT---KPEVRKA 314 (569)
T ss_pred hcCcchhhH-----hhhhhHHHHHH---HhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccC---CHHHHHH
Confidence 2211111 13344433321 233 3447778888877654444444456789999988763 8999999
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHH
Q 021242 242 AVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTK 286 (315)
Q Consensus 242 a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~ 286 (315)
+..++.+++.--.. .+|.. .+|.|++.+.+++..+.++
T Consensus 315 ~~~~l~~~~svidN---~dI~~----~ip~Lld~l~dp~~~~~e~ 352 (569)
T KOG1242|consen 315 GIETLLKFGSVIDN---PDIQK----IIPTLLDALADPSCYTPEC 352 (569)
T ss_pred HHHHHHHHHHhhcc---HHHHH----HHHHHHHHhcCcccchHHH
Confidence 99999998764321 23433 5667776666665444443
|
|
| >PF11841 DUF3361: Domain of unknown function (DUF3361) | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.046 Score=43.77 Aligned_cols=119 Identities=14% Similarity=0.155 Sum_probs=88.4
Q ss_pred HHHHhhCCcHHHHHHHhcCCC-----cchHHHHHHHHHHHhcChh-hHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHH
Q 021242 171 YQVIALGGVQPLFSLVVNGGR-----AGIVEDASAVIAQIAGCEE-SVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVS 244 (315)
Q Consensus 171 ~~i~~~g~v~~L~~lL~~~~~-----~~~~~~a~~~L~~L~~~~~-~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~ 244 (315)
..++..||+..|++++.+... .+....++.++..|..+.. +. +..+...|.+++.++... ..+..+.+.|..
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsW-d~l~~~FI~Kia~~Vn~~-~~d~~i~q~sLa 82 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSW-DTLSDSFIKKIASYVNSS-AMDASILQRSLA 82 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCch-hhccHHHHHHHHHHHccc-cccchHHHHHHH
Confidence 467789999999999974332 2445557777777766543 33 344556788888888854 236788999999
Q ss_pred HHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 021242 245 ALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKIL 294 (315)
Q Consensus 245 ~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l 294 (315)
+|-++... ++...+.+-+ +=-++.|+..++..+++++.+|-.+++.|
T Consensus 83 ILEs~Vl~-S~~ly~~V~~--evt~~~Li~hLq~~~~~iq~naiaLinAL 129 (160)
T PF11841_consen 83 ILESIVLN-SPKLYQLVEQ--EVTLESLIRHLQVSNQEIQTNAIALINAL 129 (160)
T ss_pred HHHHHHhC-CHHHHHHHhc--cCCHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999874 4444455544 55689999999999999999999998877
|
|
| >COG5369 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.015 Score=54.73 Aligned_cols=184 Identities=11% Similarity=0.115 Sum_probs=123.8
Q ss_pred HHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc--hhhhhhcCchHHHHHHHhcCCC
Q 021242 25 EALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR--DSLMSTRGLLDAISHVLRHHST 102 (315)
Q Consensus 25 ~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~--~~~i~~~~~i~~L~~lL~~~~~ 102 (315)
.++..|..++..-.--|.-+.++.+.++|++.|+.++..+..-+...+.|+...-. ..-+...+.|..|+.++.+
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~s--- 484 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMS--- 484 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhc---
Confidence 34455556655434457788889999999999987666666677778888766532 3445688999999999986
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCc--hhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccC-CC---cHHHHHhh
Q 021242 103 STSSAAVQSSAATLHSLLVVDSY--RPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALY-PL---NRYQVIAL 176 (315)
Q Consensus 103 ~~~~~~~~~a~~~L~~Ls~~~~~--~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~-~~---~~~~i~~~ 176 (315)
.+...+.++.|.++++....++ +..+...-| +..++++.. +....++..++..|.|+.-+ .. .+...+..
T Consensus 485 -KDdaLqans~wvlrHlmyncq~~ekf~~Lakig-~~kvl~~~N--Dpc~~vq~q~lQilrNftc~~~knEkskdv~~K~ 560 (743)
T COG5369 485 -KDDALQANSEWVLRHLMYNCQKNEKFKFLAKIG-VEKVLSYTN--DPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKA 560 (743)
T ss_pred -chhhhhhcchhhhhhhhhcCcchhhhhhHHhcC-HHHHHHHhc--CcccccHHHHHHHHHhcccccccccccceeEEec
Confidence 4567888999999999976554 333444458 899999988 34678999999999998762 22 23222221
Q ss_pred ---C-CcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHH
Q 021242 177 ---G-GVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFK 216 (315)
Q Consensus 177 ---g-~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~ 216 (315)
. ....+++.++. .++-..+..+.+|.+++.++++.+.++
T Consensus 561 ~p~~ylfk~l~~k~e~-~np~~i~~~~yilv~~aa~d~~l~~~V 603 (743)
T COG5369 561 TPRRYLFKRLIDKYEE-NNPMEILEGCYILVRNAACDDTLDYIV 603 (743)
T ss_pred ChHHHHHHHHHHHHHh-cCchhhhhhHHHHHHHHhccchHHHHH
Confidence 1 23345555542 344335556777777766555444443
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.1 Score=51.16 Aligned_cols=235 Identities=12% Similarity=0.087 Sum_probs=137.3
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccch---hhhh
Q 021242 9 RSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRD---SLMS 85 (315)
Q Consensus 9 ~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~---~~i~ 85 (315)
|+.=+-+++++..-+..|+.+....-..-+..+..=...+++|.++.+..++..-++..+.|.|+.++.+-.. ....
T Consensus 367 ~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~ 446 (859)
T KOG1241|consen 367 PFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQEL 446 (859)
T ss_pred HHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhh
Confidence 3444477889999999999999988755344444444567899999999876667889999999999877432 1222
Q ss_pred hcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcC--CCchhh----hhh--ccccHHHHHHHhhccC-CChHHHHHH
Q 021242 86 TRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVV--DSYRPI----IGA--KRDIIHSLIEIIKTRN-SPLRSVKDA 156 (315)
Q Consensus 86 ~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~--~~~~~~----i~~--~~g~i~~Lv~ll~~~~-~~~~~~~~a 156 (315)
-...++.++.-|.+ .|.+..++||++-+|+.. +..... ... -..+|..|++.-...+ .+...+..|
T Consensus 447 l~~~l~~l~~gL~D-----ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AA 521 (859)
T KOG1241|consen 447 LQSKLSALLEGLND-----EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAA 521 (859)
T ss_pred hhHHHHHHHHHhhh-----CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHH
Confidence 44566677777764 677888999999999832 111111 111 0122334444433212 123577788
Q ss_pred HHHHHHhcc-CCCcHHHHHhhCCcHHHHHHH----h----cCC----CcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHH
Q 021242 157 LKALFGIAL-YPLNRYQVIALGGVQPLFSLV----V----NGG----RAGIVEDASAVIAQIAG-CEESVDEFKKCCGIG 222 (315)
Q Consensus 157 ~~aL~~Ls~-~~~~~~~i~~~g~v~~L~~lL----~----~~~----~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~ 222 (315)
..+|..|-. .++....++ .+.......-| . +.. ...++...|.+|..+-. .+..+..+.+ ..+.
T Consensus 522 YeALmElIk~st~~vy~~v-~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d-~iM~ 599 (859)
T KOG1241|consen 522 YEALMELIKNSTDDVYPMV-QKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSD-QIMG 599 (859)
T ss_pred HHHHHHHHHcCcHHHHHHH-HHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHH-HHHH
Confidence 899998877 455555554 23333333222 1 000 11223335555555432 2222222221 2346
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHHHHHhcc
Q 021242 223 VLVDLLDLGTGSGHRVKENAVSALLNLVNF 252 (315)
Q Consensus 223 ~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~ 252 (315)
.+++++..+ .+..+.+.+..++..+...
T Consensus 600 lflri~~s~--~s~~v~e~a~laV~tl~~~ 627 (859)
T KOG1241|consen 600 LFLRIFESK--RSAVVHEEAFLAVSTLAES 627 (859)
T ss_pred HHHHHHcCC--ccccchHHHHHHHHHHHHH
Confidence 667777753 3666777777766666543
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.11 Score=50.92 Aligned_cols=237 Identities=13% Similarity=0.158 Sum_probs=135.1
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhccCch----------------hhHHHHh--CCCHHHHHHHHcCCCH-------H
Q 021242 9 RSLVTKLGSVSEQTRAEALAELRLLSKHDAE----------------IRPMISE--AGSIPYLAEILYSSSH-------A 63 (315)
Q Consensus 9 ~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~----------------~~~~i~~--~g~i~~Lv~lL~~~~~-------~ 63 (315)
..-+..++|.++++...|++..+.++.+.-+ ++..... .+++|.|+++|...++ .
T Consensus 262 aitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWn 341 (859)
T KOG1241|consen 262 AITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWN 341 (859)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCc
Confidence 3445667888899999999999977754222 1111111 3678889999854221 2
Q ss_pred HHHHHHHHHHhcCcccchhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCch--hhhhhccccHHHHHH
Q 021242 64 FQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYR--PIIGAKRDIIHSLIE 141 (315)
Q Consensus 64 ~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~--~~i~~~~g~i~~Lv~ 141 (315)
.-.+|..+|.-++.-- ....+++.+.+++.+-.+++-..++.++-+....-..++.. ..+. .+++|.++.
T Consensus 342 p~kAAg~CL~l~A~~~------~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV--~qalp~ii~ 413 (859)
T KOG1241|consen 342 PAKAAGVCLMLFAQCV------GDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIV--IQALPSIIN 413 (859)
T ss_pred HHHHHHHHHHHHHHHh------cccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHH--hhhhHHHHH
Confidence 4455556665444322 22234455555542111255666777777777766544432 2333 344899999
Q ss_pred HhhccCCChHHHHHHHHHHHHhccC-CCcHH-HHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcC--hhhHHH---
Q 021242 142 IIKTRNSPLRSVKDALKALFGIALY-PLNRY-QVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGC--EESVDE--- 214 (315)
Q Consensus 142 ll~~~~~~~~~~~~a~~aL~~Ls~~-~~~~~-~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~--~~~~~~--- 214 (315)
+.. +.+.-++..+.|+|..++.. ++-+. ...-.+.++.++.=|. .++.+..+++|++-+|+.. +..+..
T Consensus 414 lm~--D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~--DePrva~N~CWAf~~Laea~~eA~~s~~qt 489 (859)
T KOG1241|consen 414 LMS--DPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN--DEPRVASNVCWAFISLAEAAYEAAVSNGQT 489 (859)
T ss_pred Hhc--CchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh--hCchHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 998 34667778899999999974 32221 2223466667777664 3577889999999999842 111111
Q ss_pred -HHhcCCHHHHHH-HhhcC---CCCChhHHHHHHHHHHHHhccCCHHHH
Q 021242 215 -FKKCCGIGVLVD-LLDLG---TGSGHRVKENAVSALLNLVNFGGERAA 258 (315)
Q Consensus 215 -i~~~~~i~~Lv~-ll~~~---~~~~~~~~~~a~~~L~~l~~~~~~~~~ 258 (315)
+.. ...+.++. ++... +......|-.+-.+|..+-++..+.+.
T Consensus 490 ~~~t-~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy 537 (859)
T KOG1241|consen 490 DPAT-PFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVY 537 (859)
T ss_pred Cccc-hhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHH
Confidence 111 12222333 22211 112345666666777777665554443
|
|
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.015 Score=42.97 Aligned_cols=66 Identities=20% Similarity=0.229 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHH
Q 021242 194 IVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVK 262 (315)
Q Consensus 194 ~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~ 262 (315)
++...+.+|.||+. ++.....+.+.|||+.+++...-+ +.++.++|.|..++.+||..+ ++. ++++
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD-~~nP~irEwai~aiRnL~e~n-~eN-Q~~I 68 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNID-DHNPFIREWAIFAIRNLCEGN-PEN-QEFI 68 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCC-cccHHHHHHHHHHHHHHHhCC-HHH-HHHH
Confidence 34567889999987 688899999999999999987653 468999999999999999754 344 3443
|
Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region []. |
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0063 Score=39.52 Aligned_cols=55 Identities=18% Similarity=0.074 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 021242 236 HRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKIL 294 (315)
Q Consensus 236 ~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l 294 (315)
+.+|..|+++|.+++.... ......+ ..+++.|..+++++++.||..|++.|.++
T Consensus 1 p~vR~~A~~aLg~l~~~~~-~~~~~~~---~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCP-ELLQPYL---PELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTH-HHHHHHH---HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccH-HHHHHHH---HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 3678999999999876543 3323332 56999999999999999999999988654
|
... |
| >KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.088 Score=44.96 Aligned_cols=148 Identities=14% Similarity=0.145 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcC-----CCHHHHHHHHHHHHhcCcccch---hhhhhcCchHH
Q 021242 21 QTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYS-----SSHAFQENAAATLLNLSITSRD---SLMSTRGLLDA 92 (315)
Q Consensus 21 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~~~~~a~~~L~~la~~~~~---~~i~~~~~i~~ 92 (315)
.-...|+..+.-++.+ ++.|..+.++..=--|-.+|.. ..+-.|-.++.++..+...++. +.....+.+|.
T Consensus 94 nRVcnaL~LlQcvASH-pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPl 172 (293)
T KOG3036|consen 94 NRVCNALALLQCVASH-PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPL 172 (293)
T ss_pred chHHHHHHHHHHHhcC-cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHH
Confidence 4556777777777766 8899999998754444555532 2345889999999999988763 33458899999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhc-------cccHHHHHHHhhccCCChHHHHHHHHHHHHhcc
Q 021242 93 ISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAK-------RDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL 165 (315)
Q Consensus 93 L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~-------~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~ 165 (315)
.++.+.. ++...+..|..++..+-.++.+-.-+.+. +-.+..++.-+.+ .+++...+++.++..+|+.
T Consensus 173 CLrime~----GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~-~ps~RllKhviRcYlrLsd 247 (293)
T KOG3036|consen 173 CLRIMES----GSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVS-MPSPRLLKHVIRCYLRLSD 247 (293)
T ss_pred HHHHHhc----ccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhcC
Confidence 9999997 77888889999998888877663333221 1223333333332 4678888999999999999
Q ss_pred CCCcHHHHH
Q 021242 166 YPLNRYQVI 174 (315)
Q Consensus 166 ~~~~~~~i~ 174 (315)
++.-|..+.
T Consensus 248 nprar~aL~ 256 (293)
T KOG3036|consen 248 NPRARAALR 256 (293)
T ss_pred CHHHHHHHH
Confidence 887776654
|
|
| >PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.031 Score=48.51 Aligned_cols=101 Identities=17% Similarity=0.226 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHhcc-CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHH-hcChhhHHHHHhcCCHHHHHHHh
Q 021242 151 RSVKDALKALFGIAL-YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQI-AGCEESVDEFKKCCGIGVLVDLL 228 (315)
Q Consensus 151 ~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L-~~~~~~~~~i~~~~~i~~Lv~ll 228 (315)
.....|++.|-.++. +|..+..+-+..++..++++|.......++..++.+|-.+ ..++.+...|.+.+|+..++.++
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 345678899999998 8888888889999999999995333456666777766655 55789999999999999999999
Q ss_pred hcCCCCChhHHHHHHHHHHHHhcc
Q 021242 229 DLGTGSGHRVKENAVSALLNLVNF 252 (315)
Q Consensus 229 ~~~~~~~~~~~~~a~~~L~~l~~~ 252 (315)
+.. ..+..++-.++..|+-....
T Consensus 186 k~~-~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 186 KSK-STDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred ccc-cccHHHhHHHHHHHHHHHcc
Confidence 975 35778888899988877654
|
Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], []. |
| >PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.56 Score=42.66 Aligned_cols=256 Identities=14% Similarity=0.086 Sum_probs=160.8
Q ss_pred HHHHHHHHHHHHHh-ccCchhhHHHHh-CCCHHHHHHHHcC-CCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHH
Q 021242 21 QTRAEALAELRLLS-KHDAEIRPMISE-AGSIPYLAEILYS-SSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVL 97 (315)
Q Consensus 21 ~~~~~a~~~L~~l~-~~~~~~~~~i~~-~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL 97 (315)
+....+-..|..+. ..+...++..-+ .--+..+-..|.+ ++.+....++.-|. .-+...+.+..|+..|
T Consensus 14 ElVr~l~e~L~~L~~~~~~~~~k~~eeisK~L~~mK~IL~G~~e~ep~~e~v~qLa--------~Ei~~~dll~~Li~~L 85 (335)
T PF08569_consen 14 ELVRSLREALEKLDSKSDKKREKAQEEISKYLQQMKEILYGDGEPEPNPEQVAQLA--------QEIYRSDLLYLLIRNL 85 (335)
T ss_dssp HHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHS-SS----HHHHHHHH--------HHHHHHTHHHHHHHTG
T ss_pred HHHHHHHHHHHHhccccCcchhhHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHH--------HHHHHhCHHHHHHHHh
Confidence 66666667777773 222222222222 2224444444433 23332222222221 1234778899999999
Q ss_pred hcCCCCCCHHHHHHHHHHHHHhhcCC-Cchh-----hhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHH
Q 021242 98 RHHSTSTSSAAVQSSAATLHSLLVVD-SYRP-----IIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRY 171 (315)
Q Consensus 98 ~~~~~~~~~~~~~~a~~~L~~Ls~~~-~~~~-----~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~ 171 (315)
.. -+.+.+..++.+..++.... +++. .+... -|.++..|-..-+++++...+...|.....++....
T Consensus 86 ~~----L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~---~peil~~L~~gy~~~dial~~g~mlRec~k~e~l~~ 158 (335)
T PF08569_consen 86 PK----LDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERH---RPEILDILLRGYENPDIALNCGDMLRECIKHESLAK 158 (335)
T ss_dssp GG----S-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT-----THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHHHHH
T ss_pred hh----CCCcccccHHHHHHHHHhhccCCCCCchHHHHHhC---CHHHHHHHHHHhcCccccchHHHHHHHHHhhHHHHH
Confidence 86 67899999998888888533 3322 23332 133333222112456777888888999888888888
Q ss_pred HHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHH-hcChhhHHHHHhcC---CHHHHHHHhhcCCCCChhHHHHHHHHHH
Q 021242 172 QVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQI-AGCEESVDEFKKCC---GIGVLVDLLDLGTGSGHRVKENAVSALL 247 (315)
Q Consensus 172 ~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L-~~~~~~~~~i~~~~---~i~~Lv~ll~~~~~~~~~~~~~a~~~L~ 247 (315)
.++....+..+.+.+. .++..+...|..++..+ +.++....++.... .+...-.+|.++ +--+|.+++..|.
T Consensus 159 ~iL~~~~f~~ff~~~~-~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~---NYvtkrqslkLL~ 234 (335)
T PF08569_consen 159 IILYSECFWKFFKYVQ-LPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESS---NYVTKRQSLKLLG 234 (335)
T ss_dssp HHHTSGGGGGHHHHTT-SSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-S---SHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHhc-CCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCC---CeEeehhhHHHHH
Confidence 8888888888999885 57788899999999996 55676767776654 366777788875 8889999999999
Q ss_pred HHhccCCHHHHHHHHHHc--cCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhC
Q 021242 248 NLVNFGGERAAEEVKEMA--MQVADGIADVAQNGSAKGKTKAVALLKILVDD 297 (315)
Q Consensus 248 ~l~~~~~~~~~~~i~~~~--~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~ 297 (315)
.|-...+ ...-|.++- ..-+..+..++++.+..++-.|=.+++.+...
T Consensus 235 ellldr~--n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 235 ELLLDRS--NFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHSGG--GHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred HHHHchh--HHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 9986432 333333321 34467777899999999999999999988654
|
In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A. |
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.18 Score=50.76 Aligned_cols=270 Identities=14% Similarity=0.093 Sum_probs=148.6
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc-hhhhhhcC
Q 021242 10 SLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR-DSLMSTRG 88 (315)
Q Consensus 10 ~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~-~~~i~~~~ 88 (315)
.|++.+.+++.+.|.=|..-|..-...+.-+-+.=-+..++..++++|.+.++++|..|+++|.-++..-. .++. .
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le---~ 85 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLE---T 85 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHH---H
Confidence 78999999999999999988876554432222222345678899999999999999999999998884321 1111 1
Q ss_pred chHHHHHHHhcCCCCCCHHHHHH-HHHHHHHhhcCCCchhhhhh---ccccHHHHHHHhhccCCChHHHHHHHHHHHHhc
Q 021242 89 LLDAISHVLRHHSTSTSSAAVQS-SAATLHSLLVVDSYRPIIGA---KRDIIHSLIEIIKTRNSPLRSVKDALKALFGIA 164 (315)
Q Consensus 89 ~i~~L~~lL~~~~~~~~~~~~~~-a~~~L~~Ls~~~~~~~~i~~---~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls 164 (315)
.++.|..-+-+ +..+.+.. +.+.....+..++....... +.-+.|.|..-+....+...++-.++-.+...-
T Consensus 86 ~ve~L~~~~~s----~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~l 161 (1233)
T KOG1824|consen 86 IVENLCSNMLS----GKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVL 161 (1233)
T ss_pred HHHHHhhhhcc----chhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHH
Confidence 23334333322 23333332 22222233333321111111 112345555555432223346666666665433
Q ss_pred cC-CCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHH
Q 021242 165 LY-PLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAV 243 (315)
Q Consensus 165 ~~-~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~ 243 (315)
+. .+.--. ...+....++.-+. .+...++.+|+..|..|+..-. +... .+.+..|++-|.+. .......--+
T Consensus 162 sr~g~ll~~-fh~~il~~l~~ql~-s~R~aVrKkai~~l~~la~~~~-~~ly--~~li~~Ll~~L~~~--~q~~~~rt~I 234 (1233)
T KOG1824|consen 162 SRFGTLLPN-FHLSILKCLLPQLQ-SPRLAVRKKAITALGHLASSCN-RDLY--VELIEHLLKGLSNR--TQMSATRTYI 234 (1233)
T ss_pred HhhcccCcc-hHHHHHHHHhhccc-ChHHHHHHHHHHHHHHHHHhcC-HHHH--HHHHHHHHhccCCC--CchHHHHHHH
Confidence 31 110001 23344455555554 3455678899999999976311 1111 12345566656543 2333333445
Q ss_pred HHHHHHhccCCHHHHHHHHHHccCcHHHHHHHH---hhCCHHHHHHHHHHHHHHhhC
Q 021242 244 SALLNLVNFGGERAAEEVKEMAMQVADGIADVA---QNGSAKGKTKAVALLKILVDD 297 (315)
Q Consensus 244 ~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll---~~~~~~~k~~A~~~L~~l~~~ 297 (315)
.+|..+|...+.+ .-.+....+|.+.+.. +.++.+.|+.+-..|..|-..
T Consensus 235 q~l~~i~r~ag~r----~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~r 287 (1233)
T KOG1824|consen 235 QCLAAICRQAGHR----FGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRR 287 (1233)
T ss_pred HHHHHHHHHhcch----hhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHh
Confidence 6677777644322 2222244667777777 667889999888877766543
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.1 Score=43.02 Aligned_cols=111 Identities=17% Similarity=0.164 Sum_probs=80.4
Q ss_pred CHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHHh
Q 021242 19 SEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLR 98 (315)
Q Consensus 19 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~ 98 (315)
+|.+|..++.++..++..-+.. + ...+|.+...|+++++.+|..|+.+|..|...+--++ +...+..++..+.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~----v-e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~--k~~l~~~~l~~l~ 73 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNL----V-EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV--KGQLFSRILKLLV 73 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHH----H-HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee--hhhhhHHHHHHHc
Confidence 4789999999999999776542 2 3448999999999999999999999999876653221 1223467777777
Q ss_pred cCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhh
Q 021242 99 HHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIK 144 (315)
Q Consensus 99 ~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~ 144 (315)
+ ++++++..|...+..++... ....+.. - ++.++.-+.
T Consensus 74 D----~~~~Ir~~A~~~~~e~~~~~-~~~~i~~--~-~~e~i~~l~ 111 (178)
T PF12717_consen 74 D----ENPEIRSLARSFFSELLKKR-NPNIIYN--N-FPELISSLN 111 (178)
T ss_pred C----CCHHHHHHHHHHHHHHHHhc-cchHHHH--H-HHHHHHHHh
Confidence 6 78899999999999888643 2233332 3 566666555
|
|
| >PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5 | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.017 Score=39.97 Aligned_cols=67 Identities=21% Similarity=0.138 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcC
Q 021242 153 VKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCC 219 (315)
Q Consensus 153 ~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~ 219 (315)
.+.|++++.++++.+.....+-+.++++.++++....+...++-.|..+|.-++...++.+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 4679999999999888888877789999999999866777889999999999999999999887665
|
|
| >PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.047 Score=45.45 Aligned_cols=106 Identities=9% Similarity=0.090 Sum_probs=79.9
Q ss_pred CCCcchHHHHHHHHHHHhcChhhHHHHHhc---------------C-CHHHHHHHhhcCC---CCChhHHHHHHHHHHHH
Q 021242 189 GGRAGIVEDASAVIAQIAGCEESVDEFKKC---------------C-GIGVLVDLLDLGT---GSGHRVKENAVSALLNL 249 (315)
Q Consensus 189 ~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~---------------~-~i~~Lv~ll~~~~---~~~~~~~~~a~~~L~~l 249 (315)
+++......++.+|+||+..+++...+.+. + .+..|++.+..|. .....-..+...+|.|+
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl 85 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL 85 (192)
T ss_pred CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence 356677889999999999999888866432 1 3788888777631 11234556788999999
Q ss_pred hccCCHHHHHHHHHHccCc--HHHHHHHHhhCCHHHHHHHHHHHHHHhh
Q 021242 250 VNFGGERAAEEVKEMAMQV--ADGIADVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 250 ~~~~~~~~~~~i~~~~~g~--~~~L~~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
++. ++.++.++..+.+. +..|+.+.++.+...|.-++.+++|+.=
T Consensus 86 S~~--~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccF 132 (192)
T PF04063_consen 86 SQL--PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCF 132 (192)
T ss_pred cCC--HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhc
Confidence 875 45667887644566 8889888888899999999999998853
|
It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO). |
| >PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.63 Score=47.14 Aligned_cols=238 Identities=15% Similarity=0.095 Sum_probs=135.7
Q ss_pred hhhHHHHHHHhCC-----CCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHc----CCC----HHHHHHHHHH
Q 021242 5 RRTVRSLVTKLGS-----VSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILY----SSS----HAFQENAAAT 71 (315)
Q Consensus 5 ~~~i~~Lv~~L~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~----~~~----~~~~~~a~~~ 71 (315)
-+++..+++++.+ +..+.-...+..|..+++- +.||+.+.+.|+++.|+..|. ... +++-+..+.+
T Consensus 116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~I 194 (802)
T PF13764_consen 116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEI 194 (802)
T ss_pred CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHH
Confidence 3556677777754 3345555666666677766 789999999999999999985 222 3455555555
Q ss_pred HHhcCcccc----h---hhhh-------hcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCC-CchhhhhhccccH
Q 021242 72 LLNLSITSR----D---SLMS-------TRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVD-SYRPIIGAKRDII 136 (315)
Q Consensus 72 L~~la~~~~----~---~~i~-------~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~~g~i 136 (315)
+--+..... . .... ...-++.+++.+.++....++.+....+++|-+|+..+ +....+.+. +
T Consensus 195 iE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~---F 271 (802)
T PF13764_consen 195 IESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH---F 271 (802)
T ss_pred HHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH---H
Confidence 533332211 1 1010 11236666666665332346777888899999999644 444444431 3
Q ss_pred HHHHHHhhcc---CCChHHHHHHHHHHHHhcc----CC---CcHHHHHhhCCcHHHHHHHhcC-CC------cch-----
Q 021242 137 HSLIEIIKTR---NSPLRSVKDALKALFGIAL----YP---LNRYQVIALGGVQPLFSLVVNG-GR------AGI----- 194 (315)
Q Consensus 137 ~~Lv~ll~~~---~~~~~~~~~a~~aL~~Ls~----~~---~~~~~i~~~g~v~~L~~lL~~~-~~------~~~----- 194 (315)
.+.+++=+.. ..+... .+..+..++. +. ..|..+++.|++...+++|..+ |. +++
T Consensus 272 ~p~l~f~~~D~~~~~~~~~---~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~ 348 (802)
T PF13764_consen 272 KPYLDFDKFDEEHSPDEQF---KLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLS 348 (802)
T ss_pred HHhcChhhcccccCchHHH---HHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhc
Confidence 4444422210 111222 2344444433 22 3467889999999999998642 21 112
Q ss_pred ---HHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhc
Q 021242 195 ---VEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVN 251 (315)
Q Consensus 195 ---~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~ 251 (315)
...++.+|.-|+......+.++...+++.+..+=+.. ....+-..|=.+|-.++.
T Consensus 349 ~psLp~iL~lL~GLa~gh~~tQ~~~~~~~l~~lH~LEqvs--s~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 349 RPSLPYILRLLRGLARGHEPTQLLIAEQLLPLLHRLEQVS--SEEHIGSLAENLLEALAE 406 (802)
T ss_pred CCcHHHHHHHHHHHHhcCHHHHHHHHhhHHHHHHHhhcCC--CccchHHHHHHHHHHHhc
Confidence 2347888888888665555556666674444433321 134444455555666653
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.47 Score=47.07 Aligned_cols=214 Identities=17% Similarity=0.110 Sum_probs=123.2
Q ss_pred CHHHHHHHHHHHHHHhccCchhhHHHHhCCCH--------------HHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhh
Q 021242 19 SEQTRAEALAELRLLSKHDAEIRPMISEAGSI--------------PYLAEILYSSSHAFQENAAATLLNLSITSRDSLM 84 (315)
Q Consensus 19 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i--------------~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i 84 (315)
++..|..|+..|..+....+.|-+.+.=++.. ..++++|++.|..++..|+..++.+....+.+.+
T Consensus 307 ~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~m 386 (866)
T KOG1062|consen 307 NSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVRVM 386 (866)
T ss_pred CchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHHH
Confidence 34777777777777776655555444322221 3467778888888999999988888766554443
Q ss_pred hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc--CCCchhhhhhccccHHHHHHHhhcc--CCChHHHHHHHHHH
Q 021242 85 STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV--VDSYRPIIGAKRDIIHSLIEIIKTR--NSPLRSVKDALKAL 160 (315)
Q Consensus 85 ~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~--~~~~~~~i~~~~g~i~~Lv~ll~~~--~~~~~~~~~a~~aL 160 (315)
+..|+.+|.+ .+++++...+.-+..++. .+++++.| ..+.+++..- --.+++..+-++.+
T Consensus 387 -----v~eLl~fL~~----~d~~~k~~~as~I~~laEkfaP~k~W~i-------dtml~Vl~~aG~~V~~dv~~nll~LI 450 (866)
T KOG1062|consen 387 -----VKELLEFLES----SDEDFKADIASKIAELAEKFAPDKRWHI-------DTMLKVLKTAGDFVNDDVVNNLLRLI 450 (866)
T ss_pred -----HHHHHHHHHh----ccHHHHHHHHHHHHHHHHhcCCcchhHH-------HHHHHHHHhcccccchhhHHHHHHHH
Confidence 5678888886 578999999999999994 45555544 4444555421 01234444455555
Q ss_pred HHhccCCCcHHHHHhh-CCcHHHHHHHhcCCCcchHHHHHHHHHHHh---cChhhH---HHHHhcCCHHHHHHHhhcCCC
Q 021242 161 FGIALYPLNRYQVIAL-GGVQPLFSLVVNGGRAGIVEDASAVIAQIA---GCEESV---DEFKKCCGIGVLVDLLDLGTG 233 (315)
Q Consensus 161 ~~Ls~~~~~~~~i~~~-g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~---~~~~~~---~~i~~~~~i~~Lv~ll~~~~~ 233 (315)
.| +..+.......+- -++...- ++. -+...+..-+.|++..=. .++.+. ..+-+...+..+-+.+... .
T Consensus 451 a~-~~~e~~~y~~~rLy~a~~~~~-~~~-is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~-~ 526 (866)
T KOG1062|consen 451 AN-AFQELHEYAVLRLYLALSEDT-LLD-ISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSH-S 526 (866)
T ss_pred hc-CCcchhhHHHHHHHHHHhhhh-hhh-hhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhc-c
Confidence 44 2222222221110 1111111 111 124456667778777532 111111 1122233567777777765 2
Q ss_pred CChhHHHHHHHHHHHHhcc
Q 021242 234 SGHRVKENAVSALLNLVNF 252 (315)
Q Consensus 234 ~~~~~~~~a~~~L~~l~~~ 252 (315)
.+..++..++.+|..|+..
T Consensus 527 s~~~tk~yal~Al~KLSsr 545 (866)
T KOG1062|consen 527 SDSTTKGYALTALLKLSSR 545 (866)
T ss_pred chHHHHHHHHHHHHHHHhh
Confidence 4678898999999998764
|
|
| >KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.057 Score=46.07 Aligned_cols=98 Identities=15% Similarity=0.132 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCC--CCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHH
Q 021242 195 VEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGT--GSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGI 272 (315)
Q Consensus 195 ~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L 272 (315)
.-.++.+|..++++++.|..|.++..=--+..+|.+.. +..+..+--+++++..+.+.+.+++...+.. .+++|..
T Consensus 96 VcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~--TeIVPlC 173 (293)
T KOG3036|consen 96 VCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLT--TEIVPLC 173 (293)
T ss_pred HHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHH--hhhHHHH
Confidence 44688899999999999999998875334444555431 2356788889999999999776667677777 8999999
Q ss_pred HHHHhhCCHHHHHHHHHHHHHH
Q 021242 273 ADVAQNGSAKGKTKAVALLKIL 294 (315)
Q Consensus 273 ~~ll~~~~~~~k~~A~~~L~~l 294 (315)
+..++.|++..|.-|..|++.+
T Consensus 174 Lrime~GSelSKtvA~fIlqKI 195 (293)
T KOG3036|consen 174 LRIMESGSELSKTVATFILQKI 195 (293)
T ss_pred HHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999998766
|
|
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.014 Score=43.19 Aligned_cols=66 Identities=17% Similarity=0.116 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhcc-CCCcHHHHHhhCCcHHHHHHHhcCC-CcchHHHHHHHHHHHhc-ChhhHHHHHhc
Q 021242 153 VKDALKALFGIAL-YPLNRYQVIALGGVQPLFSLVVNGG-RAGIVEDASAVIAQIAG-CEESVDEFKKC 218 (315)
Q Consensus 153 ~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~L~~lL~~~~-~~~~~~~a~~~L~~L~~-~~~~~~~i~~~ 218 (315)
+....+.|.||+. ++.++..+.+.|++|.++..-.-++ ++-+++-|..+++||+. ++++++.+.+.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 4668899999998 6788899999999999998875443 45578889999999987 57777776553
|
Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region []. |
| >PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.028 Score=46.82 Aligned_cols=120 Identities=12% Similarity=-0.001 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhhcCCCchhhhh---------------hccccHHHHHHHhhcc---C-CChHHHHHHHHHHHHhccCCCc
Q 021242 109 VQSSAATLHSLLVVDSYRPIIG---------------AKRDIIHSLIEIIKTR---N-SPLRSVKDALKALFGIALYPLN 169 (315)
Q Consensus 109 ~~~a~~~L~~Ls~~~~~~~~i~---------------~~~g~i~~Lv~ll~~~---~-~~~~~~~~a~~aL~~Ls~~~~~ 169 (315)
...++..|.||+..++.+..+. ..+..+..|+..+..+ . ...+-..+.+..|.|+++.++.
T Consensus 12 adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~g 91 (192)
T PF04063_consen 12 ADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEG 91 (192)
T ss_pred HHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHH
Confidence 3456667777776665544221 1223578888887741 0 1234457889999999999999
Q ss_pred HHHHHhh--CC--cHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCC---HHHHHHHhh
Q 021242 170 RYQVIAL--GG--VQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCG---IGVLVDLLD 229 (315)
Q Consensus 170 ~~~i~~~--g~--v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~---i~~Lv~ll~ 229 (315)
|..+++. +. +..|+.+.. +++..-+.-++++|+|+|...+....+..... +|.++--|.
T Consensus 92 R~~~l~~~~~~~~l~kLl~ft~-~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 92 RQFFLDPQRYDGPLQKLLPFTE-HKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred HHHHhCchhhhhHHHHHHHHhc-cCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 9999863 44 566777764 34444466799999999999888888876442 444444333
|
It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO). |
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.81 Score=41.50 Aligned_cols=155 Identities=21% Similarity=0.241 Sum_probs=108.1
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHc-CCCHHHHHHHHHHHHhcCcccchhh
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILY-SSSHAFQENAAATLLNLSITSRDSL 83 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~la~~~~~~~ 83 (315)
+..++.+...|.+.++.+|..|+.+|..+-.. ..++.|+.++. +.+..++..|+++|..+-
T Consensus 73 ~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~-----------~a~~~li~~l~~d~~~~vR~~aa~aL~~~~------- 134 (335)
T COG1413 73 EEAVPLLRELLSDEDPRVRDAAADALGELGDP-----------EAVPPLVELLENDENEGVRAAAARALGKLG------- 134 (335)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCh-----------hHHHHHHHHHHcCCcHhHHHHHHHHHHhcC-------
Confidence 56789999999999999999999966666422 35899999998 477889999999998773
Q ss_pred hhhcCchHHHHHHHhcCCCCCCHH------------HHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChH
Q 021242 84 MSTRGLLDAISHVLRHHSTSTSSA------------AVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLR 151 (315)
Q Consensus 84 i~~~~~i~~L~~lL~~~~~~~~~~------------~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~ 151 (315)
....+..++..+++ .... .+..+...|.. ++. ...++.+...+. ..+..
T Consensus 135 --~~~a~~~l~~~l~~----~~~~~a~~~~~~~~~~~r~~a~~~l~~----------~~~-~~~~~~l~~~l~--~~~~~ 195 (335)
T COG1413 135 --DERALDPLLEALQD----EDSGSAAAALDAALLDVRAAAAEALGE----------LGD-PEAIPLLIELLE--DEDAD 195 (335)
T ss_pred --chhhhHHHHHHhcc----chhhhhhhhccchHHHHHHHHHHHHHH----------cCC-hhhhHHHHHHHh--CchHH
Confidence 55568888888875 2211 12222222222 333 234788888888 44668
Q ss_pred HHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHH
Q 021242 152 SVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQI 205 (315)
Q Consensus 152 ~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L 205 (315)
++..|..+|..+.... ..+.+.+...+. +++..++..++..|..+
T Consensus 196 vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~-~~~~~vr~~~~~~l~~~ 240 (335)
T COG1413 196 VRRAAASALGQLGSEN--------VEAADLLVKALS-DESLEVRKAALLALGEI 240 (335)
T ss_pred HHHHHHHHHHHhhcch--------hhHHHHHHHHhc-CCCHHHHHHHHHHhccc
Confidence 8899999998877654 345566677764 55666776666666654
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.018 Score=42.30 Aligned_cols=92 Identities=17% Similarity=0.166 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhh-hhcCchHHHHHHHhcCC
Q 021242 23 RAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLM-STRGLLDAISHVLRHHS 101 (315)
Q Consensus 23 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i-~~~~~i~~L~~lL~~~~ 101 (315)
|..++..|+..+..-+.. ..-.-.-++|+++..+.+++..+|..|+.+|+|++..-+..++ .-...++.|.+++.+
T Consensus 3 R~ggli~Laa~ai~l~~~-~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D-- 79 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKD-ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSAD-- 79 (97)
T ss_pred hhHHHHHHHHHHHHchHh-HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--
Confidence 567778888776443222 1111256799999999999999999999999999876553332 345577888888876
Q ss_pred CCCCHHHHHHHHHHHHHhh
Q 021242 102 TSTSSAAVQSSAATLHSLL 120 (315)
Q Consensus 102 ~~~~~~~~~~a~~~L~~Ls 120 (315)
.++.++ .++..|-+|-
T Consensus 80 --~d~~Vr-~~a~~Ld~ll 95 (97)
T PF12755_consen 80 --PDENVR-SAAELLDRLL 95 (97)
T ss_pred --CchhHH-HHHHHHHHHh
Confidence 455555 5667776653
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.75 Score=44.18 Aligned_cols=167 Identities=14% Similarity=0.119 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHhcCccc-chhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHH
Q 021242 62 HAFQENAAATLLNLSITS-RDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLI 140 (315)
Q Consensus 62 ~~~~~~a~~~L~~la~~~-~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv 140 (315)
..++..+++++..++..+ ....+ + ..+..|-.+|++ .+...+..|.++|..|++..+-+..... .. ++.|+
T Consensus 278 emV~lE~Ar~v~~~~~~nv~~~~~-~-~~vs~L~~fL~s----~rv~~rFsA~Riln~lam~~P~kv~vcN-~e-vEsLI 349 (898)
T COG5240 278 EMVFLEAARAVCALSEENVGSQFV-D-QTVSSLRTFLKS----TRVVLRFSAMRILNQLAMKYPQKVSVCN-KE-VESLI 349 (898)
T ss_pred hhhhHHHHHHHHHHHHhccCHHHH-H-HHHHHHHHHHhc----chHHHHHHHHHHHHHHHhhCCceeeecC-hh-HHHHh
Confidence 557777777777776554 22222 1 246667777776 5677888999999999987665655543 23 44443
Q ss_pred HHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcCh------hhHHH
Q 021242 141 EIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCE------ESVDE 214 (315)
Q Consensus 141 ~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~------~~~~~ 214 (315)
. +.+..+..+|..+|.. .-..++...++ ..++.++.=+. ++..-+.-.|+..|+++--.. .--..
T Consensus 350 ---s--d~Nr~IstyAITtLLK-TGt~e~idrLv--~~I~sfvhD~S-D~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~ 420 (898)
T COG5240 350 ---S--DENRTISTYAITTLLK-TGTEETIDRLV--NLIPSFVHDMS-DGFKIIAIDALRSLSLLFPSKKLSYLDFLGSS 420 (898)
T ss_pred ---h--cccccchHHHHHHHHH-cCchhhHHHHH--HHHHHHHHhhc-cCceEEeHHHHHHHHhhCcHHHHHHHHHHHHH
Confidence 4 2344566777777765 33455555544 23444443332 223333444555555431110 11122
Q ss_pred HHhcCC-------HHHHHHHhhcCCCCChhHHHHHHHHHHHH
Q 021242 215 FKKCCG-------IGVLVDLLDLGTGSGHRVKENAVSALLNL 249 (315)
Q Consensus 215 i~~~~~-------i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l 249 (315)
+.+.|| +..+.+++.. .+..||.++..|+..
T Consensus 421 L~~eGg~eFK~~~Vdaisd~~~~----~p~skEraLe~LC~f 458 (898)
T COG5240 421 LLQEGGLEFKKYMVDAISDAMEN----DPDSKERALEVLCTF 458 (898)
T ss_pred HHhcccchHHHHHHHHHHHHHhh----CchHHHHHHHHHHHH
Confidence 334454 4555556654 456666655544443
|
|
| >PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.1 Score=45.23 Aligned_cols=148 Identities=16% Similarity=0.185 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCC-----HHHHHHHHHHHHhcCcccchh---hhhhcCchHH
Q 021242 21 QTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSS-----HAFQENAAATLLNLSITSRDS---LMSTRGLLDA 92 (315)
Q Consensus 21 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-----~~~~~~a~~~L~~la~~~~~~---~i~~~~~i~~ 92 (315)
.-...|+..+..+|.+ ++.|..+.++...--|..+|+..+ +.+|-..+.+++.+...++.+ ...+.+.+|.
T Consensus 65 nRVcnaLaLlQ~vAsh-petr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiipl 143 (262)
T PF04078_consen 65 NRVCNALALLQCVASH-PETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPL 143 (262)
T ss_dssp HHHHHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHH
T ss_pred HHHHHHHHHHHHHHcC-hHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHH
Confidence 4556677777777765 899999999998777788886533 347888999999998876543 3458899999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhc-------cccHHHHHHHhhccCCChHHHHHHHHHHHHhcc
Q 021242 93 ISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAK-------RDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL 165 (315)
Q Consensus 93 L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~-------~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~ 165 (315)
.++.+.. ++.-.+..|..++..+-.++.+-..+.+. ..++..++.-+.. ..++...+...++-..|+.
T Consensus 144 cLr~me~----GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~-~pS~RLLKhIIrCYlRLsd 218 (262)
T PF04078_consen 144 CLRIMEF----GSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVK-QPSPRLLKHIIRCYLRLSD 218 (262)
T ss_dssp HHHHHHH----S-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHH-S--HHHHHHHHHHHHHHTT
T ss_pred HHHHHHh----ccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHcc-CCChhHHHHHHHHHHHHcc
Confidence 9999997 67777888999998887776553333222 2234444543332 3478889999999999999
Q ss_pred CCCcHHHHH
Q 021242 166 YPLNRYQVI 174 (315)
Q Consensus 166 ~~~~~~~i~ 174 (315)
++..+..+.
T Consensus 219 nprar~aL~ 227 (262)
T PF04078_consen 219 NPRAREALR 227 (262)
T ss_dssp STTHHHHHH
T ss_pred CHHHHHHHH
Confidence 998888775
|
Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B. |
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.16 Score=49.91 Aligned_cols=72 Identities=18% Similarity=0.156 Sum_probs=60.4
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCccc
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITS 79 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~ 79 (315)
+..+.++...+++.++.+|..|+....++-.. +.+.....|.++.|-+++.+.++.+..+|+.+|..+...+
T Consensus 120 ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~---~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 120 EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDI---DPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESH 191 (734)
T ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHhhcC---ChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhC
Confidence 45667888999999999999999888888533 4557778999999999999999999999999998887654
|
|
| >KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.47 Score=46.93 Aligned_cols=221 Identities=13% Similarity=0.132 Sum_probs=139.6
Q ss_pred hhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHH-hcCcccchhhhhhcCchHHHHHHHhcCCCCCCHHHHH--HHHHH
Q 021242 39 EIRPMISEAGSIPYLAEILYSSSHAFQENAAATLL-NLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQ--SSAAT 115 (315)
Q Consensus 39 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~-~la~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~--~a~~~ 115 (315)
.-+...++.|+...|+.|...+.+....++..+|. .+++..++. ...++++.+.+.+ +....+ .+..+
T Consensus 495 ~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~~----~~v~~~~~s~~~~-----d~~~~en~E~L~a 565 (748)
T KOG4151|consen 495 YERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGERS----YEVVKPLDSALHN-----DEKGLENFEALEA 565 (748)
T ss_pred HhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCch----hhhhhhhcchhhh-----hHHHHHHHHHHHH
Confidence 44667788999999999999888888888888886 444433321 1235555555543 223332 58889
Q ss_pred HHHhhcCC-CchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHH-HHHh-hCCcHHHHHHHhcCCCc
Q 021242 116 LHSLLVVD-SYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRY-QVIA-LGGVQPLFSLVVNGGRA 192 (315)
Q Consensus 116 L~~Ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~-~i~~-~g~v~~L~~lL~~~~~~ 192 (315)
+.||++.+ ..|..+...-+ ++.+-.++. .+++..+..++..+.||..++..-. .+++ ...++.....+. ....
T Consensus 566 ltnLas~s~s~r~~i~ke~~-~~~ie~~~~--ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e-~~~E 641 (748)
T KOG4151|consen 566 LTNLASISESDRQKILKEKA-LGKIEELMT--EENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLE-VADE 641 (748)
T ss_pred hhcccCcchhhHHHHHHHhc-chhhHHHhh--cccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHH-hhhh
Confidence 99999744 44555654335 566666665 5678899999999999999887654 3445 455666665554 2233
Q ss_pred chHHHHHHHHHHHhcC-hhhHHHHH-hcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHH
Q 021242 193 GIVEDASAVIAQIAGC-EESVDEFK-KCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVAD 270 (315)
Q Consensus 193 ~~~~~a~~~L~~L~~~-~~~~~~i~-~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~ 270 (315)
...-.+++.+..++.. ...+..+. -..+-..++.++.++ +..+|.....+..++.. ...+....+.. ...++
T Consensus 642 ~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~---~~~~qhrgl~~~ln~~~-~~~ei~~~~~~--~~~~~ 715 (748)
T KOG4151|consen 642 KFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDE---DDEIQHRGLVIILNLFE-ALFEIAEKIFE--TEVME 715 (748)
T ss_pred HHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCc---hhhhhhhhhhhhhhHHH-HHHHHHHHhcc--chHHH
Confidence 3444455566645443 33333232 234678888888876 78888888888888643 22234455554 55666
Q ss_pred HHHHHHhh
Q 021242 271 GIADVAQN 278 (315)
Q Consensus 271 ~L~~ll~~ 278 (315)
.+..+-..
T Consensus 716 ~l~~~~~~ 723 (748)
T KOG4151|consen 716 LLSGLQKL 723 (748)
T ss_pred HHHHHHHh
Confidence 66554443
|
|
| >KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.12 Score=50.92 Aligned_cols=190 Identities=11% Similarity=0.073 Sum_probs=125.0
Q ss_pred hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHH-hhcCCCchhhhhhccccHHHHHHHhhccCCChHH--HHHHH
Q 021242 81 DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHS-LLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRS--VKDAL 157 (315)
Q Consensus 81 ~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~-Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~--~~~a~ 157 (315)
+...+++|+.+.|+.+... +.+..+.....+|.. +. ++..+ ....++++.+.+.. +... ...++
T Consensus 497 ~~~~Ik~~~~~aLlrl~~~----q~e~akl~~~~aL~~~i~-f~~~~-----~~~v~~~~~s~~~~---d~~~~en~E~L 563 (748)
T KOG4151|consen 497 RAKKIKPGGYEALLRLGQQ----QFEEAKLKWYHALAGKID-FPGER-----SYEVVKPLDSALHN---DEKGLENFEAL 563 (748)
T ss_pred cCccccccHHHHHHHHHHH----hchHHHHHHHHHHhhhcC-CCCCc-----hhhhhhhhcchhhh---hHHHHHHHHHH
Confidence 4455699999999999985 567778777777772 11 11111 12346777777762 2222 34689
Q ss_pred HHHHHhcc-CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcC--CHHHHHHHhhcCCCC
Q 021242 158 KALFGIAL-YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCC--GIGVLVDLLDLGTGS 234 (315)
Q Consensus 158 ~aL~~Ls~-~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~--~i~~Lv~ll~~~~~~ 234 (315)
.+|.||++ +...|..+++.-+++-+-.++. +.++..+..++..+.||..++......+-.+ +.+-....+...
T Consensus 564 ~altnLas~s~s~r~~i~ke~~~~~ie~~~~-ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~--- 639 (748)
T KOG4151|consen 564 EALTNLASISESDRQKILKEKALGKIEELMT-EENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA--- 639 (748)
T ss_pred HHhhcccCcchhhHHHHHHHhcchhhHHHhh-cccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh---
Confidence 99999998 4556777887766665555554 4567788889999999988877666554332 566666666543
Q ss_pred ChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHH
Q 021242 235 GHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVA 289 (315)
Q Consensus 235 ~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~ 289 (315)
..+..-.+++++..|+.-.. .++..+.+ -......+..++.++++.++.--..
T Consensus 640 ~E~~~lA~a~a~a~I~sv~~-n~c~~~~~-~~~~~e~~~~~i~~~~~~~qhrgl~ 692 (748)
T KOG4151|consen 640 DEKFELAGAGALAAITSVVE-NHCSRILE-LLEWLEILVRAIQDEDDEIQHRGLV 692 (748)
T ss_pred hhHHhhhccccccchhhcch-hhhhhHHH-hhcchHHHHHhhcCchhhhhhhhhh
Confidence 56777777788887765433 23222333 2467888888999888877765444
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.80 E-value=1.9 Score=41.59 Aligned_cols=107 Identities=17% Similarity=0.073 Sum_probs=63.9
Q ss_pred hhhhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHH----HHcCCCH-HHHHHHHHHHHhcC
Q 021242 2 EVKRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAE----ILYSSSH-AFQENAAATLLNLS 76 (315)
Q Consensus 2 ~~~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~----lL~~~~~-~~~~~a~~~L~~la 76 (315)
|+|+..-.-..+.|+++.|.....|...+..++.-. .-+|..|-|.. ....+.| .....++.++.+.+
T Consensus 90 E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~E-------lp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~c 162 (858)
T COG5215 90 ESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARME-------LPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHC 162 (858)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh-------CccccchHHHHHHHHhccccCchHhHHHHHHHHHHHh
Confidence 344444445667788888888888888888777432 12344444444 4433333 57888999999988
Q ss_pred cccch-hhhhhcCc-hHHH-HHHHhcCCCCCCHHHHHHHHHHHHH
Q 021242 77 ITSRD-SLMSTRGL-LDAI-SHVLRHHSTSTSSAAVQSSAATLHS 118 (315)
Q Consensus 77 ~~~~~-~~i~~~~~-i~~L-~~lL~~~~~~~~~~~~~~a~~~L~~ 118 (315)
....+ .++...+. +-.+ ...++. ..+..++..+..+|.+
T Consensus 163 es~~Pe~li~~sN~il~aiv~ga~k~---et~~avRLaaL~aL~d 204 (858)
T COG5215 163 ESEAPEDLIQMSNVILFAIVMGALKN---ETTSAVRLAALKALMD 204 (858)
T ss_pred hccCHHHHHHHhhHHHHHHHHhhccc---CchHHHHHHHHHHHHH
Confidence 87654 34433332 2223 333343 2345567777788877
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.41 Score=46.52 Aligned_cols=180 Identities=14% Similarity=0.135 Sum_probs=106.7
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHhccCch------hhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCc---
Q 021242 7 TVRSLVTKLGSVSEQTRAEALAELRLLSKHDAE------IRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSI--- 77 (315)
Q Consensus 7 ~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~------~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~--- 77 (315)
...+.++.|+..+.++|..|+..++.+.+.-+. +...+.+ .+...+.+.+.+..-.++-.|+++|+.+-.
T Consensus 235 ~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D-~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe 313 (823)
T KOG2259|consen 235 CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKD-AAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE 313 (823)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHH-HHHHHHHHHHhcCceeeeehHHHHhchHHHhHH
Confidence 356788888999999999999999988766521 1222222 335555666654333333333333322100
Q ss_pred -------------------------------c-----c-----------c--hhhhhhcCchHHHHHHHhcCCCCCCHHH
Q 021242 78 -------------------------------T-----S-----------R--DSLMSTRGLLDAISHVLRHHSTSTSSAA 108 (315)
Q Consensus 78 -------------------------------~-----~-----------~--~~~i~~~~~i~~L~~lL~~~~~~~~~~~ 108 (315)
+ . + ..-++.+|+-..++.=|.+ +--++
T Consensus 314 e~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlED----Ef~EV 389 (823)
T KOG2259|consen 314 EIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLED----EFYEV 389 (823)
T ss_pred HHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechH----HHHHH
Confidence 0 0 0 0112345556666666664 45588
Q ss_pred HHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhc
Q 021242 109 VQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVN 188 (315)
Q Consensus 109 ~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~ 188 (315)
+..|...++.|+.+.+. +.. .. +..|++++. ++...++..|+.+|..++.+-. ++..-++.++..|.
T Consensus 390 R~AAV~Sl~~La~ssP~---FA~-~a-ldfLvDMfN--DE~~~VRL~ai~aL~~Is~~l~-----i~eeql~~il~~L~- 456 (823)
T KOG2259|consen 390 RRAAVASLCSLATSSPG---FAV-RA-LDFLVDMFN--DEIEVVRLKAIFALTMISVHLA-----IREEQLRQILESLE- 456 (823)
T ss_pred HHHHHHHHHHHHcCCCC---cHH-HH-HHHHHHHhc--cHHHHHHHHHHHHHHHHHHHhe-----ecHHHHHHHHHHHH-
Confidence 88999999999964432 333 24 899999998 5567888999999998887522 22333455555554
Q ss_pred CCCcchHHHHHHHHHH
Q 021242 189 GGRAGIVEDASAVIAQ 204 (315)
Q Consensus 189 ~~~~~~~~~a~~~L~~ 204 (315)
+.+..+++..-.+|++
T Consensus 457 D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 457 DRSVDVREALRELLKN 472 (823)
T ss_pred hcCHHHHHHHHHHHHh
Confidence 3344555544444443
|
|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.58 E-value=2.4 Score=41.78 Aligned_cols=54 Identities=13% Similarity=0.141 Sum_probs=30.2
Q ss_pred HhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCC--HHHHHHHhh
Q 021242 174 IALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCG--IGVLVDLLD 229 (315)
Q Consensus 174 ~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~--i~~Lv~ll~ 229 (315)
++.+++..++++.. .++.++..|+..+-..-..+...+.++..|| +...-.++.
T Consensus 457 vsdeVW~RvvQiVv--Nnedlq~yaak~~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa 512 (938)
T KOG1077|consen 457 VSDEVWYRVVQIVV--NNEDLQGYAAKRLFEYLQKPACHENMVKVGGYILGEFGNLIA 512 (938)
T ss_pred ccHHHHHHhheeEe--cchhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhc
Confidence 34455666666664 2455666666666655555566666666664 333333443
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.57 E-value=3 Score=42.48 Aligned_cols=164 Identities=16% Similarity=0.186 Sum_probs=103.2
Q ss_pred HHHHhCC--CCHHHHHHHHHHHHHHhccCchhhHHHHh--CCCHHHHHHHHcCCCHHHHHHHHHHHHhcCccc-c-hhhh
Q 021242 11 LVTKLGS--VSEQTRAEALAELRLLSKHDAEIRPMISE--AGSIPYLAEILYSSSHAFQENAAATLLNLSITS-R-DSLM 84 (315)
Q Consensus 11 Lv~~L~~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~-~-~~~i 84 (315)
.++.|.+ .++++++.|..++..+...-. ..+.. ...+|.+++-|+ +.-.+-.|++++..++..+ . ...-
T Consensus 573 tl~rL~a~d~DqeVkeraIscmgq~i~~fg---D~l~~eL~~~L~il~eRl~--nEiTRl~AvkAlt~Ia~S~l~i~l~~ 647 (1233)
T KOG1824|consen 573 TLQRLKATDSDQEVKERAISCMGQIIANFG---DFLGNELPRTLPILLERLG--NEITRLTAVKALTLIAMSPLDIDLSP 647 (1233)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHHHh---hhhhhhhHHHHHHHHHHHh--chhHHHHHHHHHHHHHhccceeehhh
Confidence 3445543 468999999988887753311 12221 345666666664 4457788999998887765 2 2222
Q ss_pred hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc--CCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHH
Q 021242 85 STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV--VDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFG 162 (315)
Q Consensus 85 ~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~--~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~ 162 (315)
.-..+++.+.++++. .....+.....++..|.. .+.......+ .++..+-.++. ..+..+...|...|..
T Consensus 648 ~l~~il~~l~~flrK----~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e--~vL~el~~Lis--esdlhvt~~a~~~L~t 719 (1233)
T KOG1824|consen 648 VLTEILPELASFLRK----NQRALRLATLTALDKLVKNYSDSIPAELLE--AVLVELPPLIS--ESDLHVTQLAVAFLTT 719 (1233)
T ss_pred hHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhccccHHHHH--HHHHHhhhhhh--HHHHHHHHHHHHHHHH
Confidence 234578899999975 344555556666666653 1222222222 33555556666 3467788889999998
Q ss_pred hccCCCcHHHHHhhCCcHHHHHHHh
Q 021242 163 IALYPLNRYQVIALGGVQPLFSLVV 187 (315)
Q Consensus 163 Ls~~~~~~~~i~~~g~v~~L~~lL~ 187 (315)
+...+.....-+..-.++.++.+++
T Consensus 720 l~~~~ps~l~~~~~~iL~~ii~ll~ 744 (1233)
T KOG1824|consen 720 LAIIQPSSLLKISNPILDEIIRLLR 744 (1233)
T ss_pred HHhcccHHHHHHhhhhHHHHHHHhh
Confidence 8887766666666788888898886
|
|
| >PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.71 Score=40.07 Aligned_cols=144 Identities=16% Similarity=0.097 Sum_probs=94.2
Q ss_pred ChHHHHHHHHHHHHhccC-CCcHHHHHh-hCCcHHHHHHHhcC-C---Ccch-------HHHHHHHHHHHhcChhhHHHH
Q 021242 149 PLRSVKDALKALFGIALY-PLNRYQVIA-LGGVQPLFSLVVNG-G---RAGI-------VEDASAVIAQIAGCEESVDEF 215 (315)
Q Consensus 149 ~~~~~~~a~~aL~~Ls~~-~~~~~~i~~-~g~v~~L~~lL~~~-~---~~~~-------~~~a~~~L~~L~~~~~~~~~i 215 (315)
+++.++.|+.-|+.--.. ++-.-.+-. -|.+..|++=+.+- | .+.+ .-.|+++|..++++++.|..|
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 567778777777653332 333333333 47777766544321 1 1111 223778888889999999999
Q ss_pred HhcCCHHHHHHHhhcCC--CCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHH
Q 021242 216 KKCCGIGVLVDLLDLGT--GSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKI 293 (315)
Q Consensus 216 ~~~~~i~~Lv~ll~~~~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~ 293 (315)
.++...--|...|.... +..+..|-.+.+++..+.+.+..++...+.+ .+.+|..+..++.|++..|.-|..+++.
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~--tEiiplcLr~me~GselSKtvAtfIlqK 165 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQ--TEIIPLCLRIMEFGSELSKTVATFILQK 165 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHC--TTHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHh--hchHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 99885444444554421 1135677889999999998665566666766 7899999999999999999999999877
Q ss_pred H
Q 021242 294 L 294 (315)
Q Consensus 294 l 294 (315)
+
T Consensus 166 I 166 (262)
T PF04078_consen 166 I 166 (262)
T ss_dssp H
T ss_pred H
Confidence 6
|
Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B. |
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=95.50 E-value=1.7 Score=38.82 Aligned_cols=172 Identities=14% Similarity=0.062 Sum_probs=108.1
Q ss_pred CCHHHHH-HHHcCCCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCch
Q 021242 48 GSIPYLA-EILYSSSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYR 126 (315)
Q Consensus 48 g~i~~Lv-~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~ 126 (315)
+.+..|+ +-+++.++.+|+.|+.+|+-++.-+.+.. ...++.+...++. ++++++..|+.+|..+.......
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a---~~~l~l~~~~~~~----~~~~v~~~al~~l~Dll~~~g~~ 98 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELA---KEHLPLFLQALQK----DDEEVKITALKALFDLLLTHGID 98 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHH---HHHHHHHHHHHHh----CCHHHHHHHHHHHHHHHHHcCch
Confidence 4454554 66788899999999999988886654211 1246777777865 67899999999999988533211
Q ss_pred h--hhh------hccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcC---CCcchH
Q 021242 127 P--IIG------AKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNG---GRAGIV 195 (315)
Q Consensus 127 ~--~i~------~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~---~~~~~~ 195 (315)
. ... ....++..+.+.+. +.+++++..|+..+..|-....... ...++..|+-+.-+. ++..++
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~l~~~l~--~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~Lr 173 (298)
T PF12719_consen 99 IFDSESDNDESVDSKSLLKILTKFLD--SENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLR 173 (298)
T ss_pred hccchhccCccchHhHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHH
Confidence 1 111 11246677888888 5588899999999988776543333 122333443333221 122333
Q ss_pred HHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcC
Q 021242 196 EDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLG 231 (315)
Q Consensus 196 ~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~ 231 (315)
..-...+-..+......+..+....++.+-.+....
T Consensus 174 Q~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 174 QCLSVFFPVYASSSPENQERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 333345566666655555666667778877777654
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.28 Score=48.27 Aligned_cols=107 Identities=19% Similarity=0.192 Sum_probs=78.6
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhh
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMS 85 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~ 85 (315)
..++.++...++++|.+|.-|++.+..+--. . +..-.+.+|.+.+++.++-+|..++....++- +.++....
T Consensus 86 ~avnt~~kD~~d~np~iR~lAlrtm~~l~v~--~-----i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~-~~~~~~~~ 157 (734)
T KOG1061|consen 86 LAVNTFLKDCEDPNPLIRALALRTMGCLRVD--K-----ITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLF-DIDPDLVE 157 (734)
T ss_pred hhhhhhhccCCCCCHHHHHHHhhceeeEeeh--H-----HHHHHHHHHHHhccCCChhHHHHHHHHHHHhh-cCChhhcc
Confidence 4556666666777788887777777665422 2 22334778899999999989888877776553 23455666
Q ss_pred hcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCC
Q 021242 86 TRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDS 124 (315)
Q Consensus 86 ~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~ 124 (315)
..|.++.|.+++.+ +++.+..+|..+|..+...+.
T Consensus 158 ~~gl~~~L~~ll~D----~~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 158 DSGLVDALKDLLSD----SNPMVVANALAALSEIHESHP 192 (734)
T ss_pred ccchhHHHHHHhcC----CCchHHHHHHHHHHHHHHhCC
Confidence 88999999999996 688999999999999986544
|
|
| >KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.65 Score=44.28 Aligned_cols=167 Identities=13% Similarity=0.117 Sum_probs=109.4
Q ss_pred chHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCC--ChHHHHHHHHHHHHhccC
Q 021242 89 LLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNS--PLRSVKDALKALFGIALY 166 (315)
Q Consensus 89 ~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~--~~~~~~~a~~aL~~Ls~~ 166 (315)
....+..++.+ ++...+..+...|..|+........+..+.| +..|..++.+... ...+....++++..+--+
T Consensus 84 ~a~~i~e~l~~----~~~~~~~~a~k~l~sls~d~~fa~efi~~~g-l~~L~~liedg~~~~~~~~L~~~L~af~elmeh 158 (713)
T KOG2999|consen 84 YAKRIMEILTE----GNNISKMEALKELDSLSLDPTFAEEFIRCSG-LELLFSLIEDGRVCMSSELLSTSLRAFSELMEH 158 (713)
T ss_pred HHHHHHHHHhC----CCcHHHHHHHHHHhhccccHHHHHHHHhcch-HHHHHHHHHcCccchHHHHHHHHHHHHHHHHhh
Confidence 46678888887 6777777788888888877766666666678 8999999984211 224455666666655432
Q ss_pred CCcHHHHHhhCCcHHHHHHHhc-CCCcchHHHHHHHHHHHhcC-hhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHH
Q 021242 167 PLNRYQVIALGGVQPLFSLVVN-GGRAGIVEDASAVIAQIAGC-EESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVS 244 (315)
Q Consensus 167 ~~~~~~i~~~g~v~~L~~lL~~-~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~ 244 (315)
.-..-..+...+|..+..+... .-+..+...|+..|-++..+ +..++.+.++--+..|+..++.. +..++.+|..
T Consensus 159 gvvsW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~---n~~i~~~aia 235 (713)
T KOG2999|consen 159 GVVSWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVS---NQRIQTCAIA 235 (713)
T ss_pred ceeeeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhc---chHHHHHHHH
Confidence 2211122222333334444321 12445677899999988665 44666666666799999999975 7788888888
Q ss_pred HHHHHhccCCHHHHHHHHH
Q 021242 245 ALLNLVNFGGERAAEEVKE 263 (315)
Q Consensus 245 ~L~~l~~~~~~~~~~~i~~ 263 (315)
.+..+.....++-+.+|.+
T Consensus 236 l~nal~~~a~~~~R~~~~~ 254 (713)
T KOG2999|consen 236 LLNALFRKAPDDKRFEMAK 254 (713)
T ss_pred HHHHHHhhCChHHHHHHHH
Confidence 8888877655555566655
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=95.29 E-value=1.5 Score=39.55 Aligned_cols=193 Identities=19% Similarity=0.149 Sum_probs=110.2
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHh--CCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcc----cch
Q 021242 8 VRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISE--AGSIPYLAEILYSSSHAFQENAAATLLNLSIT----SRD 81 (315)
Q Consensus 8 i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~----~~~ 81 (315)
+...+..+.......|..|+..|........ ....+.+ .-.++.+.+.++.+..+-+..|+.++.-++.. ...
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~-~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRY-LPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence 5567777777788999999999999886643 2233332 44578888888777665566677766555544 222
Q ss_pred hhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCC-CchhhhhhccccHHHHHH--Hhhcc--------CCCh
Q 021242 82 SLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVD-SYRPIIGAKRDIIHSLIE--IIKTR--------NSPL 150 (315)
Q Consensus 82 ~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~--ll~~~--------~~~~ 150 (315)
..+ -....|.|.+++.+.+ ..+..+..++.+|.-++... ..-..+...-..+..++. ..+.. .+++
T Consensus 124 ~ei-~~~~~~~L~~~l~d~s--~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~ 200 (309)
T PF05004_consen 124 EEI-FEELKPVLKRILTDSS--ASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDA 200 (309)
T ss_pred HHH-HHHHHHHHHHHHhCCc--cchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCcc
Confidence 222 2347888889988632 34566666666666665422 111111110011332222 22211 1124
Q ss_pred HHHHHHHHHHHHhcc-CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHH
Q 021242 151 RSVKDALKALFGIAL-YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQI 205 (315)
Q Consensus 151 ~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L 205 (315)
.+...|+.+-.-|.. -+.....-.-...+|.|..+|. +++..++..|-..|.-|
T Consensus 201 ~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~-s~d~~VRiAAGEaiAll 255 (309)
T PF05004_consen 201 ALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLD-SDDVDVRIAAGEAIALL 255 (309)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHH
Confidence 566667655444443 2332222222467899999996 46788877766565554
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.7 Score=47.32 Aligned_cols=259 Identities=13% Similarity=0.082 Sum_probs=151.0
Q ss_pred HHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc--hhhhhhcCchHHHHHHHh
Q 021242 21 QTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR--DSLMSTRGLLDAISHVLR 98 (315)
Q Consensus 21 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~--~~~i~~~~~i~~L~~lL~ 98 (315)
+.|..|-+.......++. .. ..=+|.+++.|-|+.. |..|+..|..+---.+ ..+...-|..|-++++|+
T Consensus 451 teQLTAFevWLd~gse~r---~P---PeQLPiVLQVLLSQvH--RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQ 522 (1387)
T KOG1517|consen 451 TEQLTAFEVWLDYGSESR---TP---PEQLPIVLQVLLSQVH--RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQ 522 (1387)
T ss_pred HHHHHHHHHHHHhccccC---CC---hHhcchHHHHHHHHHH--HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhc
Confidence 455566555555443221 10 1114555665544322 2334455544322222 234346789999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHh-hcCCCchhhhhhccccHHHHHHHhhc-cCCChHHHHHHHHHHHHhccC-CCcHHHHHh
Q 021242 99 HHSTSTSSAAVQSSAATLHSL-LVVDSYRPIIGAKRDIIHSLIEIIKT-RNSPLRSVKDALKALFGIALY-PLNRYQVIA 175 (315)
Q Consensus 99 ~~~~~~~~~~~~~a~~~L~~L-s~~~~~~~~i~~~~g~i~~Lv~ll~~-~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~ 175 (315)
+ +..|++..-+.+=..+ +.++.+..-+...+| -...+..|.. ..-+++=+..|+=+|..++.+ +-.++...+
T Consensus 523 S----~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g-~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~ 597 (1387)
T KOG1517|consen 523 S----SARELRPILVFIWAKILAVDPSCQADLVKENG-YKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLN 597 (1387)
T ss_pred c----chHhhhhhHHHHHHHHHhcCchhHHHHHhccC-ceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhcc
Confidence 7 6778776554444444 445555444444456 4666677663 122345566788888888874 455666677
Q ss_pred hCCcHHHHHHHhcCCCcchHHH-HHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccC
Q 021242 176 LGGVQPLFSLVVNGGRAGIVED-ASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFG 253 (315)
Q Consensus 176 ~g~v~~L~~lL~~~~~~~~~~~-a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~ 253 (315)
.+.+..-+..|.+++ .++... ++-.|..|=. .++.|=.-.+.++..+|+.+|.+. .++++..|+-+|..+-..+
T Consensus 598 ~~li~iCle~lnd~~-~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~---vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 598 GNLIGICLEHLNDDP-EPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDP---VPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred ccHHHHHHHHhcCCc-cHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCc---cHHHHHHHHHHHHHHhccc
Confidence 788887778886323 344433 4445555533 233333334455689999999864 8999999999988887632
Q ss_pred ---CHHHHHHH---HH-----H-ccCcHH----HHHHHHhhCCHHHHHHHHHHHHHHhh
Q 021242 254 ---GERAAEEV---KE-----M-AMQVAD----GIADVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 254 ---~~~~~~~i---~~-----~-~~g~~~----~L~~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
.++....+ +. . .+..++ .++.+++.++|.++...+-.|..+..
T Consensus 674 ~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~ 732 (1387)
T KOG1517|consen 674 SDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVV 732 (1387)
T ss_pred ccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 11111111 10 0 022333 67788889999999998888877743
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.9 Score=37.31 Aligned_cols=86 Identities=15% Similarity=0.147 Sum_probs=64.7
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHh-CCCH-HHHHHHHcCCCHHHHHHHHHHHHhcCcccchh
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISE-AGSI-PYLAEILYSSSHAFQENAAATLLNLSITSRDS 82 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~i-~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~ 82 (315)
+.+++.+...|++++|.+|..|+..|..|...+. ++ .|-+ ..++.++.+++++++..|..++..+.....+.
T Consensus 24 e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~------ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~ 97 (178)
T PF12717_consen 24 EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM------IKVKGQLFSRILKLLVDENPEIRSLARSFFSELLKKRNPN 97 (178)
T ss_pred HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc------eeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccch
Confidence 4578899999999999999999999999986542 22 3444 88888999999999999999999988774333
Q ss_pred hhhhcCchHHHHHHHh
Q 021242 83 LMSTRGLLDAISHVLR 98 (315)
Q Consensus 83 ~i~~~~~i~~L~~lL~ 98 (315)
.+ ...++.++..|.
T Consensus 98 ~i--~~~~~e~i~~l~ 111 (178)
T PF12717_consen 98 II--YNNFPELISSLN 111 (178)
T ss_pred HH--HHHHHHHHHHHh
Confidence 22 123455555554
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.35 Score=48.27 Aligned_cols=103 Identities=18% Similarity=0.205 Sum_probs=74.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhh
Q 021242 50 IPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPII 129 (315)
Q Consensus 50 i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i 129 (315)
+..+.+=+++.++.+|..|++++..+= .+++ -...++++.+.+.+ +++.++..|+-++..+=.. .+..+
T Consensus 94 vNti~kDl~d~N~~iR~~AlR~ls~l~---~~el--~~~~~~~ik~~l~d----~~ayVRk~Aalav~kly~l--d~~l~ 162 (757)
T COG5096 94 VNTIQKDLQDPNEEIRGFALRTLSLLR---VKEL--LGNIIDPIKKLLTD----PHAYVRKTAALAVAKLYRL--DKDLY 162 (757)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHhcC---hHHH--HHHHHHHHHHHccC----CcHHHHHHHHHHHHHHHhc--CHhhh
Confidence 444445556788899999999886652 1222 22367888888887 7889999999888886532 23444
Q ss_pred hhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccC
Q 021242 130 GAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALY 166 (315)
Q Consensus 130 ~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~ 166 (315)
.+ .|.+..+..++. +.+|.+..+|+.+|..+...
T Consensus 163 ~~-~g~~~~l~~l~~--D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 163 HE-LGLIDILKELVA--DSDPIVIANALASLAEIDPE 196 (757)
T ss_pred hc-ccHHHHHHHHhh--CCCchHHHHHHHHHHHhchh
Confidence 44 466788888887 56899999999999987754
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.22 E-value=1.5 Score=45.03 Aligned_cols=225 Identities=15% Similarity=0.055 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHH-HhcCcccc--hhhhhhcCchHHHHHHH
Q 021242 21 QTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATL-LNLSITSR--DSLMSTRGLLDAISHVL 97 (315)
Q Consensus 21 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L-~~la~~~~--~~~i~~~~~i~~L~~lL 97 (315)
.=|..|+..|..+..-.+=.-..-..-|+.|-+++||+++..+++-.-+-+= .-||.++. ..++ +.+|-.-.+++|
T Consensus 485 vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLv-Ke~g~~YF~~vL 563 (1387)
T KOG1517|consen 485 VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLV-KENGYKYFLQVL 563 (1387)
T ss_pred HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHH-hccCceeEEEEe
Confidence 3466777777777766554445555689999999999998887765433333 34666654 3444 555555555566
Q ss_pred hcCCCCCCHHHHHHHHHHHHHhhc-CCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccC-CCcHHHHHh
Q 021242 98 RHHSTSTSSAAVQSSAATLHSLLV-VDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALY-PLNRYQVIA 175 (315)
Q Consensus 98 ~~~~~~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~ 175 (315)
.... .-+++-+..|+.+|..+.. ++-+.....+ +++|..-+..+.++ ..+=.+..++-+|..|=.+ ++.|-.=++
T Consensus 564 ~~~~-~~~~EqrtmaAFVLAviv~nf~lGQ~acl~-~~li~iCle~lnd~-~~pLLrQW~~icLG~LW~d~~~Arw~G~r 640 (1387)
T KOG1517|consen 564 DPSQ-AIPPEQRTMAAFVLAVIVRNFKLGQKACLN-GNLIGICLEHLNDD-PEPLLRQWLCICLGRLWEDYDEARWSGRR 640 (1387)
T ss_pred cCcC-CCCHHHHHHHHHHHHHHHcccchhHHHhcc-ccHHHHHHHHhcCC-ccHHHHHHHHHHHHHHhhhcchhhhcccc
Confidence 5311 1345777788888888885 4444444433 46566555566521 1344556666777777664 445555567
Q ss_pred hCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-----ChhhHHHH---Hh--------cC----CHHHHHHHhhcCCCCC
Q 021242 176 LGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-----CEESVDEF---KK--------CC----GIGVLVDLLDLGTGSG 235 (315)
Q Consensus 176 ~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-----~~~~~~~i---~~--------~~----~i~~Lv~ll~~~~~~~ 235 (315)
.++...|+.+|. ++-++++..|.-+|..+-+ .++....+ ++ +. |...++.+++.+ +
T Consensus 641 ~~AhekL~~~Ls-D~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg---s 716 (1387)
T KOG1517|consen 641 DNAHEKLILLLS-DPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG---S 716 (1387)
T ss_pred ccHHHHHHHHhc-CccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc---c
Confidence 899999999995 6777888887777777644 22322222 11 11 223666777776 7
Q ss_pred hhHHHHHHHHHHHHhccC
Q 021242 236 HRVKENAVSALLNLVNFG 253 (315)
Q Consensus 236 ~~~~~~a~~~L~~l~~~~ 253 (315)
+-++...+.+|..+...+
T Consensus 717 plvr~ev~v~ls~~~~g~ 734 (1387)
T KOG1517|consen 717 PLVRTEVVVALSHFVVGY 734 (1387)
T ss_pred hHHHHHHHHHHHHHHHhh
Confidence 777777777777776533
|
|
| >PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.67 Score=42.15 Aligned_cols=195 Identities=11% Similarity=0.076 Sum_probs=134.2
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhH-----HHHh--CCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcc
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRP-----MISE--AGSIPYLAEILYSSSHAFQENAAATLLNLSIT 78 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~-----~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~ 78 (315)
+.+..|+..|..-+.+.|..++....++.......+. .+.. ..++..|+.-- +++++--.+-..|+.+..+
T Consensus 76 dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g~mlRec~k~ 153 (335)
T PF08569_consen 76 DLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCGDMLRECIKH 153 (335)
T ss_dssp THHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHHHHHHHHHhh
Confidence 4567788888888899999999999988877655433 3332 23333333333 3556666788888999988
Q ss_pred cc-hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc-CCCchhh-hhhc-cccHHHHHHHhhccCCChHHHH
Q 021242 79 SR-DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV-VDSYRPI-IGAK-RDIIHSLIEIIKTRNSPLRSVK 154 (315)
Q Consensus 79 ~~-~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~-~~~~~~~-i~~~-~g~i~~Lv~ll~~~~~~~~~~~ 154 (315)
+. .+++.....+..+.++... ++-++...|..++..|-. ++..... +... ..++...-.+|. +++.-.+.
T Consensus 154 e~l~~~iL~~~~f~~ff~~~~~----~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~--s~NYvtkr 227 (335)
T PF08569_consen 154 ESLAKIILYSECFWKFFKYVQL----PNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLE--SSNYVTKR 227 (335)
T ss_dssp HHHHHHHHTSGGGGGHHHHTTS----SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT---SSHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHhcC----CccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcc--CCCeEeeh
Confidence 76 5565567788888888886 688988889999998664 4433222 2221 245666677888 56888999
Q ss_pred HHHHHHHHhccCCCcHHHHHh----hCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcCh
Q 021242 155 DALKALFGIALYPLNRYQVIA----LGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCE 209 (315)
Q Consensus 155 ~a~~aL~~Ls~~~~~~~~i~~----~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~ 209 (315)
.+++.|..|-.++.|...|.+ ..-+..++.+|+ +++..++-.|.-+......+|
T Consensus 228 qslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~-d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 228 QSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLR-DKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT--S-HHHHHHHHHHHHHHHH-S
T ss_pred hhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhc-CcchhhhHHHHHHHHHHHhCC
Confidence 999999999999999876654 244666777775 577889999998888765544
|
In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A. |
| >PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.15 Score=44.82 Aligned_cols=192 Identities=13% Similarity=0.106 Sum_probs=109.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCcccc-hhhhhhcC--chHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCch
Q 021242 50 IPYLAEILYSSSHAFQENAAATLLNLSITSR-DSLMSTRG--LLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYR 126 (315)
Q Consensus 50 i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~-~~~i~~~~--~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~ 126 (315)
+..+...+.+..++-+.-++..++-+..+.+ .......+ ....+..++........+..+..+++++.|+-.+...+
T Consensus 65 ~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~ 144 (268)
T PF08324_consen 65 LILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGR 144 (268)
T ss_dssp HHHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCH
T ss_pred HHHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccH
Confidence 4556666666555556777788877777765 34443222 35666666664332346677888999999998888888
Q ss_pred hhhhhccc-cHHHHHHHhhccCC--ChHHHHHHHHHHHHhccC--CCcHHHHHhhCCcHHHHHHHhcC-CCcchHHHHHH
Q 021242 127 PIIGAKRD-IIHSLIEIIKTRNS--PLRSVKDALKALFGIALY--PLNRYQVIALGGVQPLFSLVVNG-GRAGIVEDASA 200 (315)
Q Consensus 127 ~~i~~~~g-~i~~Lv~ll~~~~~--~~~~~~~a~~aL~~Ls~~--~~~~~~i~~~g~v~~L~~lL~~~-~~~~~~~~a~~ 200 (315)
..+....+ .+...+..+..... +..++..++..+.|++.. ......-.+...+..+.+.+... .+++....++.
T Consensus 145 ~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~Lv 224 (268)
T PF08324_consen 145 QLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLV 224 (268)
T ss_dssp HHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHH
T ss_pred HHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence 87776433 23333333331100 456777888889999851 11100001112244455533222 46778888999
Q ss_pred HHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHH
Q 021242 201 VIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENA 242 (315)
Q Consensus 201 ~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a 242 (315)
+|.+|...+.........=++...+...... ...+++++.+
T Consensus 225 AlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~-~~e~ri~~v~ 265 (268)
T PF08324_consen 225 ALGTLLSSSDSAKQLAKSLDVKSVLSKKANK-SKEPRIKEVA 265 (268)
T ss_dssp HHHHHHCCSHHHHHHCCCCTHHHHHHHHHHH-TTSHHHHHHH
T ss_pred HHHHHhccChhHHHHHHHcChHHHHHHHHhc-ccchHHHHHh
Confidence 9999987665555554433444444433221 1256666554
|
It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A. |
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.72 E-value=2.3 Score=42.31 Aligned_cols=269 Identities=12% Similarity=0.138 Sum_probs=150.6
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCC--------HHHHHHHHHHHHhcC
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSS--------HAFQENAAATLLNLS 76 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~--------~~~~~~a~~~L~~la 76 (315)
+...-.+++.+.+++.+.+.-.+..+..++.. +..-........+|.+........ ..+...++.+=.
T Consensus 635 revmlil~rEf~sPDeemkkivLKVv~qcc~t-~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~--- 710 (1172)
T KOG0213|consen 635 REVMLILIREFGSPDEEMKKIVLKVVKQCCAT-DGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAA--- 710 (1172)
T ss_pred HHHHHHHHHhhCCChHHHHHHHHHHHHHHhcc-cCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHH---
Confidence 34455677777888878877777777777754 233334444455666655553210 011111111110
Q ss_pred cccchhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcC---CCchhhhhhccccHHHHHHHhhccCCChHHH
Q 021242 77 ITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVV---DSYRPIIGAKRDIIHSLIEIIKTRNSPLRSV 153 (315)
Q Consensus 77 ~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~---~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~ 153 (315)
.+.....+..++.=+++ +.++.+...++++..+-.. .+.-..+.+ -++..++-.++..+.+..+.
T Consensus 711 ------KvG~~~~v~R~v~~lkd----e~e~yrkm~~etv~ri~~~lg~~diderleE--~lidgil~Afqeqtt~d~vm 778 (1172)
T KOG0213|consen 711 ------KVGSDPIVSRVVLDLKD----EPEQYRKMVAETVSRIVGRLGAADIDERLEE--RLIDGILYAFQEQTTEDSVM 778 (1172)
T ss_pred ------HhCchHHHHHHhhhhcc----ccHHHHHHHHHHHHHHHhccccccccHHHHH--HHHHHHHHHHHhcccchhhh
Confidence 01122235555555665 6777887777777665432 122222222 34566666565322333455
Q ss_pred HHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCH-HHHHHHhhcCC
Q 021242 154 KDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGI-GVLVDLLDLGT 232 (315)
Q Consensus 154 ~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i-~~Lv~ll~~~~ 232 (315)
.....+..| +.....+..+ .-.+...+..|+ ++.+.+++.|+.+++.++.--.++.+....|-+ -.|...|..
T Consensus 779 l~gfg~V~~-~lg~r~kpyl--pqi~stiL~rLn-nksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylge-- 852 (1172)
T KOG0213|consen 779 LLGFGTVVN-ALGGRVKPYL--PQICSTILWRLN-NKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGE-- 852 (1172)
T ss_pred hhhHHHHHH-HHhhccccch--HHHHHHHHHHhc-CCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCc--
Confidence 566666655 2222211111 122345566665 567888999999988887644444333322311 345566654
Q ss_pred CCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhCCC
Q 021242 233 GSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDDGN 299 (315)
Q Consensus 233 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~~~ 299 (315)
+++++....++++..|+..-. - ..|..+-.|.+|.|..++++.-.++++++..++-.+..-+.
T Consensus 853 -eypEvLgsILgAikaI~nvig-m--~km~pPi~dllPrltPILknrheKVqen~IdLvg~Iadrgp 915 (1172)
T KOG0213|consen 853 -EYPEVLGSILGAIKAIVNVIG-M--TKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGP 915 (1172)
T ss_pred -ccHHHHHHHHHHHHHHHHhcc-c--cccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCc
Confidence 388888888888777764211 0 11221126899999999999999999999999888765433
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.039 Score=31.18 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=24.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCc
Q 021242 50 IPYLAEILYSSSHAFQENAAATLLNLSI 77 (315)
Q Consensus 50 i~~Lv~lL~~~~~~~~~~a~~~L~~la~ 77 (315)
+|.++++++++++++|..|+.+|.+++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 7999999999999999999999988753
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.69 E-value=3.1 Score=37.29 Aligned_cols=225 Identities=17% Similarity=0.143 Sum_probs=137.7
Q ss_pred CCCCHHHHHHHHHHHHHHhccCchhhHHH-HhCCCHHHHHHHHcC--CCHHHHHHHHHHHHhcCcccc-hhhh-hhcCch
Q 021242 16 GSVSEQTRAEALAELRLLSKHDAEIRPMI-SEAGSIPYLAEILYS--SSHAFQENAAATLLNLSITSR-DSLM-STRGLL 90 (315)
Q Consensus 16 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i-~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~~la~~~~-~~~i-~~~~~i 90 (315)
++-++-.+.-|+.++.++... ++.|+.+ .++..-..++..++. .+..+|=+.+-++|.+++++. .+.+ .--+.+
T Consensus 159 Q~i~~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli 237 (432)
T COG5231 159 QLIDFLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLI 237 (432)
T ss_pred HHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 344566788888888888754 6666544 456566777888865 345688889999999998875 2222 123457
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc-CCCc--hhhhhhccccHHHHHHHhhccC-CChHHHHHH---HHHHH--
Q 021242 91 DAISHVLRHHSTSTSSAAVQSSAATLHSLLV-VDSY--RPIIGAKRDIIHSLIEIIKTRN-SPLRSVKDA---LKALF-- 161 (315)
Q Consensus 91 ~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~-~~~~--~~~i~~~~g~i~~Lv~ll~~~~-~~~~~~~~a---~~aL~-- 161 (315)
..|+++.+. .....+...+++++.|+.. .+.. ...+.. +. +.+-+++|.... .|.+.+..- -..|-
T Consensus 238 ~dli~iVk~---~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll-~~-~~k~vq~L~erkysDEel~~di~~i~s~l~~~ 312 (432)
T COG5231 238 NDLIAIVKE---RAKEKVLRLCCGIVANVLDKSPKGYIFSPLLL-ND-ISKCVQVLLERKYSDEELVIDIERIRSRLVQN 312 (432)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHhcccccchhhhhHhh-cc-hHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh
Confidence 777888874 1233455578888888875 3221 222222 34 566666665321 122222110 01111
Q ss_pred ------------Hh-----ccC---------CCcHHHHHh--hCCcHHHHHHHhcCCCcc-hHHHHHHHHHHHh-cChhh
Q 021242 162 ------------GI-----ALY---------PLNRYQVIA--LGGVQPLFSLVVNGGRAG-IVEDASAVIAQIA-GCEES 211 (315)
Q Consensus 162 ------------~L-----s~~---------~~~~~~i~~--~g~v~~L~~lL~~~~~~~-~~~~a~~~L~~L~-~~~~~ 211 (315)
.| +-+ .+|...+.+ -..+..|.++++.. ++. ...-||.=+..+- ..|++
T Consensus 313 ~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n-~~nt~i~vAc~Di~~~Vr~~PE~ 391 (432)
T COG5231 313 TKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSN-NPNTWICVACSDIFQLVRASPEI 391 (432)
T ss_pred hhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcC-CCCceEeeeHhhHHHHHHhCchH
Confidence 00 101 234444443 25677888888643 333 3344555444443 47999
Q ss_pred HHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHh
Q 021242 212 VDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLV 250 (315)
Q Consensus 212 ~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~ 250 (315)
+..+...|+=..+..++.+. ++++|-.|+.++..+-
T Consensus 392 ~~vl~Kyg~k~~im~L~nh~---d~~VkfeAl~a~q~~i 427 (432)
T COG5231 392 NAVLSKYGVKEIIMNLINHD---DDDVKFEALQALQTCI 427 (432)
T ss_pred HHHHHHhhhHHHHHHHhcCC---CchhhHHHHHHHHHHH
Confidence 99999999989999999986 8999999999887653
|
|
| >PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.37 Score=41.87 Aligned_cols=98 Identities=19% Similarity=0.165 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcC-CCHHHHHHHHHHHHhcCccc-c-hhhhhhcCchHHHHHHH
Q 021242 21 QTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYS-SSHAFQENAAATLLNLSITS-R-DSLMSTRGLLDAISHVL 97 (315)
Q Consensus 21 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~la~~~-~-~~~i~~~~~i~~L~~lL 97 (315)
.....|+..|.-++--.+..|..+.+...+..|+++|.. ..+.++..++.+|..+-.+. . .+.+.+.+|+..++.++
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 356678899998887889999999999999999999954 56789999999997766654 3 35677999999999999
Q ss_pred hcCCCCCCHHHHHHHHHHHHHhh
Q 021242 98 RHHSTSTSSAAVQSSAATLHSLL 120 (315)
Q Consensus 98 ~~~~~~~~~~~~~~a~~~L~~Ls 120 (315)
++.+ .+.+++..+...|.-..
T Consensus 186 k~~~--~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 186 KSKS--TDRELRLKCIEFLYFYL 206 (257)
T ss_pred cccc--ccHHHhHHHHHHHHHHH
Confidence 9754 35677777777776444
|
Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], []. |
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.077 Score=29.95 Aligned_cols=28 Identities=21% Similarity=0.227 Sum_probs=25.1
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhc
Q 021242 8 VRSLVTKLGSVSEQTRAEALAELRLLSK 35 (315)
Q Consensus 8 i~~Lv~~L~~~~~~~~~~a~~~L~~l~~ 35 (315)
+|.++++++++++++|..|+.+|..+++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 6889999999999999999999999875
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=94.64 E-value=1.5 Score=39.17 Aligned_cols=161 Identities=17% Similarity=0.180 Sum_probs=103.5
Q ss_pred HHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhh---------
Q 021242 13 TKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSL--------- 83 (315)
Q Consensus 13 ~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~--------- 83 (315)
..+.++++.+|..|+++|.-++--+.+ +.. ..++.+...++.+++.++..|+++++.+...-+...
T Consensus 34 P~v~~~~~~vR~~al~cLGl~~Lld~~----~a~-~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~ 108 (298)
T PF12719_consen 34 PAVQSSDPAVRELALKCLGLCCLLDKE----LAK-EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDE 108 (298)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhChH----HHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCc
Confidence 566889999999999999999876653 222 237788888877788999999999988765422111
Q ss_pred -hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhcc-C-CChHHHHHHHH-H
Q 021242 84 -MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTR-N-SPLRSVKDALK-A 159 (315)
Q Consensus 84 -i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~-~-~~~~~~~~a~~-a 159 (315)
......++.+.+++.+ .+++++..++..+..|-..+-... ...++..|+-+.-++ + ++... +.++. .
T Consensus 109 ~~~~~~l~~~l~~~l~~----~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~L-rQ~L~~F 179 (298)
T PF12719_consen 109 SVDSKSLLKILTKFLDS----ENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRL-RQCLSVF 179 (298)
T ss_pred cchHhHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHH-HHHHHHH
Confidence 1133466777778876 678899999999998875443222 113344444433322 1 22333 44443 3
Q ss_pred HHHhccCCCcHHHHHhhCCcHHHHHHHh
Q 021242 160 LFGIALYPLNRYQVIALGGVQPLFSLVV 187 (315)
Q Consensus 160 L~~Ls~~~~~~~~i~~~g~v~~L~~lL~ 187 (315)
+-..+......+..+..+.+|.+..+..
T Consensus 180 fp~y~~s~~~~Q~~l~~~f~~~l~~~~~ 207 (298)
T PF12719_consen 180 FPVYASSSPENQERLAEAFLPTLRTLSN 207 (298)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence 4455655544455566788888877775
|
|
| >KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.8 Score=43.69 Aligned_cols=152 Identities=20% Similarity=0.179 Sum_probs=103.0
Q ss_pred HHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCc----chHHHHHHHHHHHhcChhhH
Q 021242 137 HSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRA----GIVEDASAVIAQIAGCEESV 212 (315)
Q Consensus 137 ~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~----~~~~~a~~~L~~L~~~~~~~ 212 (315)
..+..++. +++...+..|...|..++.++.-...+++..++..|.+++.+ +.. .+...++..+..+....-..
T Consensus 86 ~~i~e~l~--~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~lied-g~~~~~~~~L~~~L~af~elmehgvvs 162 (713)
T KOG2999|consen 86 KRIMEILT--EGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIED-GRVCMSSELLSTSLRAFSELMEHGVVS 162 (713)
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHc-CccchHHHHHHHHHHHHHHHHhhceee
Confidence 45667777 567788888999999999999999999999999999999974 322 22233444444432221100
Q ss_pred HHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHH
Q 021242 213 DEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLK 292 (315)
Q Consensus 213 ~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~ 292 (315)
=..+...+|.....+.... ..+..+-..|+.+|-++..++ +...+.+.+ .--++.|+..++..+.++..+|..+++
T Consensus 163 W~~~~~~fV~~~a~~V~~~-~~~a~~~~~AL~~LE~~vl~s-~~~~~~v~e--ev~i~~li~hlq~~n~~i~~~aial~n 238 (713)
T KOG2999|consen 163 WESVSNDFVVSMASYVNAK-REDANTLLAALQMLESLVLGS-DTLRQLVAE--EVPIETLIRHLQVSNQRIQTCAIALLN 238 (713)
T ss_pred eeecccHHHHHHHHHHhhh-hhcccchHHHHHHHHHHHhCC-hHHHHHHHh--cCcHHHHHHHHHhcchHHHHHHHHHHH
Confidence 0011223455555555332 235667778999999987643 445555655 777999999999999999999999888
Q ss_pred HHh
Q 021242 293 ILV 295 (315)
Q Consensus 293 ~l~ 295 (315)
.+-
T Consensus 239 al~ 241 (713)
T KOG2999|consen 239 ALF 241 (713)
T ss_pred HHH
Confidence 763
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.38 E-value=4.8 Score=42.16 Aligned_cols=252 Identities=15% Similarity=0.142 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCccc----c-hhhhhhcCchHHHH
Q 021242 20 EQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITS----R-DSLMSTRGLLDAIS 94 (315)
Q Consensus 20 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~----~-~~~i~~~~~i~~L~ 94 (315)
.+.+.+|+..|..++..-. ....-..++|-++.++.+++.++|..|+.+|..+-..- + +..+..+..+|.|-
T Consensus 437 ~~tK~~ALeLl~~lS~~i~---de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~ 513 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYID---DEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLN 513 (1431)
T ss_pred chhHHHHHHHHHHHhhhcc---hHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhH
Confidence 4789999999999985432 23334678999999999999999999999986654332 2 23344667888888
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHhhcC------------------CCch-hhh--hhccc------cHHHHHH-Hhhcc
Q 021242 95 HVLRHHSTSTSSAAVQSSAATLHSLLVV------------------DSYR-PII--GAKRD------IIHSLIE-IIKTR 146 (315)
Q Consensus 95 ~lL~~~~~~~~~~~~~~a~~~L~~Ls~~------------------~~~~-~~i--~~~~g------~i~~Lv~-ll~~~ 146 (315)
.++.+. ...-++..-|..|..||.. +.+. ... ....+ .+...+. ++.
T Consensus 514 ~l~~d~---~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLls-- 588 (1431)
T KOG1240|consen 514 HLLNDS---SAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLS-- 588 (1431)
T ss_pred hhhccC---ccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHc--
Confidence 888751 1222333333333333311 1111 000 00001 0222222 222
Q ss_pred CCChHHHHHHHHHHHHhccCCCcHHHHHhh----CCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHH
Q 021242 147 NSPLRSVKDALKALFGIALYPLNRYQVIAL----GGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIG 222 (315)
Q Consensus 147 ~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~----g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~ 222 (315)
..++-++..-+..|.-||. .+.+. =.++.|+.+|. +.+..++-.-...+.-+|..- |.+. ++..-+|
T Consensus 589 d~~~~Vkr~Lle~i~~LC~------FFGk~ksND~iLshLiTfLN-DkDw~LR~aFfdsI~gvsi~V-G~rs-~seyllP 659 (1431)
T KOG1240|consen 589 DSPPIVKRALLESIIPLCV------FFGKEKSNDVILSHLITFLN-DKDWRLRGAFFDSIVGVSIFV-GWRS-VSEYLLP 659 (1431)
T ss_pred CCchHHHHHHHHHHHHHHH------HhhhcccccchHHHHHHHhc-CccHHHHHHHHhhccceEEEE-eeee-HHHHHHH
Confidence 1223333333344555443 22221 22555666664 333333322222222222110 0000 1223356
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhh
Q 021242 223 VLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 223 ~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
-|.+-|.++ .+.+-..|+++|.-|++.+- -.+..+.+ .++-...++-.++.=+|..+..++....+
T Consensus 660 Ll~Q~ltD~---EE~Viv~aL~~ls~Lik~~l-l~K~~v~~----i~~~v~PlL~hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 660 LLQQGLTDG---EEAVIVSALGSLSILIKLGL-LRKPAVKD----ILQDVLPLLCHPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred HHHHhccCc---chhhHHHHHHHHHHHHHhcc-cchHHHHH----HHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence 666677665 77888899999999987542 11223322 55566677778888899988886655443
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.16 E-value=1.4 Score=43.90 Aligned_cols=166 Identities=14% Similarity=0.154 Sum_probs=97.3
Q ss_pred HHHcCCCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccc
Q 021242 55 EILYSSSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRD 134 (315)
Q Consensus 55 ~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g 134 (315)
.+|.|.++.+..+++.+.+.+|-..+... .+++|+++|++ +.+++......|.-++.-. .+
T Consensus 294 pLl~S~n~sVVmA~aql~y~lAP~~~~~~-----i~kaLvrLLrs-----~~~vqyvvL~nIa~~s~~~---------~~ 354 (968)
T KOG1060|consen 294 PLLQSRNPSVVMAVAQLFYHLAPKNQVTK-----IAKALVRLLRS-----NREVQYVVLQNIATISIKR---------PT 354 (968)
T ss_pred HHHhcCCcHHHHHHHhHHHhhCCHHHHHH-----HHHHHHHHHhc-----CCcchhhhHHHHHHHHhcc---------hh
Confidence 34456778899999999999985554333 37889999985 3455554444444433211 12
Q ss_pred cHHHHH-HHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHH
Q 021242 135 IIHSLI-EIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVD 213 (315)
Q Consensus 135 ~i~~Lv-~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~ 213 (315)
++.+-+ ++.-.+.+...++..=+..|.+|+. ..|...+ ++.+...+. +++..+...+..+|..++.. ..
T Consensus 355 lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~-esni~~I-----LrE~q~YI~-s~d~~faa~aV~AiGrCA~~---~~ 424 (968)
T KOG1060|consen 355 LFEPHLKSFFVRSSDPTQVKILKLEILSNLAN-ESNISEI-----LRELQTYIK-SSDRSFAAAAVKAIGRCASR---IG 424 (968)
T ss_pred hhhhhhhceEeecCCHHHHHHHHHHHHHHHhh-hccHHHH-----HHHHHHHHh-cCchhHHHHHHHHHHHHHHh---hC
Confidence 222222 2222113344555566677777764 3344443 345666665 34445666666666665442 11
Q ss_pred HHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccC
Q 021242 214 EFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFG 253 (315)
Q Consensus 214 ~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~ 253 (315)
. +...++..|+.++++. +..+-..++..+..|-...
T Consensus 425 s-v~~tCL~gLv~Llssh---de~Vv~eaV~vIk~Llq~~ 460 (968)
T KOG1060|consen 425 S-VTDTCLNGLVQLLSSH---DELVVAEAVVVIKRLLQKD 460 (968)
T ss_pred c-hhhHHHHHHHHHHhcc---cchhHHHHHHHHHHHHhhC
Confidence 1 2234678899999976 6677777777778776543
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=94.07 E-value=4.4 Score=36.54 Aligned_cols=185 Identities=14% Similarity=0.143 Sum_probs=102.8
Q ss_pred CCHHHHHHHHHHHHHhhcCCCchhhhhh-ccccHHHHHHHhhccCCChHHHHHHHHHHHHhccC---CCcHHHHHhhCCc
Q 021242 104 TSSAAVQSSAATLHSLLVVDSYRPIIGA-KRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALY---PLNRYQVIALGGV 179 (315)
Q Consensus 104 ~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~---~~~~~~i~~~g~v 179 (315)
.+...|+.+...+.++.........+.. ...+++.+.+.++ .+..+-+.-|++++.-++.. .+....++ ....
T Consensus 55 K~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lk--kg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~-~~~~ 131 (309)
T PF05004_consen 55 KSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLK--KGKSEEQALAARALALLALTLGAGEDSEEIF-EELK 131 (309)
T ss_pred cCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc--cCCHHHHHHHHHHHHHHhhhcCCCccHHHHH-HHHH
Confidence 3568888898888887754443333322 2345777788887 45555556677877777764 23444444 4678
Q ss_pred HHHHHHHhcCCCc--chHHHHH---HHHHHHhcC-hhhHHHHHhcCCHHHHHH--HhhcCC-------CCChhHHHHHHH
Q 021242 180 QPLFSLVVNGGRA--GIVEDAS---AVIAQIAGC-EESVDEFKKCCGIGVLVD--LLDLGT-------GSGHRVKENAVS 244 (315)
Q Consensus 180 ~~L~~lL~~~~~~--~~~~~a~---~~L~~L~~~-~~~~~~i~~~~~i~~Lv~--ll~~~~-------~~~~~~~~~a~~ 244 (315)
|.|.+.+. ++.. ..+..++ +++..++.. ++......+ .+..++. ..+.+. ..++.+.-.|+.
T Consensus 132 ~~L~~~l~-d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~ 208 (309)
T PF05004_consen 132 PVLKRILT-DSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAALVAAALS 208 (309)
T ss_pred HHHHHHHh-CCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHHHHHHHH
Confidence 88888886 3333 3334444 444444332 222221111 1221111 222110 012344444444
Q ss_pred HHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhC
Q 021242 245 ALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDD 297 (315)
Q Consensus 245 ~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~ 297 (315)
+-.-|...-++....... ...++.|..+|++++..||..|...+..+-+.
T Consensus 209 aW~lLlt~~~~~~~~~~~---~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 209 AWALLLTTLPDSKLEDLL---EEALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred HHHHHHhcCCHHHHHHHH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 433333322222222333 45799999999999999999999988877553
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.97 E-value=3.1 Score=42.00 Aligned_cols=265 Identities=14% Similarity=0.091 Sum_probs=148.4
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhcc-CchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhh
Q 021242 8 VRSLVTKLGSVSEQTRAEALAELRLLSKH-DAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMST 86 (315)
Q Consensus 8 i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~ 86 (315)
++.....++....+.+.+.......++.. +...+..+...-++|.+-.+..+.+..++...+.....++---++.-. -
T Consensus 357 ~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~t-i 435 (759)
T KOG0211|consen 357 VPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERT-I 435 (759)
T ss_pred hhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcC-c
Confidence 45556666666666776666666666532 223456666667788888888777777777666665555422221100 1
Q ss_pred cCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCC-chhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhcc
Q 021242 87 RGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDS-YRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL 165 (315)
Q Consensus 87 ~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~ 165 (315)
....|.++..+++ ..++++.+..+.+..+-...+ ....... ...+|.++.+-. .....++....+.+..++.
T Consensus 436 ~~llp~~~~~l~d----e~~~V~lnli~~ls~~~~v~~v~g~~~~s-~slLp~i~el~~--d~~wRvr~ail~~ip~la~ 508 (759)
T KOG0211|consen 436 SELLPLLIGNLKD----EDPIVRLNLIDKLSLLEEVNDVIGISTVS-NSLLPAIVELAE--DLLWRVRLAILEYIPQLAL 508 (759)
T ss_pred cccChhhhhhcch----hhHHHHHhhHHHHHHHHhccCcccchhhh-hhhhhhhhhhcc--chhHHHHHHHHHHHHHHHH
Confidence 2246666667776 677888887777765554332 2233333 244788888876 3356777777888887776
Q ss_pred CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc---ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHH
Q 021242 166 YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG---CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENA 242 (315)
Q Consensus 166 ~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~---~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a 242 (315)
... ..+...-..+.+..-+. +...++++.|...+..++. ..+.+.. -++.++.+..++ +...+...
T Consensus 509 q~~--~~~~~~~~~~l~~~~l~-d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~-----~i~k~L~~~~q~---~y~~R~t~ 577 (759)
T KOG0211|consen 509 QLG--VEFFDEKLAELLRTWLP-DHVYSIREAAARNLPALVETFGSEWARLE-----EIPKLLAMDLQD---NYLVRMTT 577 (759)
T ss_pred hhh--hHHhhHHHHHHHHhhhh-hhHHHHHHHHHHHhHHHHHHhCcchhHHH-----hhHHHHHHhcCc---ccchhhHH
Confidence 432 12221111111122221 1123566666666665543 1222222 256666666543 34444443
Q ss_pred HHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhC
Q 021242 243 VSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDD 297 (315)
Q Consensus 243 ~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~ 297 (315)
...+.-++.-.+ .++.. ...+|.+..+..+..+.||-++++.|..+...
T Consensus 578 l~si~~la~v~g----~ei~~--~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~ 626 (759)
T KOG0211|consen 578 LFSIHELAEVLG----QEITC--EDLLPVFLDLVKDPVANVRINVAKHLPKILKL 626 (759)
T ss_pred HHHHHHHHHHhc----cHHHH--HHHhHHHHHhccCCchhhhhhHHHHHHHHHhh
Confidence 333333332111 23443 45778888888888999999999988777644
|
|
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.12 Score=39.35 Aligned_cols=73 Identities=14% Similarity=0.217 Sum_probs=55.9
Q ss_pred cccHHHHHHHhhccCCChHHHHHHHHHHHHhcc-CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc
Q 021242 133 RDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL-YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG 207 (315)
Q Consensus 133 ~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~ 207 (315)
..++..|+++|..+ .++.+...|+.-|..++. .|..|..+-+.|+=..+++++. +++++++..|+.++..+..
T Consensus 42 ~~llk~L~~lL~~s-~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~-h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 42 FELLKKLIKLLDKS-DDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMN-HEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp GHHHHHHHHHH-SH-HHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS--SSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccC-CCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhc-CCCHHHHHHHHHHHHHHHH
Confidence 35688999999642 467788889999999998 5666666666788888899995 6899999999988877643
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.34 Score=48.35 Aligned_cols=103 Identities=20% Similarity=0.265 Sum_probs=77.5
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhh
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMS 85 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~ 85 (315)
-.++.+...|+++++.+|.-|++++..+-. ++ .-..+++++.+++.+.++-+|..|+-++.++-.-+. ....
T Consensus 92 LavNti~kDl~d~N~~iR~~AlR~ls~l~~--~e-----l~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~-~l~~ 163 (757)
T COG5096 92 LAVNTIQKDLQDPNEEIRGFALRTLSLLRV--KE-----LLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK-DLYH 163 (757)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHhcCh--HH-----HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH-hhhh
Confidence 356778888899999999999988887732 22 223458899999999999999999999988754333 3334
Q ss_pred hcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhh
Q 021242 86 TRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLL 120 (315)
Q Consensus 86 ~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls 120 (315)
+.|.+..+..++.+ .+|.+..+|..+|..+-
T Consensus 164 ~~g~~~~l~~l~~D----~dP~Vi~nAl~sl~~i~ 194 (757)
T COG5096 164 ELGLIDILKELVAD----SDPIVIANALASLAEID 194 (757)
T ss_pred cccHHHHHHHHhhC----CCchHHHHHHHHHHHhc
Confidence 66777788888876 67788878877777654
|
|
| >KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] | Back alignment and domain information |
|---|
Probab=93.45 E-value=10 Score=38.68 Aligned_cols=223 Identities=13% Similarity=0.073 Sum_probs=135.9
Q ss_pred CCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcC-CCHHHHHHHHHHHHhcCcccchhh-hhhcCchHHHH
Q 021242 17 SVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYS-SSHAFQENAAATLLNLSITSRDSL-MSTRGLLDAIS 94 (315)
Q Consensus 17 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~la~~~~~~~-i~~~~~i~~L~ 94 (315)
+..|..-..+.+++..++.....+...+.. .+...+..+.- ..+-++-.|+.++.-.+ +...+ -..++.++-|+
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~--fl~~~v~~l~~~~~~~~ki~a~~~~~~~~--~~~vl~~~~p~ild~L~ 536 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQLLQH--FLNATVNALTMDVPPPVKISAVRAFCGYC--KVKVLLSLQPMILDGLL 536 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchhHHHH--HHHHHHHhhccCCCCchhHHHHHHHHhcc--CceeccccchHHHHHHH
Confidence 345666668888888777654433332221 12333444433 23446666777775555 11111 23667788888
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHH
Q 021242 95 HVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVI 174 (315)
Q Consensus 95 ~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~ 174 (315)
++... .+.++...-..+|+.....+.......++ -+.|.++.++.+..+||.+...+--++..|++..++...+
T Consensus 537 qlas~----~s~evl~llmE~Ls~vv~~dpef~as~~s-kI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m- 610 (1005)
T KOG2274|consen 537 QLASK----SSDEVLVLLMEALSSVVKLDPEFAASMES-KICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPM- 610 (1005)
T ss_pred HHccc----ccHHHHHHHHHHHHHHhccChhhhhhhhc-chhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcch-
Confidence 88875 45677777788888877655444433442 5577777777655678888888888888888744444443
Q ss_pred hhCCcHHHHHHHhcCC---CcchHHHHHHHHHHHhcC-h-hhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHH
Q 021242 175 ALGGVQPLFSLVVNGG---RAGIVEDASAVIAQIAGC-E-ESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNL 249 (315)
Q Consensus 175 ~~g~v~~L~~lL~~~~---~~~~~~~a~~~L~~L~~~-~-~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l 249 (315)
..-.+|.++..|.... ..+.+..++.+|..+-+. + .--+.+. .-+.|.+.+..-+. ++.....++-.+|..+
T Consensus 611 ~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~-~~~FpaVak~tlHs--dD~~tlQ~~~EcLra~ 687 (1005)
T KOG2274|consen 611 QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI-CYAFPAVAKITLHS--DDHETLQNATECLRAL 687 (1005)
T ss_pred HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH-HHHhHHhHhheeec--CChHHHHhHHHHHHHH
Confidence 3567999999996422 245677778888755442 2 2223332 23568888866543 2566666878888877
Q ss_pred hcc
Q 021242 250 VNF 252 (315)
Q Consensus 250 ~~~ 252 (315)
-..
T Consensus 688 Is~ 690 (1005)
T KOG2274|consen 688 ISV 690 (1005)
T ss_pred Hhc
Confidence 643
|
|
| >PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | Back alignment and domain information |
|---|
Probab=93.39 E-value=10 Score=38.67 Aligned_cols=251 Identities=13% Similarity=0.080 Sum_probs=144.0
Q ss_pred HHHhCCCHHHHHHHHcCC-----CHHHHHHHHHHHHhcCcccc-hhhhhhcCchHHHHHHHh----cCCCCCCHHHHHHH
Q 021242 43 MISEAGSIPYLAEILYSS-----SHAFQENAAATLLNLSITSR-DSLMSTRGLLDAISHVLR----HHSTSTSSAAVQSS 112 (315)
Q Consensus 43 ~i~~~g~i~~Lv~lL~~~-----~~~~~~~a~~~L~~la~~~~-~~~i~~~~~i~~L~~lL~----~~~~~~~~~~~~~a 112 (315)
.+.+.|++..|++++.+. ........+.+|..++.-.. ++.+.+.++++.|+..+. .+.....+++.+..
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L 191 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL 191 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence 456789999999999752 34566667777777776654 455567999999998885 21101124555555
Q ss_pred HHHHHHhhcCCC---ch---h---hhh---hccccHHHHHHHhhcc--CCChHHHHHHHHHHHHhccCCCcHHHHHhhCC
Q 021242 113 AATLHSLLVVDS---YR---P---IIG---AKRDIIHSLIEIIKTR--NSPLRSVKDALKALFGIALYPLNRYQVIALGG 178 (315)
Q Consensus 113 ~~~L~~Ls~~~~---~~---~---~i~---~~~g~i~~Lv~ll~~~--~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~ 178 (315)
..++..|..... .. . ..+ +....+..|++.+.++ ..++.+....++.|-+|+...+.+...+-.-
T Consensus 192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~- 270 (802)
T PF13764_consen 192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH- 270 (802)
T ss_pred HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH-
Confidence 555555542111 11 1 110 0112366777766643 2357788889999999998776665443111
Q ss_pred cHHHHHHHhcCCC-cchHHHHHHHHHHHh----cC---hhhHHHHHhcCCHHHHHHHhhcCCC-----CChh--------
Q 021242 179 VQPLFSLVVNGGR-AGIVEDASAVIAQIA----GC---EESVDEFKKCCGIGVLVDLLDLGTG-----SGHR-------- 237 (315)
Q Consensus 179 v~~L~~lL~~~~~-~~~~~~a~~~L~~L~----~~---~~~~~~i~~~~~i~~Lv~ll~~~~~-----~~~~-------- 237 (315)
..+.+++=.-+.. .+--...+..++.++ .+ ..-|+.+++.|.+...+++|....+ .+++
T Consensus 271 F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~p 350 (802)
T PF13764_consen 271 FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRP 350 (802)
T ss_pred HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCC
Confidence 1222222110100 000011233333333 22 2457788888888888888865422 1222
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhC-CHHHHHHHHHHHHHHhhCC
Q 021242 238 VKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNG-SAKGKTKAVALLKILVDDG 298 (315)
Q Consensus 238 ~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~-~~~~k~~A~~~L~~l~~~~ 298 (315)
.-..++.+|.-+|.... ..+.++. .++++.+-.|=+.. +..+=.-|-.+|..+.+..
T Consensus 351 sLp~iL~lL~GLa~gh~--~tQ~~~~--~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~ 408 (802)
T PF13764_consen 351 SLPYILRLLRGLARGHE--PTQLLIA--EQLLPLLHRLEQVSSEEHIGSLAENLLEALAENE 408 (802)
T ss_pred cHHHHHHHHHHHHhcCH--HHHHHHH--hhHHHHHHHhhcCCCccchHHHHHHHHHHHhcCh
Confidence 23458899999987532 3355565 67886666665543 5677777888888887643
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.23 E-value=1.8 Score=45.07 Aligned_cols=231 Identities=15% Similarity=0.117 Sum_probs=128.2
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhcc---CchhhHHHHhCCCHHHHHHHHcCCCH-HHHHHHHHHHHhcCcc---
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKH---DAEIRPMISEAGSIPYLAEILYSSSH-AFQENAAATLLNLSIT--- 78 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~---~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~~L~~la~~--- 78 (315)
+-+|..|.++..+.+++|..|+.+|..+... -+..-..+.-.-..|.|-.|+.+.+. .++.+=+..|..||..
T Consensus 462 RVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~r 541 (1431)
T KOG1240|consen 462 RVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYR 541 (1431)
T ss_pred hhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHH
Confidence 3467889999999999999999999987532 22233344555668888888876332 2332222222222111
Q ss_pred ---------------cc-hh-hh-h--h------cCchHHH-HHHHhcCCCCCCHHHHHHHHHHHHHhhc-CCCchhhhh
Q 021242 79 ---------------SR-DS-LM-S--T------RGLLDAI-SHVLRHHSTSTSSAAVQSSAATLHSLLV-VDSYRPIIG 130 (315)
Q Consensus 79 ---------------~~-~~-~i-~--~------~~~i~~L-~~lL~~~~~~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~ 130 (315)
+. ++ .. . + ...++.+ ..+|.+ +.+-++..-...|..|+. +...+
T Consensus 542 Fle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd----~~~~Vkr~Lle~i~~LC~FFGk~k---- 613 (1431)
T KOG1240|consen 542 FLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSD----SPPIVKRALLESIIPLCVFFGKEK---- 613 (1431)
T ss_pred HHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcC----CchHHHHHHHHHHHHHHHHhhhcc----
Confidence 10 10 00 0 0 0123333 233333 233444444444555442 22111
Q ss_pred hccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChh
Q 021242 131 AKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEE 210 (315)
Q Consensus 131 ~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~ 210 (315)
...-+++-|+..|. +.|...+-.-...+..+|..-.. +-++.+.+|.|.+-|. ++++-+...|++.|+-|+...-
T Consensus 614 sND~iLshLiTfLN--DkDw~LR~aFfdsI~gvsi~VG~--rs~seyllPLl~Q~lt-D~EE~Viv~aL~~ls~Lik~~l 688 (1431)
T KOG1240|consen 614 SNDVILSHLITFLN--DKDWRLRGAFFDSIVGVSIFVGW--RSVSEYLLPLLQQGLT-DGEEAVIVSALGSLSILIKLGL 688 (1431)
T ss_pred cccchHHHHHHHhc--CccHHHHHHHHhhccceEEEEee--eeHHHHHHHHHHHhcc-CcchhhHHHHHHHHHHHHHhcc
Confidence 11123566666666 33555555555555555542111 1235567888888884 6777889999999999987654
Q ss_pred hHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccC
Q 021242 211 SVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFG 253 (315)
Q Consensus 211 ~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~ 253 (315)
-++..+- ..+.-...+|-+. +.+++..++.++..+..+-
T Consensus 689 l~K~~v~-~i~~~v~PlL~hP---N~WIR~~~~~iI~~~~~~l 727 (1431)
T KOG1240|consen 689 LRKPAVK-DILQDVLPLLCHP---NLWIRRAVLGIIAAIARQL 727 (1431)
T ss_pred cchHHHH-HHHHhhhhheeCc---hHHHHHHHHHHHHHHHhhh
Confidence 4443321 2233444456554 7899999999999987643
|
|
| >KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown] | Back alignment and domain information |
|---|
Probab=93.16 E-value=7.9 Score=36.67 Aligned_cols=130 Identities=12% Similarity=0.171 Sum_probs=92.0
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCC----chhhhhhccccHHHHHHHhhccCC-----ChHHHHHHHHHHHHh
Q 021242 93 ISHVLRHHSTSTSSAAVQSSAATLHSLLVVDS----YRPIIGAKRDIIHSLIEIIKTRNS-----PLRSVKDALKALFGI 163 (315)
Q Consensus 93 L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~----~~~~i~~~~g~i~~Lv~ll~~~~~-----~~~~~~~a~~aL~~L 163 (315)
+..+++. .+++-+..+...+..+.-.++ +|..+.+.-| ++.+=+++.+.++ +.-.+..++..|.-.
T Consensus 16 ~~~L~~~----k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVG-f~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacF 90 (698)
T KOG2611|consen 16 CLKLLKG----KRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVG-FHFLDRLLRTKSGPGDCPDDVYLQISITVLACF 90 (698)
T ss_pred HHHHhcc----cChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhc-cchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHH
Confidence 4555553 344556666666667765443 4666666568 6888888875321 123345688889999
Q ss_pred ccCCCcH--HHHHhhCCcHHHHHHHhcCCCc------chHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhh
Q 021242 164 ALYPLNR--YQVIALGGVQPLFSLVVNGGRA------GIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLD 229 (315)
Q Consensus 164 s~~~~~~--~~i~~~g~v~~L~~lL~~~~~~------~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~ 229 (315)
|+.|+.. ..|+ ..||.+++++....+. .+.+.+...|...++.+.|-..++..|+++.+-++-.
T Consensus 91 C~~pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~ 162 (698)
T KOG2611|consen 91 CRVPELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYE 162 (698)
T ss_pred hCChhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHh
Confidence 9988754 4665 6799999999643333 3678899999999999999999999999999987654
|
|
| >COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.48 Score=40.08 Aligned_cols=147 Identities=15% Similarity=0.163 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHH---cCC--CHHHHHHHHHHHHhcCcccch---hhhhhcCchHH
Q 021242 21 QTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEIL---YSS--SHAFQENAAATLLNLSITSRD---SLMSTRGLLDA 92 (315)
Q Consensus 21 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL---~~~--~~~~~~~a~~~L~~la~~~~~---~~i~~~~~i~~ 92 (315)
.-...|+..|.-++.+ |+.|..+.++.+=--+-++| +++ .+-++..++.++..+..++.. +.....+.+|.
T Consensus 115 nRvcnaL~lLQclaSh-Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPL 193 (315)
T COG5209 115 NRVCNALNLLQCLASH-PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPL 193 (315)
T ss_pred hHHHHHHHHHHHHhcC-cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHH
Confidence 4456778888888865 89999999887533334444 332 234778899999999888753 33457889999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhc-------cccHHHHHHHhhccCCChHHHHHHHHHHHHhcc
Q 021242 93 ISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAK-------RDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL 165 (315)
Q Consensus 93 L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~-------~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~ 165 (315)
+++++.. +++-.+..++.++..+-.++.+-.-+.+. ..++..++.-+-+ .++....+.++++-..||.
T Consensus 194 cLrIme~----gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs-~~~~RLlKh~iRcYlRLsd 268 (315)
T COG5209 194 CLRIMEL----GSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVS-LGSTRLLKHAIRCYLRLSD 268 (315)
T ss_pred HHHHHHh----hhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccchhHHHHHHHHheeecC
Confidence 9999997 56666777777777777777653333221 1223344443332 4667788889999889888
Q ss_pred CCCcHHHH
Q 021242 166 YPLNRYQV 173 (315)
Q Consensus 166 ~~~~~~~i 173 (315)
+|+.|..+
T Consensus 269 ~p~aR~lL 276 (315)
T COG5209 269 KPHARALL 276 (315)
T ss_pred CHhHHHHH
Confidence 88777654
|
|
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.05 E-value=8.7 Score=38.38 Aligned_cols=129 Identities=16% Similarity=0.155 Sum_probs=66.2
Q ss_pred CHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHHh
Q 021242 19 SEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLR 98 (315)
Q Consensus 19 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~ 98 (315)
++..|..-++.|+..+..++. .+...|..+..+|.+.++.+...|+..|..++.++.--.. +...+++++.
T Consensus 219 ~~~LqlViVE~Irkv~~~~p~-----~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~----Aa~~~i~l~~ 289 (948)
T KOG1058|consen 219 NDSLQLVIVELIRKVCLANPA-----EKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKA----AASTYIDLLV 289 (948)
T ss_pred cHHHHHHHHHHHHHHHhcCHH-----HhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHH----HHHHHHHHHH
Confidence 446666666666666655444 2234466777777777777776666666666544331111 2333444443
Q ss_pred cCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccC
Q 021242 99 HHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALY 166 (315)
Q Consensus 99 ~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~ 166 (315)
.. ++..++.....-|..+. ..++..+ + |++--.+.+|.+ .+.+++..++.....|+.+
T Consensus 290 ke---sdnnvklIvldrl~~l~--~~~~~il-~--~l~mDvLrvLss--~dldvr~Ktldi~ldLvss 347 (948)
T KOG1058|consen 290 KE---SDNNVKLIVLDRLSELK--ALHEKIL-Q--GLIMDVLRVLSS--PDLDVRSKTLDIALDLVSS 347 (948)
T ss_pred hc---cCcchhhhhHHHHHHHh--hhhHHHH-H--HHHHHHHHHcCc--ccccHHHHHHHHHHhhhhh
Confidence 21 11122222222222222 1222222 2 446666677773 4777877777777776654
|
|
| >KOG1788 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.99 E-value=6.3 Score=40.99 Aligned_cols=262 Identities=16% Similarity=0.165 Sum_probs=143.4
Q ss_pred HHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHHhcCCCC--
Q 021242 26 ALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTS-- 103 (315)
Q Consensus 26 a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~~~~~~-- 103 (315)
+-..|..+.+.+.+|.+.+.++.++..+++++-+. +-+---++++..|-..+.+++ .+..+-.++..|+++-..
T Consensus 662 gwDcLisllKnnteNqklFreanGvklilpflind--ehRSslLrivscLitvdpkqv--hhqelmalVdtLksgmvt~I 737 (2799)
T KOG1788|consen 662 GWDCLISLLKNNTENQKLFREANGVKLILPFLIND--EHRSSLLRIVSCLITVDPKQV--HHQELMALVDTLKSGMVTRI 737 (2799)
T ss_pred hHHHHHHHHhccchhhHHHHhhcCceEEEEeeech--HHHHHHHHHHHHHhccCcccc--cHHHHHHHHHHHHhcceecc
Confidence 35667788888899999999988888888888432 223333344433333222211 233466777888762110
Q ss_pred -C-----CHHHHHHHHHHHHHhhc-CCCchhhhhhccccHHHHHHHhhcc--------CCChHHHHHHHHHHH-----Hh
Q 021242 104 -T-----SSAAVQSSAATLHSLLV-VDSYRPIIGAKRDIIHSLIEIIKTR--------NSPLRSVKDALKALF-----GI 163 (315)
Q Consensus 104 -~-----~~~~~~~a~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~ll~~~--------~~~~~~~~~a~~aL~-----~L 163 (315)
+ ..+......+++|...+ +...+..+++.+| +..|...|... .+|..+-..-...|. .+
T Consensus 738 sgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatG-FslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlav 816 (2799)
T KOG1788|consen 738 SGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATG-FSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAV 816 (2799)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHccCchheeehhcccc-HHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHH
Confidence 0 12344567788888875 5567888999888 56666555321 112111111222222 22
Q ss_pred ccCCCcHHHHHhhCCcHHHHHHHhcCC----------------------Ccc--hHHH-HHHHHHHHh----------c-
Q 021242 164 ALYPLNRYQVIALGGVQPLFSLVVNGG----------------------RAG--IVED-ASAVIAQIA----------G- 207 (315)
Q Consensus 164 s~~~~~~~~i~~~g~v~~L~~lL~~~~----------------------~~~--~~~~-a~~~L~~L~----------~- 207 (315)
|.++.|+.++-..=....+..+|+..+ -++ ..|. ||..+-.+- .
T Consensus 817 cenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGq 896 (2799)
T KOG1788|consen 817 CENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQ 896 (2799)
T ss_pred hhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCC
Confidence 445566554321111112222221100 000 0111 222222211 1
Q ss_pred ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHh---hCCHHHH
Q 021242 208 CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQ---NGSAKGK 284 (315)
Q Consensus 208 ~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~---~~~~~~k 284 (315)
....++.|..+|++..++..+-.. +++.+-.-...+..+++.+. .. ++... ..|.+..|+.+.. +++.-.-
T Consensus 897 fnpdk~~iynagavRvlirslLln---ypK~qlefl~lleSlaRasp-fn-aellt-S~gcvellleIiypflsgsspfL 970 (2799)
T KOG1788|consen 897 FNPDKQKIYNAGAVRVLIRSLLLN---YPKLQLEFLNLLESLARASP-FN-AELLT-SAGCVELLLEIIYPFLSGSSPFL 970 (2799)
T ss_pred cCchHhhhcccchhHHHHHHHHhh---ChHHHHHHHHHHHHHhhcCC-Cc-hhhhh-cccHHHHHHHHhhhhhcCCchHh
Confidence 123466788888899999966643 78888888888888887554 33 34443 3788888887654 4555566
Q ss_pred HHHHHHHHHHhhCC
Q 021242 285 TKAVALLKILVDDG 298 (315)
Q Consensus 285 ~~A~~~L~~l~~~~ 298 (315)
-.|.+|...|-.++
T Consensus 971 shalkIvemLgayr 984 (2799)
T KOG1788|consen 971 SHALKIVEMLGAYR 984 (2799)
T ss_pred hccHHHHHHHhhcc
Confidence 66777766665543
|
|
| >COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.46 Score=40.20 Aligned_cols=98 Identities=11% Similarity=0.090 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhcChhhHHHHHhcCC---HHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHH
Q 021242 196 EDASAVIAQIAGCEESVDEFKKCCG---IGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGI 272 (315)
Q Consensus 196 ~~a~~~L~~L~~~~~~~~~i~~~~~---i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L 272 (315)
-.++.+|..+++.|+.+..|.++.. +-..+...... +..+..+--+.+++..+.+.+++.+...+.. ..++|.+
T Consensus 118 cnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~-~~fEyLRltsLGVIgaLvkNdsq~vi~fLlt--TeivPLc 194 (315)
T COG5209 118 CNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSN-SKFEYLRLTSLGVIGALVKNDSQYVIKFLLT--TEIVPLC 194 (315)
T ss_pred HHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccC-CccceeeehHHHHHHHHHhCCCHHHHHHHHh--hhHHHHH
Confidence 3588888999999999999998774 33333333321 2356678889999999999877666666666 7899999
Q ss_pred HHHHhhCCHHHHHHHHHHHHHHhh
Q 021242 273 ADVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 273 ~~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
+.+.+.+++.-|.-|..+++.+-.
T Consensus 195 LrIme~gSElSktvaifI~qkil~ 218 (315)
T COG5209 195 LRIMELGSELSKTVAIFIFQKILG 218 (315)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhc
Confidence 999999999999999998887643
|
|
| >PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.38 Score=41.12 Aligned_cols=86 Identities=19% Similarity=0.146 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHHhcChhhHHHHHhcCC-------HHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHcc
Q 021242 194 IVEDASAVIAQIAGCEESVDEFKKCCG-------IGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAM 266 (315)
Q Consensus 194 ~~~~a~~~L~~L~~~~~~~~~i~~~~~-------i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~ 266 (315)
-+..|+.+|+.|+..+.|..-+...+- +..|++++... .+...+|.|+.+|.++|..+. ..+..+.. +.
T Consensus 140 PqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~--e~~v~REfAvvlL~~La~~~~-~~~r~iA~-q~ 215 (257)
T PF12031_consen 140 PQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMR--EDQVCREFAVVLLSNLAQGDE-AAARAIAM-QK 215 (257)
T ss_pred HHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccc--cchhHHHHHHHHHHHHhcccH-HHHHHHHH-hh
Confidence 367899999999998888888877663 34445555443 478899999999999997543 34444443 48
Q ss_pred CcHHHHHHHHhhCCHHH
Q 021242 267 QVADGIADVAQNGSAKG 283 (315)
Q Consensus 267 g~~~~L~~ll~~~~~~~ 283 (315)
+.+..|+.+++..+...
T Consensus 216 ~~i~~Li~FiE~a~~~~ 232 (257)
T PF12031_consen 216 PCISHLIAFIEDAEQNA 232 (257)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 99999999999864433
|
This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM. |
| >PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing | Back alignment and domain information |
|---|
Probab=92.76 E-value=5.6 Score=36.93 Aligned_cols=193 Identities=11% Similarity=0.118 Sum_probs=112.3
Q ss_pred HHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHH--HHhcCCC
Q 021242 25 EALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISH--VLRHHST 102 (315)
Q Consensus 25 ~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~--lL~~~~~ 102 (315)
.|+..|-.+....+..-..+.+.|++..+++.++.+....++. -.+-..+... ..+.....+. .+..
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~----~~~~~~~~~~----~~~~~~~~~~~~~i~~--- 71 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE----NKNEEAGSGI----PPEYKESSVDGYSISY--- 71 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc----ccccCCCCCC----CCCcccccccccccCH---
Confidence 4677777777666667788899999999999997543222221 0011111000 0000000000 0000
Q ss_pred CCCHHHHHHHHHHHHHhhc-CCCc----hhhhhhccccHHHHHHHhhccC-CChHHHHHHHHHHHHhccCCCcHH-HHHh
Q 021242 103 STSSAAVQSSAATLHSLLV-VDSY----RPIIGAKRDIIHSLIEIIKTRN-SPLRSVKDALKALFGIALYPLNRY-QVIA 175 (315)
Q Consensus 103 ~~~~~~~~~a~~~L~~Ls~-~~~~----~~~i~~~~g~i~~Lv~ll~~~~-~~~~~~~~a~~aL~~Ls~~~~~~~-~i~~ 175 (315)
......+....++..+.. .... |..+- ++.+...|..+++.+. -.+.+...|+..+..+-.++.... .+.+
T Consensus 72 -~r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D-~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e 149 (379)
T PF06025_consen 72 -QRQQLLKSLLKFLSHAMQHSGGFGDRLRNLID-SSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQE 149 (379)
T ss_pred -HHHHHHHHHHHHHHHHhccCCCcccccccccc-hhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHH
Confidence 001122223333333333 2222 33332 2465667777887421 135677788888888877655554 5567
Q ss_pred hCCcHHHHHHHh-cC--CCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhc
Q 021242 176 LGGVQPLFSLVV-NG--GRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDL 230 (315)
Q Consensus 176 ~g~v~~L~~lL~-~~--~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~ 230 (315)
+|.++.+++.+. .. ++.++....-.++.-||-+..|.+.+.+.+.++.+++++.+
T Consensus 150 ~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s 207 (379)
T PF06025_consen 150 AGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTS 207 (379)
T ss_pred cCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCC
Confidence 899999999996 32 23344444556777888999999999998889999998874
|
This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO. |
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.75 E-value=5.2 Score=39.87 Aligned_cols=58 Identities=19% Similarity=0.174 Sum_probs=34.8
Q ss_pred HHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCc
Q 021242 13 TKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSI 77 (315)
Q Consensus 13 ~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~ 77 (315)
..|+++++-+|-..++.|+.+- .++ .=...+|.+...|.+.+.=+|++|.-+++.+-.
T Consensus 106 kDLQHPNEyiRG~TLRFLckLk--E~E-----Llepl~p~IracleHrhsYVRrNAilaifsIyk 163 (948)
T KOG1058|consen 106 KDLQHPNEYIRGSTLRFLCKLK--EPE-----LLEPLMPSIRACLEHRHSYVRRNAILAIFSIYK 163 (948)
T ss_pred hhccCchHhhcchhhhhhhhcC--cHH-----HhhhhHHHHHHHHhCcchhhhhhhheeehhHHh
Confidence 4567777666666555555552 122 113456777777777766677777766655543
|
|
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.71 E-value=1.5 Score=45.56 Aligned_cols=144 Identities=15% Similarity=0.066 Sum_probs=104.3
Q ss_pred cHHHHHHHhhcc--CCChHHHHHHHHHHHHhcc-CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcC-hh
Q 021242 135 IIHSLIEIIKTR--NSPLRSVKDALKALFGIAL-YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGC-EE 210 (315)
Q Consensus 135 ~i~~Lv~ll~~~--~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~-~~ 210 (315)
+.|.++.+.+.+ .++|.++..|.-+|+.+.. +.+-+ ...+|.|+..+..+|++.++-++.-.++.|+.. |.
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fc-----es~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFC-----ESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 456666666532 3468888888888887764 32222 345788999997667788888888888888764 32
Q ss_pred hHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHH
Q 021242 211 SVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVAL 290 (315)
Q Consensus 211 ~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~ 290 (315)
..+. .-+.|...|.+. +..+|+.|+.+|.+|-.. .|++ --|.++....++.+++++++..|...
T Consensus 995 lie~-----~T~~Ly~rL~D~---~~~vRkta~lvlshLILn-------dmiK-VKGql~eMA~cl~D~~~~IsdlAk~F 1058 (1251)
T KOG0414|consen 995 LIEP-----WTEHLYRRLRDE---SPSVRKTALLVLSHLILN-------DMIK-VKGQLSEMALCLEDPNAEISDLAKSF 1058 (1251)
T ss_pred ccch-----hhHHHHHHhcCc---cHHHHHHHHHHHHHHHHh-------hhhH-hcccHHHHHHHhcCCcHHHHHHHHHH
Confidence 2221 236677777764 899999999999998642 3555 27999999999999999999999987
Q ss_pred HHHHhhCCC
Q 021242 291 LKILVDDGN 299 (315)
Q Consensus 291 L~~l~~~~~ 299 (315)
.+.|+.-+|
T Consensus 1059 F~Els~k~n 1067 (1251)
T KOG0414|consen 1059 FKELSSKGN 1067 (1251)
T ss_pred HHHhhhccc
Confidence 777766543
|
|
| >PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division [] | Back alignment and domain information |
|---|
Probab=92.63 E-value=1.3 Score=36.33 Aligned_cols=109 Identities=17% Similarity=0.166 Sum_probs=74.9
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCch-hhHHHHhCCCHHHHHHHHcC---------CCHHHHHHHHHHHHhc
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAE-IRPMISEAGSIPYLAEILYS---------SSHAFQENAAATLLNL 75 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~-~~~~i~~~g~i~~Lv~lL~~---------~~~~~~~~a~~~L~~l 75 (315)
......+..|.+..... ..+..|.......+. --+.+.+.||+..|++.|.. .+...+..++.+|..+
T Consensus 66 ~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal 143 (187)
T PF06371_consen 66 SSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL 143 (187)
T ss_dssp HHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 35566788887765332 555555544444333 35678889999999999953 3456788899999888
Q ss_pred Ccccc--hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhh
Q 021242 76 SITSR--DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLL 120 (315)
Q Consensus 76 a~~~~--~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls 120 (315)
..+.. ..++..++++..|+..|.+ .+..++..+..+|..++
T Consensus 144 ~n~~~G~~~v~~~~~~v~~i~~~L~s----~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 144 MNTKYGLEAVLSHPDSVNLIALSLDS----PNIKTRKLALEILAALC 186 (187)
T ss_dssp TSSHHHHHHHHCSSSHHHHHHHT--T----TSHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHcCcHHHHHHHHHHCC----CCHHHHHHHHHHHHHHH
Confidence 77653 4456688999999999987 68899998988887764
|
Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A. |
| >PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle | Back alignment and domain information |
|---|
Probab=92.33 E-value=0.36 Score=38.87 Aligned_cols=147 Identities=19% Similarity=0.165 Sum_probs=85.9
Q ss_pred hHHHHHHHhCC--CCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCccc---ch
Q 021242 7 TVRSLVTKLGS--VSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITS---RD 81 (315)
Q Consensus 7 ~i~~Lv~~L~~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~---~~ 81 (315)
.+..++..|.. .++++|..++..+..+- +..++...+ -.-+-+-.++...+.+....++.++..+--.. ..
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~ 79 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGS 79 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHH
Confidence 34456666654 45689999999999884 233333322 11112222223222234445555554444333 36
Q ss_pred hhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChH-HHHHHHHHH
Q 021242 82 SLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLR-SVKDALKAL 160 (315)
Q Consensus 82 ~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~-~~~~a~~aL 160 (315)
.++...|..+.++.+.... ..+......++.+|..=+.....|..+.+ .| ++.|-++.+. ..+.. ++..|+-.|
T Consensus 80 ~l~~~eg~~~~l~~~~~~~--~~~~~~~~~~lell~aAc~d~~~r~~I~~-~~-~~~L~~~~~~-~~~~~~ir~~A~v~L 154 (157)
T PF11701_consen 80 ELFLSEGFLESLLPLASRK--SKDRKVQKAALELLSAACIDKSCRTFISK-NY-VSWLKELYKN-SKDDSEIRVLAAVGL 154 (157)
T ss_dssp HHCCTTTHHHHHHHHHH-C--TS-HHHHHHHHHHHHHHTTSHHHHHCCHH-HC-HHHHHHHTTT-CC-HH-CHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHhcc--cCCHHHHHHHHHHHHHHHccHHHHHHHHH-HH-HHHHHHHHcc-ccchHHHHHHHHHHH
Confidence 7777899999999999821 15666677777777665555566666665 57 8999999963 23344 566666655
Q ss_pred HH
Q 021242 161 FG 162 (315)
Q Consensus 161 ~~ 162 (315)
..
T Consensus 155 ~K 156 (157)
T PF11701_consen 155 CK 156 (157)
T ss_dssp HH
T ss_pred hc
Confidence 43
|
Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A. |
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.33 E-value=14 Score=38.29 Aligned_cols=228 Identities=14% Similarity=0.080 Sum_probs=129.9
Q ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCch
Q 021242 47 AGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYR 126 (315)
Q Consensus 47 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~ 126 (315)
.++|+.|+..|++.|..++--|++-+..++...+..+. ..++...++++.. .+++..-..++-+|..|+...--.
T Consensus 340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~La--d~vi~svid~~~p---~e~~~aWHgacLaLAELA~rGlLl 414 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELA--DQVIGSVIDLFNP---AEDDSAWHGACLALAELALRGLLL 414 (1133)
T ss_pred HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHH--HHHHHHHHHhcCc---CCchhHHHHHHHHHHHHHhcCCcc
Confidence 36788888888888888998999999888876654432 2367777775553 234555668888999988643322
Q ss_pred hhhhhccccHHHHHHHhhcc------CCChHHHHHHHHHHHHhccC--CCcHHHHHhhCCcHHHHHHHhcCCCcchHHHH
Q 021242 127 PIIGAKRDIIHSLIEIIKTR------NSPLRSVKDALKALFGIALY--PLNRYQVIALGGVQPLFSLVVNGGRAGIVEDA 198 (315)
Q Consensus 127 ~~i~~~~g~i~~Lv~ll~~~------~~~~~~~~~a~~aL~~Ls~~--~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a 198 (315)
.... ..++|.+++-+... .....++..|+=..|.+++. +..-+.+++.=+--.|...+- |++...+..|
T Consensus 415 ps~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlF-DrevncRRAA 491 (1133)
T KOG1943|consen 415 PSLL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALF-DREVNCRRAA 491 (1133)
T ss_pred hHHH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhc-CchhhHhHHH
Confidence 2111 24466666555321 12235677777777777763 222223332211122222222 3455666666
Q ss_pred HHHHHHHhcC----hhhH----------------------HHHHhcCC-HHHHHHHhhcCCC--CChhHHHHHHHHHHHH
Q 021242 199 SAVIAQIAGC----EESV----------------------DEFKKCCG-IGVLVDLLDLGTG--SGHRVKENAVSALLNL 249 (315)
Q Consensus 199 ~~~L~~L~~~----~~~~----------------------~~i~~~~~-i~~Lv~ll~~~~~--~~~~~~~~a~~~L~~l 249 (315)
.+++...-+. |+|. ..+.+-.+ ...++..+-...- =+..+++.+.++|.+|
T Consensus 492 sAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~L 571 (1133)
T KOG1943|consen 492 SAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKL 571 (1133)
T ss_pred HHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHH
Confidence 6666653221 1111 11222222 3444443322111 1568899999999998
Q ss_pred hccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHH
Q 021242 250 VNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVA 289 (315)
Q Consensus 250 ~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~ 289 (315)
+... .+-.. .+.+++|++...+.++..+.-+..
T Consensus 572 s~~~-----pk~~a--~~~L~~lld~~ls~~~~~r~g~~l 604 (1133)
T KOG1943|consen 572 SLTE-----PKYLA--DYVLPPLLDSTLSKDASMRHGVFL 604 (1133)
T ss_pred HHhh-----HHhhc--ccchhhhhhhhcCCChHHhhhhHH
Confidence 7532 23343 688999998888877766654443
|
|
| >PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division [] | Back alignment and domain information |
|---|
Probab=92.24 E-value=0.68 Score=38.11 Aligned_cols=108 Identities=16% Similarity=0.163 Sum_probs=72.9
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHhccC--CCcHHHHHhhCCcHHHHHHHhcC--------CCcchHHHHHHHHHHH
Q 021242 136 IHSLIEIIKTRNSPLRSVKDALKALFGIALY--PLNRYQVIALGGVQPLFSLVVNG--------GRAGIVEDASAVIAQI 205 (315)
Q Consensus 136 i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~--~~~~~~i~~~g~v~~L~~lL~~~--------~~~~~~~~a~~~L~~L 205 (315)
...+++.+.. ..... ..+..|.-.-++ .+....+++.||+..|+.+|... .+......++..|+.+
T Consensus 68 p~~~i~~L~~--~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal 143 (187)
T PF06371_consen 68 PEWYIKKLKS--RPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL 143 (187)
T ss_dssp HHHHHHHHTT--T--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc--cCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 5667777763 22221 333333322222 24566788899999999988531 1224556688999999
Q ss_pred hcChhhHHHHHhcC-CHHHHHHHhhcCCCCChhHHHHHHHHHHHHh
Q 021242 206 AGCEESVDEFKKCC-GIGVLVDLLDLGTGSGHRVKENAVSALLNLV 250 (315)
Q Consensus 206 ~~~~~~~~~i~~~~-~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~ 250 (315)
...+.|+..+.+.. ++..++..|.+. +..++..++.+|..+|
T Consensus 144 ~n~~~G~~~v~~~~~~v~~i~~~L~s~---~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 144 MNTKYGLEAVLSHPDSVNLIALSLDSP---NIKTRKLALEILAALC 186 (187)
T ss_dssp TSSHHHHHHHHCSSSHHHHHHHT--TT---SHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHcCcHHHHHHHHHHCCC---CHHHHHHHHHHHHHHH
Confidence 99999999998865 589999988765 8899999999999987
|
Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A. |
| >PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length | Back alignment and domain information |
|---|
Probab=92.18 E-value=4.1 Score=32.88 Aligned_cols=144 Identities=15% Similarity=0.102 Sum_probs=83.6
Q ss_pred ccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHH
Q 021242 134 DIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVD 213 (315)
Q Consensus 134 g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~ 213 (315)
.+++.|+++++.. .+..++.+++++|..|-.-+.-+.+....+.- .....+.+.......+ ..... ...-+
T Consensus 10 ~LL~~L~~iLk~e-~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~----~~~~~~~~~~~~~~~l-~~~~~---~~~~e 80 (160)
T PF11865_consen 10 ELLDILLNILKTE-QSQSIRREALRVLGILGALDPYKHKSIQKSLD----SKSSENSNDESTDISL-PMMGI---SPSSE 80 (160)
T ss_pred HHHHHHHHHHHhC-CCHHHHHHHHHHhhhccccCcHHHhcccccCC----ccccccccccchhhHH-hhccC---CCchH
Confidence 4577888888863 56899999999999987755555443322111 0000011111222111 11111 11234
Q ss_pred HHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHH
Q 021242 214 EFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLK 292 (315)
Q Consensus 214 ~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~ 292 (315)
++.-...+..|+++|++. .-..-...++.++..+.+..+..+...+-+ ++|.++..++++++..++.--.-|.
T Consensus 81 e~y~~vvi~~L~~iL~D~--sLs~~h~~vv~ai~~If~~l~~~cv~~L~~----viP~~l~~i~~~~~~~~e~~~~qL~ 153 (160)
T PF11865_consen 81 EYYPTVVINALMRILRDP--SLSSHHTAVVQAIMYIFKSLGLKCVPYLPQ----VIPIFLRVIRTCPDSLREFYFQQLA 153 (160)
T ss_pred HHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHhcCcCchhHHHH----HhHHHHHHHHhCCHHHHHHHHHHHH
Confidence 444444678899998864 233444467777777776544445555544 8999999999988877776544343
|
It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner []. |
| >PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle | Back alignment and domain information |
|---|
Probab=91.49 E-value=0.81 Score=36.80 Aligned_cols=100 Identities=13% Similarity=0.103 Sum_probs=71.6
Q ss_pred CCCCHHHHHHHHHHHHHHhccCchhhHHHH-hCCCHHHHHHHHc--CCCHHHHHHHHHHHHhcCcccchhhhhhcCchHH
Q 021242 16 GSVSEQTRAEALAELRLLSKHDAEIRPMIS-EAGSIPYLAEILY--SSSHAFQENAAATLLNLSITSRDSLMSTRGLLDA 92 (315)
Q Consensus 16 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~-~~g~i~~Lv~lL~--~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~ 92 (315)
..++.+....++.++..+--..++.-..+. ..|.++.++.+.. +.+..++..++.+|..-|.+...+-.+...+++.
T Consensus 53 ~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~ 132 (157)
T PF11701_consen 53 DEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSW 132 (157)
T ss_dssp CCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHH
T ss_pred ccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 444446777888888888755566655555 5899999999998 7888899999999977776665444346678999
Q ss_pred HHHHHhcCCCCCCHH-HHHHHHHHHHH
Q 021242 93 ISHVLRHHSTSTSSA-AVQSSAATLHS 118 (315)
Q Consensus 93 L~~lL~~~~~~~~~~-~~~~a~~~L~~ 118 (315)
|-..++. +.+.. ++..|+-.|..
T Consensus 133 L~~~~~~---~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 133 LKELYKN---SKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHHHTTT---CC-HH-CHHHHHHHHHH
T ss_pred HHHHHcc---ccchHHHHHHHHHHHhc
Confidence 9999975 14444 67777766654
|
Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A. |
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.44 E-value=5.9 Score=40.03 Aligned_cols=175 Identities=15% Similarity=0.141 Sum_probs=101.8
Q ss_pred CHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHH
Q 021242 105 SSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFS 184 (315)
Q Consensus 105 ~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~ 184 (315)
-+.++..+...|+++....+.+.++.. .+++......++ ++++-+-.+|.+.+..||. +.....+|-+.+
T Consensus 740 qvpik~~gL~~l~~l~e~r~~~~~~~~-ekvl~i~ld~Lk--dedsyvyLnaI~gv~~Lce-------vy~e~il~dL~e 809 (982)
T KOG4653|consen 740 QVPIKGYGLQMLRHLIEKRKKATLIQG-EKVLAIALDTLK--DEDSYVYLNAIRGVVSLCE-------VYPEDILPDLSE 809 (982)
T ss_pred cccchHHHHHHHHHHHHhcchhhhhhH-HHHHHHHHHHhc--ccCceeeHHHHHHHHHHHH-------hcchhhHHHHHH
Confidence 345677788888888876666666655 477888888888 5566677778876666663 234556676776
Q ss_pred HHhcCCCcc---hHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHH
Q 021242 185 LVVNGGRAG---IVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEE 260 (315)
Q Consensus 185 lL~~~~~~~---~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 260 (315)
.-.+..+.. .+-..=.++.++.. ..+-.....+ --+...++.++.. +...|..+++++.++|.-..-.....
T Consensus 810 ~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrep---d~~~RaSS~a~lg~Lcq~~a~~vsd~ 885 (982)
T KOG4653|consen 810 EYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREP---DHEFRASSLANLGQLCQLLAFQVSDF 885 (982)
T ss_pred HHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCc---hHHHHHhHHHHHHHHHHHHhhhhhHH
Confidence 443222111 11111122322221 1111111111 1134444444432 56778889999999987433222233
Q ss_pred HHHHccCcHHHHHHHHhh-CCHHHHHHHHHHHHHHhhC
Q 021242 261 VKEMAMQVADGIADVAQN-GSAKGKTKAVALLKILVDD 297 (315)
Q Consensus 261 i~~~~~g~~~~L~~ll~~-~~~~~k~~A~~~L~~l~~~ 297 (315)
+.+ ++..++.+.+. +++-+|+.|+.++..+-.+
T Consensus 886 ~~e----v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~ 919 (982)
T KOG4653|consen 886 FHE----VLQLILSLETTDGSVLVRRAAVHLLAELLNG 919 (982)
T ss_pred HHH----HHHHHHHHHccCCchhhHHHHHHHHHHHHhc
Confidence 433 66777777775 6899999999988877553
|
|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.05 E-value=8.4 Score=41.44 Aligned_cols=107 Identities=19% Similarity=0.111 Sum_probs=61.3
Q ss_pred CCcHHHHHHHhcCCCcchHHHHHHHHHHH-hcCh-hhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCC
Q 021242 177 GGVQPLFSLVVNGGRAGIVEDASAVIAQI-AGCE-ESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGG 254 (315)
Q Consensus 177 g~v~~L~~lL~~~~~~~~~~~a~~~L~~L-~~~~-~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~ 254 (315)
-.||.|.++=. ||+..++ .|+.-+++- -.++ ....+.. .....-|+.-+.+. ..++||.+|.+|..|-.. .
T Consensus 998 kLIPrLyRY~y-DP~~~Vq-~aM~sIW~~Li~D~k~~vd~y~-neIl~eLL~~lt~k---ewRVReasclAL~dLl~g-~ 1070 (1702)
T KOG0915|consen 998 KLIPRLYRYQY-DPDKKVQ-DAMTSIWNALITDSKKVVDEYL-NEILDELLVNLTSK---EWRVREASCLALADLLQG-R 1070 (1702)
T ss_pred HhhHHHhhhcc-CCcHHHH-HHHHHHHHHhccChHHHHHHHH-HHHHHHHHHhccch---hHHHHHHHHHHHHHHHcC-C
Confidence 34666666654 5666655 556666664 3332 2222222 12345566655544 789999999999999864 3
Q ss_pred HHHHHHHHHHccCcHHHHHH-HHh---hCCHHHHHHHHHHHHHHhh
Q 021242 255 ERAAEEVKEMAMQVADGIAD-VAQ---NGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 255 ~~~~~~i~~~~~g~~~~L~~-ll~---~~~~~~k~~A~~~L~~l~~ 296 (315)
+. .++.+ -+|.++. +.+ +=.+.||+.|.++.+-++.
T Consensus 1071 ~~--~~~~e----~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsK 1110 (1702)
T KOG0915|consen 1071 PF--DQVKE----KLPELWEAAFRVMDDIKESVREAADKAARALSK 1110 (1702)
T ss_pred Ch--HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 24433 4566663 333 3357788877776665543
|
|
| >PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing | Back alignment and domain information |
|---|
Probab=90.70 E-value=5.8 Score=36.84 Aligned_cols=80 Identities=13% Similarity=0.161 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHc-C---CCHHHHHHHHHHHHhcCcccc-hhhhhhcCchHHHH
Q 021242 20 EQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILY-S---SSHAFQENAAATLLNLSITSR-DSLMSTRGLLDAIS 94 (315)
Q Consensus 20 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~---~~~~~~~~a~~~L~~la~~~~-~~~i~~~~~i~~L~ 94 (315)
+.+-..|+..+..+..++|-.-..+.++|.++.+++.+. . .+.++...--.+|..+|.+.. -+.+.+.+.++.++
T Consensus 123 ~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f 202 (379)
T PF06025_consen 123 PSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLF 202 (379)
T ss_pred hHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHH
Confidence 578888999999999888888889999999999999998 4 356788888889999999975 56666889999999
Q ss_pred HHHhc
Q 021242 95 HVLRH 99 (315)
Q Consensus 95 ~lL~~ 99 (315)
+++.+
T Consensus 203 ~if~s 207 (379)
T PF06025_consen 203 EIFTS 207 (379)
T ss_pred HHhCC
Confidence 99975
|
This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO. |
| >KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
Probab=90.64 E-value=1.3 Score=44.86 Aligned_cols=148 Identities=13% Similarity=0.139 Sum_probs=98.9
Q ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhh--hcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc-CC
Q 021242 47 AGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMS--TRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV-VD 123 (315)
Q Consensus 47 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~--~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~-~~ 123 (315)
..++|.|++.........+..=+.+|.+.-.+-+++++. -+...|.|++-|.- ++++++..+..++..+.- .+
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~----~D~~v~vstl~~i~~~l~~~~ 941 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSM----PDVIVRVSTLRTIPMLLTESE 941 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCC----CccchhhhHhhhhhHHHHhcc
Confidence 356899999988666666666777776665555544432 34467777777774 677888788888877664 33
Q ss_pred CchhhhhhccccHHHHHHHhhccCCC-hHHHHHHHHHHHHhcc-CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHH
Q 021242 124 SYRPIIGAKRDIIHSLIEIIKTRNSP-LRSVKDALKALFGIAL-YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAV 201 (315)
Q Consensus 124 ~~~~~i~~~~g~i~~Lv~ll~~~~~~-~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~ 201 (315)
.-...-. +-++|.++.+=++++.+ ..++..|+..|..|.. .|.+.-.-.+..++..+.+.|. |+..-+++.|..+
T Consensus 942 tL~t~~~--~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~Ld-DkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 942 TLQTEHL--STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILD-DKKRLVRKEAVDT 1018 (1030)
T ss_pred ccchHHH--hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccC-cHHHHHHHHHHHH
Confidence 3222222 35688888876653222 5678889999999998 6666555556778888999984 5555566666554
|
|
| >KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] | Back alignment and domain information |
|---|
Probab=90.57 E-value=22 Score=36.35 Aligned_cols=180 Identities=11% Similarity=0.084 Sum_probs=111.4
Q ss_pred CCHHHHHHHHHHHHHHhccCchhhHHHH--hCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc-hhhhhhcCchHHHH
Q 021242 18 VSEQTRAEALAELRLLSKHDAEIRPMIS--EAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR-DSLMSTRGLLDAIS 94 (315)
Q Consensus 18 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~--~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~-~~~i~~~~~i~~L~ 94 (315)
..|-.+..|+.+++-+++.. .+. ..+++..|..+......++...-..+|...+.-+. .....++...|..+
T Consensus 503 ~~~~~ki~a~~~~~~~~~~~-----vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i 577 (1005)
T KOG2274|consen 503 VPPPVKISAVRAFCGYCKVK-----VLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTI 577 (1005)
T ss_pred CCCchhHHHHHHHHhccCce-----eccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHH
Confidence 34567777777777777332 112 25677778888776677777777778866655543 33333555677777
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccC--CChHHHHHHHHHHHHhccC-CCcHH
Q 021242 95 HVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRN--SPLRSVKDALKALFGIALY-PLNRY 171 (315)
Q Consensus 95 ~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~--~~~~~~~~a~~aL~~Ls~~-~~~~~ 171 (315)
.++..- .++|.+...+-.++..|+....+...+.+ -+||.|++++..+. ........|+..|.-+.++ |.--.
T Consensus 578 ~lF~k~--s~DP~V~~~~qd~f~el~q~~~~~g~m~e--~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~ 653 (1005)
T KOG2274|consen 578 NLFLKY--SEDPQVASLAQDLFEELLQIAANYGPMQE--RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLP 653 (1005)
T ss_pred HHHHHh--cCCchHHHHHHHHHHHHHHHHHhhcchHH--HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCcc
Confidence 666421 25777777777777777765555444443 45999999998531 1134445555555544442 22223
Q ss_pred HHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHh
Q 021242 172 QVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIA 206 (315)
Q Consensus 172 ~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~ 206 (315)
...-.-+.|++.++..+..+......+-.+|+.+-
T Consensus 654 ~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~I 688 (1005)
T KOG2274|consen 654 NLLICYAFPAVAKITLHSDDHETLQNATECLRALI 688 (1005)
T ss_pred HHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHH
Confidence 33345678888888875556666677777777663
|
|
| >PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits [] | Back alignment and domain information |
|---|
Probab=90.43 E-value=14 Score=33.68 Aligned_cols=155 Identities=16% Similarity=0.133 Sum_probs=107.3
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHhc-cCchhhHHHHh--CCCHHHHHHHHcCC-----C--------HHHHHHHHH
Q 021242 7 TVRSLVTKLGSVSEQTRAEALAELRLLSK-HDAEIRPMISE--AGSIPYLAEILYSS-----S--------HAFQENAAA 70 (315)
Q Consensus 7 ~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~-~~~~~~~~i~~--~g~i~~Lv~lL~~~-----~--------~~~~~~a~~ 70 (315)
+...+.+.|+++.+.....++..|..++. .+....+.+.. .=-.+.+-+++... . +++|.+.+.
T Consensus 57 ~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 57 HLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 46778888898888899999999999998 55455555554 34466777777321 1 278888888
Q ss_pred HHHhcCcccc----hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHH-hhcCCC----chhhhhhccccHHHHHH
Q 021242 71 TLLNLSITSR----DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHS-LLVVDS----YRPIIGAKRDIIHSLIE 141 (315)
Q Consensus 71 ~L~~la~~~~----~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~-Ls~~~~----~~~~i~~~~g~i~~Lv~ 141 (315)
.+..+-...+ +.++.+.+.+..+++-|.. +++++......+|.. +...+. .|..+-. ..++..|+.
T Consensus 137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~----D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn-~~~L~~l~~ 211 (330)
T PF11707_consen 137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRK----DPPETVILILETLKDKVLKDSSVSRSTKCKLFN-EWTLSQLAS 211 (330)
T ss_pred HHHHHHccCCHHHHHHHHHcCchHHHHHhcccC----CCHHHHHHHHHHHHHHhccCCCCChhhhhhhcC-HHHHHHHHH
Confidence 7766655432 3466677778888888886 677888888888884 443332 2444443 245888998
Q ss_pred HhhccCCCh----HHHHHHHHHHHHhccCCC
Q 021242 142 IIKTRNSPL----RSVKDALKALFGIALYPL 168 (315)
Q Consensus 142 ll~~~~~~~----~~~~~a~~aL~~Ls~~~~ 168 (315)
+... .++ .+...+-..|..+|.++.
T Consensus 212 Ly~~--~~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 212 LYSR--DGEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred Hhcc--cCCcccchHHHHHHHHHHHHhcCCC
Confidence 7763 344 677888899999997654
|
The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length. |
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=90.26 E-value=19 Score=35.07 Aligned_cols=265 Identities=14% Similarity=0.077 Sum_probs=143.8
Q ss_pred CCCHHHHHHHHHHHHHHhc-cCchhhHHHHh--CCC--------HHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhh
Q 021242 17 SVSEQTRAEALAELRLLSK-HDAEIRPMISE--AGS--------IPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMS 85 (315)
Q Consensus 17 ~~~~~~~~~a~~~L~~l~~-~~~~~~~~i~~--~g~--------i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~ 85 (315)
.++++.|+.|.-+|.+-.. .++.-++...+ .|. =...++-|++..|.+-..|+..+..++.-+ .
T Consensus 52 ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~E-----l 126 (858)
T COG5215 52 NSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARME-----L 126 (858)
T ss_pred CCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh-----C
Confidence 4567889888888886543 33332232222 221 122355566777777777777777665322 2
Q ss_pred hcCchHHHHHHHhcCC-CCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHH-h
Q 021242 86 TRGLLDAISHVLRHHS-TSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFG-I 163 (315)
Q Consensus 86 ~~~~i~~L~~lL~~~~-~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~-L 163 (315)
-.+..|-|+..+...- -.+....+..+..++.+.+.......++..++.++-.++.--.+...+..++..|+.+|++ +
T Consensus 127 p~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl 206 (858)
T COG5215 127 PNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSL 206 (858)
T ss_pred ccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHH
Confidence 3445555555553211 0134457788999999988655545666555554555554333212345677889999988 2
Q ss_pred ccC------CCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcC-hhhHHHHHhcCCHHHHHHHhhcCCCCCh
Q 021242 164 ALY------PLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGC-EESVDEFKKCCGIGVLVDLLDLGTGSGH 236 (315)
Q Consensus 164 s~~------~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~~i~~Lv~ll~~~~~~~~ 236 (315)
-.- +.+|..+ +....+.-+ .++.+++..+.+.|..+..- -..-+...+.--..-....+++. ++
T Consensus 207 ~fv~~nf~~E~erNy~-----mqvvceatq-~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~---nd 277 (858)
T COG5215 207 MFVQGNFCYEEERNYF-----MQVVCEATQ-GNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQ---ND 277 (858)
T ss_pred HHHHHhhcchhhhchh-----heeeehhcc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---ch
Confidence 211 1122221 112223332 35678888888888877542 22223333322223333355543 77
Q ss_pred hHHHHHHHHHHHHhccCCHHHHHHHHHH--------------ccCcHHHHHHHHhhC--C-----HHHHHHHHHHHHHHh
Q 021242 237 RVKENAVSALLNLVNFGGERAAEEVKEM--------------AMQVADGIADVAQNG--S-----AKGKTKAVALLKILV 295 (315)
Q Consensus 237 ~~~~~a~~~L~~l~~~~~~~~~~~i~~~--------------~~g~~~~L~~ll~~~--~-----~~~k~~A~~~L~~l~ 295 (315)
++.-.++..-.-+|...-+ ..-+.-.. -.+++|.|+.++... + =.....|...|+.+.
T Consensus 278 ~va~qavEfWsticeEeid-~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfa 356 (858)
T COG5215 278 EVAIQAVEFWSTICEEEID-GEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFA 356 (858)
T ss_pred HHHHHHHHHHHHHHHHHhh-hHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHH
Confidence 8887887765567653321 11111110 034789999998861 2 245566666777765
Q ss_pred h
Q 021242 296 D 296 (315)
Q Consensus 296 ~ 296 (315)
.
T Consensus 357 q 357 (858)
T COG5215 357 Q 357 (858)
T ss_pred H
Confidence 4
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.00 E-value=4.3 Score=39.59 Aligned_cols=181 Identities=17% Similarity=0.125 Sum_probs=97.1
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHh-CCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhh
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISE-AGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSL 83 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~ 83 (315)
.+-+|.|...|++..+.++...+..+..++..++++ .-..+ ..+==-|+++|++.+.+++++|...+.-++. .
T Consensus 687 ~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~pey-i~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~-----a 760 (975)
T COG5181 687 SGILPSLTPILRNKHQKVVANTIALVGTICMNSPEY-IGVREWMRICFELVDSLKSWNKEIRRNATETFGCISR-----A 760 (975)
T ss_pred hhccccccHhhhhhhHHHhhhHHHHHHHHHhcCccc-CCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh-----h
Confidence 345678888888888888888888888888777652 11222 2333458899999999999999998876652 2
Q ss_pred hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHh
Q 021242 84 MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGI 163 (315)
Q Consensus 84 i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~L 163 (315)
+.-.+.+..|+.=|+. + +-+...+.++ .++...+.+-.+ .++|.|..=-. +....++...+++++.+
T Consensus 761 iGPqdvL~~LlnnLkv----q--eRq~Rvctsv-aI~iVae~cgpf----sVlP~lm~dY~--TPe~nVQnGvLkam~fm 827 (975)
T COG5181 761 IGPQDVLDILLNNLKV----Q--ERQQRVCTSV-AISIVAEYCGPF----SVLPTLMSDYE--TPEANVQNGVLKAMCFM 827 (975)
T ss_pred cCHHHHHHHHHhcchH----H--HHHhhhhhhh-hhhhhHhhcCch----hhHHHHHhccc--CchhHHHHhHHHHHHHH
Confidence 2122233333333332 1 2222222222 122222222211 12444444333 22445666677776655
Q ss_pred ccCC--CcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc
Q 021242 164 ALYP--LNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG 207 (315)
Q Consensus 164 s~~~--~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~ 207 (315)
-..- ..+..+ .-..|.|-+.|. +.++.-+..|+.++..|+-
T Consensus 828 Feyig~~s~dYv--y~itPlleDAlt-DrD~vhRqta~nvI~Hl~L 870 (975)
T COG5181 828 FEYIGQASLDYV--YSITPLLEDALT-DRDPVHRQTAMNVIRHLVL 870 (975)
T ss_pred HHHHHHHHHHHH--HHhhHHHHhhhc-ccchHHHHHHHHHHHHHhc
Confidence 4321 222222 234455555553 3444455667777776654
|
|
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.99 E-value=12 Score=35.56 Aligned_cols=233 Identities=17% Similarity=0.132 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHhccCchhhH-HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcc--cc--h-h-hhh--hcCchHH
Q 021242 22 TRAEALAELRLLSKHDAEIRP-MISEAGSIPYLAEILYSSSHAFQENAAATLLNLSIT--SR--D-S-LMS--TRGLLDA 92 (315)
Q Consensus 22 ~~~~a~~~L~~l~~~~~~~~~-~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~--~~--~-~-~i~--~~~~i~~ 92 (315)
++.+|.+++..++-+ +..|. ...-.......+..|.+..-..|+.+++++.|++.- .. + + .-. ..-.+..
T Consensus 407 v~~aA~Ra~~VyVLH-p~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~ 485 (728)
T KOG4535|consen 407 VKAAASRALGVYVLH-PCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLK 485 (728)
T ss_pred HHHHHHhhceeEEec-cchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHH
Confidence 555666666666665 34443 223355566666666665566899999999998643 21 1 1 100 1112444
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCC------chhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccC
Q 021242 93 ISHVLRHHSTSTSSAAVQSSAATLHSLLVVDS------YRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALY 166 (315)
Q Consensus 93 L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~------~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~ 166 (315)
+++.-.. ....+..++.++.++|.|+...-+ ++..+ + +.+..+....-. .+..+++.+|+-++.||-.+
T Consensus 486 ~~~~A~~-~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~-~--~~~~~l~~~v~~-~~~~kV~WNaCya~gNLfkn 560 (728)
T KOG4535|consen 486 MLRSAIE-ASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEII-E--ESIQALISTVLT-EAAMKVRWNACYAMGNLFKN 560 (728)
T ss_pred HHHHHHH-hhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHH-H--HHHHhcccceec-ccccccchHHHHHHHHhhcC
Confidence 4443321 011345677889999999985321 12222 2 224444443222 35678999999999999998
Q ss_pred CCcHHHHHh--hCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcC--CHHHHHHHhhcCCCCChhHHHHH
Q 021242 167 PLNRYQVIA--LGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCC--GIGVLVDLLDLGTGSGHRVKENA 242 (315)
Q Consensus 167 ~~~~~~i~~--~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~--~i~~Lv~ll~~~~~~~~~~~~~a 242 (315)
+..+.+-.+ .-+.+.|..++.+..+..++..|.++|..-... ....+.= -...++..|... -+..
T Consensus 561 ~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~r----e~~~d~~~Lsw~~lv~aLi~s-------~~~v 629 (728)
T KOG4535|consen 561 PALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKR----EQYGDQYALSWNALVTALQKS-------EDTI 629 (728)
T ss_pred ccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCc----ccchhHHhHHHHHHHHHHHHH-------HHHH
Confidence 766443222 245667788887667888898999888865442 2221111 134555555421 1123
Q ss_pred HHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhC
Q 021242 243 VSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNG 279 (315)
Q Consensus 243 ~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~ 279 (315)
+-++++.+.. ..+.+ ..++.++..++++.
T Consensus 630 ~f~eY~~~Ds----l~~q~----c~av~hll~la~Ss 658 (728)
T KOG4535|consen 630 DFLEYKYCDS----LRTQI----CQALIHLLSLASSS 658 (728)
T ss_pred HHHHHHHHHH----HHHHH----HHHHHHHHHHhhcc
Confidence 4456665532 33344 33666777777763
|
|
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.94 E-value=15 Score=37.39 Aligned_cols=190 Identities=12% Similarity=0.094 Sum_probs=105.2
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhh
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLM 84 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i 84 (315)
.......+..+.++-+.+|-.|+..|+.+...- .-...+...+++...+++|++.|+=+--.|+..+--||. +
T Consensus 726 ~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lce------v 798 (982)
T KOG4653|consen 726 IEPLQEAISSLHDDQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCE------V 798 (982)
T ss_pred HHHHHHHHHHhcCCcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHH------h
Confidence 334555666667777889999999999999653 445566679999999999999887665666664433331 1
Q ss_pred hhcCchHHHHH-HHhcCCCCCCHHHHHHHHHHHHHhhc-CCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHH
Q 021242 85 STRGLLDAISH-VLRHHSTSTSSAAVQSSAATLHSLLV-VDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFG 162 (315)
Q Consensus 85 ~~~~~i~~L~~-lL~~~~~~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~ 162 (315)
.....+|.+.. +.... .-..++.+...-.++.++.. -.+-.. ...+-++....+.+++ .+...+..++..|.+
T Consensus 799 y~e~il~dL~e~Y~s~k-~k~~~d~~lkVGEai~k~~qa~Gel~~--~y~~~Li~tfl~gvre--pd~~~RaSS~a~lg~ 873 (982)
T KOG4653|consen 799 YPEDILPDLSEEYLSEK-KKLQTDYRLKVGEAILKVAQALGELVF--KYKAVLINTFLSGVRE--PDHEFRASSLANLGQ 873 (982)
T ss_pred cchhhHHHHHHHHHhcc-cCCCccceehHHHHHHHHHHHhccHHH--HHHHHHHHHHHHhcCC--chHHHHHhHHHHHHH
Confidence 34455666666 33210 00123444444466666553 222111 1111223333344442 244557778888888
Q ss_pred hccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHh
Q 021242 163 IALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIA 206 (315)
Q Consensus 163 Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~ 206 (315)
||+-.+.+..=.-..++.-++.+...+++..++..|.-++..+-
T Consensus 874 Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL 917 (982)
T KOG4653|consen 874 LCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELL 917 (982)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHH
Confidence 88622111000112233334444443445566777777777653
|
|
| >PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=89.92 E-value=1.5 Score=37.54 Aligned_cols=123 Identities=19% Similarity=0.179 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHhcCcccc----hhhhhhcCchHHHHHHHhcC--------CC---CCCHHHHHHHHHHHHHhhcCCCchh
Q 021242 63 AFQENAAATLLNLSITSR----DSLMSTRGLLDAISHVLRHH--------ST---STSSAAVQSSAATLHSLLVVDSYRP 127 (315)
Q Consensus 63 ~~~~~a~~~L~~la~~~~----~~~i~~~~~i~~L~~lL~~~--------~~---~~~~~~~~~a~~~L~~Ls~~~~~~~ 127 (315)
.+|++|.-+|.|++..-+ ..-+ ..-.++-|+...-.+ ++ .....-+..+..+|+.|+..+.|.+
T Consensus 81 ~lREnalV~laNisgqLdLs~~~e~I-~~PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqrlaLEaLcKLsV~e~NVD 159 (257)
T PF12031_consen 81 QLRENALVTLANISGQLDLSDYPESI-ARPILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQRLALEALCKLSVIENNVD 159 (257)
T ss_pred HHhhcceEeeeeeeeeeecccCchHH-HHHHHHHHHHHHhccchhccCCCCCCCCCCCCCHHHHHHHHHHHhheeccCcc
Confidence 477888888888876532 1111 111233333332111 10 0112346789999999999999988
Q ss_pred hhhhccc------cHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcH--HHHHhhCCcHHHHHHHh
Q 021242 128 IIGAKRD------IIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNR--YQVIALGGVQPLFSLVV 187 (315)
Q Consensus 128 ~i~~~~g------~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~--~~i~~~g~v~~L~~lL~ 187 (315)
.+..++. ++..|+.++.. ++++-.++-|+-.|.+|+..++.. ....+.++|..|+.++.
T Consensus 160 liLaTpp~sRlE~l~~~L~r~l~~-~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE 226 (257)
T PF12031_consen 160 LILATPPFSRLERLFHTLVRLLGM-REDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIE 226 (257)
T ss_pred eeeeCCCHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHH
Confidence 8876544 33445555544 467788889999999999966543 33456799999999996
|
This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM. |
| >PF10363 DUF2435: Protein of unknown function (DUF2435) | Back alignment and domain information |
|---|
Probab=89.86 E-value=0.79 Score=33.29 Aligned_cols=72 Identities=22% Similarity=0.226 Sum_probs=56.8
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcc
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSIT 78 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~ 78 (315)
+......+..|.++.+.+|..|+..|+.+..... ...+-..+++..+...|+++|+=+--+|+..|..|+..
T Consensus 2 ~~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~ 73 (92)
T PF10363_consen 2 RETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADR 73 (92)
T ss_pred hHHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999999987644 12222367788888888888887888888888887743
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=89.72 E-value=8.4 Score=37.50 Aligned_cols=131 Identities=16% Similarity=0.194 Sum_probs=76.6
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhcCc
Q 021242 10 SLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTRGL 89 (315)
Q Consensus 10 ~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~ 89 (315)
.++..-+ +++..+.-|...|..+.++-|+ .+..+|..+++|..+.|..+|..|+..|..+|.++..-+ ...
T Consensus 27 ~il~~~k-g~~k~K~Laaq~I~kffk~FP~-----l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v---~kv 97 (556)
T PF05918_consen 27 EILDGVK-GSPKEKRLAAQFIPKFFKHFPD-----LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHV---SKV 97 (556)
T ss_dssp HHHHGGG-S-HHHHHHHHHHHHHHHCC-GG-----GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-H---HHH
T ss_pred HHHHHcc-CCHHHHHHHHHHHHHHHhhChh-----hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHH---hHH
Confidence 3444434 5678888899999998888777 344568899999999999999999999999998753211 113
Q ss_pred hHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhh-ccCCChHHHHHHHHHHH
Q 021242 90 LDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIK-TRNSPLRSVKDALKALF 161 (315)
Q Consensus 90 i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~-~~~~~~~~~~~a~~aL~ 161 (315)
.+.|.++|.+ +++.-....-.+|..|-..+. .+.+..|++-+. .+.++..+++.++..|.
T Consensus 98 aDvL~QlL~t----dd~~E~~~v~~sL~~ll~~d~--------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 98 ADVLVQLLQT----DDPVELDAVKNSLMSLLKQDP--------KGTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp HHHHHHHTT-------HHHHHHHHHHHHHHHHH-H--------HHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred HHHHHHHHhc----ccHHHHHHHHHHHHHHHhcCc--------HHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 6778888886 343333344445555443222 122344444332 11246667777777664
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.22 E-value=32 Score=36.24 Aligned_cols=225 Identities=19% Similarity=0.139 Sum_probs=117.8
Q ss_pred CCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc-C-CCchhhhhhccccHH
Q 021242 60 SSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV-V-DSYRPIIGAKRDIIH 137 (315)
Q Consensus 60 ~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~-~-~~~~~~i~~~~g~i~ 137 (315)
.+..+|..+-.+|-.++..+.-... ...-+..+...|.+.-.......+.....+|..|-. . .+....+.. . |+
T Consensus 666 ~~~~vQkK~yrlL~~l~~~~s~~~~-~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k--~-I~ 741 (1176)
T KOG1248|consen 666 SSTKVQKKAYRLLEELSSSPSGEGL-VEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPK--L-IP 741 (1176)
T ss_pred ccHHHHHHHHHHHHHHhcCCchhhH-HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHH--H-HH
Confidence 4678999999999887766321111 111233333333210000233445556666666653 2 233444432 2 45
Q ss_pred HHHHHhhccCCChHHHHHHHHHHHHhcc----CCCcHHHHHhhCCcHHHHHHHhcC-CCcchHHHHHHHHHHHhcChhhH
Q 021242 138 SLIEIIKTRNSPLRSVKDALKALFGIAL----YPLNRYQVIALGGVQPLFSLVVNG-GRAGIVEDASAVIAQIAGCEESV 212 (315)
Q Consensus 138 ~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~----~~~~~~~i~~~g~v~~L~~lL~~~-~~~~~~~~a~~~L~~L~~~~~~~ 212 (315)
.++=.++ ..+...++.|..+|..|+. .++.-.. ....+..++..+... -.......+..++ .+...-...
T Consensus 742 EvIL~~K--e~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isagl~gd~~~~~as~Iv-ai~~il~e~ 816 (1176)
T KOG1248|consen 742 EVILSLK--EVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAGLVGDSTRVVASDIV-AITHILQEF 816 (1176)
T ss_pred HHHHhcc--cccHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhhhcccHHHHHHHHHH-HHHHHHHHH
Confidence 4444445 4577888899999988883 1111000 111344444444311 0122222222222 221111111
Q ss_pred HHHHhcCCHHHHHH----HhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHH
Q 021242 213 DEFKKCCGIGVLVD----LLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAV 288 (315)
Q Consensus 213 ~~i~~~~~i~~Lv~----ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~ 288 (315)
..+.+.+.++.+++ +|..+ ++.+...|++.+..++...++.+...-+ .-.++.+..+.+...-.+|.+..
T Consensus 817 ~~~ld~~~l~~li~~V~~~L~s~---sreI~kaAI~fikvlv~~~pe~~l~~~~---~~LL~sll~ls~d~k~~~r~Kvr 890 (1176)
T KOG1248|consen 817 KNILDDETLEKLISMVCLYLASN---SREIAKAAIGFIKVLVYKFPEECLSPHL---EELLPSLLALSHDHKIKVRKKVR 890 (1176)
T ss_pred hccccHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHcCCHHHHhhhH---HHHHHHHHHHHHhhhHHHHHHHH
Confidence 22222233344444 44443 8899999999999998866543211111 34788888888888999999999
Q ss_pred HHHHHH-hhCCC
Q 021242 289 ALLKIL-VDDGN 299 (315)
Q Consensus 289 ~~L~~l-~~~~~ 299 (315)
.+|..| +.++.
T Consensus 891 ~LlekLirkfg~ 902 (1176)
T KOG1248|consen 891 LLLEKLIRKFGA 902 (1176)
T ss_pred HHHHHHHHHhCH
Confidence 998887 44544
|
|
| >cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) | Back alignment and domain information |
|---|
Probab=89.08 E-value=2.3 Score=33.53 Aligned_cols=72 Identities=13% Similarity=0.142 Sum_probs=60.4
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccC-chhhHHHHhCCCHHHHHHHHcC-CCHHHHHHHHHHHHhcC
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHD-AEIRPMISEAGSIPYLAEILYS-SSHAFQENAAATLLNLS 76 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~la 76 (315)
+..+..+-..|+++++.++..|+..|-.+.++- ..-...+.+.+.+..|+.++.. .++.++..++..+..-+
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence 567788889999999999999999999999873 4456788889999999999974 56789999999886554
|
The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane. |
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=88.99 E-value=3.6 Score=38.68 Aligned_cols=112 Identities=18% Similarity=0.183 Sum_probs=79.9
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCch--------hhHHHHhC----CCHHHHHHHHcCCCHHHHHHHHHHHH
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAE--------IRPMISEA----GSIPYLAEILYSSSHAFQENAAATLL 73 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~--------~~~~i~~~----g~i~~Lv~lL~~~~~~~~~~a~~~L~ 73 (315)
..+..|+++|++ ++....++..+.-+..+.+. +-+.+.+. -.+|.|++..+..+.+.+..-+.+|.
T Consensus 271 ~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs 348 (415)
T PF12460_consen 271 ELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALS 348 (415)
T ss_pred HHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHH
Confidence 456788888887 57778888888888766332 22223222 34778888887777678888888888
Q ss_pred hcCcccchhhhh--hcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCC
Q 021242 74 NLSITSRDSLMS--TRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVD 123 (315)
Q Consensus 74 ~la~~~~~~~i~--~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~ 123 (315)
.+-.+-++.++. -+..+|.|++-|.. ++.+++..+..+|..+....
T Consensus 349 ~ll~~vP~~vl~~~l~~LlPLLlqsL~~----~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 349 HLLKNVPKSVLLPELPTLLPLLLQSLSL----PDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHhhCCHHHHHHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHHHcC
Confidence 887776654432 24478888999975 67788999999999887655
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.55 E-value=6.8 Score=40.54 Aligned_cols=150 Identities=13% Similarity=0.089 Sum_probs=92.5
Q ss_pred ccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHH
Q 021242 134 DIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVD 213 (315)
Q Consensus 134 g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~ 213 (315)
++++.|+..++ +.+..++..|++-+..+...-. .-.-..++...++++.--.+......+|-+|+.|+...--..
T Consensus 341 ~vie~Lls~l~--d~dt~VrWSaAKg~grvt~rlp---~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 341 FVIEHLLSALS--DTDTVVRWSAAKGLGRVTSRLP---PELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHhcc--CCcchhhHHHHHHHHHHHccCc---HHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence 55777777777 5678899999999998887322 112234566677766421234566678889998876432222
Q ss_pred HHHhcCCHHHHHHHhhcCC-----CCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHH-HHHh----hCCHHH
Q 021242 214 EFKKCCGIGVLVDLLDLGT-----GSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIA-DVAQ----NGSAKG 283 (315)
Q Consensus 214 ~i~~~~~i~~Lv~ll~~~~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~-~ll~----~~~~~~ 283 (315)
...+ ..+|.+++.+.-.+ .....+++.||.++|.+++++++. .| .+++..|. .++. +.+-..
T Consensus 416 s~l~-dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~---~l----~p~l~~L~s~LL~~AlFDrevnc 487 (1133)
T KOG1943|consen 416 SLLE-DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPS---DL----KPVLQSLASALLIVALFDREVNC 487 (1133)
T ss_pred HHHH-HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChh---hh----hHHHHHHHHHHHHHHhcCchhhH
Confidence 2211 23455555443211 124578999999999999987654 22 23444333 2222 235678
Q ss_pred HHHHHHHHHHHhh
Q 021242 284 KTKAVALLKILVD 296 (315)
Q Consensus 284 k~~A~~~L~~l~~ 296 (315)
|+.|..+++..-+
T Consensus 488 RRAAsAAlqE~VG 500 (1133)
T KOG1943|consen 488 RRAASAALQENVG 500 (1133)
T ss_pred hHHHHHHHHHHhc
Confidence 8888888888765
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.38 E-value=31 Score=34.93 Aligned_cols=206 Identities=16% Similarity=0.134 Sum_probs=121.4
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchh-hhhh
Q 021242 8 VRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDS-LMST 86 (315)
Q Consensus 8 i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~-~i~~ 86 (315)
-..|.++|.+.....+..|..-|..+-.++.+ -....|.+|+...+.+.+++.-.--.|...|...++- +.
T Consensus 37 ~~dL~~lLdSnkd~~KleAmKRIia~iA~G~d------vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL-- 108 (968)
T KOG1060|consen 37 HDDLKQLLDSNKDSLKLEAMKRIIALIAKGKD------VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL-- 108 (968)
T ss_pred hHHHHHHHhccccHHHHHHHHHHHHHHhcCCc------HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee--
Confidence 35788999988777888888777665433333 1234788999999999999988888888888766543 22
Q ss_pred cCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHH-HHHHHhhccCCChHHHHHHHHHHHHhcc
Q 021242 87 RGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIH-SLIEIIKTRNSPLRSVKDALKALFGIAL 165 (315)
Q Consensus 87 ~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~-~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~ 165 (315)
-|..+-+-|++ +++.++..|.++|..+ |..+.. +++- .+-+... +.++-++..|+.|+-.|=+
T Consensus 109 --SIntfQk~L~D----pN~LiRasALRvlSsI------Rvp~Ia--PI~llAIk~~~~--D~s~yVRk~AA~AIpKLYs 172 (968)
T KOG1060|consen 109 --SINTFQKALKD----PNQLIRASALRVLSSI------RVPMIA--PIMLLAIKKAVT--DPSPYVRKTAAHAIPKLYS 172 (968)
T ss_pred --eHHHHHhhhcC----CcHHHHHHHHHHHHhc------chhhHH--HHHHHHHHHHhc--CCcHHHHHHHHHhhHHHhc
Confidence 35566677776 6777776665555442 222211 2111 1112333 3467889999999988766
Q ss_pred -CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHH
Q 021242 166 -YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVS 244 (315)
Q Consensus 166 -~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~ 244 (315)
+++.+.+++ ..+-.+| .+.++.+.-.|+.+...+| ++..+-+ ++-..++..++.+ .+.+-|-..+.
T Consensus 173 Ld~e~k~qL~-----e~I~~LL-aD~splVvgsAv~AF~evC--PerldLI--HknyrklC~ll~d---vdeWgQvvlI~ 239 (968)
T KOG1060|consen 173 LDPEQKDQLE-----EVIKKLL-ADRSPLVVGSAVMAFEEVC--PERLDLI--HKNYRKLCRLLPD---VDEWGQVVLIN 239 (968)
T ss_pred CChhhHHHHH-----HHHHHHh-cCCCCcchhHHHHHHHHhc--hhHHHHh--hHHHHHHHhhccc---hhhhhHHHHHH
Confidence 566666553 2333444 4556666666766666654 3322222 2234444444443 24444444444
Q ss_pred HHHHHh
Q 021242 245 ALLNLV 250 (315)
Q Consensus 245 ~L~~l~ 250 (315)
.|..-|
T Consensus 240 mL~RYA 245 (968)
T KOG1060|consen 240 MLTRYA 245 (968)
T ss_pred HHHHHH
Confidence 444433
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.97 E-value=21 Score=35.20 Aligned_cols=173 Identities=18% Similarity=0.090 Sum_probs=98.0
Q ss_pred CCCCHHHHHHHHHHHHHHhccCchhhHHHH---hCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc-hhhhhhcCchH
Q 021242 16 GSVSEQTRAEALAELRLLSKHDAEIRPMIS---EAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR-DSLMSTRGLLD 91 (315)
Q Consensus 16 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~---~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~-~~~i~~~~~i~ 91 (315)
..-+++.+.-|+..|+-++++...+-..+- ....+..++..+. .++.-+..++++|.|+-.+.- .+++... .+
T Consensus 554 ~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~--~~ 630 (745)
T KOG0301|consen 554 LQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSR--LE 630 (745)
T ss_pred hcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHH--HH
Confidence 334457788899999988877554433222 2335556666665 567788889999999988853 4444222 33
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHhhc--CCCchhhhhhccccHHHHHHHhhc---cCCChHHHHHHHHHHHHhccC
Q 021242 92 AISHVLRHHSTSTSSAAVQSSAATLHSLLV--VDSYRPIIGAKRDIIHSLIEIIKT---RNSPLRSVKDALKALFGIALY 166 (315)
Q Consensus 92 ~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~--~~~~~~~i~~~~g~i~~Lv~ll~~---~~~~~~~~~~a~~aL~~Ls~~ 166 (315)
.+...+-..++.++-.++...+....|++. ...+.. + ++ .+.+...+.. +-.+.+..-..+-||.+|+..
T Consensus 631 ~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~-~---~~-~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~ 705 (745)
T KOG0301|consen 631 SILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ-L---EG-KEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTV 705 (745)
T ss_pred HHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc-c---ch-HHHHHHHHHhhcccchhHHHHHHHHHHHHhhccc
Confidence 333333222222333455444444445552 233222 2 23 3444443331 122334445567788888888
Q ss_pred CCcHHHHHhhCCcHHHHHHHhcCCCcchHH
Q 021242 167 PLNRYQVIALGGVQPLFSLVVNGGRAGIVE 196 (315)
Q Consensus 167 ~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~ 196 (315)
+.+..++.+.-.+..++.-+.+..+.+..+
T Consensus 706 ~~~~~~~A~~~~v~sia~~~~~~~~~~~~k 735 (745)
T KOG0301|consen 706 DASVIQLAKNRSVDSIAKKLKEAVSNPSGK 735 (745)
T ss_pred cHHHHHHHHhcCHHHHHHHHHHhccCchhh
Confidence 888888877777888888776433333333
|
|
| >PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes | Back alignment and domain information |
|---|
Probab=87.79 E-value=5.1 Score=35.08 Aligned_cols=178 Identities=13% Similarity=0.133 Sum_probs=100.6
Q ss_pred HHHHHHHHHHhhcCCCchhhhhhcc-ccHHHHHHHhhcc--CCChHHHHHHHHHHHHhccCCCcHHHHHhh-C-CcHHHH
Q 021242 109 VQSSAATLHSLLVVDSYRPIIGAKR-DIIHSLIEIIKTR--NSPLRSVKDALKALFGIALYPLNRYQVIAL-G-GVQPLF 183 (315)
Q Consensus 109 ~~~a~~~L~~Ls~~~~~~~~i~~~~-g~i~~Lv~ll~~~--~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~-g-~v~~L~ 183 (315)
+.-+...++-++.++.....+.... +....+..++... ...+..+.-++|++.|+-.++..+..+.+. + .+...+
T Consensus 80 ~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~ 159 (268)
T PF08324_consen 80 RFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELL 159 (268)
T ss_dssp -HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHC
T ss_pred chhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHH
Confidence 3445555555555555544444322 2244555555432 245677788999999999999999888754 3 333333
Q ss_pred HHHhcCC---CcchHHHHHHHHHHHhcCh-hhHH-HHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHH
Q 021242 184 SLVVNGG---RAGIVEDASAVIAQIAGCE-ESVD-EFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAA 258 (315)
Q Consensus 184 ~lL~~~~---~~~~~~~a~~~L~~L~~~~-~~~~-~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 258 (315)
..+.... +..++..+..++-|++..- ..+. .-.....+..++..+... ..+++....++.+|.++... + ...
T Consensus 160 ~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~-~~d~Ea~~R~LvAlGtL~~~-~-~~~ 236 (268)
T PF08324_consen 160 SSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSRE-ESDEEALYRLLVALGTLLSS-S-DSA 236 (268)
T ss_dssp HCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCC-HTSHHHHHHHHHHHHHHHCC-S-HHH
T ss_pred HHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHhcc-C-hhH
Confidence 3332222 4566777788888887521 1111 000011234444433322 24788888999999999853 3 333
Q ss_pred HHHHHHccCcHHHHHHHHhh-CCHHHHHHHHHH
Q 021242 259 EEVKEMAMQVADGIADVAQN-GSAKGKTKAVAL 290 (315)
Q Consensus 259 ~~i~~~~~g~~~~L~~ll~~-~~~~~k~~A~~~ 290 (315)
....+ ..|+...+...... ..+++++.+..|
T Consensus 237 ~~~~~-~l~~~~~~~~~~~~~~e~ri~~v~~ei 268 (268)
T PF08324_consen 237 KQLAK-SLDVKSVLSKKANKSKEPRIKEVAAEI 268 (268)
T ss_dssp HHHCC-CCTHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHH-HcChHHHHHHHHhcccchHHHHHhccC
Confidence 44443 24555555555544 578998887654
|
It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A. |
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=87.72 E-value=25 Score=33.09 Aligned_cols=110 Identities=14% Similarity=0.157 Sum_probs=73.1
Q ss_pred cHHHHHHHhcCCCcchHHHHHHHHHHHhcC-hh--------hHHHHHhcC----CHHHHHHHhhcCCCCChhHHHHHHHH
Q 021242 179 VQPLFSLVVNGGRAGIVEDASAVIAQIAGC-EE--------SVDEFKKCC----GIGVLVDLLDLGTGSGHRVKENAVSA 245 (315)
Q Consensus 179 v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~-~~--------~~~~i~~~~----~i~~Lv~ll~~~~~~~~~~~~~a~~~ 245 (315)
+..|+++|. ++.+...+...+..|..+ ++ +.+-+.... .+|.+++..+.. +...|.+...+
T Consensus 273 ~~~L~~lL~---~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~---~~~~k~~yL~A 346 (415)
T PF12460_consen 273 LDKLLELLS---SPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA---DDEIKSNYLTA 346 (415)
T ss_pred HHHHHHHhC---ChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc---ChhhHHHHHHH
Confidence 455777774 245556667777766554 22 222222222 467887777754 45588888999
Q ss_pred HHHHhccCCHHH-HHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhCC
Q 021242 246 LLNLVNFGGERA-AEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDDG 298 (315)
Q Consensus 246 L~~l~~~~~~~~-~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~~ 298 (315)
|..+..+-+... ..++ ...+|.|+.-++.+++.++..+-.+|..+-.+.
T Consensus 347 Ls~ll~~vP~~vl~~~l----~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 347 LSHLLKNVPKSVLLPEL----PTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHhhCCHHHHHHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 999987654332 1222 457888888888899999999999998887655
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5 | Back alignment and domain information |
|---|
Probab=87.67 E-value=2.2 Score=29.50 Aligned_cols=67 Identities=12% Similarity=0.069 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHhhC
Q 021242 109 VQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALG 177 (315)
Q Consensus 109 ~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g 177 (315)
.+.+.+++.+++..+..-..+.+ ..+++.++++...+ ....++--|.-+|.-++...+....+-+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~-~~iv~~iv~~a~~s-~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDE-SDIVEDIVKIAENS-PVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhh-cCHHHHHHHHHHhC-CccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 34788999999988887777765 47799999999863 566788889999999998888877766554
|
|
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=87.39 E-value=4.3 Score=42.35 Aligned_cols=138 Identities=17% Similarity=0.142 Sum_probs=95.8
Q ss_pred HHHHHHh----CCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHc-CCCHHHHHHHHHHHHhcCcccchhh
Q 021242 9 RSLVTKL----GSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILY-SSSHAFQENAAATLLNLSITSRDSL 83 (315)
Q Consensus 9 ~~Lv~~L----~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~la~~~~~~~ 83 (315)
|.+++.. ..++|++|..|..+|..+.--+.+ .-.-.+|.|...+. +++|-+|.+++-+++-++.--++-+
T Consensus 922 piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~-----fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnli 996 (1251)
T KOG0414|consen 922 PIVVEGCRNPGLFSDPELQAAATLALGKLMCISAE-----FCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLI 996 (1251)
T ss_pred HHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHH-----HHHHHHHHHHHHHhcCCCceeeecchheccchhhhccccc
Confidence 4445555 345799999999999988755443 22334899999996 7889999999999988874322211
Q ss_pred hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHh
Q 021242 84 MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGI 163 (315)
Q Consensus 84 i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~L 163 (315)
+ ..-+.|...|.+ .+++++..|..+|.+|-..+ .|.- .|.++.+..+|. +++..+..-|=.....|
T Consensus 997 --e-~~T~~Ly~rL~D----~~~~vRkta~lvlshLILnd----miKV-KGql~eMA~cl~--D~~~~IsdlAk~FF~El 1062 (1251)
T KOG0414|consen 997 --E-PWTEHLYRRLRD----ESPSVRKTALLVLSHLILND----MIKV-KGQLSEMALCLE--DPNAEISDLAKSFFKEL 1062 (1251)
T ss_pred --c-hhhHHHHHHhcC----ccHHHHHHHHHHHHHHHHhh----hhHh-cccHHHHHHHhc--CCcHHHHHHHHHHHHHh
Confidence 1 124455566665 78899999999999998743 3433 466899999998 45777766666555555
Q ss_pred cc
Q 021242 164 AL 165 (315)
Q Consensus 164 s~ 165 (315)
+.
T Consensus 1063 s~ 1064 (1251)
T KOG0414|consen 1063 SS 1064 (1251)
T ss_pred hh
Confidence 54
|
|
| >cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) | Back alignment and domain information |
|---|
Probab=86.84 E-value=5.2 Score=31.07 Aligned_cols=72 Identities=19% Similarity=0.209 Sum_probs=59.5
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCch-hhHHHHhCCCHHHHHHHHcC---CCHHHHHHHHHHHHhcC
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAE-IRPMISEAGSIPYLAEILYS---SSHAFQENAAATLLNLS 76 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~-~~~~i~~~g~i~~Lv~lL~~---~~~~~~~~a~~~L~~la 76 (315)
+..+..|-..|++++|.+|..|+..|-.+.++... ....+.....+..|+.++.. .++.++..++..+...+
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~ 111 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWS 111 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 56778888999999999999999999999987644 56777777888889999975 46789999999986654
|
It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me |
| >PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length | Back alignment and domain information |
|---|
Probab=86.34 E-value=20 Score=30.75 Aligned_cols=157 Identities=17% Similarity=0.108 Sum_probs=88.0
Q ss_pred HHHHHHh-CCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhc
Q 021242 9 RSLVTKL-GSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTR 87 (315)
Q Consensus 9 ~~Lv~~L-~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~ 87 (315)
+.|+..+ +..++..+...+..|..++.++..+. .-++..|..+.+.+....+--+.+.+..+...+++..
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~-----~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f---- 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCV-----PPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF---- 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCccch-----hHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH----
Confidence 4445533 45678999999999999998751111 1223444555555555554456666655554443222
Q ss_pred CchHHHHHHH--h---cCC-CCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHh-hccCCChHHHHHHHHHH
Q 021242 88 GLLDAISHVL--R---HHS-TSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEII-KTRNSPLRSVKDALKAL 160 (315)
Q Consensus 88 ~~i~~L~~lL--~---~~~-~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll-~~~~~~~~~~~~a~~aL 160 (315)
+.+..++..+ + ... .....+.....+..++.++...++ ....+++.+-.++ . ..++.++..++.+|
T Consensus 74 ~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-----~g~~ll~~ls~~L~~--~~~~~~~alale~l 146 (234)
T PF12530_consen 74 PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-----HGVDLLPLLSGCLNQ--SCDEVAQALALEAL 146 (234)
T ss_pred HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-----hHHHHHHHHHHHHhc--cccHHHHHHHHHHH
Confidence 2333333331 1 100 012233444556778888865555 1124577778888 5 45777888899999
Q ss_pred HHhccCCCcHHHHHh-hCCcHHHHHHH
Q 021242 161 FGIALYPLNRYQVIA-LGGVQPLFSLV 186 (315)
Q Consensus 161 ~~Ls~~~~~~~~i~~-~g~v~~L~~lL 186 (315)
..||. ..+++ ..+...+.+-+
T Consensus 147 ~~Lc~-----~~vvd~~s~w~vl~~~l 168 (234)
T PF12530_consen 147 APLCE-----AEVVDFYSAWKVLQKKL 168 (234)
T ss_pred HHHHH-----HhhccHHHHHHHHHHhc
Confidence 99992 22332 24445555555
|
|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.94 E-value=58 Score=35.56 Aligned_cols=149 Identities=13% Similarity=0.063 Sum_probs=83.0
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhh-
Q 021242 7 TVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMS- 85 (315)
Q Consensus 7 ~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~- 85 (315)
-||+|.++=-.+++.+|.......-.+..+ +..-..-.=+.+..-|+.-+.+..=.+|+.++.+|..|-.+.+...+.
T Consensus 999 LIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D-~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e 1077 (1702)
T KOG0915|consen 999 LIPRLYRYQYDPDKKVQDAMTSIWNALITD-SKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKE 1077 (1702)
T ss_pred hhHHHhhhccCCcHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 356666665678878885555444444433 221111111445566666666666679999999999888775432221
Q ss_pred -hcCchHHHHHHHhcCCCCCCHHHHH---HHHHHHHHhhc-CCC--c----hhhhhhccccHHHHHH--HhhccCCChHH
Q 021242 86 -TRGLLDAISHVLRHHSTSTSSAAVQ---SSAATLHSLLV-VDS--Y----RPIIGAKRDIIHSLIE--IIKTRNSPLRS 152 (315)
Q Consensus 86 -~~~~i~~L~~lL~~~~~~~~~~~~~---~a~~~L~~Ls~-~~~--~----~~~i~~~~g~i~~Lv~--ll~~~~~~~~~ 152 (315)
-+..+..+.+.+++ ..+.+|+ .++.+|..|+. ..+ + +..+ + .++|.|++ ++. .-+++
T Consensus 1078 ~lpelw~~~fRvmDD----IKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l-~--~iLPfLl~~gims---~v~ev 1147 (1702)
T KOG0915|consen 1078 KLPELWEAAFRVMDD----IKESVREAADKAARALSKLCVRICDVTNGAKGKEAL-D--IILPFLLDEGIMS---KVNEV 1147 (1702)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHH-H--HHHHHHhccCccc---chHHH
Confidence 12345555555553 3334444 45666666652 111 1 1111 1 23455543 222 34678
Q ss_pred HHHHHHHHHHhccC
Q 021242 153 VKDALKALFGIALY 166 (315)
Q Consensus 153 ~~~a~~aL~~Ls~~ 166 (315)
+.-++.++..|+.+
T Consensus 1148 r~~si~tl~dl~Ks 1161 (1702)
T KOG0915|consen 1148 RRFSIGTLMDLAKS 1161 (1702)
T ss_pred HHHHHHHHHHHHHh
Confidence 88999999999864
|
|
| >cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) | Back alignment and domain information |
|---|
Probab=85.74 E-value=5 Score=31.75 Aligned_cols=73 Identities=8% Similarity=0.159 Sum_probs=61.7
Q ss_pred hhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCc-hhhHHHHhCCCHHHHHHHHcC-CCHHHHHHHHHHHHhcC
Q 021242 4 KRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDA-EIRPMISEAGSIPYLAEILYS-SSHAFQENAAATLLNLS 76 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~la 76 (315)
-+..+..+...|.+++|.++..|+..|-.++++.. .-...+....++..|+.++.. .++.++..++..+...+
T Consensus 35 ~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 35 AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWA 109 (144)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 35677888899999999999999999999997754 346788889999999999987 67889999999986654
|
Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries. |
| >PF08167 RIX1: rRNA processing/ribosome biogenesis | Back alignment and domain information |
|---|
Probab=85.49 E-value=4.8 Score=32.62 Aligned_cols=109 Identities=17% Similarity=0.198 Sum_probs=67.7
Q ss_pred chHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhh-hhccccHHHHHHHhhccCCChHHHHHHHHHHHHhcc--
Q 021242 89 LLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPII-GAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL-- 165 (315)
Q Consensus 89 ~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i-~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~-- 165 (315)
.+..+..+|.+ .+++.+-.++..+.-.....+ ...+ ...+-++..|+++|+. .+++.+...|+.+|..|..
T Consensus 26 l~~ri~~LL~s----~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~-~~~~~~~~~ai~~L~~l~~~~ 99 (165)
T PF08167_consen 26 LVTRINSLLQS----KSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEK-PDPPSVLEAAIITLTRLFDLI 99 (165)
T ss_pred HHHHHHHHhCC----CChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHh
Confidence 45667788886 566777767666666554433 3444 4455788999999996 3566777888888887764
Q ss_pred --CCCcHHHHHh---hCCcHHHHHHHhcCCCcchHHHHHHHHHHHh
Q 021242 166 --YPLNRYQVIA---LGGVQPLFSLVVNGGRAGIVEDASAVIAQIA 206 (315)
Q Consensus 166 --~~~~~~~i~~---~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~ 206 (315)
.|+...++.- .+.++.+++++. + ....+.++.+|..|-
T Consensus 100 ~~~p~l~Rei~tp~l~~~i~~ll~l~~-~--~~~~~~~l~~L~~ll 142 (165)
T PF08167_consen 100 RGKPTLTREIATPNLPKFIQSLLQLLQ-D--SSCPETALDALATLL 142 (165)
T ss_pred cCCCchHHHHhhccHHHHHHHHHHHHh-c--cccHHHHHHHHHHHH
Confidence 3444444332 134445555553 1 345566777776663
|
|
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.32 E-value=17 Score=34.60 Aligned_cols=269 Identities=18% Similarity=0.123 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCccc-----ch--hhhhhcCchHH-
Q 021242 21 QTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITS-----RD--SLMSTRGLLDA- 92 (315)
Q Consensus 21 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~-----~~--~~i~~~~~i~~- 92 (315)
..|.++...|..++.+-.-.+..+++ ....+..-+...+++++++++..|..+-..- +. +--...+.+-.
T Consensus 270 ~~rle~~qvl~~~a~~~~~~~~~~~~--l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~ 347 (728)
T KOG4535|consen 270 PMRLEALQVLTLLARYFSMTQAYLME--LGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTM 347 (728)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHH
Confidence 67888888888888653322333322 2334444445678899999999886664331 10 11111221111
Q ss_pred -----HHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCC
Q 021242 93 -----ISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYP 167 (315)
Q Consensus 93 -----L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~ 167 (315)
.-+...+ ...+..+...|-++.++...+-.+.-=+.....+-.+...=. +.+.-+...|.+++.-+..++
T Consensus 348 ~l~~p~~~~~YD---s~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d--~~~~lv~~aA~Ra~~VyVLHp 422 (728)
T KOG4535|consen 348 MLNGPLPRALYD---SEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCND--SKNRLVKAAASRALGVYVLHP 422 (728)
T ss_pred HccCCChhhhhh---hcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccc--hHHHHHHHHHHhhceeEEecc
Confidence 1122222 122334456666777765322111100000111122222211 123335566888888888888
Q ss_pred CcHHHH-HhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-----ChhhHHHHHhcCC--HHHHHHHhhcCCCCChhHH
Q 021242 168 LNRYQV-IALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-----CEESVDEFKKCCG--IGVLVDLLDLGTGSGHRVK 239 (315)
Q Consensus 168 ~~~~~i-~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-----~~~~~~~i~~~~~--i~~Lv~ll~~~~~~~~~~~ 239 (315)
..+... ....+......-+. +.....++++.+++.|++. .|..+..-....| +..++..-.....+..+++
T Consensus 423 ~lr~d~~fv~~aa~~il~sl~-d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~ 501 (728)
T KOG4535|consen 423 CLRQDVIFVADAANAILMSLE-DKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVK 501 (728)
T ss_pred chhhhHHHHHHHHHHHHHHhh-hHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 766432 23444444455553 3455678999999999864 2222222222222 4455543332222467899
Q ss_pred HHHHHHHHHHhccCCH--H-HHHHHHHHccCcHHHH-HHHHhhCCHHHHHHHHHHHHHHhhCCCC
Q 021242 240 ENAVSALLNLVNFGGE--R-AAEEVKEMAMQVADGI-ADVAQNGSAKGKTKAVALLKILVDDGNM 300 (315)
Q Consensus 240 ~~a~~~L~~l~~~~~~--~-~~~~i~~~~~g~~~~L-~~ll~~~~~~~k~~A~~~L~~l~~~~~~ 300 (315)
.+++.+|.|+...-.. . .-.++.+ |....+ ....-.+...||=+|+..+-||-..+..
T Consensus 502 ~navraLgnllQvlq~i~~~~~~e~~~---~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~ 563 (728)
T KOG4535|consen 502 SNAVRALGNLLQFLQPIEKPTFAEIIE---ESIQALISTVLTEAAMKVRWNACYAMGNLFKNPAL 563 (728)
T ss_pred hHHHHHHhhHHHHHHHhhhccHHHHHH---HHHHhcccceecccccccchHHHHHHHHhhcCccc
Confidence 9999999998653110 0 1133332 333333 3445556789999999999998766554
|
|
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.26 E-value=7.9 Score=33.77 Aligned_cols=57 Identities=18% Similarity=0.279 Sum_probs=29.9
Q ss_pred CHHHHHHHHcC--CCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 021242 49 SIPYLAEILYS--SSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHS 118 (315)
Q Consensus 49 ~i~~Lv~lL~~--~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~ 118 (315)
+||.|.+.|.. .++-+|..|+.+|+.++ ++.+++.|.+++.+ +.+-+++.+.-+|..
T Consensus 219 ai~~L~k~L~d~~E~pMVRhEaAeALGaIa---------~e~~~~vL~e~~~D----~~~vv~esc~valdm 277 (289)
T KOG0567|consen 219 AIPSLIKVLLDETEHPMVRHEAAEALGAIA---------DEDCVEVLKEYLGD----EERVVRESCEVALDM 277 (289)
T ss_pred hhHHHHHHHHhhhcchHHHHHHHHHHHhhc---------CHHHHHHHHHHcCC----cHHHHHHHHHHHHHH
Confidence 36666666643 34556666666665554 44455555555554 333344444444443
|
|
| >PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits [] | Back alignment and domain information |
|---|
Probab=85.17 E-value=29 Score=31.50 Aligned_cols=157 Identities=11% Similarity=0.116 Sum_probs=105.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCc-ccc---hhhhhhcC-chHHHHHHHhcCCCCCC---------HHHHHHHHHH
Q 021242 50 IPYLAEILYSSSHAFQENAAATLLNLSI-TSR---DSLMSTRG-LLDAISHVLRHHSTSTS---------SAAVQSSAAT 115 (315)
Q Consensus 50 i~~Lv~lL~~~~~~~~~~a~~~L~~la~-~~~---~~~i~~~~-~i~~L~~lL~~~~~~~~---------~~~~~~a~~~ 115 (315)
+..+-+.|++..+.+...+++.|..+.. ++. +++...-+ ..+.+.+++........ +++|......
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 8888888988888888899999988887 553 33432222 34556666642210111 1667777666
Q ss_pred HHHhhcC--CCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHH-hccCC----CcHHHHHhhCCcHHHHHHHhc
Q 021242 116 LHSLLVV--DSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFG-IALYP----LNRYQVIALGGVQPLFSLVVN 188 (315)
Q Consensus 116 L~~Ls~~--~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~-Ls~~~----~~~~~i~~~g~v~~L~~lL~~ 188 (315)
+..+... +..+..+.+..+.+..+++-+. .+++++....+.+|+. +..++ ..|..+....++..+..+..
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~--~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~- 214 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLR--KDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYS- 214 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhccc--CCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhc-
Confidence 6655542 2345545555677889999888 5688899999999984 44443 34556777888999999764
Q ss_pred CCCc----chHHHHHHHHHHHhcCh
Q 021242 189 GGRA----GIVEDASAVIAQIAGCE 209 (315)
Q Consensus 189 ~~~~----~~~~~a~~~L~~L~~~~ 209 (315)
..++ .+.+.+-..|..+|.++
T Consensus 215 ~~~~~~~~~~~~~vh~fL~~lcT~p 239 (330)
T PF11707_consen 215 RDGEDEKSSVADLVHEFLLALCTDP 239 (330)
T ss_pred ccCCcccchHHHHHHHHHHHHhcCC
Confidence 3344 67888889999988654
|
The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length. |
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.05 E-value=14 Score=38.84 Aligned_cols=181 Identities=10% Similarity=0.103 Sum_probs=95.7
Q ss_pred CCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCc-----ccc-hhhhhhcCc
Q 021242 16 GSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSI-----TSR-DSLMSTRGL 89 (315)
Q Consensus 16 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~-----~~~-~~~i~~~~~ 89 (315)
++.+...|...+.+|..+.+..+..-..++..-+.+.++.+ +..+...++.|..+|..+.. ++. .+ ....
T Consensus 707 qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~---~~~~ 782 (1176)
T KOG1248|consen 707 QSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEP---ASAI 782 (1176)
T ss_pred hccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccc---hHHH
Confidence 33444667777777777765544222233333333444444 77888889998888877762 111 11 1224
Q ss_pred hHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc-CCCchhhhhh--ccccHHHHHHHhhccCCChHHHHHHHHHHHHhcc-
Q 021242 90 LDAISHVLRHHSTSTSSAAVQSSAATLHSLLV-VDSYRPIIGA--KRDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL- 165 (315)
Q Consensus 90 i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~~--~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~- 165 (315)
+...+..+.-+.. ....+..++. |..+.. .-+.+..+.. ..+++..+..+|. .+++++...|.+.+.-++.
T Consensus 783 lnefl~~Isagl~--gd~~~~~as~-Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~--s~sreI~kaAI~fikvlv~~ 857 (1176)
T KOG1248|consen 783 LNEFLSIISAGLV--GDSTRVVASD-IVAITHILQEFKNILDDETLEKLISMVCLYLA--SNSREIAKAAIGFIKVLVYK 857 (1176)
T ss_pred HHHHHHHHHhhhc--ccHHHHHHHH-HHHHHHHHHHHhccccHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHc
Confidence 5555555553211 1222222221 333221 1121222211 1244555556666 5688999999999998886
Q ss_pred CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHh
Q 021242 166 YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIA 206 (315)
Q Consensus 166 ~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~ 206 (315)
.|+.+..--....+|.++.++. +....++.+.-.+|..|.
T Consensus 858 ~pe~~l~~~~~~LL~sll~ls~-d~k~~~r~Kvr~LlekLi 897 (1176)
T KOG1248|consen 858 FPEECLSPHLEELLPSLLALSH-DHKIKVRKKVRLLLEKLI 897 (1176)
T ss_pred CCHHHHhhhHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHH
Confidence 5655544444456777777764 333445555555555553
|
|
| >cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins | Back alignment and domain information |
|---|
Probab=84.80 E-value=6.4 Score=30.93 Aligned_cols=72 Identities=18% Similarity=0.193 Sum_probs=58.9
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccC-chhhHHHHhCCCHHHHHHHHcC------CCHHHHHHHHHHHHhcC
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHD-AEIRPMISEAGSIPYLAEILYS------SSHAFQENAAATLLNLS 76 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~~------~~~~~~~~a~~~L~~la 76 (315)
+..+..+...|++++|.++..|+..|-.+.+.- ..-...+...+++.-|++++.. .++.++...+..+..-+
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 567788899999999999999999999998764 3456788889999999999953 45789999888885443
|
The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system. |
| >smart00288 VHS Domain present in VPS-27, Hrs and STAM | Back alignment and domain information |
|---|
Probab=84.71 E-value=5.9 Score=30.82 Aligned_cols=72 Identities=13% Similarity=0.126 Sum_probs=58.7
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccC-chhhHHHHhCCCHHHHHHHHcCCC--HHHHHHHHHHHHhcC
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHD-AEIRPMISEAGSIPYLAEILYSSS--HAFQENAAATLLNLS 76 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~~~~--~~~~~~a~~~L~~la 76 (315)
+..+..|-..|++++|.++..|+..|-.+.++. +.-...+....++..|+.+++... +.++..++..+..-+
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 567778888999999999999999999999873 445678888999999999997643 348888888885544
|
Unpublished observations. Domain of unknown function. |
| >cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain | Back alignment and domain information |
|---|
Probab=84.54 E-value=6.4 Score=30.17 Aligned_cols=72 Identities=18% Similarity=0.207 Sum_probs=53.3
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHh-----hC---CHHHHHHHHHHHHH
Q 021242 222 GVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQ-----NG---SAKGKTKAVALLKI 293 (315)
Q Consensus 222 ~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~-----~~---~~~~k~~A~~~L~~ 293 (315)
..|.+-|+.. ++.+|..++.+|..+|..+++..+..+.+ ....+..+...-. .| ...||..|..++..
T Consensus 41 d~L~kRL~~~---~~hVK~K~Lrilk~l~~~G~~~f~~~~~~-~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~ 116 (122)
T cd03572 41 EYLLKRLKRS---SPHVKLKVLKIIKHLCEKGNSDFKRELQR-NSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKA 116 (122)
T ss_pred HHHHHHhcCC---CCcchHHHHHHHHHHHhhCCHHHHHHHHH-hHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHH
Confidence 4566666654 78999999999999999888777777776 3556677665544 11 35899999999888
Q ss_pred HhhC
Q 021242 294 LVDD 297 (315)
Q Consensus 294 l~~~ 297 (315)
+-.+
T Consensus 117 if~~ 120 (122)
T cd03572 117 IFSY 120 (122)
T ss_pred Hhcc
Confidence 7544
|
The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t |
| >KOG2032 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.52 E-value=38 Score=32.29 Aligned_cols=154 Identities=14% Similarity=-0.042 Sum_probs=90.9
Q ss_pred hCCCHHHHHHHHc----CCCHHHHHHHHHHHHhcCccc-chhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhh
Q 021242 46 EAGSIPYLAEILY----SSSHAFQENAAATLLNLSITS-RDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLL 120 (315)
Q Consensus 46 ~~g~i~~Lv~lL~----~~~~~~~~~a~~~L~~la~~~-~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls 120 (315)
+.|.+..++..+. +++...+.-|+..|.|.+..- .+..--..-.+..++.=|.++ .+.++...+..+|..++
T Consensus 252 ~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~---~~~~V~leam~~Lt~v~ 328 (533)
T KOG2032|consen 252 KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDD---LNEEVQLEAMKCLTMVL 328 (533)
T ss_pred ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHH
Confidence 5677766666662 234568888999999998873 221111333577777777762 55677777777777776
Q ss_pred cCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhcc--CCCcHHHHHh---hCCcHHHHHHHhcCCCcchH
Q 021242 121 VVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL--YPLNRYQVIA---LGGVQPLFSLVVNGGRAGIV 195 (315)
Q Consensus 121 ~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~--~~~~~~~i~~---~g~v~~L~~lL~~~~~~~~~ 195 (315)
....+..+...--.+.-.+..++. ..+++++..|...+..|+. ....+..+.+ .+..| ++..|. ++++. .
T Consensus 329 ~~~~~~~l~~~~l~ialrlR~l~~--se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~-lllhl~-d~~p~-v 403 (533)
T KOG2032|consen 329 EKASNDDLESYLLNIALRLRTLFD--SEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAP-LLLHLQ-DPNPY-V 403 (533)
T ss_pred HhhhhcchhhhchhHHHHHHHHHH--hcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhcccc-ceeeeC-CCChH-H
Confidence 655555543322222345666777 5678888888888888776 3445544443 23333 333332 44443 3
Q ss_pred HHHHHHHHHHhc
Q 021242 196 EDASAVIAQIAG 207 (315)
Q Consensus 196 ~~a~~~L~~L~~ 207 (315)
..||+.....|.
T Consensus 404 a~ACr~~~~~c~ 415 (533)
T KOG2032|consen 404 ARACRSELRTCY 415 (533)
T ss_pred HHHHHHHHHhcC
Confidence 455555554443
|
|
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=84.26 E-value=37 Score=34.89 Aligned_cols=178 Identities=16% Similarity=0.077 Sum_probs=105.6
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHH----cCCCHHHHHHHHHHHHhcCcccchh-hh
Q 021242 10 SLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEIL----YSSSHAFQENAAATLLNLSITSRDS-LM 84 (315)
Q Consensus 10 ~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL----~~~~~~~~~~a~~~L~~la~~~~~~-~i 84 (315)
.+-..+.++++..|.+|+..+........ ...+.|....+..++ ++.+..+...|+.+|-.++..-+.. .-
T Consensus 257 ~l~t~~~s~~WK~R~Eale~l~~~l~e~~----~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~ 332 (815)
T KOG1820|consen 257 NLETEMLSKKWKDRKEALEELVAILEEAK----KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK 332 (815)
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHhccc----cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH
Confidence 34455578888999999999998875532 222334444444443 2345567778888887777654311 11
Q ss_pred hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhc
Q 021242 85 STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIA 164 (315)
Q Consensus 85 ~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls 164 (315)
...+..+.++..+.. .....+..+..++..... ...- ...++.+...++ +++|..+..+...+....
T Consensus 333 ~~~~v~p~lld~lke----kk~~l~d~l~~~~d~~~n------s~~l-~~~~~~I~e~lk--~knp~~k~~~~~~l~r~~ 399 (815)
T KOG1820|consen 333 YAKNVFPSLLDRLKE----KKSELRDALLKALDAILN------STPL-SKMSEAILEALK--GKNPQIKGECLLLLDRKL 399 (815)
T ss_pred HHHhhcchHHHHhhh----ccHHHHHHHHHHHHHHHh------cccH-HHHHHHHHHHhc--CCChhhHHHHHHHHHHHH
Confidence 234567788888874 344555544444443332 0111 133667777788 678998888776666554
Q ss_pred c-CC-CcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHH
Q 021242 165 L-YP-LNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQI 205 (315)
Q Consensus 165 ~-~~-~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L 205 (315)
. .+ .+...---.+.+|.++.... |.+.+++..|..++..+
T Consensus 400 ~~~~~~~~~~~t~~~l~p~~~~~~~-D~~~~VR~Aa~e~~~~v 441 (815)
T KOG1820|consen 400 RKLGPKTVEKETVKTLVPHLIKHIN-DTDKDVRKAALEAVAAV 441 (815)
T ss_pred hhcCCcCcchhhHHHHhHHHhhhcc-CCcHHHHHHHHHHHHHH
Confidence 4 22 22222222466777777774 56778888777666655
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.15 E-value=17 Score=36.76 Aligned_cols=160 Identities=16% Similarity=0.096 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcC-CCHHHHHHHHHHHHhcCcccc-hh-hhhhcCc-hHHHHHHH
Q 021242 22 TRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYS-SSHAFQENAAATLLNLSITSR-DS-LMSTRGL-LDAISHVL 97 (315)
Q Consensus 22 ~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~la~~~~-~~-~i~~~~~-i~~L~~lL 97 (315)
.+.... +|++....++.+.+.+.+.|++..+...++. .....+..+...+.|++...+ +. .+..... ...+-.++
T Consensus 488 ~~~~~~-~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~ 566 (699)
T KOG3665|consen 488 DVLEFT-ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLL 566 (699)
T ss_pred HHHHHH-HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence 343444 8889999999999999999999999999986 445688999999999987653 21 1111111 11222222
Q ss_pred hcCCCCCCHHHHHHHHHHHHHhhcCCCc------h----hhhhh-------------ccccHHH-HHHHhhccCCChHHH
Q 021242 98 RHHSTSTSSAAVQSSAATLHSLLVVDSY------R----PIIGA-------------KRDIIHS-LIEIIKTRNSPLRSV 153 (315)
Q Consensus 98 ~~~~~~~~~~~~~~a~~~L~~Ls~~~~~------~----~~i~~-------------~~g~i~~-Lv~ll~~~~~~~~~~ 153 (315)
.. -...+.-..++.+|..+....+. + ..+.+ ....+.+ +..++.. ...+..+
T Consensus 567 ~~---w~~~ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~-s~~~g~~ 642 (699)
T KOG3665|consen 567 NK---WDSIERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRL-SKSDGSQ 642 (699)
T ss_pred hh---cchhhHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcc-cCCCchH
Confidence 21 02235455677777776643221 0 00000 0112233 4445553 2456778
Q ss_pred HHHHHHHHHhcc-CCCcHHHHHhhCCcHHHHHHH
Q 021242 154 KDALKALFGIAL-YPLNRYQVIALGGVQPLFSLV 186 (315)
Q Consensus 154 ~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~L~~lL 186 (315)
..|++++.++.. +++++..+.+.|+++.+...-
T Consensus 643 lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (699)
T KOG3665|consen 643 LWALWTIKNVLEQNKEYCKLVRESNGFELIENIR 676 (699)
T ss_pred HHHHHHHHHHHHcChhhhhhhHhccchhhhhhcc
Confidence 899999999887 567788888889888776654
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.13 E-value=41 Score=34.05 Aligned_cols=53 Identities=19% Similarity=0.246 Sum_probs=45.4
Q ss_pred HHHHhcc-CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhh
Q 021242 159 ALFGIAL-YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEES 211 (315)
Q Consensus 159 aL~~Ls~-~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~ 211 (315)
+||++.. +++++..+++.|++..+...+....+.++...+++++.|++...+.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~ 547 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLEL 547 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhh
Confidence 8889887 6789999999999999999997555678889999999999875544
|
|
| >cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) | Back alignment and domain information |
|---|
Probab=83.59 E-value=9.7 Score=30.12 Aligned_cols=71 Identities=17% Similarity=0.182 Sum_probs=58.8
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhh-CCHHHHHHHHHHHHHHhh
Q 021242 221 IGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQN-GSAKGKTKAVALLKILVD 296 (315)
Q Consensus 221 i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~-~~~~~k~~A~~~L~~l~~ 296 (315)
+..+.+-|.++ ++.++..|+.+|-.+....+.....++.. ..++..|..++.. .++.||+++..+++..+.
T Consensus 39 ~ral~KRl~~~---n~~v~l~AL~LLe~~vkNCG~~fh~evas--k~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 39 LKAIMKRLNHK---DPNVQLRALTLLDACAENCGKRFHQEVAS--RDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHHHHHHCCHHHHHHHhh--HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 56666677765 78999999999999988776667678876 7899999999988 789999999998887764
|
Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries. |
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=83.32 E-value=31 Score=37.47 Aligned_cols=127 Identities=13% Similarity=0.137 Sum_probs=79.6
Q ss_pred HHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhcc-CCCcH-HHHHhhCCcHHHHHHHhc
Q 021242 111 SSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL-YPLNR-YQVIALGGVQPLFSLVVN 188 (315)
Q Consensus 111 ~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~-~~~~~-~~i~~~g~v~~L~~lL~~ 188 (315)
.+.++...|+...+--..+ .+++..++..+. ...+.++..|+++|.++.. +|... ...++.|+...+.
T Consensus 796 ~a~li~~~la~~r~f~~sf---D~yLk~Il~~l~--e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~----- 865 (1692)
T KOG1020|consen 796 DAKLIVFYLAHARSFSQSF---DPYLKLILSVLG--ENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLN----- 865 (1692)
T ss_pred hHHHHHHHHHhhhHHHHhh---HHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhc-----
Confidence 5556666666543322222 356777778887 4578899999999999987 44332 3455566555433
Q ss_pred CCCcchHHHHHHHHHHH-hcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCH
Q 021242 189 GGRAGIVEDASAVIAQI-AGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGE 255 (315)
Q Consensus 189 ~~~~~~~~~a~~~L~~L-~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~ 255 (315)
+....+++.|+..+..- ...++......+ .+..-+.+ ++..++..++.++..+|...++
T Consensus 866 DssasVREAaldLvGrfvl~~~e~~~qyY~-----~i~erIlD---tgvsVRKRvIKIlrdic~e~pd 925 (1692)
T KOG1020|consen 866 DSSASVREAALDLVGRFVLSIPELIFQYYD-----QIIERILD---TGVSVRKRVIKILRDICEETPD 925 (1692)
T ss_pred cchhHHHHHHHHHHhhhhhccHHHHHHHHH-----HHHhhcCC---CchhHHHHHHHHHHHHHHhCCC
Confidence 34678899999988743 333433333322 22222222 3678999999999999976543
|
|
| >PF10363 DUF2435: Protein of unknown function (DUF2435) | Back alignment and domain information |
|---|
Probab=83.10 E-value=7.3 Score=28.21 Aligned_cols=69 Identities=10% Similarity=0.053 Sum_probs=48.3
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHh-cCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCH
Q 021242 181 PLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKK-CCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGE 255 (315)
Q Consensus 181 ~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~ 255 (315)
..+..+. +|..+++..++..|+.|-.... ..+.. .+.+..+...+++. ++.+--+|+..|..|+....+
T Consensus 7 ~al~~L~-dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~---DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 7 EALSDLN-DPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDE---DSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHcc-CCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCC---CchHHHHHHHHHHHHHHHChH
Confidence 3455564 6788999999999999976544 12222 22356666677764 788999999999999875543
|
|
| >KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
Probab=83.00 E-value=7.6 Score=39.59 Aligned_cols=148 Identities=14% Similarity=0.146 Sum_probs=95.4
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHH-h-CCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhh
Q 021242 7 TVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMIS-E-AGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLM 84 (315)
Q Consensus 7 ~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~-~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i 84 (315)
-+|.+++..+.-+...+..=+.+|.+.-++-|. ..+. + .-..|.|++-|+-.|..+|-.+..++.-+......-.-
T Consensus 868 ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~--~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t 945 (1030)
T KOG1967|consen 868 IVPILVSKFETAPGSQKHNYLEALSHVLTNVPK--QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT 945 (1030)
T ss_pred hHHHHHHHhccCCccchhHHHHHHHHHHhcCCH--HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch
Confidence 467888888855557777888888888876443 3333 3 56788888888888999988888888655433221110
Q ss_pred h-hcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHH
Q 021242 85 S-TRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKA 159 (315)
Q Consensus 85 ~-~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~a 159 (315)
. -.-.+|.++.+=+++.+ ...-+++.|..+|..|+..-+.+........++..|.+.|.+ ..--+++.|.++
T Consensus 946 ~~~~Tlvp~lLsls~~~~n-~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdD--kKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 946 EHLSTLVPYLLSLSSDNDN-NMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDD--KKRLVRKEAVDT 1018 (1030)
T ss_pred HHHhHHHHHHHhcCCCCCc-chhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCc--HHHHHHHHHHHH
Confidence 0 11245555555554321 135678899999999998443333333334678888888873 244566777765
|
|
| >KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.65 E-value=64 Score=33.48 Aligned_cols=259 Identities=12% Similarity=0.061 Sum_probs=137.8
Q ss_pred CHHHHHHHHHHHHHHh---ccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCccc--chhhhhhcCchHHH
Q 021242 19 SEQTRAEALAELRLLS---KHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITS--RDSLMSTRGLLDAI 93 (315)
Q Consensus 19 ~~~~~~~a~~~L~~l~---~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~--~~~~i~~~~~i~~L 93 (315)
++-.+..|+..+.+++ ...... +-..+.=.++.+...++++..-+|-.|++++..++.-+ ++... ..+.+..
T Consensus 431 ~~rqkdGAL~~vgsl~~~L~K~s~~-~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l--~~ale~t 507 (1010)
T KOG1991|consen 431 NPRQKDGALRMVGSLASILLKKSPY-KSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNL--SEALELT 507 (1010)
T ss_pred ChhhhhhHHHHHHHHHHHHccCCch-HHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHH--HHHHHHH
Confidence 3455556666666655 222222 23334444666777788888889999999999988543 22222 2356777
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHhhcCCC-chhhhhhc-cccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHH
Q 021242 94 SHVLRHHSTSTSSAAVQSSAATLHSLLVVDS-YRPIIGAK-RDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRY 171 (315)
Q Consensus 94 ~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~-~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~ 171 (315)
...|.+ .....++..|+-+|..+-.+.+ ....+... .+.+..|+++.+. -+.+........+.. ..+++...
T Consensus 508 ~~~l~~---d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne--~End~Lt~vme~iV~-~fseElsP 581 (1010)
T KOG1991|consen 508 HNCLLN---DNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNE--VENDDLTNVMEKIVC-KFSEELSP 581 (1010)
T ss_pred HHHhcc---CCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHh--cchhHHHHHHHHHHH-HHHHhhch
Confidence 777773 1566788889999998876554 33334321 2345566666663 233333444433321 11222222
Q ss_pred HHHh--hCCcHHHHHHHhc-C-CCcchHH---HHHHHHHHHhc---ChhhHHHHHh-cC--CHHHHHHHhhcCCCCChhH
Q 021242 172 QVIA--LGGVQPLFSLVVN-G-GRAGIVE---DASAVIAQIAG---CEESVDEFKK-CC--GIGVLVDLLDLGTGSGHRV 238 (315)
Q Consensus 172 ~i~~--~g~v~~L~~lL~~-~-~~~~~~~---~a~~~L~~L~~---~~~~~~~i~~-~~--~i~~Lv~ll~~~~~~~~~~ 238 (315)
..++ ........+++.. . .++..-+ .|.++|+.+.+ .-+++..+.. -. ..+.+-.++++. -.++
T Consensus 582 fA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~---i~df 658 (1010)
T KOG1991|consen 582 FAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKND---ITDF 658 (1010)
T ss_pred hHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHh---hHHH
Confidence 2222 2445556677752 1 1222222 35566665433 2233333322 22 356666677764 5677
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 021242 239 KENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKIL 294 (315)
Q Consensus 239 ~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l 294 (315)
-+.++.++..++...+ +....| =|.++.+..+.+.+.-.--....-+|++.
T Consensus 659 yeE~~ei~~~~t~~~~-~Isp~m----W~ll~li~e~~~~~~~dyf~d~~~~l~N~ 709 (1010)
T KOG1991|consen 659 YEELLEIVSSLTFLSK-EISPIM----WGLLELILEVFQDDGIDYFTDMMPALHNY 709 (1010)
T ss_pred HHHHHHHHhhhhhhhc-ccCHHH----HHHHHHHHHHHhhhhHHHHHHHHHHHhhh
Confidence 7788888888765442 233344 34666666666654443334444445444
|
|
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=81.66 E-value=35 Score=37.07 Aligned_cols=105 Identities=15% Similarity=0.156 Sum_probs=64.7
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhh-HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhh
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIR-PMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLM 84 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i 84 (315)
.++..++..|.++.+.+|.+|+++|..++..++... ..-++.|+. .-+.++...+|++|+..++......+.-+.
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh----~R~~DssasVREAaldLvGrfvl~~~e~~~ 891 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVH----GRLNDSSASVREAALDLVGRFVLSIPELIF 891 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHH----HhhccchhHHHHHHHHHHhhhhhccHHHHH
Confidence 456778888898899999999999999998776532 233344433 334456678999999999765433221000
Q ss_pred hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc
Q 021242 85 STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV 121 (315)
Q Consensus 85 ~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~ 121 (315)
..-+.+..-+.+ ....++..+..+++.++.
T Consensus 892 ---qyY~~i~erIlD----tgvsVRKRvIKIlrdic~ 921 (1692)
T KOG1020|consen 892 ---QYYDQIIERILD----TGVSVRKRVIKILRDICE 921 (1692)
T ss_pred ---HHHHHHHhhcCC----CchhHHHHHHHHHHHHHH
Confidence 011122222222 345666777777776664
|
|
| >cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins | Back alignment and domain information |
|---|
Probab=80.96 E-value=13 Score=29.23 Aligned_cols=72 Identities=21% Similarity=0.209 Sum_probs=57.2
Q ss_pred CHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhh------CCHHHHHHHHHHHHH
Q 021242 220 GIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQN------GSAKGKTKAVALLKI 293 (315)
Q Consensus 220 ~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~------~~~~~k~~A~~~L~~ 293 (315)
++..+.+-|+++ ++.++-.|+.+|-.+....+.....++.. .+++..|+.++.. .++.||++...+++.
T Consensus 39 a~rai~krl~~~---n~~v~l~AL~LLe~~vkNCG~~fh~evas--~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~ 113 (139)
T cd03567 39 AVRLLAHKIQSP---QEKEALQALTVLEACMKNCGERFHSEVGK--FRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYS 113 (139)
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHHHHHHcCHHHHHHHHh--HHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHH
Confidence 356677777776 78899999999999888665566677876 7899999998863 478999999998887
Q ss_pred Hhh
Q 021242 294 LVD 296 (315)
Q Consensus 294 l~~ 296 (315)
-+.
T Consensus 114 W~~ 116 (139)
T cd03567 114 WTL 116 (139)
T ss_pred HHH
Confidence 765
|
The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system. |
| >cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) | Back alignment and domain information |
|---|
Probab=80.92 E-value=12 Score=29.42 Aligned_cols=72 Identities=18% Similarity=0.163 Sum_probs=57.6
Q ss_pred CHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhh-CCHHHHHHHHHHHHHHhh
Q 021242 220 GIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQN-GSAKGKTKAVALLKILVD 296 (315)
Q Consensus 220 ~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~-~~~~~k~~A~~~L~~l~~ 296 (315)
++..+-+-|+++ ++.++-.|+.+|-.+.+..+.....++.. .+++..|..++.. .++.||+++..+++.-+.
T Consensus 42 a~ral~krl~~~---n~~vql~AL~LLe~~vkNCG~~fh~evas--~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 42 AMRALKKRLLSK---NPNVQLYALLLLESCVKNCGTHFHDEVAS--REFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHcCC---ChHHHHHHHHHHHHHHHHCCHHHHHHHhh--HHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 366777777776 88999999999988888655556677776 7899999998875 688999999998887765
|
The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane. |
| >cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) | Back alignment and domain information |
|---|
Probab=80.82 E-value=14 Score=28.70 Aligned_cols=71 Identities=20% Similarity=0.194 Sum_probs=56.5
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhh---CCHHHHHHHHHHHHHHhh
Q 021242 221 IGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQN---GSAKGKTKAVALLKILVD 296 (315)
Q Consensus 221 i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~---~~~~~k~~A~~~L~~l~~ 296 (315)
+..|-+-|+.+ ++.++..|+.+|-.+....++....++.. ...+..|..++.. .++.||+++..+++....
T Consensus 39 ~raL~krl~~~---n~~vql~AL~lLd~~vkNcg~~f~~~i~s--~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 39 ARAIRKKIKYG---NPHVQLLALTLLELLVKNCGKPFHLQVAD--KEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHHHHHhCChHHHHHHhh--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 56677778876 88999999999999988766556566665 5778788888875 488999999999888765
|
It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me |
| >PF08167 RIX1: rRNA processing/ribosome biogenesis | Back alignment and domain information |
|---|
Probab=80.49 E-value=12 Score=30.30 Aligned_cols=110 Identities=17% Similarity=0.180 Sum_probs=68.6
Q ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhcC--chHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc----C
Q 021242 49 SIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTRG--LLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV----V 122 (315)
Q Consensus 49 ~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~--~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~----~ 122 (315)
.+..+..+|++.++.-+-.++..+...+...+...+.+.+ .+..|+.+|+.+ +.+.+.+.++.+|..+-. .
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~---~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKP---DPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHhcCC
Confidence 3556778888888888888888888777766555443333 588889999862 566777777777777652 2
Q ss_pred CCchhhhhh--ccccHHHHHHHhhccCCChHHHHHHHHHHHHhcc
Q 021242 123 DSYRPIIGA--KRDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL 165 (315)
Q Consensus 123 ~~~~~~i~~--~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~ 165 (315)
++....+.. -.++++.++.+++ +......++.+|..+-.
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~----~~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQ----DSSCPETALDALATLLP 143 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHh----ccccHHHHHHHHHHHHH
Confidence 332222221 1244555555555 13455566666666554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 116 bits (291), Expect = 4e-29
Identities = 51/310 (16%), Positives = 107/310 (34%), Gaps = 18/310 (5%)
Query: 2 EVKRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSS 61
E+ R + L L + +A + LSK +A ++ + + + +++
Sbjct: 10 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN 69
Query: 62 HA-FQENAAATLLNLSITSRD-SLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSL 119
A TL NLS + G + A+ +L S A TLH+L
Sbjct: 70 DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYA----ITTLHNL 125
Query: 120 LVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALY-PLNRYQVIALGG 178
L+ + + ++ ++ N L +A ++ ++A GG
Sbjct: 126 LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFL--AITTDCLQILAYGNQESKLIILASGG 183
Query: 179 VQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRV 238
Q L +++ ++ S V+ ++ C + + G+ L L + R+
Sbjct: 184 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQ---RL 240
Query: 239 KENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDDG 298
+N + L NL + ++ E + + + + T A +L L +
Sbjct: 241 VQNCLWTLRNLSDAATKQEGME------GLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 294
Query: 299 NMNITMTNEE 308
N M +
Sbjct: 295 YKNKMMVCQV 304
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 99.2 bits (247), Expect = 3e-23
Identities = 51/308 (16%), Positives = 108/308 (35%), Gaps = 10/308 (3%)
Query: 8 VRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQEN 67
+ +LV LGS + A+ L L H + + AG + + +L ++ F
Sbjct: 100 IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAI 159
Query: 68 AAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRP 127
L L+ +++S ++ T T + +++ L L V S +P
Sbjct: 160 TTDCLQILAYGNQES-KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP 218
Query: 128 IIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVV 187
I + + +L + + R V++ L L ++ Q G + L L +
Sbjct: 219 AI-VEAGGMQALGLHLTDPSQ--RLVQNCLWTLRNLS--DAATKQEGMEGLLGTLVQL-L 272
Query: 188 NGGRAGIVEDASAVIAQIA-GCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSAL 246
+V A+ +++ + ++ + GI LV + + E A+ AL
Sbjct: 273 GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR-EDITEPAICAL 331
Query: 247 LNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAV-ALLKILVDDGNMNITMT 305
+L + E + + + S KA L++ L + +
Sbjct: 332 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLR 391
Query: 306 NEEILKKL 313
+ + +L
Sbjct: 392 EQGAIPRL 399
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 97.7 bits (243), Expect = 9e-23
Identities = 55/300 (18%), Positives = 100/300 (33%), Gaps = 15/300 (5%)
Query: 8 VRSLVTKLGSVS-EQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQE 66
++LV + + + E+ L++LS +P I EAG + L L S +
Sbjct: 184 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHLTDPSQRLVQ 242
Query: 67 NAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYR 126
N TL NLS + GLL + +L + + A A L +L +
Sbjct: 243 NCLWTLRNLSDAATK-QEGMEGLLGTLVQLLGSDDINVVTCA----AGILSNLTCNNYKN 297
Query: 127 PIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL----YPLNRYQVIALGGVQPL 182
++ + I +L+ + + A+ AL + + + V G+ +
Sbjct: 298 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVV 357
Query: 183 FSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENA 242
L+ +++ +I +A C + ++ I LV LL +
Sbjct: 358 VKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAH---QDTQRRT 414
Query: 243 VSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDDGNMNI 302
G R EE+ E +A N + L L+ NI
Sbjct: 415 SMGGTQQQFVEGVR-MEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENI 473
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 90.8 bits (225), Expect = 2e-20
Identities = 44/311 (14%), Positives = 111/311 (35%), Gaps = 35/311 (11%)
Query: 8 VRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSS--HAFQ 65
+ +LV LGS A L L+ ++ + + M+ + G I L + +
Sbjct: 265 LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 324
Query: 66 ENAAATLLNLSITSRDSLMSTRGLLDA--ISHVLRHHSTSTSSAAVQSSAATLHSLLVVD 123
E A L +L+ +++ M+ + + V++ + ++++ + +L +
Sbjct: 325 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 384
Query: 124 SYRPIIGAKRDIIHSLIEIIKTRNSPLRS--------------------VKDALKALFGI 163
+ + ++ I L++++ + + V+ AL +
Sbjct: 385 ANHAPL-REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHIL 443
Query: 164 ALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGV 223
A NR + L + L+ + I A+ V+ ++A +E+ + +
Sbjct: 444 ARDVHNRIVIRGLNTIPLFVQLLYSP-IENIQRVAAGVLCELAQDKEAAEAIEAEGATAP 502
Query: 224 LVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKG 283
L +LL V A + L + ++ + K +++++ + + +
Sbjct: 503 LTELLHSRN---EGVATYAAAVLFRMSE---DKPQDYKKRLSVEL---TSSLFRTEPMAW 553
Query: 284 KTKAVALLKIL 294
A L I
Sbjct: 554 NETADLGLDIG 564
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 49.2 bits (117), Expect = 1e-06
Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 2/106 (1%)
Query: 3 VKRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSH 62
T+ V L S E + A L L+ D E I G+ L E+L+S +
Sbjct: 454 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELA-QDKEAAEAIEAEGATAPLTELLHSRNE 512
Query: 63 AFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAA 108
AAA L +S + R ++ S + R + + A
Sbjct: 513 GVATYAAAVLFRMS-EDKPQDYKKRLSVELTSSLFRTEPMAWNETA 557
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 4e-27
Identities = 50/310 (16%), Positives = 108/310 (34%), Gaps = 18/310 (5%)
Query: 2 EVKRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSS 61
E+ R + L L + +A + LSK +A ++ + + + +++
Sbjct: 146 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN 205
Query: 62 HA-FQENAAATLLNLSITSRD-SLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSL 119
+ TL NLS + G + A+ ++L S A TLH+L
Sbjct: 206 DVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHA----ITTLHNL 261
Query: 120 LVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALY-PLNRYQVIALGG 178
L+ + + ++ ++ N L +A ++ ++A GG
Sbjct: 262 LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFL--AITTDCLQILAYGNQESKLIILASGG 319
Query: 179 VQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRV 238
Q L +++ ++ S V+ ++ C + + G+ L L + R+
Sbjct: 320 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQ---RL 376
Query: 239 KENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDDG 298
+N + L NL + ++ E + + + + T A +L L +
Sbjct: 377 VQNCLWTLRNLSDAATKQEGME------GLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 430
Query: 299 NMNITMTNEE 308
N M +
Sbjct: 431 YKNKMMVCQV 440
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 3e-24
Identities = 49/287 (17%), Positives = 101/287 (35%), Gaps = 18/287 (6%)
Query: 8 VRSLVTKLGSVSE-QTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQE 66
V ++V + + ++ +T L LS H E I ++G IP L +L S +
Sbjct: 194 VSAIVRTMQNTNDVETARCTSGTLHNLSHHR-EGLLAIFKSGGIPALVNMLGSPVDSVLF 252
Query: 67 NAAATLLNLSITSRDSLMSTR--GLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDS 124
+A TL NL + + M+ R G L + +L + + L L +
Sbjct: 253 HAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAIT----TDCLQILAYGNQ 308
Query: 125 YRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFS 184
+I +L+ I++T + + L +++ N+ ++ GG+Q L
Sbjct: 309 ESKLIILASGGPQALVNIMRTYTYEKL-LWTTSRVLKVLSVCSSNKPAIVEAGGMQALGL 367
Query: 185 LVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVS 244
+ + +V++ + ++ + + +G LV LL V A
Sbjct: 368 HLTD-PSQRLVQNCLWTLRNLSDAATKQEGMEG--LLGTLVQLLGSDD---INVVTCAAG 421
Query: 245 ALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALL 291
L NL + + ++ + + A+
Sbjct: 422 ILSNLTCNNYKNKMMVCQVGGIEA---LVRTVLRAGDREDITEPAIC 465
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 96.6 bits (240), Expect = 2e-22
Identities = 56/313 (17%), Positives = 124/313 (39%), Gaps = 20/313 (6%)
Query: 8 VRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQEN 67
+ +LV LGS + A+ L L H + + AG + + +L ++ F
Sbjct: 236 IPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAI 295
Query: 68 AAATLLNLSITSRDS--LMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSY 125
L L+ +++S ++ G A+ +++R + T + +++ L L V S
Sbjct: 296 TTDCLQILAYGNQESKLIILASGGPQALVNIMRTY---TYEKLLWTTSRVLKVLSVCSSN 352
Query: 126 RPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSL 185
+P I + + +L + + R V++ L L ++ Q G + L L
Sbjct: 353 KPAI-VEAGGMQALGLHLTDPSQ--RLVQNCLWTLRNLS--DAATKQEGMEGLLGTLVQL 407
Query: 186 VVNGGRAGIVEDASAVIAQIA-GCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVS 244
+ + +V A+ +++ + ++ + GI LV + + E A+
Sbjct: 408 LGSDD-INVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRE-DITEPAIC 465
Query: 245 ALLNLVNFGGERAAEEVKEMAMQVADGI---ADVAQNGSAKGKTKA-VALLKILVDDGNM 300
AL +L + + E+ + A+++ G+ + S KA V L++ L
Sbjct: 466 ALRHLTSRHQD---AEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN 522
Query: 301 NITMTNEEILKKL 313
+ + + + +L
Sbjct: 523 HAPLREQGAIPRL 535
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 95.5 bits (237), Expect = 5e-22
Identities = 54/300 (18%), Positives = 99/300 (33%), Gaps = 15/300 (5%)
Query: 8 VRSLVTKLGSVS-EQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQE 66
++LV + + + E+ L++LS +P I EAG + L L S +
Sbjct: 320 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHLTDPSQRLVQ 378
Query: 67 NAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYR 126
N TL NLS + GLL + +L + + A A L +L +
Sbjct: 379 NCLWTLRNLSDAATKQ-EGMEGLLGTLVQLLGSDDINVVTCA----AGILSNLTCNNYKN 433
Query: 127 PIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIA----LYPLNRYQVIALGGVQPL 182
++ + I +L+ + + A+ AL + + + V G+ +
Sbjct: 434 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVV 493
Query: 183 FSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENA 242
L+ +++ +I +A C + ++ I LV LL +
Sbjct: 494 VKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQ---DTQRRT 550
Query: 243 VSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDDGNMNI 302
F EE+ E +A N + L L+ NI
Sbjct: 551 SMGGTQQ-QFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENI 609
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 92.8 bits (230), Expect = 4e-21
Identities = 43/269 (15%), Positives = 95/269 (35%), Gaps = 35/269 (13%)
Query: 8 VRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAF--Q 65
+ +LV LGS A L L+ ++ + + M+ + G I L + +
Sbjct: 401 LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 460
Query: 66 ENAAATLLNLSITSRDSLMSTR-----GLLDAISHVLRHHSTSTSSAAVQSSAATLHSLL 120
E A L +L+ +D+ M+ L + +L S ++++ + +L
Sbjct: 461 EPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPS---HWPLIKATVGLIRNLA 517
Query: 121 VVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRS--------------------VKDALKAL 160
+ + + ++ I L++++ + + V+ AL
Sbjct: 518 LCPANHAPL-REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGAL 576
Query: 161 FGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCG 220
+A NR + L + L+ + I A+ V+ ++A +E+ + +
Sbjct: 577 HILARDIHNRIVIRGLNTIPLFVQLLYSP-IENIQRVAAGVLCELAQDKEAAEAIEAEGA 635
Query: 221 IGVLVDLLDLGTGSGHRVKENAVSALLNL 249
L +LL V A + L +
Sbjct: 636 TAPLTELLHSRN---EGVATYAAAVLFRM 661
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 2e-06
Identities = 26/116 (22%), Positives = 35/116 (30%), Gaps = 7/116 (6%)
Query: 3 VKRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSH 62
T+ V L S E + A L L+ D E I G+ L E+L+S +
Sbjct: 590 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELA-QDKEAAEAIEAEGATAPLTELLHSRNE 648
Query: 63 AFQENAAATLLNLS------ITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSS 112
AAA L +S R S+ T L Q
Sbjct: 649 GVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMTWNETGDLGLDIGAQGE 704
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 5e-27
Identities = 51/306 (16%), Positives = 106/306 (34%), Gaps = 18/306 (5%)
Query: 2 EVKRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSS 61
E+ R + L L + +A + LSK +A ++ + + + +++
Sbjct: 13 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN 72
Query: 62 HA-FQENAAATLLNLSITSRD-SLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSL 119
A TL NLS + G + A+ +L S A TLH+L
Sbjct: 73 DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYA----ITTLHNL 128
Query: 120 LVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALY-PLNRYQVIALGG 178
L+ + + ++ ++ N L +A ++ ++A GG
Sbjct: 129 LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFL--AITTDCLQILAYGNQESKLIILASGG 186
Query: 179 VQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRV 238
Q L +++ ++ S V+ ++ C + + G+ L L + R+
Sbjct: 187 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQ---RL 243
Query: 239 KENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDDG 298
+N + L NL + ++ E + + + + T A +L L +
Sbjct: 244 VQNCLWTLRNLSDAATKQEGME------GLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 297
Query: 299 NMNITM 304
N M
Sbjct: 298 YKNKMM 303
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 95.6 bits (238), Expect = 4e-22
Identities = 55/313 (17%), Positives = 120/313 (38%), Gaps = 20/313 (6%)
Query: 8 VRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQEN 67
+ +LV LGS + A+ L L H + + AG + + +L ++ F
Sbjct: 103 IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAI 162
Query: 68 AAATLLNLSITSRDS--LMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSY 125
L L+ +++S ++ G A+ +++R ++ + L L V S
Sbjct: 163 TTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTT---SRVLKVLSVCSSN 219
Query: 126 RPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSL 185
+P I + + +L + + R V++ L L ++ + G + L L
Sbjct: 220 KPAI-VEAGGMQALGLHLTDPSQ--RLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQL 274
Query: 186 VVNGGRAGIVEDASAVIAQIA-GCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVS 244
+ +V A+ +++ + ++ + GI LV + + E A+
Sbjct: 275 -LGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR-EDITEPAIC 332
Query: 245 ALLNLVNFGGERAAEEVKEMAMQVADGI---ADVAQNGSAKGKTKA-VALLKILVDDGNM 300
AL +L + + AE + A+++ G+ + S KA V L++ L
Sbjct: 333 ALRHLTS--RHQEAEMAQN-AVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN 389
Query: 301 NITMTNEEILKKL 313
+ + + + +L
Sbjct: 390 HAPLREQGAIPRL 402
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 95.2 bits (237), Expect = 5e-22
Identities = 55/300 (18%), Positives = 100/300 (33%), Gaps = 15/300 (5%)
Query: 8 VRSLVTKLGSVS-EQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQE 66
++LV + + + E+ L++LS +P I EAG + L L S +
Sbjct: 187 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHLTDPSQRLVQ 245
Query: 67 NAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYR 126
N TL NLS + GLL + +L + + A A L +L +
Sbjct: 246 NCLWTLRNLSDAATK-QEGMEGLLGTLVQLLGSDDINVVTCA----AGILSNLTCNNYKN 300
Query: 127 PIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL----YPLNRYQVIALGGVQPL 182
++ + I +L+ + + A+ AL + + + V G+ +
Sbjct: 301 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVV 360
Query: 183 FSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENA 242
L+ +++ +I +A C + ++ I LV LL +
Sbjct: 361 VKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAH---QDTQRRT 417
Query: 243 VSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDDGNMNI 302
G R EE+ E +A N + L L+ NI
Sbjct: 418 SMGGTQQQFVEGVR-MEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENI 476
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 86.0 bits (213), Expect = 7e-19
Identities = 42/265 (15%), Positives = 89/265 (33%), Gaps = 27/265 (10%)
Query: 8 VRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAF--Q 65
+ +LV LGS A L L+ ++ + + M+ + G I L + +
Sbjct: 268 LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 327
Query: 66 ENAAATLLNLSITSRDSLMSTRGLLDA-ISHVLRHHSTSTSSAAVQSSAATLHSLLVVDS 124
E A L +L+ +++ M+ + V+ S + + L L +
Sbjct: 328 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 387
Query: 125 YRPIIGAKRDIIHSLIEIIKTRNSPLRS--------------------VKDALKALFGIA 164
++ I L++++ + + V+ AL +A
Sbjct: 388 ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILA 447
Query: 165 LYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVL 224
NR + L + L+ + I A+ V+ ++A +E+ + + L
Sbjct: 448 RDVHNRIVIRGLNTIPLFVQLLYSPI-ENIQRVAAGVLCELAQDKEAAEAIEAEGATAPL 506
Query: 225 VDLLDLGTGSGHRVKENAVSALLNL 249
+LL V A + L +
Sbjct: 507 TELLHSRN---EGVATYAAAVLFRM 528
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 62.9 bits (153), Expect = 3e-11
Identities = 36/224 (16%), Positives = 76/224 (33%), Gaps = 29/224 (12%)
Query: 8 VRSLVTKL--GSVSEQTRAEALAELRLLSKHDAE---IRPMISEAGSIPYLAEILYSSSH 62
+ +LV + E A+ LR L+ E + + +P + ++L+ SH
Sbjct: 310 IEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSH 369
Query: 63 AFQENAAATLLNLSITSRD--SLMSTRGLLDAISHVLRHHSTSTSSAA------------ 108
A L+ + + +G + + +L T
Sbjct: 370 WPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEG 429
Query: 109 ------VQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFG 162
V+ LH L R +I + I ++++ + ++ + A L
Sbjct: 430 VRMEEIVEGCTGALHILARDVHNRIVI-RGLNTIPLFVQLLYSPIENIQ--RVAAGVLCE 486
Query: 163 IALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIA 206
+A + A G PL L+ + G+ A+AV+ +++
Sbjct: 487 LAQDKEAAEAIEAEGATAPLTELLHS-RNEGVATYAAAVLFRMS 529
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 1e-06
Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 3 VKRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSH 62
T+ V L S E + A L L+ D E I G+ L E+L+S +
Sbjct: 457 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELA-QDKEAAEAIEAEGATAPLTELLHSRNE 515
Query: 63 AFQENAAATLLNLS 76
AAA L +S
Sbjct: 516 GVATYAAAVLFRMS 529
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 2e-25
Identities = 45/247 (18%), Positives = 99/247 (40%), Gaps = 14/247 (5%)
Query: 8 VRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQEN 67
+ + +L S Q + A + + E + +AG++P L ++L S + +
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 68 AAATLLNLSITSRDSLMSTR--GLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSY 125
A L N++ + + + G L A+ +L + +Q + L ++ +
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ----ILQEALWALSNIASGGNE 129
Query: 126 RPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIA-LGGVQPLFS 184
+ + +L++++ + N + ++AL AL IA + Q + G + L
Sbjct: 130 QIQAVIDAGALPALVQLLSSPNEQIL--QEALWALSNIASGGNEQIQAVIDAGALPALVQ 187
Query: 185 LVVNGGRAGIVEDASAVIAQIA-GCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAV 243
L+ + I+++A ++ IA G E K+ + L L ++++ A
Sbjct: 188 LLSSPN-EQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN---EKIQKEAQ 243
Query: 244 SALLNLV 250
AL L
Sbjct: 244 EALEKLQ 250
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 4e-13
Identities = 45/256 (17%), Positives = 96/256 (37%), Gaps = 17/256 (6%)
Query: 44 ISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRD--SLMSTRGLLDAISHVLRHHS 101
+P + + L S Q +A + + + G L A+ +L +
Sbjct: 8 HHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPN 67
Query: 102 TSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALF 161
A L ++ + + + +L++++ + N + ++AL AL
Sbjct: 68 EQILQEA----LWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL--QEALWALS 121
Query: 162 GIALY-PLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIA-GCEESVDEFKKCC 219
IA VI G + L L+ + I+++A ++ IA G E +
Sbjct: 122 NIASGGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQIQAVIDAG 180
Query: 220 GIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNG 279
+ LV LL ++ + A+ AL N+ + G E+ + A++ + + +
Sbjct: 181 ALPALVQLLSSPNE---QILQEALWALSNIASGGNEQKQAVKEAGALEK---LEQLQSHE 234
Query: 280 SAKGKTKAVALLKILV 295
+ K + +A L+ L
Sbjct: 235 NEKIQKEAQEALEKLQ 250
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 93.2 bits (231), Expect = 2e-21
Identities = 52/310 (16%), Positives = 115/310 (37%), Gaps = 12/310 (3%)
Query: 3 VKRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSH 62
V V + L + S + + +A+ L ++ + R + + ++ + + S+
Sbjct: 170 VDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKP 229
Query: 63 AFQENAAATLLNLSI--TSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLL 120
+ A TL NL + L ++ ++ T T + + + L
Sbjct: 230 SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTET----LVDACWAISYLS 285
Query: 121 VVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQ 180
I L+E++ ++ ++ AL+A+ I + QV+ GV
Sbjct: 286 DGPQEAIQAVIDVRIPKRLVELLSHESTLVQ--TPALRAVGNIVTGNDLQTQVVINAGVL 343
Query: 181 PLFSLVVNGGRAGIVEDASAVIAQI-AGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVK 239
P L+++ + I ++A I+ I AG E + I LV LL++ ++ K
Sbjct: 344 PALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAE---YKTK 400
Query: 240 ENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDDGN 299
+ A A+ N + G +R ++ + D+ + + + L+ ++ G
Sbjct: 401 KEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGE 460
Query: 300 MNITMTNEEI 309
+ I
Sbjct: 461 ADKEARGLNI 470
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 73.9 bits (181), Expect = 8e-15
Identities = 52/300 (17%), Positives = 108/300 (36%), Gaps = 20/300 (6%)
Query: 8 VRSLVTKLG-SVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQE 66
V LV + + E + EA L ++ + ++ +A ++P ++LY+ S +E
Sbjct: 132 VPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKE 191
Query: 67 NAAATLLNLSITS---RDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVD 123
A L N++ S RD ++ ++ I + + S A TL +L
Sbjct: 192 QAIWALGNVAGDSTDYRDYVLQC-NAMEPILGLFNSNKPSLIRTA----TWTLSNLCRGK 246
Query: 124 SYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQV-IALGGVQPL 182
+P + +L ++I + ++ + DA A+ ++ P Q I + + L
Sbjct: 247 KPQPDWSVVSQALPTLAKLIYSMDTET--LVDACWAISYLSDGPQEAIQAVIDVRIPKRL 304
Query: 183 FSLVVNGGRAGIVEDASAVIAQIA-GCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKEN 241
L+ + + A + I G + GVL L L + +K+
Sbjct: 305 VELLSH-ESTLVQTPALRAVGNIVTGNDLQTQVVINA---GVLPALRLLLSSPKENIKKE 360
Query: 242 AVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDDGNMN 301
A + N+ E+ + + + + + K K +A + G
Sbjct: 361 ACWTISNITAGNTEQIQAVIDANLIPP---LVKLLEVAEYKTKKEACWAISNASSGGLQR 417
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 69.3 bits (169), Expect = 3e-13
Identities = 44/310 (14%), Positives = 106/310 (34%), Gaps = 19/310 (6%)
Query: 1 MEVKRRTVRSLVTKLGSVSEQTRAEALAELR-LLSKHDAEIRPMISEAGSIPYLAEIL-Y 58
++ + + +L S Q + A + R +LS+ ++ +AG +P L E +
Sbjct: 82 YSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRE 141
Query: 59 SSSHAFQENAAATLLNLSITSRDSLMS--TRGLLDAISHVLRHHSTSTSSAAVQSSAATL 116
+ Q AA L N++ + + +L S A+ L
Sbjct: 142 NQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIW----AL 197
Query: 117 HSLLVVDS-YRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIA 175
++ + YR + + + + ++ + + L ++ A L + +
Sbjct: 198 GNVAGDSTDYRDYV-LQCNAMEPILGLFNSNKPSL--IRTATWTLSNLCRGKKPQPDWSV 254
Query: 176 LGGVQPLFSLVVNGGRAGIVEDASAVIAQIA-GCEESVDEFKKCCGIGVLVDLLDLGTGS 234
+ P + ++ + DA I+ ++ G +E++ LV+LL +
Sbjct: 255 VSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTL 314
Query: 235 GHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKIL 294
V+ A+ A+ N+V + + + + + + K +A + +
Sbjct: 315 ---VQTPALRAVGNIVTGNDLQTQVVINAGVLPA---LRLLLSSPKENIKKEACWTISNI 368
Query: 295 VDDGNMNITM 304
I
Sbjct: 369 TAGNTEQIQA 378
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 55.0 bits (132), Expect = 1e-08
Identities = 43/257 (16%), Positives = 84/257 (32%), Gaps = 14/257 (5%)
Query: 60 SSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSL 119
++ + + + L ++ L S S+ +
Sbjct: 59 IPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLN----SDDMQEQLSATVKFRQI 114
Query: 120 LVVDSYRPIIG-AKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGG 178
L + PI + ++ L+E ++ N P +A AL IA + +V+
Sbjct: 115 LSREHRPPIDVVIQAGVVPRLVEFMR-ENQPEMLQLEAAWALTNIASGTSAQTKVVVDAD 173
Query: 179 VQPLFSLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHR 237
PLF ++ G + E A + +AG + D +C + ++ L + S
Sbjct: 174 AVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPS--- 230
Query: 238 VKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDD 297
+ A L NL + V A+ +A + + + A + L D
Sbjct: 231 LIRTATWTLSNLCRGKKPQPDWSVVSQALPT---LAKLIYSMDTETLVDACWAISYLSDG 287
Query: 298 GNMNITMT-NEEILKKL 313
I + I K+L
Sbjct: 288 PQEAIQAVIDVRIPKRL 304
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 53.1 bits (127), Expect = 5e-08
Identities = 42/274 (15%), Positives = 93/274 (33%), Gaps = 27/274 (9%)
Query: 1 MEVKRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSS 60
V + + +L + S+ +T +A + LS E + + L E+L
Sbjct: 252 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE 311
Query: 61 SHAFQENAAATLLNLSITSRDSLMSTR--GLLDAISHVLRHHSTSTSSAAVQSSAATLHS 118
S Q A + N+ + G+L A+ +L + A T+ +
Sbjct: 312 STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEA----CWTISN 367
Query: 119 LLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIAL-- 176
+ ++ + ++I L+++++ + K+A A+ + L R +I
Sbjct: 368 ITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTK--KEACWAISNASSGGLQRPDIIRYLV 425
Query: 177 --GGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGS 234
G ++PL L + I+E + I E+ E + + G
Sbjct: 426 SQGCIKPLCDL-LEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAG--- 481
Query: 235 GHRVKENAVSALLNLVNFGGERAAEEVKEMAMQV 268
+ + N +++ E A ++
Sbjct: 482 -------GMEKIFNCQQNEN----DKIYEKAYKI 504
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 89.6 bits (222), Expect = 4e-20
Identities = 54/316 (17%), Positives = 115/316 (36%), Gaps = 21/316 (6%)
Query: 8 VRSLVTKLGSVS-EQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQE 66
V V L + E+ L ++ ++ ++ +AG++P E+L S QE
Sbjct: 66 VARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQE 125
Query: 67 NAAATLLNLSITS---RDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVD 123
A L N++ S RD ++ + + +L+ S +++ L +L
Sbjct: 126 QAVWALGNIAGDSTMCRDYVLD----CNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181
Query: 124 SYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQ-VIALGGVQPL 182
S P ++ L ++ ++ + + DA AL ++ P ++ Q VI G + L
Sbjct: 182 SPPPEFAKVSPCLNVLSWLLFVSDTDV--LADACWALSYLSDGPNDKIQAVIDAGVCRRL 239
Query: 183 FSLVVNGGRAGIVEDASAVIAQIA-GCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKEN 241
L+++ +V A + I G + C + L+ LL S +K+
Sbjct: 240 VELLMHND-YKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKES---IKKE 295
Query: 242 AVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDDGNMN 301
A + N+ + + + + Q + + +A + G+
Sbjct: 296 ACWTISNITAGNRAQIQTVIDANIFPA---LISILQTAEFRTRKEAAWAITNATSGGSAE 352
Query: 302 --ITMTNEEILKKLKN 315
+ +K L +
Sbjct: 353 QIKYLVELGCIKPLCD 368
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 65.7 bits (160), Expect = 3e-12
Identities = 49/289 (16%), Positives = 104/289 (35%), Gaps = 14/289 (4%)
Query: 33 LSKHDAEI--RPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTR-GL 89
+ H+A+I M + E+++S S Q +A L + +
Sbjct: 3 MGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVIST 62
Query: 90 LDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSP 149
++ + + SA L ++ +S + I + + IE++ +
Sbjct: 63 PGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFED 122
Query: 150 LRSVKDALKALFGIALY-PLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGC 208
++ + A+ AL IA + R V+ + PL L R + +A ++ +
Sbjct: 123 VQ--EQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180
Query: 209 EESVDEFKKCCG-IGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQ 267
+ EF K + VL LL + V +A AL L + ++ + +
Sbjct: 181 KSPPPEFAKVSPCLNVLSWLLFVSDT---DVLADACWALSYLSDGPNDKIQAVIDAGVCR 237
Query: 268 VADGIADVAQNGSAKGKTKAV-ALLKILVDDGNMNITMTNEEILKKLKN 315
+ ++ + K + A+ A+ I+ D + N L+ L +
Sbjct: 238 R---LVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLH 283
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 5e-09
Identities = 32/185 (17%), Positives = 68/185 (36%), Gaps = 8/185 (4%)
Query: 8 VRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQEN 67
R LV L + + AL + + D +I ++ L +L S + ++
Sbjct: 236 CRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKE 295
Query: 68 AAATLLNLSITSRDSLMS--TRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSY 125
A T+ N++ +R + + + A+ +L+ T A A ++ +
Sbjct: 296 ACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAA---WAITNATSGGSAE 352
Query: 126 RPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSL 185
+ + I L +++ +S + V+ AL L I L + G+ P +L
Sbjct: 353 QIKYLVELGCIKPLCDLLTVMDSKI--VQVALNGLENI-LRLGEQEAKRNGTGINPYCAL 409
Query: 186 VVNGG 190
+
Sbjct: 410 IEEAY 414
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 1e-08
Identities = 42/233 (18%), Positives = 80/233 (34%), Gaps = 12/233 (5%)
Query: 1 MEVKRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSS 60
+ L L A+A L LS + + +AG L E+L +
Sbjct: 187 FAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHN 246
Query: 61 SHAFQENAAATLLNLSITSRDS--LMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHS 118
+ A + N+ ++ L ++ H+L S A T+ +
Sbjct: 247 DYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEA----CWTISN 302
Query: 119 LLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRY--QVIAL 176
+ + + +I +LI I++T R K+A A+ ++ L
Sbjct: 303 ITAGNRAQIQTVIDANIFPALISILQTAEFRTR--KEAAWAITNATSGGSAEQIKYLVEL 360
Query: 177 GGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLD 229
G ++PL L + + IV+ A + I E + + GI L++
Sbjct: 361 GCIKPLCDL-LTVMDSKIVQVALNGLENILRLGEQEAK-RNGTGINPYCALIE 411
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 85.0 bits (211), Expect = 7e-20
Identities = 37/199 (18%), Positives = 82/199 (41%), Gaps = 10/199 (5%)
Query: 11 LVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAA 70
+V +L S +Q AL +L ++ E + +AG++P L ++L S + + A
Sbjct: 17 MVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 76
Query: 71 TLLNLSITSRDSLMSTR--GLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPI 128
L N++ + + + G L A+ +L + A L ++ + +
Sbjct: 77 ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA----LWALSNIASGGNEQIQ 132
Query: 129 IGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALY-PLNRYQVIALGGVQPLFSLVV 187
+ +L++++ + N + ++AL AL IA + V G ++ L L
Sbjct: 133 AVIDAGALPALVQLLSSPNEQIL--QEALWALSNIASGGNEQKQAVKEAGALEKLEQL-Q 189
Query: 188 NGGRAGIVEDASAVIAQIA 206
+ I ++A + ++
Sbjct: 190 SHENEKIQKEAQEALEKLQ 208
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 1e-11
Identities = 39/212 (18%), Positives = 81/212 (38%), Gaps = 18/212 (8%)
Query: 44 ISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMS--TRGLLDAISHVLRHHS 101
+P + + L S ++A L ++ + + + G L A+ +L +
Sbjct: 8 HHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPN 67
Query: 102 TSTSSAAVQSSAATLHSLLVVDSY--RPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKA 159
A L ++ + + +I A + +L++++ + N + ++AL A
Sbjct: 68 EQILQEA----LWALSNIASGGNEQIQAVIDA--GALPALVQLLSSPNEQIL--QEALWA 119
Query: 160 LFGIAL-YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIA-GCEESVDEFKK 217
L IA VI G + L L+ + I+++A ++ IA G E K+
Sbjct: 120 LSNIASGGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQKQAVKE 178
Query: 218 CCGIGVLVDLLDLGTGSGHRVKENAVSALLNL 249
+ L L ++++ A AL L
Sbjct: 179 AGALEKLEQLQSHEN---EKIQKEAQEALEKL 207
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 85.8 bits (212), Expect = 7e-19
Identities = 55/301 (18%), Positives = 111/301 (36%), Gaps = 17/301 (5%)
Query: 8 VRSLVTKLG-SVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQE 66
+ V+ LG + + E+ L ++ +E + + G+IP +L S E
Sbjct: 102 IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 161
Query: 67 NAAATLLNLSITS---RDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAA-TLHSLLVV 122
A L N++ RD ++ G +D + +L ST + + TL +L
Sbjct: 162 QAVWALGNIAGDGSAFRDLVIK-HGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN 220
Query: 123 DSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQ-VIALGGVQP 181
+ P + A I+ +L+ ++ + + + D+ A+ + P R + V+ G V
Sbjct: 221 KNPAPPLDAVEQILPTLVRLLHHNDPEV--LADSCWAISYLTDGPNERIEMVVKKGVVPQ 278
Query: 182 LFSLVVNGGRAGIVEDASAVIAQIA-GCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKE 240
L L + IV A I I G +E + + V LL + +++
Sbjct: 279 LVKL-LGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTN---IQK 334
Query: 241 NAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDDGNM 300
A + N+ ++ + V + + V K + +A + G +
Sbjct: 335 EATWTMSNITAGRQDQIQQVVNHGLVPF---LVGVLSKADFKTQKEAAWAITNYTSGGTV 391
Query: 301 N 301
Sbjct: 392 E 392
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 62.7 bits (152), Expect = 3e-11
Identities = 34/216 (15%), Positives = 76/216 (35%), Gaps = 15/216 (6%)
Query: 8 VRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQEN 67
V LV LG+ AL + + E + +AG++ +L + Q+
Sbjct: 276 VPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE 335
Query: 68 AAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRP 127
A T+ N++ +D + +++ S + Q AA +
Sbjct: 336 ATWTMSNITAGRQDQIQQ---VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVE 392
Query: 128 IIG--AKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALY-------PLNRYQVIALGG 178
I II L+ ++ +++ + ++ L A+ I + GG
Sbjct: 393 QIVYLVHCGIIEPLMNLLSAKDTKI--IQVILDAISNIFQAAEKLGETEKLSIMIEECGG 450
Query: 179 VQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDE 214
+ + +L + + + + + +I + EE D+
Sbjct: 451 LDKIEALQRHENES-VYKASLNLIEKYFSVEEEEDQ 485
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 62.7 bits (152), Expect = 3e-11
Identities = 39/258 (15%), Positives = 93/258 (36%), Gaps = 17/258 (6%)
Query: 11 LVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAA 70
LV L + A++ + L+ E M+ + G +P L ++L ++ A
Sbjct: 237 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 296
Query: 71 TLLNLSITSRDS--LMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPI 128
+ N+ + + + G L +L + T+ A T+ ++ +
Sbjct: 297 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA----TWTMSNITAGRQDQIQ 352
Query: 129 IGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRY--QVIALGGVQPLFSLV 186
++ L+ ++ + + K+A A+ ++ G ++PL +L
Sbjct: 353 QVVNHGLVPFLVGVLSKADFKTQ--KEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNL- 409
Query: 187 VNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGI----GVLVDLLDLGTGSGHRVKENA 242
++ I++ I+ I E + E +K + G L + L V + +
Sbjct: 410 LSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKAS 469
Query: 243 VSALLNLVNFGGERAAEE 260
++ + F E ++
Sbjct: 470 LNLIEKY--FSVEEEEDQ 485
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 58.1 bits (140), Expect = 1e-09
Identities = 42/289 (14%), Positives = 92/289 (31%), Gaps = 15/289 (5%)
Query: 34 SKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTRGLLDAI 93
+ S+ + + + S++ Q A L + + I
Sbjct: 43 KAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLI 102
Query: 94 SHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSV 153
+ + S SA L ++ S + I + I ++ + ++ +
Sbjct: 103 PKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHIS-- 160
Query: 154 KDALKALFGIALY-PLNRYQVIALGGVQPLFSLV----VNGGRAGIVEDASAVIAQIAGC 208
+ A+ AL IA R VI G + PL +L+ ++ G + + + ++ +
Sbjct: 161 EQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN 220
Query: 209 EESVDEFKKCCG-IGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQ 267
+ + LV LL V ++ A+ L + ER VK+ +
Sbjct: 221 KNPAPPLDAVEQILPTLVRLLHHND---PEVLADSCWAISYLTDGPNERIEMVVKKGVVP 277
Query: 268 VADGIADVAQNGSAKGKTKAV-ALLKILVDDGNMNITMTNEEILKKLKN 315
+ + T A+ A+ I+ + + L +
Sbjct: 278 Q---LVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPS 323
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 81.9 bits (202), Expect = 1e-17
Identities = 41/254 (16%), Positives = 84/254 (33%), Gaps = 13/254 (5%)
Query: 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMI-SEAGSIPYLAEILYSSSHA 63
+ S R A L L+ D + + S G + L L S S
Sbjct: 199 QVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESED 258
Query: 64 FQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV-V 122
Q+ A+ L NLS + + T + ++ ++ + ++S + L +L
Sbjct: 259 LQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC 318
Query: 123 DSYRPIIGAKRDIIHSLIEIIKTRNSPLRS--VKDALKALFGI----ALYPLNRYQVIAL 176
+ I A + L+ + R+ ++ L + A +R +
Sbjct: 319 TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN 378
Query: 177 GGVQPLFSLVVNGGRAGIVEDASAVIAQI-AGCEESVDEFKKCCGIGVLVDLLDLGTGSG 235
+Q L + IV +A + + A + + + +L +L+
Sbjct: 379 NCLQTLLQH-LKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKH--- 434
Query: 236 HRVKENAVSALLNL 249
+ + +AL NL
Sbjct: 435 KMIAMGSAAALRNL 448
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 70.0 bits (171), Expect = 1e-13
Identities = 41/337 (12%), Positives = 110/337 (32%), Gaps = 28/337 (8%)
Query: 2 EVKRRTVRSLVTKLGSVSEQTRAEALAEL-----RLLSKHDAEIRPMISEAGSIPYLAEI 56
E + R +L + S + R + ++ + + + +
Sbjct: 97 EARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNP 156
Query: 57 LYSSSHAFQENAAATLLNLSITS--RDSLMSTRG------LLDAISHVLRHHSTSTSSAA 108
+ + A L+ LS R ++ G LL + + S
Sbjct: 157 MPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITL 216
Query: 109 VQSSAATLHSLLVVDSY-RPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALY- 166
+ + L +L D + + + + + +L+ +K+ + L+ + L ++
Sbjct: 217 RRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQ--QVIASVLRNLSWRA 274
Query: 167 -PLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIA-GCEESVDEFKKCCG-IGV 223
++ + +G V+ L + + ++ + + ++ C E+ + G +
Sbjct: 275 DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAF 334
Query: 224 LVDLLDLGTGSG-HRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIA---DVAQNG 279
LV L + + + E+ L N+ + A E ++ + + ++
Sbjct: 335 LVGTLTYRSQTNTLAIIESGGGILRNVSSLI---ATNEDHRQILRENNCLQTLLQHLKSH 391
Query: 280 SAKGKTKAV-ALLKILVDDGNMNITMTNEEILKKLKN 315
S + A L + + + + + LKN
Sbjct: 392 SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKN 428
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 63.4 bits (154), Expect = 2e-11
Identities = 41/310 (13%), Positives = 100/310 (32%), Gaps = 55/310 (17%)
Query: 1 MEVKRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSS 60
+ K V SL++ LG+ + + L + + + ++G +P L ++L+ +
Sbjct: 27 LGTKVEMVYSLLSMLGTHDKDDMSRTLLAM----SSSQDSCISMRQSGCLPLLIQLLHGN 82
Query: 61 ------------SHAFQENAAATLLNLSITSRDSLMSTR-----GLLDAI---------- 93
S + A+A L N+ + D R LL+ I
Sbjct: 83 DKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEW 142
Query: 94 -------SHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTR 146
++ + + + L L + +R + + + ++ E+++
Sbjct: 143 QEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAM-NELGGLQAIAELLQVD 201
Query: 147 NSPLRSVKD---------ALKALFGIALYPLNRYQVIAL--GGVQPLFSLVVNGGRAGIV 195
D A AL + + + G ++ L + + +
Sbjct: 202 CEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQ-LKSESEDLQ 260
Query: 196 EDASAVIAQIA--GCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFG 253
+ ++V+ ++ S ++ + L++ ++ +SAL NL
Sbjct: 261 QVIASVLRNLSWRADVNSKKTLREVGSVKALMECAL--EVKKESTLKSVLSALWNLSAHC 318
Query: 254 GERAAEEVKE 263
E A+
Sbjct: 319 TENKADICAV 328
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 52.7 bits (126), Expect = 6e-08
Identities = 16/69 (23%), Positives = 32/69 (46%)
Query: 8 VRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQEN 67
+++L+ L S S + A L LS + + + + + G++ L +++S
Sbjct: 381 LQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMG 440
Query: 68 AAATLLNLS 76
+AA L NL
Sbjct: 441 SAAALRNLM 449
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 80.7 bits (199), Expect = 2e-17
Identities = 41/254 (16%), Positives = 88/254 (34%), Gaps = 13/254 (5%)
Query: 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMI-SEAGSIPYLAEILYSSSHA 63
+ S R A L L+ D + + S G + L L S S
Sbjct: 83 QVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESED 142
Query: 64 FQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV-V 122
Q+ A+ L NLS + + T + ++ ++ + ++S + L +L
Sbjct: 143 LQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC 202
Query: 123 DSYRPIIGAKRDIIHSLIEII--KTRNSPLRSVKDALKALFGI----ALYPLNRYQVIAL 176
+ I A + L+ + +++ + L ++ L + A +R +
Sbjct: 203 TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN 262
Query: 177 GGVQPLFSLVVNGGRAGIVEDASAVIAQI-AGCEESVDEFKKCCGIGVLVDLLDLGTGSG 235
+Q L + + IV +A + + A + + + +L +L+
Sbjct: 263 NCLQTLLQHLKSHS-LTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKH--- 318
Query: 236 HRVKENAVSALLNL 249
+ + +AL NL
Sbjct: 319 KMIAMGSAAALRNL 332
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 70.3 bits (172), Expect = 8e-14
Identities = 36/283 (12%), Positives = 93/283 (32%), Gaps = 26/283 (9%)
Query: 30 LRLLSKH----DAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITS--RDSL 83
L LL + + + + + + A L+ LS R ++
Sbjct: 10 LHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAM 69
Query: 84 MSTRG------LLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDS-YRPIIGAKRDII 136
G LL + + S + + L +L D + + + + +
Sbjct: 70 NELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCM 129
Query: 137 HSLIEIIKTRNSPLRSVKDALKALFGIALY--PLNRYQVIALGGVQPLFSLVVNGGRAGI 194
+L+ +K+ + L+ + L ++ ++ + +G V+ L + +
Sbjct: 130 RALVAQLKSESEDLQ--QVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKEST 187
Query: 195 VEDASAVIAQIA-GCEESVDEFKKCCG-IGVLVDLLDLGTGSG-HRVKENAVSALLNLVN 251
++ + + ++ C E+ + G + LV L + + + E+ L N+ +
Sbjct: 188 LKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSS 247
Query: 252 FGGERAAEEVKEMAMQVADGIA---DVAQNGSAKGKTKAVALL 291
A E ++ + + ++ S + A L
Sbjct: 248 LI---ATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTL 287
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 2e-07
Identities = 16/69 (23%), Positives = 32/69 (46%)
Query: 8 VRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQEN 67
+++L+ L S S + A L LS + + + + + G++ L +++S
Sbjct: 265 LQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMG 324
Query: 68 AAATLLNLS 76
+AA L NL
Sbjct: 325 SAAALRNLM 333
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 8e-07
Identities = 28/134 (20%), Positives = 51/134 (38%), Gaps = 12/134 (8%)
Query: 8 VRSLVTKLGSVSEQTRAEALAELRLLSKH---DAEIRPMISEAGSIPYLAEILYSSSHAF 64
V +L + + + LR +S + + R ++ E + L + L S S
Sbjct: 220 VGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTI 279
Query: 65 QENAAATLLNLSITSRD--SLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVV 122
NA TL NLS + + G + + +++ S SAA L +L+
Sbjct: 280 VSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIH----SKHKMIAMGSAAALRNLM-- 333
Query: 123 DSYRPIIGAKRDII 136
+ RP +I+
Sbjct: 334 -ANRPAKYKDANIM 346
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 78.7 bits (193), Expect = 2e-16
Identities = 42/301 (13%), Positives = 86/301 (28%), Gaps = 25/301 (8%)
Query: 7 TVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQE 66
T+ V L S E+ +A ++ D + + + G I L ++L S + Q+
Sbjct: 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62
Query: 67 NAAATLLNLSI---TSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVD 123
AA L NL T++ G+ +A+S + R + L +L D
Sbjct: 63 AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQL----TGLLWNLSSTD 118
Query: 124 SYRPIIGAK------RDIIHSLIEIIKTRNSPLRSVKD------ALKALFGIALYPLNRY 171
+ + A +I ++ R V D A L ++ R
Sbjct: 119 ELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQ 178
Query: 172 QVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLG 231
+ G+ V A D +V + +
Sbjct: 179 TMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA- 237
Query: 232 TGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALL 291
++++ N + + G + + + + + L+
Sbjct: 238 --RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIR---TYLNLM 292
Query: 292 K 292
Sbjct: 293 G 293
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 2e-07
Identities = 45/282 (15%), Positives = 94/282 (33%), Gaps = 39/282 (13%)
Query: 3 VKRRTVRSLVTKLG-SVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEIL---- 57
++ +R V+ L + + + + + L LS D +I++A +P LA+ +
Sbjct: 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADA--LPVLADRVIIPF 140
Query: 58 ------------YSSSHAFQENAAATLLNLSITS--RDSLMSTRGLLDAISHVLRHHSTS 103
NA L NLS R ++ + GL+D++ +++ +
Sbjct: 141 SGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAA 200
Query: 104 TS--SAAVQSSAATLHSL------LVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSV-K 154
+ +V++ LH+L V YR + R+ N + +
Sbjct: 201 SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNN 260
Query: 155 DALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGC------ 208
+ L P + ++ +L+ + +E + + +
Sbjct: 261 NYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320
Query: 209 EESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLV 250
S K G+ + LL G V + S L N+
Sbjct: 321 GMSQLIGLKEKGLPQIARLLQSGN---SDVVRSGASLLSNMS 359
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 49.4 bits (117), Expect = 7e-07
Identities = 25/157 (15%), Positives = 59/157 (37%), Gaps = 7/157 (4%)
Query: 16 GSVSEQTRAEALAELRLLSKH----DAEIRPMISEAGSIPYLAEILYSSSHAFQENAAAT 71
A A A L + + + + +P +A +L S + + A+
Sbjct: 295 SKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASL 354
Query: 72 LLNLSITSRD-SLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAA-TLHSLLVVDSYRPII 129
L N+S +M + + + H +++S + SSA T+ +L+
Sbjct: 355 LSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQ 414
Query: 130 GAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALY 166
+++++I + ++ SP ++ + A L +
Sbjct: 415 YFSSSMLNNIINLCRSSASP-KAAEAARLLLSDMWSS 450
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 46.7 bits (110), Expect = 5e-06
Identities = 30/254 (11%), Positives = 77/254 (30%), Gaps = 27/254 (10%)
Query: 47 AGSIPYLAEILYSSSHAFQENAAATLLNLSITSRD--SLMSTRGLLDAISHVLRHHSTST 104
+IP + L S +Q A + + + G + + +LR + +
Sbjct: 1 GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNV 60
Query: 105 SSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIA 164
AA A L +L+ + + +++ I + ++ R + ++ L L
Sbjct: 61 QQAA----AGALRNLVFRSTTNKLETRRQNGIREAVSLL--RRTGNAEIQKQLTGLLWNL 114
Query: 165 LYPLNRYQVIALGGVQPLFSLVVNGGRAG---------------IVEDASAVIAQIAGCE 209
+ + + L V+ + +A+ + ++ +
Sbjct: 115 SSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSAD 174
Query: 210 ESVDEFKKCCG-IGVLVDLLDLGTGSGH---RVKENAVSALLNLVNFGGERAAEEVKEMA 265
+ G I L+ + + + EN + L NL +++
Sbjct: 175 AGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLE 234
Query: 266 MQVADGIADVAQNG 279
+ + + G
Sbjct: 235 YNARNAYTEKSSTG 248
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 44.4 bits (104), Expect = 3e-05
Identities = 25/181 (13%), Positives = 59/181 (32%), Gaps = 7/181 (3%)
Query: 37 DAEIRPMISEAGSIPYLAEILYSSSH-AFQENAAATLLNLSITSRDSLMSTRGLLDAISH 95
+ + + + +I ++ S A E A L NL+ + L+
Sbjct: 272 NPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEK 331
Query: 96 VLRH---HSTSTSSAAVQSSAATLHSLLVVDSYRPIIG--AKRDIIHSLIEIIKTRNSPL 150
L S +S V+S A+ L ++ ++G ++ L ++
Sbjct: 332 GLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSE 391
Query: 151 RSVKDALKALFGIALY-PLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCE 209
+ A + + P Q + + + +L + E A +++ + +
Sbjct: 392 DILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK 451
Query: 210 E 210
E
Sbjct: 452 E 452
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 75.8 bits (185), Expect = 2e-15
Identities = 48/343 (13%), Positives = 97/343 (28%), Gaps = 58/343 (16%)
Query: 7 TVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQE 66
+ ++ LG + ++ A A L+ L + +++ + + IP L +L
Sbjct: 49 ELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHL 108
Query: 67 NAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYR 126
A L N+S D + ++R + + TL +L DS +
Sbjct: 109 GACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIK 168
Query: 127 PIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIAL---------- 176
I +H+L + + +S + I + L
Sbjct: 169 MEIV--DHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEA 226
Query: 177 --------GGVQPLFSLVVNGGRAG-----IVEDASAVIAQIAGCEESVDEFK------- 216
G V L +V +VE+ ++ ++
Sbjct: 227 RRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAA 286
Query: 217 -------------------KCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERA 257
+ + + + LL + E + A+ NL G
Sbjct: 287 PNVANNTGTSPARGYELLFQPEVVRIYISLLK--ESKTPAILEASAGAIQNLCA--GRWT 342
Query: 258 AEEVKEMAMQVADGI---ADVAQNGSAKGKTKAVALLKILVDD 297
A++ + AD+ N + A L+ L D
Sbjct: 343 YGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVD 385
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 62.3 bits (150), Expect = 6e-11
Identities = 50/364 (13%), Positives = 105/364 (28%), Gaps = 59/364 (16%)
Query: 8 VRSLVTKLGSVSEQTRAEALAELRLLS-KHDAEIRPMISEAGSIPYLAEILYSS-SHAFQ 65
+ LV L ++ A L+ +S D + + I +P L +L +
Sbjct: 92 IPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLT 151
Query: 66 ENAAATLLNLSITSRD-SLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVV-- 122
E TL NLS + L V+ HS + V+
Sbjct: 152 EVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTN 211
Query: 123 ------------DSYRPIIGAKRDIIHSLIEIIKT----RNSPLRSVKDALKALFGIAL- 165
R + ++ +LI I++ ++S + V++ + L ++
Sbjct: 212 TAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQ 271
Query: 166 -------------------------YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASA 200
+ V+ SL+ I+E ++
Sbjct: 272 VHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAG 331
Query: 201 VIAQIAGCEESVDE-----FKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFG-- 253
I + + ++ + + DLL RV + A AL NL
Sbjct: 332 AIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEH---ERVVKAASGALRNLAVDARN 388
Query: 254 -GERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDDGNMNI-TMTNEEILK 311
+ + + G + + N S + + ++ + + + ++
Sbjct: 389 KELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIE 448
Query: 312 KLKN 315
KL
Sbjct: 449 KLVL 452
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 58.0 bits (139), Expect = 1e-09
Identities = 33/200 (16%), Positives = 75/200 (37%), Gaps = 9/200 (4%)
Query: 1 MEVKRRTVRSLVTKL-GSVSEQTRAEALAELRLLSKHD----AEIRPMISEAGSIPYLAE 55
+ + VR ++ L S + + ++ L IR + + ++ +A+
Sbjct: 303 LLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIAD 362
Query: 56 ILYSSSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTST----SSAAVQS 111
+L + + A+ L NL++ +R+ + + + + L ++ S V S
Sbjct: 363 LLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVIS 422
Query: 112 SAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRY 171
T++ ++ + + I L+ I K+ N + V+ A L I Y R
Sbjct: 423 ILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRK 482
Query: 172 QVIALGGVQPLFSLVVNGGR 191
+ G + F + +N
Sbjct: 483 PLEKEGWKKSDFQVNLNNAS 502
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 51.1 bits (121), Expect = 2e-07
Identities = 41/297 (13%), Positives = 87/297 (29%), Gaps = 31/297 (10%)
Query: 25 EALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLM 84
E + L S P +P + +L A + NAAA L +L +
Sbjct: 25 ERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKT 84
Query: 85 STR--GLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYR-PIIGAKRDIIHSLIE 141
R + + +L H A L ++ I D + +L+
Sbjct: 85 DVRKLKGIPVLVGLLDHPKKEVHLGA----CGALKNISFGRDQDNKIAIKNCDGVPALVR 140
Query: 142 IIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASA- 200
+++ + L+ ++ + + +++ + L V+ E
Sbjct: 141 LLRKARDM-DLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDC 198
Query: 201 ---------VIAQIAGC--------EESVDEFKKCCG-IGVLVDLLDLGTGSGH---RVK 239
V+ AGC E+ + ++C G + L+ ++ G ++
Sbjct: 199 KPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLV 258
Query: 240 ENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVD 296
EN V L NL + + +++I +
Sbjct: 259 ENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYIS 315
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 66.9 bits (163), Expect = 4e-13
Identities = 37/249 (14%), Positives = 77/249 (30%), Gaps = 36/249 (14%)
Query: 7 TVRSLVTKLGS--VSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAF 64
T+ V+ L + + + A ++ +E R +++ I L ++L +
Sbjct: 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDV 68
Query: 65 QENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDS 124
Q L NL D+ + L+ + +L+ + + L +L D
Sbjct: 69 QRAVCGALRNLVFEDNDNKLEVAE-LNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK 127
Query: 125 YRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFS 184
+ ++ + +AL L + P + + L
Sbjct: 128 LKNLM-----------------------ITEALLTLTENIIIPFSGWPEGDYPKANGLLD 164
Query: 185 LVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCG-IGVLVDLLDLGTGSGH---RVKE 240
+ G + + S + + ++C G I LV + + E
Sbjct: 165 FDIFYNVTGCLRNMS------SAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATE 218
Query: 241 NAVSALLNL 249
N V L NL
Sbjct: 219 NCVCILHNL 227
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 57.9 bits (139), Expect = 1e-09
Identities = 42/335 (12%), Positives = 103/335 (30%), Gaps = 36/335 (10%)
Query: 2 EVKRRTVRSLVTKLGSVSEQTRAEALAELRLLSK-------------HDAEIRPMISEAG 48
V + V + +Q + EL +K + +++ G
Sbjct: 436 SCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEG 495
Query: 49 SIPYLAEILYSSSHAFQENAAATLLNLSITS--RDSLMSTRGLLDAISHVLRHHSTSTSS 106
L + + SH QE A L + R ++ G+ L + +
Sbjct: 496 ITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVK-----ALLRMALEGTE 550
Query: 107 AAVQSSAATLHSLLVVDSYRPIIGAKRDI--IHSLIEIIKTRNSPLRSVKDALKALFGIA 164
+ + L + + + +R + I L+ +++ + L ++L AL +A
Sbjct: 551 KGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALE-NFESLMALTNLA 609
Query: 165 LYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEF-KKCCGIGV 223
+ Q I + + A+ + + E+ + F +
Sbjct: 610 SMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKF 669
Query: 224 LVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADG---IADVAQNGS 280
L L + AL + + + + E + +A + + N S
Sbjct: 670 LALLCE---DEDEETATACAGALAIITSV-----SVKCCEKILAIASWLDILHTLIANPS 721
Query: 281 AKGKTKAV-ALLKILVDDGNMNITMTNEEILKKLK 314
+ + + +L ++ + + +I++ L
Sbjct: 722 PAVQHRGIVIILNMINAGEEIAKKLFETDIMELLS 756
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 6e-08
Identities = 37/335 (11%), Positives = 94/335 (28%), Gaps = 43/335 (12%)
Query: 11 LVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAA 70
++ + + ++ + E + + + + E G + L + +S + + A
Sbjct: 294 MILAMATTDDELQQRVACECLIAASSKKDKAKALCEQG-VDILKRLYHSKNDGIRVRALV 352
Query: 71 TLLNLSITSRDSLMSTRGLLDAISHVLRH-----HSTSTSSAAVQSSAATLHSLLVVDSY 125
L L A + + +A L L +
Sbjct: 353 GLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAEC 412
Query: 126 RPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLN---------------- 169
+ + + IH+L+++ + N + + +
Sbjct: 413 KEKLIEDKASIHALMDLARGGNQSC--LYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQ 470
Query: 170 ----------------RYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVD 213
R V+A G+ + E + V+ + G +E
Sbjct: 471 HIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRG 530
Query: 214 EFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIA 273
+ + G+ L+ + GT + K +A AL + + + + +
Sbjct: 531 KVVQEGGVKALLRMALEGT---EKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLN 587
Query: 274 DVAQNGSAKGKTKAVALLKILVDDGNMNITMTNEE 308
+ Q+ +A +++ L L +E
Sbjct: 588 LLQQDCTALENFESLMALTNLASMNESVRQRIIKE 622
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 3e-06
Identities = 30/262 (11%), Positives = 70/262 (26%), Gaps = 49/262 (18%)
Query: 2 EVKRRTVRSLVTKLGS-VSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSS 60
+ +R L+ L + E+L L L+ + +R I + + + L
Sbjct: 576 QRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED 635
Query: 61 SHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLL 120
AA L NL ++
Sbjct: 636 HLYLTRAAAQCLCNLVMS------------------------------------------ 653
Query: 121 VVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQ-VIALGGV 179
+ + D + L + + + AL I + + ++A+
Sbjct: 654 --EDVIKMFEGNNDRVKFLALLCEDEDEETA--TACAGALAIITSVSVKCCEKILAIASW 709
Query: 180 QPLFSLVVNGGRAGIVEDASAVIAQI-AGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRV 238
+ ++ + +I + EE + + + +L L L + +
Sbjct: 710 LDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKA 769
Query: 239 KENAVSALLNLVNFGGERAAEE 260
+E A L + ++
Sbjct: 770 REVATQCLAAAERYRIIERSDN 791
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 2e-06
Identities = 14/93 (15%), Positives = 33/93 (35%)
Query: 8 VRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQEN 67
L+ + ++ + ++ L+ L E + + G + L ++ + F E+
Sbjct: 169 FSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEH 228
Query: 68 AAATLLNLSITSRDSLMSTRGLLDAISHVLRHH 100
L +L + R + +LRH
Sbjct: 229 VLGALCSLVTDFPQGVRECREPELGLEELLRHR 261
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 2e-06
Identities = 26/141 (18%), Positives = 50/141 (35%), Gaps = 6/141 (4%)
Query: 169 NRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESV-DEFKKCCGIGVLVDL 227
N L G+ L + G AG+ A+ +I + ++ ++ + L+ L
Sbjct: 73 NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132
Query: 228 LDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKA 287
LD + V+ A+ A+ LV + ++ V + Q K K K+
Sbjct: 133 LD--RDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSV---LMRAMQQQVQKLKVKS 187
Query: 288 VALLKILVDDGNMNITMTNEE 308
LL+ L+ +
Sbjct: 188 AFLLQNLLVGHPEHKGTLCSM 208
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 40.0 bits (93), Expect = 5e-04
Identities = 35/222 (15%), Positives = 69/222 (31%), Gaps = 14/222 (6%)
Query: 46 EAGSIPYLAEILYSSSHAFQENAAATLLNL--SITSRDSLMSTRGLLDAISHVLRHHSTS 103
P E ++ +E A L +L ++ + G+ + L
Sbjct: 38 SQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEA---- 93
Query: 104 TSSAAVQSSAA-TLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFG 162
+A ++ AA + + + + L+ ++ VK AL A+
Sbjct: 94 -GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVK-ALFAISC 151
Query: 163 IAL-YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGI 221
+ Q + L G L + + V+ A + + G E +
Sbjct: 152 LVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMV 211
Query: 222 GVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKE 263
LV L+ E+ + AL +LV + E +E
Sbjct: 212 QQLVALVRTEHSP---FHEHVLGALCSLVT-DFPQGVRECRE 249
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 1e-05
Identities = 55/409 (13%), Positives = 113/409 (27%), Gaps = 140/409 (34%)
Query: 9 RSLVTK------LGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSH 62
+S+++K + S + L LLSK + ++ + E I Y + L S
Sbjct: 43 KSILSKEEIDHIIMSKDAVSGTLRLFWT-LLSKQEEMVQKFVEEVLRINY--KFLMSPIK 99
Query: 63 AFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQS----SAATLH- 117
++ + + + I RD L + + +V R A+ +
Sbjct: 100 T-EQRQPSMMTRMYIEQRDRLYNDNQVFAKY-NVSRLQPYLKLRQALLELRPAKNVLIDG 157
Query: 118 ------SLLVVDSYR----------PI----IGAKRDIIHSLIEIIKT------------ 145
+ + +D I + + +++E+++
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK-NCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 146 ----RNSPLR--SVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDAS 199
N LR S++ L+ L Y L LV+ V++A
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYE------NCL--------LVLLN-----VQNA- 256
Query: 200 AVIAQIAGCEESVDEFKKCCGIGV------LVDLLDLGTGSGHRV--------KENAVSA 245
++ + F C I + + D L T + + + S
Sbjct: 257 ----------KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 246 LLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSA----------KGKTKAVAL----- 290
LL ++ + EV + IA+ ++G A T +
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366
Query: 291 -----------LKILVDDGNMNITM-------------TNEEILKKLKN 315
L + +I ++ KL
Sbjct: 367 EPAEYRKMFDRLSVFPPS--AHIPTILLSLIWFDVIKSDVMVVVNKLHK 413
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 315 | |||
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 100.0 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 100.0 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 100.0 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 100.0 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 100.0 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 100.0 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 100.0 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 100.0 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 100.0 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 99.98 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 99.98 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 99.97 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 99.97 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 99.97 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.97 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.96 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.96 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 99.96 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.96 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.96 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 99.96 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.96 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 99.96 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.95 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.95 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.95 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 99.95 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.95 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 99.94 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 99.93 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.93 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.92 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 99.92 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 99.92 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 99.91 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 99.88 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 99.86 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 99.86 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 99.58 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 99.58 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 99.46 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 99.45 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 99.41 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 99.35 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 99.32 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 99.27 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 99.25 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 99.22 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 99.16 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 99.16 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 99.16 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 99.11 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 99.1 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 99.08 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 99.01 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 98.92 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 98.85 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 98.84 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 98.82 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 98.78 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 98.78 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 98.77 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 98.63 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 98.5 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 98.47 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 98.46 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 98.45 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 98.41 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 98.39 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 98.27 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 98.17 | |
| 1ho8_A | 480 | Vacuolar ATP synthase subunit H; heat repeat, hydr | 98.17 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 97.94 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 97.91 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 97.79 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 97.78 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 97.78 | |
| 3dad_A | 339 | FH1/FH2 domain-containing protein 1; formin, FHOD1 | 97.71 | |
| 3dad_A | 339 | FH1/FH2 domain-containing protein 1; formin, FHOD1 | 97.7 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 97.64 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 97.54 | |
| 1ho8_A | 480 | Vacuolar ATP synthase subunit H; heat repeat, hydr | 97.53 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 97.52 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 97.37 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 97.2 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 97.03 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 96.97 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 96.33 | |
| 2fv2_A | 268 | RCD1 required for cell differentiation1 homolog; a | 95.91 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 95.9 | |
| 2fv2_A | 268 | RCD1 required for cell differentiation1 homolog; a | 95.84 | |
| 3ebb_A | 304 | Phospholipase A2-activating protein; armadillo rep | 95.5 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 95.43 | |
| 1upk_A | 341 | MO25 protein; transferase, armadillo; HET: MSE; 1. | 95.2 | |
| 3ebb_A | 304 | Phospholipase A2-activating protein; armadillo rep | 94.83 | |
| 1upk_A | 341 | MO25 protein; transferase, armadillo; HET: MSE; 1. | 94.81 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 94.63 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 94.41 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 94.33 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 94.23 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 93.76 | |
| 3c2g_A | 619 | SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev | 93.52 | |
| 2f31_A | 233 | Diaphanous protein homolog 1; formin,MDIA1, protei | 93.24 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 92.41 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 92.26 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 91.6 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 91.59 | |
| 3eg5_B | 383 | Protein diaphanous homolog 1; protein-protein comp | 91.55 | |
| 2bnx_A | 386 | Diaphanous protein homolog 1; autoinhibition, acti | 91.44 | |
| 3c2g_A | 619 | SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev | 91.39 | |
| 3eg5_B | 383 | Protein diaphanous homolog 1; protein-protein comp | 89.3 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 88.8 | |
| 2f31_A | 233 | Diaphanous protein homolog 1; formin,MDIA1, protei | 88.43 | |
| 3gjx_A | 1073 | Exportin-1; transport, cytoplasm, nucleus, RNA-bin | 86.16 | |
| 1lsh_A | 1056 | Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro | 85.85 | |
| 1x5b_A | 163 | Signal transducing adaptor molecule 2; VHS domain, | 85.83 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 85.32 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 84.59 | |
| 1mhq_A | 148 | ADP-ribosylation factor binding protein GGA2; supe | 83.7 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 83.06 | |
| 1juq_A | 171 | ADP-ribosylation factor binding protein GGA3; prot | 82.26 | |
| 2bnx_A | 386 | Diaphanous protein homolog 1; autoinhibition, acti | 82.03 | |
| 1vdy_A | 140 | Hypothetical protein (RAFL09-17-B18); structural g | 81.82 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 81.78 | |
| 3ldz_A | 140 | STAM-1, signal transducing adapter molecule 1; ubi | 81.26 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 80.77 | |
| 3ldz_A | 140 | STAM-1, signal transducing adapter molecule 1; ubi | 80.73 |
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-35 Score=268.43 Aligned_cols=271 Identities=18% Similarity=0.215 Sum_probs=231.5
Q ss_pred HHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcC-----------CCHHHHHHHHHHHHhcCcccc-hh-hhh-h
Q 021242 21 QTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYS-----------SSHAFQENAAATLLNLSITSR-DS-LMS-T 86 (315)
Q Consensus 21 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~-----------~~~~~~~~a~~~L~~la~~~~-~~-~i~-~ 86 (315)
..+..|+++|.+++.+ +++|+.|++.|++++|+.+|.+ .++.+|+.|+++|.|++.+++ ++ .+. .
T Consensus 47 ~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 5667999999999976 7999999999999999999952 236799999999999998874 44 443 4
Q ss_pred cCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcC--CCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhc
Q 021242 87 RGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVV--DSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIA 164 (315)
Q Consensus 87 ~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~--~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls 164 (315)
.|++|.|+++|++ +++++++.++++|+||+.. +++|..+.+.|+ ||+|+.+|.. .+++.+++.|+++|+||+
T Consensus 126 ~GaIp~LV~LL~s----~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~-Ip~Lv~lL~~-~~~~~~~~~A~~aL~nLs 199 (354)
T 3nmw_A 126 KGCMRALVAQLKS----ESEDLQQVIASVLRNLSWRADVNSKKTLREVGS-VKALMECALE-VKKESTLKSVLSALWNLS 199 (354)
T ss_dssp HHHHHHHHHGGGC----SCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTH-HHHHHHHHHH-CCCHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHCC----CCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCC-HHHHHHHHhc-CCCHHHHHHHHHHHHHHH
Confidence 4559999999997 7899999999999999974 467888888655 9999998643 467899999999999999
Q ss_pred c-CCCcHHHHH-hhCCcHHHHHHHhcCCCc---chHHHHHHHHHHHhc----ChhhHHHHHhcCCHHHHHHHhhcCCCCC
Q 021242 165 L-YPLNRYQVI-ALGGVQPLFSLVVNGGRA---GIVEDASAVIAQIAG----CEESVDEFKKCCGIGVLVDLLDLGTGSG 235 (315)
Q Consensus 165 ~-~~~~~~~i~-~~g~v~~L~~lL~~~~~~---~~~~~a~~~L~~L~~----~~~~~~~i~~~~~i~~Lv~ll~~~~~~~ 235 (315)
. .++++..++ ..|+++.|+++|.+..+. .+++.|+++|+||+. ++++++.+.+.|+++.|+.+|+++ +
T Consensus 200 ~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~---~ 276 (354)
T 3nmw_A 200 AHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH---S 276 (354)
T ss_dssp TTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS---C
T ss_pred ccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC---C
Confidence 9 668888887 689999999999643222 488999999999985 899999999999999999999986 8
Q ss_pred hhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhCCCCCCcc
Q 021242 236 HRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDDGNMNITM 304 (315)
Q Consensus 236 ~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~~~~~i~~ 304 (315)
..++++|+++|++++.. .++.++.+++ .|+++.|+.+++++++++|+.|+++|.+|...+...+-.
T Consensus 277 ~~v~~~A~~aL~nLa~~-~~~~~~~i~~--~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~~~~ 342 (354)
T 3nmw_A 277 LTIVSNACGTLWNLSAR-NPKDQEALWD--MGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKD 342 (354)
T ss_dssp HHHHHHHHHHHHHHTSS-CHHHHHHHHH--TTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGGGC-
T ss_pred hHHHHHHHHHHHHHhCC-CHHHHHHHHH--CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHHHhh
Confidence 89999999999999863 3567788888 999999999999999999999999999999876554433
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=271.88 Aligned_cols=284 Identities=17% Similarity=0.143 Sum_probs=238.9
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcc-cc-hhh
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSIT-SR-DSL 83 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~-~~-~~~ 83 (315)
..+|.+|++|++++++.|..|+++|.+++.+++.++..+++.|+||.|+++|++.++.+++.|+++|.|++.+ ++ +..
T Consensus 2 ~~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 5799999999999999999999999999988778898999999999999999999999999999999999987 44 445
Q ss_pred hhhcCchHHHHHHHh-cCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhh--------ccC------C
Q 021242 84 MSTRGLLDAISHVLR-HHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIK--------TRN------S 148 (315)
Q Consensus 84 i~~~~~i~~L~~lL~-~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~--------~~~------~ 148 (315)
+.+.|++|.|+++|+ + +++++++.++++|+||+..++++..+.+ ++ +|.|+.++. ++. .
T Consensus 82 i~~~G~i~~Lv~lL~~~----~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~-i~~Lv~ll~~~~s~~~~~~~~~~~e~~ 155 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRT----GNAEIQKQLTGLLWNLSSTDELKEELIA-DA-LPVLADRVIIPFSGWCDGNSNMSREVV 155 (457)
T ss_dssp HHHTTCHHHHHHHHTTC----CCHHHHHHHHHHHHHHHTSSSTHHHHHH-HH-HHHHHHHTTHHHHTCC---------CC
T ss_pred HHHcCCHHHHHHHHhhC----CCHHHHHHHHHHHHHHhcCHHhHHHHHh-cc-HHHHHHHHhccccccccCccchhcccc
Confidence 679999999999998 5 6889999999999999988889998887 55 999999993 110 2
Q ss_pred ChHHHHHHHHHHHHhccCCCcHHHHHhh-CCcHHHHHHHhcC-----CCcchHHHHHHHHHHHhcCh-------------
Q 021242 149 PLRSVKDALKALFGIALYPLNRYQVIAL-GGVQPLFSLVVNG-----GRAGIVEDASAVIAQIAGCE------------- 209 (315)
Q Consensus 149 ~~~~~~~a~~aL~~Ls~~~~~~~~i~~~-g~v~~L~~lL~~~-----~~~~~~~~a~~~L~~L~~~~------------- 209 (315)
++.+...|+++|+|||.+++++..+++. |+++.|+.+|.+. ++..+.+.++++|+||+...
T Consensus 156 ~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~ 235 (457)
T 1xm9_A 156 DPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEY 235 (457)
T ss_dssp CHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccc
Confidence 4567779999999999998889999997 9999999999731 45678899999999997321
Q ss_pred --------------------------------------hhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhc
Q 021242 210 --------------------------------------ESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVN 251 (315)
Q Consensus 210 --------------------------------------~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~ 251 (315)
.+.+.+++.++++.|+.+|... .++.+++.|+++|+|||.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~--~~~~~~e~a~~aL~nl~~ 313 (457)
T 1xm9_A 236 NARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKS--KKDATLEACAGALQNLTA 313 (457)
T ss_dssp TC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTT
T ss_pred ccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhc--CCHHHHHHHHHHHHHhcc
Confidence 1223344556689999999875 368999999999999997
Q ss_pred cCCHH---HHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhCC
Q 021242 252 FGGER---AAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDDG 298 (315)
Q Consensus 252 ~~~~~---~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~~ 298 (315)
...+. ..+.++. ..|++|.|+.+++++++++++.|+++|++++.+.
T Consensus 314 ~~~~~~~~~~~~~v~-~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~ 362 (457)
T 1xm9_A 314 SKGLMSSGMSQLIGL-KEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP 362 (457)
T ss_dssp CSSSHHHHHHHHHHT-TSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG
T ss_pred CcCcchHHHHHHHHH-HcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH
Confidence 44321 2134453 3899999999999999999999999999998753
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=269.64 Aligned_cols=281 Identities=17% Similarity=0.202 Sum_probs=237.1
Q ss_pred hhhHHHHHHHhCCCC--HH------------HHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcC-----------
Q 021242 5 RRTVRSLVTKLGSVS--EQ------------TRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYS----------- 59 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~--~~------------~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~----------- 59 (315)
+.+.+.+++++.+.. .+ .+..|+++|.+++.+ +++|+.|.+.|++++|+.+|..
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~ 211 (458)
T 3nmz_A 133 RAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDH 211 (458)
T ss_dssp HHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCH
T ss_pred hhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCC
Confidence 445567788887652 11 234999999999865 8999999999999999999952
Q ss_pred CCHHHHHHHHHHHHhcCcccc-hh-hhh-hcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcC--CCchhhhhhccc
Q 021242 60 SSHAFQENAAATLLNLSITSR-DS-LMS-TRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVV--DSYRPIIGAKRD 134 (315)
Q Consensus 60 ~~~~~~~~a~~~L~~la~~~~-~~-~i~-~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~--~~~~~~i~~~~g 134 (315)
.++.+++.|+++|.|++.+++ ++ .+. ..|++|.|+++|++ ++++++..++++|+||+.. ++++..+.+.||
T Consensus 212 ~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s----~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~Ga 287 (458)
T 3nmz_A 212 YSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKS----ESEDLQQVIASVLRNLSWRADVNSKKTLREVGS 287 (458)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGC----SCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTH
T ss_pred CCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhC----CCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCC
Confidence 236789999999999999875 44 443 45569999999997 7899999999999999974 457888888655
Q ss_pred cHHHHHHHhhccCCChHHHHHHHHHHHHhcc-CCCcHHHHH-hhCCcHHHHHHHhcCCCc---chHHHHHHHHHHHhc--
Q 021242 135 IIHSLIEIIKTRNSPLRSVKDALKALFGIAL-YPLNRYQVI-ALGGVQPLFSLVVNGGRA---GIVEDASAVIAQIAG-- 207 (315)
Q Consensus 135 ~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~-~~g~v~~L~~lL~~~~~~---~~~~~a~~~L~~L~~-- 207 (315)
||+|+.+|.. .+++.+++.|+++|+||+. .++++..++ ..|+++.|+++|.+..+. .+++.|+++|+||+.
T Consensus 288 -I~~LV~lLl~-s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~ 365 (458)
T 3nmz_A 288 -VKALMECALE-VKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI 365 (458)
T ss_dssp -HHHHHHHHTT-CCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHhc-CCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcc
Confidence 9999998653 4678899999999999999 778898888 689999999999643222 378999999999984
Q ss_pred --ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHH
Q 021242 208 --CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKT 285 (315)
Q Consensus 208 --~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~ 285 (315)
.+++++.+.+.|+++.|+.+|+++ +..++++|+++|+|++.. .++.+..+++ .|+++.|+.+++++++++++
T Consensus 366 a~~~~~~~~i~~~G~i~~Lv~LL~~~---~~~v~~~A~~aL~nLa~~-~~~~~~~i~~--~G~I~~Lv~LL~s~~~~v~~ 439 (458)
T 3nmz_A 366 ATNEDHRQILRENNCLQTLLQHLKSH---SLTIVSNACGTLWNLSAR-NPKDQEALWD--MGAVSMLKNLIHSKHKMIAM 439 (458)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHSSCS---CHHHHHHHHHHHHHHHSS-CHHHHHHHHH--HTHHHHHHTTTTCSSHHHHH
T ss_pred cCCHHHHHHHHHcccHHHHHHHHcCC---ChHHHHHHHHHHHHHHcC-CHHHHHHHHH--CCCHHHHHHHHhCCCHHHHH
Confidence 889999999999999999999987 889999999999999863 3567788888 99999999999999999999
Q ss_pred HHHHHHHHHhhCC
Q 021242 286 KAVALLKILVDDG 298 (315)
Q Consensus 286 ~A~~~L~~l~~~~ 298 (315)
.|+++|.+|...+
T Consensus 440 ~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 440 GSAAALRNLMANR 452 (458)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCC
Confidence 9999999998654
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=270.51 Aligned_cols=289 Identities=17% Similarity=0.171 Sum_probs=238.0
Q ss_pred hhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcc--cc-
Q 021242 4 KRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSIT--SR- 80 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~--~~- 80 (315)
....|+.||++|.+++++.|..|+++|.+++..++++|..+++.|+||+|+.+|++.++++|+.|+++|+||+.+ ++
T Consensus 46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp CCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHH
T ss_pred ccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHH
Confidence 346799999999999999999999999999988889999999999999999999999999999999999999985 33
Q ss_pred hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhc---------------
Q 021242 81 DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKT--------------- 145 (315)
Q Consensus 81 ~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~--------------- 145 (315)
+..+.+.|+|+.|+.+|++ ..+.++++.++++|++|+..++++..|.. +| +|.|++++..
T Consensus 126 k~~I~~~GaIp~LV~LL~s---~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~a-lp~Lv~LL~~p~sg~~~~~~~~~k~ 200 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRK---ARDMDLTEVITGTLWNLSSHDSIKMEIVD-HA-LHALTDEVIIPHSGWEREPNEDCKP 200 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHH---CCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HT-HHHHHHHTHHHHHCCC---------
T ss_pred HHHHHHcCCHHHHHHHHcC---CCCHHHHHHHHHHHHHHhCCchhhHHHHh-cc-HHHHHHHHhcccccccccccccccc
Confidence 4567799999999999996 25678999999999999998999999985 56 9999998721
Q ss_pred -cCCChHHHHHHHHHHHHhccCCC-cHHHHHhh-CCcHHHHHHHhcC-----CCcchHHHHHHHHHHHhcChh-------
Q 021242 146 -RNSPLRSVKDALKALFGIALYPL-NRYQVIAL-GGVQPLFSLVVNG-----GRAGIVEDASAVIAQIAGCEE------- 210 (315)
Q Consensus 146 -~~~~~~~~~~a~~aL~~Ls~~~~-~~~~i~~~-g~v~~L~~lL~~~-----~~~~~~~~a~~~L~~L~~~~~------- 210 (315)
+..++.++.+|+++|.||+.+.+ +|..+++. |+++.|+.++.+. ++...++.|+++|+|||...+
T Consensus 201 ~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~ 280 (584)
T 3l6x_A 201 RHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAE 280 (584)
T ss_dssp -CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCC
T ss_pred cccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchh
Confidence 02357899999999999999764 58888885 6678999999632 455788999999999987521
Q ss_pred -------------------hHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCH--HHHHHHHHHccCcH
Q 021242 211 -------------------SVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGE--RAAEEVKEMAMQVA 269 (315)
Q Consensus 211 -------------------~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~i~~~~~g~~ 269 (315)
+.+.+++.++++.|+.+|+.+ .+..++++|+++|++||.+... ...+.+++ ..|++
T Consensus 281 ~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s--~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~-~~~gl 357 (584)
T 3l6x_A 281 RYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKES--KTPAILEASAGAIQNLCAGRWTYGRYIRSALR-QEKAL 357 (584)
T ss_dssp C--------------CCCCGGGGGGSHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHT-SHHHH
T ss_pred hhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccC--CCHHHHHHHHHHHHHHHcCCccccHHHHHHHH-HcCcH
Confidence 111222233467889999764 3789999999999999875422 12233443 37899
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHhhCCCC
Q 021242 270 DGIADVAQNGSAKGKTKAVALLKILVDDGNM 300 (315)
Q Consensus 270 ~~L~~ll~~~~~~~k~~A~~~L~~l~~~~~~ 300 (315)
|.|+.|+.++++.+++.|+++|++|+.+...
T Consensus 358 p~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~ 388 (584)
T 3l6x_A 358 SAIADLLTNEHERVVKAASGALRNLAVDARN 388 (584)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCChhH
Confidence 9999999999999999999999999987553
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-33 Score=259.43 Aligned_cols=289 Identities=15% Similarity=0.148 Sum_probs=238.3
Q ss_pred hhhhHHHHHHHhCCC------------CHHHHHHHHHHHHHHhccCchhhHHHHhCCCH----------HHHHHHHcCCC
Q 021242 4 KRRTVRSLVTKLGSV------------SEQTRAEALAELRLLSKHDAEIRPMISEAGSI----------PYLAEILYSSS 61 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~------------~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i----------~~Lv~lL~~~~ 61 (315)
+.+.+|.||++|+.. +++.|.+|+++|.+++..+++......+.|++ +.+++++.+..
T Consensus 68 ~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 147 (458)
T 3nmz_A 68 QSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHE 147 (458)
T ss_dssp HHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhc
Confidence 567899999999863 37999999999999999888888888888888 77777776542
Q ss_pred --HH-----HHH-------HHHHHHHhcCcccc-hhhhhhcCchHHHHHHHhcC-----C--CCCCHHHHHHHHHHHHHh
Q 021242 62 --HA-----FQE-------NAAATLLNLSITSR-DSLMSTRGLLDAISHVLRHH-----S--TSTSSAAVQSSAATLHSL 119 (315)
Q Consensus 62 --~~-----~~~-------~a~~~L~~la~~~~-~~~i~~~~~i~~L~~lL~~~-----~--~~~~~~~~~~a~~~L~~L 119 (315)
.+ +++ .|+++|.|++.+++ +..+.+.|+++.|+.+|... . ...++.++..|+++|.||
T Consensus 148 ~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nL 227 (458)
T 3nmz_A 148 PGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNL 227 (458)
T ss_dssp SSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred cccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHH
Confidence 11 333 89999999998876 56778999999999999520 0 002456889999999999
Q ss_pred hcCCC-chhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccC--CCcHHHHHhhCCcHHHHHHHhcCCCcchHH
Q 021242 120 LVVDS-YRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALY--PLNRYQVIALGGVQPLFSLVVNGGRAGIVE 196 (315)
Q Consensus 120 s~~~~-~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~--~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~ 196 (315)
+..++ ++..+...+|+||.|+.+|. .++++++..|+++|+||+.. ++++..+++.|++|.|+++|.+.++..+++
T Consensus 228 a~~~~~~k~~i~~~~GaIp~LV~LL~--s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~ 305 (458)
T 3nmz_A 228 TFGDVANKATLCSMKGCMRALVAQLK--SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLK 305 (458)
T ss_dssp HTTCHHHHHHHHHCHHHHHHHHHGGG--CSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHH
T ss_pred hCCCcccHHHHHHcCCcHHHHHHHHh--CCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHH
Confidence 97654 67777655688999999999 56899999999999999984 468889999999999999875445678899
Q ss_pred HHHHHHHHHhc-ChhhHHHHH-hcCCHHHHHHHhhcCCCC-ChhHHHHHHHHHHHHhcc--CCHHHHHHHHHHccCcHHH
Q 021242 197 DASAVIAQIAG-CEESVDEFK-KCCGIGVLVDLLDLGTGS-GHRVKENAVSALLNLVNF--GGERAAEEVKEMAMQVADG 271 (315)
Q Consensus 197 ~a~~~L~~L~~-~~~~~~~i~-~~~~i~~Lv~ll~~~~~~-~~~~~~~a~~~L~~l~~~--~~~~~~~~i~~~~~g~~~~ 271 (315)
.++++|.||+. +++++..+. ..|+++.|+++|..+... ...+++.++++|++|+.. +.++.++.+++ .|+++.
T Consensus 306 ~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~--~G~i~~ 383 (458)
T 3nmz_A 306 SVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE--NNCLQT 383 (458)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHH--TTHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHH--cccHHH
Confidence 99999999999 888898888 678899999999875110 115899999999999851 34567788887 999999
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHhh
Q 021242 272 IADVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 272 L~~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
|+.++.++++.++++|+++|.+++.
T Consensus 384 Lv~LL~~~~~~v~~~A~~aL~nLa~ 408 (458)
T 3nmz_A 384 LLQHLKSHSLTIVSNACGTLWNLSA 408 (458)
T ss_dssp HHHHSSCSCHHHHHHHHHHHHHHHS
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHc
Confidence 9999999999999999999999984
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-32 Score=257.38 Aligned_cols=286 Identities=18% Similarity=0.207 Sum_probs=244.6
Q ss_pred hhhhHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc--
Q 021242 4 KRRTVRSLVTKLGSV-SEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR-- 80 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~-- 80 (315)
+.+.||.||++|+++ ++++|..|+++|.+++..++++++.+++.|+||.|+.+|+++++++++.|+++|+|++.+..
T Consensus 98 ~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~ 177 (510)
T 3ul1_B 98 RAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177 (510)
T ss_dssp HTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 346799999999755 58999999999999998889999999999999999999999999999999999999998764
Q ss_pred hhhhhhcCchHHHHHHHhcCCC-CCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHH
Q 021242 81 DSLMSTRGLLDAISHVLRHHST-STSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKA 159 (315)
Q Consensus 81 ~~~i~~~~~i~~L~~lL~~~~~-~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~a 159 (315)
+..+.+.|+++.|+.++.++.. .........++++|.+++........+....+++|.|+.++. +.+++++..|+++
T Consensus 178 r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~--~~~~~v~~~A~~a 255 (510)
T 3ul1_B 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH--HNDPEVLADSCWA 255 (510)
T ss_dssp HHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTT--CSCHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHh--cCCHHHHHHHHHH
Confidence 5567799999999999985321 123456778999999999866555444443567999999999 5689999999999
Q ss_pred HHHhccCCCcH-HHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChh
Q 021242 160 LFGIALYPLNR-YQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHR 237 (315)
Q Consensus 160 L~~Ls~~~~~~-~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~ 237 (315)
|.+|+.+++.+ ..+++.|+++.|+++|. +++..++..++++|.|++. .+..+..+.+.|+++.|+.++.++ +..
T Consensus 256 L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~---~~~ 331 (510)
T 3ul1_B 256 ISYLTDGPNERIEMVVKKGVVPQLVKLLG-ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP---KTN 331 (510)
T ss_dssp HHHHTSSCHHHHHHHHTTTCHHHHHHHHT-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS---SHH
T ss_pred HHHHhhchhhhHHHHHhcccchhhhhhhc-CCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC---CHH
Confidence 99999977655 45667899999999996 5678899999999999976 577888889999999999999976 889
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhCC
Q 021242 238 VKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDDG 298 (315)
Q Consensus 238 ~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~~ 298 (315)
+++.++++|.||+... +..+..+.+ .|+++.|+.+++++++.+|+.|+++|.++....
T Consensus 332 v~~~A~~aL~nl~a~~-~~~~~~v~~--~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~ 389 (510)
T 3ul1_B 332 IQKEATWTMSNITAGR-QDQIQQVVN--HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGG 389 (510)
T ss_dssp HHHHHHHHHHHHTTSC-HHHHHHHHH--TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCc-HHHHHHHHh--cCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccC
Confidence 9999999999998744 456677877 899999999999999999999999999997644
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=252.54 Aligned_cols=291 Identities=15% Similarity=0.157 Sum_probs=236.6
Q ss_pred hhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHc-CCCHHHHHHHHHHHHhcCcccc-h
Q 021242 4 KRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILY-SSSHAFQENAAATLLNLSITSR-D 81 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~la~~~~-~ 81 (315)
+.+.||.||++|++++++.|..|+++|++++.+++++|..+++.|+||+|+++|+ +.++++++.|+++|+|++.+++ +
T Consensus 42 ~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~ 121 (457)
T 1xm9_A 42 QLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK 121 (457)
T ss_dssp HTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhH
Confidence 4578999999999999999999999999999887899999999999999999998 7899999999999999999865 4
Q ss_pred hhhhhcCchHHHHHHHh--------cCCCC----CCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhcc---
Q 021242 82 SLMSTRGLLDAISHVLR--------HHSTS----TSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTR--- 146 (315)
Q Consensus 82 ~~i~~~~~i~~L~~lL~--------~~~~~----~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~--- 146 (315)
..+.+ |++|.|+++|. ++... .++++...|+++|+||+..++++..+.+..|+++.|+.++.+.
T Consensus 122 ~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~ 200 (457)
T 1xm9_A 122 EELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAA 200 (457)
T ss_dssp HHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccc
Confidence 44557 99999999993 21000 2355666999999999987788888887635589999888630
Q ss_pred --------------------------------------------------------------------------------
Q 021242 147 -------------------------------------------------------------------------------- 146 (315)
Q Consensus 147 -------------------------------------------------------------------------------- 146 (315)
T Consensus 201 ~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 280 (457)
T 1xm9_A 201 SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLY 280 (457)
T ss_dssp TCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGG
T ss_pred cCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHh
Confidence
Q ss_pred --------------CCChHHHHHHHHHHHHhccCCCc------HHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHh
Q 021242 147 --------------NSPLRSVKDALKALFGIALYPLN------RYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIA 206 (315)
Q Consensus 147 --------------~~~~~~~~~a~~aL~~Ls~~~~~------~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~ 206 (315)
..++.+++.|+|+|+||+..... +..+.+.|++|.|+++|. +++..++..|+++|+||+
T Consensus 281 ~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~-~~~~~v~~~A~~aL~nls 359 (457)
T 1xm9_A 281 HSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQ-SGNSDVVRSGASLLSNMS 359 (457)
T ss_dssp SHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTT-CSCHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHh-CCCHhHHHHHHHHHHHHh
Confidence 01245566789999999985432 223336899999999996 577889999999999999
Q ss_pred cChhhHHHHHhcCCHHHHHHHhhcCCC---CChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhC-CHH
Q 021242 207 GCEESVDEFKKCCGIGVLVDLLDLGTG---SGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNG-SAK 282 (315)
Q Consensus 207 ~~~~~~~~i~~~~~i~~Lv~ll~~~~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~-~~~ 282 (315)
.++.++..+. .++++.|+++|..++. .+.++...++++|.++...+. ..+..+.+ .|++++|+.++.++ +++
T Consensus 360 ~~~~~~~~i~-~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~-~~~~~i~~--~g~l~~L~~L~~~~~~~~ 435 (457)
T 1xm9_A 360 RHPLLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQP-QLAKQYFS--SSMLNNIINLCRSSASPK 435 (457)
T ss_dssp TSGGGHHHHH-HHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCT-HHHHHHCC--HHHHHHHHHHHHCTTCHH
T ss_pred cCHHHHHHHH-HhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCH-HHHHHHHH--cCCHHHHHHHHcCCCcHH
Confidence 9888887665 5799999999987521 123677789999999987554 56677776 89999999999999 999
Q ss_pred HHHHHHHHHHHHhhCCCC
Q 021242 283 GKTKAVALLKILVDDGNM 300 (315)
Q Consensus 283 ~k~~A~~~L~~l~~~~~~ 300 (315)
++++|.++|.++-.++..
T Consensus 436 i~~~A~~~L~~~~~~~~l 453 (457)
T 1xm9_A 436 AAEAARLLLSDMWSSKEL 453 (457)
T ss_dssp HHHHHHHHHHTTSSSTTC
T ss_pred HHHHHHHHHHHHHcchhh
Confidence 999999999988655443
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-31 Score=253.14 Aligned_cols=286 Identities=18% Similarity=0.206 Sum_probs=245.5
Q ss_pred hhhhHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc--
Q 021242 4 KRRTVRSLVTKLGSV-SEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR-- 80 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~-- 80 (315)
+.+.||.||++|+.+ ++++|..|+++|.+++..++.++..+++.|+||.|+.+|.+.++++++.|+++|+|++.+..
T Consensus 117 ~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~ 196 (529)
T 3tpo_A 117 RAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAF 196 (529)
T ss_dssp HTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHH
Confidence 457899999999754 68999999999999999888899999999999999999999999999999999999998764
Q ss_pred hhhhhhcCchHHHHHHHhcCCC-CCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHH
Q 021242 81 DSLMSTRGLLDAISHVLRHHST-STSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKA 159 (315)
Q Consensus 81 ~~~i~~~~~i~~L~~lL~~~~~-~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~a 159 (315)
+..+.+.|+++.|+.+|..+.. .........++++|.+++........+....+++|.|+.++. +++++++..|+++
T Consensus 197 r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~--~~~~~v~~~a~~a 274 (529)
T 3tpo_A 197 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH--HNDPEVLADSCWA 274 (529)
T ss_dssp HHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTT--SSCHHHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhc--CCcHHHHHHHHHH
Confidence 5567799999999999975321 123456778999999999866554444433466999999999 5689999999999
Q ss_pred HHHhccCCCcH-HHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChh
Q 021242 160 LFGIALYPLNR-YQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHR 237 (315)
Q Consensus 160 L~~Ls~~~~~~-~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~ 237 (315)
|.+++.+++.+ ..+++.|+++.|+.+|. +++..++..++.+|.|++. ++..+..+.+.|+++.|+.++.++ +..
T Consensus 275 L~~l~~~~~~~~~~v~~~g~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~---~~~ 350 (529)
T 3tpo_A 275 ISYLTDGPNERIEMVVKKGVVPQLVKLLG-ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP---KTN 350 (529)
T ss_dssp HHHHHSSCHHHHHHHHTTTCHHHHHHHHT-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS---SHH
T ss_pred HHHhhhhhhhhHHHHHhccchHHHHHHhc-CCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCC---CHH
Confidence 99999977655 45668899999999996 5678899999999999976 577888899999999999999976 889
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhCC
Q 021242 238 VKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDDG 298 (315)
Q Consensus 238 ~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~~ 298 (315)
+++.|+++|.+|+... +.....+++ .|++|.|+.+++++++.+++.|+++|.++...+
T Consensus 351 i~~~a~~aL~nl~~~~-~~~~~~v~~--~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~ 408 (529)
T 3tpo_A 351 IQKEATWTMSNITAGR-QDQIQQVVN--HGLVPFLVGVLSKADFKTQKAAAWAITNYTSGG 408 (529)
T ss_dssp HHHHHHHHHHHHHTSC-HHHHHHHHH--TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhccc-HHHHHHHHh--cCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC
Confidence 9999999999999754 456677777 999999999999999999999999999997644
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-31 Score=253.99 Aligned_cols=288 Identities=16% Similarity=0.157 Sum_probs=230.7
Q ss_pred hhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhcc-CchhhHHHHhCCCHHHHHHHHcC-CCHHHHHHHHHHHHhcCcccch
Q 021242 4 KRRTVRSLVTKLGSVSEQTRAEALAELRLLSKH-DAEIRPMISEAGSIPYLAEILYS-SSHAFQENAAATLLNLSITSRD 81 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~la~~~~~ 81 (315)
..+.||.||++|+++++++|..|+++|.+++.. ++++|..|++.|+||+|+.+|++ .+.++++.|+.+|+||+.++.+
T Consensus 88 ~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~ 167 (584)
T 3l6x_A 88 KLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSI 167 (584)
T ss_dssp HTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGG
T ss_pred HcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh
Confidence 347899999999999999999999999999985 58999999999999999999997 5788999999999999998764
Q ss_pred h-hhhhcCchHHHHHHHhcCC--------------CCCCHHHHHHHHHHHHHhhcCC-CchhhhhhccccHHHHHHHhhc
Q 021242 82 S-LMSTRGLLDAISHVLRHHS--------------TSTSSAAVQSSAATLHSLLVVD-SYRPIIGAKRDIIHSLIEIIKT 145 (315)
Q Consensus 82 ~-~i~~~~~i~~L~~lL~~~~--------------~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~ll~~ 145 (315)
+ .+. .++++.|++++..+. ...+++++.+|+++|+||+... ++|..+.+++|+++.|+.+++.
T Consensus 168 k~~I~-~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~ 246 (584)
T 3l6x_A 168 KMEIV-DHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQA 246 (584)
T ss_dssp HHHHH-HHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHH
T ss_pred hHHHH-hccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHH
Confidence 4 344 468999999872100 0135788999999999999865 4588888877878888887752
Q ss_pred c------------------------------------------------------------------------CCChHHH
Q 021242 146 R------------------------------------------------------------------------NSPLRSV 153 (315)
Q Consensus 146 ~------------------------------------------------------------------------~~~~~~~ 153 (315)
+ ..++.++
T Consensus 247 ~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~ 326 (584)
T 3l6x_A 247 EIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAIL 326 (584)
T ss_dssp HHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHH
T ss_pred hhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHH
Confidence 1 0123444
Q ss_pred HHHHHHHHHhccCCC-----cHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHh
Q 021242 154 KDALKALFGIALYPL-----NRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLL 228 (315)
Q Consensus 154 ~~a~~aL~~Ls~~~~-----~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll 228 (315)
+.|+++|+|||.... ++..+.+.|++|.|+++|. +++..+++.|+++|+||+.++.++..| ..++++.|+.+|
T Consensus 327 E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~-s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip~LV~LL 404 (584)
T 3l6x_A 327 EASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLT-NEHERVVKAASGALRNLAVDARNKELI-GKHAIPNLVKNL 404 (584)
T ss_dssp HHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGG-CSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHc-CCCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHHHHHHHh
Confidence 566666666665331 2223345789999999996 567889999999999999988888766 678999999999
Q ss_pred hcCCC-----CChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhC--CHHHHHHHHHHHHHHhhC
Q 021242 229 DLGTG-----SGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNG--SAKGKTKAVALLKILVDD 297 (315)
Q Consensus 229 ~~~~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~--~~~~k~~A~~~L~~l~~~ 297 (315)
..++. .+..+...++++|.||+..+ +..++.+++ .|+++.|+.+++++ ++.+++.|+++|.++-.+
T Consensus 405 ~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~-~~~~~~I~~--~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~ 477 (584)
T 3l6x_A 405 PGGQQNSSWNFSEDTVISILNTINEVIAEN-LEAAKKLRE--TQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY 477 (584)
T ss_dssp SSSSCSGGGTCCHHHHHHHHHHHHHHHTTC-HHHHHHHHH--TTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred cCCcccccccchHHHHHHHHHHHHHHhcCC-HHHHHHHHH--CCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence 87521 14577889999999998744 567788888 99999999999986 899999999999998754
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.98 E-value=5e-31 Score=259.99 Aligned_cols=282 Identities=13% Similarity=0.146 Sum_probs=239.9
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCc-----------------------------hhh---HHHHhCCCHHH
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDA-----------------------------EIR---PMISEAGSIPY 52 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~-----------------------------~~~---~~i~~~g~i~~ 52 (315)
.+.||.||++|+++++.++..|+++|.|++..++ .++ +.+++.|+||+
T Consensus 420 ~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~ 499 (810)
T 3now_A 420 KASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTA 499 (810)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHH
Confidence 5789999999999999999999999999997542 123 68889999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhcCcccc-hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhh
Q 021242 53 LAEILYSSSHAFQENAAATLLNLSITSR-DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGA 131 (315)
Q Consensus 53 Lv~lL~~~~~~~~~~a~~~L~~la~~~~-~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~ 131 (315)
|+.+|+++++.+|+.|+++|.|++.+.+ +..+.+.|++++|+.+|++ +++..+..|+++|.+|+...+....+..
T Consensus 500 LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s----~~~~~k~~Aa~AL~nL~~~~~p~~~~~~ 575 (810)
T 3now_A 500 LCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALE----GTEKGKRHATQALARIGITINPEVSFSG 575 (810)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHS----SCHHHHHHHHHHHHHHHHHSCHHHHTTT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcc----CCHHHHHHHHHHHHHHhcCCChhhhhcc
Confidence 9999999999999999999999997755 5567799999999999997 6788999999999999975444443321
Q ss_pred --ccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCC-CcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcC
Q 021242 132 --KRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYP-LNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGC 208 (315)
Q Consensus 132 --~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~ 208 (315)
..+++|+|+.+|.+ ..+...+..|+++|.||+..+ +++..+++.|+++.|+.+|. +++..++..|+++|+||+..
T Consensus 576 ~~~~~aIppLv~LL~~-~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~-s~~~~Vq~~A~~~L~NLa~~ 653 (810)
T 3now_A 576 QRSLDVIRPLLNLLQQ-DCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLM-EDHLYLTRAAAQCLCNLVMS 653 (810)
T ss_dssp HHHHHTHHHHHHTTST-TSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH-SCCTTHHHHHHHHHHHHTTS
T ss_pred hhhhcHHHHHHHHhCC-CCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhCC
Confidence 12459999999983 224445578999999999964 77889999999999999997 56788999999999999999
Q ss_pred hhhHHHHHh-cCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHH
Q 021242 209 EESVDEFKK-CCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKA 287 (315)
Q Consensus 209 ~~~~~~i~~-~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A 287 (315)
++.+..+.+ .|+++.|+.++... +..+++.|+++|++|+..+ +...+.+++ ..|+++.|+.+++++++.+|+.|
T Consensus 654 ~~~~~~~v~~~g~l~~Lv~LL~s~---d~~vq~~Aa~ALanLt~~s-~~~~~~ii~-~~g~I~~Lv~LL~s~d~~vq~~A 728 (810)
T 3now_A 654 EDVIKMFEGNNDRVKFLALLCEDE---DEETATACAGALAIITSVS-VKCCEKILA-IASWLDILHTLIANPSPAVQHRG 728 (810)
T ss_dssp HHHHHHHHSSSSHHHHHHHGGGCS---SHHHHHHHHHHHHHHHHHC-HHHHHHHHT-STTHHHHHHHHHTCSSHHHHHHH
T ss_pred hHHHHHHHhccCcHHHHHHHhcCC---CHHHHHHHHHHHHHHhCCC-HHHHHHHHH-HcCCHHHHHHHHCCCCHHHHHHH
Confidence 999888885 56799999999975 8899999999999998743 456677875 37999999999999999999999
Q ss_pred HHHHHHHhhC
Q 021242 288 VALLKILVDD 297 (315)
Q Consensus 288 ~~~L~~l~~~ 297 (315)
.+++.++...
T Consensus 729 ~~aL~NL~~~ 738 (810)
T 3now_A 729 IVIILNMINA 738 (810)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhC
Confidence 9999999753
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=99.98 E-value=2.6e-30 Score=248.01 Aligned_cols=279 Identities=15% Similarity=0.202 Sum_probs=243.6
Q ss_pred hhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCC-----HHHHHHHHHHHHhcCcc
Q 021242 4 KRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSS-----HAFQENAAATLLNLSIT 78 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-----~~~~~~a~~~L~~la~~ 78 (315)
..+.||.|+.+|.+++++++..|+++|.+++.+++.+|..+.+.|++++|+.+|...+ ..+++.++++|.+++.+
T Consensus 160 ~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~ 239 (529)
T 3tpo_A 160 DGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN 239 (529)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCC
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhc
Confidence 3478999999999999999999999999999998999999999999999999997654 35788999999999987
Q ss_pred cc--hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCc-hhhhhhccccHHHHHHHhhccCCChHHHHH
Q 021242 79 SR--DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSY-RPIIGAKRDIIHSLIEIIKTRNSPLRSVKD 155 (315)
Q Consensus 79 ~~--~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~-~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~ 155 (315)
.. ..+....+++|.|+.++.+ ++++++..++++|.+|+..++. ...+.. .|+++.|+.++. +.++.++..
T Consensus 240 ~~~~~~~~~~~~~lp~L~~LL~~----~~~~v~~~a~~aL~~l~~~~~~~~~~v~~-~g~i~~Lv~lL~--~~~~~v~~~ 312 (529)
T 3tpo_A 240 KNPAPPLDAVEQILPTLVRLLHH----NDPEVLADSCWAISYLTDGPNERIEMVVK-KGVVPQLVKLLG--ATELPIVTP 312 (529)
T ss_dssp CTTCCCHHHHHHHHHHHHHHTTS----SCHHHHHHHHHHHHHHHSSCHHHHHHHHT-TTCHHHHHHHHT--CSCHHHHHH
T ss_pred ccchhhHHHHhhHHHHHHHHhcC----CcHHHHHHHHHHHHHhhhhhhhhHHHHHh-ccchHHHHHHhc--CCChhHHHH
Confidence 64 3444467899999999997 7889999999999999976554 445555 466999999999 568899999
Q ss_pred HHHHHHHhccC-CCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCC
Q 021242 156 ALKALFGIALY-PLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTG 233 (315)
Q Consensus 156 a~~aL~~Ls~~-~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~ 233 (315)
|+++|+||+.. ++.+..+++.|+++.|+.+|. +++..++..|+++|+||+. .+..+..+.+.|+++.|+.++.++
T Consensus 313 a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~-~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-- 389 (529)
T 3tpo_A 313 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-- 389 (529)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTT-CSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS--
T ss_pred HHHHHHHHHccchHHHHHHhhcccHHHHHHHHc-CCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC--
Confidence 99999999985 456678889999999999996 5778899999999999987 567788888889999999999987
Q ss_pred CChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 021242 234 SGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILV 295 (315)
Q Consensus 234 ~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~ 295 (315)
+..++..|+++|.|++..+..+....+++ .|++++|+.++++.+++++..+...|.++-
T Consensus 390 -~~~v~~~A~~aL~nl~~~~~~~~~~~l~~--~g~i~~L~~LL~~~d~~i~~~~L~aL~nil 448 (529)
T 3tpo_A 390 -DFKTQKAAAWAITNYTSGGTVEQIVYLVH--CGIIEPLMNLLSAKDTKIIQVILDAISNIF 448 (529)
T ss_dssp -CHHHHHHHHHHHHHHHHHSCHHHHHHHHH--TTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHcCCCHHHHHHHHH--CcCHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 88999999999999998766666778888 999999999999999999999999887764
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-31 Score=259.93 Aligned_cols=283 Identities=14% Similarity=0.160 Sum_probs=244.8
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhh-
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSL- 83 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~- 83 (315)
.+.+|.|+++|+++++.+|..|+++|.+++.+ +++|..+++.|+||+|+.+|+++++..++.|+++|.|++.+.++..
T Consensus 494 aGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~ 572 (810)
T 3now_A 494 EGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVS 572 (810)
T ss_dssp TTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred CcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhh
Confidence 36899999999999999999999999999965 6799999999999999999999999999999999999998754322
Q ss_pred h---hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcC-CCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHH
Q 021242 84 M---STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVV-DSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKA 159 (315)
Q Consensus 84 i---~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~a 159 (315)
+ ...+++++|+.+|.+. .+...+..|+++|.||+.. ++++..+.+.+| ++.|+.++. ++++.++..|+++
T Consensus 573 ~~~~~~~~aIppLv~LL~~~---~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~-l~~Lv~LL~--s~~~~Vq~~A~~~ 646 (810)
T 3now_A 573 FSGQRSLDVIRPLLNLLQQD---CTALENFESLMALTNLASMNESVRQRIIKEQG-VSKIEYYLM--EDHLYLTRAAAQC 646 (810)
T ss_dssp TTTHHHHHTHHHHHHTTSTT---SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTH-HHHHHHHHH--SCCTTHHHHHHHH
T ss_pred hcchhhhcHHHHHHHHhCCC---CcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCC-HHHHHHHHc--CCCHHHHHHHHHH
Confidence 2 1246999999999851 3445566899999999975 467777877655 999999999 5688899999999
Q ss_pred HHHhccCCCcHHHHHh-hCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHh-cCCHHHHHHHhhcCCCCCh
Q 021242 160 LFGIALYPLNRYQVIA-LGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKK-CCGIGVLVDLLDLGTGSGH 236 (315)
Q Consensus 160 L~~Ls~~~~~~~~i~~-~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~-~~~i~~Lv~ll~~~~~~~~ 236 (315)
|+||+.+++.+..+++ .|+++.|+.++. .++..++..|+++|+||+. ++..++.+++ .|+++.|+.++.++ +.
T Consensus 647 L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~-s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~---d~ 722 (810)
T 3now_A 647 LCNLVMSEDVIKMFEGNNDRVKFLALLCE-DEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANP---SP 722 (810)
T ss_dssp HHHHTTSHHHHHHHHSSSSHHHHHHHGGG-CSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCS---SH
T ss_pred HHHHhCChHHHHHHHhccCcHHHHHHHhc-CCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCC---CH
Confidence 9999999988888886 799999999996 4678899999999999988 7888899988 78999999999986 99
Q ss_pred hHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhC---CHHHHHHHHHHHHHHhhCCCCC
Q 021242 237 RVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNG---SAKGKTKAVALLKILVDDGNMN 301 (315)
Q Consensus 237 ~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~---~~~~k~~A~~~L~~l~~~~~~~ 301 (315)
++++.|+++|.|++.. +++.+..+++ .|++++|+.+++.. ++++.+.|..+|.++-+++...
T Consensus 723 ~vq~~A~~aL~NL~~~-s~e~~~~l~e--~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~~~ 787 (810)
T 3now_A 723 AVQHRGIVIILNMINA-GEEIAKKLFE--TDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRIIE 787 (810)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHT--STHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHhC-CHHHHHHHHH--CCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCCcc
Confidence 9999999999999874 4567788887 99999999998654 7999999999999998765543
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=99.97 E-value=4.1e-30 Score=245.57 Aligned_cols=279 Identities=16% Similarity=0.214 Sum_probs=242.6
Q ss_pred hhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCC-----HHHHHHHHHHHHhcCcc
Q 021242 4 KRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSS-----HAFQENAAATLLNLSIT 78 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-----~~~~~~a~~~L~~la~~ 78 (315)
..+.||.|+++|+++++++|..|+++|.+++.+++.+|..+.+.|++++|+.+|.+.+ ..+++.++++|.+++.+
T Consensus 141 ~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~ 220 (510)
T 3ul1_B 141 DGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN 220 (510)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCC
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhc
Confidence 3468999999999999999999999999999998999999999999999999998754 35788999999999987
Q ss_pred cc--hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCch-hhhhhccccHHHHHHHhhccCCChHHHHH
Q 021242 79 SR--DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYR-PIIGAKRDIIHSLIEIIKTRNSPLRSVKD 155 (315)
Q Consensus 79 ~~--~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~-~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~ 155 (315)
.. ..+....++++.|+.++++ ++++++..++++|.+|+...+.+ ..+.. .|+++.|+.++. ..++.++..
T Consensus 221 ~~~~~~~~~~~~~lp~L~~LL~~----~~~~v~~~A~~aL~~L~~~~~~~~~~i~~-~g~i~~Lv~lL~--~~~~~v~~~ 293 (510)
T 3ul1_B 221 KNPAPPLDAVEQILPTLVRLLHH----NDPEVLADSCWAISYLTDGPNERIEMVVK-KGVVPQLVKLLG--ATELPIVTP 293 (510)
T ss_dssp CSSCCCHHHHHHHHHHHHHHTTC----SCHHHHHHHHHHHHHHTSSCHHHHHHHHT-TTCHHHHHHHHT--CSCHHHHHH
T ss_pred ccchhHHHHHHhHHHHHHHHHhc----CCHHHHHHHHHHHHHHhhchhhhHHHHHh-cccchhhhhhhc--CCChhhhhH
Confidence 64 3444457899999999997 78899999999999999766544 44555 466999999999 568899999
Q ss_pred HHHHHHHhccCC-CcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCC
Q 021242 156 ALKALFGIALYP-LNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTG 233 (315)
Q Consensus 156 a~~aL~~Ls~~~-~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~ 233 (315)
|+++|+|++... +.+..+++.|+++.|+.+|. +++..++..|+++|+||+. .+..+..+.+.|+++.|+.++.++
T Consensus 294 al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~-~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-- 370 (510)
T 3ul1_B 294 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-- 370 (510)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTT-CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS--
T ss_pred HHHHHHHhhcCCHHHHHHHhhccchHHHHHHhc-CCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC--
Confidence 999999998854 56678889999999999996 5778899999999999987 577888888989999999999987
Q ss_pred CChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 021242 234 SGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILV 295 (315)
Q Consensus 234 ~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~ 295 (315)
+..++..|+++|.|++..+..+....+++ .|+++.|+.++++.+++++..+.+.|.++-
T Consensus 371 -~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~--~g~i~~L~~LL~~~d~~i~~~~L~aL~nil 429 (510)
T 3ul1_B 371 -DFKTQKEAAWAITNYTSGGTVEQIVYLVH--CGIIEPLMNLLSAKDTKIIQVILDAISNIF 429 (510)
T ss_dssp -CHHHHHHHHHHHHHHHHHCCHHHHHHHHH--TTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHccCCHHHHHHHHH--CCCHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 89999999999999998766667778888 999999999999999999999999887763
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8.6e-31 Score=238.19 Aligned_cols=245 Identities=17% Similarity=0.151 Sum_probs=208.9
Q ss_pred hhhhHHHHHHHhCC-----------CCHHHHHHHHHHHHHHhccCchhhHHHHhC-CCHHHHHHHHcCCCHHHHHHHHHH
Q 021242 4 KRRTVRSLVTKLGS-----------VSEQTRAEALAELRLLSKHDAEIRPMISEA-GSIPYLAEILYSSSHAFQENAAAT 71 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~-----------~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~~~~~a~~~ 71 (315)
..+.++.|+.+|.+ .+++.|..|+++|.+++..++.+|..+... |+||.|+.+|++.++++++.|+++
T Consensus 71 ~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~a 150 (354)
T 3nmw_A 71 ELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASV 150 (354)
T ss_dssp HTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHH
Confidence 34688999999952 246899999999999998877788888764 559999999999999999999999
Q ss_pred HHhcCcc-c-c-hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc-CCCchhhhhhccccHHHHHHHhhccC
Q 021242 72 LLNLSIT-S-R-DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV-VDSYRPIIGAKRDIIHSLIEIIKTRN 147 (315)
Q Consensus 72 L~~la~~-~-~-~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~ll~~~~ 147 (315)
|+||+.+ + + +..+.+.|+++.|+++|.+ .+++++++.++++|++|+. .++++..+....|.+|.|+++|.++.
T Consensus 151 L~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~---~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~ 227 (354)
T 3nmw_A 151 LRNLSWRADVNSKKTLREVGSVKALMECALE---VKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRS 227 (354)
T ss_dssp HHHHHTTCCHHHHHHHHHTTHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCC
T ss_pred HHHHhccCCHHHHHHHHHCCCHHHHHHHHhc---CCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCC
Confidence 9999985 3 3 4556799999999998643 1578899999999999998 66788888743466999999998431
Q ss_pred CC--hHHHHHHHHHHHHhcc----CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHhcCC
Q 021242 148 SP--LRSVKDALKALFGIAL----YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKKCCG 220 (315)
Q Consensus 148 ~~--~~~~~~a~~aL~~Ls~----~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~ 220 (315)
.. .++++.|+++|+||+. +++++..+++.|+++.|+++|. +++..+++.|+++|.||+. ++++++.+.+.|+
T Consensus 228 ~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~ 306 (354)
T 3nmw_A 228 QTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK-SHSLTIVSNACGTLWNLSARNPKDQEALWDMGA 306 (354)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTH
T ss_pred CcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHc-CCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCC
Confidence 11 1588999999999996 7888999999999999999996 5677899999999999994 7999999999999
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCH
Q 021242 221 IGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGE 255 (315)
Q Consensus 221 i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~ 255 (315)
|+.|+++++++ +..+++.|+++|.+|+...+.
T Consensus 307 i~~Lv~LL~s~---~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 307 VSMLKNLIHSK---HKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHTTTTCS---SHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCC---CHHHHHHHHHHHHHHHcCCHH
Confidence 99999999986 889999999999999986543
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-28 Score=233.68 Aligned_cols=281 Identities=18% Similarity=0.160 Sum_probs=244.8
Q ss_pred hhhHHHHHHHhCCCC-HHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc--h
Q 021242 5 RRTVRSLVTKLGSVS-EQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR--D 81 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~--~ 81 (315)
.+.+|.|+++|++++ +++|..|+++|.+++..+++++..+++.|+||.|+.+|.+.++.+++.|+++|.+++.+.. +
T Consensus 116 ~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~ 195 (528)
T 4b8j_A 116 SGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCR 195 (528)
T ss_dssp TTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhH
Confidence 467999999999987 9999999999999999888999999999999999999999999999999999999998754 4
Q ss_pred hhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHH
Q 021242 82 SLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALF 161 (315)
Q Consensus 82 ~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~ 161 (315)
..+...|+++.|+.+|.. ..++.++..++++|.+|+...+....... .++++.|+.++. ++++.++..|+++|.
T Consensus 196 ~~i~~~g~l~~Ll~lL~~---~~~~~v~~~a~~~L~~L~~~~~~~~~~~~-~~~l~~L~~lL~--~~~~~v~~~a~~aL~ 269 (528)
T 4b8j_A 196 DLVLANGALLPLLAQLNE---HTKLSMLRNATWTLSNFCRGKPQPSFEQT-RPALPALARLIH--SNDEEVLTDACWALS 269 (528)
T ss_dssp HHHHHTTCHHHHHHTCCT---TCCHHHHHHHHHHHHHHHCSSSCCCHHHH-TTHHHHHHHHTT--CCCHHHHHHHHHHHH
T ss_pred HHHHHCCcHHHHHHHHhc---CCCHHHHHHHHHHHHHHHcCCCCCcHHHH-HHHHHHHHHHHC--CCCHHHHHHHHHHHH
Confidence 566688999999999953 26789999999999999976544333333 366999999998 568999999999999
Q ss_pred HhccCCCcH-HHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHH
Q 021242 162 GIALYPLNR-YQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVK 239 (315)
Q Consensus 162 ~Ls~~~~~~-~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~ 239 (315)
+|+..++.+ ..+++.|+++.|+.+|. +++..++..|+++|.+|+. .+..++.+.+.|+++.|+.+|.++ .+..++
T Consensus 270 ~l~~~~~~~~~~~~~~g~v~~Lv~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~~v~ 346 (528)
T 4b8j_A 270 YLSDGTNDKIQAVIEAGVCPRLVELLL-HPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQN--LKKSIK 346 (528)
T ss_dssp HHTSSCHHHHHHHHHTTCHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSC--CCHHHH
T ss_pred HHHcCCHHHHHHHHHcCHHHHHHHHHc-CCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCC--CcHHHH
Confidence 999876655 56778899999999996 5677899999999999987 577888888888999999999964 378999
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhC
Q 021242 240 ENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDD 297 (315)
Q Consensus 240 ~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~ 297 (315)
..|+++|.+++.. .+.....++. .|+++.|+.+++++++.++..|.++|.++...
T Consensus 347 ~~A~~~L~nl~~~-~~~~~~~~~~--~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 347 KEACWTISNITAG-NKDQIQAVIN--AGIIGPLVNLLQTAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHHHHHHHHHHTS-CHHHHHHHHH--TTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC-CHHHHHHHHH--CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 9999999999974 4456677877 89999999999999999999999999999765
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.96 E-value=7.4e-28 Score=230.56 Aligned_cols=279 Identities=19% Similarity=0.196 Sum_probs=244.7
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHH-cCCCHHHHHHHHHHHHhcCcccc-hh
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEIL-YSSSHAFQENAAATLLNLSITSR-DS 82 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~~la~~~~-~~ 82 (315)
.+.++.|+.+|++++++++..|+++|.+++..++.++..+.+.|++++|+.+| .+.++.++..|+++|.+++.+.+ ..
T Consensus 159 ~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~ 238 (528)
T 4b8j_A 159 HGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPS 238 (528)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCC
T ss_pred CCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCc
Confidence 46899999999999999999999999999988888999999999999999999 56789999999999999998853 44
Q ss_pred hhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCch-hhhhhccccHHHHHHHhhccCCChHHHHHHHHHHH
Q 021242 83 LMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYR-PIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALF 161 (315)
Q Consensus 83 ~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~-~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~ 161 (315)
.....++++.|+.+|.+ ++++++..++++|.+|+...+.+ ..+... |+++.|+.+|. +.++.++..|+++|.
T Consensus 239 ~~~~~~~l~~L~~lL~~----~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~-g~v~~Lv~lL~--~~~~~v~~~a~~~L~ 311 (528)
T 4b8j_A 239 FEQTRPALPALARLIHS----NDEEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLL--HPSPSVLIPALRTVG 311 (528)
T ss_dssp HHHHTTHHHHHHHHTTC----CCHHHHHHHHHHHHHHTSSCHHHHHHHHHT-TCHHHHHHHTT--CSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHHHcCCHHHHHHHHHc-CHHHHHHHHHc--CCChhHHHHHHHHHH
Confidence 44468999999999987 68899999999999999765543 455554 66999999999 558899999999999
Q ss_pred HhccC-CCcHHHHHhhCCcHHHHHHHhcCC-CcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChhH
Q 021242 162 GIALY-PLNRYQVIALGGVQPLFSLVVNGG-RAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHRV 238 (315)
Q Consensus 162 ~Ls~~-~~~~~~i~~~g~v~~L~~lL~~~~-~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~ 238 (315)
||+.. +..+..+++.|+++.|+.+|. ++ +..++..|+++|.||+. .++....+.+.|+++.|+.++.++ +..+
T Consensus 312 nl~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~---~~~v 387 (528)
T 4b8j_A 312 NIVTGDDAQTQCIIDHQALPCLLSLLT-QNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTA---EFDI 387 (528)
T ss_dssp HHTTSCHHHHHHHHTTTHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS---CHHH
T ss_pred HHHcCCHHHHHHHHHhhhHHHHHHHHc-CCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC---CHHH
Confidence 99984 456667888999999999997 45 77899999999999986 567788888889999999999986 8899
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhh
Q 021242 239 KENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 239 ~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
+..|+++|.+++..+.+.....+++ .|+++.|+.++.++++.++..|..+|.++-.
T Consensus 388 ~~~a~~aL~nl~~~~~~~~~~~l~~--~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~ 443 (528)
T 4b8j_A 388 KKEAAWAISNATSGGSHDQIKYLVS--EGCIKPLCDLLICPDIRIVTVCLEGLENILK 443 (528)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHH--TTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHH--CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 9999999999998755567788887 9999999999999999999999999888853
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=229.31 Aligned_cols=280 Identities=16% Similarity=0.129 Sum_probs=244.3
Q ss_pred hhhHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc--h
Q 021242 5 RRTVRSLVTKLGSV-SEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR--D 81 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~--~ 81 (315)
.+.+|.|+++|+++ ++++|..|+++|.+++..+++.+..+++.|++|.|+.+|++.++.+++.|+++|.+++.+.. +
T Consensus 129 ~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~ 208 (530)
T 1wa5_B 129 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 208 (530)
T ss_dssp TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccch
Confidence 46799999999997 89999999999999998888889999999999999999999999999999999999998753 4
Q ss_pred hhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCC-CchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHH
Q 021242 82 SLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVD-SYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKAL 160 (315)
Q Consensus 82 ~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL 160 (315)
..+...|+++.|+.++.+ .+++++..++++|.+|+... +....... .++++.|+.++. ++++.++..|+++|
T Consensus 209 ~~~~~~~~l~~L~~ll~~----~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~l~~L~~lL~--~~d~~v~~~a~~~L 281 (530)
T 1wa5_B 209 DYVLQCNAMEPILGLFNS----NKPSLIRTATWTLSNLCRGKKPQPDWSVV-SQALPTLAKLIY--SMDTETLVDACWAI 281 (530)
T ss_dssp HHHHHTTCHHHHHHGGGS----CCHHHHHHHHHHHHHHHCCSSSCCCHHHH-GGGHHHHHHHTT--CCCHHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHhcc----CCHHHHHHHHHHHHHHhCCCCCCCcHHHH-HhHHHHHHHHHc--CCCHHHHHHHHHHH
Confidence 556688999999999997 67899999999999999754 44443333 366999999998 56889999999999
Q ss_pred HHhccCC-CcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChhH
Q 021242 161 FGIALYP-LNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHRV 238 (315)
Q Consensus 161 ~~Ls~~~-~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~ 238 (315)
.+|+... +....+++.|+++.|+.+|. +++..++..|+++|.+++. .+...+.+.+.|+++.|+.+|.++ +..+
T Consensus 282 ~~L~~~~~~~~~~~~~~~~v~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~---~~~v 357 (530)
T 1wa5_B 282 SYLSDGPQEAIQAVIDVRIPKRLVELLS-HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP---KENI 357 (530)
T ss_dssp HHHHSSCHHHHHHHHHTTCHHHHHHGGG-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS---CHHH
T ss_pred HHHhCCCHHHHHHHHhcCcHHHHHHHHC-CCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCC---CHHH
Confidence 9999854 45677788899999999996 5677889999999999986 467777888888999999999976 7899
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhCC
Q 021242 239 KENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDDG 298 (315)
Q Consensus 239 ~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~~ 298 (315)
++.|+++|.+++... +...+.++. .|+++.|+.+++++++.++..|+++|.++....
T Consensus 358 r~~A~~aL~~l~~~~-~~~~~~~~~--~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~ 414 (530)
T 1wa5_B 358 KKEACWTISNITAGN-TEQIQAVID--ANLIPPLVKLLEVAEYKTKKEACWAISNASSGG 414 (530)
T ss_dssp HHHHHHHHHHHTTSC-HHHHHHHHH--TTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHH--CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence 999999999998743 456677777 899999999999999999999999999997643
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-28 Score=210.01 Aligned_cols=237 Identities=24% Similarity=0.298 Sum_probs=212.8
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCccc-c-hhh
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITS-R-DSL 83 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~-~-~~~ 83 (315)
+.++.|+++|+++++++|..|+++|.+++..+++++..+.+.|+++.|+++|++.++.++..|+++|.+++.+. . +..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 36899999999999999999999999999888889999999999999999999999999999999999999984 3 456
Q ss_pred hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhh-cCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHH
Q 021242 84 MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLL-VVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFG 162 (315)
Q Consensus 84 i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls-~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~ 162 (315)
+.+.|+++.|+.++++ ++++++..++++|.+|+ ..++++..+.+. |+++.|+.++. ++++.++..|+++|+|
T Consensus 82 ~~~~~~i~~l~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~~l~--~~~~~~~~~a~~~L~~ 154 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTS----TDSEVQKEAARALANIASGPDEAIKAIVDA-GGVEVLVKLLT--STDSEVQKEAARALAN 154 (252)
T ss_dssp HHHTTHHHHHHHHTTC----SSHHHHHHHHHHHHHHTTSCHHHHHHHHHT-THHHHHHHHTT--CSCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcC----CCHHHHHHHHHHHHHHHcCCHHHHHHHHHC-CCHHHHHHHHc--CCCHHHHHHHHHHHHH
Confidence 6799999999999997 68899999999999999 566778877775 55999999999 5689999999999999
Q ss_pred hccCC-CcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHH
Q 021242 163 IALYP-LNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKE 240 (315)
Q Consensus 163 Ls~~~-~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~ 240 (315)
|+... +.+..+++.|+++.|++++. +++..++..++++|.+|+. .+..++.+.+.|+++.|++++.++ ++.+++
T Consensus 155 l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~---~~~v~~ 230 (252)
T 4hxt_A 155 IASGPDEAIKAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST---DSEVQK 230 (252)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS---CHHHHH
T ss_pred HHcCCHHHHHHHHHCcCHHHHHHHHC-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC---cHHHHH
Confidence 99854 45578889999999999996 5678899999999999987 677888888999999999999976 889999
Q ss_pred HHHHHHHHHhccC
Q 021242 241 NAVSALLNLVNFG 253 (315)
Q Consensus 241 ~a~~~L~~l~~~~ 253 (315)
.|+++|.+++...
T Consensus 231 ~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 231 EAQRALENIKSGG 243 (252)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCC
Confidence 9999999998754
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.5e-27 Score=219.23 Aligned_cols=278 Identities=16% Similarity=0.141 Sum_probs=241.4
Q ss_pred hhHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc--hh
Q 021242 6 RTVRSLVTKLGSV-SEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR--DS 82 (315)
Q Consensus 6 ~~i~~Lv~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~--~~ 82 (315)
+.++.|++.|+++ ++++|..|+++|.+++..++++...+.+.|++|.|+.+|++.++.+++.|+++|.+++.+.. +.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~ 143 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 143 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 6899999999998 89999999999999998877888889999999999999999999999999999999998763 45
Q ss_pred hhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCC--CchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHH
Q 021242 83 LMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVD--SYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKAL 160 (315)
Q Consensus 83 ~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~--~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL 160 (315)
.+.+.|+++.|+.++++ ..+.+++..++++|.+|+... ..+..+. .+++|.|+.++. ++++.++..|+++|
T Consensus 144 ~~~~~~~i~~L~~~l~~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~~l~--~~~~~v~~~a~~~L 216 (450)
T 2jdq_A 144 YVLDCNILPPLLQLFSK---QNRLTMTRNAVWALSNLCRGKSPPPEFAKV--SPCLNVLSWLLF--VSDTDVLADACWAL 216 (450)
T ss_dssp HHHHTTCHHHHHHHTTS---CCCHHHHHHHHHHHHHHHCCSSSCCCGGGT--GGGHHHHHHHTT--CCCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHhcC---CCCHHHHHHHHHHHHHHhCCCCCCCCHHHH--HHHHHHHHHHHc--cCCHHHHHHHHHHH
Confidence 56688999999999985 257899999999999999653 3333333 366999999999 56889999999999
Q ss_pred HHhccCC-CcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcC-hhhHHHHHhcCCHHHHHHHhhcCCCCChhH
Q 021242 161 FGIALYP-LNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGC-EESVDEFKKCCGIGVLVDLLDLGTGSGHRV 238 (315)
Q Consensus 161 ~~Ls~~~-~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~ 238 (315)
.+|+... +.+..+++.|+++.|++++. +++..++..|+++|.+++.. +..++.+.+.|+++.|+.++.++ ++.+
T Consensus 217 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~---~~~v 292 (450)
T 2jdq_A 217 SYLSDGPNDKIQAVIDAGVCRRLVELLM-HNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSP---KESI 292 (450)
T ss_dssp HHHTSSSHHHHHHHHHTTTHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCS---SHHH
T ss_pred HHHHCCCcHHHHHHHHcCcHHHHHHHHC-CCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCC---CHHH
Confidence 9999854 56677788999999999996 56788999999999999875 55666778888899999999975 7899
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhC
Q 021242 239 KENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDD 297 (315)
Q Consensus 239 ~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~ 297 (315)
+..++++|.+++.. .+...+.+++ .|+++.|+.+++++++.+|..|+++|.++...
T Consensus 293 r~~a~~~L~~l~~~-~~~~~~~~~~--~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 293 KKEACWTISNITAG-NRAQIQTVID--ANIFPALISILQTAEFRTRKEAAWAITNATSG 348 (450)
T ss_dssp HHHHHHHHHHHTTS-CHHHHHHHHH--TTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHH--CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 99999999999864 3456677877 89999999999999999999999999999754
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-27 Score=220.04 Aligned_cols=279 Identities=16% Similarity=0.169 Sum_probs=241.7
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcC-CCHHHHHHHHHHHHhcCccc-c-h
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYS-SSHAFQENAAATLLNLSITS-R-D 81 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~la~~~-~-~ 81 (315)
.+.++.|+++|+++++++|..|+++|.+++..++.++..+.+.|+++.|+.++.+ .++.++..|+++|.+++.+. + .
T Consensus 106 ~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~ 185 (450)
T 2jdq_A 106 AGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP 185 (450)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCC
Confidence 5789999999999999999999999999998888899999999999999999985 68899999999999999765 2 2
Q ss_pred hhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCC-CchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHH
Q 021242 82 SLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVD-SYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKAL 160 (315)
Q Consensus 82 ~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL 160 (315)
......++++.|+.++++ ++++++..++++|.+|+... +....+... |+++.|+.++. +.++.++..|+++|
T Consensus 186 ~~~~~~~~l~~L~~~l~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~ll~--~~~~~v~~~a~~~L 258 (450)
T 2jdq_A 186 EFAKVSPCLNVLSWLLFV----SDTDVLADACWALSYLSDGPNDKIQAVIDA-GVCRRLVELLM--HNDYKVVSPALRAV 258 (450)
T ss_dssp CGGGTGGGHHHHHHHTTC----CCHHHHHHHHHHHHHHTSSSHHHHHHHHHT-TTHHHHHHHTT--CSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcc----CCHHHHHHHHHHHHHHHCCCcHHHHHHHHc-CcHHHHHHHHC--CCchhHHHHHHHHH
Confidence 222237899999999997 67899999999999999754 445555554 66999999998 56889999999999
Q ss_pred HHhccCCCc-HHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChhH
Q 021242 161 FGIALYPLN-RYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHRV 238 (315)
Q Consensus 161 ~~Ls~~~~~-~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~ 238 (315)
.+++...+. +..+++.|+++.|++++. +++..++..|+++|.+++. +++..+.+.+.++++.++.++.++ ++.+
T Consensus 259 ~~l~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~---~~~v 334 (450)
T 2jdq_A 259 GNIVTGDDIQTQVILNCSALQSLLHLLS-SPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTA---EFRT 334 (450)
T ss_dssp HHHTTSCHHHHHHHHTTTHHHHHHHHTT-CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS---CHHH
T ss_pred HHHhhCChHHHHHHHHCccHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC---CHHH
Confidence 999986554 456778899999999996 5678899999999999986 677888888888999999999986 8899
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhh
Q 021242 239 KENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 239 ~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
+..++++|.+++..+.++..+.+++ .|+++.|+.++++++++++..|.+.|.++..
T Consensus 335 ~~~a~~~L~~l~~~~~~~~~~~l~~--~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 335 RKEAAWAITNATSGGSAEQIKYLVE--LGCIKPLCDLLTVMDSKIVQVALNGLENILR 390 (450)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHH--HTCHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHH--CCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999999999997644556677777 8999999999999999999999999988864
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=212.41 Aligned_cols=236 Identities=19% Similarity=0.224 Sum_probs=209.4
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCccc-c-hh
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITS-R-DS 82 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~-~-~~ 82 (315)
...++.++.+|++++++.|..|+++|+++...++.++..+.+.|+||.|+.+|++.++.++..|+++|.+++.+. . +.
T Consensus 11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 456899999999999999999999998776656788999999999999999999999999999999999999864 3 45
Q ss_pred hhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCch-hhhhhccccHHHHHHHhhccCCChHHHHHHHHHHH
Q 021242 83 LMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYR-PIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALF 161 (315)
Q Consensus 83 ~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~-~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~ 161 (315)
.+.+.|+++.|+.+|++ ++++++..++++|.+|+..++++ ..+.+. |+++.|+.++. ++++.++..|+++|+
T Consensus 91 ~i~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~lL~--~~~~~v~~~a~~~L~ 163 (252)
T 4db8_A 91 AVIDAGALPALVQLLSS----PNEQILQEALWALSNIASGGNEQIQAVIDA-GALPALVQLLS--SPNEQILQEALWALS 163 (252)
T ss_dssp HHHHTTHHHHHHHGGGC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHT-THHHHHHHGGG--CSCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHcC----CCHHHHHHHHHHHHHhhcCCchHHHHHHHC-CCHHHHHHHHh--CCCHHHHHHHHHHHH
Confidence 66789999999999997 68899999999999999888877 667765 55999999999 568999999999999
Q ss_pred HhccCC-CcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHH
Q 021242 162 GIALYP-LNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVK 239 (315)
Q Consensus 162 ~Ls~~~-~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~ 239 (315)
+|+..+ +++..+++.|+++.|++++. +++..+++.|+++|.+|+. .++.+..+.+.|+++.|+.++.++ ++.++
T Consensus 164 ~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~---~~~v~ 239 (252)
T 4db8_A 164 NIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE---NEKIQ 239 (252)
T ss_dssp HHTTSCHHHHHHHHHTTCHHHHHHGGG-CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS---SSHHH
T ss_pred HHHcCChHHHHHHHHCCCHHHHHHHHC-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC---CHHHH
Confidence 999854 56677888999999999996 5678899999999999985 678888899999999999999976 88999
Q ss_pred HHHHHHHHHHhc
Q 021242 240 ENAVSALLNLVN 251 (315)
Q Consensus 240 ~~a~~~L~~l~~ 251 (315)
+.|+++|.+|+.
T Consensus 240 ~~A~~~L~~l~~ 251 (252)
T 4db8_A 240 KEAQEALEKLQS 251 (252)
T ss_dssp HTHHHHHHTTC-
T ss_pred HHHHHHHHHHhc
Confidence 999999999974
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.4e-27 Score=225.41 Aligned_cols=279 Identities=16% Similarity=0.141 Sum_probs=243.5
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCccc-c-hh
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITS-R-DS 82 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~-~-~~ 82 (315)
.+.++.|+++|++++++++..|+++|.+++..++.++..+.+.|+++.|+.++.+.++.++..|+++|.+++.+. . ..
T Consensus 172 ~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~ 251 (530)
T 1wa5_B 172 ADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPD 251 (530)
T ss_dssp TTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCc
Confidence 467999999999999999999999999999888889999999999999999999999999999999999999875 3 33
Q ss_pred hhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCC-CchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHH
Q 021242 83 LMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVD-SYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALF 161 (315)
Q Consensus 83 ~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~ 161 (315)
.....++++.|+.++.+ ++++++..++++|.+|+... +....+.+. |+++.|+.++. +.++.++..|+++|.
T Consensus 252 ~~~~~~~l~~L~~lL~~----~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~-~~v~~Lv~lL~--~~~~~v~~~a~~~L~ 324 (530)
T 1wa5_B 252 WSVVSQALPTLAKLIYS----MDTETLVDACWAISYLSDGPQEAIQAVIDV-RIPKRLVELLS--HESTLVQTPALRAVG 324 (530)
T ss_dssp HHHHGGGHHHHHHHTTC----CCHHHHHHHHHHHHHHHSSCHHHHHHHHHT-TCHHHHHHGGG--CSCHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHcC----CCHHHHHHHHHHHHHHhCCCHHHHHHHHhc-CcHHHHHHHHC--CCChhhHHHHHHHHH
Confidence 44568899999999997 67899999999999999654 445555554 66999999999 568899999999999
Q ss_pred HhccCC-CcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHH
Q 021242 162 GIALYP-LNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVK 239 (315)
Q Consensus 162 ~Ls~~~-~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~ 239 (315)
+|+... +....+++.|+++.|+.+|. +++..++..|+++|.+++. +++..+.+++.++++.|+.++.++ +..++
T Consensus 325 ~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~---~~~v~ 400 (530)
T 1wa5_B 325 NIVTGNDLQTQVVINAGVLPALRLLLS-SPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA---EYKTK 400 (530)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS---CHHHH
T ss_pred HHHcCCHHHHHHHHHcchHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC---CHHHH
Confidence 999854 45566778899999999996 5677889999999999986 577778888889999999999976 88999
Q ss_pred HHHHHHHHHHhccCCH--HHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhh
Q 021242 240 ENAVSALLNLVNFGGE--RAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 240 ~~a~~~L~~l~~~~~~--~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
..++++|.+++..+.+ +....+++ .|+++.|+.++.++++.++..|.++|.++..
T Consensus 401 ~~a~~aL~~l~~~~~~~~~~~~~l~~--~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~ 457 (530)
T 1wa5_B 401 KEACWAISNASSGGLQRPDIIRYLVS--QGCIKPLCDLLEIADNRIIEVTLDALENILK 457 (530)
T ss_dssp HHHHHHHHHHHHHTTTCTHHHHHHHH--TTCHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHH--CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 9999999999986544 56677887 9999999999999999999999999988854
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.5e-27 Score=202.86 Aligned_cols=238 Identities=20% Similarity=0.247 Sum_probs=211.0
Q ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc--hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcC-CC
Q 021242 48 GSIPYLAEILYSSSHAFQENAAATLLNLSITSR--DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVV-DS 124 (315)
Q Consensus 48 g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~--~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~-~~ 124 (315)
|+||.|+.+|++.+++++..|+++|.+++.+.. ...+.+.|+++.|+.+|++ ++++++..++++|.+|+.. ++
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~~ 77 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS----TDSEVQKEAARALANIASGPDE 77 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHTTSCHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC----CCHHHHHHHHHHHHHHHcCChH
Confidence 679999999999999999999999999988764 4556789999999999997 6789999999999999976 67
Q ss_pred chhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhcc-CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHH
Q 021242 125 YRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL-YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIA 203 (315)
Q Consensus 125 ~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~ 203 (315)
++..+.+. |+++.|+.++. ++++.++..|+++|.+|+. +++++..+++.|+++.|++++. +++..++..++++|.
T Consensus 78 ~~~~~~~~-~~i~~l~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~-~~~~~~~~~a~~~L~ 153 (252)
T 4hxt_A 78 AIKAIVDA-GGVEVLVKLLT--STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT-STDSEVQKEAARALA 153 (252)
T ss_dssp HHHHHHHT-THHHHHHHHTT--CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHH
T ss_pred HHHHHHHC-CCHHHHHHHHc--CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence 78888775 55999999999 5689999999999999995 6778888999999999999996 567889999999999
Q ss_pred HHhc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHH
Q 021242 204 QIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAK 282 (315)
Q Consensus 204 ~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~ 282 (315)
+|+. .+..++.+.+.|+++.|+.++.++ ++.++..++++|.+++.. .+..++.+++ .|+++.|+.+++++++.
T Consensus 154 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~---~~~v~~~a~~~L~~l~~~-~~~~~~~l~~--~~~i~~L~~ll~~~~~~ 227 (252)
T 4hxt_A 154 NIASGPDEAIKAIVDAGGVEVLVKLLTST---DSEVQKEAARALANIASG-PTSAIKAIVD--AGGVEVLQKLLTSTDSE 227 (252)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHHHHTTS-BHHHHHHHHH--TTHHHHHHHGGGCSCHH
T ss_pred HHHcCCHHHHHHHHHCcCHHHHHHHHCCC---CHHHHHHHHHHHHHHHcC-CHHHHHHHHH--CCCHHHHHHHHCCCcHH
Confidence 9998 466668888888999999999975 889999999999999973 4556678887 99999999999999999
Q ss_pred HHHHHHHHHHHHhhCCC
Q 021242 283 GKTKAVALLKILVDDGN 299 (315)
Q Consensus 283 ~k~~A~~~L~~l~~~~~ 299 (315)
+++.|.++|.++.....
T Consensus 228 v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 228 VQKEAQRALENIKSGGW 244 (252)
T ss_dssp HHHHHHHHHHHHHHTCB
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 99999999999987543
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-27 Score=225.14 Aligned_cols=283 Identities=20% Similarity=0.184 Sum_probs=238.0
Q ss_pred hhhHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc--h
Q 021242 5 RRTVRSLVTKLGSV-SEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR--D 81 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~--~ 81 (315)
.+.++.|++.|.++ +++.+..|+.+|.+++.. ++++..+.+.|+||.|+++|++.++.++..|+++|.+++.+++ +
T Consensus 58 ~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 136 (529)
T 1jdh_A 58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136 (529)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHH
T ss_pred cchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchH
Confidence 36899999999755 899999999999999876 6699999999999999999999999999999999999998753 4
Q ss_pred hhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc-CCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHH
Q 021242 82 SLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV-VDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKAL 160 (315)
Q Consensus 82 ~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL 160 (315)
..+.+.|+++.|++++++ ++++++..++.+|.+++. +++++..+.+.++ ++.|+.+++++ .+......++.+|
T Consensus 137 ~~i~~~g~i~~L~~ll~~----~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~-i~~L~~ll~~~-~~~~~~~~a~~~L 210 (529)
T 1jdh_A 137 MAVRLAGGLQKMVALLNK----TNVKFLAITTDCLQILAYGNQESKLIILASGG-PQALVNIMRTY-TYEKLLWTTSRVL 210 (529)
T ss_dssp HHHHHHTHHHHHHHGGGC----CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH-HHHHHHHHHHC-CCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHhc----CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCC-HHHHHHHHHhC-ChHHHHHHHHHHH
Confidence 566689999999999997 678889899999999996 5677888887655 99999999863 4556777899999
Q ss_pred HHhccCCCcHHHHHhhCCcHHHHHHHhc--------------------------------------CCCcchHHHHHHHH
Q 021242 161 FGIALYPLNRYQVIALGGVQPLFSLVVN--------------------------------------GGRAGIVEDASAVI 202 (315)
Q Consensus 161 ~~Ls~~~~~~~~i~~~g~v~~L~~lL~~--------------------------------------~~~~~~~~~a~~~L 202 (315)
++|+.+++++..+++.|+++.|++++.+ +++..+++.++++|
T Consensus 211 ~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L 290 (529)
T 1jdh_A 211 KVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGIL 290 (529)
T ss_dssp HHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999999988888777766532 23456677788888
Q ss_pred HHHhcC-hhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCH--HHHHHHHHHccCcHHHHHHHHhhC
Q 021242 203 AQIAGC-EESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGE--RAAEEVKEMAMQVADGIADVAQNG 279 (315)
Q Consensus 203 ~~L~~~-~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~i~~~~~g~~~~L~~ll~~~ 279 (315)
.+|+.. +++++.+.+.|+++.|++++... ..++.+++.++.+|.+++....+ ..+..+++ .|+++.|+.+++++
T Consensus 291 ~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~--~~~i~~L~~lL~~~ 367 (529)
T 1jdh_A 291 SNLTCNNYKNKMMVCQVGGIEALVRTVLRA-GDREDITEPAICALRHLTSRHQEAEMAQNAVRL--HYGLPVVVKLLHPP 367 (529)
T ss_dssp HHHTTTCHHHHHHHHHTTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHH--TTCHHHHHHTTSTT
T ss_pred HHHhcCCHHHHHHHHHcCChHHHHHHHHcc-CCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH--cCChhHHHHHhccc
Confidence 888774 67899999999999999999863 12478999999999999875332 24567777 89999999999987
Q ss_pred C-HHHHHHHHHHHHHHhhC
Q 021242 280 S-AKGKTKAVALLKILVDD 297 (315)
Q Consensus 280 ~-~~~k~~A~~~L~~l~~~ 297 (315)
+ +.+++.|+++|.++..+
T Consensus 368 ~~~~v~~~a~~~l~nl~~~ 386 (529)
T 1jdh_A 368 SHWPLIKATVGLIRNLALC 386 (529)
T ss_dssp CCHHHHHHHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHhcC
Confidence 5 69999999999999864
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-26 Score=218.25 Aligned_cols=284 Identities=16% Similarity=0.170 Sum_probs=235.1
Q ss_pred hhhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHh-CCCHHHHHHHHcCC-CHHHHHHHHHHHHhcCcccc
Q 021242 3 VKRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISE-AGSIPYLAEILYSS-SHAFQENAAATLLNLSITSR 80 (315)
Q Consensus 3 ~~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~la~~~~ 80 (315)
...+.++.|+.+|+++++.+|..|+..|.+++.+ +.++..+.. .|+++.|+++|.+. +++++..|+.+|.+++.+++
T Consensus 14 ~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~-~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~ 92 (529)
T 1jdh_A 14 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE 92 (529)
T ss_dssp ---CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTS-HHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHH
T ss_pred hhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcC-CccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCch
Confidence 4567899999999999999999999999999976 567777776 59999999999754 89999999999999998865
Q ss_pred -hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcC-CCchhhhhhccccHHHHHHHhhccCCChHHHHHHHH
Q 021242 81 -DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVV-DSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALK 158 (315)
Q Consensus 81 -~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~ 158 (315)
+..+.+.|+++.|+.+|++ ++++++..++++|.+|+.. ++.+..+.+. |++|.|+.++. +++++++..++.
T Consensus 93 ~~~~i~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~ll~--~~~~~~~~~~~~ 165 (529)
T 1jdh_A 93 GLLAIFKSGGIPALVKMLGS----PVDSVLFYAITTLHNLLLHQEGAKMAVRLA-GGLQKMVALLN--KTNVKFLAITTD 165 (529)
T ss_dssp HHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHHHHCTTHHHHHHHH-THHHHHHHGGG--CCCHHHHHHHHH
T ss_pred hHHHHHHcCCHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCcchHHHHHHc-CCHHHHHHHHh--cCCHHHHHHHHH
Confidence 4456688999999999997 6789999999999999975 4567777665 55999999999 568899999999
Q ss_pred HHHHhcc-CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCC-----
Q 021242 159 ALFGIAL-YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGT----- 232 (315)
Q Consensus 159 aL~~Ls~-~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~----- 232 (315)
+|.+++. +++++..+++.|+++.|++++.+.......+.++.+|.+|+.+++++..+.+.|+++.|+.++.+++
T Consensus 166 ~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~ 245 (529)
T 1jdh_A 166 CLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQ 245 (529)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHH
Confidence 9999998 4678888999999999999997544445677789999999999999999988887777766654320
Q ss_pred -------------------------------CCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhh-C-
Q 021242 233 -------------------------------GSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQN-G- 279 (315)
Q Consensus 233 -------------------------------~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~-~- 279 (315)
..++.+++.++++|++++..+ ++.+..+.+ .|+++.|+.++.+ +
T Consensus 246 ~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~--~~~v~~L~~ll~~~~~ 322 (529)
T 1jdh_A 246 NCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN-YKNKMMVCQ--VGGIEALVRTVLRAGD 322 (529)
T ss_dssp HHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTC-HHHHHHHHH--TTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHH--cCChHHHHHHHHccCC
Confidence 126678888888899987643 456677877 8999999999986 3
Q ss_pred CHHHHHHHHHHHHHHhhC
Q 021242 280 SAKGKTKAVALLKILVDD 297 (315)
Q Consensus 280 ~~~~k~~A~~~L~~l~~~ 297 (315)
++.++..|..+|.++...
T Consensus 323 ~~~v~~~a~~~L~nl~~~ 340 (529)
T 1jdh_A 323 REDITEPAICALRHLTSR 340 (529)
T ss_dssp CHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 489999999999999653
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.1e-26 Score=223.75 Aligned_cols=282 Identities=20% Similarity=0.189 Sum_probs=236.7
Q ss_pred hhHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc--hh
Q 021242 6 RTVRSLVTKLGSV-SEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR--DS 82 (315)
Q Consensus 6 ~~i~~Lv~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~--~~ 82 (315)
+.++.|++.|.++ +++.+..|+.+|.+++.. ++++..+.+.|+||.|+.+|++.++.++..|+++|.+++.+.+ +.
T Consensus 56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~ 134 (644)
T 2z6h_A 56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 134 (644)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS-HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHH
T ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHH
Confidence 6799999999875 899999999999999976 5699999999999999999999999999999999999998753 44
Q ss_pred hhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc-CCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHH
Q 021242 83 LMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV-VDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALF 161 (315)
Q Consensus 83 ~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~ 161 (315)
.+.+.|+++.|+++|++ ++++.+..++.+|.+|+. .++++..+.+.++ ++.|+.+++++ .....+..++.+|+
T Consensus 135 ~v~~~g~i~~Lv~lL~~----~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~-v~~Lv~lL~~~-~~~~~~~~a~~~L~ 208 (644)
T 2z6h_A 135 AVRLAGGLQKMVALLNK----TNVKFLAITTDCLQILAYGNQESKLIILASGG-PQALVNIMRTY-TYEKLLWTTSRVLK 208 (644)
T ss_dssp HHHHTTHHHHHHHGGGC----CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH-HHHHHHHHTTC-CCHHHHHHHHHHHH
T ss_pred HHHHCCChHHHHHHHCc----CCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCC-hHHHHHHHHcC-ChHHHHHHHHHHHH
Confidence 56689999999999997 577888888899999996 6778888888655 99999999853 45677889999999
Q ss_pred HhccCCCcHHHHHhhCCcHHHHHHHhc--------------------------------------CCCcchHHHHHHHHH
Q 021242 162 GIALYPLNRYQVIALGGVQPLFSLVVN--------------------------------------GGRAGIVEDASAVIA 203 (315)
Q Consensus 162 ~Ls~~~~~~~~i~~~g~v~~L~~lL~~--------------------------------------~~~~~~~~~a~~~L~ 203 (315)
||+.+++++..+++.|+++.|++++.+ +++..+++.++++|.
T Consensus 209 nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~ 288 (644)
T 2z6h_A 209 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILS 288 (644)
T ss_dssp HHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999999999999999988887766532 234556777888888
Q ss_pred HHhcC-hhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCH-H-HHHHHHHHccCcHHHHHHHHhhCC
Q 021242 204 QIAGC-EESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGE-R-AAEEVKEMAMQVADGIADVAQNGS 280 (315)
Q Consensus 204 ~L~~~-~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~-~-~~~~i~~~~~g~~~~L~~ll~~~~ 280 (315)
+|+.. +++++.+.+.|+++.|+.++... .....+++.++++|.+|+....+ . .+..++. .|+++.|+.++++++
T Consensus 289 ~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~-~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~--~~~l~~L~~lL~~~~ 365 (644)
T 2z6h_A 289 NLTCNNYKNKMMVCQVGGIEALVRTVLRA-GDREDITEPAICALRHLTSRHQEAEMAQNAVRL--HYGLPVVVKLLHPPS 365 (644)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHH--TTHHHHHHHTTSTTC
T ss_pred HHHcCCHHHHHHHHHcCCHHHHHHHHHcc-CCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHH--ccChHHHHHHhCccC
Confidence 88774 57888899989999999999863 11379999999999999864332 2 2344666 899999999999874
Q ss_pred -HHHHHHHHHHHHHHhhC
Q 021242 281 -AKGKTKAVALLKILVDD 297 (315)
Q Consensus 281 -~~~k~~A~~~L~~l~~~ 297 (315)
+.+++.|+++|.++..+
T Consensus 366 ~~~v~~~a~~~L~nLa~~ 383 (644)
T 2z6h_A 366 HWPLIKATVGLIRNLALC 383 (644)
T ss_dssp CHHHHHHHHHHHHHHTTS
T ss_pred chHHHHHHHHHHHHHccC
Confidence 79999999999999764
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-26 Score=199.73 Aligned_cols=235 Identities=19% Similarity=0.225 Sum_probs=207.0
Q ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHhcCccc-c-hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc-CC
Q 021242 47 AGSIPYLAEILYSSSHAFQENAAATLLNLSITS-R-DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV-VD 123 (315)
Q Consensus 47 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~-~-~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~-~~ 123 (315)
....+.++++|++++++++..|+++|.++.... + ...+.+.|+++.|+.+|++ ++++++..++++|.+|+. .+
T Consensus 11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~ 86 (252)
T 4db8_A 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSS----PNEQILQEALWALSNIASGGN 86 (252)
T ss_dssp TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGC----SCHHHHHHHHHHHHHHTTSCH
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCH
Confidence 456899999999999999999999997765543 3 4456789999999999997 678999999999999997 66
Q ss_pred CchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcH-HHHHhhCCcHHHHHHHhcCCCcchHHHHHHHH
Q 021242 124 SYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNR-YQVIALGGVQPLFSLVVNGGRAGIVEDASAVI 202 (315)
Q Consensus 124 ~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~-~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L 202 (315)
+++..+.+. |+++.|+.++. ++++.++..|+++|.||+.+++++ ..+++.|+++.|+++|. +++..++..++++|
T Consensus 87 ~~~~~i~~~-g~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L 162 (252)
T 4db8_A 87 EQIQAVIDA-GALPALVQLLS--SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWAL 162 (252)
T ss_dssp HHHHHHHHT-THHHHHHHGGG--CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGG-CSCHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCHHHHHHHHc--CCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHh-CCCHHHHHHHHHHH
Confidence 788888876 55999999999 568999999999999999999888 78889999999999996 56788999999999
Q ss_pred HHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCH
Q 021242 203 AQIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSA 281 (315)
Q Consensus 203 ~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~ 281 (315)
.+|+. .++.+..+.+.|+++.|+.++.++ ++.+++.++++|.+++.. .+..+..+++ .|+++.|+.+++++++
T Consensus 163 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~---~~~v~~~a~~~L~~l~~~-~~~~~~~~~~--~g~i~~L~~ll~~~~~ 236 (252)
T 4db8_A 163 SNIASGGNEQIQAVIDAGALPALVQLLSSP---NEQILQEALWALSNIASG-GNEQKQAVKE--AGALEKLEQLQSHENE 236 (252)
T ss_dssp HHHTTSCHHHHHHHHHTTCHHHHHHGGGCS---SHHHHHHHHHHHHHHTTS-CHHHHHHHHH--TTHHHHHHTTTTCSSS
T ss_pred HHHHcCChHHHHHHHHCCCHHHHHHHHCCC---CHHHHHHHHHHHHHHhcC-CHHHHHHHHH--CCcHHHHHHHhCCCCH
Confidence 99998 567788888899999999999976 899999999999999864 3456678887 9999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 021242 282 KGKTKAVALLKILV 295 (315)
Q Consensus 282 ~~k~~A~~~L~~l~ 295 (315)
.+++.|.++|.++.
T Consensus 237 ~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 237 KIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHTHHHHHHTTC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998875
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-25 Score=220.35 Aligned_cols=284 Identities=17% Similarity=0.179 Sum_probs=236.3
Q ss_pred hhhhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHh-CCCHHHHHHHHcCC-CHHHHHHHHHHHHhcCccc
Q 021242 2 EVKRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISE-AGSIPYLAEILYSS-SHAFQENAAATLLNLSITS 79 (315)
Q Consensus 2 ~~~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~la~~~ 79 (315)
+...+.++.|+.+|+++++.+|..|+.+|.+++.++ .++..+.. .|+++.|+++|.+. +++++..|+.+|.+++.+.
T Consensus 10 ~~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~-~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~ 88 (644)
T 2z6h_A 10 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR 88 (644)
T ss_dssp --CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTST-THHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSH
T ss_pred hhhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC-hhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh
Confidence 345678999999999999999999999999999775 57777776 49999999999865 8899999999999999886
Q ss_pred c-hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcC-CCchhhhhhccccHHHHHHHhhccCCChHHHHHHH
Q 021242 80 R-DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVV-DSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDAL 157 (315)
Q Consensus 80 ~-~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~ 157 (315)
+ +..+.+.|+++.|+.+|++ ++++++..|+++|.+|+.. ++.+..+.+. |+++.|+.+++ ++++.++..++
T Consensus 89 ~~~~~i~~~g~i~~Lv~lL~~----~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~-g~i~~Lv~lL~--~~~~~~~~~a~ 161 (644)
T 2z6h_A 89 EGLLAIFKSGGIPALVKMLGS----PVDSVLFYAITTLHNLLLHQEGAKMAVRLA-GGLQKMVALLN--KTNVKFLAITT 161 (644)
T ss_dssp HHHHHHHTTTHHHHHHHHTTC----SSHHHHHHHHHHHHHHHHHSTTHHHHHHHT-THHHHHHHGGG--CCCHHHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHhC----CCHHHHHHHHHHHHHHHhCcchhHHHHHHC-CChHHHHHHHC--cCCHHHHHHHH
Confidence 5 4456688999999999997 6789999999999999975 4556666665 55999999999 55788888899
Q ss_pred HHHHHhcc-CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCC----
Q 021242 158 KALFGIAL-YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGT---- 232 (315)
Q Consensus 158 ~aL~~Ls~-~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~---- 232 (315)
.+|.+|+. +++++..+++.|+++.|++++.+......++.++.+|.+|+.+++++..+++.|+++.|+.++..++
T Consensus 162 ~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~ 241 (644)
T 2z6h_A 162 DCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLV 241 (644)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHH
Confidence 99999997 6788999999999999999997433456678899999999999999999998887777766554320
Q ss_pred --------------------------------CCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhh-C
Q 021242 233 --------------------------------GSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQN-G 279 (315)
Q Consensus 233 --------------------------------~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~-~ 279 (315)
..+..+++.++++|.+|+..+ +..+..+.+ .|+++.|+.++.+ +
T Consensus 242 ~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~-~~~~~~v~~--~g~v~~Lv~lL~~~~ 318 (644)
T 2z6h_A 242 QNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN-YKNKMMVCQ--VGGIEALVRTVLRAG 318 (644)
T ss_dssp HHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHH--TTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHH--cCCHHHHHHHHHccC
Confidence 125677888888888887643 456677777 8999999999987 3
Q ss_pred C-HHHHHHHHHHHHHHhh
Q 021242 280 S-AKGKTKAVALLKILVD 296 (315)
Q Consensus 280 ~-~~~k~~A~~~L~~l~~ 296 (315)
+ +.++..|..+|.++..
T Consensus 319 ~~~~v~~~a~~aL~nL~~ 336 (644)
T 2z6h_A 319 DREDITEPAICALRHLTS 336 (644)
T ss_dssp TCHHHHHHHHHHHHHHTS
T ss_pred CcHHHHHHHHHHHHHHhc
Confidence 3 8999999999999974
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-26 Score=198.38 Aligned_cols=199 Identities=14% Similarity=0.100 Sum_probs=172.6
Q ss_pred hhhHHHHHHHhCCCCH--HHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCccc-c-
Q 021242 5 RRTVRSLVTKLGSVSE--QTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITS-R- 80 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~--~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~-~- 80 (315)
+..+|.+|++|+++++ +.|..|+++|.+++..++++|..+++.|+||+|+++|++.++++|+.|+++|+|++.++ +
T Consensus 7 ~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 7 EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred hccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 5689999999999988 89999999999999888999999999999999999999999999999999999999864 4
Q ss_pred hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhcc--------------
Q 021242 81 DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTR-------------- 146 (315)
Q Consensus 81 ~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~-------------- 146 (315)
+..+.+.|+||.|+++|++ .++.++++.++.+|++|+..+++|..|.+ +| +|+|++++..+
T Consensus 87 k~~I~~~GaI~~Lv~lL~~---~~~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~-i~~Lv~ll~~p~sG~~~~~~~~~~~ 161 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQ---TRDLETKKQITGLLWNLSSNDKLKNLMIT-EA-LLTLTENIIIPFSGWPEGDYPKANG 161 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHTSGGGHHHHHH-HH-HHHHCCCCCHHHHCCCGGGCCCCCT
T ss_pred HHHHHHcCCHHHHHHHHcc---CCCHHHHHHHHHHHHHHHcChhhHHHHHh-cc-HHHHHHHHhccccCCcccccccccc
Confidence 4567799999999999984 25789999999999999999999998887 46 99999865310
Q ss_pred CCChHHHHHHHHHHHHhcc-CCCcHHHHHhh-CCcHHHHHHHhcC-----CCcchHHHHHHHHHHHhcC
Q 021242 147 NSPLRSVKDALKALFGIAL-YPLNRYQVIAL-GGVQPLFSLVVNG-----GRAGIVEDASAVIAQIAGC 208 (315)
Q Consensus 147 ~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~-g~v~~L~~lL~~~-----~~~~~~~~a~~~L~~L~~~ 208 (315)
..++.++.+|+.+|+||+. ++++|..|.+. |+|+.|+.+++.. ++...+|.|+++|+|||..
T Consensus 162 ~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 162 LLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp TCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred cchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 1256899999999999998 55899999886 6789999999641 2456789999999999863
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.7e-26 Score=193.31 Aligned_cols=197 Identities=13% Similarity=0.170 Sum_probs=168.1
Q ss_pred CHHHHHHHHcCCCH--HHHHHHHHHHHhcCcccc--hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc-CC
Q 021242 49 SIPYLAEILYSSSH--AFQENAAATLLNLSITSR--DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV-VD 123 (315)
Q Consensus 49 ~i~~Lv~lL~~~~~--~~~~~a~~~L~~la~~~~--~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~-~~ 123 (315)
.||.|+++|+++++ +++..|+++|.+++.+++ +..+.+.|+||.|+++|++ +++++++.|+++|+||+. ++
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s----~~~~vq~~Aa~aL~nLa~~~~ 84 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV----QNEDVQRAVCGALRNLVFEDN 84 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGC----CCHHHHHHHHHHHHHHHTTCH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcC----CCHHHHHHHHHHHHHHHhCCH
Confidence 48999999999888 899999999999998753 4567799999999999997 789999999999999997 67
Q ss_pred CchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHh----cC----------
Q 021242 124 SYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVV----NG---------- 189 (315)
Q Consensus 124 ~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~----~~---------- 189 (315)
+++..|.+.|| ||+|+++|.+ .++..+++.|+.+||||+..+++|..+++ +++++|++++. ..
T Consensus 85 ~nk~~I~~~Ga-I~~Lv~lL~~-~~~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~ 161 (233)
T 3tt9_A 85 DNKLEVAELNG-VPRLLQVLKQ-TRDLETKKQITGLLWNLSSNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANG 161 (233)
T ss_dssp HHHHHHHHTTH-HHHHHHHHHH-CCCHHHHHHHHHHHHHHHTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCT
T ss_pred HHHHHHHHcCC-HHHHHHHHcc-CCCHHHHHHHHHHHHHHHcChhhHHHHHh-ccHHHHHHHHhccccCCcccccccccc
Confidence 89999998755 9999999984 35789999999999999999999999886 46999987652 00
Q ss_pred -CCcchHHHHHHHHHHHhc-ChhhHHHHHhcCC-HHHHHHHhhcC---CCCChhHHHHHHHHHHHHhcc
Q 021242 190 -GRAGIVEDASAVIAQIAG-CEESVDEFKKCCG-IGVLVDLLDLG---TGSGHRVKENAVSALLNLVNF 252 (315)
Q Consensus 190 -~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~-i~~Lv~ll~~~---~~~~~~~~~~a~~~L~~l~~~ 252 (315)
.+..+++.|.++|+||+. ++++|+.+.+.+| |+.|+.+++.+ ...+.+.+|+|+++|+|||..
T Consensus 162 ~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 162 LLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp TCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred cchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 134678999999999987 6799999998866 89999999863 234678999999999999863
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.8e-24 Score=214.72 Aligned_cols=281 Identities=18% Similarity=0.185 Sum_probs=235.2
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc--hh
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR--DS 82 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~--~~ 82 (315)
.+.++.|+.+|.++++..+..|+++|.+++..... .....+++|.|+.+|++.++.+++.|+++|.+++.++. +.
T Consensus 359 ~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~---~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~ 435 (780)
T 2z6g_A 359 AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK---QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKM 435 (780)
T ss_dssp TTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTT---CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred hchHHHHHHHHcCCchHHHHHHHHHHHHHhccchh---hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 45689999999999999999999999999966432 11235789999999999999999999999999999863 45
Q ss_pred hhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCc----hhhhhhccccHHHHHHHhhccCCChHHHHHHHH
Q 021242 83 LMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSY----RPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALK 158 (315)
Q Consensus 83 ~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~----~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~ 158 (315)
.+.+.|+++.|+.+|.+. ....+++..++++|.+|+..... +..+...++ ++.|+.+|.++ .++.++..|++
T Consensus 436 ~i~~~g~i~~Lv~lL~~~--~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~-l~~L~~lL~~~-~~~~v~~~A~~ 511 (780)
T 2z6g_A 436 MVCQVGGIEALVRTVLRA--GDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYG-LPVVVKLLHPP-SHWPLIKATVG 511 (780)
T ss_dssp HHHTTTHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTC-HHHHHHTTSTT-CCHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHcc--CCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCC-HHHHHHHhcCC-ChHHHHHHHHH
Confidence 566899999999999752 12358899999999999864332 445666545 99999999842 33589999999
Q ss_pred HHHHhccCCCcHHHHHhhCCcHHHHHHHhcCC---------------------CcchHHHHHHHHHHHhcChhhHHHHHh
Q 021242 159 ALFGIALYPLNRYQVIALGGVQPLFSLVVNGG---------------------RAGIVEDASAVIAQIAGCEESVDEFKK 217 (315)
Q Consensus 159 aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~---------------------~~~~~~~a~~~L~~L~~~~~~~~~i~~ 217 (315)
+|+||+.+++++..+++.|+++.|+++|.+.. ...+++.++++|.+|+.+++++..+.+
T Consensus 512 aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~ 591 (780)
T 2z6g_A 512 LIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRG 591 (780)
T ss_dssp HHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHH
Confidence 99999999888888889999999999996311 124567899999999999999999999
Q ss_pred cCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhC
Q 021242 218 CCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDD 297 (315)
Q Consensus 218 ~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~ 297 (315)
.|+++.|+.++.++ ++.++..++.+|.+++.. +..+..+.+ .|+++.|..+++++++.+|+.|.++|.++...
T Consensus 592 ~~~i~~Lv~lL~~~---~~~v~~~a~~aL~~L~~~--~~~~~~i~~--~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~ 664 (780)
T 2z6g_A 592 LNTIPLFVQLLYSP---IENIQRVAAGVLCELAQD--KEAAEAIEA--EGATAPLTELLHSRNEGVATYAAAVLFRMSED 664 (780)
T ss_dssp TCCHHHHHHGGGCS---CHHHHHHHHHHHHHHHTS--HHHHHHHHH--TTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHcCC---CHHHHHHHHHHHHHHhcC--HHHHHHHHH--CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 99999999999986 889999999999999853 456667776 99999999999999999999999999999886
Q ss_pred CC
Q 021242 298 GN 299 (315)
Q Consensus 298 ~~ 299 (315)
..
T Consensus 665 ~~ 666 (780)
T 2z6g_A 665 KP 666 (780)
T ss_dssp SC
T ss_pred Ch
Confidence 54
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-24 Score=216.09 Aligned_cols=276 Identities=16% Similarity=0.177 Sum_probs=236.3
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHh-CCCHHHHHHHHcCC-CHHHHHHHHHHHHhcCcccc-h
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISE-AGSIPYLAEILYSS-SHAFQENAAATLLNLSITSR-D 81 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~la~~~~-~ 81 (315)
.+.++.|+.+|.++++.+|..|+.+|.+++.+ ..++..+.+ .|+|+.|+.+|++. ++.++..|+.+|.+++.+.. +
T Consensus 149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~-~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~ 227 (780)
T 2z6g_A 149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGL 227 (780)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTS-HHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHH
T ss_pred hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCC-ChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhH
Confidence 56899999999999999999999999999976 467777776 48999999999764 89999999999999998865 3
Q ss_pred hhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcC-CCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHH
Q 021242 82 SLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVV-DSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKAL 160 (315)
Q Consensus 82 ~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL 160 (315)
..+.+.|+++.|+.+|++ +++.++..|+++|.+|+.. ++.+..+.+. |+++.|+.++. ..+..++..++.+|
T Consensus 228 ~~i~~~g~I~~Lv~lL~~----~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~-g~v~~Lv~lL~--~~~~~v~~~a~~aL 300 (780)
T 2z6g_A 228 LAIFKSGGIPALVNMLGS----PVDSVLFHAITTLHNLLLHQEGAKMAVRLA-GGLQKMVALLN--KTNVKFLAITTDCL 300 (780)
T ss_dssp HHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHHHHSTTHHHHHHHT-THHHHHHHGGG--CCCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHcC----CCHHHHHHHHHHHHHHhCCChhhHHHHHHc-CCHHHHHHHHh--cCCHHHHHHHHHHH
Confidence 455678999999999997 6789999999999999975 5566666665 55999999999 56888889999999
Q ss_pred HHhcc-CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHH
Q 021242 161 FGIAL-YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVK 239 (315)
Q Consensus 161 ~~Ls~-~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~ 239 (315)
.+++. +++++..+++.|+++.|++++.+.......+.++.+|.+|+.++.++..+++.|+++.|+.++.++ +..++
T Consensus 301 ~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~---~~~~~ 377 (780)
T 2z6g_A 301 QILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP---SQRLV 377 (780)
T ss_dssp HHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCS---CHHHH
T ss_pred HHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCC---chHHH
Confidence 99997 567888899999999999999743334456779999999999999999999999999999999875 78899
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhC
Q 021242 240 ENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDD 297 (315)
Q Consensus 240 ~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~ 297 (315)
+.++++|.+++...... ... .++++.|+.++.+.++.++..|+++|.+|...
T Consensus 378 ~~a~~~L~~L~~~~~~~----~~~--~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~ 429 (780)
T 2z6g_A 378 QNCLWTLRNLSDAATKQ----EGM--EGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 429 (780)
T ss_dssp HHHHHHHHHHHTTCTTC----SCC--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHhccchhh----hhh--hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 99999999999754321 112 56899999999999999999999999999764
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=99.92 E-value=4.1e-24 Score=179.97 Aligned_cols=195 Identities=18% Similarity=0.228 Sum_probs=172.7
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc--hh
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR--DS 82 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~--~~ 82 (315)
....+.|+.+|+++++++|..|+++|.+++..+++++..+.+.|++|.|+++|++.++.+++.|+++|.|++.+++ +.
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 4567899999999999999999999999998888999999999999999999999999999999999999997653 45
Q ss_pred hhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcC-CCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHH
Q 021242 83 LMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVV-DSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALF 161 (315)
Q Consensus 83 ~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~ 161 (315)
.+.+.|+++.|+.+|++ +++.++..++++|.+|+.. ++.+..+.+. |+++.|+.++. ++++.++..|+++|+
T Consensus 91 ~i~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~ll~--~~~~~v~~~a~~aL~ 163 (210)
T 4db6_A 91 AVIDAGALPALVQLLSS----PNEQILQEALWALSNIASGGNEQIQAVIDA-GALPALVQLLS--SPNEQILQEALWALS 163 (210)
T ss_dssp HHHHTTCHHHHHHHTTC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHT-THHHHHHHHTT--CSCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcC----CcHHHHHHHHHHHHHHHcCCHHHHHHHHHc-CcHHHHHHHHc--CCCHHHHHHHHHHHH
Confidence 56799999999999997 6889999999999999964 4455566664 56999999999 568999999999999
Q ss_pred HhccC-CCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc
Q 021242 162 GIALY-PLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG 207 (315)
Q Consensus 162 ~Ls~~-~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~ 207 (315)
||+.+ ++++..+++.|+++.|++++. +++..+++.|+++|.+|+.
T Consensus 164 ~l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 164 NIASGGNEQKQAVKEAGALEKLEQLQS-HENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHTSCHHHHHHHHHTTHHHHHHHGGG-CSCHHHHHHHHHHHHHHCC
T ss_pred HHHcCCcHHHHHHHHCCCHHHHHHHHh-CCCHHHHHHHHHHHHHHhc
Confidence 99996 677788889999999999996 5778899999999999975
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.4e-24 Score=208.16 Aligned_cols=285 Identities=14% Similarity=0.130 Sum_probs=229.7
Q ss_pred hhHHHHHHHhCC-CCHHHHHHHHHHHHHHhccCch--------------------------------------hhHHHHh
Q 021242 6 RTVRSLVTKLGS-VSEQTRAEALAELRLLSKHDAE--------------------------------------IRPMISE 46 (315)
Q Consensus 6 ~~i~~Lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~--------------------------------------~~~~i~~ 46 (315)
..++.|+++++. .+......++..|.|++...+. +++.+.+
T Consensus 376 ~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~e 455 (778)
T 3opb_A 376 SFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILR 455 (778)
T ss_dssp HHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHH
Confidence 458889999985 6668999999999999863321 5678889
Q ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc-hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCc
Q 021242 47 AGSIPYLAEILYSSSHAFQENAAATLLNLSITSR-DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSY 125 (315)
Q Consensus 47 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~-~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~ 125 (315)
.|+||+|+.++++.++.+++.|+++|.|++.+.+ +..+.+.|+++.|+.+|.+++.. ....+..|+.+|.+|+.+.+.
T Consensus 456 aGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~-~~~~k~~AA~ALArLlis~np 534 (778)
T 3opb_A 456 TELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDI-GEPIRILGCRALTRMLIFTNP 534 (778)
T ss_dssp TTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC----CCHHHHHHHHHHHHHHHTSCH
T ss_pred CcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCc-chHHHHHHHHHHHHHHhcCCH
Confidence 9999999999999999999999999999998865 45667999999999999873110 013789999999999976665
Q ss_pred hhhhhh--ccccHHHHHHHhhccCCC-----------h-HHHHHHHHHHHHhccCCC-----cHHHHHhh-CCcHHHHHH
Q 021242 126 RPIIGA--KRDIIHSLIEIIKTRNSP-----------L-RSVKDALKALFGIALYPL-----NRYQVIAL-GGVQPLFSL 185 (315)
Q Consensus 126 ~~~i~~--~~g~i~~Lv~ll~~~~~~-----------~-~~~~~a~~aL~~Ls~~~~-----~~~~i~~~-g~v~~L~~l 185 (315)
...+.. ..|+|++|+.+|....+. + --+.+|+.+|.||+..++ .+..+++. |+++.+..+
T Consensus 535 ~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~L 614 (778)
T 3opb_A 535 GLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENL 614 (778)
T ss_dssp HHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHG
T ss_pred HHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHH
Confidence 555531 126699999999821111 1 126789999999999874 37788885 999999999
Q ss_pred HhcCCCcchHHHHHHHHHHHhcChhhH-HHHHhcC------CHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHH
Q 021242 186 VVNGGRAGIVEDASAVIAQIAGCEESV-DEFKKCC------GIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAA 258 (315)
Q Consensus 186 L~~~~~~~~~~~a~~~L~~L~~~~~~~-~~i~~~~------~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 258 (315)
|. +++..++..|+++++||+.+++++ +.+.+.+ +++.|+.++..+ +..+|..|+++|.+++... +..+
T Consensus 615 L~-s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~---D~~~r~AAagALAnLts~~-~~ia 689 (778)
T 3opb_A 615 ML-DENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLS---DVESQRAVAAIFANIATTI-PLIA 689 (778)
T ss_dssp GG-CSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCS---CHHHHHHHHHHHHHHHHHC-HHHH
T ss_pred Hh-CCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCC---CHHHHHHHHHHHHHhcCCC-hHHH
Confidence 97 457788999999999999998876 4554322 488999999875 8999999999999997533 4577
Q ss_pred HHHHHHccCcHHHHHHHHhh--CCHHHHHHHHHHHHHHhhC
Q 021242 259 EEVKEMAMQVADGIADVAQN--GSAKGKTKAVALLKILVDD 297 (315)
Q Consensus 259 ~~i~~~~~g~~~~L~~ll~~--~~~~~k~~A~~~L~~l~~~ 297 (315)
+.+++ ..++++.++.+++. +++.++..+..++.++.+.
T Consensus 690 ~~ll~-~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 690 KELLT-KKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp HHHTT-CHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHH-ccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 88887 24899999999999 8999999999999999974
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=99.91 E-value=5e-23 Score=173.28 Aligned_cols=197 Identities=19% Similarity=0.226 Sum_probs=171.9
Q ss_pred hcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc-CCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhc
Q 021242 86 TRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV-VDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIA 164 (315)
Q Consensus 86 ~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls 164 (315)
..++.+.|..+|++ ++++++..|+++|.+|+. .++++..+.+. |+++.|+.+|. ++++.++..|+++|.||+
T Consensus 10 ~~~~~~~l~~LL~s----~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~lL~--~~~~~v~~~a~~~L~~l~ 82 (210)
T 4db6_A 10 HGSELPQMVQQLNS----PDQQELQSALRKLSQIASGGNEQIQAVIDA-GALPALVQLLS--SPNEQILQEALWALSNIA 82 (210)
T ss_dssp ---CHHHHHHHTTC----SCHHHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTT--CSCHHHHHHHHHHHHHHT
T ss_pred ccchhHHHHHHhcC----CCHHHHHHHHHHHHHHHcCCHHHHHHHHHc-CCHHHHHHHHc--CCCHHHHHHHHHHHHHHh
Confidence 46788999999997 789999999999999994 56677777775 55999999999 568999999999999999
Q ss_pred c-CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHH
Q 021242 165 L-YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENA 242 (315)
Q Consensus 165 ~-~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a 242 (315)
. +++++..+++.|+++.|+.+|. +++..+++.|+++|.||+. .++.++.+.+.|+++.|+++++++ +..+++.+
T Consensus 83 ~~~~~~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~---~~~v~~~a 158 (210)
T 4db6_A 83 SGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP---NEQILQEA 158 (210)
T ss_dssp TSCHHHHHHHHHTTCHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS---CHHHHHHH
T ss_pred cCCcHHHHHHHHCCCHHHHHHHHc-CCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC---CHHHHHHH
Confidence 6 5678888999999999999996 5678899999999999996 567778888899999999999976 88999999
Q ss_pred HHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhh
Q 021242 243 VSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 243 ~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
+++|.+++..+ +..+..+.+ .|+++.|+.+++++++.+++.|.++|.+|..
T Consensus 159 ~~aL~~l~~~~-~~~~~~~~~--~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 159 LWALSNIASGG-NEQKQAVKE--AGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHTSC-HHHHHHHHH--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCC-cHHHHHHHH--CCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 99999999744 456677777 9999999999999999999999999999864
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.3e-21 Score=170.05 Aligned_cols=234 Identities=15% Similarity=0.119 Sum_probs=184.7
Q ss_pred HHHHHHHhCCC------------CHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHH-HHcCCCHHHHHHHHHHHHh
Q 021242 8 VRSLVTKLGSV------------SEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAE-ILYSSSHAFQENAAATLLN 74 (315)
Q Consensus 8 i~~Lv~~L~~~------------~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~a~~~L~~ 74 (315)
++..++.|.++ +.+.+..|+..|..++.. .++...+.+.|++|+|+. +|+++++.+++.|+++|.+
T Consensus 30 mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ 108 (296)
T 1xqr_A 30 MKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGT 108 (296)
T ss_dssp HHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45666777664 236899999999999965 678888999999999999 9999999999999999999
Q ss_pred cCcccc--hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc-CCCchhhhhhccccHHHHHHHhhccCCChH
Q 021242 75 LSITSR--DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV-VDSYRPIIGAKRDIIHSLIEIIKTRNSPLR 151 (315)
Q Consensus 75 la~~~~--~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~ 151 (315)
++.+++ +..+.+.|+++.|+.+|++ ..++.++..|+++|.+|+. +++....+.+.+| ++.|+.+|+ ++++.
T Consensus 109 ia~~n~~~~~~vv~~g~l~~Ll~LL~~---~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~gg-i~~L~~lL~--~~d~~ 182 (296)
T 1xqr_A 109 CSQNVAAIQEQVLGLGALRKLLRLLDR---DACDTVRVKALFAISCLVREQEAGLLQFLRLDG-FSVLMRAMQ--QQVQK 182 (296)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHHH---CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH-HHHHHHHHH--SSCHH
T ss_pred HHhCCHHHHHHHHHCCCHHHHHHHHcc---CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCC-HHHHHHHHc--CCCHH
Confidence 998864 4567799999999999986 1468899999999999996 4455666776555 999999999 56999
Q ss_pred HHHHHHHHHHHhcc-CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcC-hhhHHHHHhcC-CHHHH----
Q 021242 152 SVKDALKALFGIAL-YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGC-EESVDEFKKCC-GIGVL---- 224 (315)
Q Consensus 152 ~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~-~i~~L---- 224 (315)
++..|+++|.+|+. +++.+..+++.|+++.|+.+|. +++..+++.++.+|.+|+.. +..+..+.... .+..+
T Consensus 183 v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~-~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~ 261 (296)
T 1xqr_A 183 LKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVR-TEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHR 261 (296)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHT-SCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHc-CCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHH
Confidence 99999999999998 5678889999999999999996 57889999999999999876 44444443221 23222
Q ss_pred HHHhhcCCCCChhHHHHHHHHHHHHh
Q 021242 225 VDLLDLGTGSGHRVKENAVSALLNLV 250 (315)
Q Consensus 225 v~ll~~~~~~~~~~~~~a~~~L~~l~ 250 (315)
.+.++.. ....+..+.+..++.+..
T Consensus 262 ~~~lq~~-e~~~e~~~~~~~il~~~f 286 (296)
T 1xqr_A 262 CQLLQQH-EEYQEELEFCEKLLQTCF 286 (296)
T ss_dssp HHHHTTC-GGGHHHHHHHHHHHHHHC
T ss_pred HHHccch-HHHHHHHHHHHHHHHHHc
Confidence 2333322 113566667777777664
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-20 Score=181.77 Aligned_cols=277 Identities=11% Similarity=0.129 Sum_probs=219.7
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHh-CCCHHHHHHHHcC-CCHHHHHHHHHHHHhcCcccc---
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISE-AGSIPYLAEILYS-SSHAFQENAAATLLNLSITSR--- 80 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~la~~~~--- 80 (315)
.-.+.++++|..++.+.+..|++.|+-++.. ++.|..+++ .|+++.|++++++ .+..+.--++.+|.||+...+
T Consensus 334 ~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~-~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~ 412 (778)
T 3opb_A 334 QLSEIFINAISRRIVPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXX 412 (778)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS-SHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCC
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHhCC-HHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccc
Confidence 3566788888888777799999999999865 788999998 5669999999985 677788889999999987421
Q ss_pred ------------------------------------h-hhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCC
Q 021242 81 ------------------------------------D-SLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVD 123 (315)
Q Consensus 81 ------------------------------------~-~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~ 123 (315)
+ +.+.+.|+++.|+.++++ +++.+++.++++|.+|+..+
T Consensus 413 ~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S----~s~~~re~A~~aL~nLS~d~ 488 (778)
T 3opb_A 413 XXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHN----LSPNCKQQVVRIIYNITRSK 488 (778)
T ss_dssp CCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGG----SCHHHHHHHHHHHHHHHTSG
T ss_pred hhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcC----CCHHHHHHHHHHHHHHcCCH
Confidence 1 245689999999999997 78899999999999999999
Q ss_pred CchhhhhhccccHHHHHHHhhccCCChH---HHHHHHHHHHHhccCCCcHHHHH--h-hCCcHHHHHHHhcCCCcc----
Q 021242 124 SYRPIIGAKRDIIHSLIEIIKTRNSPLR---SVKDALKALFGIALYPLNRYQVI--A-LGGVQPLFSLVVNGGRAG---- 193 (315)
Q Consensus 124 ~~~~~i~~~~g~i~~Lv~ll~~~~~~~~---~~~~a~~aL~~Ls~~~~~~~~i~--~-~g~v~~L~~lL~~~~~~~---- 193 (315)
++|..+.+.|| +++|+.++.+ ++.. .+..|+.+|.+|..+.+....+- . .|++++|+.+|..++...
T Consensus 489 ~~R~~lvqqGa-l~~LL~lL~s--~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l 565 (778)
T 3opb_A 489 NFIPQLAQQGA-VKIILEYLAN--KQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPL 565 (778)
T ss_dssp GGHHHHHHTTH-HHHHHHHTTC--C---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC-
T ss_pred HHHHHHHHCCC-HHHHHHHHhc--CCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccc
Confidence 99999998655 9999999984 4333 78899999999997555444321 1 399999999995222211
Q ss_pred --------h-HHHHHHHHHHHhcCh-----hhHHHHHhc-CCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHH
Q 021242 194 --------I-VEDASAVIAQIAGCE-----ESVDEFKKC-CGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAA 258 (315)
Q Consensus 194 --------~-~~~a~~~L~~L~~~~-----~~~~~i~~~-~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 258 (315)
. +..|+.+|.||+..+ +.|+.++.+ |+++.+..+|.++ +..++..|+++++||+.+. ...
T Consensus 566 ~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~---n~~VrrAA~elI~NL~~~~--e~i 640 (778)
T 3opb_A 566 HNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDE---NVPLQRSTLELISNMMSHP--LTI 640 (778)
T ss_dssp --CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCS---SHHHHHHHHHHHHHHHTSG--GGT
T ss_pred cccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCC---CHHHHHHHHHHHHHHhCCc--HHH
Confidence 1 567999999999875 457888885 8899999999875 8899999999999999642 221
Q ss_pred -HHHHHH----ccCcHHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 021242 259 -EEVKEM----AMQVADGIADVAQNGSAKGKTKAVALLKILV 295 (315)
Q Consensus 259 -~~i~~~----~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~ 295 (315)
+++... ..+.++.|+.+++++++.+|+.|+++|.++.
T Consensus 641 ~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLt 682 (778)
T 3opb_A 641 AAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIA 682 (778)
T ss_dssp GGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 233210 0234889999999999999999999999995
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=7.2e-21 Score=168.59 Aligned_cols=183 Identities=15% Similarity=0.110 Sum_probs=160.7
Q ss_pred HHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHH-HhhccCCChHHHHHHHHHHHHhccC-CCcHHHHHhhCCcHHHH
Q 021242 106 SAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIE-IIKTRNSPLRSVKDALKALFGIALY-PLNRYQVIALGGVQPLF 183 (315)
Q Consensus 106 ~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~-ll~~~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~v~~L~ 183 (315)
.+.+..|+..|.++....++...+...|| +|+|+. +|. ++++.++..|+++|.+++.+ ++.+..+++.|++|.|+
T Consensus 54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~-l~~Lv~~lL~--s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll 130 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDNAADFCQLSG-MHLLVGRYLE--AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL 130 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTTH-HHHHHHTTTT--CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHcCC-HHHHHHHHHc--CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHH
Confidence 45677899999999987778887877656 899999 999 56899999999999999985 56778889999999999
Q ss_pred HHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHH
Q 021242 184 SLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVK 262 (315)
Q Consensus 184 ~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~ 262 (315)
++|.++++..+++.|+++|+|++. .+...+.|.+.||++.|+.+|+++ +..++..++++|.+++..+ ++.+..++
T Consensus 131 ~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~---d~~v~~~A~~aLs~L~~~~-~~~~~~vv 206 (296)
T 1xqr_A 131 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ---VQKLKVKSAFLLQNLLVGH-PEHKGTLC 206 (296)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS---CHHHHHHHHHHHHHHHHHC-GGGHHHHH
T ss_pred HHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC---CHHHHHHHHHHHHHHHhCC-hHHHHHHH
Confidence 999754567889999999999987 577788899999999999999986 8999999999999999764 45668888
Q ss_pred HHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhC
Q 021242 263 EMAMQVADGIADVAQNGSAKGKTKAVALLKILVDD 297 (315)
Q Consensus 263 ~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~ 297 (315)
+ .|+++.|+.++.++++.+++.|..+|.++...
T Consensus 207 ~--~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 207 S--MGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp H--TTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred H--cCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 8 99999999999999999999999999888765
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=99.58 E-value=3.3e-13 Score=128.39 Aligned_cols=286 Identities=12% Similarity=0.105 Sum_probs=210.9
Q ss_pred hhhhhhHHHHHHHhCCC--CHHHHHHHHHHHHHHhccCch-----------------hhHHHH-hCCCHHHHHHHHcCCC
Q 021242 2 EVKRRTVRSLVTKLGSV--SEQTRAEALAELRLLSKHDAE-----------------IRPMIS-EAGSIPYLAEILYSSS 61 (315)
Q Consensus 2 ~~~~~~i~~Lv~~L~~~--~~~~~~~a~~~L~~l~~~~~~-----------------~~~~i~-~~g~i~~Lv~lL~~~~ 61 (315)
+|-..+++.|+.-|+.. |.++...++++|.++...++. +.+.+. +.+.|+.|+.+|++.+
T Consensus 56 ~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~d 135 (651)
T 3grl_A 56 EVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFD 135 (651)
T ss_dssp HHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCC
T ss_pred HhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCcc
Confidence 34566789999999754 789999999999887544322 223444 4788999999999999
Q ss_pred HHHHHHHHHHHHhcCcccc---hh-hhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHH
Q 021242 62 HAFQENAAATLLNLSITSR---DS-LMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIH 137 (315)
Q Consensus 62 ~~~~~~a~~~L~~la~~~~---~~-~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~ 137 (315)
..++.+++..|..++.+.+ .+ ++..++|++.|+.+|.+ .++.++..+...|.+|+.....-..+...+|+++
T Consensus 136 f~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d----~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe 211 (651)
T 3grl_A 136 FHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLAD----SREVIRNDGVLLLQALTRSNGAIQKIVAFENAFE 211 (651)
T ss_dssp HHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGC----SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhC----chHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHH
Confidence 9999999999999988763 23 34477999999999997 6778888999999999986665554555556699
Q ss_pred HHHHHhhccCC--ChHHHHHHHHHHHHhccC-CCcHHHHHhhCCcHHHHHHHhcCCCc-c----hHHH---HHHHHHHHh
Q 021242 138 SLIEIIKTRNS--PLRSVKDALKALFGIALY-PLNRYQVIALGGVQPLFSLVVNGGRA-G----IVED---ASAVIAQIA 206 (315)
Q Consensus 138 ~Lv~ll~~~~~--~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~v~~L~~lL~~~~~~-~----~~~~---a~~~L~~L~ 206 (315)
.|++++....+ .-.+...|+..|.||.++ +.|+..+.+.|.++.|..+|...++. . .... ++.+++-|.
T Consensus 212 ~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv 291 (651)
T 3grl_A 212 RLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLV 291 (651)
T ss_dssp HHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHh
Confidence 99999985311 125678999999999995 45888899999999999999532211 1 1222 666777775
Q ss_pred cC-------hhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccC---------cHH
Q 021242 207 GC-------EESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQ---------VAD 270 (315)
Q Consensus 207 ~~-------~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g---------~~~ 270 (315)
.. +.+...+.+.|+++.+++++... .....++..|+.++..+.+.+ ......+.+ .. ++.
T Consensus 292 ~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~-~~p~~i~~~Al~tla~~irgN-~~~Q~~fa~--~~vp~~~~~p~li~ 367 (651)
T 3grl_A 292 SPNNPPGATSSCQKAMFQCGLLQQLCTILMAT-GVPADILTETINTVSEVIRGC-QVNQDYFAS--VNAPSNPPRPAIVV 367 (651)
T ss_dssp CTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCS-SCCHHHHHHHHHHHHHHHTTC-HHHHHHHHH--CEESSSSCEEHHHH
T ss_pred CCCCCCCCCHHHHHHHHHCCCHHHHHHHHccC-CCCHHHHHHHHHHHHHHHhCC-HHHHHHHhh--ccCCCCCCcChHHH
Confidence 43 24677888889999999988753 346789999999999998744 445455554 22 233
Q ss_pred HHHHHHhh-CCHHHHHHHHHHHHHHh
Q 021242 271 GIADVAQN-GSAKGKTKAVALLKILV 295 (315)
Q Consensus 271 ~L~~ll~~-~~~~~k~~A~~~L~~l~ 295 (315)
.|+.++.+ ....+|-.|+..++++-
T Consensus 368 lL~~~~~~~~~~~lR~Aa~~cl~ay~ 393 (651)
T 3grl_A 368 LLMSMVNERQPFVLRCAVLYCFQCFL 393 (651)
T ss_dssp HHHHHTCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHH
Confidence 34444544 46788888888888775
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=99.58 E-value=2.8e-13 Score=128.89 Aligned_cols=280 Identities=15% Similarity=0.172 Sum_probs=210.7
Q ss_pred hhhhHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcC--CCHHHHHHHHHHHHhcCccc-
Q 021242 4 KRRTVRSLVTKLGSV-SEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYS--SSHAFQENAAATLLNLSITS- 79 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~~la~~~- 79 (315)
-..+|+.|...++++ -.+-|+.|+..|..+++. ++..+. .++++.|+..|+. .|.++...++.+|.++...+
T Consensus 19 ~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~~~Vg-~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~ 94 (651)
T 3grl_A 19 EAETIQKLCDRVASSTLLDDRRNAVRALKSLSKK---YRLEVG-IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDE 94 (651)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT---TTTHHH-HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-
T ss_pred hhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH---hHHHhh-hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCC
Confidence 356899999999866 579999999999999854 454544 5669999999976 57788899999997754332
Q ss_pred c-h------------------hhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCC-C-chhhhhhccccHHH
Q 021242 80 R-D------------------SLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVD-S-YRPIIGAKRDIIHS 138 (315)
Q Consensus 80 ~-~------------------~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~-~-~~~~i~~~~g~i~~ 138 (315)
. . ..+.+.+.++.|+.+|+. .+..++..+...|..|+... + ....|....+.|+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~----~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~ 170 (651)
T 3grl_A 95 EEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEE----FDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSR 170 (651)
T ss_dssp -------------CHHHHHHHHHHHSTHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHH
T ss_pred cccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcC----ccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHH
Confidence 1 0 123578899999999996 68889999999999999644 3 56677755444999
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHh-hCCcHHHHHHHhcCC---CcchHHHHHHHHHHHhc-ChhhHH
Q 021242 139 LIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIA-LGGVQPLFSLVVNGG---RAGIVEDASAVIAQIAG-CEESVD 213 (315)
Q Consensus 139 Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~-~g~v~~L~~lL~~~~---~~~~~~~a~~~L~~L~~-~~~~~~ 213 (315)
|+.+|. +....++-.|+..|.+|+.+..+..+++. .|+++.|+.++..++ ...+.+.|+.+|.||.. ++.+..
T Consensus 171 Lv~lL~--d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~ 248 (651)
T 3grl_A 171 LMDLLA--DSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQN 248 (651)
T ss_dssp HHGGGG--CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHh--CchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHH
Confidence 999999 45778888999999999997777666665 699999999997533 12467889999999988 567888
Q ss_pred HHHhcCCHHHHHHHhhcCCCCCh---hHHHH---HHHHHHHHhccCC----H-HHHHHHHHHccCcHHHHHHHHhhC--C
Q 021242 214 EFKKCCGIGVLVDLLDLGTGSGH---RVKEN---AVSALLNLVNFGG----E-RAAEEVKEMAMQVADGIADVAQNG--S 280 (315)
Q Consensus 214 ~i~~~~~i~~Lv~ll~~~~~~~~---~~~~~---a~~~L~~l~~~~~----~-~~~~~i~~~~~g~~~~L~~ll~~~--~ 280 (315)
.|.+.++++.|..++..++.... ..-.+ +..++.-++..++ . .+...+.+ .|+++.|++++-+. +
T Consensus 249 ~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~--~g~l~~Ll~ll~~~~~p 326 (651)
T 3grl_A 249 FFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQ--CGLLQQLCTILMATGVP 326 (651)
T ss_dssp HHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH--TTHHHHHHHHHTCSSCC
T ss_pred HHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH--CCCHHHHHHHHccCCCC
Confidence 89999999999999986421111 11222 5555666655432 1 24456666 99999999998865 6
Q ss_pred HHHHHHHHHHHHHHh
Q 021242 281 AKGKTKAVALLKILV 295 (315)
Q Consensus 281 ~~~k~~A~~~L~~l~ 295 (315)
..++..|..++..+-
T Consensus 327 ~~i~~~Al~tla~~i 341 (651)
T 3grl_A 327 ADILTETINTVSEVI 341 (651)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 788888877776653
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=99.46 E-value=7.7e-12 Score=109.43 Aligned_cols=229 Identities=12% Similarity=0.047 Sum_probs=166.9
Q ss_pred hhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhh
Q 021242 4 KRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSL 83 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~ 83 (315)
++..++.|++.|.++++.+|..|+++|..+.. .++++.|+.+|.+.++.++..|+++|..+......
T Consensus 21 ~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~-- 87 (280)
T 1oyz_A 21 KKLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC-- 87 (280)
T ss_dssp HTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT--
T ss_pred HHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc--
Confidence 45689999999999999999999999998862 23689999999999999999999999888643221
Q ss_pred hhhcCchHHHHH-HHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHH
Q 021242 84 MSTRGLLDAISH-VLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFG 162 (315)
Q Consensus 84 i~~~~~i~~L~~-lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~ 162 (315)
+ ...++.|.+ ++.+ +++.++..++++|.++...... .. ..+++.|+..+. +.++.++..|+++|.+
T Consensus 88 ~--~~l~~~L~~~~~~d----~~~~vr~~a~~aL~~l~~~~~~----~~-~~~~~~L~~~l~--d~~~~vR~~a~~aL~~ 154 (280)
T 1oyz_A 88 E--DNVFNILNNMALND----KSACVRATAIESTAQRCKKNPI----YS-PKIVEQSQITAF--DKSTNVRRATAFAISV 154 (280)
T ss_dssp H--HHHHHHHHHHHHHC----SCHHHHHHHHHHHHHHHHHCGG----GH-HHHHHHHHHHTT--CSCHHHHHHHHHHHHT
T ss_pred c--hHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHhccCCc----cc-HHHHHHHHHHhh--CCCHHHHHHHHHHHHh
Confidence 0 013344443 3444 6789999999999998742210 11 245899999998 5689999999999998
Q ss_pred hccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHH
Q 021242 163 IALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENA 242 (315)
Q Consensus 163 Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a 242 (315)
+.. .++++.|++++. +++..++..++..|..+.... ...++.|+.++.+. +..++..+
T Consensus 155 ~~~----------~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~~~--------~~~~~~L~~~l~d~---~~~vR~~A 212 (280)
T 1oyz_A 155 IND----------KATIPLLINLLK-DPNGDVRNWAAFAININKYDN--------SDIRDCFVEMLQDK---NEEVRIEA 212 (280)
T ss_dssp C-------------CCHHHHHHHHT-CSSHHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTCS---CHHHHHHH
T ss_pred cCC----------HHHHHHHHHHHc-CCCHHHHHHHHHHHHhhccCc--------HHHHHHHHHHhcCC---CHHHHHHH
Confidence 753 258999999996 677888999999998874321 12467888888865 78999999
Q ss_pred HHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhh
Q 021242 243 VSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 243 ~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
+.+|..+.. ..+++.|..++++++ ++..|...|..+..
T Consensus 213 ~~aL~~~~~--------------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~ 250 (280)
T 1oyz_A 213 IIGLSYRKD--------------KRVLSVLCDELKKNT--VYDDIIEAAGELGD 250 (280)
T ss_dssp HHHHHHTTC--------------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC
T ss_pred HHHHHHhCC--------------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc
Confidence 999988741 234555555565533 66666666665543
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-11 Score=103.64 Aligned_cols=188 Identities=19% Similarity=0.158 Sum_probs=154.8
Q ss_pred hhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhh
Q 021242 4 KRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSL 83 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~ 83 (315)
.+..++.|++.|+++++.+|..|+..|..+.. .++++.|+.+|.+.++.++..|+.+|..+.
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~------- 78 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG------- 78 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC-------
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC-------
Confidence 46789999999999999999999999998753 356999999999999999999999998874
Q ss_pred hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHh
Q 021242 84 MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGI 163 (315)
Q Consensus 84 i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~L 163 (315)
..+.++.|+.+|++ +++.++..++.+|..+.. ...++.|+.++. +.++.++..|+.+|.++
T Consensus 79 --~~~~~~~L~~~l~~----~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~--d~~~~vr~~a~~aL~~~ 139 (211)
T 3ltm_A 79 --DERAVEPLIKALKD----EDGWVRQSAAVALGQIGD-----------ERAVEPLIKALK--DEDWFVRIAAAFALGEI 139 (211)
T ss_dssp --CGGGHHHHHHHTTC----SSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTT--CSSHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHh--CCCHHHHHHHHHHHHHc
Confidence 35678999999987 688999999999988642 245899999998 56899999999999997
Q ss_pred ccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHH
Q 021242 164 ALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAV 243 (315)
Q Consensus 164 s~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~ 243 (315)
.. ..+++.|.+++. +++..++..++.+|..+.. ...++.|..++.++ ++.++..|.
T Consensus 140 ~~----------~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~---~~~vr~~A~ 195 (211)
T 3ltm_A 140 GD----------ERAVEPLIKALK-DEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETG---TGFARKVAV 195 (211)
T ss_dssp CC----------GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHC---CHHHHHHHH
T ss_pred CC----------HHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCC---CHHHHHHHH
Confidence 53 357889999995 6778889999999998732 22467788888875 889999999
Q ss_pred HHHHHHhcc
Q 021242 244 SALLNLVNF 252 (315)
Q Consensus 244 ~~L~~l~~~ 252 (315)
.+|..+...
T Consensus 196 ~aL~~~~~~ 204 (211)
T 3ltm_A 196 NYLETHKSF 204 (211)
T ss_dssp HHHHC----
T ss_pred HHHHhcCCC
Confidence 999998654
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.5e-11 Score=100.79 Aligned_cols=186 Identities=18% Similarity=0.146 Sum_probs=154.2
Q ss_pred hhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhh
Q 021242 4 KRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSL 83 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~ 83 (315)
.....+.+++.|+++++.+|..|+..|..+.. .+.++.|+++|.+.++.++..|+.+|..+.
T Consensus 12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~------- 73 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG------- 73 (201)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC-------
T ss_pred CCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC-------
Confidence 45678899999999999999999999998753 246899999999999999999999998764
Q ss_pred hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHh
Q 021242 84 MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGI 163 (315)
Q Consensus 84 i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~L 163 (315)
....++.|+.+|.+ +++.++..++++|..+.. ...++.|+.++. +.++.++..|+++|..+
T Consensus 74 --~~~~~~~L~~~l~d----~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~--d~~~~vr~~a~~aL~~~ 134 (201)
T 3ltj_A 74 --DERAVEPLIKALKD----EDGWVRQSAAVALGQIGD-----------ERAVEPLIKALK--DEDWFVRIAAAFALGEI 134 (201)
T ss_dssp --CGGGHHHHHHHTTC----SSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTT--CSSHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHc--CCCHHHHHHHHHHHHHh
Confidence 34678999999987 688999999999988632 234899999998 56899999999999987
Q ss_pred ccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHH
Q 021242 164 ALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAV 243 (315)
Q Consensus 164 s~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~ 243 (315)
.. .++++.|.+++. +++..++..|+.+|..+.. ...++.|..++.++ ++.++..+.
T Consensus 135 ~~----------~~~~~~L~~~l~-d~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d~---~~~vr~~A~ 190 (201)
T 3ltj_A 135 GD----------ERAVEPLIKALK-DEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETG---TGFARKVAV 190 (201)
T ss_dssp TC----------GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHC---CHHHHHHHH
T ss_pred CC----------HHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCC---CHHHHHHHH
Confidence 53 467889999995 5677889999999988732 12467888888875 889999999
Q ss_pred HHHHHHh
Q 021242 244 SALLNLV 250 (315)
Q Consensus 244 ~~L~~l~ 250 (315)
.+|..+-
T Consensus 191 ~aL~~l~ 197 (201)
T 3ltj_A 191 NYLETHK 197 (201)
T ss_dssp HHHHHCC
T ss_pred HHHHHHH
Confidence 9998873
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.8e-10 Score=96.33 Aligned_cols=189 Identities=18% Similarity=0.172 Sum_probs=151.9
Q ss_pred hCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCc
Q 021242 46 EAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSY 125 (315)
Q Consensus 46 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~ 125 (315)
..+.++.|+.+|++.++.++..|+..|..+. ..+.++.|+.+|.+ +++.++..++.+|..+..
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~---------~~~~~~~L~~~l~~----~~~~vr~~a~~aL~~~~~---- 79 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIG---------DERAVEPLIKALKD----EDAWVRRAAADALGQIGD---- 79 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC---------CGGGHHHHHHHTTC----SCHHHHHHHHHHHHHHCC----
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------CccHHHHHHHHHcC----CCHHHHHHHHHHHHhhCC----
Confidence 3567999999999999999999999998764 35689999999997 688999999999988642
Q ss_pred hhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHH
Q 021242 126 RPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQI 205 (315)
Q Consensus 126 ~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L 205 (315)
...++.|+.++. +.++.++..|+++|..+.. .++++.|++++. +++..++..++.+|..+
T Consensus 80 -------~~~~~~L~~~l~--~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~ 139 (211)
T 3ltm_A 80 -------ERAVEPLIKALK--DEDGWVRQSAAVALGQIGD----------ERAVEPLIKALK-DEDWFVRIAAAFALGEI 139 (211)
T ss_dssp -------GGGHHHHHHHTT--CSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTT-CSSHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHc--CCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHh-CCCHHHHHHHHHHHHHc
Confidence 244899999998 5689999999999998753 357889999995 67888999999999987
Q ss_pred hcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHH
Q 021242 206 AGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKT 285 (315)
Q Consensus 206 ~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~ 285 (315)
.. ...++.|..++.+. ++.++..++.+|..+. .+ .+++.|..+++++++.+|.
T Consensus 140 ~~----------~~~~~~L~~~l~d~---~~~vr~~a~~aL~~~~---~~-----------~~~~~L~~~l~d~~~~vr~ 192 (211)
T 3ltm_A 140 GD----------ERAVEPLIKALKDE---DGWVRQSAADALGEIG---GE-----------RVRAAMEKLAETGTGFARK 192 (211)
T ss_dssp CC----------GGGHHHHHHHTTCS---SHHHHHHHHHHHHHHC---SH-----------HHHHHHHHHHHHCCHHHHH
T ss_pred CC----------HHHHHHHHHHHcCC---CHHHHHHHHHHHHHhC---ch-----------hHHHHHHHHHhCCCHHHHH
Confidence 42 24688899999765 8899999999999983 11 1455677788899999999
Q ss_pred HHHHHHHHHhhCC
Q 021242 286 KAVALLKILVDDG 298 (315)
Q Consensus 286 ~A~~~L~~l~~~~ 298 (315)
.|...|..+....
T Consensus 193 ~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 193 VAVNYLETHKSFN 205 (211)
T ss_dssp HHHHHHHC-----
T ss_pred HHHHHHHhcCCCC
Confidence 9999999887643
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=99.32 E-value=3e-10 Score=94.21 Aligned_cols=185 Identities=19% Similarity=0.183 Sum_probs=151.2
Q ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCch
Q 021242 47 AGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYR 126 (315)
Q Consensus 47 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~ 126 (315)
.+..+.++++|++.++.++..|+.+|..+. ..+.++.|+.+|++ +++.++..++.+|..+..
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~---------~~~~~~~L~~~l~~----~~~~vr~~a~~~L~~~~~----- 74 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIG---------DERAVEPLIKALKD----EDAWVRRAAADALGQIGD----- 74 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHC---------CGGGHHHHHHHTTC----SSHHHHHHHHHHHHHHCC-----
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcC---------ChhHHHHHHHHHcC----CCHHHHHHHHHHHHhhCC-----
Confidence 356889999999999999999999998764 34678999999986 688999999999887532
Q ss_pred hhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHh
Q 021242 127 PIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIA 206 (315)
Q Consensus 127 ~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~ 206 (315)
...++.|+.++. +.++.++..|+++|.++.. ..+++.|++++. +++..++..++.+|..+.
T Consensus 75 ------~~~~~~L~~~l~--d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 75 ------ERAVEPLIKALK--DEDGWVRQSAAVALGQIGD----------ERAVEPLIKALK-DEDWFVRIAAAFALGEIG 135 (201)
T ss_dssp ------GGGHHHHHHHTT--CSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHT
T ss_pred ------HHHHHHHHHHHc--CCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHc-CCCHHHHHHHHHHHHHhC
Confidence 234899999998 5689999999999998753 357888999995 677888999999998874
Q ss_pred cChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHH
Q 021242 207 GCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTK 286 (315)
Q Consensus 207 ~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~ 286 (315)
. ...++.|+.++.+. ++.++..++.+|..+. .+. +++.|..+++++++.+|..
T Consensus 136 ~----------~~~~~~L~~~l~d~---~~~vr~~A~~aL~~~~---~~~-----------~~~~L~~~l~d~~~~vr~~ 188 (201)
T 3ltj_A 136 D----------ERAVEPLIKALKDE---DGWVRQSAADALGEIG---GER-----------VRAAMEKLAETGTGFARKV 188 (201)
T ss_dssp C----------GGGHHHHHHHTTCS---SHHHHHHHHHHHHHHC---SHH-----------HHHHHHHHHHHCCHHHHHH
T ss_pred C----------HHHHHHHHHHHcCC---CHHHHHHHHHHHHHhC---chh-----------HHHHHHHHHhCCCHHHHHH
Confidence 2 34688899999865 8899999999999982 222 4556777888999999999
Q ss_pred HHHHHHHHh
Q 021242 287 AVALLKILV 295 (315)
Q Consensus 287 A~~~L~~l~ 295 (315)
|...|..+.
T Consensus 189 A~~aL~~l~ 197 (201)
T 3ltj_A 189 AVNYLETHK 197 (201)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHHH
Confidence 999998775
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=99.27 E-value=1e-10 Score=117.80 Aligned_cols=276 Identities=14% Similarity=0.119 Sum_probs=189.5
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHH--HH--hCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPM--IS--EAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR 80 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~--i~--~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~ 80 (315)
..-++.|++.+.++++..+..|+.+|..+++..+..-.. +. -.+.+|.++.++++.++.+|..|+++|.++.....
T Consensus 127 p~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~ 206 (852)
T 4fdd_A 127 PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRT 206 (852)
T ss_dssp TTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccc
Confidence 346789999999999999999999999998654322110 00 12357777777788899999999999988876543
Q ss_pred hhh-hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHH
Q 021242 81 DSL-MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKA 159 (315)
Q Consensus 81 ~~~-i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~a 159 (315)
... ..-.+.++.++.++.+ ++++++..++++|..++...... ......++++.++.++. +.++.++..|+..
T Consensus 207 ~~~~~~~~~~l~~l~~~~~d----~~~~vr~~a~~~L~~l~~~~~~~-~~~~l~~l~~~l~~~~~--~~~~~vr~~a~e~ 279 (852)
T 4fdd_A 207 QALMLHIDSFIENLFALAGD----EEPEVRKNVCRALVMLLEVRMDR-LLPHMHNIVEYMLQRTQ--DQDENVALEACEF 279 (852)
T ss_dssp HHHHTSHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCHHH-HGGGHHHHHHHHHHHHT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHHHHhCHHH-HHHHHHHHHHHHHHHcc--CCcHHHHHHHHHH
Confidence 222 1123467888888876 68899999999999998633211 11111356888888888 5578899999999
Q ss_pred HHHhccCCCcHHHHHh--hCCcHHHHHHH----------hcC-----------CCcchHHHHHHHHHHHhcChhhHHHHH
Q 021242 160 LFGIALYPLNRYQVIA--LGGVQPLFSLV----------VNG-----------GRAGIVEDASAVIAQIAGCEESVDEFK 216 (315)
Q Consensus 160 L~~Ls~~~~~~~~i~~--~g~v~~L~~lL----------~~~-----------~~~~~~~~a~~~L~~L~~~~~~~~~i~ 216 (315)
+..++..+..+..+-. ...+|.++..+ ..+ .+-.++..+..+|..++.... +.+.
T Consensus 280 l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~~~ 357 (852)
T 4fdd_A 280 WLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DELL 357 (852)
T ss_dssp HHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--GGGH
T ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HHHH
Confidence 9999876544432211 24456666665 122 122456778888888865321 1121
Q ss_pred hcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhh
Q 021242 217 KCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 217 ~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
. ..++.+..++.+. +...|+.|+.+|.+++.... ......+ .++++.|+.++++.++.+|..|++.|..+.+
T Consensus 358 ~-~l~~~l~~~l~~~---~~~~R~aa~~alg~i~~~~~-~~~~~~l---~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 429 (852)
T 4fdd_A 358 P-HILPLLKELLFHH---EWVVKESGILVLGAIAEGCM-QGMIPYL---PELIPHLIQCLSDKKALVRSITCWTLSRYAH 429 (852)
T ss_dssp H-HHHHHHHHHHTCS---SHHHHHHHHHHHHHTTTTTH-HHHGGGH---HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHH
T ss_pred H-HHHHHHHHHhcCC---CHHHHHHHHHHHHHHHhcch-HHHHHHH---HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 1 2356666777754 89999999999999986443 2212222 4688999999999999999999999988776
Q ss_pred C
Q 021242 297 D 297 (315)
Q Consensus 297 ~ 297 (315)
.
T Consensus 430 ~ 430 (852)
T 4fdd_A 430 W 430 (852)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=99.25 E-value=4.7e-10 Score=97.98 Aligned_cols=224 Identities=13% Similarity=0.012 Sum_probs=164.0
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHH-HHHcCCCHHHHHHHHHHHHhcCcccchhh
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLA-EILYSSSHAFQENAAATLLNLSITSRDSL 83 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv-~lL~~~~~~~~~~a~~~L~~la~~~~~~~ 83 (315)
+..++.|+++|.++++.+|..|+++|..+...... .. ..++.|. .++++.++.++..++++|.++......
T Consensus 53 ~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~-~~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~-- 124 (280)
T 1oyz_A 53 QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC-ED-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPI-- 124 (280)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT-HH-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG--
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc-ch-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc--
Confidence 45789999999999999999999999988643221 11 1233444 245678899999999999888643211
Q ss_pred hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHh
Q 021242 84 MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGI 163 (315)
Q Consensus 84 i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~L 163 (315)
.....++.|+..+.+ +++.++..++.+|.++.. ...++.|+.++. +.++.++..|+++|..+
T Consensus 125 -~~~~~~~~L~~~l~d----~~~~vR~~a~~aL~~~~~-----------~~~~~~L~~~l~--d~~~~vr~~a~~aL~~~ 186 (280)
T 1oyz_A 125 -YSPKIVEQSQITAFD----KSTNVRRATAFAISVIND-----------KATIPLLINLLK--DPNGDVRNWAAFAININ 186 (280)
T ss_dssp -GHHHHHHHHHHHTTC----SCHHHHHHHHHHHHTC--------------CCHHHHHHHHT--CSSHHHHHHHHHHHHHH
T ss_pred -ccHHHHHHHHHHhhC----CCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHc--CCCHHHHHHHHHHHHhh
Confidence 123467889999987 788999999999887542 235899999999 56889999999999988
Q ss_pred ccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHH
Q 021242 164 ALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAV 243 (315)
Q Consensus 164 s~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~ 243 (315)
.... ..+++.|+.++. +++..++..|+.+|..+. ....++.|+.++.++ .++..+.
T Consensus 187 ~~~~--------~~~~~~L~~~l~-d~~~~vR~~A~~aL~~~~----------~~~~~~~L~~~l~d~-----~vr~~a~ 242 (280)
T 1oyz_A 187 KYDN--------SDIRDCFVEMLQ-DKNEEVRIEAIIGLSYRK----------DKRVLSVLCDELKKN-----TVYDDII 242 (280)
T ss_dssp TCCC--------HHHHHHHHHHTT-CSCHHHHHHHHHHHHHTT----------CGGGHHHHHHHHTSS-----SCCHHHH
T ss_pred ccCc--------HHHHHHHHHHhc-CCCHHHHHHHHHHHHHhC----------CHhhHHHHHHHhcCc-----cHHHHHH
Confidence 5322 245688899985 567888999999998874 234689999999853 3777888
Q ss_pred HHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhh-CCHHHHHHHHHHHH
Q 021242 244 SALLNLVNFGGERAAEEVKEMAMQVADGIADVAQN-GSAKGKTKAVALLK 292 (315)
Q Consensus 244 ~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~-~~~~~k~~A~~~L~ 292 (315)
.+|..+.. ..+++.|..++++ .++.+...+...|+
T Consensus 243 ~aL~~i~~--------------~~~~~~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 243 EAAGELGD--------------KTLLPVLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp HHHHHHCC--------------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred HHHHhcCc--------------hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence 88877632 2367788888875 56777777766553
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=99.22 E-value=4.5e-11 Score=120.45 Aligned_cols=274 Identities=12% Similarity=0.057 Sum_probs=186.7
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHh--CCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhh
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISE--AGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSL 83 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~ 83 (315)
..++.+++.++++++++|..|+++|..+....+. .+.. .+.++.+..++.+.+++++..|+++|..++......+
T Consensus 174 ~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~---~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~ 250 (852)
T 4fdd_A 174 IMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ---ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRL 250 (852)
T ss_dssp HHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH---HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH---HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHH
Confidence 3567778888889999999999999988865332 1211 3568889999999999999999999999887653221
Q ss_pred h-hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhh-ccccHHHHHHHhhc---------cC-----
Q 021242 84 M-STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGA-KRDIIHSLIEIIKT---------RN----- 147 (315)
Q Consensus 84 i-~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~~g~i~~Lv~ll~~---------~~----- 147 (315)
. .-.+.++.++..+++ .+++++..|+.++..++.....+..+.. ...++|.++..+.. .+
T Consensus 251 ~~~l~~l~~~l~~~~~~----~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~ 326 (852)
T 4fdd_A 251 LPHMHNIVEYMLQRTQD----QDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGS 326 (852)
T ss_dssp GGGHHHHHHHHHHHHTC----SSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHccC----CcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccc
Confidence 1 112477888888886 6788999999999998865543332221 12446666666510 01
Q ss_pred ------CChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhh-HHHHHhcCC
Q 021242 148 ------SPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEES-VDEFKKCCG 220 (315)
Q Consensus 148 ------~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~-~~~i~~~~~ 220 (315)
.+..++..|..+|..++..... .++ ...++.+.+++. +++...++.|+.+|.+++..... ..... .+.
T Consensus 327 ~~dd~~~~~~vr~~a~~~L~~la~~~~~--~~~-~~l~~~l~~~l~-~~~~~~R~aa~~alg~i~~~~~~~~~~~l-~~~ 401 (852)
T 4fdd_A 327 GGDDTISDWNLRKCSAAALDVLANVYRD--ELL-PHILPLLKELLF-HHEWVVKESGILVLGAIAEGCMQGMIPYL-PEL 401 (852)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHHT-CSSHHHHHHHHHHHHHTTTTTHHHHGGGH-HHH
T ss_pred ccccccccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhcchHHHHHHH-HHH
Confidence 1123567788888888763211 111 234666777775 46778889999999999874321 11111 235
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhC
Q 021242 221 IGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDD 297 (315)
Q Consensus 221 i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~ 297 (315)
++.++..+.+. ++.++..+++++.+++....+....... .++++.|+..+++.++.+|..|++.|..+.+.
T Consensus 402 l~~l~~~l~d~---~~~Vr~~a~~~l~~l~~~~~~~~~~~~~---~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~ 472 (852)
T 4fdd_A 402 IPHLIQCLSDK---KALVRSITCWTLSRYAHWVVSQPPDTYL---KPLMTELLKRILDSNKRVQEAACSAFATLEEE 472 (852)
T ss_dssp HHHHHHHTTCS---SHHHHHHHHHHHHHTHHHHHHSCTTTTH---HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCC---CHHHHHHHHHHHHHHHHHhccchHHHHH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 78888888764 8999999999999998532110001111 35778888888888999999999999888653
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=99.16 E-value=1.5e-10 Score=113.87 Aligned_cols=201 Identities=14% Similarity=0.119 Sum_probs=145.1
Q ss_pred hhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHH-HHHcCCCHHHHHHHHHHHHhcCcccc--
Q 021242 4 KRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLA-EILYSSSHAFQENAAATLLNLSITSR-- 80 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv-~lL~~~~~~~~~~a~~~L~~la~~~~-- 80 (315)
++..|.++++.|+|++++.|..|+.+|.+++. ++..++.+...|+|++++ .+|.+.+.++++.|+++|.||+.+..
T Consensus 32 ~~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d 110 (684)
T 4gmo_A 32 REDKILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEAD 110 (684)
T ss_dssp HHHTTHHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred chhhHHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCch
Confidence 45678899999999999999999999999996 688999999988888765 57888899999999999999998764
Q ss_pred -hhhhhhcCchHHHHHHHhcCCC-----C-----CC-------HHHHHHHHHHHHHhhc-CCCchhhhhhccccHHHHHH
Q 021242 81 -DSLMSTRGLLDAISHVLRHHST-----S-----TS-------SAAVQSSAATLHSLLV-VDSYRPIIGAKRDIIHSLIE 141 (315)
Q Consensus 81 -~~~i~~~~~i~~L~~lL~~~~~-----~-----~~-------~~~~~~a~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~ 141 (315)
...+...|++++|..+++.... . .. .++..+++.+|++|+. .++....+...++ ++.|+.
T Consensus 111 ~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~-l~~l~~ 189 (684)
T 4gmo_A 111 FCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQT-ILRLLF 189 (684)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHH-HHHHHH
T ss_pred HHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhccc-HHHHHH
Confidence 2445689999999998853100 0 00 1233467788999985 4455556666544 899999
Q ss_pred HhhccC-CChHHHHHHHHHHHHhccCCC-cHHHHHhhCCcHHHHHHHh-cCCCcchHHHHHHHHHHHh
Q 021242 142 IIKTRN-SPLRSVKDALKALFGIALYPL-NRYQVIALGGVQPLFSLVV-NGGRAGIVEDASAVIAQIA 206 (315)
Q Consensus 142 ll~~~~-~~~~~~~~a~~aL~~Ls~~~~-~~~~i~~~g~v~~L~~lL~-~~~~~~~~~~a~~~L~~L~ 206 (315)
.|...+ ...++...|+.+|+.++.+.. ....+.+.|....+..++. ...+...+..++++|.|+.
T Consensus 190 ~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 190 RLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence 885322 246788999999999998543 4455555555433322221 1134455677889999863
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=99.16 E-value=1.3e-09 Score=104.46 Aligned_cols=265 Identities=12% Similarity=0.075 Sum_probs=180.2
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhh
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMS 85 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~ 85 (315)
.-++.+.+.++++++.+|..|+.+|..++..-.. .......+|.+..++++.++.++..|+.+|..++..-.....
T Consensus 164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~- 239 (588)
T 1b3u_A 164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDL- 239 (588)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHH-
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH---HhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHH-
Confidence 3456666777888999999999999999865322 122356788999999888899999999999887754332211
Q ss_pred hcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhcc
Q 021242 86 TRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL 165 (315)
Q Consensus 86 ~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~ 165 (315)
....++.+..++.+ .+..++..++.+|..++...... .+. ..+++.++.++. +.++.++..|+.+|..++.
T Consensus 240 ~~~~~~~l~~~~~d----~~~~vR~~a~~~l~~l~~~~~~~-~~~--~~l~~~l~~~l~--d~~~~vr~~a~~~l~~~~~ 310 (588)
T 1b3u_A 240 EALVMPTLRQAAED----KSWRVRYMVADKFTELQKAVGPE-ITK--TDLVPAFQNLMK--DCEAEVRAAASHKVKEFCE 310 (588)
T ss_dssp HHHTHHHHHHHHTC----SSHHHHHHHHHTHHHHHHHHCHH-HHH--HTHHHHHHHHHT--CSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccC----CCHHHHHHHHHHHHHHHHHhCcc-cch--hHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHH
Confidence 23467788888876 67889999999999987522111 122 245899999998 5688999999999999886
Q ss_pred C--CCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHH
Q 021242 166 Y--PLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAV 243 (315)
Q Consensus 166 ~--~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~ 243 (315)
. ++.+........+|.+..++. +++..++..++.+|..++..-. .+.. ....+|.+..++++. ++.++..++
T Consensus 311 ~~~~~~~~~~~~~~l~p~l~~~l~-d~~~~vR~~a~~~l~~l~~~~~-~~~~-~~~l~p~l~~~l~d~---~~~Vr~~a~ 384 (588)
T 1b3u_A 311 NLSADCRENVIMSQILPCIKELVS-DANQHVKSALASVIMGLSPILG-KDNT-IEHLLPLFLAQLKDE---CPEVRLNII 384 (588)
T ss_dssp TSCTTTHHHHHHHTHHHHHHHHHT-CSCHHHHHHHHTTGGGGHHHHC-HHHH-HHHTHHHHHHHHTCS---CHHHHHHHH
T ss_pred HhChhhhhhHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhh-HhHH-HHHHHHHHHHHhCCC---chHHHHHHH
Confidence 3 333322233567788888885 5677888888888888764211 1111 123567888888764 788888888
Q ss_pred HHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 021242 244 SALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILV 295 (315)
Q Consensus 244 ~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~ 295 (315)
.+|..++...+.. .. . ...+|.|..++++.+.++|..+...+..+.
T Consensus 385 ~~l~~l~~~~~~~---~~-~--~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~ 430 (588)
T 1b3u_A 385 SNLDCVNEVIGIR---QL-S--QSLLPAIVELAEDAKWRVRLAIIEYMPLLA 430 (588)
T ss_dssp TTCHHHHHHSCHH---HH-H--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHH---HH-H--HHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 8887776543321 11 1 235566666666666677776666665554
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=99.16 E-value=3.4e-09 Score=101.52 Aligned_cols=264 Identities=12% Similarity=0.059 Sum_probs=173.6
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhc
Q 021242 8 VRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTR 87 (315)
Q Consensus 8 i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~ 87 (315)
++.|..++.+.++.+|..|..+|..++...+.. -...-.+|.+..+..+.+...|..|+.++..++..-.... ..
T Consensus 89 l~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~---~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~--~~ 163 (588)
T 1b3u_A 89 LPPLESLATVEETVVRDKAVESLRAISHEHSPS---DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAV--KA 163 (588)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH---HHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHH--HH
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHH--HH
Confidence 444445556667778888888888777554321 1222345666666666667777777777777665432211 23
Q ss_pred CchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCC
Q 021242 88 GLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYP 167 (315)
Q Consensus 88 ~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~ 167 (315)
..++.+..++.+ +++.++..++.+|..++..-...... ..++|.+..++. ++++.++..|+.+|..++..-
T Consensus 164 ~l~~~l~~l~~d----~~~~VR~~a~~~l~~l~~~~~~~~~~---~~l~~~l~~~~~--d~~~~vr~~a~~~l~~l~~~~ 234 (588)
T 1b3u_A 164 ELRQYFRNLCSD----DTPMVRRAAASKLGEFAKVLELDNVK---SEIIPMFSNLAS--DEQDSVRLLAVEACVNIAQLL 234 (588)
T ss_dssp HHHHHHHHHHTC----SCHHHHHHHHHHHHHHHHTSCHHHHH---HTHHHHHHHHHT--CSCHHHHTTHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCC----CCHHHHHHHHHHHHHHHHHhcHHhHH---HHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHhC
Confidence 356777777776 68899999999999998543322221 356888888888 567889999999999887632
Q ss_pred CcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHH
Q 021242 168 LNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALL 247 (315)
Q Consensus 168 ~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~ 247 (315)
.. .......+|.+.+++. +++..++..++.+|..++..-.. . ......++.++.++++. ++.++..++.+|.
T Consensus 235 ~~--~~~~~~~~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~-~-~~~~~l~~~l~~~l~d~---~~~vr~~a~~~l~ 306 (588)
T 1b3u_A 235 PQ--EDLEALVMPTLRQAAE-DKSWRVRYMVADKFTELQKAVGP-E-ITKTDLVPAFQNLMKDC---EAEVRAAASHKVK 306 (588)
T ss_dssp CH--HHHHHHTHHHHHHHHT-CSSHHHHHHHHHTHHHHHHHHCH-H-HHHHTHHHHHHHHHTCS---SHHHHHHHHHHHH
T ss_pred CH--HHHHHHHHHHHHHHcc-CCCHHHHHHHHHHHHHHHHHhCc-c-cchhHHHHHHHHHhCCC---cHHHHHHHHHHHH
Confidence 21 1223456778888884 56677888899999888653111 1 12234578888998864 8899999999999
Q ss_pred HHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 021242 248 NLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILV 295 (315)
Q Consensus 248 ~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~ 295 (315)
.++....+........ ...+|.+..++++.++.+|..|.+.|..+.
T Consensus 307 ~~~~~~~~~~~~~~~~--~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~ 352 (588)
T 1b3u_A 307 EFCENLSADCRENVIM--SQILPCIKELVSDANQHVKSALASVIMGLS 352 (588)
T ss_dssp HHHHTSCTTTHHHHHH--HTHHHHHHHHHTCSCHHHHHHHHTTGGGGH
T ss_pred HHHHHhChhhhhhHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 9986543221111111 456677777777778888887777665553
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=99.11 E-value=1e-09 Score=102.07 Aligned_cols=276 Identities=11% Similarity=0.076 Sum_probs=183.6
Q ss_pred hhhHHHHHHHhCCC--CHHHHHHHHHHHHHHhccC-chhhHHHHhCCCHHHHHHHHcCC--CHHHHHHHHHHHHhcCccc
Q 021242 5 RRTVRSLVTKLGSV--SEQTRAEALAELRLLSKHD-AEIRPMISEAGSIPYLAEILYSS--SHAFQENAAATLLNLSITS 79 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~--~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~la~~~ 79 (315)
..-++.|++.+.++ ++..+..|+.+|..++... +..-.... ..+++.++..+.+. ++.+|..|++++.++...-
T Consensus 127 ~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~ 205 (462)
T 1ibr_B 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT 205 (462)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 35678899999988 8999999999999998653 21111111 24678888999887 7899999999998865321
Q ss_pred c---hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCC--chhhhhhccccHHHHHHHhhccCCChHHHH
Q 021242 80 R---DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDS--YRPIIGAKRDIIHSLIEIIKTRNSPLRSVK 154 (315)
Q Consensus 80 ~---~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~--~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~ 154 (315)
+ .........++.+...+.+ ++++++..++.+|..++.... ....+.. .+++.++..+. ..++.++.
T Consensus 206 ~~~~~~~~~~~~l~~~l~~~~~~----~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~--~l~~~~~~~~~--~~~~~v~~ 277 (462)
T 1ibr_B 206 KANFDKESERHFIMQVVCEATQC----PDTRVRVAALQNLVKIMSLYYQYMETYMGP--ALFAITIEAMK--SDIDEVAL 277 (462)
T ss_dssp HHHHTSHHHHHHHHHHHHHHTTC----SSHHHHHHHHHHHHHHHHHCGGGCTTTTTT--THHHHHHHHHH--CSSHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHc--CCchHHHH
Confidence 1 1111111135555555554 678899999999999985332 1222221 56888888887 56788999
Q ss_pred HHHHHHHHhccCC------------------CcHHHHHh---hCCcHHHHHHHhcC------CCcchHHHHHHHHHHHhc
Q 021242 155 DALKALFGIALYP------------------LNRYQVIA---LGGVQPLFSLVVNG------GRAGIVEDASAVIAQIAG 207 (315)
Q Consensus 155 ~a~~aL~~Ls~~~------------------~~~~~i~~---~g~v~~L~~lL~~~------~~~~~~~~a~~~L~~L~~ 207 (315)
.|+..+..++... .....+++ ...+|.+++.+... .+..++..|..+|..|+.
T Consensus 278 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~ 357 (462)
T 1ibr_B 278 QGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLAT 357 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHH
Confidence 9999888887532 00111111 34566667777421 123567788888888866
Q ss_pred ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHH
Q 021242 208 CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKA 287 (315)
Q Consensus 208 ~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A 287 (315)
.-. +.+. ...++.+...+.+. +...|+.++.++..++....+......+ ..++|.|+..+.+.++.+|..|
T Consensus 358 ~~~--~~~~-~~~~~~l~~~l~~~---~~~~r~aal~~l~~l~~~~~~~~~~~~l---~~~~~~l~~~l~d~~~~Vr~~a 428 (462)
T 1ibr_B 358 CCE--DDIV-PHVLPFIKEHIKNP---DWRYRDAAVMAFGCILEGPEPSQLKPLV---IQAMPTLIELMKDPSVVVRDTA 428 (462)
T ss_dssp HTT--TTHH-HHHHHHHHHHTTCS---SHHHHHHHHHHHHHTSSSSCTTTTCTTT---TTHHHHHHHGGGCSCHHHHHHH
T ss_pred hcc--HHHH-HHHHHHHHHHhcCC---ChHHHHHHHHHHHHHhcCCcHHHHHHHH---HHHHHHHHHHhcCCCHHHHHHH
Confidence 311 1222 12356666677754 8899999999999998633211111111 5688999999999999999999
Q ss_pred HHHHHHHhhCC
Q 021242 288 VALLKILVDDG 298 (315)
Q Consensus 288 ~~~L~~l~~~~ 298 (315)
+++|..+....
T Consensus 429 ~~~l~~~~~~~ 439 (462)
T 1ibr_B 429 AWTVGRICELL 439 (462)
T ss_dssp HHHHHHHHHHG
T ss_pred HHHHHHHHHhc
Confidence 99999997743
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=99.10 E-value=5.9e-09 Score=100.87 Aligned_cols=261 Identities=16% Similarity=0.070 Sum_probs=175.1
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchh--h
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDS--L 83 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~--~ 83 (315)
.-++.+.+.|.++++.+|.+|+.++..+...+++ .+.+.+.++.|..+|.+.++.++..|+.+|..++.++... .
T Consensus 121 ~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~ 197 (591)
T 2vgl_B 121 YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLL 197 (591)
T ss_dssp HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSC
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccch
Confidence 3456788999999999999999999999876554 3344688999999999999999999999999998775422 2
Q ss_pred hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHh
Q 021242 84 MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGI 163 (315)
Q Consensus 84 i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~L 163 (315)
....+.+..|+..+.. .++-.+.....++..+...++ .. ...+++.+..+++ +.++.++..|++++..+
T Consensus 198 ~l~~~~~~~Ll~~l~~----~~~~~q~~il~~l~~l~~~~~--~~---~~~~l~~l~~~l~--~~~~~V~~ea~~~i~~l 266 (591)
T 2vgl_B 198 DLNPQNINKLLTALNE----CTEWGQIFILDCLSNYNPKDD--RE---AQSICERVTPRLS--HANSAVVLSAVKVLMKF 266 (591)
T ss_dssp CCHHHHHHHHHHHHHH----CCHHHHHHHHHHHHTSCCCSH--HH---HHHHHHHHTTCSC--SSTTHHHHHHHHHHHHS
T ss_pred hccHHHHHHHHHcCCC----CCchHHHHHHHHHHHhCCCCh--HH---HHHHHHHHHHHHc--CCChHHHHHHHHHHHHH
Confidence 2234567778888775 566777767777666553221 11 1245788888888 55789999999999998
Q ss_pred cc----CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-Ch------------------hhHHHHH----
Q 021242 164 AL----YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-CE------------------ESVDEFK---- 216 (315)
Q Consensus 164 s~----~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~~------------------~~~~~i~---- 216 (315)
.. +++....+ -..+.+.|+.++. ++..++..++..|..+.. .+ ..|..-.
T Consensus 267 ~~~~~~~~~~~~~~-~~~~~~~L~~L~~--~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~ 343 (591)
T 2vgl_B 267 LELLPKDSDYYNML-LKKLAPPLVTLLS--GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMI 343 (591)
T ss_dssp CCSCCBTTBSHHHH-HHHTHHHHHHHTT--SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHH
T ss_pred hhccCCCHHHHHHH-HHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHH
Confidence 74 33443333 2455677776653 567778888888877653 11 0111111
Q ss_pred ---hcCCHH----HHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHH
Q 021242 217 ---KCCGIG----VLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVA 289 (315)
Q Consensus 217 ---~~~~i~----~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~ 289 (315)
+...+. .|..++.+. +..++..+++++..++...++. . ...++.|+.+++..++.++..+..
T Consensus 344 ~l~~~~nv~~iv~~L~~~l~~~---d~~~r~~~v~aI~~la~~~~~~------~--~~~v~~Ll~ll~~~~~~v~~e~i~ 412 (591)
T 2vgl_B 344 RLASQANIAQVLAELKEYATEV---DVDFVRKAVRAIGRCAIKVEQS------A--ERCVSTLLDLIQTKVNYVVQEAIV 412 (591)
T ss_dssp HTCCSSTHHHHHHHHHHHTTSS---CHHHHHHHHHHHHHHHTTCHHH------H--HHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHCChhhHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHhChhH------H--HHHHHHHHHHHcccchHHHHHHHH
Confidence 122344 444455443 7888999999999988654311 1 335667777777766666666665
Q ss_pred HHHHH
Q 021242 290 LLKIL 294 (315)
Q Consensus 290 ~L~~l 294 (315)
.++.+
T Consensus 413 ~l~~i 417 (591)
T 2vgl_B 413 VIRDI 417 (591)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=99.08 E-value=5.1e-10 Score=110.14 Aligned_cols=197 Identities=13% Similarity=0.079 Sum_probs=143.5
Q ss_pred CchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHH-HHhhccCCChHHHHHHHHHHHHhccC
Q 021242 88 GLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLI-EIIKTRNSPLRSVKDALKALFGIALY 166 (315)
Q Consensus 88 ~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv-~ll~~~~~~~~~~~~a~~aL~~Ls~~ 166 (315)
+.+.++++.|++ ++++.|..|+++|.+|+..+..+..+...++ |..++ .+|. +.+.+++..|+++|.||+.+
T Consensus 34 ~~i~Pll~~L~S----~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~-v~~ll~~lL~--D~~~~Vr~~A~gaLrnL~~~ 106 (684)
T 4gmo_A 34 DKILPVLKDLKS----PDAKSRTTAAGAIANIVQDAKCRKLLLREQV-VHIVLTETLT--DNNIDSRAAGWEILKVLAQE 106 (684)
T ss_dssp HTTHHHHHHHSS----SCCSHHHHHHHHHHHHTTSHHHHHHHHHTTH-HHHHHHTTTT--CSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHcCC----CCHHHHHHHHHHHHHHHcCcHHHHHHHHcCC-HHHHHHHHcC--CCCHHHHHHHHHHHHHHHhh
Confidence 356667788987 6778899999999999987777777777555 66654 5677 45889999999999999974
Q ss_pred --CCcHHHHHhhCCcHHHHHHHhcC--------C--C----------cchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHH
Q 021242 167 --PLNRYQVIALGGVQPLFSLVVNG--------G--R----------AGIVEDASAVIAQIAG-CEESVDEFKKCCGIGV 223 (315)
Q Consensus 167 --~~~~~~i~~~g~v~~L~~lL~~~--------~--~----------~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~ 223 (315)
++.+..+++.|++++|..++.+. + . ..+.+.++.+|.+||. ..+....+.+.++++.
T Consensus 107 ~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~ 186 (684)
T 4gmo_A 107 EEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILR 186 (684)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHH
T ss_pred cCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHH
Confidence 57888999999999999998521 0 0 0133457788999986 5666777888888999
Q ss_pred HHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCc---HHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 021242 224 LVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQV---ADGIADVAQNGSAKGKTKAVALLKILV 295 (315)
Q Consensus 224 Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~---~~~L~~ll~~~~~~~k~~A~~~L~~l~ 295 (315)
++..+.+.+.....+...+..+|+.++..+ +...+.+.. .|. +..+..+..+.++ .+..++.+|.++.
T Consensus 187 l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn-~~~~~~i~~--~~~~~~~~~ll~~~~~~~~-~~~la~giL~Ni~ 257 (684)
T 4gmo_A 187 LLFRLISADIAPQDIYEEAISCLTTLSEDN-LKVGQAITD--DQETHVYDVLLKLATGTDP-RAVMACGVLHNVF 257 (684)
T ss_dssp HHHHHHHHCCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHT--CCSSCHHHHHHHHHHSSCT-THHHHHHHHHHHH
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHhccC-HHHHHHHHh--cchHHHHHHHHHHhcCCcH-HHHHHHHHHHhHh
Confidence 999886543345689999999999998744 455566665 554 2333343444444 4566777777763
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=99.01 E-value=1.8e-08 Score=97.42 Aligned_cols=266 Identities=15% Similarity=0.100 Sum_probs=167.9
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhh
Q 021242 7 TVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMST 86 (315)
Q Consensus 7 ~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~ 86 (315)
.++.+...|+++++.+|..|+.+|.++. +++... ..+|.+..++.+.++.+|..|+.++.++....+ ..+..
T Consensus 87 ~~n~l~kdL~~~n~~ir~~AL~~L~~i~--~~~~~~-----~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p-~~~~~ 158 (591)
T 2vgl_B 87 AVNSFVKDCEDPNPLIRALAVRTMGCIR--VDKITE-----YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINA-QMVED 158 (591)
T ss_dssp THHHHGGGSSSSSHHHHHHHHHHHHTCC--SGGGHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSC-CCHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCC--hHHHHH-----HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhCh-hhccc
Confidence 3556666777888888888888887775 233222 236789999999999999999999999876443 23334
Q ss_pred cCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccC
Q 021242 87 RGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALY 166 (315)
Q Consensus 87 ~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~ 166 (315)
.+.++.|..+|.+ .++.++..|+.+|..++........+.-..+.++.|+..+.. .++-.+...+++|..++..
T Consensus 159 ~~~~~~l~~lL~d----~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~--~~~~~q~~il~~l~~l~~~ 232 (591)
T 2vgl_B 159 QGFLDSLRDLIAD----SNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNE--CTEWGQIFILDCLSNYNPK 232 (591)
T ss_dssp HHHHHHHHHTTSC----SCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHH--CCHHHHHHHHHHHHTSCCC
T ss_pred ccHHHHHHHHhCC----CChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCC--CCchHHHHHHHHHHHhCCC
Confidence 5678999999986 688999999999999986543221111112447788888873 4777888888999888753
Q ss_pred CCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc----ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHH
Q 021242 167 PLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG----CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENA 242 (315)
Q Consensus 167 ~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~----~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a 242 (315)
++.. ....++.+..++. +.+..++..|+.++..+.. +++..+.+. ....+.|+.++. . ++.+|..+
T Consensus 233 ~~~~----~~~~l~~l~~~l~-~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~---d~~vr~~a 302 (591)
T 2vgl_B 233 DDRE----AQSICERVTPRLS-HANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS-G---EPEVQYVA 302 (591)
T ss_dssp SHHH----HHHHHHHHTTCSC-SSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT-S---CHHHHHHH
T ss_pred ChHH----HHHHHHHHHHHHc-CCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc-C---CccHHHHH
Confidence 3211 1234566666664 5677888889999888763 334333332 223455554443 2 45555555
Q ss_pred HHHHHHHhccCC-----------------HHHHHHHHHH------c---cCcHHHHHHHHhhCCHHHHHHHHHHHHHHhh
Q 021242 243 VSALLNLVNFGG-----------------ERAAEEVKEM------A---MQVADGIADVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 243 ~~~L~~l~~~~~-----------------~~~~~~i~~~------~---~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
+.+|..+..... ...+.+.++. . ..+++.|...+++.++.+|+.+.+.+..+..
T Consensus 303 L~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~ 382 (591)
T 2vgl_B 303 LRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAI 382 (591)
T ss_dssp HHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 555555543110 0011111100 0 1134556666777788888888887766653
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=98.92 E-value=3.1e-08 Score=99.26 Aligned_cols=275 Identities=12% Similarity=0.106 Sum_probs=179.0
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHhccCc-hhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhh--
Q 021242 7 TVRSLVTKLGSVSEQTRAEALAELRLLSKHDA-EIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSL-- 83 (315)
Q Consensus 7 ~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~-- 83 (315)
-++.+.+.+.+.++..|..|+.++..++.... ..-.... ..++|.|+..+.+.++.++..++++|..++..-...+
T Consensus 370 l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 448 (861)
T 2bpt_A 370 VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDP 448 (861)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCT
T ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCC
Confidence 34556667788899999999999999985532 2111111 2478888999988999999999999988875422110
Q ss_pred -hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcC-CC-chhhh-hhccccHHHHHHHhhccCCChHHHHHHHHH
Q 021242 84 -MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVV-DS-YRPII-GAKRDIIHSLIEIIKTRNSPLRSVKDALKA 159 (315)
Q Consensus 84 -i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~-~~-~~~~i-~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~a 159 (315)
-.-...++.++..+.+ . +.++..++++|.+++.. .+ ....+ .....+++.|+.++.+.+.++.++..++.+
T Consensus 449 ~~~~~~~l~~l~~~l~~----~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~a 523 (861)
T 2bpt_A 449 QQHLPGVVQACLIGLQD----H-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSA 523 (861)
T ss_dssp TTTHHHHHHHHHHHHTS----C-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc----C-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHH
Confidence 0123457788888875 3 78899999999998852 11 01111 112355788888887432236788889999
Q ss_pred HHHhccC-CCcHHHHHhhCCcHHHHHHHhcC--------------CCcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHH
Q 021242 160 LFGIALY-PLNRYQVIALGGVQPLFSLVVNG--------------GRAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGV 223 (315)
Q Consensus 160 L~~Ls~~-~~~~~~i~~~g~v~~L~~lL~~~--------------~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~ 223 (315)
|..+... ++.....+ ...+|.+++.+.+. ....++..++.+|.+++. .+....... ...++.
T Consensus 524 l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~ 601 (861)
T 2bpt_A 524 LTTMVEYATDTVAETS-ASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGL 601 (861)
T ss_dssp HHHHHHHCCGGGHHHH-HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHH
T ss_pred HHHHHHHcchhhHHHH-HHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHH
Confidence 9998873 33222222 24667777777421 122345668888888765 222111111 123677
Q ss_pred HHHHhhcCCCCCh-hHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhh
Q 021242 224 LVDLLDLGTGSGH-RVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 224 Lv~ll~~~~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
++..++.. +. .+++.++.++..++...++.....+ ...++.|...+.+.++.++..|..++..+..
T Consensus 602 l~~~l~~~---~~~~v~~~~~~~l~~l~~~~~~~~~~~l----~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~ 668 (861)
T 2bpt_A 602 FFRLLEKK---DSAFIEDDVFYAISALAASLGKGFEKYL----ETFSPYLLKALNQVDSPVSITAVGFIADISN 668 (861)
T ss_dssp HHHHHHST---TGGGTHHHHHHHHHHHHHHHGGGGHHHH----HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHccC---CCCcHHHHHHHHHHHHHHHHhhhHHHHH----HHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 77888764 45 7899999999888764333332333 3478888888887888899999988776654
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=98.85 E-value=9.8e-08 Score=92.79 Aligned_cols=258 Identities=17% Similarity=0.140 Sum_probs=176.1
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhh
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLM 84 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i 84 (315)
...++.+.+.|+++++.+|..|+.+|.++.. ++ +. ...++.+..+|++.++.+|..|+.++.++....+. .+
T Consensus 106 ~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~~----~~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~-~v 177 (618)
T 1w63_A 106 LLMTNCIKNDLNHSTQFVQGLALCTLGCMGS--SE----MC-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE-LM 177 (618)
T ss_dssp HHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC--HH----HH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG-GG
T ss_pred HHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC--HH----HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH-HH
Confidence 3467788999999999999999999999973 22 22 35688999999999999999999999998865432 22
Q ss_pred hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCc-hhhhhhccccHHHHHHHhhcc-------------CCCh
Q 021242 85 STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSY-RPIIGAKRDIIHSLIEIIKTR-------------NSPL 150 (315)
Q Consensus 85 ~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~-~~~i~~~~g~i~~Lv~ll~~~-------------~~~~ 150 (315)
.+.++.+..+|.+ .++.++..|+.+|..+...+.. ...+ ..++|.++.+|... ..++
T Consensus 178 --~~~~~~l~~lL~D----~d~~V~~~Al~~L~~i~~~~~~~~~~~---~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~ 248 (618)
T 1w63_A 178 --EMFLPATKNLLNE----KNHGVLHTSVVLLTEMCERSPDMLAHF---RKLVPQLVRILKNLIMSGYSPEHDVSGISDP 248 (618)
T ss_dssp --GGGGGGTTTSTTC----CCHHHHHHHHHHHHHHCCSHHHHHHHH---HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCH
T ss_pred --HHHHHHHHHHhCC----CCHhHHHHHHHHHHHHHHhChHHHHHH---HHHHHHHHHHHHHHHcCCCCccccccCCCCC
Confidence 2567777888876 6889999999999998864321 1122 24588888877631 1266
Q ss_pred HHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhc-----CCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHH
Q 021242 151 RSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVN-----GGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLV 225 (315)
Q Consensus 151 ~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~-----~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv 225 (315)
-.+...+++|..++..+.. ......+.|.+++.. +.+..+...|..++..+...+..+. .++..|.
T Consensus 249 ~~q~~il~~L~~l~~~~~~----~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~-----~a~~~L~ 319 (618)
T 1w63_A 249 FLQVRILRLLRILGRNDDD----SSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRV-----LAINILG 319 (618)
T ss_dssp HHHHHHHHHHHHHTTTCHH----HHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHH-----HHHHHHH
T ss_pred hHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHH-----HHHHHHH
Confidence 7778889999998874321 112344555555531 1123456667777777654332221 2456777
Q ss_pred HHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhCCC
Q 021242 226 DLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDDGN 299 (315)
Q Consensus 226 ~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~~~ 299 (315)
.++.+. ++.+|..++.+|..++... ...+ ......+..++.++++.+|..|..+|-.+....|
T Consensus 320 ~~L~~~---d~~vr~~aL~~L~~i~~~~-----p~~~---~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n 382 (618)
T 1w63_A 320 RFLLNN---DKNIRYVALTSLLKTVQTD-----HNAV---QRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNN 382 (618)
T ss_dssp HHHTCS---STTTHHHHHHHHHHHHHHH-----HHHH---GGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS
T ss_pred HHHhCC---CCchHHHHHHHHHHHHhhC-----HHHH---HHHHHHHHHHccCCChhHHHHHHHHHHHHccccc
Confidence 777764 6788888888888886531 2233 3356677777777788888888888877766554
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=3.5e-07 Score=88.90 Aligned_cols=258 Identities=12% Similarity=0.067 Sum_probs=179.8
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhh
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMS 85 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~ 85 (315)
.-++.+.+.|+++++.+|.+|+.++..+...+++.. .+.++.+.++|.+.++.++..|+.+|..++..+....-.
T Consensus 142 ~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~ 216 (618)
T 1w63_A 142 DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAH 216 (618)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHH
Confidence 346788889999999999999999999998776532 267888899999999999999999999998765321111
Q ss_pred hcCchHHHHHHHhcC----CC-------CCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhcc----CCCh
Q 021242 86 TRGLLDAISHVLRHH----ST-------STSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTR----NSPL 150 (315)
Q Consensus 86 ~~~~i~~L~~lL~~~----~~-------~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~----~~~~ 150 (315)
-...++.++.+|++. .+ ..++-.+.....+|..+...++. .. ..+++.|..++... +.+.
T Consensus 217 ~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~---~~--~~~~~~L~~l~~~~~~~~~~~~ 291 (618)
T 1w63_A 217 FRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDD---SS--EAMNDILAQVATNTETSKNVGN 291 (618)
T ss_dssp HHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHH---HH--HTTHHHHHHHHHTSCCSSTHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHH---HH--HHHHHHHHHHHhccccccchHH
Confidence 125688888877631 00 13567777888888888754321 11 23456666665410 1245
Q ss_pred HHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhc
Q 021242 151 RSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDL 230 (315)
Q Consensus 151 ~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~ 230 (315)
.+...|++++..+...+. +. ..++..|..++. +++..++..|+..|..++... ..++. .....++..+.+
T Consensus 292 aV~~ea~~~i~~l~~~~~----l~-~~a~~~L~~~L~-~~d~~vr~~aL~~L~~i~~~~---p~~~~-~~~~~i~~~l~d 361 (618)
T 1w63_A 292 AILYETVLTIMDIKSESG----LR-VLAINILGRFLL-NNDKNIRYVALTSLLKTVQTD---HNAVQ-RHRSTIVDCLKD 361 (618)
T ss_dssp HHHHHHHHHHHHSCCCHH----HH-HHHHHHHHHHHT-CSSTTTHHHHHHHHHHHHHHH---HHHHG-GGHHHHHHGGGS
T ss_pred HHHHHHHHHHHhcCCCHH----HH-HHHHHHHHHHHh-CCCCchHHHHHHHHHHHHhhC---HHHHH-HHHHHHHHHccC
Confidence 788899999999765321 22 246778888885 567889999999999887532 22222 345677888886
Q ss_pred CCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhh
Q 021242 231 GTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 231 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
. +..++..++.+|..++...+ . .. +++.|...+.+.++.+|..+...+..+..
T Consensus 362 ~---d~~Ir~~alelL~~l~~~~n--v-~~-------iv~eL~~~l~~~d~e~r~~~v~~I~~la~ 414 (618)
T 1w63_A 362 L---DVSIKRRAMELSFALVNGNN--I-RG-------MMKELLYFLDSCEPEFKADCASGIFLAAE 414 (618)
T ss_dssp S---CHHHHHHHHHHHHHHCCSSS--T-HH-------HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred C---ChhHHHHHHHHHHHHccccc--H-HH-------HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 5 78999999999999986432 1 22 33456666777788888888877666654
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=98.82 E-value=5.3e-07 Score=90.44 Aligned_cols=273 Identities=10% Similarity=0.087 Sum_probs=180.2
Q ss_pred hhHHHHHHHhCCC--CHHHHHHHHHHHHHHhccCchhhHHHHh--CCCHHHHHHHHcCC--CHHHHHHHHHHHHhcCccc
Q 021242 6 RTVRSLVTKLGSV--SEQTRAEALAELRLLSKHDAEIRPMISE--AGSIPYLAEILYSS--SHAFQENAAATLLNLSITS 79 (315)
Q Consensus 6 ~~i~~Lv~~L~~~--~~~~~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~la~~~ 79 (315)
.-++.+++.+.++ ++..|..++.++..++..-.. ..+.. ...++.+...+.+. +..++..|+.+|.++...-
T Consensus 128 ~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~--~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~ 205 (876)
T 1qgr_A 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT 205 (876)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCH--hhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4578889999888 899999999999999865211 11222 34567777788776 6889999999998876432
Q ss_pred ch---hhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCC--chhhhhhccccHHHHHHHhhccCCChHHHH
Q 021242 80 RD---SLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDS--YRPIIGAKRDIIHSLIEIIKTRNSPLRSVK 154 (315)
Q Consensus 80 ~~---~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~--~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~ 154 (315)
.. ........++.+...+.+ .+.+++..++.+|..+..... ....+. ..+++.++..+. +.++.++.
T Consensus 206 ~~~~~~~~~~~~il~~l~~~~~~----~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~l~~~~~~~~~--~~~~~v~~ 277 (876)
T 1qgr_A 206 KANFDKESERHFIMQVVCEATQC----PDTRVRVAALQNLVKIMSLYYQYMETYMG--PALFAITIEAMK--SDIDEVAL 277 (876)
T ss_dssp HHHHTSHHHHHHHHHHHHHHTTC----SSHHHHHHHHHHHHHHHHHSGGGCHHHHT--TTHHHHHHHHHT--CSSHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHHHHhc--CCchHHHH
Confidence 11 111112246666666664 578889999999999885322 122222 156788888777 45788899
Q ss_pred HHHHHHHHhccCCC---------------------cHHHHHhhCCcHHHHHHHhcC------CCcchHHHHHHHHHHHhc
Q 021242 155 DALKALFGIALYPL---------------------NRYQVIALGGVQPLFSLVVNG------GRAGIVEDASAVIAQIAG 207 (315)
Q Consensus 155 ~a~~aL~~Ls~~~~---------------------~~~~i~~~g~v~~L~~lL~~~------~~~~~~~~a~~~L~~L~~ 207 (315)
.|+..+.+++.... ...+-.-...++.+++.+... .+..++..+..+|..++.
T Consensus 278 ~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~ 357 (876)
T 1qgr_A 278 QGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLAT 357 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHH
Confidence 99988888875310 000000134466777777421 234567778888888765
Q ss_pred ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHH
Q 021242 208 CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKA 287 (315)
Q Consensus 208 ~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A 287 (315)
.-. +.+.. ..++.+...+.+. +..+|+.++.+|..++....+......+ ...++.|+..+.+.++.+|..|
T Consensus 358 ~~~--~~~~~-~~l~~l~~~l~~~---~~~~r~~a~~~l~~i~~~~~~~~~~~~~---~~~l~~l~~~l~d~~~~vr~~a 428 (876)
T 1qgr_A 358 CCE--DDIVP-HVLPFIKEHIKNP---DWRYRDAAVMAFGCILEGPEPSQLKPLV---IQAMPTLIELMKDPSVVVRDTA 428 (876)
T ss_dssp HHG--GGGHH-HHHHHHHHHTTCS---SHHHHHHHHHHHHHTSSSSCHHHHHHHH---HHHHHHHHHHHTCSSHHHHHHH
T ss_pred HCc--HhhHH-HHHHHHHHHccCC---ChHHHHHHHHHHHHHHcCCCHHHHHHHH---HHHHHHHHHHhCCCCHHHHHHH
Confidence 311 11111 2345555666654 7899999999999998644322222222 4588999999999999999999
Q ss_pred HHHHHHHhhC
Q 021242 288 VALLKILVDD 297 (315)
Q Consensus 288 ~~~L~~l~~~ 297 (315)
.++|..+...
T Consensus 429 ~~~l~~~~~~ 438 (876)
T 1qgr_A 429 AWTVGRICEL 438 (876)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988765
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=98.78 E-value=1.9e-08 Score=105.22 Aligned_cols=279 Identities=11% Similarity=0.068 Sum_probs=184.9
Q ss_pred ChhhhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc
Q 021242 1 MEVKRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR 80 (315)
Q Consensus 1 ~~~~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~ 80 (315)
|-.....++.+++.+.+++++.|..|...|.+....+...-..-.....++.|++.|.+.++.+|..|+.+|.+++..-.
T Consensus 1 ~~~~~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~ 80 (1230)
T 1u6g_C 1 MASASYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVK 80 (1230)
T ss_dssp ---CCHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSC
T ss_pred CCchHhHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCC
Confidence 44456789999999999999999999999998765431110001123567889999998999999999999988875432
Q ss_pred hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcC-CCc----hhhhhhccccHHHHHHHhhccCCChHHHHH
Q 021242 81 DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVV-DSY----RPIIGAKRDIIHSLIEIIKTRNSPLRSVKD 155 (315)
Q Consensus 81 ~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~-~~~----~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~ 155 (315)
... ....++.|+..+.+ +++.++..++.+|..++.. ... ...-.....++|.|+..+.+ ..++.++..
T Consensus 81 ~~~--~~~i~~~Ll~~l~d----~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~-~~~~~~~~~ 153 (1230)
T 1u6g_C 81 EYQ--VETIVDTLCTNMLS----DKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAK-QEDVSVQLE 153 (1230)
T ss_dssp HHH--HHHHHHHHHHHTTC----SSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSC-CSCHHHHHH
T ss_pred HHH--HHHHHHHHHHHhcC----CcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcC-CCchHHHHH
Confidence 221 12356777777775 5667888888899888742 221 00111123568999998873 257889999
Q ss_pred HHHHHHHhccC-CCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCC
Q 021242 156 ALKALFGIALY-PLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGS 234 (315)
Q Consensus 156 a~~aL~~Ls~~-~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~ 234 (315)
|+.+|..++.. ++.-.. .-...++.++..+. +++..++..|+.+|..++..... .+. ...++.++..+... .
T Consensus 154 al~~l~~~~~~~~~~l~~-~~~~ll~~l~~~L~-~~~~~vR~~a~~al~~l~~~~~~--~~~-~~~l~~l~~~L~~~--~ 226 (1230)
T 1u6g_C 154 ALDIMADMLSRQGGLLVN-FHPSILTCLLPQLT-SPRLAVRKRTIIALGHLVMSCGN--IVF-VDLIEHLLSELSKN--D 226 (1230)
T ss_dssp HHHHHHHHHHHTCSSCTT-THHHHHHHHGGGGG-CSSHHHHHHHHHHHHHHTTTC------C-TTHHHHHHHHHHHT--C
T ss_pred HHHHHHHHHHHhHhHHHH-HHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHhcCH--HHH-HHHHHHHHHHhccC--C
Confidence 99999998852 111000 11234556666664 56678899999999999764221 121 23478888888764 1
Q ss_pred ChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhC
Q 021242 235 GHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDD 297 (315)
Q Consensus 235 ~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~ 297 (315)
+...+..++.++..++...+.. +..+-...++.+...++++++.+|+.|...+..+...
T Consensus 227 ~~~~r~~a~~~l~~l~~~~~~~----~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~ 285 (1230)
T 1u6g_C 227 SMSTTRTYIQCIAAISRQAGHR----IGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRR 285 (1230)
T ss_dssp SSCSCTTHHHHHHHHHHHSSGG----GTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 3456666778888877644322 1111156788999999888999999999988877653
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=98.78 E-value=1e-07 Score=88.40 Aligned_cols=271 Identities=12% Similarity=0.067 Sum_probs=179.0
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCC--CHHHHHHHHHHHHhcCcccchhhh--
Q 021242 9 RSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSS--SHAFQENAAATLLNLSITSRDSLM-- 84 (315)
Q Consensus 9 ~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~la~~~~~~~i-- 84 (315)
..+++.|.+.++.+ ..+..+|..++..+.... .-.+.+|.|+..+.+. ++.+++.|+.+|..++..-....+
T Consensus 93 ~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~---~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~ 168 (462)
T 1ibr_B 93 NYVLQTLGTETYRP-SSASQCVAGIACAEIPVN---QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQD 168 (462)
T ss_dssp HHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT---CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGG
T ss_pred HHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc---ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHh
Confidence 45777887777677 788888888886532110 1157899999999888 899999999999988764321111
Q ss_pred hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCC-ch--hhhhhccccHHHHHHHhhccCCChHHHHHHHHHHH
Q 021242 85 STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDS-YR--PIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALF 161 (315)
Q Consensus 85 ~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~-~~--~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~ 161 (315)
.....++.+...+.+.. ++++++..++.++.++...-+ +- ..+. .-+++.+...+. ..++.++..++++|.
T Consensus 169 ~~~~ll~~l~~~l~~~~--~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~--~~l~~~l~~~~~--~~~~~vr~~~~~~l~ 242 (462)
T 1ibr_B 169 KSNEILTAIIQGMRKEE--PSNNVKLAATNALLNSLEFTKANFDKESER--HFIMQVVCEATQ--CPDTRVRVAALQNLV 242 (462)
T ss_dssp GHHHHHHHHHHHHSTTC--CCHHHHHHHHHHHHHHTTTTHHHHTSHHHH--HHHHHHHHHHTT--CSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHHHHHHHHhhhhhHHH--HHHHHHHHHhcC--CCCHHHHHHHHHHHH
Confidence 12346788888888620 168899999999998764211 10 1111 123566666666 457889999999999
Q ss_pred HhccCCCcH-HHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHh---------------------cC
Q 021242 162 GIALYPLNR-YQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKK---------------------CC 219 (315)
Q Consensus 162 ~Ls~~~~~~-~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~---------------------~~ 219 (315)
.++...... ...+..+.++.++..+. +.+..++..++..+..++........+.+ ..
T Consensus 243 ~l~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (462)
T 1ibr_B 243 KIMSLYYQYMETYMGPALFAITIEAMK-SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQY 321 (462)
T ss_dssp HHHHHCGGGCTTTTTTTHHHHHHHHHH-CSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhh
Confidence 988632211 11111256777777775 56778888899988888764321111111 12
Q ss_pred CHHHHHHHhhcCC----CCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 021242 220 GIGVLVDLLDLGT----GSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILV 295 (315)
Q Consensus 220 ~i~~Lv~ll~~~~----~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~ 295 (315)
.+|.++..+...+ +.+...+..+..+|..++...++ .++ ..+++.+...+++.+.++|..|..+|..+.
T Consensus 322 l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~----~~~---~~~~~~l~~~l~~~~~~~r~aal~~l~~l~ 394 (462)
T 1ibr_B 322 LVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED----DIV---PHVLPFIKEHIKNPDWRYRDAAVMAFGCIL 394 (462)
T ss_dssp HHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT----THH---HHHHHHHHHHTTCSSHHHHHHHHHHHHHTS
T ss_pred ccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH----HHH---HHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 3566666665321 12457888999999999875432 232 346777888888899999999999999998
Q ss_pred hC
Q 021242 296 DD 297 (315)
Q Consensus 296 ~~ 297 (315)
+.
T Consensus 395 ~~ 396 (462)
T 1ibr_B 395 EG 396 (462)
T ss_dssp SS
T ss_pred cC
Confidence 64
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=98.77 E-value=1.6e-07 Score=94.36 Aligned_cols=277 Identities=13% Similarity=0.077 Sum_probs=173.8
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHhccCc-hhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhh--
Q 021242 7 TVRSLVTKLGSVSEQTRAEALAELRLLSKHDA-EIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSL-- 83 (315)
Q Consensus 7 ~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~-- 83 (315)
-++.+.+.+.++++..|..|+.++..++.... +..... -...+|.++..+++.++.++..|+++|.+++..-....
T Consensus 367 ~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~-~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~ 445 (876)
T 1qgr_A 367 VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIN 445 (876)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSS
T ss_pred HHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhccc
Confidence 35566677788899999999999999986533 211111 14579999999999999999999999999886533211
Q ss_pred -hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCC------------chhhh-hhccccHHHHHHHhhccC-C
Q 021242 84 -MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDS------------YRPII-GAKRDIIHSLIEIIKTRN-S 148 (315)
Q Consensus 84 -i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~------------~~~~i-~~~~g~i~~Lv~ll~~~~-~ 148 (315)
-.-...++.|+..+.+ ++.++..++++|.+++.... ....+ .....+++.|+..+.... +
T Consensus 446 ~~~l~~~l~~l~~~l~~-----~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~ 520 (876)
T 1qgr_A 446 DVYLAPLLQCLIEGLSA-----EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGH 520 (876)
T ss_dssp TTTHHHHHHHHHHHTTS-----CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSC
T ss_pred HHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcc
Confidence 1123457777777775 37888999999999985311 01111 112356788888887421 1
Q ss_pred ChHHHHHHHHHHHHhccC-CCcHHHHHhhCCcHHHHHHHhc----------CCC----cchHHHHHHHHHHHhcC-h-hh
Q 021242 149 PLRSVKDALKALFGIALY-PLNRYQVIALGGVQPLFSLVVN----------GGR----AGIVEDASAVIAQIAGC-E-ES 211 (315)
Q Consensus 149 ~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~v~~L~~lL~~----------~~~----~~~~~~a~~~L~~L~~~-~-~~ 211 (315)
+..++..++.+|..+... +...... -...++.+++.+.. +.+ ..++..++.++..++.. + ..
T Consensus 521 ~~~~r~~~~~~l~~l~~~~~~~~~~~-~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~ 599 (876)
T 1qgr_A 521 QNNLRSSAYESLMEIVKNSAKDCYPA-VQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQD 599 (876)
T ss_dssp STTHHHHHHHHHHHHHHTCCSTTHHH-HHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHH
T ss_pred hhhHHHHHHHHHHHHHHHCchhhHHH-HHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhh
Confidence 345667788888877763 2222222 23556666666542 111 23456678888888653 2 21
Q ss_pred HHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhC-CHHHHHHHHHH
Q 021242 212 VDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNG-SAKGKTKAVAL 290 (315)
Q Consensus 212 ~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~-~~~~k~~A~~~ 290 (315)
..... ...++.++.++++.. ....+++.++.++..++...++.....+ ..+++.|...+++. ++.++..|.++
T Consensus 600 ~~~~~-~~l~~~l~~~l~~~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~----~~~~~~l~~~l~~~~~~~vr~~a~~~ 673 (876)
T 1qgr_A 600 ALQIS-DVVMASLLRMFQSTA-GSGGVQEDALMAVSTLVEVLGGEFLKYM----EAFKPFLGIGLKNYAEYQVCLAAVGL 673 (876)
T ss_dssp HHTTH-HHHHHHHHHHC------CCHHHHHHHHHHHHHHHHHGGGGGGGH----HHHHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred hhHHH-HHHHHHHHHHHHhcc-CCCCccHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHHcCcchHHHHHHHHHH
Confidence 11111 124677788887530 0147889999999998864322222222 23678888888886 89999999988
Q ss_pred HHHHhh
Q 021242 291 LKILVD 296 (315)
Q Consensus 291 L~~l~~ 296 (315)
+..+..
T Consensus 674 l~~l~~ 679 (876)
T 1qgr_A 674 VGDLCR 679 (876)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877754
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=98.63 E-value=4.6e-06 Score=83.47 Aligned_cols=274 Identities=12% Similarity=0.086 Sum_probs=175.8
Q ss_pred hhHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCchhhHHHH--hCCCHHHHHHHHcCC--CHHHHHHHHHHHHhcCcccc
Q 021242 6 RTVRSLVTKLGSV-SEQTRAEALAELRLLSKHDAEIRPMIS--EAGSIPYLAEILYSS--SHAFQENAAATLLNLSITSR 80 (315)
Q Consensus 6 ~~i~~Lv~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~--~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~la~~~~ 80 (315)
.-++.|++.+.++ ++..+..|+..+..+++.-....+.+. -...++.++..+.+. ++.++..|+.+|.++...-+
T Consensus 134 ~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~ 213 (861)
T 2bpt_A 134 ELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIK 213 (861)
T ss_dssp HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4578888899888 899999999999998864221100001 123466677777776 78999999999987642211
Q ss_pred ---hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCC--chhhhhhccccHHHHHHHhhccCCChHHHHH
Q 021242 81 ---DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDS--YRPIIGAKRDIIHSLIEIIKTRNSPLRSVKD 155 (315)
Q Consensus 81 ---~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~--~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~ 155 (315)
.........++.|...+.+ ++.+++..++.+|..++.... ....+.. .+++.+...+. +.++.++..
T Consensus 214 ~~~~~~~~~~~ll~~l~~~~~~----~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~--~l~~~~~~~~~--~~~~~vr~~ 285 (861)
T 2bpt_A 214 NNMEREGERNYLMQVVCEATQA----EDIEVQAAAFGCLCKIMSKYYTFMKPYMEQ--ALYALTIATMK--SPNDKVASM 285 (861)
T ss_dssp HHHTSHHHHHHHHHHHHHHHTC----SCHHHHHHHHHHHHHHHHHHGGGCHHHHHH--THHHHHHHHTT--CSSHHHHHH
T ss_pred HHccChhHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHc--CCcHHHHHH
Confidence 1111112246666666665 678999999999998885322 1222211 45666667776 457889999
Q ss_pred HHHHHHHhccCCC------------------cHHHHHhhCCcHHHHHHHhcC------CCcchHHHHHHHHHHHhcChhh
Q 021242 156 ALKALFGIALYPL------------------NRYQVIALGGVQPLFSLVVNG------GRAGIVEDASAVIAQIAGCEES 211 (315)
Q Consensus 156 a~~aL~~Ls~~~~------------------~~~~i~~~g~v~~L~~lL~~~------~~~~~~~~a~~~L~~L~~~~~~ 211 (315)
|+..+..++.... .....+ ...+|.++..+... .+..++..+..+|..++..-.
T Consensus 286 a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~- 363 (861)
T 2bpt_A 286 TVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG- 363 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG-
T ss_pred HHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc-
Confidence 9999988876321 111111 45677788887531 123466778888888865311
Q ss_pred HHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHH
Q 021242 212 VDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALL 291 (315)
Q Consensus 212 ~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L 291 (315)
..+. ...++.+...+.+. +...++.++.++..++....+......+ ..+++.|...+.+.++.+|..|.++|
T Consensus 364 -~~~~-~~l~~~l~~~l~~~---~~~~r~~a~~~l~~i~~~~~~~~~~~~l---~~il~~l~~~l~d~~~~vr~~a~~~l 435 (861)
T 2bpt_A 364 -NHIL-EPVLEFVEQNITAD---NWRNREAAVMAFGSIMDGPDKVQRTYYV---HQALPSILNLMNDQSLQVKETTAWCI 435 (861)
T ss_dssp -GGGH-HHHHHHHHHHTTCS---SHHHHHHHHHHHHHTSSSSCHHHHHHHH---HHHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred -HhHH-HHHHHHHHHHcCCC---ChhHHHHHHHHHHHHHcCCCHHHHHHHH---HHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 1111 01245555556553 7889999999999998643322222222 34788888888889999999999988
Q ss_pred HHHhhC
Q 021242 292 KILVDD 297 (315)
Q Consensus 292 ~~l~~~ 297 (315)
..+...
T Consensus 436 ~~l~~~ 441 (861)
T 2bpt_A 436 GRIADS 441 (861)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877654
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.50 E-value=2.8e-06 Score=70.68 Aligned_cols=186 Identities=13% Similarity=0.096 Sum_probs=140.8
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc---h
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR---D 81 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~---~ 81 (315)
+..+..|.++|...++.++..++.+|..+.+.-+.......-...+|.++.++++.|..+--.|+++|.-+-.+.+ +
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 3478899999999999999999999999998754444444445569999999999999999999999977766543 2
Q ss_pred hhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHH
Q 021242 82 SLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALF 161 (315)
Q Consensus 82 ~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~ 161 (315)
... -....|.+++++ +++-....++..+..+...... ..++..+++++. +.++.++..|+++|.
T Consensus 112 ~y~---Kl~~aL~dlik~----~~~il~~eaae~Lgklkv~~~~-------~~V~~~l~sLl~--Skd~~vK~agl~~L~ 175 (265)
T 3b2a_A 112 TFL---KAAKTLVSLLES----PDDMMRIETIDVLSKLQPLEDS-------KLVRTYINELVV--SPDLYTKVAGFCLFL 175 (265)
T ss_dssp HHH---HHHHHHHHHTTS----CCHHHHHHHHHHHHHCCBSCCC-------HHHHHHHHHHHT--CSSHHHHHHHHHHHH
T ss_pred HHH---HHHHHHHHHhcC----CCchHHHHHHHHhCcCCcccch-------HHHHHHHHHHHh--CCChhHHHHHHHHHH
Confidence 222 146778888886 7888899999999998322222 245677888886 569999999999999
Q ss_pred HhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcCh
Q 021242 162 GIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCE 209 (315)
Q Consensus 162 ~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~ 209 (315)
+++...+...-+ .+++..+-.+|. +.++.+++.|+.+|-.+.+.+
T Consensus 176 eia~~S~D~~i~--~~I~~eI~elL~-~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 176 NMLNSSADSGHL--TLILDEIPSLLQ-NDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp HHGGGCSSCCCG--GGTTTTHHHHHT-CSCHHHHHHHHHHHHHHTTSC
T ss_pred HhhcccCCHHHH--HHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCc
Confidence 999843222211 345566777886 468889999999999987753
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=98.47 E-value=3.2e-08 Score=76.29 Aligned_cols=122 Identities=12% Similarity=0.101 Sum_probs=91.4
Q ss_pred hhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhh
Q 021242 4 KRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSL 83 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~ 83 (315)
....++.++..|+++++.+|..|++.|..+... .++.|+.+|++.++.+|..|+++|.++.
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~~~~vR~~A~~aL~~~~------- 70 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIGNFQ------- 70 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGGGCSCHHHHHHHHHHHGGGC-------
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHHcCCCHHHHHHHHHHHHhcC-------
Confidence 345678899999999999999999888766321 2799999999999999999999998875
Q ss_pred hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHh
Q 021242 84 MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGI 163 (315)
Q Consensus 84 i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~L 163 (315)
....++.|+..|++ +++.++..++++|.++. . ...++.|+.+++ +.++.++..|..+|.+|
T Consensus 71 --~~~a~~~L~~~L~d----~~~~VR~~A~~aL~~~~----------~-~~a~~~L~~~l~--d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 71 --DERAVEPLIKLLED----DSGFVRSGAARSLEQIG----------G-ERVRAAMEKLAE--TGTGFARKVAVNYLETH 131 (131)
T ss_dssp --SHHHHHHHHHHHHH----CCTHHHHHHHHHHHHHC----------S-HHHHHHHHHHTT--SCCTHHHHHHHHHGGGC
T ss_pred --CHHHHHHHHHHHcC----CCHHHHHHHHHHHHHhC----------c-HHHHHHHHHHHh--CCCHHHHHHHHHHHHhC
Confidence 23468999999987 67899999999999864 2 234899999998 56889999999988653
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.46 E-value=8.2e-07 Score=75.64 Aligned_cols=181 Identities=10% Similarity=0.103 Sum_probs=133.6
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHhccCchhh-HHHHhCCCHHHHHHHHc-CCCHHHHHHHHHHHHhcCcccchhh-hhh
Q 021242 10 SLVTKLGSVSEQTRAEALAELRLLSKHDAEIR-PMISEAGSIPYLAEILY-SSSHAFQENAAATLLNLSITSRDSL-MST 86 (315)
Q Consensus 10 ~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~-~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~la~~~~~~~-i~~ 86 (315)
.+.+.+.+.++..|..|+..|..+....+... ..+ ..+++.|...+. +.+..++..|+.+|..++..-.... -.-
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 57888999999999999999999986632211 011 234777888884 8899999999999999986533221 112
Q ss_pred cCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccC
Q 021242 87 RGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALY 166 (315)
Q Consensus 87 ~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~ 166 (315)
...++.|+..+.+ .+..++..+..+|..+..... + ..+++.+...++ +.++.++..++..|..+...
T Consensus 97 ~~ilp~ll~~l~d----~~~~vr~~a~~aL~~~~~~~~----~---~~ll~~l~~~l~--~~~~~vr~~~l~~l~~~l~~ 163 (242)
T 2qk2_A 97 SACVPSLLEKFKE----KKPNVVTALREAIDAIYASTS----L---EAQQESIVESLS--NKNPSVKSETALFIARALTR 163 (242)
T ss_dssp HHHHHHHHHGGGC----CCHHHHHHHHHHHHHHHTTSC----H---HHHHHHHHHHTT--CSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHcCC----H---HHHHHHHHHHHc--CCChHHHHHHHHHHHHHHHH
Confidence 3468888898886 678999999999999876432 1 245888888888 56899999999999995443
Q ss_pred --CCc-HHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc
Q 021242 167 --PLN-RYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG 207 (315)
Q Consensus 167 --~~~-~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~ 207 (315)
++. -...+ ...+|.++.++. +++..++..|..++..++.
T Consensus 164 ~~~~~~~~~~l-~~l~p~l~~~l~-D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 164 TQPTALNKKLL-KLLTTSLVKTLN-EPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp CCGGGCCHHHH-HHHHHHHHHHHT-SSCHHHHHHHHHHHHHHHH
T ss_pred cCCCCccHHHH-HHHHHHHHHHhc-CCChHHHHHHHHHHHHHHH
Confidence 221 11222 367889999995 6788899999998888764
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=98.45 E-value=1.3e-06 Score=91.37 Aligned_cols=228 Identities=13% Similarity=0.116 Sum_probs=156.0
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchh---
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDS--- 82 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~--- 82 (315)
..++.+++.|.+.++++|..|+.+|..++..-+. ..+ ..+++.|+..+.+.++.+|..|..+|..++..-...
T Consensus 48 ~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~ 123 (1230)
T 1u6g_C 48 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSG 123 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HHH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HHH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccc
Confidence 4577899999999999999999999999865333 111 345788888888888889999999998776542211
Q ss_pred --h--hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc-CCCchhhhhhccccHHHHHHHhhccCCChHHHHHHH
Q 021242 83 --L--MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV-VDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDAL 157 (315)
Q Consensus 83 --~--i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~ 157 (315)
. -.-+..+|.|+..+.+ .++...+..+..++..++. ..+.-. .....+++.|+..+. +.++.++..|+
T Consensus 124 ~~~~~~~~~~llp~L~~~l~~---~~~~~~~~~al~~l~~~~~~~~~~l~--~~~~~ll~~l~~~L~--~~~~~vR~~a~ 196 (1230)
T 1u6g_C 124 SALAANVCKKITGRLTSAIAK---QEDVSVQLEALDIMADMLSRQGGLLV--NFHPSILTCLLPQLT--SPRLAVRKRTI 196 (1230)
T ss_dssp CCTHHHHHHHHHHHHHHHHSC---CSCHHHHHHHHHHHHHHHHHTCSSCT--TTHHHHHHHHGGGGG--CSSHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcC---CCchHHHHHHHHHHHHHHHHhHhHHH--HHHHHHHHHHHHHHc--CCcHHHHHHHH
Confidence 1 1134578888888873 1577889999999999884 222111 111345778888887 45788999999
Q ss_pred HHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcC-hhhHHHHHh--cCCHHHHHHHhhcCCCC
Q 021242 158 KALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGC-EESVDEFKK--CCGIGVLVDLLDLGTGS 234 (315)
Q Consensus 158 ~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~--~~~i~~Lv~ll~~~~~~ 234 (315)
.+|..++...... + -...++.+++.|.+..+...+..++.++..++.. +. .+.. ...++.++..+.+.
T Consensus 197 ~al~~l~~~~~~~--~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~l~~~ll~~l~d~--- 267 (1230)
T 1u6g_C 197 IALGHLVMSCGNI--V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH---RIGEYLEKIIPLVVKFCNVD--- 267 (1230)
T ss_dssp HHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG---GGTTSCTTHHHHHHHHHSSC---
T ss_pred HHHHHHHHhcCHH--H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHhcCC---
Confidence 9999998743322 2 2356788888886443345566677777777542 21 2211 12478888888754
Q ss_pred ChhHHHHHHHHHHHHhccC
Q 021242 235 GHRVKENAVSALLNLVNFG 253 (315)
Q Consensus 235 ~~~~~~~a~~~L~~l~~~~ 253 (315)
++.+++.+..++..++...
T Consensus 268 ~~~vR~~a~~~l~~l~~~~ 286 (1230)
T 1u6g_C 268 DDELREYCIQAFESFVRRC 286 (1230)
T ss_dssp CTTTHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHHHHHC
Confidence 7788999888888887644
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=98.41 E-value=2.1e-05 Score=76.43 Aligned_cols=259 Identities=14% Similarity=0.119 Sum_probs=165.7
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHH--cCCCHHHHHHHHHHHHhcCcccchhh
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEIL--YSSSHAFQENAAATLLNLSITSRDSL 83 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL--~~~~~~~~~~a~~~L~~la~~~~~~~ 83 (315)
..++.+...|+++++.+|.-|+.+|+++.. ++ +. ...+|.+.++| .+.++-++..|+.++.++....+ ..
T Consensus 111 L~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e----~~-~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p-~~ 182 (621)
T 2vgl_A 111 LINNAIKNDLASRNPTFMGLALHCIANVGS--RE----MA-EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP-DL 182 (621)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHCC--HH----HH-HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG-GG
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhhccCC--HH----HH-HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh-hh
Confidence 356678888899999999999999999963 33 22 24678899999 88899999999999988876443 33
Q ss_pred hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhh----ccCC-----------
Q 021242 84 MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIK----TRNS----------- 148 (315)
Q Consensus 84 i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~----~~~~----------- 148 (315)
+...+.++.+.++|.+ .++.++..|..++..++..+.. .+ ..++|.+++.|. ...-
T Consensus 183 ~~~~~~~~~l~~lL~d----~d~~V~~~a~~~l~~i~~~~~~--~~---~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~ 253 (621)
T 2vgl_A 183 VPMGDWTSRVVHLLND----QHLGVVTAATSLITTLAQKNPE--EF---KTSVSLAVSRLSRIVTSASTDLQDYTYYFVP 253 (621)
T ss_dssp CCCCSCHHHHHHHTTC----SCHHHHHHHHHHHHHHHHHCHH--HH---TTHHHHHHHHHHHHHHCCSSSCSTTEETTEE
T ss_pred cCchhHHHHHHHHhCC----CCccHHHHHHHHHHHHHHhChH--HH---HHHHHHHHHHHHHHHhCCCCCccchhhcCCC
Confidence 3235789999999986 6888888999999998753321 12 133555554443 1101
Q ss_pred ChHHHHHHHHHHHHhccCC--CcHHHHHhhCCcHHHHHHHhcCC--------Cc--chHHHHHHHHHHHhcChhhHHHHH
Q 021242 149 PLRSVKDALKALFGIALYP--LNRYQVIALGGVQPLFSLVVNGG--------RA--GIVEDASAVIAQIAGCEESVDEFK 216 (315)
Q Consensus 149 ~~~~~~~a~~aL~~Ls~~~--~~~~~i~~~g~v~~L~~lL~~~~--------~~--~~~~~a~~~L~~L~~~~~~~~~i~ 216 (315)
++-.+...++.|..++..+ +.+..+.+ .++.++..+...+ +. .+.-.|..++..+...++-+.
T Consensus 254 ~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~--- 328 (621)
T 2vgl_A 254 APWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV--- 328 (621)
T ss_dssp SHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH---
T ss_pred CchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHH---
Confidence 4567777888888887632 23333322 3333333321111 11 455556666666654332222
Q ss_pred hcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHh-hCCHHHHHHHHHHHHHHh
Q 021242 217 KCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQ-NGSAKGKTKAVALLKILV 295 (315)
Q Consensus 217 ~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~-~~~~~~k~~A~~~L~~l~ 295 (315)
.++..|..++.+. ++.+|..++..|..++....+ ...++ .....+...+. ++++.+|..|..+|-.+.
T Consensus 329 --~~~~~L~~~L~~~---~~niry~aL~~l~~l~~~~~~---~~~~~---~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~ 397 (621)
T 2vgl_A 329 --RACNQLGQFLQHR---ETNLRYLALESMCTLASSEFS---HEAVK---THIETVINALKTERDVSVRQRAVDLLYAMC 397 (621)
T ss_dssp --HHHHHHHHHSSCS---CHHHHHHHHHHHHHHTTCTTT---HHHHH---TTHHHHHHHHTTCCCHHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHhcCC---CcchHHHHHHHHHHHHhccCc---HHHHH---HHHHHHHHHhccCCCHhHHHHHHHHHHHHc
Confidence 2345666777643 678888888888888764321 12332 35566666677 677788888887776665
Q ss_pred hC
Q 021242 296 DD 297 (315)
Q Consensus 296 ~~ 297 (315)
..
T Consensus 398 ~~ 399 (621)
T 2vgl_A 398 DR 399 (621)
T ss_dssp CH
T ss_pred Ch
Confidence 44
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=98.39 E-value=7.5e-05 Score=72.48 Aligned_cols=259 Identities=12% Similarity=0.125 Sum_probs=167.0
Q ss_pred hhHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhh
Q 021242 6 RTVRSLVTKL--GSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSL 83 (315)
Q Consensus 6 ~~i~~Lv~~L--~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~ 83 (315)
.-++.+.+.| .+.+|.+|.+|+.++..+...+++. +...+.++.+.++|.+.++.++..|+.+|..++.++....
T Consensus 146 ~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~ 222 (621)
T 2vgl_A 146 AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEF 222 (621)
T ss_dssp HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHH
Confidence 3456777888 8889999999999999999876642 2225899999999999999999999999999876654321
Q ss_pred hhhcCchHHHH----HHHhcCCCC---------CCHHHHHHHHHHHHHhhcCCC--chhhhhhccccHHHHHHHhhc---
Q 021242 84 MSTRGLLDAIS----HVLRHHSTS---------TSSAAVQSSAATLHSLLVVDS--YRPIIGAKRDIIHSLIEIIKT--- 145 (315)
Q Consensus 84 i~~~~~i~~L~----~lL~~~~~~---------~~~~~~~~a~~~L~~Ls~~~~--~~~~i~~~~g~i~~Lv~ll~~--- 145 (315)
...++.++ +++..+... .++-.+......|..+...++ .+..+. .+++.++..+..
T Consensus 223 ---~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~---~~L~~il~~~~~~~k 296 (621)
T 2vgl_A 223 ---KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT---ECLETILNKAQEPPK 296 (621)
T ss_dssp ---TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH---HHHHHHHHHHHSCCS
T ss_pred ---HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH---HHHHHHHHhhccCcc
Confidence 12344444 444321110 145566666666666654222 111111 123444433221
Q ss_pred ------cCCChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcC
Q 021242 146 ------RNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCC 219 (315)
Q Consensus 146 ------~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~ 219 (315)
.+....+...|.+++..+..+++.. ..++..|..++. +++..++..++..|..++........+. .
T Consensus 297 s~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~-----~~~~~~L~~~L~-~~~~niry~aL~~l~~l~~~~~~~~~~~--~ 368 (621)
T 2vgl_A 297 SKKVQHSNAKNAVLFEAISLIIHHDSEPNLL-----VRACNQLGQFLQ-HRETNLRYLALESMCTLASSEFSHEAVK--T 368 (621)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHCCCHHHH-----HHHHHHHHHHSS-CSCHHHHHHHHHHHHHHTTCTTTHHHHH--T
T ss_pred cccccccchHHHHHHHHHHHHHhcCCcHHHH-----HHHHHHHHHHhc-CCCcchHHHHHHHHHHHHhccCcHHHHH--H
Confidence 0012377788999999986433222 245667888885 5678889999999999977542223332 3
Q ss_pred CHHHHHHHhh-cCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 021242 220 GIGVLVDLLD-LGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKIL 294 (315)
Q Consensus 220 ~i~~Lv~ll~-~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l 294 (315)
....++..+. +. +..++..++.+|..++.. .....+ +..|...+...++..+..+...+..+
T Consensus 369 ~~~~i~~~L~~d~---d~~Ir~~aL~lL~~l~~~---~Nv~~I-------v~eL~~yl~~~d~~~~~~~v~~I~~l 431 (621)
T 2vgl_A 369 HIETVINALKTER---DVSVRQRAVDLLYAMCDR---SNAQQI-------VAEMLSYLETADYSIREEIVLKVAIL 431 (621)
T ss_dssp THHHHHHHHTTCC---CHHHHHHHHHHHHHHCCH---HHHHHH-------HHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCC---CHhHHHHHHHHHHHHcCh---hhHHHH-------HHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4677788887 54 788999999999999742 333333 44666777777777777766644444
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.27 E-value=7.3e-06 Score=70.27 Aligned_cols=189 Identities=10% Similarity=0.097 Sum_probs=131.5
Q ss_pred HHHHhCCCCHHHHHHHHHHHHH-HhccCchhhHHHHh-CCCHHHHHHHH-cCCCHHHHHHHHHHHHhcCcccc-hhhh--
Q 021242 11 LVTKLGSVSEQTRAEALAELRL-LSKHDAEIRPMISE-AGSIPYLAEIL-YSSSHAFQENAAATLLNLSITSR-DSLM-- 84 (315)
Q Consensus 11 Lv~~L~~~~~~~~~~a~~~L~~-l~~~~~~~~~~i~~-~g~i~~Lv~lL-~~~~~~~~~~a~~~L~~la~~~~-~~~i-- 84 (315)
+-+.+.++++..|..|+..|.. +....+.....-.+ ...+..|...+ ++.+..++..|+.+|..++.+-+ ..+-
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 4567789999999999999999 87543321100011 13466777788 67889999999999999985433 2211
Q ss_pred hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc-CCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHh
Q 021242 85 STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV-VDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGI 163 (315)
Q Consensus 85 ~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~L 163 (315)
.-...++.++..+++ ....++..+..++..+.. .++.... ..-..+++.|+..++ +.++.++..++.+|..+
T Consensus 101 y~~~llp~ll~~l~d----kk~~V~~aa~~al~~i~~~~~~~~~~-~~l~~ll~~l~~~l~--~k~~~vk~~al~~l~~~ 173 (249)
T 2qk1_A 101 YVSLVFTPLLDRTKE----KKPSVIEAIRKALLTICKYYDPLASS-GRNEDMLKDILEHMK--HKTPQIRMECTQLFNAS 173 (249)
T ss_dssp HHHHHHHHHHHGGGC----CCHHHHHHHHHHHHHHHHHSCTTCTT-CTTHHHHHHHHHHTT--CSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHHccccccC-CcHHHHHHHHHHHHc--CCChHHHHHHHHHHHHH
Confidence 122368888888886 567888888888888875 3222211 112256889999998 55899999999999988
Q ss_pred ccCCCc--HH--HHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc
Q 021242 164 ALYPLN--RY--QVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG 207 (315)
Q Consensus 164 s~~~~~--~~--~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~ 207 (315)
...... .. ..+....+|.+.+++. +++.++++.|..++..++.
T Consensus 174 ~~~~~~~~~~l~~~l~~~iip~l~~~l~-D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 174 MKEEKDGYSTLQRYLKDEVVPIVIQIVN-DTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp HHHCCSCSHHHHHHHTTTHHHHHHHHHT-CSSHHHHHHHHHHHHHHHH
T ss_pred HHHcCCcchhHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHH
Confidence 863321 11 1122578999999995 6788899999888888743
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.17 E-value=4.9e-05 Score=64.49 Aligned_cols=184 Identities=15% Similarity=0.126 Sum_probs=129.0
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcC-CCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCc
Q 021242 91 DAISHVLRHHSTSTSSAAVQSSAATLHSLLVV-DSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLN 169 (315)
Q Consensus 91 ~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~ 169 (315)
+.+.+.+.+ .+-..|..++..|..+... +.... .....+++.|...+.. +.+..++..|+.+|..|+..-..
T Consensus 18 ~~l~~~l~s----~~w~~R~~a~~~L~~l~~~~~~~~~--~~~~~i~~~L~~~l~k-d~~~~V~~~a~~~l~~la~~l~~ 90 (242)
T 2qk2_A 18 KDFYDKLEE----KKWTLRKESLEVLEKLLTDHPKLEN--GEYGALVSALKKVITK-DSNVVLVAMAGKCLALLAKGLAK 90 (242)
T ss_dssp TTHHHHHTC----SSHHHHHHHHHHHHHHHHHCSSBCC--CCCHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHhhhcc----CCHHHHHHHHHHHHHHHccCCCCCC--CCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHHhh
Confidence 346777776 6788888999999988754 33111 1123557888888831 35788999999999999963211
Q ss_pred HHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHH
Q 021242 170 RYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNL 249 (315)
Q Consensus 170 ~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l 249 (315)
...-.-...+|.++..+. +++..+++.+..+|..+..... -. ..++.+...+++. ++.+|+.++..|..+
T Consensus 91 ~~~~~~~~ilp~ll~~l~-d~~~~vr~~a~~aL~~~~~~~~-~~-----~ll~~l~~~l~~~---~~~vr~~~l~~l~~~ 160 (242)
T 2qk2_A 91 RFSNYASACVPSLLEKFK-EKKPNVVTALREAIDAIYASTS-LE-----AQQESIVESLSNK---NPSVKSETALFIARA 160 (242)
T ss_dssp GGHHHHHHHHHHHHHGGG-CCCHHHHHHHHHHHHHHHTTSC-HH-----HHHHHHHHHTTCS---CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHcCC-HH-----HHHHHHHHHHcCC---ChHHHHHHHHHHHHH
Confidence 111112356888888885 5677889999999999876432 11 1357788888875 889999999999996
Q ss_pred hccCCHH--HHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 021242 250 VNFGGER--AAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILV 295 (315)
Q Consensus 250 ~~~~~~~--~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~ 295 (315)
.....+. ....+ ...+|.|..++.+.++++|..|...+..+.
T Consensus 161 l~~~~~~~~~~~~l----~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~ 204 (242)
T 2qk2_A 161 LTRTQPTALNKKLL----KLLTTSLVKTLNEPDPTVRDSSAEALGTLI 204 (242)
T ss_dssp HTTCCGGGCCHHHH----HHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCccHHHH----HHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 5433222 12233 237899999999999999999999877764
|
| >1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 | Back alignment and structure |
|---|
Probab=98.17 E-value=0.00012 Score=67.58 Aligned_cols=237 Identities=13% Similarity=0.162 Sum_probs=145.3
Q ss_pred HHHHHcC-CCHHHHHHHHHHHHhcCcccc-hhhhhhc--CchHHHHHHHhcC-------------CCCCCHHHHHHHHHH
Q 021242 53 LAEILYS-SSHAFQENAAATLLNLSITSR-DSLMSTR--GLLDAISHVLRHH-------------STSTSSAAVQSSAAT 115 (315)
Q Consensus 53 Lv~lL~~-~~~~~~~~a~~~L~~la~~~~-~~~i~~~--~~i~~L~~lL~~~-------------~~~~~~~~~~~a~~~ 115 (315)
++..|.. ++...+..++.+|..+...++ +..+.+. ..++.++.+++.. ++....+.+-.++-+
T Consensus 172 ~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~ 251 (480)
T 1ho8_A 172 LINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLL 251 (480)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHH
T ss_pred HHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHH
Confidence 3444444 345556778889988887776 5444333 2477776655421 111135667789999
Q ss_pred HHHhhcCCCchhhhhhcccc--HHHHHHHhhccCCChHHHHHHHHHHHHhccCC-CcH----HHH-HhhCCcHHHHHHHh
Q 021242 116 LHSLLVVDSYRPIIGAKRDI--IHSLIEIIKTRNSPLRSVKDALKALFGIALYP-LNR----YQV-IALGGVQPLFSLVV 187 (315)
Q Consensus 116 L~~Ls~~~~~~~~i~~~~g~--i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~-~~~----~~i-~~~g~v~~L~~lL~ 187 (315)
+|-|+..++....+... ++ ++.|+.+++. ....++.+.++.+|.|+.... +.. ..+ +..++ +.+++.|.
T Consensus 252 iWlLSF~~~~~~~l~~~-~i~~~~~L~~i~k~-s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~ 328 (480)
T 1ho8_A 252 IWLLTFNPVFANELVQK-YLSDFLDLLKLVKI-TIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLS 328 (480)
T ss_dssp HHHHTTSHHHHHHHHTT-SHHHHHHHHHHHHH-CCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHH
T ss_pred HHHHHcCHHHHHHHHhc-chHHHHHHHHHHHh-hccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHh
Confidence 99999988876666653 42 3677777875 356789999999999998743 222 222 23344 56777775
Q ss_pred cC--CCcchHHHHHH---H----HHHHhcCh------------------------hhHHHHHhcCC--HHHHHHHhhcCC
Q 021242 188 NG--GRAGIVEDASA---V----IAQIAGCE------------------------ESVDEFKKCCG--IGVLVDLLDLGT 232 (315)
Q Consensus 188 ~~--~~~~~~~~a~~---~----L~~L~~~~------------------------~~~~~i~~~~~--i~~Lv~ll~~~~ 232 (315)
.. .++.+.+..-. . ...+++.+ +|...|.+..+ +..|+++|....
T Consensus 329 ~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~ 408 (480)
T 1ho8_A 329 ERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKV 408 (480)
T ss_dssp SSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhc
Confidence 43 34555443211 1 12222111 22223322232 688899997310
Q ss_pred -------CCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 021242 233 -------GSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILV 295 (315)
Q Consensus 233 -------~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~ 295 (315)
+.++.+..-||.=+..+++..+ +.+ .+++ ..|+-..+..++.+++++||..|-..++.+-
T Consensus 409 ~~~~~~~s~d~~~laVAc~Digefvr~~P-~gr-~i~~-~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 409 RNGDVNAKQEKIIIQVALNDITHVVELLP-ESI-DVLD-KTGGKADIMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp HTTCCCSHHHHHHHHHHHHHHHHHHHHCT-THH-HHHH-HHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred cccccccCCCcceEEeecccHHHHHHHCc-chh-HHHH-HcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 0134555556666788887665 343 4444 3789888889999999999999998887653
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00062 Score=68.73 Aligned_cols=260 Identities=11% Similarity=0.121 Sum_probs=165.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhccCch---hhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhh
Q 021242 8 VRSLVTKLGSVSEQTRAEALAELRLLSKHDAE---IRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLM 84 (315)
Q Consensus 8 i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i 84 (315)
+..+...+...... +.|+..+..++..... .-..++ +.+|.++..+.+....++.+|..++..+...-+...+
T Consensus 56 ~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~ 131 (986)
T 2iw3_A 56 FGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI 131 (986)
T ss_dssp HHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH
T ss_pred HHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH
Confidence 44455555444222 7777888888754321 112222 5788889988888888888888777666543322222
Q ss_pred hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhh-hccccHHHHHHHhhccCCChHHHHHHHHHHHHh
Q 021242 85 STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIG-AKRDIIHSLIEIIKTRNSPLRSVKDALKALFGI 163 (315)
Q Consensus 85 ~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~-~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~L 163 (315)
...+|.|+..|++ .+.=+.+..|..++..|+... ...+. .-..+||.+-..+. +..+++...|..++..+
T Consensus 132 --~~~~~~~~~~~~~---~~kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~--d~k~~v~~~~~~~~~~~ 202 (986)
T 2iw3_A 132 --KALLPHLTNAIVE---TNKWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLSETMW--DTKKEVKAAATAAMTKA 202 (986)
T ss_dssp --HHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhcc---ccchHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchHhhcc--cCcHHHHHHHHHHHHHH
Confidence 3468999999976 245688889999999998644 23333 22345666666666 45789999999999999
Q ss_pred ccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcC----CHHHHHHHhhcCCCCChhHH
Q 021242 164 ALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCC----GIGVLVDLLDLGTGSGHRVK 239 (315)
Q Consensus 164 s~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~----~i~~Lv~ll~~~~~~~~~~~ 239 (315)
|.--+|+.. ...+|.|++.+. +|+. .-.+++.|+....... ++.. .+|.|.+-|... +..++
T Consensus 203 ~~~~~n~d~---~~~~~~~~~~~~-~p~~-----~~~~~~~l~~~tfv~~--v~~~~l~~~~p~l~r~l~~~---~~~~~ 268 (986)
T 2iw3_A 203 TETVDNKDI---ERFIPSLIQCIA-DPTE-----VPETVHLLGATTFVAE--VTPATLSIMVPLLSRGLNER---ETGIK 268 (986)
T ss_dssp GGGCCCTTT---GGGHHHHHHHHH-CTTH-----HHHHHHHHTTCCCCSC--CCHHHHHHHHHHHHHHHTSS---SHHHH
T ss_pred HhcCCCcch---hhhHHHHHHHhc-Chhh-----hHHHHHHhhcCeeEee--ecchhHHHHHHHHHhhhccC---cchhh
Confidence 986555543 366899999996 4522 2334555654321100 0111 146666667654 78888
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhh-CCHHHHHHHHHHHHHHhh
Q 021242 240 ENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQN-GSAKGKTKAVALLKILVD 296 (315)
Q Consensus 240 ~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~-~~~~~k~~A~~~L~~l~~ 296 (315)
.+++.++.|+|+--.+. .++..+=--.+|.|-...+. .+|++|+.|.+.+.-|.+
T Consensus 269 r~~~~~~~n~~~lv~~~--~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~ 324 (986)
T 2iw3_A 269 RKSAVIIDNMCKLVEDP--QVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRR 324 (986)
T ss_dssp HHHHHHHHHHHTTCCCH--HHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHH
T ss_pred eeeEEEEcchhhhcCCH--HHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 99999999999854332 12211003455555565555 699999999998888854
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=97.91 E-value=1.2e-05 Score=61.55 Aligned_cols=88 Identities=15% Similarity=0.149 Sum_probs=74.6
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhh
Q 021242 7 TVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMST 86 (315)
Q Consensus 7 ~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~ 86 (315)
.++.|+..|+++++.+|..|+++|..+... .+++.|+.+|++.++.++..|+++|.++. .
T Consensus 43 ~~~~L~~~L~d~~~~vR~~A~~aL~~~~~~-----------~a~~~L~~~L~d~~~~VR~~A~~aL~~~~---------~ 102 (131)
T 1te4_A 43 AFEPLLESLSNEDWRIRGAAAWIIGNFQDE-----------RAVEPLIKLLEDDSGFVRSGAARSLEQIG---------G 102 (131)
T ss_dssp THHHHHHGGGCSCHHHHHHHHHHHGGGCSH-----------HHHHHHHHHHHHCCTHHHHHHHHHHHHHC---------S
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCH-----------HHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------c
Confidence 479999999999999999999999988631 24899999999999999999999998875 3
Q ss_pred cCchHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 021242 87 RGLLDAISHVLRHHSTSTSSAAVQSSAATLHS 118 (315)
Q Consensus 87 ~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~ 118 (315)
...++.|+.++++ +++.++..++.+|..
T Consensus 103 ~~a~~~L~~~l~d----~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 103 ERVRAAMEKLAET----GTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHHTTS----CCTHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhC----CCHHHHHHHHHHHHh
Confidence 4568899999986 677889888887754
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0034 Score=62.92 Aligned_cols=226 Identities=14% Similarity=0.059 Sum_probs=144.6
Q ss_pred HHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHHhc
Q 021242 20 EQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRH 99 (315)
Q Consensus 20 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~~ 99 (315)
+.+|..|+..|....-.+. +..+++.|.+++.+.+..+++.|+.+|..+-.+..+. .++..|++.+.+
T Consensus 451 ~~ir~gAaLGLGla~~GS~-------~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~-----~ai~~LL~~~~e 518 (963)
T 4ady_A 451 DVLLHGASLGIGLAAMGSA-------NIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP-----EAIHDMFTYSQE 518 (963)
T ss_dssp HHHHHHHHHHHHHHSTTCC-------CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH-----HHHHHHHHHHhc
Confidence 4566666666665432211 1124777888888777666777888886653333221 235667776654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHhhCCc
Q 021242 100 HSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGV 179 (315)
Q Consensus 100 ~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v 179 (315)
..+..++..++..|..+.. +.... ++.++..|.. ..++-++..++-++.--.....+... |
T Consensus 519 ---~~~e~vrR~aalgLGll~~--------g~~e~-~~~li~~L~~-~~dp~vRygaa~alglAyaGTGn~~a------I 579 (963)
T 4ady_A 519 ---TQHGNITRGLAVGLALINY--------GRQEL-ADDLITKMLA-SDESLLRYGGAFTIALAYAGTGNNSA------V 579 (963)
T ss_dssp ---CSCHHHHHHHHHHHHHHTT--------TCGGG-GHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTSCCHHH------H
T ss_pred ---cCcHHHHHHHHHHHHhhhC--------CChHH-HHHHHHHHHh-CCCHHHHHHHHHHHHHHhcCCCCHHH------H
Confidence 2567777777777776543 22224 7888888875 35667766677776544444444433 4
Q ss_pred HHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHH
Q 021242 180 QPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAE 259 (315)
Q Consensus 180 ~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 259 (315)
..|+..+.++++..++..|...|..++..++ ..++.++.++... .++.+|..+..+|..++...+ . .
T Consensus 580 q~LL~~~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~--~d~~VR~gAalALGli~aGn~-~--~ 646 (963)
T 4ady_A 580 KRLLHVAVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKS--HNAHVRCGTAFALGIACAGKG-L--Q 646 (963)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGC--SCHHHHHHHHHHHHHHTSSSC-C--H
T ss_pred HHHHHHhccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhc--CCHHHHHHHHHHHHHhccCCC-c--H
Confidence 4566666555666778888888887654331 3477788766543 378999999999999975432 2 1
Q ss_pred HHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhh
Q 021242 260 EVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 260 ~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
. ++..|..+.++.++.|++.|...|-.+-.
T Consensus 647 ~-------aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 647 S-------AIDVLDPLTKDPVDFVRQAAMIALSMILI 676 (963)
T ss_dssp H-------HHHHHHHHHTCSSHHHHHHHHHHHHHHST
T ss_pred H-------HHHHHHHHccCCCHHHHHHHHHHHHHHhc
Confidence 2 34466677888899999999998887754
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00017 Score=61.69 Aligned_cols=150 Identities=9% Similarity=0.065 Sum_probs=107.8
Q ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHHhccCc--hhh-HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhh
Q 021242 8 VRSLVTKL-GSVSEQTRAEALAELRLLSKHDA--EIR-PMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSL 83 (315)
Q Consensus 8 i~~Lv~~L-~~~~~~~~~~a~~~L~~l~~~~~--~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~ 83 (315)
+..|...+ +.+++.++..|+.+|..++..-. .-. ... .-.+|.+++.+++..+.+++.+..+|..++..-+...
T Consensus 62 ~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~--~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~ 139 (249)
T 2qk1_A 62 LGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYV--SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLA 139 (249)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHH--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccc
Confidence 55666777 68889999999999999985321 111 121 2268999999998888999998888877765432211
Q ss_pred hh--hcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCc--hhhhhhc-cccHHHHHHHhhccCCChHHHHHHHH
Q 021242 84 MS--TRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSY--RPIIGAK-RDIIHSLIEIIKTRNSPLRSVKDALK 158 (315)
Q Consensus 84 i~--~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~--~~~i~~~-~g~i~~Lv~ll~~~~~~~~~~~~a~~ 158 (315)
.. -...++.|+..|++ .++.+++.++.+|..+...... ......- ..++|.|..++. +.++.++..|..
T Consensus 140 ~~~~l~~ll~~l~~~l~~----k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~--D~~~~VR~aA~~ 213 (249)
T 2qk1_A 140 SSGRNEDMLKDILEHMKH----KTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVN--DTQPAIRTIGFE 213 (249)
T ss_dssp TTCTTHHHHHHHHHHTTC----SSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHT--CSSHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHcC----CChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHH
Confidence 11 12367888888887 6789999999999998854332 2222223 467999999998 568899999999
Q ss_pred HHHHhcc
Q 021242 159 ALFGIAL 165 (315)
Q Consensus 159 aL~~Ls~ 165 (315)
+|..++.
T Consensus 214 ~l~~i~~ 220 (249)
T 2qk1_A 214 SFAILIK 220 (249)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988774
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00051 Score=57.25 Aligned_cols=148 Identities=15% Similarity=0.123 Sum_probs=115.7
Q ss_pred hhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhh
Q 021242 4 KRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSL 83 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~ 83 (315)
-+..++.++..+++.+..+-.+|+++|..+..+-|-....+.. ++..|.++++++++-.+++|+..|..+.--..
T Consensus 73 ~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~--- 147 (265)
T 3b2a_A 73 LERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLED--- 147 (265)
T ss_dssp HHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC---
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccc---
Confidence 4567899999999999999999999999998776655555544 35788899999999999999999999832221
Q ss_pred hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHh
Q 021242 84 MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGI 163 (315)
Q Consensus 84 i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~L 163 (315)
....+..+.+++.+ .+++++..+..++.+++...+.+..+. .++.-+-.++. +.|+.++.-|+.+|-.+
T Consensus 148 --~~~V~~~l~sLl~S----kd~~vK~agl~~L~eia~~S~D~~i~~---~I~~eI~elL~--~eD~~l~e~aLd~Le~i 216 (265)
T 3b2a_A 148 --SKLVRTYINELVVS----PDLYTKVAGFCLFLNMLNSSADSGHLT---LILDEIPSLLQ--NDNEFIVELALDVLEKA 216 (265)
T ss_dssp --CHHHHHHHHHHHTC----SSHHHHHHHHHHHHHHGGGCSSCCCGG---GTTTTHHHHHT--CSCHHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHhC----CChhHHHHHHHHHHHhhcccCCHHHHH---HHHHHHHHHHc--CCCHHHHHHHHHHHHHH
Confidence 22346778888876 789999999999999997555444442 33555667788 56999999999999999
Q ss_pred ccCC
Q 021242 164 ALYP 167 (315)
Q Consensus 164 s~~~ 167 (315)
.+.|
T Consensus 217 ls~p 220 (265)
T 3b2a_A 217 LSFP 220 (265)
T ss_dssp TTSC
T ss_pred HcCc
Confidence 8864
|
| >3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0025 Score=56.10 Aligned_cols=190 Identities=16% Similarity=0.143 Sum_probs=129.6
Q ss_pred hHHHHHHHhcCCCCCCHHHHHHHHHHHHH-hhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCC
Q 021242 90 LDAISHVLRHHSTSTSSAAVQSSAATLHS-LLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPL 168 (315)
Q Consensus 90 i~~L~~lL~~~~~~~~~~~~~~a~~~L~~-Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~ 168 (315)
+..++.-|.+ ++.+.+..+..-|.. ++...+-...|...+| +..|+.++. .++...+.+++++|.+|..+.+
T Consensus 120 a~~iiekL~~----~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~G-L~~Li~vi~--~~~gN~q~Y~L~AL~~LM~~v~ 192 (339)
T 3dad_A 120 VNAILEKLYS----SSGPELRRSLFSLKQIFQEDKDLVPEFVHSEG-LSCLIRVGA--AADHNYQSYILRALGQLMLFVD 192 (339)
T ss_dssp HHHHHHHHHH----CCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTH-HHHHHHHHT--TSCHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHhc----CCcHHHHHHHHHHHHHhhcchHHHHHHHHhcc-HHHHHHHHH--hcChHHHHHHHHHHHHHHhccc
Confidence 4456666765 445556667666666 4455666777777778 899999998 6688999999999999998776
Q ss_pred cHHHHHh-hCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHhc-------CC---HHHHHHHhhcCCCCCh
Q 021242 169 NRYQVIA-LGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKKC-------CG---IGVLVDLLDLGTGSGH 236 (315)
Q Consensus 169 ~~~~i~~-~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~-------~~---i~~Lv~ll~~~~~~~~ 236 (315)
.-.-+++ ...|.-+..++. ..+..+...|+++|-+++. .+.+...+.++ .| ...|+.+|+..+..+.
T Consensus 193 Gm~gvvs~~~fI~~lyslv~-s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~ 271 (339)
T 3dad_A 193 GMLGVVAHSDTIQWLYTLCA-SLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADP 271 (339)
T ss_dssp HHHHHHHCHHHHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCH
T ss_pred cccchhCCHHHHHHHHHHHc-CccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCH
Confidence 6666664 356667777775 4567788999999999876 34454443322 12 7899999973323488
Q ss_pred hHHHHHHHHHHHHhccCCH-HHHHHHHH--HccCcHHHHHHHHhhC--CHHHHHHH
Q 021242 237 RVKENAVSALLNLVNFGGE-RAAEEVKE--MAMQVADGIADVAQNG--SAKGKTKA 287 (315)
Q Consensus 237 ~~~~~a~~~L~~l~~~~~~-~~~~~i~~--~~~g~~~~L~~ll~~~--~~~~k~~A 287 (315)
.++.+|...+..+....++ +....++. ...|.-..+...+++. ++..++.-
T Consensus 272 elq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Ql 327 (339)
T 3dad_A 272 ELLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQL 327 (339)
T ss_dssp HHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHHH
Confidence 9999999888877765443 22334432 0145556666767663 66776643
|
| >3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00097 Score=58.72 Aligned_cols=152 Identities=12% Similarity=0.048 Sum_probs=118.1
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHH-hccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHH
Q 021242 136 IHSLIEIIKTRNSPLRSVKDALKALFG-IALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDE 214 (315)
Q Consensus 136 i~~Lv~ll~~~~~~~~~~~~a~~aL~~-Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~ 214 (315)
...++.-|. +.+......++-.|.. ++.+.+-...++..+++..|+.+.. +.+.+.+..++.+|.+|.....|...
T Consensus 120 a~~iiekL~--~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~-~~~gN~q~Y~L~AL~~LM~~v~Gm~g 196 (339)
T 3dad_A 120 VNAILEKLY--SSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGA-AADHNYQSYILRALGQLMLFVDGMLG 196 (339)
T ss_dssp HHHHHHHHH--HCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHT-TSCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHh--cCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHH-hcChHHHHHHHHHHHHHHhccccccc
Confidence 345666666 3466778889999998 6668888999999999999999996 45778889999999999999999988
Q ss_pred HHhcC-CHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHH------HccC--cHHHHHHHHh---hCCHH
Q 021242 215 FKKCC-GIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKE------MAMQ--VADGIADVAQ---NGSAK 282 (315)
Q Consensus 215 i~~~~-~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~------~~~g--~~~~L~~ll~---~~~~~ 282 (315)
++++. .|.++..++.+. ...+.+.|+.+|..++..+. .....+.+ .+.| -++.|+.+++ +++..
T Consensus 197 vvs~~~fI~~lyslv~s~---~~~V~k~AL~LL~v~V~~se-~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~e 272 (339)
T 3dad_A 197 VVAHSDTIQWLYTLCASL---SRLVVKTALKLLLVFVEYSE-NNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPE 272 (339)
T ss_dssp HHHCHHHHHHHHHGGGCS---CHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHH
T ss_pred hhCCHHHHHHHHHHHcCc---cHHHHHHHHHHHHHHHccCc-ccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHH
Confidence 88654 699999999864 78888899999999986542 22222222 0011 2678999998 67999
Q ss_pred HHHHHHHHHHHH
Q 021242 283 GKTKAVALLKIL 294 (315)
Q Consensus 283 ~k~~A~~~L~~l 294 (315)
++.+|-.+++.+
T Consensus 273 lq~~amtLIN~l 284 (339)
T 3dad_A 273 LLVYTVTLINKT 284 (339)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987766
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.01 Score=47.61 Aligned_cols=215 Identities=11% Similarity=0.160 Sum_probs=140.9
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHc-CCCHHHHHHHHHHHHhcCcccchhh
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILY-SSSHAFQENAAATLLNLSITSRDSL 83 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~la~~~~~~~ 83 (315)
+.-+..++..|...-+-+|.+|+..|..+++.-++....+ +..|+-|++ +....+-...+++++.++.-
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i----- 100 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKE----- 100 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHh-----
Confidence 3456788899999889999999999999998766644433 445666654 44455545566777766632
Q ss_pred hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHh
Q 021242 84 MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGI 163 (315)
Q Consensus 84 i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~L 163 (315)
++..+..++.++.-+.--+++.++.+...+|-.++...+ ..+ ++++.-+..++.++ +..-+..|+..+..|
T Consensus 101 --~Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP--~l~---~~v~rdi~smltsk--d~~Dkl~aLnFi~al 171 (253)
T 2db0_A 101 --KPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANP--MLM---ASIVRDFMSMLSSK--NREDKLTALNFIEAM 171 (253)
T ss_dssp --CHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCH--HHH---HHHHHHHHHHTSCS--SHHHHHHHHHHHHTC
T ss_pred --CHHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhCh--HHH---HHHHHHHHHHhcCC--ChHHHHHHHHHHHHH
Confidence 344444455554322212789999999999999886322 222 35577788888843 544455566666554
Q ss_pred ccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHH
Q 021242 164 ALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENA 242 (315)
Q Consensus 164 s~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a 242 (315)
. +|..+-+ .-.+|.|+.+|. +.+.-++..|..+|.+++. ++.-|+.+.+ -+.-+.+ .+..++...
T Consensus 172 G---en~~~yv-~PfLprL~aLL~-D~deiVRaSaVEtL~~lA~~npklRkii~~------kl~e~~D---~S~lv~~~V 237 (253)
T 2db0_A 172 G---ENSFKYV-NPFLPRIINLLH-DGDEIVRASAVEALVHLATLNDKLRKVVIK------RLEELND---TSSLVNKTV 237 (253)
T ss_dssp C---TTTHHHH-GGGHHHHHGGGG-CSSHHHHHHHHHHHHHHHTSCHHHHHHHHH------HHHHCCC---SCHHHHHHH
T ss_pred h---ccCcccc-CcchHHHHHHHc-CcchhhhHHHHHHHHHHHHcCHHHHHHHHH------HHHHhcC---cHHHHHHHH
Confidence 3 3433322 467888999996 5677788899999999988 5665655532 2333443 377788777
Q ss_pred HHHHHHHhcc
Q 021242 243 VSALLNLVNF 252 (315)
Q Consensus 243 ~~~L~~l~~~ 252 (315)
...|..+..-
T Consensus 238 ~egL~rl~l~ 247 (253)
T 2db0_A 238 KEGISRLLLL 247 (253)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 7777777653
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00053 Score=61.54 Aligned_cols=240 Identities=11% Similarity=0.059 Sum_probs=81.4
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhc
Q 021242 8 VRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTR 87 (315)
Q Consensus 8 i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~ 87 (315)
+..+...+++++|-+|-.|+++|+.+... +.-+ ...+.+.+.|.+.++-++..|+.+..++....+ .++ .
T Consensus 106 ~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~m~~-----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p-e~v--~ 175 (355)
T 3tjz_B 106 TSSLTKDMTGKEDSYRGPAVRALCQITDS--TMLQ-----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSF-DVV--K 175 (355)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHCCT--TTHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH-HHH--H
T ss_pred HHHHHhhcCCCcHhHHHHHHHHHhcCCCH--HHHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCH-HHH--H
Confidence 44455555555555555555555555422 1111 123334444445555555555555554442221 111 1
Q ss_pred CchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhcc-CCChHHHHHHHHHHHHhccC
Q 021242 88 GLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTR-NSPLRSVKDALKALFGIALY 166 (315)
Q Consensus 88 ~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~-~~~~~~~~~a~~aL~~Ls~~ 166 (315)
+.++.+-+++.+ .++-+..+|..+|..+...+ ...+..|+.-+... ..++-.+..-++.+..++..
T Consensus 176 ~~~~~l~~ll~d----~n~~V~~~Al~lL~ei~~~d---------~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~ 242 (355)
T 3tjz_B 176 RWVNEAQEAASS----DNIMVQYHALGLLYHVRKND---------RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLED 242 (355)
T ss_dssp TTHHHHHHHTTC----SSHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC---
T ss_pred HHHHHHHHHhcC----CCccHHHHHHHHHHHHHhhc---------hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccc
Confidence 344455555543 34444444555555544321 00133334333310 00222222233333333221
Q ss_pred CCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHH
Q 021242 167 PLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSAL 246 (315)
Q Consensus 167 ~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L 246 (315)
++.. .....++.+..+|+ +.+..+.-.|+.++..+...+. . .. ..++..+..++.+. ++.+|-.|+..|
T Consensus 243 d~~~---~~~~~~~~l~~~L~-~~~~aVvyEa~k~I~~l~~~~~--~-~~-~~a~~~L~~fLss~---d~niryvaLr~L 311 (355)
T 3tjz_B 243 EDGS---RDSPLFDFIESCLR-NKHEMVVYEAASAIVNLPGCSA--K-EL-APAVSVLQLFCSSP---KAALRYAAVRTL 311 (355)
T ss_dssp -----------------CCCC-CSSHHHHHHHHHHHTC---------------CCCTHHHHHHSS---SSSSHHHHHHCC
T ss_pred cchh---hHHHHHHHHHHHHc-CCChHHHHHHHHHHHhccCCCH--H-HH-HHHHHHHHHHHcCC---CchHHHHHHHHH
Confidence 1000 01122233333332 3445566667777766644221 1 11 23345555666654 677888888777
Q ss_pred HHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHH
Q 021242 247 LNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVA 289 (315)
Q Consensus 247 ~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~ 289 (315)
..+....+ .+++ ..-..+..++.+++..+...|..
T Consensus 312 ~~l~~~~P-----~~v~---~~n~~ie~li~d~n~sI~t~Ait 346 (355)
T 3tjz_B 312 NKVAMKHP-----SAVT---ACNLDLENLVTDANRSIATLAIT 346 (355)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHCc-----HHHH---HHHHHHHHHccCCcHhHHHHHHH
Confidence 77765332 2222 23444556666666666555544
|
| >1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 | Back alignment and structure |
|---|
Probab=97.53 E-value=0.015 Score=53.63 Aligned_cols=221 Identities=14% Similarity=0.149 Sum_probs=136.6
Q ss_pred hhHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCc---hhhHHHHhCCCH-HHHHHHHcCCC-HHHHHHHHHHHHhcCccc
Q 021242 6 RTVRSLVTKLG-SVSEQTRAEALAELRLLSKHDA---EIRPMISEAGSI-PYLAEILYSSS-HAFQENAAATLLNLSITS 79 (315)
Q Consensus 6 ~~i~~Lv~~L~-~~~~~~~~~a~~~L~~l~~~~~---~~~~~i~~~g~i-~~Lv~lL~~~~-~~~~~~a~~~L~~la~~~ 79 (315)
.++..++.+|+ .+..++....+..+..+...++ ..-..+.+.... ..+.......+ .-.+..+..++..++...
T Consensus 77 ~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~ 156 (480)
T 1ho8_A 77 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG 156 (480)
T ss_dssp TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred hHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccC
Confidence 45677888887 4567888899998999887765 323344444332 22333222334 345566666554444222
Q ss_pred ch--hhhhhcCchH--HHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhc-cccHHHHHHHhhcc--------
Q 021242 80 RD--SLMSTRGLLD--AISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAK-RDIIHSLIEIIKTR-------- 146 (315)
Q Consensus 80 ~~--~~i~~~~~i~--~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~-~g~i~~Lv~ll~~~-------- 146 (315)
.+ +.. +..+. -++..|.+. ++.+.+..++.+|..|...++.|..+... ++++|.++.++...
T Consensus 157 ~~~~~~l--~~l~~~~~~~~~L~~~---~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~ 231 (480)
T 1ho8_A 157 LHNVKLV--EKLLKNNNLINILQNI---EQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATR 231 (480)
T ss_dssp TCCHHHH--HHHHHCHHHHHHHHCT---TCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC------
T ss_pred CccHhHH--HHHhhhHHHHHHhccc---cCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccc
Confidence 11 110 11122 344555541 23455667889999999999999988653 34678887765521
Q ss_pred -----CC--ChHHHHHHHHHHHHhccCCCcHHHHHhhCCc--HHHHHHHhcCCCcchHHHHHHHHHHHhcCh-----hhH
Q 021242 147 -----NS--PLRSVKDALKALFGIALYPLNRYQVIALGGV--QPLFSLVVNGGRAGIVEDASAVIAQIAGCE-----ESV 212 (315)
Q Consensus 147 -----~~--~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v--~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~-----~~~ 212 (315)
.+ ..+.+-+++-++|-|+.+++....+...+.. +.|++.++....+.+..-++++|.||.... ...
T Consensus 232 ~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~ 311 (480)
T 1ho8_A 232 IVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVI 311 (480)
T ss_dssp -------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHH
T ss_pred cccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHH
Confidence 01 2456778999999999998887788766644 677777875555678888999999997643 112
Q ss_pred HHHHhcCCHHHHHHHhhcC
Q 021242 213 DEFKKCCGIGVLVDLLDLG 231 (315)
Q Consensus 213 ~~i~~~~~i~~Lv~ll~~~ 231 (315)
..++-.+..+.++..|...
T Consensus 312 ~~~~~~~~~l~~l~~L~~r 330 (480)
T 1ho8_A 312 KQLLLLGNALPTVQSLSER 330 (480)
T ss_dssp HHHHHHHCHHHHHHHHHSS
T ss_pred HHHHHHccchHHHHHHhhC
Confidence 2222223346677777654
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.004 Score=55.78 Aligned_cols=245 Identities=13% Similarity=0.087 Sum_probs=145.7
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhcC
Q 021242 9 RSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTRG 88 (315)
Q Consensus 9 ~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~ 88 (315)
...+..+.+.+.+.++-..-.+..+++..++ .+ =++..|.+=++++++-++-.|+++|.++...+- -..
T Consensus 71 ~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e---~i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m-----~~~ 139 (355)
T 3tjz_B 71 FAMTKLFQSNDPTLRRMCYLTIKEMSCIAED---VI---IVTSSLTKDMTGKEDSYRGPAVRALCQITDSTM-----LQA 139 (355)
T ss_dssp HHHHGGGGCCCHHHHHHHHHHHHHHTTTSSC---GG---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTT-----HHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhCCCHHH---HH---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHH-----HHH
Confidence 3446677888888888888888888866322 11 236667777788999999999999999864331 112
Q ss_pred chHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCC
Q 021242 89 LLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPL 168 (315)
Q Consensus 89 ~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~ 168 (315)
..+.+.+.|.+ .++-++..|+-+..+|... +...+ + ++++.+-+++. +.++-++.+|+.+|+.++..+
T Consensus 140 l~~~lk~~L~d----~~pyVRk~A~l~~~kL~~~--~pe~v-~--~~~~~l~~ll~--d~n~~V~~~Al~lL~ei~~~d- 207 (355)
T 3tjz_B 140 IERYMKQAIVD----KVPSVSSSALVSSLHLLKC--SFDVV-K--RWVNEAQEAAS--SDNIMVQYHALGLLYHVRKND- 207 (355)
T ss_dssp HHHHHHHHHTC----SSHHHHHHHHHHHHHHTTT--CHHHH-H--TTHHHHHHHTT--CSSHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHcCC----CCHHHHHHHHHHHHHHhcc--CHHHH-H--HHHHHHHHHhc--CCCccHHHHHHHHHHHHHhhc-
Confidence 34556666666 6889999999888887643 33343 2 57899999998 558889999999999998754
Q ss_pred cHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcC-hhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHH
Q 021242 169 NRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGC-EESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALL 247 (315)
Q Consensus 169 ~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~ 247 (315)
+. ++..++..+...+ ..-...-+.+|+.++.. +..-.. .....++.+...|++. ++.+...|+.++.
T Consensus 208 -~~------a~~kLv~~l~~~~-l~~~~~q~~llr~l~~~~~~d~~~-~~~~~~~~l~~~L~~~---~~aVvyEa~k~I~ 275 (355)
T 3tjz_B 208 -RL------AVSKMISKFTRHG-LKSPFAYCMMIRVASRQLEDEDGS-RDSPLFDFIESCLRNK---HEMVVYEAASAIV 275 (355)
T ss_dssp -HH------HHHHHHHHHHSSC-CSCHHHHHHHHHHHTCC------------------CCCCCS---SHHHHHHHHHHHT
T ss_pred -hH------HHHHHHHHHhcCC-CcChHHHHHHHHHHHHhccccchh-hHHHHHHHHHHHHcCC---ChHHHHHHHHHHH
Confidence 11 3344555554211 11122234455555442 111000 1122355666677764 7888888888888
Q ss_pred HHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhh
Q 021242 248 NLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 248 ~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
.+.. .. . ... ..++..|..++.+.++.+|=-|...|+.+..
T Consensus 276 ~l~~-~~-~--~~~----~~a~~~L~~fLss~d~niryvaLr~L~~l~~ 316 (355)
T 3tjz_B 276 NLPG-CS-A--KEL----APAVSVLQLFCSSPKAALRYAAVRTLNKVAM 316 (355)
T ss_dssp C-------------------CCCTHHHHHHSSSSSSHHHHHHCC-----
T ss_pred hccC-CC-H--HHH----HHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 8743 11 1 122 2345667777888888888888776666654
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=97.37 E-value=0.051 Score=54.52 Aligned_cols=249 Identities=16% Similarity=0.082 Sum_probs=152.8
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHc-CCCHHHHHHHHHHHHhcCcccchhhh
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILY-SSSHAFQENAAATLLNLSITSRDSLM 84 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~la~~~~~~~i 84 (315)
..++.|...|...+...+..|+.+|..+--.+ .+. .++..|+..+. ..+.++++.++..|..+. +
T Consensus 472 ev~e~L~~~L~dd~~~~~~~AalALGli~vGT-gn~------~ai~~LL~~~~e~~~e~vrR~aalgLGll~-------~ 537 (963)
T 4ady_A 472 EVYEALKEVLYNDSATSGEAAALGMGLCMLGT-GKP------EAIHDMFTYSQETQHGNITRGLAVGLALIN-------Y 537 (963)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC-CCH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHT-------T
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhccc-CCH------HHHHHHHHHHhccCcHHHHHHHHHHHHhhh-------C
Confidence 44667777777666666666666666542111 111 12455555543 456678888888887665 3
Q ss_pred hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhc
Q 021242 85 STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIA 164 (315)
Q Consensus 85 ~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls 164 (315)
.+...++.++..|.. ..++-++..++.++. ++....+. ...|..|++.+.+ +.+..++..|.-+|..+.
T Consensus 538 g~~e~~~~li~~L~~---~~dp~vRygaa~alg-lAyaGTGn------~~aIq~LL~~~~~-d~~d~VRraAViaLGlI~ 606 (963)
T 4ady_A 538 GRQELADDLITKMLA---SDESLLRYGGAFTIA-LAYAGTGN------NSAVKRLLHVAVS-DSNDDVRRAAVIALGFVL 606 (963)
T ss_dssp TCGGGGHHHHHHHHH---CSCHHHHHHHHHHHH-HHTTTSCC------HHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHh---CCCHHHHHHHHHHHH-HHhcCCCC------HHHHHHHHHHhcc-CCcHHHHHHHHHHHHhhc
Confidence 455678888888874 256666665555544 34322111 1236777777664 356788999999999877
Q ss_pred cCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHH
Q 021242 165 LYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVS 244 (315)
Q Consensus 165 ~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~ 244 (315)
...+ ..++.++.+|.++.++.++..+..+|..++......+ + +..|..+..+. +..++.+|+.
T Consensus 607 ~g~~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~-a-----id~L~~L~~D~---d~~Vrq~Ai~ 669 (963)
T 4ady_A 607 LRDY--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQS-A-----IDVLDPLTKDP---VDFVRQAAMI 669 (963)
T ss_dssp SSSC--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHH-H-----HHHHHHHHTCS---SHHHHHHHHH
T ss_pred cCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHH-H-----HHHHHHHccCC---CHHHHHHHHH
Confidence 6432 3466677766555677788888888888865332222 2 34555566543 8899999999
Q ss_pred HHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhh--CCHHHHHHHHHHHHHH-hhCCCC
Q 021242 245 ALLNLVNFGGERAAEEVKEMAMQVADGIADVAQN--GSAKGKTKAVALLKIL-VDDGNM 300 (315)
Q Consensus 245 ~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~--~~~~~k~~A~~~L~~l-~~~~~~ 300 (315)
+|..+....++.....+ .+..+.|.....+ .++.++-.|.-.+=.+ .+.|++
T Consensus 670 ALG~Ig~gtnna~~~rv----a~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~n~ 724 (963)
T 4ady_A 670 ALSMILIQQTEKLNPQV----ADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRNV 724 (963)
T ss_dssp HHHHHSTTCCTTTCTTH----HHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGTE
T ss_pred HHHHHhcCCccccchHH----HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCCce
Confidence 99998764332211233 2355667777764 4777877776655444 333443
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.01 Score=55.69 Aligned_cols=244 Identities=11% Similarity=0.025 Sum_probs=153.2
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhC--CCHHHHHHHHc---------C-CCHHHHHHHHHHHHhc
Q 021242 8 VRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEA--GSIPYLAEILY---------S-SSHAFQENAAATLLNL 75 (315)
Q Consensus 8 i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~--g~i~~Lv~lL~---------~-~~~~~~~~a~~~L~~l 75 (315)
.+.|+..|-++..++|-.|+..|+.+.+............ ...-.|+..|. + ...-+||.|+++|..+
T Consensus 176 cE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL 255 (800)
T 3oc3_A 176 FEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI 255 (800)
T ss_dssp THHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH
Confidence 4678889999999999999999999876643211111111 22333333331 1 1235999999999888
Q ss_pred CcccchhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHH
Q 021242 76 SITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKD 155 (315)
Q Consensus 76 a~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~ 155 (315)
.+-+.. -..+..|+..+.. ..=+++..+.-.|.++ .+.+..-.++++.++.-|. +.+++++..
T Consensus 256 -~hLp~e----~~IL~qLV~~l~~----~~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~--D~DDDVRAV 318 (800)
T 3oc3_A 256 -YPLIGP----NDIIEQLVGFLDS----GDWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLS--SPDEDIKLL 318 (800)
T ss_dssp -TTTSCS----CCHHHHHTTGGGC----SCHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTT--CSSHHHHHH
T ss_pred -HhCChh----HHHHHHHHhhcCC----CCeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcC--CcccHHHHH
Confidence 653322 2334444443343 4668888888888888 3333223467888888888 458899999
Q ss_pred HHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCc-chHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCC
Q 021242 156 ALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRA-GIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGS 234 (315)
Q Consensus 156 a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~-~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~ 234 (315)
|+.+|.-++ .++... ..+..+-+.|.+-.+. .-....+..|+.|+..+.. ......-+|.|...+.+.
T Consensus 319 AAetLiPIA-~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHt--- 387 (800)
T 3oc3_A 319 SAELLCHFP-ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSP--- 387 (800)
T ss_dssp HHHHHTTSC-CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCS---
T ss_pred HHHHhhhhc-chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCC---
Confidence 999999988 332222 2234455555432232 2355677888888775531 001113489999999975
Q ss_pred ChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHH
Q 021242 235 GHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLK 292 (315)
Q Consensus 235 ~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~ 292 (315)
-..+|..++.+|..+. ....-+.+- ..++-..++.+++.+..+.+
T Consensus 388 ITSVR~AVL~TL~tfL---~~~~LRLIF----------QNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 388 VPEVRTSILNMVKNLS---EESIDFLVA----------EVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp SHHHHHHHHHHTTTCC---CHHHHHHHH----------HHHHHCSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH---hhhHHHHHH----------HHHHhCCcHHHHHHHHHHHH
Confidence 7899999998888775 122212222 25566678888888877765
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.051 Score=54.95 Aligned_cols=270 Identities=14% Similarity=0.132 Sum_probs=165.2
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCC-CHHHHHHHHHHHHhcCcccchhh-hh
Q 021242 8 VRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSS-SHAFQENAAATLLNLSITSRDSL-MS 85 (315)
Q Consensus 8 i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~la~~~~~~~-i~ 85 (315)
+|.++..+......+|..|..++..+.+.-+.. .+ ..++|.|+..|.+. .=..+..|+.++..++...+..+ ..
T Consensus 97 ~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~--a~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~ 172 (986)
T 2iw3_A 97 VPAICTNAGNKDKEIQSVASETLISIVNAVNPV--AI--KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALR 172 (986)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGG--GH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHH--HH--HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 466667777777889988888888887553322 22 55689999999654 34678889999988886553222 22
Q ss_pred hcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhcc
Q 021242 86 TRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL 165 (315)
Q Consensus 86 ~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~ 165 (315)
-++.+|.+...+-+ ..++++..|..++..++..-+|++.- .+||.|++.+.+| +-+..+...|..-..
T Consensus 173 ~~~~~p~~~~~~~d----~k~~v~~~~~~~~~~~~~~~~n~d~~----~~~~~~~~~~~~p----~~~~~~~~~l~~~tf 240 (986)
T 2iw3_A 173 MPELIPVLSETMWD----TKKEVKAAATAAMTKATETVDNKDIE----RFIPSLIQCIADP----TEVPETVHLLGATTF 240 (986)
T ss_dssp HHHHHHHHHHHTTC----SSHHHHHHHHHHHHHHGGGCCCTTTG----GGHHHHHHHHHCT----THHHHHHHHHTTCCC
T ss_pred ccchhcchHhhccc----CcHHHHHHHHHHHHHHHhcCCCcchh----hhHHHHHHHhcCh----hhhHHHHHHhhcCee
Confidence 45578888888876 67899999999999999877777753 5699999999943 223445544443333
Q ss_pred CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcC---hhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHH
Q 021242 166 YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGC---EESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENA 242 (315)
Q Consensus 166 ~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~---~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a 242 (315)
-.+.-...+ +=.+|.|.+-|. .+...+..+++-++.|+|.- +.....|. -.-+|.+-+.... -.++++++.+
T Consensus 241 v~~v~~~~l-~~~~p~l~r~l~-~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~-~~l~p~~~~~~~~--~~~pe~r~~~ 315 (986)
T 2iw3_A 241 VAEVTPATL-SIMVPLLSRGLN-ERETGIKRKSAVIIDNMCKLVEDPQVIAPFL-GKLLPGLKSNFAT--IADPEAREVT 315 (986)
T ss_dssp CSCCCHHHH-HHHHHHHHHHHT-SSSHHHHHHHHHHHHHHHTTCCCHHHHHHHH-TTTHHHHHHHTTT--CCSHHHHHHH
T ss_pred EeeecchhH-HHHHHHHHhhhc-cCcchhheeeEEEEcchhhhcCCHHHHhhhh-hhhhhHHHHHhhc--cCCHHHHHHH
Confidence 233222211 123566666664 44566778899999999984 33333333 1234444444443 2578999888
Q ss_pred HHHHHHHhccCC---HHHHHHHHHHccC----cHHHHHHHHhhC-----CHHHHHHHHHHHHHHhhCCCC
Q 021242 243 VSALLNLVNFGG---ERAAEEVKEMAMQ----VADGIADVAQNG-----SAKGKTKAVALLKILVDDGNM 300 (315)
Q Consensus 243 ~~~L~~l~~~~~---~~~~~~i~~~~~g----~~~~L~~ll~~~-----~~~~k~~A~~~L~~l~~~~~~ 300 (315)
-.++..|-+-+. +....+... .+ +...+...+... ...+...++.+...+.+.++.
T Consensus 316 ~~a~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 383 (986)
T 2iw3_A 316 LRALKTLRRVGNVGEDDAIPELSH--AGDVSTTLQVVNELLKDETVAPRFKIVVEYIAAIGADLIDERII 383 (986)
T ss_dssp HHHHHHHHHHHTCBTTTBCCCCCC--TTCHHHHHHHHHHHTTTSCCCGGGHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhhccccccccccccc--cchHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhhcccc
Confidence 777777743211 000000000 11 122233333321 245667888888888776654
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.1 Score=41.95 Aligned_cols=213 Identities=18% Similarity=0.175 Sum_probs=142.4
Q ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCch
Q 021242 47 AGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYR 126 (315)
Q Consensus 47 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~ 126 (315)
..++..++.+|.+.-=.+|.+|+.++..++..-+. + ....+..|+-+++. +......+..+.++..++...+
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~e-l--~epl~~kL~vm~~k---sEaIpltqeIa~a~G~la~i~P-- 102 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRED-L--YEPMLKKLFSLLKK---SEAIPLTQEIAKAFGQMAKEKP-- 102 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGG-G--HHHHHHHHHHHHHH---CCSHHHHHHHHHHHHHHHHHCH--
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHH-H--HHHHHHHHHHHHhh---cccCchHHHHHHHHhHHHHhCH--
Confidence 45678888888766567999999999888644321 1 11246677777764 2677777788889988885322
Q ss_pred hhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhcc-CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHH
Q 021242 127 PIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL-YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQI 205 (315)
Q Consensus 127 ~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L 205 (315)
-+.. +++|.|+.-.+ -++++++.+..-+|..++. +|+.- .+++.-+..++. +++. ..=+.+|..+
T Consensus 103 -e~v~--~vVp~lfanyr--igd~kikIn~~yaLeeIaranP~l~-----~~v~rdi~smlt-skd~---~Dkl~aLnFi 168 (253)
T 2db0_A 103 -ELVK--SMIPVLFANYR--IGDEKTKINVSYALEEIAKANPMLM-----ASIVRDFMSMLS-SKNR---EDKLTALNFI 168 (253)
T ss_dssp -HHHH--HHHHHHHHHSC--CCSHHHHHHHHHHHHHHHHHCHHHH-----HHHHHHHHHHTS-CSSH---HHHHHHHHHH
T ss_pred -HHHH--hhHHHHHHHHh--cCCccceecHHHHHHHHHHhChHHH-----HHHHHHHHHHhc-CCCh---HHHHHHHHHH
Confidence 1222 45788888777 6799999999999999887 44322 244556777774 4552 3345566666
Q ss_pred hcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHH
Q 021242 206 AGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKT 285 (315)
Q Consensus 206 ~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~ 285 (315)
+.-.++.-.-+ ...+|.|..+|.++ +.-++..++.+|.+++.-+ +..+..+. .-+.=+.+.+..+++
T Consensus 169 ~alGen~~~yv-~PfLprL~aLL~D~---deiVRaSaVEtL~~lA~~n-pklRkii~--------~kl~e~~D~S~lv~~ 235 (253)
T 2db0_A 169 EAMGENSFKYV-NPFLPRIINLLHDG---DEIVRASAVEALVHLATLN-DKLRKVVI--------KRLEELNDTSSLVNK 235 (253)
T ss_dssp HTCCTTTHHHH-GGGHHHHHGGGGCS---SHHHHHHHHHHHHHHHTSC-HHHHHHHH--------HHHHHCCCSCHHHHH
T ss_pred HHHhccCcccc-CcchHHHHHHHcCc---chhhhHHHHHHHHHHHHcC-HHHHHHHH--------HHHHHhcCcHHHHHH
Confidence 65444433333 46789999999986 8899999999999999754 34333222 223334456777777
Q ss_pred HHHHHHHHH
Q 021242 286 KAVALLKIL 294 (315)
Q Consensus 286 ~A~~~L~~l 294 (315)
....-|..+
T Consensus 236 ~V~egL~rl 244 (253)
T 2db0_A 236 TVKEGISRL 244 (253)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766554
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.097 Score=44.86 Aligned_cols=183 Identities=15% Similarity=0.086 Sum_probs=117.1
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHhccCchh--hHHHH-h-CCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc-----h
Q 021242 11 LVTKLGSVSEQTRAEALAELRLLSKHDAEI--RPMIS-E-AGSIPYLAEILYSSSHAFQENAAATLLNLSITSR-----D 81 (315)
Q Consensus 11 Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~--~~~i~-~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~-----~ 81 (315)
+-+.|.|.+...|..|+..|..+....+.. ..... . ....+.+-..+.+.+..++..++.+|..++..-. +
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 678999999999999999999887543221 11122 2 2345667778888999999999999877654321 1
Q ss_pred hh--hhhcCchHHHHHH-HhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHH
Q 021242 82 SL--MSTRGLLDAISHV-LRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALK 158 (315)
Q Consensus 82 ~~--i~~~~~i~~L~~l-L~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~ 158 (315)
.. ..-...++.|+.= +.+ ....++..+..++..+........ .+++.++..+. +.+|.++..++.
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~----~k~~~~~~a~~~l~~~~~~~~~~~------~~~e~l~~~l~--~Knpkv~~~~l~ 161 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTS----SRATTKTQSMSCILSLCGLDTSIT------QSVELVIPFFE--KKLPKLIAAAAN 161 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSC----CCHHHHHHHHHHHHHHHHTSSSSH------HHHHHHGGGGG--CSCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcC----ccHHHHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHh--ccCHHHHHHHHH
Confidence 11 1123356666643 444 567788888888877664222111 22455566667 568999999888
Q ss_pred HHHHhccC--CC--cHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc
Q 021242 159 ALFGIALY--PL--NRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG 207 (315)
Q Consensus 159 aL~~Ls~~--~~--~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~ 207 (315)
.|..+... .. +....+ ..+++.+..++. +++..+++.|..++..+-.
T Consensus 162 ~l~~~l~~fg~~~~~~k~~l-~~i~~~l~k~l~-d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 162 CVYELMAAFGLTNVNVQTFL-PELLKHVPQLAG-HGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHHHHTTTTCCHHHHH-HHHGGGHHHHHT-CSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCcCCchhHH-HHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHH
Confidence 88876542 11 112221 234566777885 6789999999998888755
|
| >2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.099 Score=44.11 Aligned_cols=147 Identities=16% Similarity=0.186 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCC-----HHHHHHHHHHHHhcCcccchh---hhhhcCchHHH
Q 021242 22 TRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSS-----HAFQENAAATLLNLSITSRDS---LMSTRGLLDAI 93 (315)
Q Consensus 22 ~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-----~~~~~~a~~~L~~la~~~~~~---~i~~~~~i~~L 93 (315)
-...|+..+..+|.+ ++.|..+.++...--|-.+|+..+ +-+|-.++.+++.+...++.. ...+.+.+|..
T Consensus 72 RVcnaLaLlQcvAsh-petr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplC 150 (268)
T 2fv2_A 72 RVCNALALLQCVASH-PETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLC 150 (268)
T ss_dssp HHHHHHHHHHHHHHC-TTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHH
Confidence 346677777778865 899999999998777888886543 347888999999999876543 33578899999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhc-------cccHHHHHHHhhccCCChHHHHHHHHHHHHhccC
Q 021242 94 SHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAK-------RDIIHSLIEIIKTRNSPLRSVKDALKALFGIALY 166 (315)
Q Consensus 94 ~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~-------~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~ 166 (315)
++.+.. ++.-.+..|..++..+-.++.+-.-+... ..++..+|.-+.. ..++...++..++-..|+.+
T Consensus 151 Lrime~----GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~-~ps~RLLKhiircYlRLsdn 225 (268)
T 2fv2_A 151 LRIMES----GSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSK-EPSARLLKHVVRCYLRLSDN 225 (268)
T ss_dssp HHHHHH----SCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTT-SCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHhh----ccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHhcC
Confidence 999998 77788889999999888777654433332 1223333433322 34778888888988888888
Q ss_pred CCcHHHHH
Q 021242 167 PLNRYQVI 174 (315)
Q Consensus 167 ~~~~~~i~ 174 (315)
+..|..+.
T Consensus 226 ~rar~aL~ 233 (268)
T 2fv2_A 226 PRAREALR 233 (268)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87776664
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=95.90 E-value=1.1 Score=45.43 Aligned_cols=261 Identities=10% Similarity=0.095 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHc------CCCHHHHHHHHHHHHhcCcccc-hh-hhh----hcC
Q 021242 21 QTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILY------SSSHAFQENAAATLLNLSITSR-DS-LMS----TRG 88 (315)
Q Consensus 21 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~------~~~~~~~~~a~~~L~~la~~~~-~~-~i~----~~~ 88 (315)
..|..|...|..++..-+ +.+.. -.++.+-..+. +.+-..++.|+.++..++.+.. .. -+. ...
T Consensus 376 s~R~aa~~~L~~l~~~~~---~~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~ 451 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNE---VLVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN 451 (960)
T ss_dssp CHHHHHHHHHHHHHHHCH---HHHHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred CcHHHHHHHHHHHHHHcc---hhHHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence 356677777777775532 12211 12233333343 3455688999999988875421 11 000 002
Q ss_pred chHH----HHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhc
Q 021242 89 LLDA----ISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIA 164 (315)
Q Consensus 89 ~i~~----L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls 164 (315)
..+. ++..|.++. +.++-++..++++|..++..- ....+ ..+++.++..+. +.++.++..|+.+|.+++
T Consensus 452 l~~~l~~~v~p~l~~~~-~~~p~vr~~a~~~lg~~~~~~-~~~~l---~~~l~~l~~~L~--d~~~~V~~~A~~Al~~~~ 524 (960)
T 1wa5_C 452 VVDFFTKEIAPDLTSNN-IPHIILRVDAIKYIYTFRNQL-TKAQL---IELMPILATFLQ--TDEYVVYTYAAITIEKIL 524 (960)
T ss_dssp HHHHHHHHTHHHHHCSS-CSCHHHHHHHHHHHHHTGGGS-CHHHH---HHHHHHHHHHTT--CSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhHHHhcCCC-CCCceehHHHHHHHHHHHhhC-CHHHH---HHHHHHHHHHhC--CCChhHHHHHHHHHHHHH
Confidence 2232 334445421 127889999999999998632 12222 245788888887 457889999999999998
Q ss_pred cCC--------C-cHHHHHh--hCCcHHHHHHHhcCC----CcchHHHHHHHHHHHhcC-hhhHHHHHhcCCHHHHHHHh
Q 021242 165 LYP--------L-NRYQVIA--LGGVQPLFSLVVNGG----RAGIVEDASAVIAQIAGC-EESVDEFKKCCGIGVLVDLL 228 (315)
Q Consensus 165 ~~~--------~-~~~~i~~--~g~v~~L~~lL~~~~----~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~~i~~Lv~ll 228 (315)
... + .+..+.. ...+..|+.++.... .....+.++.+|..+... .+....... ..++.++..+
T Consensus 525 ~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~-~l~~~L~~~l 603 (960)
T 1wa5_C 525 TIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP-QLLAQFIEIV 603 (960)
T ss_dssp TCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH-HHHHHHHHHH
T ss_pred hcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHH
Confidence 742 1 2333321 244555666665321 001224455555554321 111000110 1234444444
Q ss_pred hc--CCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhh
Q 021242 229 DL--GTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 229 ~~--~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
.. .++.++.....++.++..++....++....+. ...+|.+..+++.+.......+-.++..+..
T Consensus 604 ~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~---~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~ 670 (960)
T 1wa5_C 604 TIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLV---DSMMPTFLTVFSEDIQEFIPYVFQIIAFVVE 670 (960)
T ss_dssp HHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHH---HHHHHHHHHHHHTTCTTTHHHHHHHHHHHHH
T ss_pred HHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHH---HHHHHHHHHHHHhhhHhhHHHHHHHHHHHHH
Confidence 32 11235666767788888877653322222332 4577888888888766677777776665543
|
| >2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.068 Score=45.10 Aligned_cols=98 Identities=15% Similarity=0.110 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCC--CChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHH
Q 021242 196 EDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTG--SGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIA 273 (315)
Q Consensus 196 ~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~ 273 (315)
-.|++.|..++++++.|..|.++...--|...|..... ..+..|-.+.+++..+.+.+.+++...+++ .+.+|..+
T Consensus 74 cnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~--tEiiplCL 151 (268)
T 2fv2_A 74 CNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLT--TEIIPLCL 151 (268)
T ss_dssp HHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHH--TTHHHHHH
T ss_pred HHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHh--hhHHHHHH
Confidence 34788888899999999999998865555556665411 124677789999999998877677788887 78999999
Q ss_pred HHHhhCCHHHHHHHHHHHHHHh
Q 021242 274 DVAQNGSAKGKTKAVALLKILV 295 (315)
Q Consensus 274 ~ll~~~~~~~k~~A~~~L~~l~ 295 (315)
..++.|++..|.-|..+++.+=
T Consensus 152 rime~GselSKtvAtfIlqKIL 173 (268)
T 2fv2_A 152 RIMESGSELSKTVATFILQKIL 173 (268)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHHh
Confidence 9999999999999999887763
|
| >3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.54 Score=40.99 Aligned_cols=190 Identities=8% Similarity=-0.002 Sum_probs=108.0
Q ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc-hhhhhhcCchHHHH-HHHhcCCCCCCHHHHHHHHHHHHHhhcCCCch
Q 021242 49 SIPYLAEILYSSSHAFQENAAATLLNLSITSR-DSLMSTRGLLDAIS-HVLRHHSTSTSSAAVQSSAATLHSLLVVDSYR 126 (315)
Q Consensus 49 ~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~-~~~i~~~~~i~~L~-~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~ 126 (315)
.+..+.++++ ...+.+.-++.+|+-+..+++ .....+.+.-..++ .++........+..+..+++++.|+-.++..+
T Consensus 104 ~l~~l~kil~-WP~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~ 182 (304)
T 3ebb_A 104 QLQILWKAIN-CPEDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQ 182 (304)
T ss_dssp HHHHHHHHHT-SCTTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHH
T ss_pred HHHHHHHHHc-CCHHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhH
Confidence 4677788774 444556667777777666654 33433322223333 23322111245667888999999998888777
Q ss_pred hhhhhc-cccHHHHHHHhhccCCChHHHHHHHHHHHHhccC---CCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHH
Q 021242 127 PIIGAK-RDIIHSLIEIIKTRNSPLRSVKDALKALFGIALY---PLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVI 202 (315)
Q Consensus 127 ~~i~~~-~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~---~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L 202 (315)
..+... ..+++.+...+. ..+..++..++..+.|++.. ....... ..++..+..++....+.+....++.+|
T Consensus 183 ~~l~~~~~~il~~~~~~~~--~~nknl~iA~ATl~~NlAv~~~~~~~~~~~--~~ll~~l~~il~~~~d~EalyR~LvAL 258 (304)
T 3ebb_A 183 KLMMSQRESLMSHAIELKS--GSNKNIHIALATLALNYSVCFHKDHNIEGK--AQCLSLISTILEVVQDLEATFRLLVAL 258 (304)
T ss_dssp HHHHHTHHHHHHHHHGGGS--SCCHHHHHHHHHHHHHHHHHHHHSCCHHHH--HHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc--CCChhHHHHHHHHHHHHHHHHhhcCCchHH--HHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 766542 233333333333 34677888888999999862 1111111 113444555554335667788888889
Q ss_pred HHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHH
Q 021242 203 AQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVS 244 (315)
Q Consensus 203 ~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~ 244 (315)
.+|...+.....+.+.=++...++-+... ....++.+++-.
T Consensus 259 GtL~~~~~~~~~lak~l~~~~~v~~~~~~-~~~~kv~~~~~~ 299 (304)
T 3ebb_A 259 GTLISDDSNAVQLAKSLGVDSQIKKYSSV-SEPAKVSECCRF 299 (304)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHGGGGGGC-CSSHHHHHHHHH
T ss_pred HHHHhCChhHHHHHHHcCHHHHHHHHHhC-CCchhHHHHHHH
Confidence 88876554455555544555555544432 124566655433
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=95.43 E-value=1.7 Score=43.92 Aligned_cols=222 Identities=10% Similarity=0.066 Sum_probs=120.5
Q ss_pred CCCHHHHHHHHHHHHHHhccCchhhHHHH---h-CCCHH----HHHHHHcCC---CHHHHHHHHHHHHhcCcccchhhhh
Q 021242 17 SVSEQTRAEALAELRLLSKHDAEIRPMIS---E-AGSIP----YLAEILYSS---SHAFQENAAATLLNLSITSRDSLMS 85 (315)
Q Consensus 17 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~---~-~g~i~----~Lv~lL~~~---~~~~~~~a~~~L~~la~~~~~~~i~ 85 (315)
+.++..+..|+.++..++.........+. . ....+ .++..|.+. .+-+|..|+++|..++..-.+..
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~-- 493 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQ-- 493 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHH--
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHH--
Confidence 55678899999999999753211000000 0 02222 234445655 78899999999999886532222
Q ss_pred hcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCC---------chhhhh-hccccHHHHHHHhhccCCC-hH--H
Q 021242 86 TRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDS---------YRPIIG-AKRDIIHSLIEIIKTRNSP-LR--S 152 (315)
Q Consensus 86 ~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~---------~~~~i~-~~~g~i~~Lv~ll~~~~~~-~~--~ 152 (315)
-...++.++..|.+ ++..++..|+.+|.++....+ .+..+. ....+++.|+.++...... ++ .
T Consensus 494 l~~~l~~l~~~L~d----~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~ 569 (960)
T 1wa5_C 494 LIELMPILATFLQT----DEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAE 569 (960)
T ss_dssp HHHHHHHHHHHTTC----SCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTS
T ss_pred HHHHHHHHHHHhCC----CChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccc
Confidence 22356777777775 578899999999999986421 233332 2345566777777731000 11 2
Q ss_pred HHHHHHHHHHhcc--CCCcHHHHHhhCCcHHHHHHHhc---CC-CcchHHHHHHHHHHHhcC--hhhHHHHHhcCCHHHH
Q 021242 153 VKDALKALFGIAL--YPLNRYQVIALGGVQPLFSLVVN---GG-RAGIVEDASAVIAQIAGC--EESVDEFKKCCGIGVL 224 (315)
Q Consensus 153 ~~~a~~aL~~Ls~--~~~~~~~i~~~g~v~~L~~lL~~---~~-~~~~~~~a~~~L~~L~~~--~~~~~~i~~~~~i~~L 224 (315)
...+..+|..++. .++....+ ...++.+...+.. ++ +..+...++.+|..+... ++....+. ...+|.+
T Consensus 570 ~e~l~~al~~vv~~~~~~~~p~~--~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~-~~~~p~~ 646 (960)
T 1wa5_C 570 NEFLMRSIFRVLQTSEDSIQPLF--PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLV-DSMMPTF 646 (960)
T ss_dssp CHHHHHHHHHHHHHHTTTTGGGH--HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHH-HHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHH-HHHHHHH
Confidence 2345555555443 12221111 1234455555532 22 334555677777777553 33333332 2346777
Q ss_pred HHHhhcCCCCChhHHHHHHHHHHHHh
Q 021242 225 VDLLDLGTGSGHRVKENAVSALLNLV 250 (315)
Q Consensus 225 v~ll~~~~~~~~~~~~~a~~~L~~l~ 250 (315)
...+... .....+.+..++..+.
T Consensus 647 ~~iL~~~---~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 647 LTVFSED---IQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHHHHTT---CTTTHHHHHHHHHHHH
T ss_pred HHHHHhh---hHhhHHHHHHHHHHHH
Confidence 7777754 3445555555555443
|
| >1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* | Back alignment and structure |
|---|
Probab=95.20 E-value=1.5 Score=38.53 Aligned_cols=199 Identities=14% Similarity=0.069 Sum_probs=143.4
Q ss_pred hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCC-Cchh----hhhhccccHHHHHHHhhccCCChHHHHHHHH
Q 021242 84 MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVD-SYRP----IIGAKRDIIHSLIEIIKTRNSPLRSVKDALK 158 (315)
Q Consensus 84 i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~-~~~~----~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~ 158 (315)
+...+.+..|+..|.. -+-+.+..++.+..++.... .++. .+..... .|.-++.-. +++++-..+-.
T Consensus 74 i~~~dll~~Li~~l~~----L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~pe---il~~L~~gY-e~~diAl~~G~ 145 (341)
T 1upk_A 74 LYNSGLLSTLVADLQL----IDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQN---ILFMLLKGY-ESPEIALNCGI 145 (341)
T ss_dssp HHHHSHHHHHHHTGGG----SCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTH---HHHHHHHGG-GSTTTHHHHHH
T ss_pred HHHhCHHHHHHHhccc----CCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHH---HHHHHHHhh-ccchhHhHHHH
Confidence 3477889999999986 57899999998888888633 2222 2222222 222333322 35566677778
Q ss_pred HHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHH-hcChhhHHHHHhcC---CHHHHHHHhhcCCCC
Q 021242 159 ALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQI-AGCEESVDEFKKCC---GIGVLVDLLDLGTGS 234 (315)
Q Consensus 159 aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L-~~~~~~~~~i~~~~---~i~~Lv~ll~~~~~~ 234 (315)
.|.....++.....++..+.+..+.+.+. .++..+...|..+++.| +.+.....++.+.. .....-++|.++
T Consensus 146 mLRecir~e~la~~iL~~~~f~~fF~yv~-~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~--- 221 (341)
T 1upk_A 146 MLRECIRHEPLAKIILWSEQFYDFFRYVE-MSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE--- 221 (341)
T ss_dssp HHHHHHTSHHHHHHHHHSGGGGHHHHHTT-CSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS---
T ss_pred HHHHHHHhHHHHHHHhccHHHHHHHHHhc-CCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCC---
Confidence 88887778888888888888888999885 57888889999999988 45666666776654 366777788875
Q ss_pred ChhHHHHHHHHHHHHhccCCHHHHHHHHHHc--cCcHHHHHHHHhhCCHHHHHHHHHHHHHHhh
Q 021242 235 GHRVKENAVSALLNLVNFGGERAAEEVKEMA--MQVADGIADVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 235 ~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~--~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
+.-.|.+++..|..|-...+ ...-|.++- ..-+..+..++++.+..++-.|=.+.+.+..
T Consensus 222 NYVTkRQSlKLLgelLldr~--N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 222 NYVTKRQSLKLLGELLLDRH--NFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp SHHHHHHHHHHHHHHHHSGG--GHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHhCch--HHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeee
Confidence 88899999999999986422 223343321 2346777789999999999999999998875
|
| >3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.83 E-value=1.1 Score=39.01 Aligned_cols=164 Identities=16% Similarity=0.086 Sum_probs=94.4
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHH----HHHcC-CCHHHHHHHHHHHHhcCcccc-
Q 021242 7 TVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLA----EILYS-SSHAFQENAAATLLNLSITSR- 80 (315)
Q Consensus 7 ~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv----~lL~~-~~~~~~~~a~~~L~~la~~~~- 80 (315)
.+..+...++.+. +.+.-++..++-.+.+ +.....+.+.+.-..++ ..+.+ ..+..+..+++++.|+..+..
T Consensus 104 ~l~~l~kil~WP~-~~~fPvLDLlRl~~l~-p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g 181 (304)
T 3ebb_A 104 QLQILWKAINCPE-DIVFPALDILRLSIKH-PSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAG 181 (304)
T ss_dssp HHHHHHHHHTSCT-TTCHHHHHHHHHHTTS-HHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHH
T ss_pred HHHHHHHHHcCCH-HhHHHHHHHHHHHHcC-ccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchh
Confidence 4455555554444 5666777777766643 44555555433333444 22222 345678899999999988864
Q ss_pred hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcC-CCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHH
Q 021242 81 DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVV-DSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKA 159 (315)
Q Consensus 81 ~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~a 159 (315)
+.++.. ..+.+++.+.+-....+..++..++..+.|++.. ...+. ..+...++..+..++.. ..+.+....++-+
T Consensus 182 ~~~l~~--~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~-~~~~~~ll~~l~~il~~-~~d~EalyR~LvA 257 (304)
T 3ebb_A 182 QKLMMS--QRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHN-IEGKAQCLSLISTILEV-VQDLEATFRLLVA 257 (304)
T ss_dssp HHHHHH--THHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCC-HHHHHHHHHHHHHHHTT-CCCHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCC-chHHHHHHHHHHHHHhc-cCCHHHHHHHHHH
Confidence 554432 1233444443211125778888999999999952 11111 11112234555566654 4577888889999
Q ss_pred HHHhccCCCcHHHHHhh
Q 021242 160 LFGIALYPLNRYQVIAL 176 (315)
Q Consensus 160 L~~Ls~~~~~~~~i~~~ 176 (315)
|.+|...+.....+.+.
T Consensus 258 LGtL~~~~~~~~~lak~ 274 (304)
T 3ebb_A 258 LGTLISDDSNAVQLAKS 274 (304)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHHhCChhHHHHHHH
Confidence 99998765444444443
|
| >1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.58 Score=41.12 Aligned_cols=195 Identities=12% Similarity=0.075 Sum_probs=133.8
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhH----HHHhCCCHHHHHHHHcC-CCHHHHHHHHHHHHhcCcccc
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRP----MISEAGSIPYLAEILYS-SSHAFQENAAATLLNLSITSR 80 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~----~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~la~~~~ 80 (315)
+.+..|+..|..-+.+.|..++....++.......+- .+.. --+.|.-++.. .++++--.+-..|+.+..++.
T Consensus 78 dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRecir~e~ 155 (341)
T 1upk_A 78 GLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLRECIRHEP 155 (341)
T ss_dssp SHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSHH
T ss_pred CHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHHHHHhHH
Confidence 4556677777778889999999988888876654432 3332 12222222222 345555667777888887775
Q ss_pred -hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcC-CCchhhhhh-c-cccHHHHHHHhhccCCChHHHHHH
Q 021242 81 -DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVV-DSYRPIIGA-K-RDIIHSLIEIIKTRNSPLRSVKDA 156 (315)
Q Consensus 81 -~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~-~-~g~i~~Lv~ll~~~~~~~~~~~~a 156 (315)
.+++...+.+..+.++... ++-++...|..++..|-.. ......+.. . .-++...-+++. +++.-.+..+
T Consensus 156 la~~iL~~~~f~~fF~yv~~----~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~--S~NYVTkRQS 229 (341)
T 1upk_A 156 LAKIILWSEQFYDFFRYVEM----STFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLH--SENYVTKRQS 229 (341)
T ss_dssp HHHHHHHSGGGGHHHHHTTC----SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTT--CSSHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHhcC----CCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhc--CCcchhHHHH
Confidence 5555566677788888886 7889888899999987643 322222221 1 245566667888 5688899999
Q ss_pred HHHHHHhccCCCcHHHHHhh----CCcHHHHHHHhcCCCcchHHHHHHHHHHHhcCh
Q 021242 157 LKALFGIALYPLNRYQVIAL----GGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCE 209 (315)
Q Consensus 157 ~~aL~~Ls~~~~~~~~i~~~----g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~ 209 (315)
++.|..|-.++.|...|.+- .-+..++.+|+ +++..++-.|..+......+|
T Consensus 230 lKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~-d~sk~Iq~EAFhVFKvFVANP 285 (341)
T 1upk_A 230 LKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLR-DKSRNIQFEAFHVFKVFVANP 285 (341)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTT-CSCHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhc-CchhchhhhhhhheeeeeeCC
Confidence 99999999999988777642 44666778885 677888989998888765443
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.22 Score=42.54 Aligned_cols=145 Identities=10% Similarity=0.077 Sum_probs=91.3
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHhccCc---hhhHHHH--hCCCHHHHHHH-HcCCCHHHHHHHHHHHHhcCcccc-hh
Q 021242 10 SLVTKLGSVSEQTRAEALAELRLLSKHDA---EIRPMIS--EAGSIPYLAEI-LYSSSHAFQENAAATLLNLSITSR-DS 82 (315)
Q Consensus 10 ~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~---~~~~~i~--~~g~i~~Lv~l-L~~~~~~~~~~a~~~L~~la~~~~-~~ 82 (315)
.+-..+..++..++..++.++..++..-. ..+.... -...+|.|+.= +.+..+.++..|..++..+..... ..
T Consensus 59 ~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~ 138 (278)
T 4ffb_C 59 LFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT 138 (278)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH
Confidence 34456678889999999999998875321 1122222 24567878764 777788888888888866643221 11
Q ss_pred hhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc-CC-CchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHH
Q 021242 83 LMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV-VD-SYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKAL 160 (315)
Q Consensus 83 ~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~-~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL 160 (315)
. .++.+...+++ .++.++..++..|..+.. +. .....-.....+++.+..++. +.++.++..|..++
T Consensus 139 ~-----~~e~l~~~l~~----Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~--d~~~~VR~aA~~l~ 207 (278)
T 4ffb_C 139 Q-----SVELVIPFFEK----KLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAG--HGDRNVRSQTMNLI 207 (278)
T ss_dssp H-----HHHHHGGGGGC----SCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHT--CSSHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHhc----cCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHh--CCcHHHHHHHHHHH
Confidence 1 23455555665 688888888888877653 21 111100000134567778888 56899999999998
Q ss_pred HHhcc
Q 021242 161 FGIAL 165 (315)
Q Consensus 161 ~~Ls~ 165 (315)
..+-.
T Consensus 208 ~~ly~ 212 (278)
T 4ffb_C 208 VEIYK 212 (278)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 87765
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=94.41 E-value=0.074 Score=50.10 Aligned_cols=169 Identities=15% Similarity=0.103 Sum_probs=106.2
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHH-hCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhh
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMIS-EAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLM 84 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i 84 (315)
..+..++..+..+..++|..++-.|.-+ ++ .+. =.++++.++..|++.|.+++..|+.+|..++ ..+ .
T Consensus 263 ~IL~qLV~~l~~~~WEVRHGGLLGLKYL-~D------LL~~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA-~p~-~-- 331 (800)
T 3oc3_A 263 DIIEQLVGFLDSGDWQVQFSGLIALGYL-KE------FVEDKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP-ITD-S-- 331 (800)
T ss_dssp CHHHHHTTGGGCSCHHHHHHHHHHHHHT-GG------GCCCHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC-CSS-T--
T ss_pred HHHHHHHhhcCCCCeeehhhhHHHHHHH-HH------HHHHHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc-chh-h--
Confidence 4455666666788899999999998877 11 111 2566888888889999999999999999998 111 1
Q ss_pred hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhc
Q 021242 85 STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIA 164 (315)
Q Consensus 85 ~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls 164 (315)
-...+..+++.|.+.. +-..........|..|...+... .....++|.|...++ +.-+.++..++++|..+.
T Consensus 332 -l~~LL~iLWd~L~~LD--DLSASTgSVMdLLAkL~s~p~~a---~~dp~LVPRL~PFLR--HtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 332 -LDLVLEKCWKNIESEE--LISVSKTSNLSLLTKIYRENPEL---SIPPERLKDIFPCFT--SPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp -HHHHHHHHHHHHHTCC--SCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGGGTGGGGT--CSSHHHHHHHHHHTTTCC
T ss_pred -HHHHHHHHHHHhhhhc--ccchhhHHHHHHHHHHHcCCccc---ccChHHHHHHHhhhc--CCcHHHHHHHHHHHHHHH
Confidence 1124667777776410 00011223444555555434321 112366899999999 557899999999998877
Q ss_pred cCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHH
Q 021242 165 LYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIA 203 (315)
Q Consensus 165 ~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~ 203 (315)
...+++.+.+-+.-+++.++++.+..+-.
T Consensus 404 ----------~~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 404 ----------EESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp ----------CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred ----------hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 11223333333322356667766666553
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=94.33 E-value=3.5 Score=41.42 Aligned_cols=155 Identities=13% Similarity=0.048 Sum_probs=97.0
Q ss_pred CCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHH---cCCCHHHHHHHHHHHHhcCccc-c-hhhhhhcCch
Q 021242 16 GSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEIL---YSSSHAFQENAAATLLNLSITS-R-DSLMSTRGLL 90 (315)
Q Consensus 16 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL---~~~~~~~~~~a~~~L~~la~~~-~-~~~i~~~~~i 90 (315)
.+.++..+..++.++..++..-... +...++.++..+ .++++.++..+++++..++..- . .+. -...+
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~-----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~--l~~vl 531 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVN-----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVM--INSVL 531 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSS-----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHH--HTTTH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCch-----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHH--HHHHH
Confidence 5567889999999999998653221 123455566555 2356889999999999887542 1 222 23577
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhh-hhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCC--
Q 021242 91 DAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPII-GAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYP-- 167 (315)
Q Consensus 91 ~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i-~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~-- 167 (315)
+.|+..|.+ +.++..|+.++.+++.. .+..+ .....++..|..++.....+...+..+..++..+...-
T Consensus 532 ~~l~~~l~~------~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~ 603 (963)
T 2x19_B 532 PLVLHALGN------PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQV 603 (963)
T ss_dssp HHHHHHTTC------GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHhCC------chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCH
Confidence 888877753 46788999999999852 22222 22234556666777632235677788888888887632
Q ss_pred CcHHHHHhhCCcHHHHHHH
Q 021242 168 LNRYQVIALGGVQPLFSLV 186 (315)
Q Consensus 168 ~~~~~i~~~g~v~~L~~lL 186 (315)
+.....+ ...++++...+
T Consensus 604 ~~~~~~~-~~l~~~l~~~l 621 (963)
T 2x19_B 604 EEILKNL-HSLISPYIQQL 621 (963)
T ss_dssp HHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHH
Confidence 2233222 34455555544
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=94.23 E-value=0.71 Score=39.34 Aligned_cols=173 Identities=12% Similarity=0.072 Sum_probs=110.0
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHH----cCCCHHHHHHHHHHHHhcCcc-cch--h
Q 021242 10 SLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEIL----YSSSHAFQENAAATLLNLSIT-SRD--S 82 (315)
Q Consensus 10 ~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL----~~~~~~~~~~a~~~L~~la~~-~~~--~ 82 (315)
.+...|-+.+...+.+|+..|......++ +.+.. .+..+++.+ .+++..+...++.+|..+... .+. +
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~---~~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~ 124 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSP---RSLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETP 124 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCH---HHHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhCh---HHHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 44556667788899999999998765433 22221 233334433 367888888888888665321 111 1
Q ss_pred hh-h-hcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHH
Q 021242 83 LM-S-TRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKAL 160 (315)
Q Consensus 83 ~i-~-~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL 160 (315)
+. . ..-.+|.|+.-+-+ +.+.++..+-.++..+... ... ..+++.++.-++ +.+...+..++..+
T Consensus 125 ~~~~ea~~~lP~LveKlGd----~k~~vR~~~r~il~~l~~v------~~~-~~v~~~l~~g~k--sKN~R~R~e~l~~l 191 (266)
T 2of3_A 125 MSQEEVSAFVPYLLLKTGE----AKDNMRTSVRDIVNVLSDV------VGP-LKMTPMLLDALK--SKNARQRSECLLVI 191 (266)
T ss_dssp CCHHHHHHHHHHHHHGGGC----SSHHHHHHHHHHHHHHHHH------HCH-HHHHHHHHHGGG--CSCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCC----ChHHHHHHHHHHHHHHHHH------CCH-HHHHHHHHHHHc--cCCHHHHHHHHHHH
Confidence 11 0 12357777777755 5677888777777666531 111 234677777777 45788888898888
Q ss_pred HHhccCCCcHHHHHhhCCc---HHHHHHHhcCCCcchHHHHHHHHHHH
Q 021242 161 FGIALYPLNRYQVIALGGV---QPLFSLVVNGGRAGIVEDASAVIAQI 205 (315)
Q Consensus 161 ~~Ls~~~~~~~~i~~~g~v---~~L~~lL~~~~~~~~~~~a~~~L~~L 205 (315)
..+-...-.. ...++ +.+..++. +++..++..|+.++..+
T Consensus 192 ~~li~~~G~~----~~~~l~~~~~ia~ll~-D~d~~VR~aAl~~lve~ 234 (266)
T 2of3_A 192 EYYITNAGIS----PLKSLSVEKTVAPFVG-DKDVNVRNAAINVLVAC 234 (266)
T ss_dssp HHHHHHHCSG----GGGGGCHHHHHGGGGG-CSSHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC----ccccccchHHHHHHHc-CCCHHHHHHHHHHHHHH
Confidence 8775421111 24568 99999995 68889999998888765
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=93.76 E-value=0.82 Score=38.97 Aligned_cols=187 Identities=13% Similarity=0.057 Sum_probs=110.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHHh--cCCCCCCHHHHHHHHHHHHHhhc---CCCc
Q 021242 51 PYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLR--HHSTSTSSAAVQSSAATLHSLLV---VDSY 125 (315)
Q Consensus 51 ~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~--~~~~~~~~~~~~~a~~~L~~Ls~---~~~~ 125 (315)
+-+...+.+.|.+-+..|+..|..........++ ..++.+++.+. -. ..+..+...+..+|..+.. ..+.
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~---~~lDll~kw~~lr~~--d~N~~v~~~~L~~L~~l~~~l~~~~y 123 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLL---SNSDLLLKWCTLRFF--ETNPAALIKVLELCKVIVELIRDTET 123 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHH---HTHHHHHHHHHHHTT--SCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHH---HHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 3456666677888888888888664332223333 13444555442 11 1467777777777777642 2222
Q ss_pred hhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhcc-CCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHH
Q 021242 126 RPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL-YPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQ 204 (315)
Q Consensus 126 ~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~ 204 (315)
+..-.+..-++|.|+.=+. +....++..+-.+|..++. .+ ....++.++.-+. +.+...++.++..+..
T Consensus 124 ~~~~~ea~~~lP~LveKlG--d~k~~vR~~~r~il~~l~~v~~-------~~~v~~~l~~g~k-sKN~R~R~e~l~~l~~ 193 (266)
T 2of3_A 124 PMSQEEVSAFVPYLLLKTG--EAKDNMRTSVRDIVNVLSDVVG-------PLKMTPMLLDALK-SKNARQRSECLLVIEY 193 (266)
T ss_dssp CCCHHHHHHHHHHHHHGGG--CSSHHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHGGG-CSCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHHHHc-cCCHHHHHHHHHHHHH
Confidence 2222222456888888776 4456677666666655543 11 1234455666664 4567777888877777
Q ss_pred HhcChhhHHHHHhcCCH---HHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHH
Q 021242 205 IAGCEESVDEFKKCCGI---GVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAE 259 (315)
Q Consensus 205 L~~~~~~~~~i~~~~~i---~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 259 (315)
+-.. .|.. ...++ +.+.+++.+. +..++..|..++..+....++....
T Consensus 194 li~~-~G~~---~~~~l~~~~~ia~ll~D~---d~~VR~aAl~~lve~y~~~Gd~v~k 244 (266)
T 2of3_A 194 YITN-AGIS---PLKSLSVEKTVAPFVGDK---DVNVRNAAINVLVACFKFEGDQMWK 244 (266)
T ss_dssp HHHH-HCSG---GGGGGCHHHHHGGGGGCS---SHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHh-cCCC---ccccccchHHHHHHHcCC---CHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 6221 1111 23357 8888899865 8899999999988876654444433
|
| >3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A* | Back alignment and structure |
|---|
Probab=93.52 E-value=0.98 Score=40.01 Aligned_cols=127 Identities=13% Similarity=0.142 Sum_probs=90.2
Q ss_pred HHhcCcccchhh--hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCC
Q 021242 72 LLNLSITSRDSL--MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSP 149 (315)
Q Consensus 72 L~~la~~~~~~~--i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~ 149 (315)
|.++-.++.+.+ +++.+|+..+..+... ++.++....+..|...+....-+.. .-...+|.++..+.. +++
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinY----pN~~l~RaG~KLLLQVSDaksL~~t--~L~e~LPFi~~~i~~-h~e 338 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQY----PNNDLIRAGCKLLLQVSDAKALAKT--PLENILPFLLRLIEI-HPD 338 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTS----SCHHHHHHHHHHHHHHTTCGGGGTS--CCTTHHHHHHHHHHH-CCC
T ss_pred HHHHHhcccccccceeecccceeEEEEeec----CCcHHHHhhhheeeeecchHHHhhc--cccccchHHHHHhcc-CCC
Confidence 456666765432 4588999999999987 6778887888888776654332221 112448999998886 578
Q ss_pred hHHHHHHHHHHHHhccCCC-cHHHHHhhCCcHHHHHHHhcCC------CcchHHHHHHHHHHH
Q 021242 150 LRSVKDALKALFGIALYPL-NRYQVIALGGVQPLFSLVVNGG------RAGIVEDASAVIAQI 205 (315)
Q Consensus 150 ~~~~~~a~~aL~~Ls~~~~-~~~~i~~~g~v~~L~~lL~~~~------~~~~~~~a~~~L~~L 205 (315)
+++.-...+.|.|...+.. .+...+..|+++.|-+.+...+ +..-+..+|++++|.
T Consensus 339 DdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~ 401 (619)
T 3c2g_A 339 DEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNC 401 (619)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHH
T ss_pred cceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHH
Confidence 8999999999999988764 5556678999999988885422 122245588888873
|
| >2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=93.24 E-value=1.3 Score=36.92 Aligned_cols=151 Identities=13% Similarity=0.166 Sum_probs=98.6
Q ss_pred ccccHHHHHHHhhcc--C-------CChHHHHHHHHHHHHhccCCCcHHHHHh-hCCcHHHHHHHhcCCCcchHHHHHHH
Q 021242 132 KRDIIHSLIEIIKTR--N-------SPLRSVKDALKALFGIALYPLNRYQVIA-LGGVQPLFSLVVNGGRAGIVEDASAV 201 (315)
Q Consensus 132 ~~g~i~~Lv~ll~~~--~-------~~~~~~~~a~~aL~~Ls~~~~~~~~i~~-~g~v~~L~~lL~~~~~~~~~~~a~~~ 201 (315)
.+| +..|+.+|... . .+......++++|..+.-++.....++. .+++..+...|. .++..++..++.+
T Consensus 42 ~~G-l~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~-s~~~~~r~~~leL 119 (233)
T 2f31_A 42 AEG-LASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMD-PAVPNMMIDAAKL 119 (233)
T ss_dssp HHH-HHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCC-TTSHHHHHHHHHH
T ss_pred HhH-HHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhC-CCCchHHHHHHHH
Confidence 356 77888777631 0 1345567888999988877777777765 467888887774 4667788889999
Q ss_pred HHHHhcChh--h-HHHHHhc--------C--CHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCH-----HHHHHHHH
Q 021242 202 IAQIAGCEE--S-VDEFKKC--------C--GIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGE-----RAAEEVKE 263 (315)
Q Consensus 202 L~~L~~~~~--~-~~~i~~~--------~--~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~-----~~~~~i~~ 263 (315)
|..+|..+. | ...+.++ + -...+++.++.. .....+-.+...+..+.....+ ..+.++..
T Consensus 120 L~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~--~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~ 197 (233)
T 2f31_A 120 LSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG--TSIALKVGCLQLINALITPAEELDFRVHIRSELMR 197 (233)
T ss_dssp HHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT--SCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcC--ChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 998887643 6 5555432 1 256677777643 3566777777777777654433 23455555
Q ss_pred HccCcHHHHHHHHhhCCHHHHHHHH
Q 021242 264 MAMQVADGIADVAQNGSAKGKTKAV 288 (315)
Q Consensus 264 ~~~g~~~~L~~ll~~~~~~~k~~A~ 288 (315)
.|..+.+-.+-..+++.....-.
T Consensus 198 --~Gl~~il~~l~~~~~~~L~~Qi~ 220 (233)
T 2f31_A 198 --LGLHQVLQELREIENEDMKVQLC 220 (233)
T ss_dssp --TTHHHHHHHHHHCCCHHHHHHHH
T ss_pred --CChHHHHHHHhccCCHHHHHHHH
Confidence 67777666666557777665443
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=92.41 E-value=0.053 Score=45.84 Aligned_cols=52 Identities=12% Similarity=0.092 Sum_probs=27.8
Q ss_pred ChhHHHHHHHH-----HHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHH
Q 021242 235 GHRVKENAVSA-----LLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVA 289 (315)
Q Consensus 235 ~~~~~~~a~~~-----L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~ 289 (315)
+..++..+... |..+..+....++..+.+ .-+.+.|..+ ++.++.|+..|..
T Consensus 183 d~~VR~aaa~~l~~~~L~~Ll~D~d~~VR~~aa~--~l~~~~L~~L-~D~~~~VR~aa~~ 239 (244)
T 1lrv_A 183 EPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVE--HASLEALREL-DEPDPEVRLAIAG 239 (244)
T ss_dssp SHHHHHHHHHHCCGGGGGGGGGCSSHHHHHHHHH--HSCHHHHHHC-CCCCHHHHHHHHC
T ss_pred CHHHHHHHHHhCCHHHHHHHHcCCCHHHHHHHHH--cCCHHHHHHc-cCCCHHHHHHHHH
Confidence 44555444422 233333333345555555 2224555556 7778999988865
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=92.26 E-value=4.3 Score=37.43 Aligned_cols=123 Identities=15% Similarity=0.129 Sum_probs=84.6
Q ss_pred CCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHH
Q 021242 16 GSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISH 95 (315)
Q Consensus 16 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~ 95 (315)
..+++..++-|+..|..+-++-|+ .+..+|..++++..+.|..+|..|++.|..+|.+ + .+ ....+.|.+
T Consensus 38 ~kg~~k~K~LaaQ~I~kffk~FP~-----l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~--~i--~kiaDvL~Q 107 (507)
T 3u0r_A 38 VKGGTKEKRLAAQFIPKFFKHFPE-----LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG-E--NL--PRVADILTQ 107 (507)
T ss_dssp GGSCHHHHHHHHHHHHHHGGGCGG-----GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-T--CH--HHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhhChh-----hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-h--hh--hhHHHHHHH
Confidence 345678999999999999888887 3445688999999999999999999999999987 2 11 124677889
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHH
Q 021242 96 VLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFG 162 (315)
Q Consensus 96 lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~ 162 (315)
+|+. +.+.-....-.+|..|-..+. .+.+..|+.-+. .+++.+++.++.-|..
T Consensus 108 lLqt----dd~~E~~~V~~sL~sllk~Dp--------k~tl~~lf~~i~--~~~e~~Rer~lkFi~~ 160 (507)
T 3u0r_A 108 LLQT----DDSAEFNLVNNALLSIFKMDA--------KGTLGGLFSQIL--QGEDIVRERAIKFLST 160 (507)
T ss_dssp HTTC----CCHHHHHHHHHHHHHHHHHCH--------HHHHHHHHHHHH--HSCHHHHHHHHHHHHH
T ss_pred HHhc----cchHHHHHHHHHHHHHHhcCh--------HHHHHHHHHHHc--ccchHHHHHHHHHHHH
Confidence 9986 443333344444444443221 233555666555 3466777777777753
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=91.60 E-value=2.9 Score=42.19 Aligned_cols=217 Identities=11% Similarity=0.026 Sum_probs=116.8
Q ss_pred CCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHH---c--CCCHHHHHHHHHHHHhcCccc-c-hhhhhhcCch
Q 021242 18 VSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEIL---Y--SSSHAFQENAAATLLNLSITS-R-DSLMSTRGLL 90 (315)
Q Consensus 18 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL---~--~~~~~~~~~a~~~L~~la~~~-~-~~~i~~~~~i 90 (315)
.++..+..|+.++..++..-.... ...++.++.++ . +.++.++..++++|..++..- + .+.+ ...+
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl 548 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAI 548 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHH
Confidence 466789999999999975432211 23455555544 3 237889999999999887432 1 2111 1245
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhh-hhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccC--C
Q 021242 91 DAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPII-GAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALY--P 167 (315)
Q Consensus 91 ~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i-~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~--~ 167 (315)
+.|+..|. +.++..|+.++.+++... +..+ .....++..|..++..+..+...+..+..++..++.. +
T Consensus 549 ~~l~~~l~-------~~v~~~A~~al~~l~~~~--~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~ 619 (971)
T 2x1g_F 549 NLLVRGLN-------SSMSAQATLGLKELCRDC--QLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRP 619 (971)
T ss_dssp HHHHHHHH-------SSCHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHhC-------hHHHHHHHHHHHHHHHHH--HHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCH
Confidence 55555552 245778999999998432 2222 2334566677777774223567777888888887653 2
Q ss_pred CcHHHHHhhCCcHHHHHHHhc---CC--CcchHHHHHHHHHHHh---cC--h---hhH------HHH--HhcCCHHHHHH
Q 021242 168 LNRYQVIALGGVQPLFSLVVN---GG--RAGIVEDASAVIAQIA---GC--E---ESV------DEF--KKCCGIGVLVD 226 (315)
Q Consensus 168 ~~~~~i~~~g~v~~L~~lL~~---~~--~~~~~~~a~~~L~~L~---~~--~---~~~------~~i--~~~~~i~~Lv~ 226 (315)
+.....+ ...+++++..+.. .+ +.+........+..|+ .. + ++. ..+ .....++.+..
T Consensus 620 ~~~~~~~-~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 698 (971)
T 2x1g_F 620 EEIPKYL-DIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKR 698 (971)
T ss_dssp THHHHHH-HHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHH
Confidence 4443333 2344455444321 11 2212233333333332 11 0 000 001 11234666666
Q ss_pred HhhcCCCCChhHHHHHHHHHHHHhcc
Q 021242 227 LLDLGTGSGHRVKENAVSALLNLVNF 252 (315)
Q Consensus 227 ll~~~~~~~~~~~~~a~~~L~~l~~~ 252 (315)
++... ..+..+.+.++.++..++..
T Consensus 699 ~l~~~-~~~~~v~e~~~~~~~~~~~~ 723 (971)
T 2x1g_F 699 IAEMW-VEEIDVLEAACSAMKHAITN 723 (971)
T ss_dssp HHHHT-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhc-cccHHHHHHHHHHHHHHHHh
Confidence 66542 13668888999998887653
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=91.59 E-value=8.9 Score=38.60 Aligned_cols=275 Identities=10% Similarity=0.017 Sum_probs=138.1
Q ss_pred hhHHHHHHHh---C--CCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc
Q 021242 6 RTVRSLVTKL---G--SVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR 80 (315)
Q Consensus 6 ~~i~~Lv~~L---~--~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~ 80 (315)
..++.+++.+ . .+++.+|..++++|..++..-..+...+ ..+++.|+..| + +.++..|+.++.+++..-+
T Consensus 501 ~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~ 575 (971)
T 2x1g_F 501 RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAINLLVRGL-N--SSMSAQATLGLKELCRDCQ 575 (971)
T ss_dssp CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHH
Confidence 3455555544 4 2478999999999998875322211111 13456666666 2 6789999999999985543
Q ss_pred hhhh-hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcC-C-CchhhhhhccccHHHHHHHhhcc--CC--ChHHH
Q 021242 81 DSLM-STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVV-D-SYRPIIGAKRDIIHSLIEIIKTR--NS--PLRSV 153 (315)
Q Consensus 81 ~~~i-~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~-~-~~~~~i~~~~g~i~~Lv~ll~~~--~~--~~~~~ 153 (315)
..+. .-...+..+..++..+. ...+.+.....++..++.. + +...... ..++++++..+..- .. +++..
T Consensus 576 ~~l~p~~~~ll~~l~~~l~~~~--~~~~~~~~~~~ai~~i~~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~~~~~~~~~ 651 (971)
T 2x1g_F 576 LQLKPYADPLLNACHASLNTGR--MKNSDSVRLMFSIGKLMSLLRPEEIPKYL--DIIVSPCFEELQAICQADSKTPAAR 651 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTT--SCHHHHHHHHHHHHHHHHTSCTTHHHHHH--HHHHHHHHHHHHHHHTC---CHHHH
T ss_pred HhccccHHHHHHHHHHHHcCCC--CChHHHHHHHHHHHHHHHhCCHHHHHHHH--HHHHHHHHHHHHHHHhcCCCChhhH
Confidence 3321 12345666667776521 2456777777888877642 2 2222211 23455555544310 11 22222
Q ss_pred H---HHHHHHHHhccC--C---Cc------HH--HHHhhCCcHHHHHHHhcC-CCcchHHHHHHHHHHHhcChhhHHHHH
Q 021242 154 K---DALKALFGIALY--P---LN------RY--QVIALGGVQPLFSLVVNG-GRAGIVEDASAVIAQIAGCEESVDEFK 216 (315)
Q Consensus 154 ~---~a~~aL~~Ls~~--~---~~------~~--~i~~~g~v~~L~~lL~~~-~~~~~~~~a~~~L~~L~~~~~~~~~i~ 216 (315)
. .++..|..+... + ++ .. .-+....++.+..++... .+..+.+.++++++.++..- ...+
T Consensus 652 ~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~--~~~~- 728 (971)
T 2x1g_F 652 IRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNL--RSSF- 728 (971)
T ss_dssp HHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH--HC---
T ss_pred HHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhh--hhhc-
Confidence 2 333344333221 1 00 00 112356778777777533 25578999999999875521 0111
Q ss_pred hcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHH--HHHHHHHHccCcHHHHHHHHhh-------CCHHHHHHH
Q 021242 217 KCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGER--AAEEVKEMAMQVADGIADVAQN-------GSAKGKTKA 287 (315)
Q Consensus 217 ~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~--~~~~i~~~~~g~~~~L~~ll~~-------~~~~~k~~A 287 (315)
...++.++..+..... .... ..+++++..++...+.+ ....+.+.-...+..+..++.. +.|++++..
T Consensus 729 -~p~l~~~~~~l~~~~~-~~~~-~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~ 805 (971)
T 2x1g_F 729 -QPMLQDLCLFIVASFQ-TRCC-APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETF 805 (971)
T ss_dssp -CTHHHHHHHHHHHHCC---CC-HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHH
T ss_pred -cccHHHHHHHHHHHHh-cCCc-hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHH
Confidence 1126666665543211 1111 24566666665532221 1112211001233444444443 367777777
Q ss_pred HHHHHHHh
Q 021242 288 VALLKILV 295 (315)
Q Consensus 288 ~~~L~~l~ 295 (315)
-.++..+-
T Consensus 806 f~ll~~~l 813 (971)
T 2x1g_F 806 FGCLTQII 813 (971)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655544
|
| >3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B* | Back alignment and structure |
|---|
Probab=91.55 E-value=3 Score=37.48 Aligned_cols=149 Identities=13% Similarity=0.178 Sum_probs=97.7
Q ss_pred ccccHHHHHHHhhcc---------CCChHHHHHHHHHHHHhccCCCcHHHHHh-hCCcHHHHHHHhcCCCcchHHHHHHH
Q 021242 132 KRDIIHSLIEIIKTR---------NSPLRSVKDALKALFGIALYPLNRYQVIA-LGGVQPLFSLVVNGGRAGIVEDASAV 201 (315)
Q Consensus 132 ~~g~i~~Lv~ll~~~---------~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~-~g~v~~L~~lL~~~~~~~~~~~a~~~ 201 (315)
.+| +..|+.+|... ..+......++++|..+.-+......++. ..++..+...|. .++..++..++.+
T Consensus 108 ~~G-l~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~-s~~~~~~~~aleL 185 (383)
T 3eg5_B 108 AEG-LASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMD-PAVPNMMIDAAKL 185 (383)
T ss_dssp HHH-HHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCC-TTSHHHHHHHHHH
T ss_pred Hcc-HHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 457 78888888521 12346667888999998877777777776 477888888884 4667788889999
Q ss_pred HHHHhcChh--h-HHHHHhc----------CCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCH-----HHHHHHHH
Q 021242 202 IAQIAGCEE--S-VDEFKKC----------CGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGE-----RAAEEVKE 263 (315)
Q Consensus 202 L~~L~~~~~--~-~~~i~~~----------~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~-----~~~~~i~~ 263 (315)
|..+|..+. | ...+.++ .-...++..+..+ .+...+-.++..+..+.....+ ..+.++.+
T Consensus 186 L~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~--~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~ 263 (383)
T 3eg5_B 186 LSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG--TSIALKVGCLQLINALITPAEELDFRVHIRSELMR 263 (383)
T ss_dssp HHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT--SCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHcc--CcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 999987543 3 5555432 1267778877753 3667776677766666654332 23455555
Q ss_pred HccCcHHHHHHHHhhCCHHHHHH
Q 021242 264 MAMQVADGIADVAQNGSAKGKTK 286 (315)
Q Consensus 264 ~~~g~~~~L~~ll~~~~~~~k~~ 286 (315)
.|..+.+-.+-..+++.+...
T Consensus 264 --~Gl~~il~~lr~~~~~~L~~Q 284 (383)
T 3eg5_B 264 --LGLHQVLQELREIENEDMKVQ 284 (383)
T ss_dssp --TTHHHHHHHHTTSCCHHHHHH
T ss_pred --CChHHHHHHHhcCCChhHHHH
Confidence 677776666544456655543
|
| >2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B | Back alignment and structure |
|---|
Probab=91.44 E-value=3 Score=37.57 Aligned_cols=149 Identities=13% Similarity=0.170 Sum_probs=97.5
Q ss_pred cccHHHHHHHhhcc-----C----CChHHHHHHHHHHHHhccCCCcHHHHHh-hCCcHHHHHHHhcCCCcchHHHHHHHH
Q 021242 133 RDIIHSLIEIIKTR-----N----SPLRSVKDALKALFGIALYPLNRYQVIA-LGGVQPLFSLVVNGGRAGIVEDASAVI 202 (315)
Q Consensus 133 ~g~i~~Lv~ll~~~-----~----~~~~~~~~a~~aL~~Ls~~~~~~~~i~~-~g~v~~L~~lL~~~~~~~~~~~a~~~L 202 (315)
+| +..|+.+|... . .+......++++|..+.-+......++. .+++..+...|. .++..++..++.+|
T Consensus 47 ~G-l~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~-s~~~~~r~~vleLL 124 (386)
T 2bnx_A 47 EG-LASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMD-PAVPNMMIDAAKLL 124 (386)
T ss_dssp HH-HHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCC-TTSHHHHHHHHHHH
T ss_pred hH-HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhC-CCCchHHHHHHHHH
Confidence 56 77788777531 0 1345667888999998877777777665 477888888874 45667777888899
Q ss_pred HHHhcChh--h-HHHHHhc--------C--CHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCH-----HHHHHHHHH
Q 021242 203 AQIAGCEE--S-VDEFKKC--------C--GIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGE-----RAAEEVKEM 264 (315)
Q Consensus 203 ~~L~~~~~--~-~~~i~~~--------~--~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~-----~~~~~i~~~ 264 (315)
..+|..+. | ...+.++ + -...++..+..+ .+...+-.++..+..+.....+ ..+.++..
T Consensus 125 ~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~--~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~- 201 (386)
T 2bnx_A 125 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG--TSIALKVGCLQLINALITPAEELDFRVHIRSELMR- 201 (386)
T ss_dssp HHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTT--SCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH-
T ss_pred HHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcC--ChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-
Confidence 98888643 6 5544331 1 256788888753 3667777777777777664433 23456655
Q ss_pred ccCcHHHHHHHHhhCCHHHHHHH
Q 021242 265 AMQVADGIADVAQNGSAKGKTKA 287 (315)
Q Consensus 265 ~~g~~~~L~~ll~~~~~~~k~~A 287 (315)
.|..+.|-.+-..+++.+...-
T Consensus 202 -~GL~~il~~Lr~~~~~~L~~Qi 223 (386)
T 2bnx_A 202 -LGLHQVLQELREIENEDMKVQL 223 (386)
T ss_dssp -TTHHHHHHHHTTCCCHHHHHHH
T ss_pred -CChHHHHHHHhccCChhHHHHH
Confidence 6776666656555677665543
|
| >3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A* | Back alignment and structure |
|---|
Probab=91.39 E-value=4.4 Score=35.95 Aligned_cols=113 Identities=14% Similarity=0.164 Sum_probs=84.6
Q ss_pred HHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHHhcCCCCCCHHH
Q 021242 29 ELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAA 108 (315)
Q Consensus 29 ~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~~ 108 (315)
.|.++.-++....+-+++.+++..+...+...+.++.+.+...|...+....--..--.+.+|.+++.+.-+ +.+++
T Consensus 265 DLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L~e~LPFi~~~i~~h---~eDdv 341 (619)
T 3c2g_A 265 DLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPLENILPFLLRLIEIH---PDDEV 341 (619)
T ss_dssp HHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCCTTHHHHHHHHHHHC---CCHHH
T ss_pred HHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccccccchHHHHHhccC---CCcce
Confidence 344556677777889999999999999999999999999999998887544311222345789999999743 78899
Q ss_pred HHHHHHHHHHhhcCCC-chhhhhhccccHHHHHHHhhc
Q 021242 109 VQSSAATLHSLLVVDS-YRPIIGAKRDIIHSLIEIIKT 145 (315)
Q Consensus 109 ~~~a~~~L~~Ls~~~~-~~~~i~~~~g~i~~Lv~ll~~ 145 (315)
.-...+.|.|...+.. .+..-.. .++|+.|-..+..
T Consensus 342 vYSGTGFLSNVVAHKq~VKelAI~-~nAI~LLh~~I~k 378 (619)
T 3c2g_A 342 IYSGTGFLSNVVAHKQHVKDIAIR-SNAIFLLHTIISK 378 (619)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHH-TTHHHHHHHHHHT
T ss_pred EEecchHHHHHHhcccchHHHHhc-cCcHHHHHHHHhh
Confidence 9999999999876554 3443333 3669999988864
|
| >3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B* | Back alignment and structure |
|---|
Probab=89.30 E-value=9.7 Score=34.11 Aligned_cols=171 Identities=13% Similarity=0.125 Sum_probs=103.7
Q ss_pred HHHHHhCCCC-HHHHHHHHHHHHHHhccCchhh-HHHHhCCCHHHHHHHHcC-----------CCHHHHHHHHHHHHhcC
Q 021242 10 SLVTKLGSVS-EQTRAEALAELRLLSKHDAEIR-PMISEAGSIPYLAEILYS-----------SSHAFQENAAATLLNLS 76 (315)
Q Consensus 10 ~Lv~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~-~~i~~~g~i~~Lv~lL~~-----------~~~~~~~~a~~~L~~la 76 (315)
..|+.|.++. .+...+.+..|+.-...++..+ +.+. .+|+..|+..|.. .+...+..++.+|..+-
T Consensus 70 ~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm 148 (383)
T 3eg5_B 70 MYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM 148 (383)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh
Confidence 3556666553 2323345666665544444443 5565 7789999999842 23467788888998887
Q ss_pred cccc--hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCC--c-hhhh----------hhccccHHHHHH
Q 021242 77 ITSR--DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDS--Y-RPII----------GAKRDIIHSLIE 141 (315)
Q Consensus 77 ~~~~--~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~--~-~~~i----------~~~~g~i~~Lv~ 141 (315)
.+.. ..++..+.++..|...|.+ ..+.++..+...|.-++..++ + ...+ ++..- +..++.
T Consensus 149 N~~~G~~~vl~~~~~i~~l~~~L~s----~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~R-F~~lv~ 223 (383)
T 3eg5_B 149 NNKFGIKTMLETEEGILLLVRAMDP----AVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVER-FQPLLD 223 (383)
T ss_dssp SSHHHHHHHHTCSSHHHHHHHTCCT----TSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCT-THHHHH
T ss_pred cchhhHHHHHcChHHHHHHHHHhCC----CchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCc-HHHHHH
Confidence 6643 4566678889999998886 678889889999988886543 3 2211 22222 567788
Q ss_pred HhhccCCChHHHHHHHHHHHHhccCCCc-------HHHHHhhCCcHHHHHHHhc
Q 021242 142 IIKTRNSPLRSVKDALKALFGIALYPLN-------RYQVIALGGVQPLFSLVVN 188 (315)
Q Consensus 142 ll~~~~~~~~~~~~a~~aL~~Ls~~~~~-------~~~i~~~g~v~~L~~lL~~ 188 (315)
.++. ..+.+.+..++..+-.+...++. |..+...|..+ +++-++.
T Consensus 224 ~L~~-~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~-il~~lr~ 275 (383)
T 3eg5_B 224 GLKS-GTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQ-VLQELRE 275 (383)
T ss_dssp TTST-TSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHH-HHHHHTT
T ss_pred HHHc-cCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHH-HHHHHhc
Confidence 7773 24556655555444444444432 23344455555 4444653
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=88.80 E-value=21 Score=35.77 Aligned_cols=222 Identities=12% Similarity=0.029 Sum_probs=121.0
Q ss_pred cCCCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcC-CCchhhhhhccccH
Q 021242 58 YSSSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVV-DSYRPIIGAKRDII 136 (315)
Q Consensus 58 ~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~~g~i 136 (315)
.+.+...++.++.++..++..-... ....++.++..+..-. .+++.++..+++++..++.. ......+ ..++
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~---~~~~l~~l~~~l~~l~-~~~~~vr~~~~~~l~~~~~~l~~~~~~l---~~vl 531 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVN---YSDVVPGLIGLIPRIS-ISNVQLADTVMFTIGALSEWLADHPVMI---NSVL 531 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSS---CCSHHHHHHHHGGGSC-CCSHHHHHHHHHHHHHTHHHHHHCHHHH---TTTH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCch---hhHHHHHHHHHHHhCC-CCcHHHHHHHHHHHHHHHHHHHhCHHHH---HHHH
Confidence 3456678899999999988663211 1234555666553211 14678889999999998853 2222222 3568
Q ss_pred HHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHh--hCCcHHHHHHHhcC-CCcchHHHHHHHHHHHhcC-h-hh
Q 021242 137 HSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIA--LGGVQPLFSLVVNG-GRAGIVEDASAVIAQIAGC-E-ES 211 (315)
Q Consensus 137 ~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~--~g~v~~L~~lL~~~-~~~~~~~~a~~~L~~L~~~-~-~~ 211 (315)
+.|+..+. ++.++..|+.+|.+++..- +..+.. ...+..+..++.+. .+...+..++.++..++.. + +.
T Consensus 532 ~~l~~~l~----~~~V~~~A~~al~~l~~~~--~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~ 605 (963)
T 2x19_B 532 PLVLHALG----NPELSVSSVSTLKKICREC--KYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEE 605 (963)
T ss_dssp HHHHHHTT----CGGGHHHHHHHHHHHHHHT--GGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHhC----CchHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHH
Confidence 88888886 3788899999999999531 222221 13333445555421 1234566677777777542 2 33
Q ss_pred HHHHHhcCCHHHHHHHhhc--CCCCChhHHHH---HHHHHHHHhccCCH---------------------HHHHHHHHHc
Q 021242 212 VDEFKKCCGIGVLVDLLDL--GTGSGHRVKEN---AVSALLNLVNFGGE---------------------RAAEEVKEMA 265 (315)
Q Consensus 212 ~~~i~~~~~i~~Lv~ll~~--~~~~~~~~~~~---a~~~L~~l~~~~~~---------------------~~~~~i~~~~ 265 (315)
.....+ ..++.+...+.. ....++..+.. ...+|..+.+.-.. .....+.
T Consensus 606 ~~~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 681 (963)
T 2x19_B 606 ILKNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVL--- 681 (963)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHH---
T ss_pred HHHHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHH---
Confidence 333332 223333333321 00124444432 33333333321110 0111122
Q ss_pred cCcHHHHHHHHhh--CCHHHHHHHHHHHHHHhh
Q 021242 266 MQVADGIADVAQN--GSAKGKTKAVALLKILVD 296 (315)
Q Consensus 266 ~g~~~~L~~ll~~--~~~~~k~~A~~~L~~l~~ 296 (315)
....+.+..+++. .++.+.+.+..+++.+..
T Consensus 682 ~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~ 714 (963)
T 2x19_B 682 QQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVK 714 (963)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH
Confidence 3456666666664 478899989888887654
|
| >2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=88.43 E-value=9.6 Score=31.47 Aligned_cols=150 Identities=12% Similarity=0.115 Sum_probs=89.7
Q ss_pred HHHhCCC-CHHHHHHHHHHHHHHhccCchh-hHHHHhCCCHHHHHHHHcC----C-------CHHHHHHHHHHHHhcCcc
Q 021242 12 VTKLGSV-SEQTRAEALAELRLLSKHDAEI-RPMISEAGSIPYLAEILYS----S-------SHAFQENAAATLLNLSIT 78 (315)
Q Consensus 12 v~~L~~~-~~~~~~~a~~~L~~l~~~~~~~-~~~i~~~g~i~~Lv~lL~~----~-------~~~~~~~a~~~L~~la~~ 78 (315)
|+.|++. .++.-.+-+..|+.-...++.. -+.+ ..+|+..|+..|.. . +.+.+..++.+|..+..+
T Consensus 6 i~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~ 84 (233)
T 2f31_A 6 IQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN 84 (233)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCC
Confidence 4555544 2332234455555444444444 3455 57889999999853 1 345677888888888765
Q ss_pred cc--hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCC--c-hhhh----------hhccccHHHHHHHh
Q 021242 79 SR--DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDS--Y-RPII----------GAKRDIIHSLIEII 143 (315)
Q Consensus 79 ~~--~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~--~-~~~i----------~~~~g~i~~Lv~ll 143 (315)
.. ..++..++++..|...|.+ .++.++..+...|.-++..++ + ...+ .+.. -+..+++.+
T Consensus 85 ~~G~~~vl~~~~~i~~l~~~L~s----~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~-RF~~lv~~l 159 (233)
T 2f31_A 85 KFGIKTMLETEEGILLLVRAMDP----AVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVE-RFQPLLDGL 159 (233)
T ss_dssp HHHHHHHHTSSSHHHHHHTTCCT----TSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSC-TTHHHHHTT
T ss_pred hHHHHHHHcCcHHHHHHHHHhCC----CCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcc-hHHHHHHHH
Confidence 43 4566677788888888875 678888889888888886443 3 2222 1111 245677766
Q ss_pred hccCCChHHHHHHHHHHHHhccCCC
Q 021242 144 KTRNSPLRSVKDALKALFGIALYPL 168 (315)
Q Consensus 144 ~~~~~~~~~~~~a~~aL~~Ls~~~~ 168 (315)
.. .++.+.+..++..+-.+...++
T Consensus 160 ~~-~~~~e~~~~~m~lIN~li~~~~ 183 (233)
T 2f31_A 160 KS-GTSIALKVGCLQLINALITPAE 183 (233)
T ss_dssp ST-TSCHHHHHHHHHHHHHHHTTCC
T ss_pred hc-CChHHHHHHHHHHHHHHHCCCC
Confidence 63 2445555544444444444443
|
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A | Back alignment and structure |
|---|
Probab=86.16 E-value=21 Score=36.60 Aligned_cols=219 Identities=12% Similarity=0.070 Sum_probs=130.1
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHc-CCCHHHHHHHHHHHHhcCccc------
Q 021242 7 TVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILY-SSSHAFQENAAATLLNLSITS------ 79 (315)
Q Consensus 7 ~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~la~~~------ 79 (315)
.+..++..+-+++++.|..|-..|..+-+ +++... .+..+|. +.++.+|..|+.+|.+.....
T Consensus 29 ~Le~lv~~ly~p~~~~r~qA~~~L~q~q~-sp~aw~---------~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~ 98 (1073)
T 3gjx_A 29 LLDNVVNCLYHGEGAQQRMAQEVLTHLKE-HPDAWT---------RVDTILEFSQNMNTKYYGLQILENVIKTRWKILPR 98 (1073)
T ss_dssp HHHHHHHTTTCSSHHHHHHHHHHHHTSSC-CSCHHH---------HHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHc-CchHHH---------HHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCH
Confidence 34556666667788888888888888754 355433 3333343 457889999999997765432
Q ss_pred chhhhhhcCchHHHHHHHhcCC-CCCCHHHHHHHHHHHHHhhc--CCCchhhhhhccccHHHHHHHhhccCCChHHHHHH
Q 021242 80 RDSLMSTRGLLDAISHVLRHHS-TSTSSAAVQSSAATLHSLLV--VDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDA 156 (315)
Q Consensus 80 ~~~~i~~~~~i~~L~~lL~~~~-~~~~~~~~~~a~~~L~~Ls~--~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a 156 (315)
+.+...+...+..+.+.-..+. ...++.+....+.++..++. .++ . . ..+++-++..+.. ++......
T Consensus 99 e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~-~--W---p~fi~dLv~~~~~---~~~~~~~~ 169 (1073)
T 3gjx_A 99 NQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK-H--W---PTFISDIVGASRT---SESLCQNN 169 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT-T--C---TTHHHHHHHHHHH---CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChh-h--c---cHHHHHHHHHhCC---CHHHHHHH
Confidence 1122223334444444432210 00234555667777777774 222 1 1 3568888888762 45566777
Q ss_pred HHHHHHhccC--C-------Cc-----HHHHHhhCCcHHHHHHH----hcCCCcchHHHHHHHHHHHhcChhhHHHHHhc
Q 021242 157 LKALFGIALY--P-------LN-----RYQVIALGGVQPLFSLV----VNGGRAGIVEDASAVIAQIAGCEESVDEFKKC 218 (315)
Q Consensus 157 ~~aL~~Ls~~--~-------~~-----~~~i~~~g~v~~L~~lL----~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~ 218 (315)
++.|..|+.. + .. +..+.+ -++.++.++ .+..+..+...++.+|.....+-. ...+.+.
T Consensus 170 L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~--~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~-i~~i~~~ 246 (1073)
T 3gjx_A 170 MVILKLLSEEVFDFSSGQITQVKAKHLKDSMCN--EFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP-LGYIFET 246 (1073)
T ss_dssp HHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHH--TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC-THHHHSS
T ss_pred HHHHHHHHHHHHhcccccccHHHHHHHHHHHHH--HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC-HHHhccc
Confidence 8888777642 1 01 112222 255555544 333456677778899998888743 2346666
Q ss_pred CCHHHHH-HHhhcCCCCChhHHHHHHHHHHHHhcc
Q 021242 219 CGIGVLV-DLLDLGTGSGHRVKENAVSALLNLVNF 252 (315)
Q Consensus 219 ~~i~~Lv-~ll~~~~~~~~~~~~~a~~~L~~l~~~ 252 (315)
+.++.++ ..+. ++..+..|+.+|..+...
T Consensus 247 ~ll~~L~~~~L~-----~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 247 KLISTLIYKFLN-----VPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp SHHHHHHHHTSS-----SHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHhcC-----ChHHHHHHHHHHHHHHhc
Confidence 6677664 5554 678999999999998764
|
| >1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 | Back alignment and structure |
|---|
Probab=85.85 E-value=34 Score=35.05 Aligned_cols=137 Identities=11% Similarity=0.087 Sum_probs=74.1
Q ss_pred chHHHHHHHhcCCCCCCHHHHHHHHHHHHHhh----cCCCchh-hhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHh
Q 021242 89 LLDAISHVLRHHSTSTSSAAVQSSAATLHSLL----VVDSYRP-IIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGI 163 (315)
Q Consensus 89 ~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls----~~~~~~~-~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~L 163 (315)
.+..+..+++++....++.++..+.-++..|. .....+. .+. .-+...|...+. .++..-+..++++|.|+
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v--~~i~~~l~~~~~--~~~~~~~~~~LkaLGN~ 467 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELL--QPLHDLLSQSSD--RAKEEEIVLALKALGNA 467 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGT--HHHHHHHHHHHH--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHH--HHHHHHHHHHHh--cCChHHHHHHHHHhhcc
Confidence 45566666654211135556655555555554 2222221 111 122334444445 45667778899999997
Q ss_pred ccCCCcHHHHHhhCCcHHHHHHHhcC----CC--cchHHHHHHHHHHHhcC-hhhHHHHHhcCCHHHHHHHhhcCCCCCh
Q 021242 164 ALYPLNRYQVIALGGVQPLFSLVVNG----GR--AGIVEDASAVIAQIAGC-EESVDEFKKCCGIGVLVDLLDLGTGSGH 236 (315)
Q Consensus 164 s~~~~~~~~i~~~g~v~~L~~lL~~~----~~--~~~~~~a~~~L~~L~~~-~~~~~~i~~~~~i~~Lv~ll~~~~~~~~ 236 (315)
-. + ..++.+.+++... .+ ..++..|+.+|+.++.. +.. + -+.++++..+. ..+.
T Consensus 468 g~-p---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~---v-----~~il~~i~~n~-~e~~ 528 (1056)
T 1lsh_A 468 GQ-P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK---V-----QEIVLPIFLNV-AIKS 528 (1056)
T ss_dssp TC-G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH---H-----HHHHHHHHHCT-TSCH
T ss_pred CC-h---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH---H-----HHHHHHHhcCC-CCCh
Confidence 75 2 3466666666421 12 23556688888888642 111 1 24556666543 2477
Q ss_pred hHHHHHHHHHHH
Q 021242 237 RVKENAVSALLN 248 (315)
Q Consensus 237 ~~~~~a~~~L~~ 248 (315)
++|-.|+.+|..
T Consensus 529 EvRiaA~~~Lm~ 540 (1056)
T 1lsh_A 529 ELRIRSCIVFFE 540 (1056)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888777776655
|
| >1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B | Back alignment and structure |
|---|
Probab=85.83 E-value=2.2 Score=33.40 Aligned_cols=71 Identities=6% Similarity=0.082 Sum_probs=57.1
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccC-chhhHHHHhCCCHHHHHHHHcC-CCHHHHHHHHHHHHhc
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHD-AEIRPMISEAGSIPYLAEILYS-SSHAFQENAAATLLNL 75 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l 75 (315)
+..+..+...|+++++.++..|+..|-.+.++. +.-...+.....+..|+.++.. .++.+++.++..+..-
T Consensus 51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W 123 (163)
T 1x5b_A 51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEW 123 (163)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 456778888899999999999999999998873 4455677777888889998875 5678999998888443
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=85.32 E-value=3.5 Score=42.13 Aligned_cols=101 Identities=14% Similarity=0.089 Sum_probs=60.4
Q ss_pred CChHHHHHHHHHHHHhccCCCcH-HHHHhhCCcHHHHHHHhcCC--Cc--chHHHHHHHHHHHhcChhhHHHHHhcCCHH
Q 021242 148 SPLRSVKDALKALFGIALYPLNR-YQVIALGGVQPLFSLVVNGG--RA--GIVEDASAVIAQIAGCEESVDEFKKCCGIG 222 (315)
Q Consensus 148 ~~~~~~~~a~~aL~~Ls~~~~~~-~~i~~~g~v~~L~~lL~~~~--~~--~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~ 222 (315)
.+...++.++.+++.++...... ..-.-..+++.|+.++.+.. +. .++..+++++...+.+-.....+. ...+.
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L-~~vl~ 543 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL-RTVIL 543 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH-HHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH-HHHHH
Confidence 46788889999999998755432 22222456677787775211 12 233456677776655322212221 12244
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHHHHHhcc
Q 021242 223 VLVDLLDLGTGSGHRVKENAVSALLNLVNF 252 (315)
Q Consensus 223 ~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~ 252 (315)
.++..+.. .++++++.|++++..||..
T Consensus 544 ~L~~~l~~---~~~~v~~~A~~al~~l~~~ 570 (1023)
T 4hat_C 544 KLFEFMHE---THEGVQDMACDTFIKIVQK 570 (1023)
T ss_dssp HHHHHTTC---SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhc---CCHHHHHHHHHHHHHHHHH
Confidence 45555543 2678999999999999963
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=84.59 E-value=5.1 Score=40.96 Aligned_cols=141 Identities=11% Similarity=-0.013 Sum_probs=80.8
Q ss_pred CCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcC---CCHH--HHHHHHHHHHhcCcccc--hhhhhhcCch
Q 021242 18 VSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYS---SSHA--FQENAAATLLNLSITSR--DSLMSTRGLL 90 (315)
Q Consensus 18 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~---~~~~--~~~~a~~~L~~la~~~~--~~~i~~~~~i 90 (315)
.+...+..+++++..+++.-.+....-.-..+++.|+.++.. .++. ++..++++|+..+.--. ... =...+
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~--L~~vl 542 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF--LRTVI 542 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHH--HHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHH--HHHHH
Confidence 578999999999999986532222211223457778887753 1233 44567788877753211 111 11134
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhh-----hccccHHHHHHHhhc--cCCChHHHHHHHHHHHHh
Q 021242 91 DAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIG-----AKRDIIHSLIEIIKT--RNSPLRSVKDALKALFGI 163 (315)
Q Consensus 91 ~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~-----~~~g~i~~Lv~ll~~--~~~~~~~~~~a~~aL~~L 163 (315)
..|+..+.. .++.+...||+++.+|+.. ++..+. +...+++.++..+.. ..-++.....+..++..+
T Consensus 543 ~~L~~~l~~----~~~~v~~~A~~al~~l~~~--c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~v 616 (1023)
T 4hat_C 543 LKLFEFMHE----THEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGII 616 (1023)
T ss_dssp HHHHHHTTC----SCHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhc----CCHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 444444443 4678999999999999963 222221 111244544443321 023556667777777777
Q ss_pred ccC
Q 021242 164 ALY 166 (315)
Q Consensus 164 s~~ 166 (315)
...
T Consensus 617 i~~ 619 (1023)
T 4hat_C 617 ISE 619 (1023)
T ss_dssp HTT
T ss_pred HHh
Confidence 764
|
| >1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 | Back alignment and structure |
|---|
Probab=83.70 E-value=2.6 Score=32.35 Aligned_cols=73 Identities=15% Similarity=0.165 Sum_probs=58.9
Q ss_pred hhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccC-chhhHHHHhCCCHHHHHHHHcC------CCHHHHHHHHHHHHhcC
Q 021242 4 KRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHD-AEIRPMISEAGSIPYLAEILYS------SSHAFQENAAATLLNLS 76 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~~------~~~~~~~~a~~~L~~la 76 (315)
-+..+..+...|+++++.++..|+..|-.+.++. +.-...+....++..|++++.. .++.+++.++..+..-+
T Consensus 36 ~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 36 PTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 3566778888999999999999999999999873 4456777788889999999863 36789999988885443
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=83.06 E-value=20 Score=33.09 Aligned_cols=71 Identities=14% Similarity=0.144 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHHHHhh-cCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHH
Q 021242 104 TSSAAVQSSAATLHSLL-VVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPL 182 (315)
Q Consensus 104 ~~~~~~~~a~~~L~~Ls-~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L 182 (315)
++...+..|+..|...- .+++. .+ .+|..++++++ +++..++..|.+.|..+|.+ ++..++ +..|
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~l----~~--~Ai~a~lDLcE--Ded~~IR~qaik~Lp~~ck~-~~i~ki-----aDvL 105 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPEL----AD--SAINAQLDLCE--DEDVSIRRQAIKELPQFATG-ENLPRV-----ADIL 105 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGGG----HH--HHHHHHHHHHT--CSSHHHHHHHHHHGGGGCCT-TCHHHH-----HHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhh----HH--HHHHHHHHHHh--cccHHHHHHHHHhhHHHhhh-hhhhhH-----HHHH
Confidence 57888999998888765 45552 22 23899999999 67999999999999999998 665555 5678
Q ss_pred HHHHhc
Q 021242 183 FSLVVN 188 (315)
Q Consensus 183 ~~lL~~ 188 (315)
.++|..
T Consensus 106 ~QlLqt 111 (507)
T 3u0r_A 106 TQLLQT 111 (507)
T ss_dssp HHHTTC
T ss_pred HHHHhc
Confidence 899964
|
| >1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* | Back alignment and structure |
|---|
Probab=82.26 E-value=3 Score=32.89 Aligned_cols=72 Identities=18% Similarity=0.158 Sum_probs=57.9
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccC-chhhHHHHhCCCHHHHHHHHcC------CCHHHHHHHHHHHHhcC
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHD-AEIRPMISEAGSIPYLAEILYS------SSHAFQENAAATLLNLS 76 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~~------~~~~~~~~a~~~L~~la 76 (315)
+..+..|...|+++++.++..|+..|-.+.++. ..-...+.....+..|+.++.. .++.+++.++..+..-+
T Consensus 49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 456778888999999999999999999999874 3456677788889999999963 35789999999885443
|
| >2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B | Back alignment and structure |
|---|
Probab=82.03 E-value=28 Score=31.13 Aligned_cols=176 Identities=13% Similarity=0.134 Sum_probs=101.9
Q ss_pred HHHHhCCCC-HHHHHHHHHHHHHHhccCchhh-HHHHhCCCHHHHHHHHcC-------C----CHHHHHHHHHHHHhcCc
Q 021242 11 LVTKLGSVS-EQTRAEALAELRLLSKHDAEIR-PMISEAGSIPYLAEILYS-------S----SHAFQENAAATLLNLSI 77 (315)
Q Consensus 11 Lv~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~-~~i~~~g~i~~Lv~lL~~-------~----~~~~~~~a~~~L~~la~ 77 (315)
.|+.|.+.. ..--.+-+..|+.....++..+ +.+. .+|+..|+..|.. . +...+..++.+|..+..
T Consensus 9 yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN 87 (386)
T 2bnx_A 9 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN 87 (386)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC
Confidence 345555543 2222234555554444444443 4554 6789999988842 1 34567888889988876
Q ss_pred ccc--hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCC--c-hhhh----------hhccccHHHHHHH
Q 021242 78 TSR--DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDS--Y-RPII----------GAKRDIIHSLIEI 142 (315)
Q Consensus 78 ~~~--~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~--~-~~~i----------~~~~g~i~~Lv~l 142 (315)
+.. ..++..+.++..|...|.+ .++.++..+...|.-++..++ + ...+ .+. .-+..+|+.
T Consensus 88 ~~~Gl~~vl~~~~~i~~l~~sL~s----~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~-~RF~~lv~~ 162 (386)
T 2bnx_A 88 NKFGIKTMLETEEGILLLVRAMDP----AVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEV-ERFQPLLDG 162 (386)
T ss_dssp SHHHHHHHHHSSSHHHHHHHTCCT----TSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTS-CTTHHHHHH
T ss_pred CHHHHHHHHcCcHHHHHHHHHhCC----CCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCch-hhHHHHHHH
Confidence 642 4566677889888888875 678888888888888876443 3 2111 121 225568887
Q ss_pred hhccCCChHHHHHHHHHHHHhccCCCc-------HHHHHhhCCcHHHHHHHhcCCCcch
Q 021242 143 IKTRNSPLRSVKDALKALFGIALYPLN-------RYQVIALGGVQPLFSLVVNGGRAGI 194 (315)
Q Consensus 143 l~~~~~~~~~~~~a~~aL~~Ls~~~~~-------~~~i~~~g~v~~L~~lL~~~~~~~~ 194 (315)
+.. ..+.+.+..++..+-.+...++. |..+...|..+ +++-|+...++.+
T Consensus 163 l~~-~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~-il~~Lr~~~~~~L 219 (386)
T 2bnx_A 163 LKS-GTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQ-VLQELREIENEDM 219 (386)
T ss_dssp TST-TSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHH-HHHHHTTCCCHHH
T ss_pred HHc-CChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHH-HHHHHhccCChhH
Confidence 764 34556655555555455554442 33444445544 5556653334433
|
| >1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A | Back alignment and structure |
|---|
Probab=81.82 E-value=3.6 Score=31.29 Aligned_cols=75 Identities=13% Similarity=0.131 Sum_probs=54.4
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCC--------HHHHHHHHHHHH
Q 021242 221 IGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGS--------AKGKTKAVALLK 292 (315)
Q Consensus 221 i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~--------~~~k~~A~~~L~ 292 (315)
+..|.+-|... ++.++..|+.+|..||..++++....+.+ ....|+.+...---++ ..||..|..++.
T Consensus 51 m~~L~kRL~~k---~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~-~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ 126 (140)
T 1vdy_A 51 SEFILKRLDNK---SPIVKQKALRLIKYAVGKSGSEFRREMQR-NSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETIS 126 (140)
T ss_dssp HHHHHHHHTSS---SHHHHHHHHHHHHHHTTTSCHHHHHHHHH-TTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC---CcceeehHHHHHHHHHHhCCHHHHHHHHH-hHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHH
Confidence 35666677765 78899999999999999998888778776 3444555543322212 589999999999
Q ss_pred HHhhCCC
Q 021242 293 ILVDDGN 299 (315)
Q Consensus 293 ~l~~~~~ 299 (315)
.|.++..
T Consensus 127 ll~d~~~ 133 (140)
T 1vdy_A 127 AIFSEEN 133 (140)
T ss_dssp HHTCCSS
T ss_pred HHhCcCC
Confidence 9977543
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=81.78 E-value=47 Score=33.63 Aligned_cols=262 Identities=14% Similarity=0.084 Sum_probs=138.5
Q ss_pred HHHHHH-HhCC-CCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCC---CHHHHHHHHHHHHhcCcc--cc
Q 021242 8 VRSLVT-KLGS-VSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSS---SHAFQENAAATLLNLSIT--SR 80 (315)
Q Consensus 8 i~~Lv~-~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~---~~~~~~~a~~~L~~la~~--~~ 80 (315)
|...++ .+.. ++++.|.+|-..|..+-+. ++ +......+|.+. ++.++..|+.+|.+.-.. .+
T Consensus 8 v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~s-p~---------aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e 77 (980)
T 3ibv_A 8 VENAVEAALDPSVGPIIKQQATDFIGSLRSS-ST---------GWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNE 77 (980)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHHHHHHHS-TT---------HHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHcC-hh---------HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChh
Confidence 444442 3333 3789999999999888654 44 345556666543 678999999988654331 11
Q ss_pred hhhhhhcCchHHHHHHHhcCC-CCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCCh-HHHHHHHH
Q 021242 81 DSLMSTRGLLDAISHVLRHHS-TSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPL-RSVKDALK 158 (315)
Q Consensus 81 ~~~i~~~~~i~~L~~lL~~~~-~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~-~~~~~a~~ 158 (315)
.......+.-..|+.++.... ..+..-++...+.+|..+...... . .=..+++-|+.++... ++ ......++
T Consensus 78 ~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p-~---~Wp~~i~~l~~~~~~~--~~~~~~~~~Lr 151 (980)
T 3ibv_A 78 SNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYP-S---NWNDFFASLQGVIAAS--SQSEFSNFYLK 151 (980)
T ss_dssp TSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTT-T---TCTTHHHHHHHHHHHH--CCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCc-c---cCchHHHHHHHHhcCC--ChhHHHHHHHH
Confidence 000001122333444444211 013445667777777777742210 0 1135688888888742 33 45566777
Q ss_pred HHHHhccC---C---C-----c-----HHHHHhh---CCcHHHHHHHhc---CCCcchHHHHHHHHHHHhcChhhHHHHH
Q 021242 159 ALFGIALY---P---L-----N-----RYQVIAL---GGVQPLFSLVVN---GGRAGIVEDASAVIAQIAGCEESVDEFK 216 (315)
Q Consensus 159 aL~~Ls~~---~---~-----~-----~~~i~~~---g~v~~L~~lL~~---~~~~~~~~~a~~~L~~L~~~~~~~~~i~ 216 (315)
+|..|+.. . . . +..+.+. -+++....+|.+ ..+..+...++.+|.....+-. ...+.
T Consensus 152 iL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~-~~~i~ 230 (980)
T 3ibv_A 152 VLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN-INLIV 230 (980)
T ss_dssp HHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC-HHHHH
T ss_pred HHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC-HHhhh
Confidence 77754421 1 1 1 1222221 113334444432 2355667777777777665432 33455
Q ss_pred hcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCH-HHHHHHHHHccCcHHHHHHHHh-hCCHHHHHHHHHHHH
Q 021242 217 KCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGE-RAAEEVKEMAMQVADGIADVAQ-NGSAKGKTKAVALLK 292 (315)
Q Consensus 217 ~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~i~~~~~g~~~~L~~ll~-~~~~~~k~~A~~~L~ 292 (315)
+...++.+.+++. ++..++.|+.+|..+.....+ ..+..+++ ..+..+.+-.+.. .+|++..+.-++++.
T Consensus 231 ~~~ll~~l~~~L~-----~~~~r~~A~ecL~ei~~k~~~~~~k~~li~-~l~L~~~~~~l~~~~~D~d~~~~la~L~~ 302 (980)
T 3ibv_A 231 NEPCMNLLYSFLQ-----IEELRCAACETMTEIVNKKMKPLEKLNLLN-ILNLNLFFSKSQEQSTDPNFDEHVAKLIN 302 (980)
T ss_dssp CHHHHHHHHHHTT-----SHHHHHHHHHHHHHHHHSCCCHHHHHHHHH-HHHHHHHHCC-----CCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHcC-----ChHHHHHHHHHHHHHHHcCCChhhHHHHHH-HHhHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 5556788887776 578999999999998865432 33344443 1111122222222 356666555555443
|
| >3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 | Back alignment and structure |
|---|
Probab=81.26 E-value=6.2 Score=29.89 Aligned_cols=71 Identities=21% Similarity=0.165 Sum_probs=55.0
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhh
Q 021242 221 IGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 221 i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
+..+.+-|.++ ++.++..|+.+|..+.+..+.....++.. ..++..|..++...++.||+++..+++..+.
T Consensus 44 ~rai~Krl~~~---n~~~ql~AL~LLe~~vkNcG~~f~~evas--~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 44 LRSIMRRVNHK---DPHVAMQALTLLGACVSNCGKIFHLEVCS--RDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHTCS---SHHHHHHHHHHHHHHHHHSCHHHHHHHSS--HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC---ChHHHHHHHHHHHHHHHhcCHHHHHHHhh--HHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 56666677776 78889999998888877665555556654 5678888888888899999999998877654
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=80.77 E-value=47 Score=33.75 Aligned_cols=212 Identities=14% Similarity=0.136 Sum_probs=115.5
Q ss_pred cCCCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCC------Cchhhhhh
Q 021242 58 YSSSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVD------SYRPIIGA 131 (315)
Q Consensus 58 ~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~------~~~~~i~~ 131 (315)
.+++...|..|-..|..+. ..++++..+..+|.+ +.+++++..|+.+|.+..... +.+..+.+
T Consensus 26 ~~p~~~~r~~Ae~~L~~~~--------~~p~~~~~l~~iL~~---s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~ 94 (1049)
T 3m1i_C 26 YQGSGVQQKQAQEILTKFQ--------DNPDAWQKADQILQF---STNPQSKFIALSILDKLITRKWKLLPNDHRIGIRN 94 (1049)
T ss_dssp HHCCHHHHHHHHHHHHHHH--------HSTTGGGGHHHHHHH---CSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHHHH--------hCchHHHHHHHHHhh---CCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHH
Confidence 3455666777777775542 345677778888865 257889999999999876422 12333332
Q ss_pred ccccHHHHHHHhhccC---CChHHHHHHHHHHHHhccC--CCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHh
Q 021242 132 KRDIIHSLIEIIKTRN---SPLRSVKDALKALFGIALY--PLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIA 206 (315)
Q Consensus 132 ~~g~i~~Lv~ll~~~~---~~~~~~~~a~~aL~~Ls~~--~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~ 206 (315)
.++..+...-..+. .++.++...+.++..++.. |+.= .+.++.++..+. ++...++.++.+|..|+
T Consensus 95 --~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~W-----p~ll~~L~~~~~--~~~~~~~~~l~~L~~l~ 165 (1049)
T 3m1i_C 95 --FVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNW-----PEFIPELIGSSS--SSVNVCENNMIVLKLLS 165 (1049)
T ss_dssp --HHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTC-----TTHHHHHHHHHT--TCHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccc-----hHHHHHHHHHHc--cChHHHHHHHHHHHHHH
Confidence 22333332221000 0245566666777776652 3110 245667777774 34445677788887776
Q ss_pred cC-h--------hhH-----HHHHhcC--CHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHH
Q 021242 207 GC-E--------ESV-----DEFKKCC--GIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVAD 270 (315)
Q Consensus 207 ~~-~--------~~~-----~~i~~~~--~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~ 270 (315)
.. . ..| ..+.+.- .+..+...+... .+..++..++.++......-.. ..+.. ...++
T Consensus 166 eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~--~~~~~~~~aL~~l~~~l~wi~~---~~~~~--~~ll~ 238 (1049)
T 3m1i_C 166 EEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQG--SSSSLIVATLESLLRYLHWIPY---RYIYE--TNILE 238 (1049)
T ss_dssp HHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTTTSCT---HHHHS--SSHHH
T ss_pred HHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHhhCCH---HHHhh--hhHHH
Confidence 31 0 011 2232210 123334445443 2567888888888776543221 23443 55666
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHHhhC
Q 021242 271 GIADVAQNGSAKGKTKAVALLKILVDD 297 (315)
Q Consensus 271 ~L~~ll~~~~~~~k~~A~~~L~~l~~~ 297 (315)
.+...+. .++.++..|..+|..+-..
T Consensus 239 ~l~~~~l-~~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 239 LLSTKFM-TSPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp HHHTHHH-HSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhC-CCHhHHHHHHHHHHHHHhC
Confidence 6552222 2677787787777666543
|
| >3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 | Back alignment and structure |
|---|
Probab=80.73 E-value=4.1 Score=30.93 Aligned_cols=72 Identities=11% Similarity=0.138 Sum_probs=56.7
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCc-hhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDA-EIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLS 76 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la 76 (315)
+..+..+...|++++|.++..|+..|-.+.++.. .-...+.....+..|+.+++..++.+++..+..+..-+
T Consensus 41 k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 41 KDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 4567778888999999999999999988887642 23456666777888888887788899999999885544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 315 | ||||
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 5e-09 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 1e-04 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 6e-08 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 3e-07 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 4e-07 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 8e-07 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 1e-05 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 3e-05 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 2e-07 | |
| d1wa5b_ | 503 | a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S | 2e-04 |
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.8 bits (130), Expect = 5e-09
Identities = 23/105 (21%), Positives = 41/105 (39%), Gaps = 3/105 (2%)
Query: 7 TVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQE 66
T+ V L S E+ +A ++ D + + + G I L ++L S + Q+
Sbjct: 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62
Query: 67 NAAATLLNLSITS---RDSLMSTRGLLDAISHVLRHHSTSTSSAA 108
AA L NL S + G+ +A+S + R +
Sbjct: 63 AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQL 107
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.4 bits (95), Expect = 1e-04
Identities = 24/214 (11%), Positives = 64/214 (29%), Gaps = 7/214 (3%)
Query: 4 KRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSS-- 61
T +S + S++ + + + + + +I ++ S
Sbjct: 239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKD 298
Query: 62 --HAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSL 119
A L + GL + + S +S V+S A+ L ++
Sbjct: 299 ATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNM 358
Query: 120 LVVDSYRPIIGAK--RDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL-YPLNRYQVIAL 176
++G + ++ L ++ + A + + P Q +
Sbjct: 359 SRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSS 418
Query: 177 GGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEE 210
+ + +L + E A +++ + +E
Sbjct: 419 SMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.4 bits (121), Expect = 6e-08
Identities = 44/244 (18%), Positives = 91/244 (37%), Gaps = 15/244 (6%)
Query: 26 ALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSIT--SRDSL 83
A+ L + + DAE+ +IP L ++L AA + LS SR ++
Sbjct: 1 AVVNL-INYQDDAELA-----TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAI 54
Query: 84 MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEII 143
M + ++ AI +++ + + +A TLH+L I K I +L++++
Sbjct: 55 MRSPQMVSAIVRTMQN---TNDVETARCTAGTLHNLSHHREGLLAI-FKSGGIPALVKML 110
Query: 144 KTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIA 203
+ + A+ L + L+ + L G ++N + + +
Sbjct: 111 GSPVDSVL--FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 168
Query: 204 QIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVK 262
+A +ES G LV+++ T + V +L++ + E
Sbjct: 169 ILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGG 228
Query: 263 EMAM 266
A+
Sbjct: 229 MQAL 232
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.5 bits (116), Expect = 3e-07
Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 3 VKRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSH 62
T+ V L S E + A L L+ D E I G+ L E+L+S +
Sbjct: 457 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELA-QDKEAAEAIEAEGATAPLTELLHSRNE 515
Query: 63 AFQENAAATLLNLS 76
AAA L +S
Sbjct: 516 GVATYAAAVLFRMS 529
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.1 bits (115), Expect = 4e-07
Identities = 26/166 (15%), Positives = 54/166 (32%), Gaps = 26/166 (15%)
Query: 41 RPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHH 100
+ E G+IP L ++L + Q + +
Sbjct: 390 HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEI-------------- 435
Query: 101 STSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKAL 160
V+ LH L R +I + I ++++ + ++ + A L
Sbjct: 436 --------VEGCTGALHILARDVHNRIVI-RGLNTIPLFVQLLYSPIENIQ--RVAAGVL 484
Query: 161 FGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIA 206
+A + A G PL L ++ G+ A+AV+ +++
Sbjct: 485 CELAQDKEAAEAIEAEGATAPLTEL-LHSRNEGVATYAAAVLFRMS 529
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.0 bits (112), Expect = 8e-07
Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 6/98 (6%)
Query: 153 VKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESV 212
V+ AL +A NR + L + L+ + I A+ V+ ++A +E+
Sbjct: 436 VEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYS-PIENIQRVAAGVLCELAQDKEAA 494
Query: 213 DEFKKCCGIGVLVDLLDLGTGSGH-RVKENAVSALLNL 249
+ + L +LL S + V A + L +
Sbjct: 495 EAIEAEGATAPLTELL----HSRNEGVATYAAAVLFRM 528
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.1 bits (102), Expect = 1e-05
Identities = 23/105 (21%), Positives = 41/105 (39%), Gaps = 6/105 (5%)
Query: 16 GSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNL 75
G E+ L +L++ D R +I +IP ++LYS Q AA L L
Sbjct: 429 GVRMEEIVEGCTGALHILAR-DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL 487
Query: 76 SITSRDS-LMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSL 119
+ + + G ++ +L + ++ A AA L +
Sbjct: 488 AQDKEAAEAIEAEGATAPLTELLHSRNEGVATYA----AAVLFRM 528
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.0 bits (99), Expect = 3e-05
Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 4/98 (4%)
Query: 8 VRSLVTKLG-SVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQE 66
V ++V + + +T L LS H E I ++G IP L ++L S +
Sbjct: 61 VSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLF 119
Query: 67 NAAATLLNLSITSRDSLMSTR--GLLDAISHVLRHHST 102
A TL NL + + M+ R G L + +L +
Sbjct: 120 YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV 157
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 49.4 bits (116), Expect = 2e-07
Identities = 30/190 (15%), Positives = 64/190 (33%), Gaps = 4/190 (2%)
Query: 1 MEVKRRTVRSLVTKLGSVSEQTRAEALAELR-LLSKHDAEIRPMISEAGSIPYLAEILYS 59
+V +V + S + +++ +A R LLS+ I AG IP L
Sbjct: 8 QGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK 67
Query: 60 SSHAF-QENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHS 118
+ + Q +A L N++ S S + + S + + + L +
Sbjct: 68 TDCSPIQFESAWALTNIA--SGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGN 125
Query: 119 LLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGG 178
+ S + K I L+ ++ + + + ++ N+ L
Sbjct: 126 IAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDA 185
Query: 179 VQPLFSLVVN 188
V+ + +V
Sbjct: 186 VEQILPTLVR 195
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.9 bits (94), Expect = 2e-04
Identities = 29/219 (13%), Positives = 72/219 (32%), Gaps = 10/219 (4%)
Query: 7 TVRSLVTKLGSVSEQTRAEALAELR-LLSKHDAEIRPMISEAGSIPYLAEILYSSSHA-F 64
+ + +L S Q + A + R +LS+ ++ +AG +P L E + +
Sbjct: 77 ELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEML 136
Query: 65 QENAAATLLNLSITSRDS--LMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVV 122
Q AA L N++ + ++ + +L S A L ++
Sbjct: 137 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQA----IWALGNVAGD 192
Query: 123 DSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPL 182
+ + + + ++ + + L + A L + + + P
Sbjct: 193 STDYRDYVLQCNAMEPILGLFNSNKPSLI--RTATWTLSNLCRGKKPQPDWSVVSQALPT 250
Query: 183 FSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGI 221
+ ++ + DA I+ ++ + + I
Sbjct: 251 LAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRI 289
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 315 | |||
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.95 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.95 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.95 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.94 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.94 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 99.94 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.93 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.85 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 99.8 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.79 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 98.93 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 98.91 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 98.88 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 98.76 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 98.61 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 98.6 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 98.57 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 98.37 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.36 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 98.33 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 98.29 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 98.24 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 98.23 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 98.01 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.97 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 97.93 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 97.9 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 97.79 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.67 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.62 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 97.58 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.49 | |
| d1upka_ | 330 | Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | 96.41 | |
| d1upka_ | 330 | Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | 95.88 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 94.74 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 94.46 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 93.76 | |
| d2bnxa1 | 343 | Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) { | 91.82 | |
| d2bnxa1 | 343 | Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) { | 90.76 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 84.71 | |
| d1ujka_ | 145 | ADP-ribosylation factor binding protein Gga1 {Huma | 83.2 | |
| d1mhqa_ | 143 | ADP-ribosylation factor binding protein Gga2 {Huma | 80.61 |
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.95 E-value=6.5e-26 Score=208.10 Aligned_cols=282 Identities=16% Similarity=0.194 Sum_probs=231.5
Q ss_pred hhhHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc--h
Q 021242 5 RRTVRSLVTKLGSV-SEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR--D 81 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~--~ 81 (315)
-+.+|.|+++|+++ ++++|..|+++|.+++..+++.+..+++.|++|.|+.+|.+.++++++.|+++|.|++.+.+ +
T Consensus 55 ~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~ 134 (434)
T d1q1sc_ 55 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFR 134 (434)
T ss_dssp TTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHH
Confidence 46799999999755 67899999999999998888899999999999999999999999999999999999987653 3
Q ss_pred hhhhhcCchHHHHHHHhcC-------------------------------------------CCCCCHHHHHHHHHHHHH
Q 021242 82 SLMSTRGLLDAISHVLRHH-------------------------------------------STSTSSAAVQSSAATLHS 118 (315)
Q Consensus 82 ~~i~~~~~i~~L~~lL~~~-------------------------------------------~~~~~~~~~~~a~~~L~~ 118 (315)
..+.+.|+++.++.++..+ ...++++++..++++|.+
T Consensus 135 ~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~ 214 (434)
T d1q1sc_ 135 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISY 214 (434)
T ss_dssp HHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcc
Confidence 3344445544444333211 001466777889999999
Q ss_pred hhcCCCc-hhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCC-CcHHHHHhhCCcHHHHHHHhcCCCcchHH
Q 021242 119 LLVVDSY-RPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYP-LNRYQVIALGGVQPLFSLVVNGGRAGIVE 196 (315)
Q Consensus 119 Ls~~~~~-~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~g~v~~L~~lL~~~~~~~~~~ 196 (315)
|+..++. ...+.. .|+++.|+.++. .+++.++..|+++|.+++... +.+..+++.|+++.++.++. +++..++.
T Consensus 215 l~~~~~~~~~~~~~-~~~~~~Lv~ll~--~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~-~~~~~v~~ 290 (434)
T d1q1sc_ 215 LTDGPNERIEMVVK-KGVVPQLVKLLG--ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQK 290 (434)
T ss_dssp HTSSCHHHHHHHHT-TTCHHHHHHHHT--CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTT-CSSHHHHH
T ss_pred cchhhhhhHHHHhh-cccchhcccccc--cchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhc-ccchhhhH
Confidence 9875544 344444 466999999999 568999999999999999854 45678889999999999996 56778999
Q ss_pred HHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHH
Q 021242 197 DASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADV 275 (315)
Q Consensus 197 ~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~l 275 (315)
.++++|.+++. .++.+..+.+.|+++.++.++.++ +..++..++++|.+++.....+....+++ .|+++.|+.+
T Consensus 291 ~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~---~~~v~~~a~~~l~nl~~~~~~~~~~~l~~--~~~i~~L~~l 365 (434)
T d1q1sc_ 291 EATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA---DFKTQKEAAWAITNYTSGGTVEQIVYLVH--CGIIEPLMNL 365 (434)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSS---CHHHHHHHHHHHHHHHHHSCHHHHHHHHH--TTCHHHHHHH
T ss_pred HHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhcc---ChHHHHHHHHHHHHHHhcCCHHHHHHHHH--CCcHHHHHHH
Confidence 99999999987 466777788889999999999986 88999999999999998766566677888 8999999999
Q ss_pred HhhCCHHHHHHHHHHHHHHh
Q 021242 276 AQNGSAKGKTKAVALLKILV 295 (315)
Q Consensus 276 l~~~~~~~k~~A~~~L~~l~ 295 (315)
+++++++++..+.+.|..+-
T Consensus 366 l~~~d~~~~~~~l~~l~~ll 385 (434)
T d1q1sc_ 366 LSAKDTKIIQVILDAISNIF 385 (434)
T ss_dssp TTSSCHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHH
Confidence 99999999999988776664
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=2.3e-27 Score=224.32 Aligned_cols=278 Identities=16% Similarity=0.172 Sum_probs=236.6
Q ss_pred hhhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHh-CCCHHHHHHHHcC-CCHHHHHHHHHHHHhcCcccc
Q 021242 3 VKRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISE-AGSIPYLAEILYS-SSHAFQENAAATLLNLSITSR 80 (315)
Q Consensus 3 ~~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~la~~~~ 80 (315)
-.++.||.|+++|++.++.++..|+..+.+++.+ +..+..+.. .|+++.|+++|++ .++++++.|+.+|++++.+++
T Consensus 14 ~~~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~-~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~ 92 (529)
T d1jdha_ 14 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE 92 (529)
T ss_dssp ---CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTS-HHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-cHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCch
Confidence 3467899999999999999999999999999976 556666665 5789999999975 578899999999999998765
Q ss_pred -hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcC-CCchhhhhhccccHHHHHHHhhccCCChHHHHHHHH
Q 021242 81 -DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVV-DSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALK 158 (315)
Q Consensus 81 -~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~ 158 (315)
+..+.+.|+++.|+.+|++ ++++++..++++|.+|+.. +..+..+.+. |.++.|+.++. ++++.++..+++
T Consensus 93 ~~~~i~~~g~i~~Li~lL~~----~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~-g~i~~Lv~lL~--~~~~~~~~~a~~ 165 (529)
T d1jdha_ 93 GLLAIFKSGGIPALVKMLGS----PVDSVLFYAITTLHNLLLHQEGAKMAVRLA-GGLQKMVALLN--KTNVKFLAITTD 165 (529)
T ss_dssp HHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHHHHCTTHHHHHHHH-THHHHHHHGGG--CCCHHHHHHHHH
T ss_pred hHHHHHHCCCHHHHHHHhCC----CCHHHHHHHHHHHHHhhcccchhhhHHHhc-CCchHHHHHHH--ccChHHHHHHHH
Confidence 4556789999999999997 7889999999999999964 4456667665 55999999999 568999999999
Q ss_pred HHHHhccC-CCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChh
Q 021242 159 ALFGIALY-PLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHR 237 (315)
Q Consensus 159 aL~~Ls~~-~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~ 237 (315)
+|.+++.. ++.+..+...|+++.++.++.+.++..+...+++++.+++.+++++..+.+.|+++.|+.++..+ +..
T Consensus 166 ~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~---~~~ 242 (529)
T d1jdha_ 166 CLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP---SQR 242 (529)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSS---CHH
T ss_pred HHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhccc---chh
Confidence 99999975 45667778899999999999755556788899999999999999999999999999999999876 889
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhC
Q 021242 238 VKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDD 297 (315)
Q Consensus 238 ~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~ 297 (315)
++.++++++.+++..... .... .|+++.|+.++.++++.++..|..+|.++...
T Consensus 243 ~~~~a~~~l~~ls~~~~~----~~~~--~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~ 296 (529)
T d1jdha_ 243 LVQNCLWTLRNLSDAATK----QEGM--EGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 296 (529)
T ss_dssp HHHHHHHHHHHHHTTCTT----CSCC--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT
T ss_pred hhhhhhhHHHhccccccc----hhhh--hhcchhhhhhcccccHHHHHHHHHHHHhhccc
Confidence 999999999999764331 2222 57899999999999999999999999998743
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.8e-25 Score=210.01 Aligned_cols=281 Identities=16% Similarity=0.135 Sum_probs=239.4
Q ss_pred hhhhHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc--
Q 021242 4 KRRTVRSLVTKLGSV-SEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR-- 80 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~-- 80 (315)
+.+.+|.|+++|++. ++++|..|+++|.+++..++.....+.+.|++|.++.+|.+++.++++.|+++|+|++.+..
T Consensus 117 ~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~ 196 (503)
T d1wa5b_ 117 QAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 196 (503)
T ss_dssp HTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHH
Confidence 356789999999854 67899999999999998888888899999999999999999999999999999999998753
Q ss_pred hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHH
Q 021242 81 DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKAL 160 (315)
Q Consensus 81 ~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL 160 (315)
+..+...|+++.|+.++.+ ..++.+..++++|.+|+........+....+++|.|+.++. ..+++++..++++|
T Consensus 197 r~~l~~~~~~~~L~~ll~~----~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~--~~d~~~~~~~~~~l 270 (503)
T d1wa5b_ 197 RDYVLQCNAMEPILGLFNS----NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY--SMDTETLVDACWAI 270 (503)
T ss_dssp HHHHHHTTCHHHHHHGGGS----CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTT--CCCHHHHHHHHHHH
T ss_pred HHHHHhhcccccchhhccc----CCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHH
Confidence 4566799999999999986 67788999999999999755433222222466999999998 56899999999999
Q ss_pred HHhccCCC-cHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcC-hhhHHHHHhcCCHHHHHHHhhcCCCCChhH
Q 021242 161 FGIALYPL-NRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGC-EESVDEFKKCCGIGVLVDLLDLGTGSGHRV 238 (315)
Q Consensus 161 ~~Ls~~~~-~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~ 238 (315)
.+++.... ....+++.|+++.++.++. +++..+...++.+|.+++.. +.....+.+.|+++.+..+++++ ++.+
T Consensus 271 ~~l~~~~~~~~~~~~~~~~~~~l~~ll~-~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~---~~~i 346 (503)
T d1wa5b_ 271 SYLSDGPQEAIQAVIDVRIPKRLVELLS-HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP---KENI 346 (503)
T ss_dssp HHHHSSCHHHHHHHHHTTCHHHHHHGGG-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS---CHHH
T ss_pred HhhccCCchhhhhhhhhhhhhhhhhccc-CCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCC---CHHH
Confidence 99998654 4467888999999999996 56778899999999999875 55566677888899999999876 8899
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhC
Q 021242 239 KENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDD 297 (315)
Q Consensus 239 ~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~ 297 (315)
++.++++|.+++.++ +.....+++ .|+++.++.++.++++.++..|+++|.++...
T Consensus 347 ~~~~~~~l~nl~~~~-~~~~~~i~~--~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~ 402 (503)
T d1wa5b_ 347 KKEACWTISNITAGN-TEQIQAVID--ANLIPPLVKLLEVAEYKTKKEACWAISNASSG 402 (503)
T ss_dssp HHHHHHHHHHHTTSC-HHHHHHHHH--TTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcc-HHHHHHHHH--ccccchhHHhcccCChhHHHHHHHHHHHHHhc
Confidence 999999999998744 456677777 99999999999999999999999999988653
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.94 E-value=2.1e-25 Score=204.66 Aligned_cols=283 Identities=17% Similarity=0.187 Sum_probs=230.8
Q ss_pred hhhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCch-hhHHHHhCCCHHHHHHHHcC-CCHHHHHHHHHHHHhcCcccc
Q 021242 3 VKRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAE-IRPMISEAGSIPYLAEILYS-SSHAFQENAAATLLNLSITSR 80 (315)
Q Consensus 3 ~~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~-~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~la~~~~ 80 (315)
..+.+|+.+|+.|++++++.|..|+.+++++...+.. ....+++.|++|.|+++|++ .++.+|..|+++|.+++.+..
T Consensus 10 ~~~~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~ 89 (434)
T d1q1sc_ 10 TVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTS 89 (434)
T ss_dssp SSSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCH
T ss_pred hhhhhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCh
Confidence 4678899999999999999999999999998644332 35788999999999999965 467899999999999987753
Q ss_pred --hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCC-Cchhhhhhccc-----------------------
Q 021242 81 --DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVD-SYRPIIGAKRD----------------------- 134 (315)
Q Consensus 81 --~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~~g----------------------- 134 (315)
+..+.+.|+++.++.+|.+ +++++++.++++|.+++... +.+..+...++
T Consensus 90 ~~~~~i~~~~~i~~l~~~L~~----~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 165 (434)
T d1q1sc_ 90 EQTKAVVDGGAIPAFISLLAS----PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRN 165 (434)
T ss_dssp HHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHH
T ss_pred hhhhHhhhccchhhhhhcccc----CCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHH
Confidence 4556799999999999997 68899999999999998644 33433333222
Q ss_pred -----------------------cHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcH-HHHHhhCCcHHHHHHHhcCC
Q 021242 135 -----------------------IIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNR-YQVIALGGVQPLFSLVVNGG 190 (315)
Q Consensus 135 -----------------------~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~-~~i~~~g~v~~L~~lL~~~~ 190 (315)
+++.|+.++. .++++++..++++|.+++.++... ..+...|+++.+++++. ++
T Consensus 166 ~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~--~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~-~~ 242 (434)
T d1q1sc_ 166 LTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH--HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG-AT 242 (434)
T ss_dssp HHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHT-CS
T ss_pred HHHHHHHHhhcccccchhhhhhhHHHHHHHHHh--ccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccc-cc
Confidence 2344444544 446677888999999999876544 45567899999999996 56
Q ss_pred CcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcH
Q 021242 191 RAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVA 269 (315)
Q Consensus 191 ~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~ 269 (315)
+..++..++.+|.+++. .++.+..+.+.|+++.++.++.+. ++.+++.++++|.+++... ......+.+ .|++
T Consensus 243 ~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~---~~~v~~~a~~~L~~l~~~~-~~~~~~i~~--~~~i 316 (434)
T d1q1sc_ 243 ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP---KTNIQKEATWTMSNITAGR-QDQIQQVVN--HGLV 316 (434)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS---SHHHHHHHHHHHHHHTTSC-HHHHHHHHH--TTCH
T ss_pred hhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhccc---chhhhHHHHHHHhhhcccc-chhHHHHhh--hhhH
Confidence 78899999999999987 466778888899999999999975 8889999999999998744 455566777 8999
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHhhCC
Q 021242 270 DGIADVAQNGSAKGKTKAVALLKILVDDG 298 (315)
Q Consensus 270 ~~L~~ll~~~~~~~k~~A~~~L~~l~~~~ 298 (315)
+.++.++.++++.++..|.++|.++....
T Consensus 317 ~~li~~l~~~~~~v~~~a~~~l~nl~~~~ 345 (434)
T d1q1sc_ 317 PFLVGVLSKADFKTQKEAAWAITNYTSGG 345 (434)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhccChHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999887543
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.3e-25 Score=212.13 Aligned_cols=276 Identities=19% Similarity=0.168 Sum_probs=234.4
Q ss_pred hhHHHHHHHhCC-CCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc--hh
Q 021242 6 RTVRSLVTKLGS-VSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR--DS 82 (315)
Q Consensus 6 ~~i~~Lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~--~~ 82 (315)
+.++.++..|+. ++++.+..|+.+|++++. +++++..+++.|+||.|+.+|++++++++..|+++|++++.+.+ +.
T Consensus 59 ~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~ 137 (529)
T d1jdha_ 59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 137 (529)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHH
T ss_pred hHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhh
Confidence 468899999965 578999999999999986 47899999999999999999999999999999999999998865 45
Q ss_pred hhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCC-CchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHH
Q 021242 83 LMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVD-SYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALF 161 (315)
Q Consensus 83 ~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~ 161 (315)
.+.+.|+++.|+.+|++ ++++++..++++|.+|+..+ +.+..+...++ ++.|+.++..+ ..+.++..+++++.
T Consensus 138 ~~~~~g~i~~Lv~lL~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~-~~~L~~ll~~~-~~~~~~~~~~~~l~ 211 (529)
T d1jdha_ 138 AVRLAGGLQKMVALLNK----TNVKFLAITTDCLQILAYGNQESKLIILASGG-PQALVNIMRTY-TYEKLLWTTSRVLK 211 (529)
T ss_dssp HHHHHTHHHHHHHGGGC----CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH-HHHHHHHHHHC-CCHHHHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHc----cChHHHHHHHHHHHHHhhhhhHHHHHHHhccc-chHHHHHHHhh-hhHHHHHHHHHHHh
Confidence 66799999999999997 78899999999999999644 45666666544 99999999863 56788899999999
Q ss_pred HhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHH
Q 021242 162 GIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKEN 241 (315)
Q Consensus 162 ~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~ 241 (315)
+++.+++++..+++.|+++.|+.++. +++..+...+++++.+++...... ....|+++.|++++.++ +..+++.
T Consensus 212 ~ls~~~~~~~~~~~~g~~~~L~~ll~-~~~~~~~~~a~~~l~~ls~~~~~~--~~~~~~i~~Lv~ll~~~---~~~~~~~ 285 (529)
T d1jdha_ 212 VLSVCSSNKPAIVEAGGMQALGLHLT-DPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSD---DINVVTC 285 (529)
T ss_dssp HHTTSTTHHHHHHHTTHHHHHHTTTT-SSCHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCS---CHHHHHH
T ss_pred hhhccccccchhhhhhhhhhHHHHhc-ccchhhhhhhhhHHHhccccccch--hhhhhcchhhhhhcccc---cHHHHHH
Confidence 99999999999999999999999996 567788899999999997643322 22246799999999875 8899999
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHh--hCCHHHHHHHHHHHHHHhhC
Q 021242 242 AVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQ--NGSAKGKTKAVALLKILVDD 297 (315)
Q Consensus 242 a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~--~~~~~~k~~A~~~L~~l~~~ 297 (315)
++++|++++.. ++..+..+.+ .|+++.|+.++. ++.+.+++.|..+|+++...
T Consensus 286 a~~~L~~l~~~-~~~~~~~i~~--~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~ 340 (529)
T d1jdha_ 286 AAGILSNLTCN-NYKNKMMVCQ--VGGIEALVRTVLRAGDREDITEPAICALRHLTSR 340 (529)
T ss_dssp HHHHHHHHTTT-CHHHHHHHHH--TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHhhccc-hhHHHHHHHH--hhhHHHHHHHHHhhhcchhHHHHHHHHhhcccch
Confidence 99999999864 3456677777 899999998775 35789999999999998744
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.2e-24 Score=198.02 Aligned_cols=285 Identities=16% Similarity=0.175 Sum_probs=223.3
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc--hhhh
Q 021242 7 TVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR--DSLM 84 (315)
Q Consensus 7 ~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~--~~~i 84 (315)
.||.||++|++++|++|..|+++|.+++..++++|..+.+.|+||+|+++|++++++++..|+++|.+++.+++ +..+
T Consensus 3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i 82 (457)
T d1xm9a1 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 68999999999999999999999999998888999999999999999999999999999999999999997653 4567
Q ss_pred hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCc---------------------------------------
Q 021242 85 STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSY--------------------------------------- 125 (315)
Q Consensus 85 ~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~--------------------------------------- 125 (315)
.+.|+++.|+.++.+. .+++++..++++|.+|+..+..
T Consensus 83 ~~~g~v~~li~~l~~~---~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v 159 (457)
T d1xm9a1 83 RRQNGIREAVSLLRRT---GNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV 159 (457)
T ss_dssp HHTTCHHHHHHHHTTC---CCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred HHCCChHHHHHHHhcc---CcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHH
Confidence 7999999999999752 5677788888888888754322
Q ss_pred -----------------hhhhhhccccHHHHHHHhhcc------------------------------------------
Q 021242 126 -----------------RPIIGAKRDIIHSLIEIIKTR------------------------------------------ 146 (315)
Q Consensus 126 -----------------~~~i~~~~g~i~~Lv~ll~~~------------------------------------------ 146 (315)
+..+....|+++.|+.++...
T Consensus 160 ~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 239 (457)
T d1xm9a1 160 FFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239 (457)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhh
Confidence 111222235566666655310
Q ss_pred -------------------------------------------------------CCChHHHHHHHHHHHHhccCCC---
Q 021242 147 -------------------------------------------------------NSPLRSVKDALKALFGIALYPL--- 168 (315)
Q Consensus 147 -------------------------------------------------------~~~~~~~~~a~~aL~~Ls~~~~--- 168 (315)
..++.....+.+++.+++....
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 319 (457)
T d1xm9a1 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS 319 (457)
T ss_dssp --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred hhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccch
Confidence 0122334456677777766433
Q ss_pred ---cHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCC---CCChhHHHHH
Q 021242 169 ---NRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGT---GSGHRVKENA 242 (315)
Q Consensus 169 ---~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~---~~~~~~~~~a 242 (315)
.+..+.+.|+++.|++++. +++..++..++++|.+|+.+++++..+.+ ++++.++.++.... ..+.+++..+
T Consensus 320 ~~~~~~~~~~~~~l~~L~~~l~-~~~~~v~~~a~~~l~~La~~~~~~~~i~~-~~i~~li~~L~~~~~~~~~~~~v~~~a 397 (457)
T d1xm9a1 320 SGMSQLIGLKEKGLPQIARLLQ-SGNSDVVRSGASLLSNMSRHPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSA 397 (457)
T ss_dssp HHHHHHHHTTSCCHHHHHHHTT-CSCHHHHHHHHHHHHHHHTSGGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHhhhc-CccHHHHHHHHHHHHHHhhChhHHHHHHH-hhHHHHHHHHhccccCcCCcHHHHHHH
Confidence 2334456799999999996 56788999999999999999999887764 68999999987531 1245789999
Q ss_pred HHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhh-CCHHHHHHHHHHHHHHhhCCC
Q 021242 243 VSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQN-GSAKGKTKAVALLKILVDDGN 299 (315)
Q Consensus 243 ~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~-~~~~~k~~A~~~L~~l~~~~~ 299 (315)
+.+|.+++..+. +.++.+++ .|+++.|+.++.+ +++.+++.|+.+|.+|..++.
T Consensus 398 ~~~L~~l~~~~~-~~~~~l~~--~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~ 452 (457)
T d1xm9a1 398 CYTVRNLMASQP-QLAKQYFS--SSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHHHHHTTCT-HHHHHHCC--HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred HHHHHHHhcCCH-HHHHHHHH--CCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHh
Confidence 999999997553 56677776 8999999999987 578999999999999965443
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=3.3e-24 Score=201.26 Aligned_cols=277 Identities=16% Similarity=0.130 Sum_probs=237.3
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc--hh
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSR--DS 82 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~--~~ 82 (315)
.+.++.++.+|.+++++++..|+++|.+++..++.+|..+.+.|++++|+.++.+.++.++..++++|.+++.+.. ..
T Consensus 161 ~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~ 240 (503)
T d1wa5b_ 161 ADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPD 240 (503)
T ss_dssp TTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred CCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchH
Confidence 4678999999999999999999999999999888999999999999999999999999999999999999998753 33
Q ss_pred hhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCC-chhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHH
Q 021242 83 LMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDS-YRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALF 161 (315)
Q Consensus 83 ~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~ 161 (315)
.....++++.|+.++.+ ++++.+..++++|.+|+...+ ....+.+. |+++.|+.++. .+++.+...|+++|.
T Consensus 241 ~~~~~~~l~~l~~~l~~----~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~-~~~~~l~~ll~--~~~~~v~~~al~~l~ 313 (503)
T d1wa5b_ 241 WSVVSQALPTLAKLIYS----MDTETLVDACWAISYLSDGPQEAIQAVIDV-RIPKRLVELLS--HESTLVQTPALRAVG 313 (503)
T ss_dssp HHHHGGGHHHHHHHTTC----CCHHHHHHHHHHHHHHHSSCHHHHHHHHHT-TCHHHHHHGGG--CSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc----ccHHHHHHHHHHHHhhccCCchhhhhhhhh-hhhhhhhhccc--CCchhhhhhHHHHHH
Confidence 44467899999999987 788999999999999997554 34555554 66999999999 568899999999999
Q ss_pred HhccCCCc-HHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHH
Q 021242 162 GIALYPLN-RYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVK 239 (315)
Q Consensus 162 ~Ls~~~~~-~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~ 239 (315)
|++...+. ...+++.|+++.+..++. +++..++..++++|+|++. ++.....+.+.++++.++.++..+ +..++
T Consensus 314 nl~~~~~~~~~~~~~~~~l~~l~~ll~-~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~---~~~v~ 389 (503)
T d1wa5b_ 314 NIVTGNDLQTQVVINAGVLPALRLLLS-SPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA---EYKTK 389 (503)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS---CHHHH
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccC---ChhHH
Confidence 99986554 456678899999999996 5678899999999999977 567788888899999999999986 88999
Q ss_pred HHHHHHHHHHhccCCH--HHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 021242 240 ENAVSALLNLVNFGGE--RAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKIL 294 (315)
Q Consensus 240 ~~a~~~L~~l~~~~~~--~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l 294 (315)
..++++|.+++..+.. +....+++ .|+++.|+++++..++.+...+...|.++
T Consensus 390 ~~a~~~l~nl~~~~~~~~~~~~~l~~--~~~l~~l~~~L~~~d~~~~~~~L~~l~~l 444 (503)
T d1wa5b_ 390 KEACWAISNASSGGLQRPDIIRYLVS--QGCIKPLCDLLEIADNRIIEVTLDALENI 444 (503)
T ss_dssp HHHHHHHHHHHHHTTTCTHHHHHHHH--TTCHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHH--CCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 9999999999874432 34567777 99999999999999998888877765554
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=3.5e-20 Score=159.77 Aligned_cols=194 Identities=14% Similarity=0.118 Sum_probs=166.1
Q ss_pred CCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHH-HHcCCCHHHHHHHHHHHHhcCcccc--hhhhhhcCchHHHH
Q 021242 18 VSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAE-ILYSSSHAFQENAAATLLNLSITSR--DSLMSTRGLLDAIS 94 (315)
Q Consensus 18 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~a~~~L~~la~~~~--~~~i~~~~~i~~L~ 94 (315)
.+.+.+..|+.+|.+++. +.+++..+...|++++++. ++++++++++..|+++|.+++.+++ ...+...|+++.|+
T Consensus 29 ~~~~~~~~Al~~L~~L~~-~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv 107 (264)
T d1xqra1 29 ADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL 107 (264)
T ss_dssp HHHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence 356889999999999995 4778999999999999986 7788999999999999999998764 34566899999999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHhhc-CCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhcc-CCCcHHH
Q 021242 95 HVLRHHSTSTSSAAVQSSAATLHSLLV-VDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL-YPLNRYQ 172 (315)
Q Consensus 95 ~lL~~~~~~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~ 172 (315)
+++.+ ..+++++..++++|.+++. .++++..+...+| ++.|++++. ++++.++..++++|++++. +++++..
T Consensus 108 ~lL~~---~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~g-i~~L~~lL~--~~~~~~~~~a~~~L~~l~~~~~~~~~~ 181 (264)
T d1xqra1 108 RLLDR---DACDTVRVKALFAISCLVREQEAGLLQFLRLDG-FSVLMRAMQ--QQVQKLKVKSAFLLQNLLVGHPEHKGT 181 (264)
T ss_dssp HHHHH---CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH-HHHHHHHHH--SSCHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHhhc---CCCHHHHHHHHHHHHHHhccchhhHHHHHHhhh-hhHHHHHHh--cCchHHHHHHHHHHHHHHhccHHHHHH
Confidence 99975 2578899999999999996 4556777777666 999999999 5689999999999999987 6788889
Q ss_pred HHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHhcC
Q 021242 173 VIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKKCC 219 (315)
Q Consensus 173 i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~ 219 (315)
+++.|+++.|+.++. +++..+++.++++|.+|+. +++.+..+...+
T Consensus 182 ~~~~~~v~~L~~lL~-~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~ 228 (264)
T d1xqra1 182 LCSMGMVQQLVALVR-TEHSPFHEHVLGALCSLVTDFPQGVRECREPE 228 (264)
T ss_dssp HHHTTHHHHHHHHHT-SCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGG
T ss_pred HHHhhhHHHHHHHHc-CCCHHHHHHHHHHHHHHHhcCHHHHHHHHHhh
Confidence 999999999999996 5788999999999999987 466666665543
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=5.7e-18 Score=153.18 Aligned_cols=242 Identities=15% Similarity=0.162 Sum_probs=184.3
Q ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHhcCccc-c-hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc-CCC
Q 021242 48 GSIPYLAEILYSSSHAFQENAAATLLNLSITS-R-DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV-VDS 124 (315)
Q Consensus 48 g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~-~-~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~-~~~ 124 (315)
+.||.|+++|++++++++..|+++|.|+|.++ + +..+.+.|++|.|+++|++ ++++++..|+++|.+|+. +++
T Consensus 2 ~~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~----~~~~v~~~a~~aL~~L~~~~~~ 77 (457)
T d1xm9a1 2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS----PNQNVQQAAAGALRNLVFRSTT 77 (457)
T ss_dssp CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTS----SCHHHHHHHHHHHHHHHSSCHH
T ss_pred CCHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCC----CCHHHHHHHHHHHHHHHcCCHH
Confidence 46999999999999999999999999999865 3 5667899999999999997 789999999999999995 567
Q ss_pred chhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHh---------------cC
Q 021242 125 YRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVV---------------NG 189 (315)
Q Consensus 125 ~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~---------------~~ 189 (315)
++..+.+.|| ++.|+.++.. ..++.++..|+++|++++.++..+......|. +.++..+. ..
T Consensus 78 ~~~~i~~~g~-v~~li~~l~~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~ 154 (457)
T d1xm9a1 78 NKLETRRQNG-IREAVSLLRR-TGNAEIQKQLTGLLWNLSSTDELKEELIADAL-PVLADRVIIPFSGWCDGNSNMSREV 154 (457)
T ss_dssp HHHHHHHTTC-HHHHHHHHTT-CCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHH-HHHHHHTTHHHHTCC---------C
T ss_pred HHHHHHHCCC-hHHHHHHHhc-cCcHHHHHHHHHHHHHHHhhhhhHHHHHhccc-HHHHHHHHhhhhhhhcchhhhhccc
Confidence 7888888766 9999999875 36788999999999999998888777665544 33333321 12
Q ss_pred CCcchHHHHHHHHHHHhcChhhHHHHHhcCC-HHHHHHHhhcC-------------------------------------
Q 021242 190 GRAGIVEDASAVIAQIAGCEESVDEFKKCCG-IGVLVDLLDLG------------------------------------- 231 (315)
Q Consensus 190 ~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~-i~~Lv~ll~~~------------------------------------- 231 (315)
.+..+...++++|.+++.+++++..+...+| ++.++.+++..
T Consensus 155 ~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 234 (457)
T d1xm9a1 155 VDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLE 234 (457)
T ss_dssp CCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 3456678899999999888887777655443 66666554210
Q ss_pred -----------------------------------------------------------CCCChhHHHHHHHHHHHHhcc
Q 021242 232 -----------------------------------------------------------TGSGHRVKENAVSALLNLVNF 252 (315)
Q Consensus 232 -----------------------------------------------------------~~~~~~~~~~a~~~L~~l~~~ 252 (315)
...++..++.+.+++.+++..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~ 314 (457)
T d1xm9a1 235 YNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTAS 314 (457)
T ss_dssp HTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTC
T ss_pred hhhhhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhc
Confidence 001234456677777777654
Q ss_pred CCH---HHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhC
Q 021242 253 GGE---RAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDD 297 (315)
Q Consensus 253 ~~~---~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~ 297 (315)
... ...+..+. ..|+++.|+.+++++++.++..|..+|.+++.+
T Consensus 315 ~~~~~~~~~~~~~~-~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~ 361 (457)
T d1xm9a1 315 KGLMSSGMSQLIGL-KEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH 361 (457)
T ss_dssp SSSHHHHHHHHHHT-TSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred cccchHHHHHHHHH-HcCChHHHHhhhcCccHHHHHHHHHHHHHHhhC
Confidence 321 11233332 379999999999999999999999999999865
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=9e-19 Score=150.79 Aligned_cols=184 Identities=15% Similarity=0.109 Sum_probs=158.7
Q ss_pred CHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHH-HhhccCCChHHHHHHHHHHHHhccC-CCcHHHHHhhCCcHHH
Q 021242 105 SSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIE-IIKTRNSPLRSVKDALKALFGIALY-PLNRYQVIALGGVQPL 182 (315)
Q Consensus 105 ~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~-ll~~~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~v~~L 182 (315)
+.+.+..|+.+|.+|+...+++..+...|| +++|+. ++. +++++++..|+++|++++.+ +..+..+++.|++|.|
T Consensus 30 ~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg-~~~ll~~ll~--s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~L 106 (264)
T d1xqra1 30 DQQEREGALELLADLCENMDNAADFCQLSG-MHLLVGRYLE--AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL 106 (264)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHTTH-HHHHHHTTTT--CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCHHHHHHHHHcCC-HHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence 356778899999999988788888888777 788886 566 56899999999999999985 5567788899999999
Q ss_pred HHHHhcCCCcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHH
Q 021242 183 FSLVVNGGRAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEV 261 (315)
Q Consensus 183 ~~lL~~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i 261 (315)
++++.++++..++..++++|.+++. ++.++..+.+.||++.|++++.++ +..++..++++|++++.... ..+..+
T Consensus 107 v~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~---~~~~~~~a~~~L~~l~~~~~-~~~~~~ 182 (264)
T d1xqra1 107 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ---VQKLKVKSAFLLQNLLVGHP-EHKGTL 182 (264)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS---CHHHHHHHHHHHHHHHHHCG-GGHHHH
T ss_pred HHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcC---chHHHHHHHHHHHHHHhccH-HHHHHH
Confidence 9999755667789999999999987 577888899999999999999986 89999999999999987543 455677
Q ss_pred HHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhC
Q 021242 262 KEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDD 297 (315)
Q Consensus 262 ~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~ 297 (315)
.. .|+++.|+.+++++++.+++.|.++|.+|...
T Consensus 183 ~~--~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~ 216 (264)
T d1xqra1 183 CS--MGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 216 (264)
T ss_dssp HH--TTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HH--hhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 77 89999999999999999999999999998754
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=3.6e-08 Score=92.23 Aligned_cols=266 Identities=12% Similarity=0.075 Sum_probs=170.5
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhh
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLM 84 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i 84 (315)
...++.+.+++++.++.+|..|+..+..+++.-.. .......+|.+..++++.++.+|..|+.++..++..-.....
T Consensus 163 ~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~~~ 239 (588)
T d1b3ua_ 163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDL 239 (588)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcH---HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHHHH
Confidence 33456777788889999999999999999865321 223345678888888888999999999999887644221111
Q ss_pred hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhc
Q 021242 85 STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIA 164 (315)
Q Consensus 85 ~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls 164 (315)
....++.+..++.+ .+..++..++.+|..+...-... +.. ..+++.+..++. +.++.++..|+.+|..++
T Consensus 240 -~~~i~~~l~~~~~D----~~~~Vr~~~~~~l~~l~~~~~~~--~~~-~~l~~~l~~ll~--d~~~~vr~~a~~~l~~~~ 309 (588)
T d1b3ua_ 240 -EALVMPTLRQAAED----KSWRVRYMVADKFTELQKAVGPE--ITK-TDLVPAFQNLMK--DCEAEVRAAASHKVKEFC 309 (588)
T ss_dssp -HHHTHHHHHHHHTC----SSHHHHHHHHHTHHHHHHHHCHH--HHH-HTHHHHHHHHHT--CSSHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhccc----ccHHHHHHHHHhHHHHHHHhhhh--hhh-hhhhHHHHHHHh--ccchHHHHHHHHHHHHHH
Confidence 22257788888876 67889999999999887421111 111 245889999998 568899999999999887
Q ss_pred cC--CCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHH
Q 021242 165 LY--PLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENA 242 (315)
Q Consensus 165 ~~--~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a 242 (315)
.. .+......-...++.+...+. +++..++..+...+..++.. -+..... ...+|.+..++++. ++.++..+
T Consensus 310 ~~l~~~~~~~~~~~~i~~~l~~~~~-d~~~~vr~~~~~~l~~~~~~-~~~~~~~-~~l~p~l~~~l~d~---~~~v~~~~ 383 (588)
T d1b3ua_ 310 ENLSADCRENVIMSQILPCIKELVS-DANQHVKSALASVIMGLSPI-LGKDNTI-EHLLPLFLAQLKDE---CPEVRLNI 383 (588)
T ss_dssp HTSCTTTHHHHHHHTHHHHHHHHHT-CSCHHHHHHHHTTGGGGHHH-HCHHHHH-HHTHHHHHHHHTCS---CHHHHHHH
T ss_pred HHHhhhhhhhhhHHHHHHHHHHhhc-CCChHHHHHHHHHHhhhhhc-cchhHHH-HHHHHHHHHHHHhh---hhhhhhHH
Confidence 63 334444344567777777774 55666666666555554321 0111111 22466667777653 66666666
Q ss_pred HHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 021242 243 VSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILV 295 (315)
Q Consensus 243 ~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~ 295 (315)
...+..+....+.. .+. ...++.+..++++.++++|..+...+..+.
T Consensus 384 ~~~l~~~~~~~~~~---~~~---~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~ 430 (588)
T d1b3ua_ 384 ISNLDCVNEVIGIR---QLS---QSLLPAIVELAEDAKWRVRLAIIEYMPLLA 430 (588)
T ss_dssp HTTCHHHHHHSCHH---HHH---HHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcchh---hhh---hHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 66665554432211 111 235556666666666666666666665554
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=98.91 E-value=2.2e-07 Score=77.84 Aligned_cols=233 Identities=14% Similarity=0.051 Sum_probs=147.3
Q ss_pred hhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhh
Q 021242 4 KRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSL 83 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~ 83 (315)
++...+.|++.|++++|.+|..|+..|..+... .++|.|+.++++.++.++..|+.+|..+.......-
T Consensus 17 ~~~~~~~L~~~L~d~~~~vR~~A~~~L~~~~~~-----------~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~ 85 (276)
T d1oyza_ 17 KKLNDDELFRLLDDHNSLKRISSARVLQLRGGQ-----------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED 85 (276)
T ss_dssp HTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCCH-----------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH
T ss_pred ccCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCH-----------hHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccccc
Confidence 466778999999999999999999999887531 348999999999999999999999998865433211
Q ss_pred hhhcCchHHHHHHH-hcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHH
Q 021242 84 MSTRGLLDAISHVL-RHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFG 162 (315)
Q Consensus 84 i~~~~~i~~L~~lL-~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~ 162 (315)
..++.+...+ ++ .++.++..++.+|..+...... .. ..+++.+...+. +.++.++..|+.++..
T Consensus 86 ----~~~~~l~~~~l~d----~~~~vr~~a~~aL~~~~~~~~~----~~-~~~~~~l~~~~~--d~~~~vr~~a~~~l~~ 150 (276)
T d1oyza_ 86 ----NVFNILNNMALND----KSACVRATAIESTAQRCKKNPI----YS-PKIVEQSQITAF--DKSTNVRRATAFAISV 150 (276)
T ss_dssp ----HHHHHHHHHHHHC----SCHHHHHHHHHHHHHHHHHCGG----GH-HHHHHHHHHHTT--CSCHHHHHHHHHHHHT
T ss_pred ----chHHHHHHHHhcC----CChhHHHHHHHHHHHHccccch----hh-HHHHHHHHHHhc--CcchHHHHHHHHHHhh
Confidence 1234444444 44 6789999999999887643221 11 134677777777 4577888888888776
Q ss_pred hccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcC----------------hhhHHHH----H---hcC
Q 021242 163 IALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGC----------------EESVDEF----K---KCC 219 (315)
Q Consensus 163 Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~----------------~~~~~~i----~---~~~ 219 (315)
+.. ...++.+..++. +.+......+...+...... ...+... . ...
T Consensus 151 ~~~----------~~~~~~l~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~ 219 (276)
T d1oyza_ 151 IND----------KATIPLLINLLK-DPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKR 219 (276)
T ss_dssp C-------------CCHHHHHHHHT-CSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGG
T ss_pred cch----------HHHHHHHHHhcc-cccchhhhhHHHHHHhhhccccccchhhhhhhhhhhhhhhhhhccccchhhhhh
Confidence 432 234445555553 23333333333333332211 1111111 0 112
Q ss_pred CHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhh-CCHHHHHHHHHHHH
Q 021242 220 GIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQN-GSAKGKTKAVALLK 292 (315)
Q Consensus 220 ~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~-~~~~~k~~A~~~L~ 292 (315)
.++.|++.+.+ +.++..++.+|..+. . .+.++.|..++.+ +++.++..|...|+
T Consensus 220 ~~~~L~~~l~d-----~~vr~~a~~aL~~ig---~-----------~~~~~~L~~~l~~~~d~~vr~~A~~~L~ 274 (276)
T d1oyza_ 220 VLSVLCDELKK-----NTVYDDIIEAAGELG---D-----------KTLLPVLDTMLYKFDDNEIITSAIDKLK 274 (276)
T ss_dssp GHHHHHHHHTS-----SSCCHHHHHHHHHHC---C-----------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred hHHHHHHHhCC-----hHHHHHHHHHHHHcC---C-----------HHHHHHHHHHHccCCCHHHHHHHHHHHc
Confidence 46777777763 246666777766652 1 2467777777776 57889988887663
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=9.5e-08 Score=89.29 Aligned_cols=262 Identities=12% Similarity=0.058 Sum_probs=160.0
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhcC
Q 021242 9 RSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTRG 88 (315)
Q Consensus 9 ~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~ 88 (315)
+.+..++.+.++.+|..|+.++..++..-+. .-.+.-.+|.+..+..+.....+..|+..+..+........ ...
T Consensus 90 ~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~---~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~~--~~~ 164 (588)
T d1b3ua_ 90 PPLESLATVEETVVRDKAVESLRAISHEHSP---SDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAV--KAE 164 (588)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHTTSCH---HHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHH--HHH
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHHH--HHH
Confidence 3444455555666666666666666543211 11222334444455554444555555555555543322111 122
Q ss_pred chHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCC
Q 021242 89 LLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPL 168 (315)
Q Consensus 89 ~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~ 168 (315)
.++.+.+++.+ .++.++..++.++..++..-.... +. ..+++.+..++. +.++.++..|+.++..++..-.
T Consensus 165 l~~~~~~l~~D----~~~~VR~~a~~~l~~~~~~~~~~~-~~--~~l~~~l~~l~~--d~~~~vr~~a~~~l~~i~~~~~ 235 (588)
T d1b3ua_ 165 LRQYFRNLCSD----DTPMVRRAAASKLGEFAKVLELDN-VK--SEIIPMFSNLAS--DEQDSVRLLAVEACVNIAQLLP 235 (588)
T ss_dssp HHHHHHHHHTC----SCHHHHHHHHHHHHHHHHTSCHHH-HH--HTHHHHHHHHHT--CSCHHHHTTHHHHHHHHHHHSC
T ss_pred HHHHHHHHhcc----CCHHHHHHHHHHHHHHHHHhcHHH-HH--HHHHHHHHHHhc--CCchhhHHHHHHHHHHhhccCC
Confidence 45667777776 688999999999998886433222 11 255677777877 5688888889999988875322
Q ss_pred cHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHH
Q 021242 169 NRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLN 248 (315)
Q Consensus 169 ~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~ 248 (315)
.. ......+|.+..++. +++..++..++..|.+++..-. ..+.....++.+..++.+. +..++..++..+..
T Consensus 236 ~~--~~~~~i~~~l~~~~~-D~~~~Vr~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~ll~d~---~~~vr~~a~~~l~~ 307 (588)
T d1b3ua_ 236 QE--DLEALVMPTLRQAAE-DKSWRVRYMVADKFTELQKAVG--PEITKTDLVPAFQNLMKDC---EAEVRAAASHKVKE 307 (588)
T ss_dssp HH--HHHHHTHHHHHHHHT-CSSHHHHHHHHHTHHHHHHHHC--HHHHHHTHHHHHHHHHTCS---SHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHHHhcc-cccHHHHHHHHHhHHHHHHHhh--hhhhhhhhhHHHHHHHhcc---chHHHHHHHHHHHH
Confidence 11 122345777777774 5667788888888888764211 1122234578888888875 88999999999998
Q ss_pred HhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 021242 249 LVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKIL 294 (315)
Q Consensus 249 l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l 294 (315)
++............. ...++.+...+++.++.+|..++..+..+
T Consensus 308 ~~~~l~~~~~~~~~~--~~i~~~l~~~~~d~~~~vr~~~~~~l~~~ 351 (588)
T d1b3ua_ 308 FCENLSADCRENVIM--SQILPCIKELVSDANQHVKSALASVIMGL 351 (588)
T ss_dssp HHHTSCTTTHHHHHH--HTHHHHHHHHHTCSCHHHHHHHHTTGGGG
T ss_pred HHHHHhhhhhhhhhH--HHHHHHHHHhhcCCChHHHHHHHHHHhhh
Confidence 886432222122222 45777788888888888888877665544
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.61 E-value=2e-06 Score=77.10 Aligned_cols=281 Identities=10% Similarity=0.113 Sum_probs=171.8
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHh-CCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc-hhhh--h
Q 021242 10 SLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISE-AGSIPYLAEILYSSSHAFQENAAATLLNLSITSR-DSLM--S 85 (315)
Q Consensus 10 ~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~-~~~i--~ 85 (315)
.+...|...++-....+...+..++..+..+....-. ......+-.+..+++...+..|+..|..+...++ +..+ .
T Consensus 126 ~f~~~l~~~d~~~~~~s~~i~~ll~~~~~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R~~fw~~ 205 (477)
T d1ho8a_ 126 LFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLH 205 (477)
T ss_dssp HHHHCSCSSHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTT
T ss_pred HHHHhccCchhHHHHHHHHHHHHHHhccccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcCccHHHHHHHc
Confidence 4444455555556666666777776554333221111 1123333334466778888889999988877765 4443 3
Q ss_pred hcCchHHHHHHHhcC-------------CCCCCHHHHHHHHHHHHHhhcCCCchhhhhhcc-ccHHHHHHHhhccCCChH
Q 021242 86 TRGLLDAISHVLRHH-------------STSTSSAAVQSSAATLHSLLVVDSYRPIIGAKR-DIIHSLIEIIKTRNSPLR 151 (315)
Q Consensus 86 ~~~~i~~L~~lL~~~-------------~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~-g~i~~Lv~ll~~~~~~~~ 151 (315)
+...++.|+++|+.. ++....+..-.++-++|-||..++....+.... +.|+.|+.+++. ....+
T Consensus 206 ~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~-s~KEK 284 (477)
T d1ho8a_ 206 EKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKI-TIKEK 284 (477)
T ss_dssp HHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHH-CCSHH
T ss_pred ccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHh-hhHHH
Confidence 555678888887531 001234667789999999999877766665432 458899999986 35678
Q ss_pred HHHHHHHHHHHhccCCC--c----HHHHHhhCCcHHHHHHHhcC--CCcchHHHHH---HHH----HHHhcChhh-----
Q 021242 152 SVKDALKALFGIALYPL--N----RYQVIALGGVQPLFSLVVNG--GRAGIVEDAS---AVI----AQIAGCEES----- 211 (315)
Q Consensus 152 ~~~~a~~aL~~Ls~~~~--~----~~~i~~~g~v~~L~~lL~~~--~~~~~~~~a~---~~L----~~L~~~~~~----- 211 (315)
+.+.++.+|.|+...+. + ...++..++++. ++.|... .++.+.+..- ..| ..+++.++.
T Consensus 285 vvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~-l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~Ev~ 363 (477)
T d1ho8a_ 285 VSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPT-VQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELD 363 (477)
T ss_dssp HHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHH-HHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHH-HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHh
Confidence 99999999999987532 2 233555566654 5555432 3455543311 111 222222211
Q ss_pred ----------H-HHHHh--------cCC--HHHHHHHhhc----CC---CCChhHHHHHHHHHHHHhccCCHHHHHHHHH
Q 021242 212 ----------V-DEFKK--------CCG--IGVLVDLLDL----GT---GSGHRVKENAVSALLNLVNFGGERAAEEVKE 263 (315)
Q Consensus 212 ----------~-~~i~~--------~~~--i~~Lv~ll~~----~~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~ 263 (315)
+ +.|+. .++ +..|+++|+. ++ ..++.+..-||.=+..++++.+ +. +.+++
T Consensus 364 Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P-~g-r~il~ 441 (477)
T d1ho8a_ 364 SKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLP-ES-IDVLD 441 (477)
T ss_dssp HTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCT-TH-HHHHH
T ss_pred cCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCc-ch-hHHHH
Confidence 1 23332 222 7888999862 10 1134455556666788888765 33 34444
Q ss_pred HccCcHHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 021242 264 MAMQVADGIADVAQNGSAKGKTKAVALLKILV 295 (315)
Q Consensus 264 ~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~ 295 (315)
..|+=..+..++.+++|.||..|-..++.+-
T Consensus 442 -~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 472 (477)
T d1ho8a_ 442 -KTGGKADIMELLNHSDSRVKYEALKATQAII 472 (477)
T ss_dssp -HHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred -HcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3788888889999999999999999887663
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=1.4e-07 Score=95.18 Aligned_cols=273 Identities=12% Similarity=0.081 Sum_probs=172.1
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhh
Q 021242 7 TVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMST 86 (315)
Q Consensus 7 ~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~ 86 (315)
+|..|++.+.++|++.|.-|+..|.+....+.-....=....+++.|+++|.+.++++|..|+.+|..+...-....+
T Consensus 4 ~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~-- 81 (1207)
T d1u6gc_ 4 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQV-- 81 (1207)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHH--
T ss_pred hHHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhhH--
Confidence 678999999999999999999988876543221111111223688999999999999999999999888765432221
Q ss_pred cCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc-CC---Cchhhhh-hccccHHHHHHHhhccCCChHHHHHHHHHHH
Q 021242 87 RGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV-VD---SYRPIIG-AKRDIIHSLIEIIKTRNSPLRSVKDALKALF 161 (315)
Q Consensus 87 ~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~-~~---~~~~~i~-~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~ 161 (315)
...++.|+..+.+ ++.+.+..++.+|..+.. .+ .+..... ....+++.+...+.. ..++.++..|+.+|.
T Consensus 82 ~~l~~~L~~~l~~----~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~v~~~al~~l~ 156 (1207)
T d1u6gc_ 82 ETIVDTLCTNMLS----DKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAK-QEDVSVQLEALDIMA 156 (1207)
T ss_dssp HHHHHHHHHHTTC----SSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSC-CSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC----CchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHH
Confidence 2356777777765 455667767666665542 11 1111111 112334555555543 356788888999988
Q ss_pred HhccC-CCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHH
Q 021242 162 GIALY-PLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKE 240 (315)
Q Consensus 162 ~Ls~~-~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~ 240 (315)
.+... +..-.. .....++.++..+. +++..++..|+.+|..++..-.. ... ...++.+++.+..+ .+...+.
T Consensus 157 ~l~~~~g~~l~~-~~~~il~~l~~~l~-~~~~~vR~~A~~~l~~l~~~~~~--~~~-~~~~~~ll~~l~~~--~~~~~~~ 229 (1207)
T d1u6gc_ 157 DMLSRQGGLLVN-FHPSILTCLLPQLT-SPRLAVRKRTIIALGHLVMSCGN--IVF-VDLIEHLLSELSKN--DSMSTTR 229 (1207)
T ss_dssp HHHHHTCSSCTT-THHHHHHHHGGGGG-CSSHHHHHHHHHHHHHHTTTC------C-TTHHHHHHHHHHHT--CSSCSCT
T ss_pred HHHHHhhHhhHH-HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHCCH--HHH-HHHHHHHHHHHccC--CCHHHHH
Confidence 87652 211000 01234556666664 56677889999999998763211 111 12367777766643 2444555
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhC
Q 021242 241 NAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDD 297 (315)
Q Consensus 241 ~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~ 297 (315)
.++.++..++...+......+ ..+++.+...++++++.+|+.|..++..+...
T Consensus 230 ~~~~~l~~l~~~~~~~~~~~l----~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~ 282 (1207)
T d1u6gc_ 230 TYIQCIAAISRQAGHRIGEYL----EKIIPLVVKFCNVDDDELREYCIQAFESFVRR 282 (1207)
T ss_dssp THHHHHHHHHHHSSGGGTTSC----TTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcchhhHHHH----HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHh
Confidence 666777777764432221122 56788899999999999999999988888653
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=4.4e-05 Score=67.39 Aligned_cols=274 Identities=10% Similarity=0.066 Sum_probs=165.8
Q ss_pred hhHHHHHHHhCC--CCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCC--CHHHHHHHHHHHHhcCcccch
Q 021242 6 RTVRSLVTKLGS--VSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSS--SHAFQENAAATLLNLSITSRD 81 (315)
Q Consensus 6 ~~i~~Lv~~L~~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~la~~~~~ 81 (315)
..++.+++.+.+ .++..+..++.++..+..........-.-...++.++..+.+. +..++..|+.++..+......
T Consensus 127 ~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~ 206 (458)
T d1ibrb_ 127 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA 206 (458)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred chhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhh
Confidence 567788888865 3567777888888877654332221112234577888888654 467999999999888765421
Q ss_pred ---hhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc-CCC-chhhhhhccccHHHHHHHhhccCCChHHHHHH
Q 021242 82 ---SLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV-VDS-YRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDA 156 (315)
Q Consensus 82 ---~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~-~~~-~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a 156 (315)
.........+.+..++.+ ++++++..++.+|..+.. ..+ ....+. ..+.+.+..... +.+..++..|
T Consensus 207 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~i~~~~~~~~~~~l~--~~~~~~~~~~~~--~~~~~~~~~a 278 (458)
T d1ibrb_ 207 NFDKESERHFIMQVVCEATQC----PDTRVRVAALQNLVKIMSLYYQYMETYMG--PALFAITIEAMK--SDIDEVALQG 278 (458)
T ss_dssp HHTSHHHHHHHHHHHHHHTTC----SSHHHHHHHHHHHHHHHHHCGGGCTTTTT--TTHHHHHHHHHH--CSSHHHHHHH
T ss_pred hhhhHHHHHHhHhhHHHHhcC----CCHHHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHHHHhc--cccHHHHHHH
Confidence 111233355666666765 688999999999999874 222 122222 232344445555 4577888888
Q ss_pred HHHHHHhccCC---------------------CcHHHHHhhCCcHHHHHHHhc------CCCcchHHHHHHHHHHHhcC-
Q 021242 157 LKALFGIALYP---------------------LNRYQVIALGGVQPLFSLVVN------GGRAGIVEDASAVIAQIAGC- 208 (315)
Q Consensus 157 ~~aL~~Ls~~~---------------------~~~~~i~~~g~v~~L~~lL~~------~~~~~~~~~a~~~L~~L~~~- 208 (315)
+..+..++... ..-....-....+.+.+.+.. +.+..++..+..++..++..
T Consensus 279 ~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~ 358 (458)
T d1ibrb_ 279 IEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC 358 (458)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhc
Confidence 88887775311 000111112233444444421 11224566677777776542
Q ss_pred hhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHH
Q 021242 209 EESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAV 288 (315)
Q Consensus 209 ~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~ 288 (315)
++. +.. ..++.+...+++. +...|+.++.+|..++....+......+ ...++.|...++++++.||..|.
T Consensus 359 ~~~---~~~-~l~~~i~~~l~s~---~~~~r~aal~~l~~i~~~~~~~~~~~~l---~~i~~~l~~~l~d~~~~VR~~a~ 428 (458)
T d1ibrb_ 359 EDD---IVP-HVLPFIKEHIKNP---DWRYRDAAVMAFGCILEGPEPSQLKPLV---IQAMPTLIELMKDPSVVVRDTAA 428 (458)
T ss_dssp TTT---HHH-HHHHHHHHHTTCS---SHHHHHHHHHHHHHTSSSSCTTTTCTTT---TTHHHHHHHGGGCSCHHHHHHHH
T ss_pred cHh---hhh-HHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHhcCHhHHHHHH---HHHHHHHHHHhCCCCHHHHHHHH
Confidence 111 111 1234555566654 7889999999999997532222111111 46789999999999999999999
Q ss_pred HHHHHHhhC
Q 021242 289 ALLKILVDD 297 (315)
Q Consensus 289 ~~L~~l~~~ 297 (315)
++|..+.+.
T Consensus 429 ~~l~~i~~~ 437 (458)
T d1ibrb_ 429 WTVGRICEL 437 (458)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888754
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=9e-06 Score=79.50 Aligned_cols=275 Identities=11% Similarity=0.019 Sum_probs=157.3
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhh-h
Q 021242 7 TVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLM-S 85 (315)
Q Consensus 7 ~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i-~ 85 (315)
.++.++..|+++++.+|..++++|..++..-......-.-...++.++..+.+.++.++..|+++|.++.......+. .
T Consensus 437 li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~ 516 (888)
T d1qbkb_ 437 LIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPY 516 (888)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGG
T ss_pred hhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 466788888999999999999999988753211111112356789999999999999999999999988755332211 1
Q ss_pred hcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc---CCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHH
Q 021242 86 TRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV---VDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFG 162 (315)
Q Consensus 86 ~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~---~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~ 162 (315)
-...++.++..+.. ........+..++..++. ..-.+..+.+ .+++.+.........+.......+.++..
T Consensus 517 ~~~il~~l~~~l~~----~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~--~l~~~l~~~~~~~~~~~~~~~~~le~l~~ 590 (888)
T d1qbkb_ 517 LAYILDTLVFAFSK----YQHKNLLILYDAIGTLADSVGHHLNKPEYIQ--MLMPPLIQKWNMLKDEDKDLFPLLECLSS 590 (888)
T ss_dssp HHHHHHHHHHHTTT----CCHHHHHHHHHHHHHHHHHHGGGGCSHHHHH--HHHHHHHHHHTTSCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhhhccccchHHHH--HHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 23356667777764 344555555555555542 1112222222 34566666554221222233344555555
Q ss_pred hcc--CCCcHH---HHHhhCCcHHHHHH--------Hhc----CCCcchHHHHHHHHHHHhcC-hhhHHHHHhcC-CHHH
Q 021242 163 IAL--YPLNRY---QVIALGGVQPLFSL--------VVN----GGRAGIVEDASAVIAQIAGC-EESVDEFKKCC-GIGV 223 (315)
Q Consensus 163 Ls~--~~~~~~---~i~~~g~v~~L~~l--------L~~----~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~-~i~~ 223 (315)
+.. ...... .+.+ .++..+... ... .++..+...++.++..+... ......++... .++.
T Consensus 591 i~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~ 669 (888)
T d1qbkb_ 591 VATALQSGFLPYCEPVYQ-RCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTL 669 (888)
T ss_dssp HHHHSTTTTHHHHHHHHH-HHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHH
T ss_pred HHHHhHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHH
Confidence 443 222111 1111 111111111 110 12334555666677766542 22233343333 4677
Q ss_pred HHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 021242 224 LVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILV 295 (315)
Q Consensus 224 Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~ 295 (315)
+...+++. ++.+++.+..++..++....+.....+ ...++.|..-++++.+.++.+|++.+-.+.
T Consensus 670 l~~~l~~~---~~~vr~~a~~llgdl~~~~~~~~~~~l----~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia 734 (888)
T d1qbkb_ 670 MYQCMQDK---MPEVRQSSFALLGDLTKACFQHVKPCI----ADFMPILGTNLNPEFISVCNNATWAIGEIS 734 (888)
T ss_dssp HHHHHTCS---SHHHHHHHHHHHHHHHHHCGGGTGGGH----HHHHHHHHHTCCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHhCCC---ChHHHHHHHHHHHHHHHhhhHHHHHHH----HHHHHHHHHHhCcCCHHHHHHHHHHHHHHH
Confidence 77778764 889999999999888865443322222 235666666677778899999998776554
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=98.29 E-value=5.3e-05 Score=62.60 Aligned_cols=134 Identities=7% Similarity=-0.055 Sum_probs=93.5
Q ss_pred hCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCc
Q 021242 46 EAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSY 125 (315)
Q Consensus 46 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~ 125 (315)
+....+.|+++|++.++.++..|+.+|..+. ....++.|+.++++ +++.++..|+.+|..+......
T Consensus 17 ~~~~~~~L~~~L~d~~~~vR~~A~~~L~~~~---------~~~~~~~l~~~l~d----~~~~vr~~a~~aL~~l~~~~~~ 83 (276)
T d1oyza_ 17 KKLNDDELFRLLDDHNSLKRISSARVLQLRG---------GQDAVRLAIEFCSD----KNYIRRDIGAFILGQIKICKKC 83 (276)
T ss_dssp HTSCHHHHHHHTTCSSHHHHHHHHHHHHHHC---------CHHHHHHHHHHHTC----SSHHHHHHHHHHHHHSCCCTTT
T ss_pred ccCCHHHHHHHhcCCCHHHHHHHHHHHHhhC---------CHhHHHHHHHHHcC----CCHHHHHHHHHHHHHhcccccc
Confidence 3556788999999999999999999997663 34568999999997 7889999999999887643332
Q ss_pred hhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHH
Q 021242 126 RPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQ 204 (315)
Q Consensus 126 ~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~ 204 (315)
.. ..++.|...+-+ +.++.++..|+.+|.+++........ ..++.+...+. +++..++..++.++..
T Consensus 84 ~~------~~~~~l~~~~l~-d~~~~vr~~a~~aL~~~~~~~~~~~~----~~~~~l~~~~~-d~~~~vr~~a~~~l~~ 150 (276)
T d1oyza_ 84 ED------NVFNILNNMALN-DKSACVRATAIESTAQRCKKNPIYSP----KIVEQSQITAF-DKSTNVRRATAFAISV 150 (276)
T ss_dssp HH------HHHHHHHHHHHH-CSCHHHHHHHHHHHHHHHHHCGGGHH----HHHHHHHHHTT-CSCHHHHHHHHHHHHT
T ss_pred cc------chHHHHHHHHhc-CCChhHHHHHHHHHHHHccccchhhH----HHHHHHHHHhc-CcchHHHHHHHHHHhh
Confidence 22 124555554432 56889999999999998864432221 23455666664 4555566556555543
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=3.9e-05 Score=74.85 Aligned_cols=277 Identities=11% Similarity=0.021 Sum_probs=158.0
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCccc--c-hhh
Q 021242 7 TVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITS--R-DSL 83 (315)
Q Consensus 7 ~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~--~-~~~ 83 (315)
.++.+.+.+.++++..|..|+.++..++....+...... ...+|.|+..+++.++.+|..|+++|..++..- . ..-
T Consensus 396 ~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l-~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~ 474 (888)
T d1qbkb_ 396 ILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDT 474 (888)
T ss_dssp HHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTH-HHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHH
T ss_pred HHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccc-hhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 345556677888999999999999998854332211111 245788888899999999999999999887532 1 111
Q ss_pred hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHh
Q 021242 84 MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGI 163 (315)
Q Consensus 84 i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~L 163 (315)
.-...++.++..+.+ +++.++..|+++|.++...... ........+++.|+..+.. .+......+..++..+
T Consensus 475 -~~~~~l~~ll~~l~d----~~~~V~~~a~~al~~l~~~~~~-~l~p~~~~il~~l~~~l~~--~~~~~~~~~~~al~~l 546 (888)
T d1qbkb_ 475 -YLKPLMTELLKRILD----SNKRVQEAACSAFATLEEEACT-ELVPYLAYILDTLVFAFSK--YQHKNLLILYDAIGTL 546 (888)
T ss_dssp -HTTTHHHHHHHHHSS----SCHHHHHHHHHHHHHHHHHHTT-SSGGGHHHHHHHHHHHTTT--CCHHHHHHHHHHHHHH
T ss_pred -hhhhhHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHhhh-hhhhHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHH
Confidence 123578888888876 6788999999999999842211 1111123457777777773 3555555555555555
Q ss_pred cc---CCCcHHHHHhhCCcHHHHHHHhcC-CCcchHHHHHHHHHHHhc-Ch----hhHHHHHhcCCHHHHH--------H
Q 021242 164 AL---YPLNRYQVIALGGVQPLFSLVVNG-GRAGIVEDASAVIAQIAG-CE----ESVDEFKKCCGIGVLV--------D 226 (315)
Q Consensus 164 s~---~~~~~~~i~~~g~v~~L~~lL~~~-~~~~~~~~a~~~L~~L~~-~~----~~~~~i~~~~~i~~Lv--------~ 226 (315)
+. ..-.+.... ...++.+.+..... .+.......+..+..++. .. .....+.+. .+..+. .
T Consensus 547 ~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~ 624 (888)
T d1qbkb_ 547 ADSVGHHLNKPEYI-QMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQR-CVNLVQKTLAQAMLN 624 (888)
T ss_dssp HHHHGGGGCSHHHH-HHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHhhhccccchHHH-HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHH-HHHHHHHHHHHHHHH
Confidence 43 111222222 23455566555421 122333344445554432 11 111111111 011111 1
Q ss_pred HhhcC--CCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhh
Q 021242 227 LLDLG--TGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 227 ll~~~--~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
..... ...+......+..++..+...-.... ...+. ....++.+...+++.++.+|+.|..++..+..
T Consensus 625 ~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~-~~~~~-~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~ 694 (888)
T d1qbkb_ 625 NAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNI-EQLVA-RSNILTLMYQCMQDKMPEVRQSSFALLGDLTK 694 (888)
T ss_dssp HHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTT-HHHHH-TSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred hcccccccchhHHHHHHHHHHHHHHHHHhhhhh-hhhhh-HhhHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence 11110 11234556666667776664222122 23333 25677888888999999999999988876654
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.23 E-value=1.5e-07 Score=68.41 Aligned_cols=109 Identities=14% Similarity=0.129 Sum_probs=84.5
Q ss_pred hCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHH
Q 021242 15 LGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTRGLLDAIS 94 (315)
Q Consensus 15 L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~ 94 (315)
|+++++.+|..|+++|..+. ..+++.|+..|.+.++.++..|+++|.++. ..+.++.|+
T Consensus 1 L~D~~~~VR~~A~~aL~~~~------------~~~~~~L~~~l~d~~~~vR~~a~~~L~~~~---------~~~~~~~L~ 59 (111)
T d1te4a_ 1 MADENKWVRRDVSTALSRMG------------DEAFEPLLESLSNEDWRIRGAAAWIIGNFQ---------DERAVEPLI 59 (111)
T ss_dssp CCSSCCCSSSSCCSSTTSCS------------STTHHHHHHGGGCSCHHHHHHHHHHHGGGC---------SHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHhC------------HHHHHHHHHHHcCCCHHHHHHHHHHHHhcc---------hhhhHHHHH
Confidence 35556667777777665442 235899999999999999999999997764 344688999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHH
Q 021242 95 HVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALF 161 (315)
Q Consensus 95 ~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~ 161 (315)
.+|++ +++.++..++++|..+. . ...++.|..+++ +.++.++..|+.+|.
T Consensus 60 ~~l~d----~~~~VR~~a~~aL~~i~----------~-~~~~~~L~~ll~--d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 60 KLLED----DSGFVRSGAARSLEQIG----------G-ERVRAAMEKLAE--TGTGFARKVAVNYLE 109 (111)
T ss_dssp HHHHH----CCTHHHHHHHHHHHHHC----------S-HHHHHHHHHHTT--SCCTHHHHHHHHHGG
T ss_pred hhhcc----chhHHHHHHHHHHHHhC----------c-cchHHHHHHHHc--CCCHHHHHHHHHHHH
Confidence 99997 67899999999998752 2 244888999998 568899999988874
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.97 E-value=6.5e-06 Score=59.32 Aligned_cols=88 Identities=15% Similarity=0.142 Sum_probs=73.2
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhh
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLM 84 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i 84 (315)
...++.|+..|+++++.+|..|+++|..+... +++|.|+.+|++.++.++..|+.+|..+.
T Consensus 21 ~~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~~-----------~~~~~L~~~l~d~~~~VR~~a~~aL~~i~-------- 81 (111)
T d1te4a_ 21 DEAFEPLLESLSNEDWRIRGAAAWIIGNFQDE-----------RAVEPLIKLLEDDSGFVRSGAARSLEQIG-------- 81 (111)
T ss_dssp STTHHHHHHGGGCSCHHHHHHHHHHHGGGCSH-----------HHHHHHHHHHHHCCTHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcchh-----------hhHHHHHhhhccchhHHHHHHHHHHHHhC--------
Confidence 45689999999999999999999999876422 35899999999999999999999998763
Q ss_pred hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 021242 85 STRGLLDAISHVLRHHSTSTSSAAVQSSAATL 116 (315)
Q Consensus 85 ~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L 116 (315)
..+.++.|..++++ +++.++..|..+|
T Consensus 82 -~~~~~~~L~~ll~d----~~~~vr~~A~~aL 108 (111)
T d1te4a_ 82 -GERVRAAMEKLAET----GTGFARKVAVNYL 108 (111)
T ss_dssp -SHHHHHHHHHHTTS----CCTHHHHHHHHHG
T ss_pred -ccchHHHHHHHHcC----CCHHHHHHHHHHH
Confidence 34568888888987 6788888887765
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.93 E-value=0.00017 Score=68.66 Aligned_cols=279 Identities=10% Similarity=0.090 Sum_probs=153.9
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhcC
Q 021242 9 RSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTRG 88 (315)
Q Consensus 9 ~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~ 88 (315)
+.+...+.+.++..+..|+..+..++.........-.-...++.++..+.+.++.++..+++++..++..-..... ...
T Consensus 372 ~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-~~~ 450 (861)
T d2bpta1 372 EFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESID-PQQ 450 (861)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSC-TTT
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhchhhh-hHH
Confidence 3444555778889999999999988854322211111234688899999999999999999999888754322211 223
Q ss_pred chHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc--CCCchhhhh-hccccHHHHHHHhhccCCChHHHHHHHHHHHHhcc
Q 021242 89 LLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV--VDSYRPIIG-AKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL 165 (315)
Q Consensus 89 ~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~--~~~~~~~i~-~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~ 165 (315)
.++.++..+.... ..++.....+++++..+.. .+.....+. .....+..|+........+..++..+..++..+..
T Consensus 451 ~~~~ll~~l~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~ 529 (861)
T d2bpta1 451 HLPGVVQACLIGL-QDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVE 529 (861)
T ss_dssp THHHHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHhcc-ccChHHHHHHHHHHHHHHHHhhhcccchhhHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 3444433331100 1456777788888887763 222222221 11233555665554333445677778888877765
Q ss_pred C-CCcHHHHHhhCCcHHHHHHHh---cCCCc-----------chHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhh
Q 021242 166 Y-PLNRYQVIALGGVQPLFSLVV---NGGRA-----------GIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLD 229 (315)
Q Consensus 166 ~-~~~~~~i~~~g~v~~L~~lL~---~~~~~-----------~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~ 229 (315)
. ++...... ....+.+...+. ..... .+...++.++..+.. .+.....+. ...+..++..+.
T Consensus 530 ~~~~~~~~~~-~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~-~~l~~~l~~~l~ 607 (861)
T d2bpta1 530 YATDTVAETS-ASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFFRLLE 607 (861)
T ss_dssp HCCGGGHHHH-HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHHHH
T ss_pred HhHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHHHHH-HHHHHHHhhhcc
Confidence 2 32222211 112222222221 11111 111122233333221 111111110 112455566666
Q ss_pred cCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhC
Q 021242 230 LGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILVDD 297 (315)
Q Consensus 230 ~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~ 297 (315)
.. .+..+++.++.++..++...++.....+ ..++|.|...+++.++.++..|..++..+...
T Consensus 608 ~~--~~~~v~~~~l~~l~~l~~~~~~~~~~~l----~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~ 669 (861)
T d2bpta1 608 KK--DSAFIEDDVFYAISALAASLGKGFEKYL----ETFSPYLLKALNQVDSPVSITAVGFIADISNS 669 (861)
T ss_dssp ST--TGGGTHHHHHHHHHHHHHHHGGGGHHHH----HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHH
T ss_pred cC--CchhHHHHHHHHHHHHHHHhhHHHHHHH----HHHhhHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 53 3567888889999888875443333444 34788999999998889999999887766543
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.90 E-value=9.5e-05 Score=74.00 Aligned_cols=230 Identities=13% Similarity=0.129 Sum_probs=145.0
Q ss_pred hhhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcc----c
Q 021242 4 KRRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSSSHAFQENAAATLLNLSIT----S 79 (315)
Q Consensus 4 ~~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~----~ 79 (315)
-+..++.+++.|..+++++|..|+.+|..++..-++.. . ...++.|+..+.+.+...+..+..+|..+... .
T Consensus 43 ~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~---~-~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~ 118 (1207)
T d1u6gc_ 43 ERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQ---V-ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPAS 118 (1207)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHH---H-HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhh---H-HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhccccc
Confidence 34568899999999999999999999999986643321 1 23467777777777777888777777554322 1
Q ss_pred c-hhh--hhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc-CCCchhhhhhccccHHHHHHHhhccCCChHHHHH
Q 021242 80 R-DSL--MSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV-VDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKD 155 (315)
Q Consensus 80 ~-~~~--i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~ 155 (315)
. ..+ ......++.+...+.. ..+..++..+..+|..+.. ....-.. ....+++.|+..+. +.++.++..
T Consensus 119 ~~~~~~~~~~~~l~~~l~~~~~~---~~~~~v~~~al~~l~~l~~~~g~~l~~--~~~~il~~l~~~l~--~~~~~vR~~ 191 (1207)
T d1u6gc_ 119 SGSALAANVCKKITGRLTSAIAK---QEDVSVQLEALDIMADMLSRQGGLLVN--FHPSILTCLLPQLT--SPRLAVRKR 191 (1207)
T ss_dssp --CCTHHHHHHHHHHHHHHHHSC---CSCHHHHHHHHHHHHHHHHHTCSSCTT--THHHHHHHHGGGGG--CSSHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHhhcC---CCCHHHHHHHHHHHHHHHHHhhHhhHH--HHHHHHHHHHHHhC--CCCHHHHHH
Confidence 1 111 1122344555555554 2567788888888888874 3321111 11245777777777 457889999
Q ss_pred HHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcC-hhhHHHHHh--cCCHHHHHHHhhcCC
Q 021242 156 ALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGC-EESVDEFKK--CCGIGVLVDLLDLGT 232 (315)
Q Consensus 156 a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~--~~~i~~Lv~ll~~~~ 232 (315)
|+.+|..++..-... . -...++.+++.+..+.+...+..++.++..++.. +. .+.. ...++.+++.+...
T Consensus 192 A~~~l~~l~~~~~~~--~-~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~---~~~~~l~~i~~~l~~~l~~~- 264 (1207)
T d1u6gc_ 192 TIIALGHLVMSCGNI--V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH---RIGEYLEKIIPLVVKFCNVD- 264 (1207)
T ss_dssp HHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG---GGTTSCTTHHHHHHHHHSSC-
T ss_pred HHHHHHHHHHHCCHH--H-HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcch---hhHHHHHHHHHHHHHHhcCc-
Confidence 999999998632211 1 1234667777665444445555566666666542 11 1211 12368888888765
Q ss_pred CCChhHHHHHHHHHHHHhccC
Q 021242 233 GSGHRVKENAVSALLNLVNFG 253 (315)
Q Consensus 233 ~~~~~~~~~a~~~L~~l~~~~ 253 (315)
+..+++.+..++..++...
T Consensus 265 --~~~~r~~al~~l~~l~~~~ 283 (1207)
T d1u6gc_ 265 --DDELREYCIQAFESFVRRC 283 (1207)
T ss_dssp --CTTTHHHHHHHHHHHHHCT
T ss_pred --cHHHHHHHHHHHHHHHHhC
Confidence 7788999988888887543
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.79 E-value=0.00076 Score=64.00 Aligned_cols=265 Identities=10% Similarity=0.053 Sum_probs=162.4
Q ss_pred hHHHHHH-HhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCC--CHHHHHHHHHHHHhcCcccc-h-
Q 021242 7 TVRSLVT-KLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSS--SHAFQENAAATLLNLSITSR-D- 81 (315)
Q Consensus 7 ~i~~Lv~-~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~la~~~~-~- 81 (315)
.+.++++ .+.+++++.|..|-..|..+...++ .+.+..|+..+.+. +..+|..|+..|.|.-.... .
T Consensus 5 ~~~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~--------~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~ 76 (861)
T d2bpta1 5 EFAQLLENSILSPDQNIRLTSETQLKKLSNDNF--------LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVK 76 (861)
T ss_dssp HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCH--------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCc--------hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchh
Confidence 3444443 3578899999999999998875532 24677888888653 46788899999988765431 0
Q ss_pred ------hhh--h----hcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCC--CchhhhhhccccHHHHHHHhhccC
Q 021242 82 ------SLM--S----TRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVD--SYRPIIGAKRDIIHSLIEIIKTRN 147 (315)
Q Consensus 82 ------~~i--~----~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~--~~~~~i~~~~g~i~~Lv~ll~~~~ 147 (315)
.+. . .......++..+.+ +++.++..++.++..++..+ ++.+ ..+++.|+..+.+ +
T Consensus 77 ~~~~~~~~~~~i~~~~~~~ik~~ll~~l~~----~~~~vr~~~a~~i~~i~~~~~p~~~w-----peli~~L~~~~~s-~ 146 (861)
T d2bpta1 77 TQQFAQRWITQVSPEAKNQIKTNALTALVS----IEPRIANAAAQLIAAIADIELPHGAW-----PELMKIMVDNTGA-E 146 (861)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHTC----SSHHHHHHHHHHHHHHHHHHGGGTCC-----HHHHHHHHHHTST-T
T ss_pred hhhHHhhhHhcCCHHHHHHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHHhCCcCch-----HHHHHHHHHHhcC-C
Confidence 111 1 11234556667765 57888888999999887432 2211 2467888888874 2
Q ss_pred CChHHHHHHHHHHHHhccCCCcHH-HHHh--hCCcHHHHHHHhc-CCCcchHHHHHHHHHHHhcC-hhhHH-HHHhcCCH
Q 021242 148 SPLRSVKDALKALFGIALYPLNRY-QVIA--LGGVQPLFSLVVN-GGRAGIVEDASAVIAQIAGC-EESVD-EFKKCCGI 221 (315)
Q Consensus 148 ~~~~~~~~a~~aL~~Ls~~~~~~~-~i~~--~g~v~~L~~lL~~-~~~~~~~~~a~~~L~~L~~~-~~~~~-~i~~~~~i 221 (315)
.+...+..|+.+|..++..-.... .+.. ...+..++..+.+ +++..++..++.++.++... +..-. .......+
T Consensus 147 ~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 226 (861)
T d2bpta1 147 QPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLM 226 (861)
T ss_dssp SCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHH
Confidence 455677788999999875322211 1111 1223344444432 23456778888888887553 22111 01111235
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHH-HHHhhCCHHHHHHHHHHHHHHhh
Q 021242 222 GVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIA-DVAQNGSAKGKTKAVALLKILVD 296 (315)
Q Consensus 222 ~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~-~ll~~~~~~~k~~A~~~L~~l~~ 296 (315)
+.+...++.+ +..++..++.++..++....+.....+.+ .+..++ ...++.++.++..+..++..+..
T Consensus 227 ~~l~~~~~~~---~~~~~~~~~~~l~~i~~~~~~~~~~~l~~----~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~ 295 (861)
T d2bpta1 227 QVVCEATQAE---DIEVQAAAFGCLCKIMSKYYTFMKPYMEQ----ALYALTIATMKSPNDKVASMTVEFWSTICE 295 (861)
T ss_dssp HHHHHHHTCS---CHHHHHHHHHHHHHHHHHHGGGCHHHHHH----THHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HhHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 6666777765 78899999999999986443222223322 344443 44556789999998887766543
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.67 E-value=0.00027 Score=62.07 Aligned_cols=266 Identities=10% Similarity=0.037 Sum_probs=157.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCC--CHHHHHHHHHHHHhcCccc-c--hh
Q 021242 8 VRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSS--SHAFQENAAATLLNLSITS-R--DS 82 (315)
Q Consensus 8 i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~la~~~-~--~~ 82 (315)
+-.+++.+-++|.+.|..|-..|..+...++. +.++.|...+.+. +..+|..|+..|.|.-... . +.
T Consensus 2 l~~il~~~~s~d~~~r~~A~~~L~~~~~~~~~--------~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~ 73 (458)
T d1ibrb_ 2 LITILEKTVSPDRLELEAAQKFLERAAVENLP--------TFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKA 73 (458)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHH
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHHHhcCch--------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhh
Confidence 34566777789999999999999999865422 2467777777553 4678888888887754332 1 10
Q ss_pred hh----------hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHH
Q 021242 83 LM----------STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRS 152 (315)
Q Consensus 83 ~i----------~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~ 152 (315)
.. ........++..+.+ .+. .+..++.++..++....... .-..+++.++..+.++..+...
T Consensus 74 ~~~~~~~~l~~~~~~~i~~~ll~~~~~----~~~-~~~~~~~~~~~i~~~~~~~~---~~~~~~~~l~~~l~~~~~~~~~ 145 (458)
T d1ibrb_ 74 QYQQRWLAIDANARREVKNYVLQTLGT----ETY-RPSSASQCVAGIACAEIPVN---QWPELIPQLVANVTNPNSTEHM 145 (458)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHTTC----CCS-SSCSHHHHHHHHHHHHGGGT---CCTTHHHHHHHHHHCTTCCHHH
T ss_pred HHhhhhccCCHHHHHHHHHHHHhccCC----CcH-HHHHHHHHHHHHHHHhCCcc---cCcchhHHHHHHHHhhcchHHH
Confidence 00 122234445666654 221 22234444444443211111 1135689999988754456677
Q ss_pred HHHHHHHHHHhccCC-CcHHHHHhhCCcHHHHHHHhcC-CCcchHHHHHHHHHHHhcChhhHH--HHHhcCCHHHHHHHh
Q 021242 153 VKDALKALFGIALYP-LNRYQVIALGGVQPLFSLVVNG-GRAGIVEDASAVIAQIAGCEESVD--EFKKCCGIGVLVDLL 228 (315)
Q Consensus 153 ~~~a~~aL~~Ls~~~-~~~~~i~~~g~v~~L~~lL~~~-~~~~~~~~a~~~L~~L~~~~~~~~--~i~~~~~i~~Lv~ll 228 (315)
+..++.++..++... .....-.....++.++..+.+. ++..++..++..+.++........ ........+.+...+
T Consensus 146 ~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 225 (458)
T d1ibrb_ 146 KESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAT 225 (458)
T ss_dssp HHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHh
Confidence 778888888877532 2211111234466777777532 344678888888888865422111 111112345566666
Q ss_pred hcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 021242 229 DLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILV 295 (315)
Q Consensus 229 ~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~ 295 (315)
.+. +++++..++.+|..++....+.....+. ....+.+.....+.++.++..|...+..+.
T Consensus 226 ~~~---~~~~~~~~~~~l~~i~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~ 286 (458)
T d1ibrb_ 226 QCP---DTRVRVAALQNLVKIMSLYYQYMETYMG---PALFAITIEAMKSDIDEVALQGIEFWSNVC 286 (458)
T ss_dssp TCS---SHHHHHHHHHHHHHHHHHCGGGCTTTTT---TTHHHHHHHHHHCSSHHHHHHHHHHHHHHH
T ss_pred cCC---CHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 654 7889999999999998655422112221 223344456667788999999988777664
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.62 E-value=0.0089 Score=56.55 Aligned_cols=269 Identities=10% Similarity=0.061 Sum_probs=158.9
Q ss_pred hhHHHHHHHhCCC--CHHHHHHHHHHHHHHhccCchhhHHHHh--CCCHHHHHHHHcCC--CHHHHHHHHHHHHhcCccc
Q 021242 6 RTVRSLVTKLGSV--SEQTRAEALAELRLLSKHDAEIRPMISE--AGSIPYLAEILYSS--SHAFQENAAATLLNLSITS 79 (315)
Q Consensus 6 ~~i~~Lv~~L~~~--~~~~~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~la~~~ 79 (315)
.-++.+++.+.++ ++..+..++.+|..+++.-.. ..+.. ...++.++..+.+. +..++..|+.++.++....
T Consensus 128 eli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~--~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~ 205 (876)
T d1qgra_ 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT 205 (876)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHh
Confidence 4578888888655 467888899999988754221 12222 45678888888654 4678889999887765443
Q ss_pred ch---hhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc-CCC-chhhhhhccccHHHHHHHhhccCCChHHHH
Q 021242 80 RD---SLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV-VDS-YRPIIGAKRDIIHSLIEIIKTRNSPLRSVK 154 (315)
Q Consensus 80 ~~---~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~-~~~-~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~ 154 (315)
.. ......-.++.+...+.+ ++++++..++.++..+.. ..+ ....+.. .+.+.+..... ...+.+..
T Consensus 206 ~~~~~~~~~~~~i~~~l~~~~~~----~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~--~l~~~~~~~~~--~~~~~~~~ 277 (876)
T d1qgra_ 206 KANFDKESERHFIMQVVCEATQC----PDTRVRVAALQNLVKIMSLYYQYMETYMGP--ALFAITIEAMK--SDIDEVAL 277 (876)
T ss_dssp HHHHTSHHHHHHHHHHHHHHTTC----SSHHHHHHHHHHHHHHHHHSGGGCHHHHTT--THHHHHHHHHT--CSSHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHhc--cccHHHHH
Confidence 21 111122245556666665 678889999999988875 322 2222222 33445555555 45667777
Q ss_pred HHHHHHHHhccCC---------------------CcHHHHHhhCCcHHHHHHHhcC------CCcchHHHHHHHHHHHhc
Q 021242 155 DALKALFGIALYP---------------------LNRYQVIALGGVQPLFSLVVNG------GRAGIVEDASAVIAQIAG 207 (315)
Q Consensus 155 ~a~~aL~~Ls~~~---------------------~~~~~i~~~g~v~~L~~lL~~~------~~~~~~~~a~~~L~~L~~ 207 (315)
.++..+..++... ..-........++.+...+... .+..++..+..++..++.
T Consensus 278 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~ 357 (876)
T d1qgra_ 278 QGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLAT 357 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHH
Confidence 7776666655311 0001111122333444444211 122355666666766643
Q ss_pred ChhhHHHHHhcCCHHHHHH----HhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHH
Q 021242 208 CEESVDEFKKCCGIGVLVD----LLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKG 283 (315)
Q Consensus 208 ~~~~~~~i~~~~~i~~Lv~----ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~ 283 (315)
.. ....++.++. .+.+. +...++.++..+..+............+ ...++.+...+.++++.+
T Consensus 358 ~~-------~~~~~~~~~~~i~~~l~~~---~~~~r~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~l~~~l~d~~~~v 424 (876)
T d1qgra_ 358 CC-------EDDIVPHVLPFIKEHIKNP---DWRYRDAAVMAFGCILEGPEPSQLKPLV---IQAMPTLIELMKDPSVVV 424 (876)
T ss_dssp HH-------GGGGHHHHHHHHHHHTTCS---SHHHHHHHHHHHHHTSSSSCHHHHHHHH---HHHHHHHHHHHTCSSHHH
T ss_pred Hh-------hhhhhhhhHHHHHHhhccc---hHHHHHHHHHHHHhhhhhhhHHHHHHHH---HHHHHHHHHhhcCCccHH
Confidence 21 1123344444 44443 7788888888888876533333222222 347888899999999999
Q ss_pred HHHHHHHHHHHhhC
Q 021242 284 KTKAVALLKILVDD 297 (315)
Q Consensus 284 k~~A~~~L~~l~~~ 297 (315)
+..|.+++..+.+.
T Consensus 425 r~~a~~~l~~~~~~ 438 (876)
T d1qgra_ 425 RDTAAWTVGRICEL 438 (876)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888654
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.58 E-value=0.00084 Score=59.77 Aligned_cols=225 Identities=15% Similarity=0.118 Sum_probs=147.0
Q ss_pred CCCCHHHHHHHHHHHHHHhccCchhhHHHHh--CCCHHHHHHHHcC-----------------CCHHHHHHHHHHHHhcC
Q 021242 16 GSVSEQTRAEALAELRLLSKHDAEIRPMISE--AGSIPYLAEILYS-----------------SSHAFQENAAATLLNLS 76 (315)
Q Consensus 16 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~Lv~lL~~-----------------~~~~~~~~a~~~L~~la 76 (315)
.+++.+.+.-|+..+..+... ++.|..+.. ...+++|++.|+. ....++=.++-++|-|+
T Consensus 175 ~~~~~~~~~i~v~~lq~llr~-~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLS 253 (477)
T d1ho8a_ 175 NIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLT 253 (477)
T ss_dssp CTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHT
T ss_pred cccccchHHHHHHHHHHHhcC-ccHHHHHHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHH
Confidence 567778888899999988865 788988854 4568888888853 01245667888999999
Q ss_pred cccc-hhhhhhc--CchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCC--c----hhhhhhccccHHHHHHHhhccC
Q 021242 77 ITSR-DSLMSTR--GLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDS--Y----RPIIGAKRDIIHSLIEIIKTRN 147 (315)
Q Consensus 77 ~~~~-~~~i~~~--~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~--~----~~~i~~~~g~i~~Lv~ll~~~~ 147 (315)
++++ ...+.+. +.++.|+.+++. ...+.+...+..++.|+..... + ...+.. ++ +++++..|....
T Consensus 254 F~~~~~~~l~~~~~~~i~~l~~i~~~---s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~-~~-~l~~l~~L~~r~ 328 (477)
T d1ho8a_ 254 FNPVFANELVQKYLSDFLDLLKLVKI---TIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLL-GN-ALPTVQSLSERK 328 (477)
T ss_dssp TSHHHHHHHHTTSHHHHHHHHHHHHH---CCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHH-HC-HHHHHHHHHSSC
T ss_pred cCHHHHHHHHHhhhHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH-cc-hhHHHHHHhcCC
Confidence 9875 3333333 458899999985 3677788889999999986432 2 223344 35 456666665322
Q ss_pred -CChHHHHHHHHHHHH--------hcc---------------CCC---------cHHHHHhh--CCcHHHHHHHhc----
Q 021242 148 -SPLRSVKDALKALFG--------IAL---------------YPL---------NRYQVIAL--GGVQPLFSLVVN---- 188 (315)
Q Consensus 148 -~~~~~~~~a~~aL~~--------Ls~---------------~~~---------~~~~i~~~--g~v~~L~~lL~~---- 188 (315)
.|+++. ..+..|.. +++ +|. |..++-+. ..+..|+++|.+
T Consensus 329 ~~Dedl~-edl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~ 407 (477)
T d1ho8a_ 329 YSDEELR-QDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRN 407 (477)
T ss_dssp CSSHHHH-HHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHT
T ss_pred CCCHHHH-HHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccc
Confidence 344442 22222222 221 121 22222111 346778888852
Q ss_pred -----CCCcchHHHHHHHHHHHhc-ChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHh
Q 021242 189 -----GGRAGIVEDASAVIAQIAG-CEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSALLNLV 250 (315)
Q Consensus 189 -----~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~ 250 (315)
+.++.+..-||-=+..++. .|.+|..+.+.|+=..++.+|.+. ++.++.+|+.++-.+-
T Consensus 408 ~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~---d~~Vr~eAL~avQklm 472 (477)
T d1ho8a_ 408 GDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHS---DSRVKYEALKATQAII 472 (477)
T ss_dssp TCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCS---SHHHHHHHHHHHHHHH
T ss_pred cccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCC---CHHHHHHHHHHHHHHH
Confidence 1133445557777777877 689999998888878888899875 8999999998876653
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.49 E-value=0.00094 Score=63.62 Aligned_cols=266 Identities=11% Similarity=0.047 Sum_probs=161.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCC--CHHHHHHHHHHHHhcCccc-c--h-
Q 021242 8 VRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSS--SHAFQENAAATLLNLSITS-R--D- 81 (315)
Q Consensus 8 i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~la~~~-~--~- 81 (315)
+..+++..-++|.+.|..|-..|..+.+.++. |.+..|...+.+. +..+|..|+..|.|.-... + .
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~--------~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~ 74 (876)
T d1qgra_ 3 LITILEKTVSPDRLELEAAQKFLERAAVENLP--------TFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKA 74 (876)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHH
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHHHhcChh--------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchhh
Confidence 45666777788999999999999998765422 4677888888553 4678999999998865332 1 0
Q ss_pred ---h-h--h---hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHH
Q 021242 82 ---S-L--M---STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRS 152 (315)
Q Consensus 82 ---~-~--i---~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~ 152 (315)
. + + ........++..+.+ ++ ..+..++.++..++..+-..... .++++.|+..+.+++.+...
T Consensus 75 ~~~~~~~~i~~~~k~~ik~~ll~~l~~----~~-~~~~~~a~~i~~i~~~~~p~~~W---peli~~L~~~l~~~~~~~~~ 146 (876)
T d1qgra_ 75 QYQQRWLAIDANARREVKNYVLHTLGT----ET-YRPSSASQCVAGIACAEIPVNQW---PELIPQLVANVTNPNSTEHM 146 (876)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHTTT----CC-SSSCHHHHHHHHHHHHHGGGTCC---TTHHHHHHHHHHCTTCCHHH
T ss_pred hhhcccccCCHHHHHHHHHHHHHHhcC----Cc-HHHHHHHHHHHHHHHHHCCcccc---HHHHHHHHHHhcCCCCcHHH
Confidence 0 1 0 122234566777765 22 23345677777776432111111 36799999998754445677
Q ss_pred HHHHHHHHHHhccCCCcHHH-HHhhCCcHHHHHHHhcC-CCcchHHHHHHHHHHHhcC-hhhHH-HHHhcCCHHHHHHHh
Q 021242 153 VKDALKALFGIALYPLNRYQ-VIALGGVQPLFSLVVNG-GRAGIVEDASAVIAQIAGC-EESVD-EFKKCCGIGVLVDLL 228 (315)
Q Consensus 153 ~~~a~~aL~~Ls~~~~~~~~-i~~~g~v~~L~~lL~~~-~~~~~~~~a~~~L~~L~~~-~~~~~-~i~~~~~i~~Lv~ll 228 (315)
+..++.+|..++..-..... -.-...++.+++.+.+. ++..++..++.++.+.... ...-. .....-.+..+...+
T Consensus 147 ~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 226 (876)
T d1qgra_ 147 KESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAT 226 (876)
T ss_dssp HHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHh
Confidence 88899999988753222111 11134567778877532 3345677788877776442 21110 000111245555566
Q ss_pred hcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 021242 229 DLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALLKILV 295 (315)
Q Consensus 229 ~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~ 295 (315)
... +..++..++.+|..++....+.....+. ....+.+.....+..+.++..+...+..+.
T Consensus 227 ~~~---~~~v~~~~~~~l~~l~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~ 287 (876)
T d1qgra_ 227 QCP---DTRVRVAALQNLVKIMSLYYQYMETYMG---PALFAITIEAMKSDIDEVALQGIEFWSNVC 287 (876)
T ss_dssp TCS---SHHHHHHHHHHHHHHHHHSGGGCHHHHT---TTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred cCC---CHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 654 7889999999999998765433223331 334555566677778888888777655443
|
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Mo25 protein domain: Mo25 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.41 E-value=0.19 Score=41.70 Aligned_cols=199 Identities=14% Similarity=0.068 Sum_probs=146.8
Q ss_pred hhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCC-Cch----hhhhhccccHHHHHHHhhccCCChHHHHHHHHH
Q 021242 85 STRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVD-SYR----PIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKA 159 (315)
Q Consensus 85 ~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~-~~~----~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~a 159 (315)
...+.+..|+.-|.. -+-+.+..++.+..++-... ..+ .-+.....++..|+.-- +++++-..+-..
T Consensus 66 ~~~d~l~~Li~~L~~----L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gy----e~~eiAl~~G~m 137 (330)
T d1upka_ 66 YNSGLLSTLVADLQL----IDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY----ESPEIALNCGIM 137 (330)
T ss_dssp HHHSHHHHHHHTGGG----SCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG----GSTTTHHHHHHH
T ss_pred HHhChHHHHHHhCCC----CCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhc----CCcchhhhhhHH
Confidence 467888888888886 57899999999999988633 333 23333333344444433 356676778888
Q ss_pred HHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHH-hcChhhHHHHHhcC---CHHHHHHHhhcCCCCC
Q 021242 160 LFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQI-AGCEESVDEFKKCC---GIGVLVDLLDLGTGSG 235 (315)
Q Consensus 160 L~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L-~~~~~~~~~i~~~~---~i~~Lv~ll~~~~~~~ 235 (315)
|.....++...+.++....+..+.+.+. .++..+...|..+++.| +.++....++.+.. .+...-++|.++ +
T Consensus 138 LREcik~e~lak~iL~s~~f~~fF~yv~-~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~---N 213 (330)
T d1upka_ 138 LRECIRHEPLAKIILWSEQFYDFFRYVE-MSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE---N 213 (330)
T ss_dssp HHHHHTSHHHHHHHHHSGGGGHHHHHTT-CSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS---S
T ss_pred HHHHHhhHHHHHHHHccHHHHHHHHHHc-CCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCC---c
Confidence 8888888888889998888888999885 57888899999999988 45676777777654 466777788765 8
Q ss_pred hhHHHHHHHHHHHHhccCCHHHHHHHHHHc--cCcHHHHHHHHhhCCHHHHHHHHHHHHHHhhC
Q 021242 236 HRVKENAVSALLNLVNFGGERAAEEVKEMA--MQVADGIADVAQNGSAKGKTKAVALLKILVDD 297 (315)
Q Consensus 236 ~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~--~g~~~~L~~ll~~~~~~~k~~A~~~L~~l~~~ 297 (315)
--.|.+++..|..+-.... ...-|.++- ..-+..+..++++.+..++-.|=.+++.+...
T Consensus 214 YVtrRqSlKLLgelLldr~--N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVAN 275 (330)
T d1upka_ 214 YVTKRQSLKLLGELLLDRH--NFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN 275 (330)
T ss_dssp HHHHHHHHHHHHHHHHSGG--GHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHhhhh--HHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcC
Confidence 8899999999999986432 333443321 23467777899999999999999999988754
|
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Mo25 protein domain: Mo25 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.88 E-value=0.078 Score=44.14 Aligned_cols=196 Identities=11% Similarity=0.062 Sum_probs=139.9
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhh----HHHHh-CCCHHHHHHHHcCCCHHHHHHHHHHHHhcCccc
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIR----PMISE-AGSIPYLAEILYSSSHAFQENAAATLLNLSITS 79 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~----~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~ 79 (315)
.+.+..|+..|..-+.+.|..++....++.......+ +.+.. ..++..|+.-. .++++--.+-..|+.+..++
T Consensus 68 ~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gy--e~~eiAl~~G~mLREcik~e 145 (330)
T d1upka_ 68 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLRECIRHE 145 (330)
T ss_dssp HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHHHHTSH
T ss_pred hChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhc--CCcchhhhhhHHHHHHHhhH
Confidence 3456677888888889999999999999987766555 34443 23333333333 45566667778888888887
Q ss_pred c-hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc-CCCchhhhhh-c-cccHHHHHHHhhccCCChHHHHH
Q 021242 80 R-DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV-VDSYRPIIGA-K-RDIIHSLIEIIKTRNSPLRSVKD 155 (315)
Q Consensus 80 ~-~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~~-~-~g~i~~Lv~ll~~~~~~~~~~~~ 155 (315)
. .+++.....+..+.++.+. ++-++...|..++..|-. ++.....+-. . .-++...-.+|. +++.-.+..
T Consensus 146 ~lak~iL~s~~f~~fF~yv~~----~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~--s~NYVtrRq 219 (330)
T d1upka_ 146 PLAKIILWSEQFYDFFRYVEM----STFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLH--SENYVTKRQ 219 (330)
T ss_dssp HHHHHHHHSGGGGHHHHHTTC----SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTT--CSSHHHHHH
T ss_pred HHHHHHHccHHHHHHHHHHcC----CchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhc--CCchHHHHH
Confidence 6 5666677778888888886 788999899999998774 4332222222 1 245566667888 568889999
Q ss_pred HHHHHHHhccCCCcHHHHHh----hCCcHHHHHHHhcCCCcchHHHHHHHHHHHhcCh
Q 021242 156 ALKALFGIALYPLNRYQVIA----LGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCE 209 (315)
Q Consensus 156 a~~aL~~Ls~~~~~~~~i~~----~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~ 209 (315)
+++.|..+-.++.|...|.+ ..-+..++.+|+ +.+..++-.|..+......+|
T Consensus 220 SlKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLr-d~sk~Iq~EAFhVFKvFVANp 276 (330)
T d1upka_ 220 SLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLR-DKSRNIQFEAFHVFKVFVANP 276 (330)
T ss_dssp HHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTT-CSCHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhc-CchhhHHHHhhhHhhhhhcCC
Confidence 99999999999999887754 244666778885 567888888988888775543
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=94.74 E-value=0.0072 Score=48.83 Aligned_cols=162 Identities=10% Similarity=0.032 Sum_probs=83.3
Q ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHhcCcccchhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCch
Q 021242 47 AGSIPYLAEILYSSSHAFQENAAATLLNLSITSRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYR 126 (315)
Q Consensus 47 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~la~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~ 126 (315)
.-.++.|..++++.++.++..|+..| . .+.|..++.+ ++.+++..++.. |+
T Consensus 65 ~a~~~~L~~Ll~D~d~~VR~~AA~~L---p-------------~~~L~~L~~D----~d~~VR~~aa~~---l~------ 115 (233)
T d1lrva_ 65 YSPVEALTPLIRDSDEVVRRAVAYRL---P-------------REQLSALMFD----EDREVRITVADR---LP------ 115 (233)
T ss_dssp TSCGGGGGGGTTCSSHHHHHHHHTTS---C-------------SGGGGGTTTC----SCHHHHHHHHHH---SC------
T ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHc---C-------------HHHHHHHhcC----CChhHHHHHHhc---cC------
Confidence 34577888888888999988877543 1 2344555665 567777655532 21
Q ss_pred hhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcCCCcchHHHHHHHHHHHh
Q 021242 127 PIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIA 206 (315)
Q Consensus 127 ~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~~~~~~~~~a~~~L~~L~ 206 (315)
.+.|..++. +.+..++..+++.+ ..+.|..++. +++..++..+..
T Consensus 116 ---------~~~L~~Ll~--D~d~~VR~~aa~~~-----------------~~~~L~~L~~-D~d~~VR~~aA~------ 160 (233)
T d1lrva_ 116 ---------LEQLEQMAA--DRDYLVRAYVVQRI-----------------PPGRLFRFMR-DEDRQVRKLVAK------ 160 (233)
T ss_dssp ---------TGGGGGGTT--CSSHHHHHHHHHHS-----------------CGGGGGGTTT-CSCHHHHHHHHH------
T ss_pred ---------HHHHHHHhc--CCCHHHHHHHHhcc-----------------chhHHHHHhc-CCCHHHHHHHHH------
Confidence 133444555 44666666655421 1222333332 344444433221
Q ss_pred cChhhHHHHHhcCCHHHHHHHhhcCCCCChhHHHHHHHH-----HHHHhccCCHHHHHHHHHHccCcHHHHHHHHhhCCH
Q 021242 207 GCEESVDEFKKCCGIGVLVDLLDLGTGSGHRVKENAVSA-----LLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSA 281 (315)
Q Consensus 207 ~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~~~~~~~a~~~-----L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~~~~ 281 (315)
.-+.+.|..++++. ++.++..+... |..+..+.+..++....+ . ..+.++..+.++++
T Consensus 161 -----------~~~~~~L~~l~~D~---d~~VR~~aa~~L~~~~L~~l~~D~d~~VR~aaae--~-~~~~ll~~L~D~d~ 223 (233)
T d1lrva_ 161 -----------RLPEESLGLMTQDP---EPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVE--H-ASLEALRELDEPDP 223 (233)
T ss_dssp -----------HSCGGGGGGSTTCS---SHHHHHHHHHHCCGGGGGGGGGCSSHHHHHHHHH--H-SCHHHHHHCCCCCH
T ss_pred -----------hcCHHHHHHHccCC---CHHHHHHHHHhcCcHHHHHHHhCCCHHHHHHHHH--h-ccHHHHHHhCCCCH
Confidence 11223334444432 45555444432 223333333344445544 2 22445566777899
Q ss_pred HHHHHHHH
Q 021242 282 KGKTKAVA 289 (315)
Q Consensus 282 ~~k~~A~~ 289 (315)
.|++.|..
T Consensus 224 ~VR~aA~~ 231 (233)
T d1lrva_ 224 EVRLAIAG 231 (233)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99988763
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=94.46 E-value=0.0034 Score=50.86 Aligned_cols=63 Identities=16% Similarity=0.171 Sum_probs=33.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHH-----HHHhcc-CchhhHHHHhCCCHHHHHHHHcCCCHHHHHHHHH
Q 021242 8 VRSLVTKLGSVSEQTRAEALAEL-----RLLSKH-DAEIRPMISEAGSIPYLAEILYSSSHAFQENAAA 70 (315)
Q Consensus 8 i~~Lv~~L~~~~~~~~~~a~~~L-----~~l~~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~ 70 (315)
+..|..+++.+++++|..|+..| ..+..+ +...|..+.+.=..+.|..++.+.+..++..++.
T Consensus 68 ~~~L~~Ll~D~d~~VR~~AA~~Lp~~~L~~L~~D~d~~VR~~aa~~l~~~~L~~Ll~D~d~~VR~~aa~ 136 (233)
T d1lrva_ 68 VEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAADRDYLVRAYVVQ 136 (233)
T ss_dssp GGGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTTCSSHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHcCHHHHHHHhcCCChhHHHHHHhccCHHHHHHHhcCCCHHHHHHHHh
Confidence 44456666777777777766543 222222 1223444444333455666666666666665554
|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Lipovitellin-phosvitin complex, superhelical domain family: Lipovitellin-phosvitin complex, superhelical domain domain: Lipovitellin-phosvitin complex, superhelical domain species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
Probab=93.76 E-value=0.76 Score=38.51 Aligned_cols=249 Identities=12% Similarity=0.120 Sum_probs=127.3
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHhccCchhhHH----HHhCCC---HHHHHHHHcCCCHHHHHHHHHHHHhcCcc
Q 021242 6 RTVRSLVTKLGSVSEQTRAEALAELRLLSKHDAEIRPM----ISEAGS---IPYLAEILYSSSHAFQENAAATLLNLSIT 78 (315)
Q Consensus 6 ~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~----i~~~g~---i~~Lv~lL~~~~~~~~~~a~~~L~~la~~ 78 (315)
..+.+||+.|..-+.+.-......+ ...+..|.. +...|- +..+.+++.+...... .|...|..++..
T Consensus 43 ~kF~~Lv~~lR~~~~e~l~~v~~~~----~~~~~~r~~~lDal~~~GT~~a~~~i~~~I~~~~ls~~-ea~~~l~~l~~~ 117 (336)
T d1lsha1 43 AKFLRLTAFLRNVDAGVLQSIWHKL----HQQKDYRRWILDAVPAMATSEALLFLKRTLASEQLTSA-EATQIVASTLSN 117 (336)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHH----TTSHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH----hcChhHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCHH-HHHHHHHHHhcc
Confidence 3466788888877755444443332 233444443 333443 4556666655443222 234455455443
Q ss_pred cchhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc----CCCchhhhhhccccHHHHHHHhhcc--CCChHH
Q 021242 79 SRDSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLV----VDSYRPIIGAKRDIIHSLIEIIKTR--NSPLRS 152 (315)
Q Consensus 79 ~~~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~----~~~~~~~i~~~~g~i~~Lv~ll~~~--~~~~~~ 152 (315)
..+. ...+..+..+++++....++.++..+.-++..|.. ..+.+. ..+++.+...+... .++.+-
T Consensus 118 ~~Pt----~~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~-----~~~~~~l~~~l~~~~~~~~~~~ 188 (336)
T d1lsha1 118 QQAT----RESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCP-----DELLQPLHDLLSQSSDRAKEEE 188 (336)
T ss_dssp CCCC----HHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCC-----GGGTHHHHHHHHHHHHTTCHHH
T ss_pred CCCC----HHHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCCc-----HHHHHHHHHHHHHhhcccchHH
Confidence 3211 11355566666642111355666666655555542 222221 12244444444311 346666
Q ss_pred HHHHHHHHHHhccCCCcHHHHHhhCCcHHHHHHHhcC------CCcchHHHHHHHHHHHhcC-hhhHHHHHhcCCHHHHH
Q 021242 153 VKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNG------GRAGIVEDASAVIAQIAGC-EESVDEFKKCCGIGVLV 225 (315)
Q Consensus 153 ~~~a~~aL~~Ls~~~~~~~~i~~~g~v~~L~~lL~~~------~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~~i~~Lv 225 (315)
+..++++|+|+-. + +.++.+..++... ....++..|..+|+.++.. +... .+.++
T Consensus 189 ~~~~LkaLGN~g~-p---------~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~v--------~~~l~ 250 (336)
T d1lsha1 189 IVLALKALGNAGQ-P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV--------QEIVL 250 (336)
T ss_dssp HHHHHHHHHHHTC-G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH--------HHHHH
T ss_pred HHHHHHHHhccCC-H---------hHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHHH--------HHHHH
Confidence 6788999999753 3 3456666666421 1123567788888887653 2111 13445
Q ss_pred HHhhcCCCCChhHHHHHHHHHHHHhccCCHHHHHHHHHHccCcHHHHHHHHhh-CCHHHHHHHHHHHHHHhhCCCC
Q 021242 226 DLLDLGTGSGHRVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQN-GSAKGKTKAVALLKILVDDGNM 300 (315)
Q Consensus 226 ~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~i~~~~~g~~~~L~~ll~~-~~~~~k~~A~~~L~~l~~~~~~ 300 (315)
.++.+. ..+.++|-.|..+|.. |. .+.. .+..+...+.. .+..|.......|++++++.++
T Consensus 251 ~i~~n~-~e~~EvRiaA~~~lm~-t~-P~~~-----------~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s~~P 312 (336)
T d1lsha1 251 PIFLNV-AIKSELRIRSCIVFFE-SK-PSVA-----------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP 312 (336)
T ss_dssp HHHHCT-TSCHHHHHHHHHHHHH-TC-CCHH-----------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred HHHcCC-CCChHHHHHHHHHHHh-cC-CCHH-----------HHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCCc
Confidence 555543 2467788777666655 21 2211 12233444444 3667777777777777766554
|
| >d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Diap1 N-terninal region-like domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.82 E-value=3 Score=34.71 Aligned_cols=174 Identities=12% Similarity=0.129 Sum_probs=105.5
Q ss_pred HHHhCCC-CHHHHHHHHHHHHHHhccCchhh-HHHHhCCCHHHHHHHHcC---------C--CHHHHHHHHHHHHhcCcc
Q 021242 12 VTKLGSV-SEQTRAEALAELRLLSKHDAEIR-PMISEAGSIPYLAEILYS---------S--SHAFQENAAATLLNLSIT 78 (315)
Q Consensus 12 v~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~-~~i~~~g~i~~Lv~lL~~---------~--~~~~~~~a~~~L~~la~~ 78 (315)
|..|+++ ..+.....+..|+.-...++-.+ +.+ .++|+..|+.+|.. . +...+..++.+|..+...
T Consensus 8 v~~l~~~~~~~~~~~~L~sL~v~Lrt~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~ 86 (343)
T d2bnxa1 8 IQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN 86 (343)
T ss_dssp HHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHhcCCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhcc
Confidence 4444444 23434444555553344444444 455 56778889888841 1 244677788888888766
Q ss_pred cc--hhhhhhcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCC---ch----------hhhhhccccHHHHHHHh
Q 021242 79 SR--DSLMSTRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDS---YR----------PIIGAKRDIIHSLIEII 143 (315)
Q Consensus 79 ~~--~~~i~~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~---~~----------~~i~~~~g~i~~Lv~ll 143 (315)
.. ..++..++++..|...|.+ +.+.++..+..+|..++...+ +- ....+. +-+.++++.+
T Consensus 87 ~~G~~~vl~~~~~i~~l~~~L~s----~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~-~RF~~lv~~l 161 (343)
T d2bnxa1 87 KFGIKTMLETEEGILLLVRAMDP----AVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEV-ERFQPLLDGL 161 (343)
T ss_dssp HHHHHHHHHSSSHHHHHHHTCCT----TSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTS-CTTHHHHHHT
T ss_pred HHHHHHHHcChHHHHHHHHccCC----CchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCC-CcHHHHHHHH
Confidence 53 5567788899999998886 688899999999988885432 21 112222 3367888888
Q ss_pred hccCCChHHHHHHHHHHHHhccCCCc-------HHHHHhhCCcHHHHHHHhcCCCcc
Q 021242 144 KTRNSPLRSVKDALKALFGIALYPLN-------RYQVIALGGVQPLFSLVVNGGRAG 193 (315)
Q Consensus 144 ~~~~~~~~~~~~a~~aL~~Ls~~~~~-------~~~i~~~g~v~~L~~lL~~~~~~~ 193 (315)
+. .++.+.+..++..+-.|..+++. |..+...|.. .+++.|+...++.
T Consensus 162 ~~-~~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~Gl~-~il~~l~~~~~~~ 216 (343)
T d2bnxa1 162 KS-GTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH-QVLQELREIENED 216 (343)
T ss_dssp ST-TSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHH-HHHHHHTTCCCHH
T ss_pred hc-cccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHCChH-HHHHHHHccCChH
Confidence 74 24556666666555555555432 3344455544 5566665333333
|
| >d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Diap1 N-terninal region-like domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.76 E-value=2.2 Score=35.60 Aligned_cols=149 Identities=13% Similarity=0.176 Sum_probs=98.9
Q ss_pred cccHHHHHHHhhcc-------C--CChHHHHHHHHHHHHhccCCCcHHHHHh-hCCcHHHHHHHhcCCCcchHHHHHHHH
Q 021242 133 RDIIHSLIEIIKTR-------N--SPLRSVKDALKALFGIALYPLNRYQVIA-LGGVQPLFSLVVNGGRAGIVEDASAVI 202 (315)
Q Consensus 133 ~g~i~~Lv~ll~~~-------~--~~~~~~~~a~~aL~~Ls~~~~~~~~i~~-~g~v~~L~~lL~~~~~~~~~~~a~~~L 202 (315)
.| +..|+.+|..- . .+......++++|..+..+......++. .+++..+...+. .++..++..|+.+|
T Consensus 45 ~G-~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~-s~~~~tr~~a~elL 122 (343)
T d2bnxa1 45 EG-LASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMD-PAVPNMMIDAAKLL 122 (343)
T ss_dssp HH-HHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCC-TTSHHHHHHHHHHH
T ss_pred cc-HHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 46 67777776421 1 1234667788999998887777777766 488888888885 46777888899999
Q ss_pred HHHhcC---hhhHHHHHh----------cCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccCCH-----HHHHHHHHH
Q 021242 203 AQIAGC---EESVDEFKK----------CCGIGVLVDLLDLGTGSGHRVKENAVSALLNLVNFGGE-----RAAEEVKEM 264 (315)
Q Consensus 203 ~~L~~~---~~~~~~i~~----------~~~i~~Lv~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~-----~~~~~i~~~ 264 (315)
..+|.. +.|...+.+ .+-...++..++.+ .+...+-.++..+..+.....+ ..+.++..
T Consensus 123 ~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~--~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~- 199 (343)
T d2bnxa1 123 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG--TSIALKVGCLQLINALITPAEELDFRVHIRSELMR- 199 (343)
T ss_dssp HHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTT--SCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH-
T ss_pred HHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhcc--ccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHH-
Confidence 999864 234444432 12367888888764 3567777777777777764433 23456665
Q ss_pred ccCcHHHHHHHHhhCCHHHHHHH
Q 021242 265 AMQVADGIADVAQNGSAKGKTKA 287 (315)
Q Consensus 265 ~~g~~~~L~~ll~~~~~~~k~~A 287 (315)
.|..+.+-.+-..+++.....-
T Consensus 200 -~Gl~~il~~l~~~~~~~L~~Qi 221 (343)
T d2bnxa1 200 -LGLHQVLQELREIENEDMKVQL 221 (343)
T ss_dssp -TTHHHHHHHHTTCCCHHHHHHH
T ss_pred -CChHHHHHHHHccCChHHHHHH
Confidence 7777666666555677665433
|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Lipovitellin-phosvitin complex, superhelical domain family: Lipovitellin-phosvitin complex, superhelical domain domain: Lipovitellin-phosvitin complex, superhelical domain species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
Probab=84.71 E-value=9.2 Score=31.40 Aligned_cols=125 Identities=13% Similarity=0.101 Sum_probs=81.2
Q ss_pred HHhCCCCHHHHHHHHHHHHHHhccCchhhHHHHhCCCHHHHHHHHcCC-------CHHHHHHHHHHHHhcCcccchhhhh
Q 021242 13 TKLGSVSEQTRAEALAELRLLSKHDAEIRPMISEAGSIPYLAEILYSS-------SHAFQENAAATLLNLSITSRDSLMS 85 (315)
Q Consensus 13 ~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~-------~~~~~~~a~~~L~~la~~~~~~~i~ 85 (315)
+.++..+.+.+..++.+|.|... + +.++.|..++.+. ...++..|+++|.+++...++.
T Consensus 179 ~~~~~~~~~~~~~~LkaLGN~g~--p---------~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~--- 244 (336)
T d1lsha1 179 QSSDRAKEEEIVLALKALGNAGQ--P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK--- 244 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTC--G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH---
T ss_pred HhhcccchHHHHHHHHHHhccCC--H---------hHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHH---
Confidence 33445666667777777777752 2 2477777777542 3578999999998887654322
Q ss_pred hcCchHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhccccHHHHHHHhhccCCChHHHHHHHHHHHHhcc
Q 021242 86 TRGLLDAISHVLRHHSTSTSSAAVQSSAATLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIAL 165 (315)
Q Consensus 86 ~~~~i~~L~~lL~~~~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ll~~~~~~~~~~~~a~~aL~~Ls~ 165 (315)
..+.++.++.+. ..+.++|..|...|.. ..+. ...+..+...+.. +.+.++.......|.+++.
T Consensus 245 ---v~~~l~~i~~n~--~e~~EvRiaA~~~lm~--t~P~--------~~~l~~i~~~l~~-E~~~QV~sfv~S~l~~la~ 308 (336)
T d1lsha1 245 ---VQEIVLPIFLNV--AIKSELRIRSCIVFFE--SKPS--------VALVSMVAVRLRR-EPNLQVASFVYSQMRSLSR 308 (336)
T ss_dssp ---HHHHHHHHHHCT--TSCHHHHHHHHHHHHH--TCCC--------HHHHHHHHHHHTT-CSCHHHHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHcCC--CCChHHHHHHHHHHHh--cCCC--------HHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHh
Confidence 245566777643 3678888877766654 2221 1235666776664 4577888888899999987
Q ss_pred CC
Q 021242 166 YP 167 (315)
Q Consensus 166 ~~ 167 (315)
+.
T Consensus 309 s~ 310 (336)
T d1lsha1 309 SS 310 (336)
T ss_dssp CC
T ss_pred CC
Confidence 43
|
| >d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.20 E-value=1.8 Score=31.23 Aligned_cols=72 Identities=17% Similarity=0.154 Sum_probs=59.6
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhcc-CchhhHHHHhCCCHHHHHHHHcC------CCHHHHHHHHHHHHhcC
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKH-DAEIRPMISEAGSIPYLAEILYS------SSHAFQENAAATLLNLS 76 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~Lv~lL~~------~~~~~~~~a~~~L~~la 76 (315)
+..+..+-..|+++++.++..|+..|-.+.+. .+.-...+...+++..|+++++. .++.++...+..+..-+
T Consensus 44 k~a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~ 122 (145)
T d1ujka_ 44 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 122 (145)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHH
Confidence 45677788889999999999999999999987 36677888889999999999963 45689998888885544
|
| >d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.61 E-value=1.9 Score=31.11 Aligned_cols=73 Identities=15% Similarity=0.182 Sum_probs=59.3
Q ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHhccC-chhhHHHHhCCCHHHHHHHHcC------CCHHHHHHHHHHHHhcCc
Q 021242 5 RRTVRSLVTKLGSVSEQTRAEALAELRLLSKHD-AEIRPMISEAGSIPYLAEILYS------SSHAFQENAAATLLNLSI 77 (315)
Q Consensus 5 ~~~i~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~~------~~~~~~~~a~~~L~~la~ 77 (315)
+..+..+-..|++++|.++..|+..|-.+.++. +.-...+....++..|++++.. .++.++..++..+...+.
T Consensus 37 k~a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~ 116 (143)
T d1mhqa_ 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (143)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 456777888899999999999999999998874 5567788888899999999863 467899999998865543
|