Citrus Sinensis ID: 021283

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310----
Protein Sequence
MESEEGLRQQLEELQKQLGKKLRFEDSVANINSLLRDRFPAASPTLRNQFYSVVCRVATILKTRYTAPGFWLAGLRLFELAESLVSDPSQKQHLKACIAKAKEHLHEIDNAPEASEATYNTTNRGYLFEGHLTVDPEPPQPQWLVQANLMNAVASLSSTAESSRGLAESINTSETVANLFQELVNNLDDVIPEILETDSATPRVPPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYESWKEREKEAQEERKGAANAVRGGEYMYV
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHccccEEEcHHHHHcccccccccEEccccccccEEEEcccccccccccHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHccHcHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccHcccccHHHHHHHHHHccccccccccccHHHHHcccEEEEEHHHHHHccccccccEEHHHcccccHHcccccccccccccEHHHHHHccccccEEEEcccccccHHHcccccHHHHcccccHHHcccccEEEEc
Coil and Loop (DISEMBL)
MESEEGLRQQLEELQKQLGKKLRFEDSVANINSLLrdrfpaasptlrnQFYSVVCRVATILKtrytapgfwlAGLRLFELAEslvsdpsqKQHLKACIAKAKEHLheidnapeaseatynttnrgylfeghltvdpeppqpqwLVQANLMNAVASLSSTAESSRGLAESINTSETVANLFQELVNNLDDVipeiletdsatprvppaskevvaklpvITLTEEILDKLghdaecaickenllvgdkmqelpckhtfhppclkpwldehnscpicrhelqtddhAYESWKEREKEAQEERKGAAnavrggeymyv
Flexible Loop (DISEMBL)
MESEEGLRQQLEELQKQLGKKLRFEDSVANINSLLRdrfpaasptlrnqfYSVVCRVATILKTRYTAPGFWLAGLRLFELAESLVSDPSQKQHLKACIAKAKEHLHEidnapeaseatYNTTNRGYLFEGHLTVDPEPPQPQWLVQANLMNAVASLSSTAESSRGLAESINTSETVANLFQELVNNLDDVIPEILEtdsatprvppaskevvaklpvITLTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYESWKEREKEAQeerkgaanavrggeymyv
Low Complexity Region (SEG)
MESeeglrqqleelqkqlgkklrFEDSVANINSLLRDRFPAASPTLRNQFYSVVCRVATILKTRYTAPGFWLAGLRLFELAESLVSDPSQKQHLKACIAKAKEHLHEIDNAPEASEATYNTTNRGYLFEGHLTVDPEPPQPQWLVQANLMNAVASLSSTAESSRGLAESINTSETVANLFQELVNNLDDVIPEILETDSATPRVPPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYESWkerekeaqeerkgaaNAVRGGEYMYV
Disordered region (IsUnstruct)
**************************SVANINSLLRDRFPAASPTLRNQFYSVVCRVATILKTRYTAPGFWLAGLRLFELAESLV********LKACIAKA*****************YNTTNRGYLFEGHLTV*******QWLVQANLMNA**********************TVANLFQELVNNLDDVIPEILE*************EVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQT**********************************
Disordered Region (DISOPRED)
****************************ANINSL****************YSVVCRVATILKTRYTAPGFWLAGLRLF************************************************************************************************TVANLFQELVNNLDDVIP******************VVAKLPVITLTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQ********************************M*V
Disordered Region (DISEMBL)
*********QLEELQKQLGKKLRFEDSVANINSLLRDRFPAASPTLRNQFYSVVCRVATILKTRYTAPGFWLAGLRLFELAESLVSDPSQKQHLKACIAKAKEHLHEIDNAPEASEATYNTTNRGYLFEGHLTVDPEPPQPQWLVQANLMNAVAS*************SINTSETVANLFQELVNNLDDVIPEILETDSATPRVPPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYES***************ANAVRGGEYMYV
Disordered Region (DISPRO)
****EGLRQQLEELQKQLGKKLRFEDSVANINSLLRDRFPAASPTLRNQFYSVVCRVATILKTRYTAPGFWLAGLRLFELAESLVSDPSQKQHLKACIAKAKEHLH******************GYLFEGHLTVDPEPPQPQWLVQANLMNAVASLSSTAESSRGLAESINTSETVANLFQELVNNLDDVIPEILETDSATPRVPPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDD************************RGG*Y*YV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESEEGLRQQLEELQKQLGKKLRFEDSVANINSLLRDRFPAASPTLRNQFYSVVCRVATILKTRYTAPGFWLAGLRLFELAESLVSDPSQKQHLKACIAKAKEHLHEIDNAPEASEATYNTTNRGYLFEGHLTVDPEPPQPQWLVQANLMNAVASLSSTAESSRGLAESINTSETVANLFQELVNNLDDVIPEILETDSATPRVPPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAxxxxxxxxxxxxxxxxxxxxxVRGGEYMYV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	314	2.2.26 [Sep-21-2011]
Q8RXD3	310	E3 ubiquitin-protein liga	yes	no	0.945	0.958	0.694	1e-114
P0CH30	338	E3 ubiquitin-protein liga	N/A	no	0.350	0.325	0.4	7e-19
Q8LPN7	328	E3 ubiquitin-protein liga	no	no	0.315	0.301	0.415	2e-18
Q6DIP3	311	RING finger protein 126 O	yes	no	0.308	0.311	0.405	4e-17
Q91YL2	313	RING finger protein 126 O	yes	no	0.308	0.309	0.405	5e-17
Q7T0Q3	312	RING finger protein 126-A	N/A	no	0.308	0.310	0.405	8e-17
Q6IRP0	312	RING finger protein 126-B	N/A	no	0.308	0.310	0.396	9e-17
Q6GPV5	156	E3 ubiquitin-protein liga	N/A	no	0.328	0.660	0.411	2e-16
Q9BV68	326	RING finger protein 126 O	yes	no	0.308	0.297	0.396	2e-16
Q0II22	313	RING finger protein 126 O	no	no	0.315	0.316	0.388	3e-16

>sp|Q8RXD3|AIP2_ARATH E3 ubiquitin-protein ligase AIP2 OS=Arabidopsis thaliana GN=AIP2 PE=1 SV=1

 Score =  411 bits (1057), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 214/308 (69%), Positives = 247/308 (80%), Gaps = 11/308 (3%)

Query: 7   LRQQLEELQKQLGKKLRFEDSVANINSLLRDRFPAASPTLRNQFYSVVCRVATILKTRYT 66
           L+ +L++LQKQL KKLRFE SV +I++LLRD + ++SP+LR QFY VV RVAT+LKTRYT
Sbjct: 14  LKLELDDLQKQLNKKLRFEASVCSIHNLLRDHYSSSSPSLRKQFYIVVSRVATVLKTRYT 73

Query: 67  APGFWLAGLRLFELAESLVSDPSQKQHLKACIAKAKEHLHEIDNAPEASEATYNTTNRGY 126
           A GFW+AGL LFE AE LVSD S+K+HLK+C+A+AKE L E+DN P  S       ++GY
Sbjct: 74  ATGFWVAGLSLFEEAERLVSDASEKKHLKSCVAQAKEQLSEVDNQPTES-------SQGY 126

Query: 127 LFEGHLTVDPEPPQPQWLVQANLMNAVASLSSTAESSRGLAESINTSETVANLFQELVNN 186
           LFEGHLTVD EPPQPQWLVQ NLM+A AS+    ESS G  E  NT    ANL QEL+N 
Sbjct: 127 LFEGHLTVDREPPQPQWLVQQNLMSAFASIVG-GESSNGPTE--NTIGETANLMQELING 183

Query: 187 LDDVIPEILETDSATPRVPPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDK 246
           LD +IP+IL+ D   PR PPASKEVV KLPVI  TEE+L K G +AEC ICKENL++GDK
Sbjct: 184 LDMIIPDILD-DGGPPRAPPASKEVVEKLPVIIFTEELLKKFGAEAECCICKENLVIGDK 242

Query: 247 MQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYESWKEREKEAQEERKGAANAV 306
           MQELPCKHTFHPPCLKPWLDEHNSCPICRHEL TDD  YE+WKEREKEA+EERKGA NAV
Sbjct: 243 MQELPCKHTFHPPCLKPWLDEHNSCPICRHELPTDDQKYENWKEREKEAEEERKGAENAV 302

Query: 307 RGGEYMYV 314
           RGGEYMYV
Sbjct: 303 RGGEYMYV 310

E3 ubiquitin-protein ligase that acts as a negative regulator of abscisic acid (ABA) signaling. Mediates ubiquitination and subsequent proteasomal degradation of the transcription factor ABI3.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|P0CH30|RING1_GOSHI E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=2 SV=1

 Score = 95.1 bits (235), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 68/115 (59%), Gaps = 5/115 (4%)

Query: 187 LDDVIPEILETDSATPRVPPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDK 246
           L+ +I ++ E D      PPASK  +  LP++ +T+  L+      +CA+C ++   G +
Sbjct: 179 LEQLIQQLAENDPNRYGTPPASKSAIEALPLVNITKSNLNS--EFNQCAVCMDDFEEGTE 236

Query: 247 MQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYESWKEREKEAQEERKG 301
            +++PCKH +H  CL PWL+ HNSCP+CRHEL TDD  YE    R + AQ    G
Sbjct: 237 AKQMPCKHLYHKDCLLPWLELHNSCPVCRHELPTDDPDYE---RRVRGAQGTSGG 288

E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Promotes polyubiquitination of target proteins.

Gossypium hirsutum (taxid: 3635)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8LPN7|RNG1L_ARATH E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=2 SV=1

 Score = 93.6 bits (231), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 42/101 (41%), Positives = 63/101 (62%), Gaps = 2/101 (1%)

Query: 187 LDDVIPEILETDSATPRVPPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDK 246
           L+ +I ++ E D      PPASK  +  LP + +T+++L    +  +CA+C +    G  
Sbjct: 171 LEQLIQQLAENDPNRYGTPPASKSAIDALPTVKVTKDMLKSEMN--QCAVCMDEFEDGSD 228

Query: 247 MQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYES 287
           ++++PCKH FH  CL PWL+ HNSCP+CR EL TDD  YE+
Sbjct: 229 VKQMPCKHVFHQDCLLPWLELHNSCPVCRFELPTDDPDYEN 269

E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Promotes polyubiquitination of target proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6DIP3|RN126_XENTR RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1

 Score = 89.0 bits (219), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 60/101 (59%), Gaps = 4/101 (3%)

Query: 184 VNNLDDVIPEILETDSATPRVPPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLV 243
            N LD +I ++L     T   PPA  E +  LP I +TEE    +G   EC +CKE+  V
Sbjct: 181 ANGLDTIITQLLNQFENT-GPPPADTEKIQALPTIQITEE---HVGSGLECPVCKEDYTV 236

Query: 244 GDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHA 284
           G+ +++LPC H FH  C+ PWL++H++CP+CR  L   + A
Sbjct: 237 GESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSLSGQNTA 277

Xenopus tropicalis (taxid: 8364)

>sp|Q91YL2|RN126_MOUSE RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1

 Score = 89.0 bits (219), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 61/101 (60%), Gaps = 4/101 (3%)

Query: 184 VNNLDDVIPEILETDSATPRVPPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLV 243
            N LD +I ++L     T   PPA KE +  LP + +TEE    +G   EC +CKE+  +
Sbjct: 185 ANGLDTIITQLLNQFENT-GPPPADKEKIQALPTVPVTEE---HVGSGLECPVCKEDYAL 240

Query: 244 GDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHA 284
           G+ +++LPC H FH  C+ PWL++H+SCP+CR  L   + A
Sbjct: 241 GESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTA 281

Mus musculus (taxid: 10090)

>sp|Q7T0Q3|R126A_XENLA RING finger protein 126-A OS=Xenopus laevis GN=rnf126-a PE=2 SV=1

 Score = 88.2 bits (217), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 60/101 (59%), Gaps = 4/101 (3%)

Query: 184 VNNLDDVIPEILETDSATPRVPPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLV 243
            N LD +I ++L     T   PPA  E +  LP I +TEE    +G   EC +CKE+  V
Sbjct: 182 ANGLDTIITQLLNQFENT-GPPPADNEKIQALPTIQITEE---HVGSGLECPVCKEDYTV 237

Query: 244 GDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHA 284
           G+ +++LPC H FH  C+ PWL++H++CP+CR  L   + A
Sbjct: 238 GECVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSLSGQNTA 278

Xenopus laevis (taxid: 8355)

>sp|Q6IRP0|R126B_XENLA RING finger protein 126-B OS=Xenopus laevis GN=rnf126-b PE=2 SV=1

 Score = 87.8 bits (216), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 40/101 (39%), Positives = 60/101 (59%), Gaps = 4/101 (3%)

Query: 184 VNNLDDVIPEILETDSATPRVPPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLV 243
            N LD +I ++L     T   PPA  + +  LP I +TEE    +G   EC +CKE+  V
Sbjct: 182 ANGLDTIITQLLNQFENT-GPPPADTDKIQALPTIQITEE---HVGFGLECPVCKEDYTV 237

Query: 244 GDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHA 284
           G+ +++LPC H FH  C+ PWL++H++CP+CR  L   + A
Sbjct: 238 GESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSLSGQNTA 278

Xenopus laevis (taxid: 8355)

>sp|Q6GPV5|RN181_XENLA E3 ubiquitin-protein ligase RNF181 OS=Xenopus laevis GN=rnf181 PE=2 SV=1

 Score = 87.0 bits (214), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/107 (41%), Positives = 65/107 (60%), Gaps = 4/107 (3%)

Query: 205 PPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPW 264
           PPASK+VV  LP +T+T E  D      +C +C      G+ +++LPC+H FH  C+ PW
Sbjct: 53  PPASKKVVESLPKVTVTPEQADAA---LKCPVCLLEFEEGETVRQLPCEHLFHSACILPW 109

Query: 265 LDEHNSCPICRHELQTDDHAYESWKEREKEAQEERKGAANAVRGGEY 311
           L + NSCP+CRHEL TD   YE +K+ EK  +++++     + G  Y
Sbjct: 110 LGKTNSCPLCRHELPTDSPDYEEFKQ-EKARRQQKEHRLECLHGAMY 155

E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9BV68|RN126_HUMAN RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1

 Score = 87.0 bits (214), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 40/101 (39%), Positives = 62/101 (61%), Gaps = 4/101 (3%)

Query: 184 VNNLDDVIPEILETDSATPRVPPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLV 243
            N LD +I ++L     T   PPA KE +  LP + +TEE    +G   EC +CK++  +
Sbjct: 183 ANGLDAIITQLLNQFENT-GPPPADKEKIQALPTVPVTEE---HVGSGLECPVCKDDYAL 238

Query: 244 GDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHA 284
           G+++++LPC H FH  C+ PWL++H+SCP+CR  L   + A
Sbjct: 239 GERVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSLTGQNTA 279

Homo sapiens (taxid: 9606)

>sp|Q0II22|RN126_BOVIN RING finger protein 126 OS=Bos taurus GN=RNF126 PE=2 SV=1

 Score = 86.3 bits (212), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 62/103 (60%), Gaps = 4/103 (3%)

Query: 184 VNNLDDVIPEILETDSATPRVPPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLV 243
            N LD +I ++L     T   PPA KE +  LP + +TEE    +G   EC +CK++  +
Sbjct: 186 ANGLDAIITQLLNQFENT-GPPPADKEKIQALPTVPVTEE---HVGSGLECPVCKDDYGL 241

Query: 244 GDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYE 286
           G+ +++LPC H FH  C+ PWL++H+SCP+CR  L   + A +
Sbjct: 242 GEHVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSLTGQNTATD 284

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	314
356563970	313	PREDICTED: E3 ubiquitin-protein ligase A	0.996	1.0	0.697	1e-121
255637845	313	unknown [Glycine max]	0.996	1.0	0.694	1e-120
356563972	308	PREDICTED: E3 ubiquitin-protein ligase A	0.980	1.0	0.700	1e-120
356552445	313	PREDICTED: E3 ubiquitin-protein ligase A	0.996	1.0	0.691	1e-120
356552447	313	PREDICTED: E3 ubiquitin-protein ligase A	0.996	1.0	0.691	1e-119
388506224	313	unknown [Medicago truncatula]	0.996	1.0	0.691	1e-119
224088631	307	predicted protein [Populus trichocarpa]	0.968	0.990	0.701	1e-117
225429746	317	PREDICTED: E3 ubiquitin-protein ligase A	0.990	0.981	0.710	1e-116
255550245	303	zinc finger protein, putative [Ricinus c	0.907	0.940	0.716	1e-115
296081746	293	unnamed protein product [Vitis vinifera]	0.923	0.989	0.706	1e-114

>gi|356563970|ref|XP_003550230.1| PREDICTED: E3 ubiquitin-protein ligase AIP2-like isoform 1 [Glycine max]

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 219/314 (69%), Positives = 262/314 (83%), Gaps = 1/314 (0%)

Query: 1   MESEEGLRQQLEELQKQLGKKLRFEDSVANINSLLRDRFPAASPTLRNQFYSVVCRVATI 60
           MESE+ ++Q+LEELQKQLGKKL+FE S++++ SLL+  +P+ASP LR  FY V+CRVAT+
Sbjct: 1   MESEDLVKQELEELQKQLGKKLKFEASISSLKSLLQRTYPSASPALRKSFYLVICRVATV 60

Query: 61  LKTRYTAPGFWLAGLRLFELAESLVSDPSQKQHLKACIAKAKEHLHEIDNAPEASEATYN 120
           LKTRYTAPGFW AGL LFE A  LVS+PS+K+ LKACIA+A+EHLH  DN  +A + + N
Sbjct: 61  LKTRYTAPGFWNAGLGLFEQAHLLVSEPSEKEKLKACIAQAREHLHLEDNPSQALQPSDN 120

Query: 121 TTNRGYLFEGHLTVDPEPPQPQWLVQANLMNAVASLSSTAESSRGLAESINTSETVANLF 180
             NRGYLFEGHLTVDPEPPQPQWLVQ+NL+   A+L + AESS+  A +  T E  AN+ 
Sbjct: 121 QANRGYLFEGHLTVDPEPPQPQWLVQSNLLTTAATLFA-AESSQAPAANETTQEDAANML 179

Query: 181 QELVNNLDDVIPEILETDSATPRVPPASKEVVAKLPVITLTEEILDKLGHDAECAICKEN 240
           Q+L+N L++V+P +++     P+ PPASKEVVA LPVITLTEEIL  LG DAECAIC+EN
Sbjct: 180 QDLLNRLEEVVPLMVDGGPVAPKAPPASKEVVANLPVITLTEEILANLGKDAECAICREN 239

Query: 241 LLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYESWKEREKEAQEERK 300
           L++ DKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYESWKEREKEA+EERK
Sbjct: 240 LVLNDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYESWKEREKEAEEERK 299

Query: 301 GAANAVRGGEYMYV 314
           GA NA+RGGEYMYV
Sbjct: 300 GAENAIRGGEYMYV 313

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637845|gb|ACU19242.1| unknown [Glycine max]

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 218/314 (69%), Positives = 261/314 (83%), Gaps = 1/314 (0%)

Query: 1   MESEEGLRQQLEELQKQLGKKLRFEDSVANINSLLRDRFPAASPTLRNQFYSVVCRVATI 60
           MESE+ ++Q+LEELQKQLGKKL+FE S++++ SLL+  +P+ASP LR  FY V+CRVAT+
Sbjct: 1   MESEDLVKQELEELQKQLGKKLKFEASISSLKSLLQRTYPSASPALRKSFYLVICRVATV 60

Query: 61  LKTRYTAPGFWLAGLRLFELAESLVSDPSQKQHLKACIAKAKEHLHEIDNAPEASEATYN 120
           LKTRYTAPGFW AGL LFE A  LVS+PS+K+ LKACIA+A+EHLH  DN  +A + + N
Sbjct: 61  LKTRYTAPGFWNAGLGLFEQAHLLVSEPSEKEKLKACIAQAREHLHLEDNPSQALQPSDN 120

Query: 121 TTNRGYLFEGHLTVDPEPPQPQWLVQANLMNAVASLSSTAESSRGLAESINTSETVANLF 180
             NRGYLFEGHLTVDPE PQPQWLVQ+NL+   A+L + AESS+  A +  T E  AN+ 
Sbjct: 121 QANRGYLFEGHLTVDPESPQPQWLVQSNLLTTAATLFA-AESSQAPAANETTQEDAANML 179

Query: 181 QELVNNLDDVIPEILETDSATPRVPPASKEVVAKLPVITLTEEILDKLGHDAECAICKEN 240
           Q+L+N L++V+P +++     P+ PPASKEVVA LPVITLTEEIL  LG DAECAIC+EN
Sbjct: 180 QDLLNRLEEVVPLMVDGGPVAPKAPPASKEVVANLPVITLTEEILANLGKDAECAICREN 239

Query: 241 LLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYESWKEREKEAQEERK 300
           L++ DKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYESWKEREKEA+EERK
Sbjct: 240 LVLNDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYESWKEREKEAEEERK 299

Query: 301 GAANAVRGGEYMYV 314
           GA NA+RGGEYMYV
Sbjct: 300 GAENAIRGGEYMYV 313

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563972|ref|XP_003550231.1| PREDICTED: E3 ubiquitin-protein ligase AIP2-like isoform 2 [Glycine max]

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 220/314 (70%), Positives = 261/314 (83%), Gaps = 6/314 (1%)

Query: 1   MESEEGLRQQLEELQKQLGKKLRFEDSVANINSLLRDRFPAASPTLRNQFYSVVCRVATI 60
           MESE+ ++Q+LEELQKQLGKKL+FE S++++ SLL+  +P+ASP LR  FY V+CRVAT+
Sbjct: 1   MESEDLVKQELEELQKQLGKKLKFEASISSLKSLLQRTYPSASPALRKSFYLVICRVATV 60

Query: 61  LKTRYTAPGFWLAGLRLFELAESLVSDPSQKQHLKACIAKAKEHLHEIDNAPEASEATYN 120
           LKTRYTAPGFW AGL LFE A  LVS+PS+K+ LKACIA+A+EHLH  DN  +A + + N
Sbjct: 61  LKTRYTAPGFWNAGLGLFEQAHLLVSEPSEKEKLKACIAQAREHLHLEDNPSQALQPSDN 120

Query: 121 TTNRGYLFEGHLTVDPEPPQPQWLVQANLMNAVASLSSTAESSRGLAESINTSETVANLF 180
             NRGYLFEGHLTVDPEPPQPQWLVQ+NL+   A+L + AESS+  A +  T E  AN+ 
Sbjct: 121 QANRGYLFEGHLTVDPEPPQPQWLVQSNLLTTAATLFA-AESSQAPAANETTQEDAANML 179

Query: 181 QELVNNLDDVIPEILETDSATPRVPPASKEVVAKLPVITLTEEILDKLGHDAECAICKEN 240
           Q+L+N L++V+P +L      P+ PPASKEVVA LPVITLTEEIL  LG DAECAIC+EN
Sbjct: 180 QDLLNRLEEVVPLVL-----APKAPPASKEVVANLPVITLTEEILANLGKDAECAICREN 234

Query: 241 LLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYESWKEREKEAQEERK 300
           L++ DKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYESWKEREKEA+EERK
Sbjct: 235 LVLNDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYESWKEREKEAEEERK 294

Query: 301 GAANAVRGGEYMYV 314
           GA NA+RGGEYMYV
Sbjct: 295 GAENAIRGGEYMYV 308

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552445|ref|XP_003544578.1| PREDICTED: E3 ubiquitin-protein ligase AIP2-like isoform 1 [Glycine max]

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 217/314 (69%), Positives = 258/314 (82%), Gaps = 1/314 (0%)

Query: 1   MESEEGLRQQLEELQKQLGKKLRFEDSVANINSLLRDRFPAASPTLRNQFYSVVCRVATI 60
           MESE+ ++Q+LEELQKQLGKK +FE SV+++ +LL+  +P+ASP LR  FYSV+CRVAT+
Sbjct: 1   MESEDLVKQELEELQKQLGKKQKFEASVSSLKTLLQRTYPSASPALRKSFYSVLCRVATV 60

Query: 61  LKTRYTAPGFWLAGLRLFELAESLVSDPSQKQHLKACIAKAKEHLHEIDNAPEASEATYN 120
           LKTRYTAPGFW AGL LFE A  LVSDPS+K+HLKACIA+A+EHLH  DN  +      N
Sbjct: 61  LKTRYTAPGFWNAGLGLFEQAHLLVSDPSEKEHLKACIAQAREHLHLEDNPSQTLRPADN 120

Query: 121 TTNRGYLFEGHLTVDPEPPQPQWLVQANLMNAVASLSSTAESSRGLAESINTSETVANLF 180
             NRGYLFEGHLTVDPEPPQPQWLVQ+NL+   A+L + AESS+    +  T +   N+ 
Sbjct: 121 QANRGYLFEGHLTVDPEPPQPQWLVQSNLLTTAATLFA-AESSQASEANETTQDDATNML 179

Query: 181 QELVNNLDDVIPEILETDSATPRVPPASKEVVAKLPVITLTEEILDKLGHDAECAICKEN 240
           ++L+N L++V+P +++     PR PPASKEVVA LPVITLTEEIL  LG DAECAIC+EN
Sbjct: 180 EDLLNRLEEVVPLMVDVGPVAPRAPPASKEVVANLPVITLTEEILANLGKDAECAICREN 239

Query: 241 LLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYESWKEREKEAQEERK 300
           L++ DKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYESWKEREKEA+EERK
Sbjct: 240 LVLNDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYESWKEREKEAEEERK 299

Query: 301 GAANAVRGGEYMYV 314
           GA NA+RGGEYMYV
Sbjct: 300 GAENAIRGGEYMYV 313

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552447|ref|XP_003544579.1| PREDICTED: E3 ubiquitin-protein ligase AIP2-like isoform 2 [Glycine max]

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 217/314 (69%), Positives = 258/314 (82%), Gaps = 1/314 (0%)

Query: 1   MESEEGLRQQLEELQKQLGKKLRFEDSVANINSLLRDRFPAASPTLRNQFYSVVCRVATI 60
           MESE+ ++Q+LEELQKQLGKK +FE SV+++ +LL+  +P+ASP LR  FYSV+CRVAT+
Sbjct: 1   MESEDLVKQELEELQKQLGKKQKFEASVSSLKTLLQRTYPSASPALRKSFYSVLCRVATV 60

Query: 61  LKTRYTAPGFWLAGLRLFELAESLVSDPSQKQHLKACIAKAKEHLHEIDNAPEASEATYN 120
           LKTRYTAPGFW AGL LFE A  LVSDPS+K+HLKACIA+A+EHLH  DN  +      N
Sbjct: 61  LKTRYTAPGFWNAGLGLFEQAHLLVSDPSEKEHLKACIAQAREHLHLEDNPSQTLRPADN 120

Query: 121 TTNRGYLFEGHLTVDPEPPQPQWLVQANLMNAVASLSSTAESSRGLAESINTSETVANLF 180
             NRGYLFEGHLTVDPEPPQPQWLVQ+NL+   A+L + AESS+    +  T +   N+ 
Sbjct: 121 QANRGYLFEGHLTVDPEPPQPQWLVQSNLLTTAATLFA-AESSQASEANETTQDDATNML 179

Query: 181 QELVNNLDDVIPEILETDSATPRVPPASKEVVAKLPVITLTEEILDKLGHDAECAICKEN 240
           ++L+N L++V+P +   +  +PR PPASKEVVA LPVITLTEEIL  LG DAECAIC+EN
Sbjct: 180 EDLLNRLEEVVPLVFIQNIPSPRAPPASKEVVANLPVITLTEEILANLGKDAECAICREN 239

Query: 241 LLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYESWKEREKEAQEERK 300
           L++ DKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYESWKEREKEA+EERK
Sbjct: 240 LVLNDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYESWKEREKEAEEERK 299

Query: 301 GAANAVRGGEYMYV 314
           GA NA+RGGEYMYV
Sbjct: 300 GAENAIRGGEYMYV 313

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506224|gb|AFK41178.1| unknown [Medicago truncatula]

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 217/314 (69%), Positives = 260/314 (82%), Gaps = 1/314 (0%)

Query: 1   MESEEGLRQQLEELQKQLGKKLRFEDSVANINSLLRDRFPAASPTLRNQFYSVVCRVATI 60
           MESE  ++Q+LEELQKQLGKK +FED+V+++ SLL+  +P AS +LR  FYSV+CRVAT+
Sbjct: 1   MESENLVKQELEELQKQLGKKQKFEDAVSSLKSLLQTTYPLASTSLRKSFYSVICRVATV 60

Query: 61  LKTRYTAPGFWLAGLRLFELAESLVSDPSQKQHLKACIAKAKEHLHEIDNAPEASEATYN 120
           LKTRYTAPGFW AGL LFE A   VS+PS+K+HLKACIA+A+EHLH  DN  + S+   N
Sbjct: 61  LKTRYTAPGFWSAGLSLFEQAILFVSEPSEKEHLKACIAQAREHLHLEDNPSQTSQPAVN 120

Query: 121 TTNRGYLFEGHLTVDPEPPQPQWLVQANLMNAVASLSSTAESSRGLAESINTSETVANLF 180
             NRGYLFEGHLTVD EPPQP+W+VQANL+N    L   A+ S+GLA +  T E VA++ 
Sbjct: 121 RENRGYLFEGHLTVDQEPPQPEWMVQANLLNEAVRLFE-AQPSQGLATNDTTPEDVASVL 179

Query: 181 QELVNNLDDVIPEILETDSATPRVPPASKEVVAKLPVITLTEEILDKLGHDAECAICKEN 240
           + L N L++V+P +     A PRVPPASKEVV+KLPVITLTEEIL K+G DAECAIC+EN
Sbjct: 180 EMLRNRLEEVVPLMETGGPAAPRVPPASKEVVSKLPVITLTEEILSKMGKDAECAICREN 239

Query: 241 LLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYESWKEREKEAQEERK 300
           L++ D+MQELPCKHTFHPPCLKPWLDEHNSCPICR+ELQTDDHAYESWKEREKEA+EERK
Sbjct: 240 LVLNDQMQELPCKHTFHPPCLKPWLDEHNSCPICRYELQTDDHAYESWKEREKEAEEERK 299

Query: 301 GAANAVRGGEYMYV 314
           GAANA+RGGE+MYV
Sbjct: 300 GAANALRGGEFMYV 313

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088631|ref|XP_002308505.1| predicted protein [Populus trichocarpa] gi|222854481|gb|EEE92028.1| predicted protein [Populus trichocarpa]

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 219/312 (70%), Positives = 261/312 (83%), Gaps = 8/312 (2%)

Query: 3   SEEGLRQQLEELQKQLGKKLRFEDSVANINSLLRDRFPAASPTLRNQFYSVVCRVATILK 62
           +E+ L+++LEELQKQLGKK +FED+++++ SLLR  +P+ASP+LR  FYSVVCRVAT+LK
Sbjct: 4   NEQLLKKELEELQKQLGKKQKFEDALSSLKSLLRLHYPSASPSLRKTFYSVVCRVATVLK 63

Query: 63  TRYTAPGFWLAGLRLFELAESLVSDPSQKQHLKACIAKAKEHLHEIDNAPEASEATYNTT 122
           TRY APGFWLAGL LF+ A  L SD ++K+HLK CIA+AKEHL +I+N P+ S+      
Sbjct: 64  TRYIAPGFWLAGLGLFQEALLLTSDSTEKEHLKNCIAQAKEHLDQIENPPDVSQ------ 117

Query: 123 NRGYLFEGHLTVDPEPPQPQWLVQANLMNAVASLSSTAESSRGLAESINTSETVANLFQE 182
           N GYLFEGHLTVDPEPP+PQWLVQ+N++N++A+L     S R +    NT ET +NL  E
Sbjct: 118 NSGYLFEGHLTVDPEPPRPQWLVQSNILNSMATLQEFESSGRPVDN--NTIETASNLLGE 175

Query: 183 LVNNLDDVIPEILETDSATPRVPPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLL 242
           L++N DD+IPEI+E  S  PRVPPASKEVVAKLPVIT+TEEIL +LG DAECAICKENL+
Sbjct: 176 LMSNFDDMIPEIMEMGSTAPRVPPASKEVVAKLPVITITEEILAELGKDAECAICKENLV 235

Query: 243 VGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYESWKEREKEAQEERKGA 302
           V DKMQELPCKH FHPPCLKPWLDEHNSCPICRHELQTDDHAYESWKEREKEA EERKGA
Sbjct: 236 VNDKMQELPCKHRFHPPCLKPWLDEHNSCPICRHELQTDDHAYESWKEREKEAAEERKGA 295

Query: 303 ANAVRGGEYMYV 314
            NAVRGGE+MY+
Sbjct: 296 ENAVRGGEFMYI 307

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429746|ref|XP_002282370.1| PREDICTED: E3 ubiquitin-protein ligase AIP2 isoform 1 [Vitis vinifera]

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 223/314 (71%), Positives = 267/314 (85%), Gaps = 3/314 (0%)

Query: 3   SEEGLRQQLEELQKQLGKKLRFEDSVANINSLLRDRFPAASPTLRNQFYSVVCRVATILK 62
           SEE L+QQL+ELQKQLGKK  FE++V +I SLL D + ++SP+LR  FYSVVCRVATIL+
Sbjct: 5   SEENLKQQLQELQKQLGKKQMFEEAVLSIKSLLVDHYSSSSPSLRKLFYSVVCRVATILR 64

Query: 63  TRYTAPGFWLAGLRLFELAESLVSDPSQKQHLKACIAKAKEHLHEIDNAPEASEATYNTT 122
           TRYTAPGFWL+GLRLFE AES+V+D S+K++LK+CIA A++ L+ ++N  EASE T N  
Sbjct: 65  TRYTAPGFWLSGLRLFEQAESMVTDSSEKENLKSCIAGARQQLNHVENLSEASETTENRA 124

Query: 123 NRGYLFEGHLTVDPEPPQPQWLVQAN-LMNAVASLSSTAESSRGLAESIN-TSETVANLF 180
           NRGYLFEGHLTVDPEPP+PQWLVQ+N L+ A A+LS+  ES+ GL E+ N TSE  A++ 
Sbjct: 125 NRGYLFEGHLTVDPEPPRPQWLVQSNNLLTAAATLSNL-ESANGLTENNNITSENAASIL 183

Query: 181 QELVNNLDDVIPEILETDSATPRVPPASKEVVAKLPVITLTEEILDKLGHDAECAICKEN 240
            +L+++L D++PEIL+ D+  PRVPPASKEVVA LPVITLTE+ L KL  DAECAICKEN
Sbjct: 184 LQLMDDLQDIVPEILDNDTRAPRVPPASKEVVANLPVITLTEDALSKLSGDAECAICKEN 243

Query: 241 LLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYESWKEREKEAQEERK 300
            +V DKMQELPCKHTFHPPCLKPWLD+HNSCPICRHEL TDD AYESWK+REKEA+EERK
Sbjct: 244 FVVDDKMQELPCKHTFHPPCLKPWLDKHNSCPICRHELLTDDRAYESWKQREKEAEEERK 303

Query: 301 GAANAVRGGEYMYV 314
           GAANAVRGGEYMYV
Sbjct: 304 GAANAVRGGEYMYV 317

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550245|ref|XP_002516173.1| zinc finger protein, putative [Ricinus communis] gi|223544659|gb|EEF46175.1| zinc finger protein, putative [Ricinus communis]

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/296 (71%), Positives = 252/296 (85%), Gaps = 11/296 (3%)

Query: 19  GKKLRFEDSVANINSLLRDRFPAASPTLRNQFYSVVCRVATILKTRYTAPGFWLAGLRLF 78
            KK +FED+V +I SLLRD + ++SP+LRN FY VVCRV+TILKTRYTAPGFW+ GL LF
Sbjct: 19  SKKQKFEDAVFSIKSLLRDFYLSSSPSLRNSFYLVVCRVSTILKTRYTAPGFWMTGLGLF 78

Query: 79  ELAESLVSDPSQKQHLKACIAKAKEHLHEIDNAPEASEATYNTTNRGYLFEGHLTVDPEP 138
           E AE LVSD SQK+HLK CI +AKEHLH  DN P+ S ++   +  GYLFEGHLTVDPEP
Sbjct: 79  EQAECLVSDSSQKEHLKNCILQAKEHLHLTDNPPDVSSSS---SRGGYLFEGHLTVDPEP 135

Query: 139 PQPQWLVQANLMNAVASLSSTAESSRGLAESINTSETVANLFQELVNNLDDVIPEILETD 198
           PQPQWLVQ+NL+N++ASL + AESSRG  + +  +E+ +++ +EL+ NLDD++P++L   
Sbjct: 136 PQPQWLVQSNLVNSMASLLA-AESSRGRVDIV--AESASSMLEELMTNLDDIMPQVL--- 189

Query: 199 SATPRVPPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHP 258
              P+VPPASKEVVAKLPVITLT+EIL KLG DAECAICKENL+V DKMQELPCKHTFHP
Sbjct: 190 --VPKVPPASKEVVAKLPVITLTQEILAKLGQDAECAICKENLVVDDKMQELPCKHTFHP 247

Query: 259 PCLKPWLDEHNSCPICRHELQTDDHAYESWKEREKEAQEERKGAANAVRGGEYMYV 314
           PCLKPWLDEHNSCPICRHELQTDDHAYESWKEREKEA+EERKGAANAVRGGE++Y+
Sbjct: 248 PCLKPWLDEHNSCPICRHELQTDDHAYESWKEREKEAEEERKGAANAVRGGEFLYI 303

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081746|emb|CBI20751.3| unnamed protein product [Vitis vinifera]

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 207/293 (70%), Positives = 249/293 (84%), Gaps = 3/293 (1%)

Query: 24  FEDSVANINSLLRDRFPAASPTLRNQFYSVVCRVATILKTRYTAPGFWLAGLRLFELAES 83
           FE++V +I SLL D + ++SP+LR  FYSVVCRVATIL+TRYTAPGFWL+GLRLFE AES
Sbjct: 2   FEEAVLSIKSLLVDHYSSSSPSLRKLFYSVVCRVATILRTRYTAPGFWLSGLRLFEQAES 61

Query: 84  LVSDPSQKQHLKACIAKAKEHLHEIDNAPEASEATYNTTNRGYLFEGHLTVDPEPPQPQW 143
           +V+D S+K++LK+CIA A++ L+ ++N  EASE T N  NRGYLFEGHLTVDPEPP+PQW
Sbjct: 62  MVTDSSEKENLKSCIAGARQQLNHVENLSEASETTENRANRGYLFEGHLTVDPEPPRPQW 121

Query: 144 LVQAN-LMNAVASLSSTAESSRGLAESIN-TSETVANLFQELVNNLDDVIPEILETDSAT 201
           LVQ+N L+ A A+LS+  ES+ GL E+ N TSE  A++  +L+++L D++PEIL+ D+  
Sbjct: 122 LVQSNNLLTAAATLSNL-ESANGLTENNNITSENAASILLQLMDDLQDIVPEILDNDTRA 180

Query: 202 PRVPPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCL 261
           PRVPPASKEVVA LPVITLTE+ L KL  DAECAICKEN +V DKMQELPCKHTFHPPCL
Sbjct: 181 PRVPPASKEVVANLPVITLTEDALSKLSGDAECAICKENFVVDDKMQELPCKHTFHPPCL 240

Query: 262 KPWLDEHNSCPICRHELQTDDHAYESWKEREKEAQEERKGAANAVRGGEYMYV 314
           KPWLD+HNSCPICRHEL TDD AYESWK+REKEA+EERKGAANAVRGGEYMYV
Sbjct: 241 KPWLDKHNSCPICRHELLTDDRAYESWKQREKEAEEERKGAANAVRGGEYMYV 293

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	314
TAIR|locus:2147152	310	AIP2 "ABI3-interacting protein	0.891	0.903	0.652	4.5e-98
TAIR|locus:2092231	328	AT3G19950 [Arabidopsis thalian	0.315	0.301	0.415	1.7e-20
TAIR|locus:2074567	409	AT3G02340 [Arabidopsis thalian	0.308	0.237	0.434	1.8e-20
DICTYBASE|DDB_G0280089	457	DDB_G0280089 "RING zinc finger	0.251	0.172	0.5	6.4e-20
TAIR|locus:2143176	348	AT5G15820 [Arabidopsis thalian	0.302	0.272	0.443	7.2e-20
RGD|1306011	328	Rnf126 "ring finger protein 12	0.283	0.271	0.421	1.2e-19
MGI|MGI:1917544	313	Rnf126 "ring finger protein 12	0.283	0.284	0.421	1.5e-19
UNIPROTKB|Q9BV68	326	RNF126 "RING finger protein 12	0.283	0.273	0.410	3.1e-19
UNIPROTKB|F1SDD6	231	F1SDD6 "Uncharacterized protei	0.305	0.415	0.382	3.1e-19
UNIPROTKB|I3LDQ5	293	LOC100739432 "Uncharacterized	0.305	0.327	0.382	3.1e-19

TAIR|locus:2147152 AIP2 "ABI3-interacting protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 974 (347.9 bits), Expect = 4.5e-98, P = 4.5e-98
 Identities = 190/291 (65%), Positives = 218/291 (74%)

Query:    24 FEDSVANINSLLRDRFPAASPTLRNQFYSVVCRVATILKTRYTAPGFWLAGLRLFELAES 83
             FE SV +I++LLRD + ++SP+LR QFY VV RVAT+LKTRYTA GFW+AGL LFE AE 
Sbjct:    31 FEASVCSIHNLLRDHYSSSSPSLRKQFYIVVSRVATVLKTRYTATGFWVAGLSLFEEAER 90

Query:    84 LVSDPSQKQHLKACIAKAKEHLHEIDNAPEASEATYNTTNRGYLFEGHLTVDPEPPQPQW 143
             LVSD S+K+HLK+C+A+AKE L E+DN P  S       ++GYLFEGHLTVD EPPQPQW
Sbjct:    91 LVSDASEKKHLKSCVAQAKEQLSEVDNQPTES-------SQGYLFEGHLTVDREPPQPQW 143

Query:   144 LVQANLMNAVASLSSTAESSRGLAESINTSETVANLFQELVNNLDDVIPEILETDSATPR 203
             LVQ NLM+A AS+    ESS G  E  NT    ANL QEL+N LD +IP+IL+ D   PR
Sbjct:   144 LVQQNLMSAFASIVG-GESSNGPTE--NTIGETANLMQELINGLDMIIPDILD-DGGPPR 199

Query:   204 VPPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKP 263
              PPASKEVV KLPVI  TEE+L K G +AEC ICKENL++GDKMQELPCKHTFHPPCLKP
Sbjct:   200 APPASKEVVEKLPVIIFTEELLKKFGAEAECCICKENLVIGDKMQELPCKHTFHPPCLKP 259

Query:   264 WLDEHNSCPICRHELQTDDHAYESWXXXXXXXXXXXXXXXNAVRGGEYMYV 314
             WLDEHNSCPICRHEL TDD  YE+W               NAVRGGEYMYV
Sbjct:   260 WLDEHNSCPICRHELPTDDQKYENWKEREKEAEEERKGAENAVRGGEYMYV 310

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009788 "negative regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0006865 "amino acid transport" evidence=RCA

TAIR|locus:2092231 AT3G19950 [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 42/101 (41%), Positives = 63/101 (62%)

Query:   187 LDDVIPEILETDSATPRVPPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDK 246
             L+ +I ++ E D      PPASK  +  LP + +T+++L    +  +CA+C +    G  
Sbjct:   171 LEQLIQQLAENDPNRYGTPPASKSAIDALPTVKVTKDMLKSEMN--QCAVCMDEFEDGSD 228

Query:   247 MQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYES 287
             ++++PCKH FH  CL PWL+ HNSCP+CR EL TDD  YE+
Sbjct:   229 VKQMPCKHVFHQDCLLPWLELHNSCPVCRFELPTDDPDYEN 269

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:2074567 AT3G02340 [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 1.8e-20, P = 1.8e-20
 Identities = 43/99 (43%), Positives = 66/99 (66%)

Query:   188 DDVIPEILETDSATPRVPPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDKM 247
             D ++ ++ + ++     PPA+K V+  LPV+ L  E LDK G++  CA+CK+ +LV +K+
Sbjct:   291 DAILGQMFDDETGIRGNPPAAKSVIQDLPVVELAVEELDK-GNNV-CAVCKDEMLVEEKV 348

Query:   248 QELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYE 286
             + LPC H +H  C+ PWL   N+CP+CR+EL TDD  YE
Sbjct:   349 RRLPCSHFYHGECIIPWLGIRNTCPVCRYELPTDDLEYE 387

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

DICTYBASE|DDB_G0280089 DDB_G0280089 "RING zinc finger-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 242 (90.2 bits), Expect = 6.4e-20, P = 6.4e-20
 Identities = 41/82 (50%), Positives = 57/82 (69%)

Query:   205 PPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPW 264
             PPASKE + KL    + + I+D+     +CA+CK+    GD   ELPC+H +HP C+ PW
Sbjct:   330 PPASKEEIEKLKRDRVDQTIVDQ---KVDCAVCKDEFKWGDDYIELPCQHLYHPECILPW 386

Query:   265 LDEHNSCPICRHELQTDDHAYE 286
             L++HNSCP+CR EL+TDD +YE
Sbjct:   387 LEQHNSCPVCRFELKTDDDSYE 408

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

TAIR|locus:2143176 AT5G15820 [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 43/97 (44%), Positives = 61/97 (62%)

Query:   190 VIPEILETDSATPRVPPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDKMQE 249
             +I ++ + ++     PPASK VV  LP + LT E L  +     CAICK+ ++  +K++ 
Sbjct:   249 IIGQMFDNETGIKGTPPASKSVVDGLPDVELTIEELSSVS--IVCAICKDEVVFKEKVKR 306

Query:   250 LPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYE 286
             LPCKH +H  C+ PWL   N+CP+CRHEL TDD  YE
Sbjct:   307 LPCKHYYHGECIIPWLGIRNTCPVCRHELPTDDLEYE 343

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

RGD|1306011 Rnf126 "ring finger protein 126" [Rattus norvegicus (taxid:10116)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 40/95 (42%), Positives = 63/95 (66%)

Query:   185 NNLDDVIPEIL-ETDSATPRVPPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLV 243
             N LD +I ++L + ++  P  PPA KE +  LP + +TEE    +G   EC +CKE+  +
Sbjct:   201 NGLDAIITQLLNQFENTGP--PPADKEKIQALPTVPVTEE---HVGSGLECPVCKEDYAL 255

Query:   244 GDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHEL 278
             G+++++LPC H FH  C+ PWL++H+SCP+CR  L
Sbjct:   256 GERVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 290

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:1917544 Rnf126 "ring finger protein 126" [Mus musculus (taxid:10090)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 40/95 (42%), Positives = 62/95 (65%)

Query:   185 NNLDDVIPEIL-ETDSATPRVPPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLV 243
             N LD +I ++L + ++  P  PPA KE +  LP + +TEE    +G   EC +CKE+  +
Sbjct:   186 NGLDTIITQLLNQFENTGP--PPADKEKIQALPTVPVTEE---HVGSGLECPVCKEDYAL 240

Query:   244 GDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHEL 278
             G+ +++LPC H FH  C+ PWL++H+SCP+CR  L
Sbjct:   241 GESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 275

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q9BV68 RNF126 "RING finger protein 126" [Homo sapiens (taxid:9606)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 39/95 (41%), Positives = 63/95 (66%)

Query:   185 NNLDDVIPEIL-ETDSATPRVPPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLV 243
             N LD +I ++L + ++  P  PPA KE +  LP + +TEE    +G   EC +CK++  +
Sbjct:   184 NGLDAIITQLLNQFENTGP--PPADKEKIQALPTVPVTEE---HVGSGLECPVCKDDYAL 238

Query:   244 GDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHEL 278
             G+++++LPC H FH  C+ PWL++H+SCP+CR  L
Sbjct:   239 GERVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSL 273

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1SDD6 F1SDD6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 39/102 (38%), Positives = 66/102 (64%)

Query:   187 LDDVIPEIL-ETDSATPRVPPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGD 245
             LD ++ ++L + ++  P  PPA KE +  LP +T+T+E +DK     EC +CKE+  V +
Sbjct:   112 LDAIVTQLLGQLENTGP--PPADKEKITSLPTVTITQEQVDK---GLECPVCKEDYTVEE 166

Query:   246 KMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYES 287
             ++++LPC H FH  C+ PWL+ H++CP+CR  L  +D   ++
Sbjct:   167 EVRQLPCNHFFHSSCIVPWLELHDACPVCRKSLSGEDSTQQT 208

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|I3LDQ5 LOC100739432 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 39/102 (38%), Positives = 66/102 (64%)

Query:   187 LDDVIPEIL-ETDSATPRVPPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGD 245
             LD ++ ++L + ++  P  PPA KE +  LP +T+T+E +DK     EC +CKE+  V +
Sbjct:   174 LDAIVTQLLGQLENTGP--PPADKEKITSLPTVTITQEQVDK---GLECPVCKEDYTVEE 228

Query:   246 KMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYES 287
             ++++LPC H FH  C+ PWL+ H++CP+CR  L  +D   ++
Sbjct:   229 EVRQLPCNHFFHSSCIVPWLELHDACPVCRKSLSGEDSTQQT 270

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8RXD3	AIP2_ARATH	6, ., 3, ., 2, ., -	0.6948	0.9458	0.9580	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	314
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	7e-17
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	8e-13
COG5540	374	COG5540, COG5540, RING-finger-containing ubiquitin	3e-12
smart00184	40	smart00184, RING, Ring finger	9e-10
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	5e-09
COG5243	491	COG5243, HRD1, HRD ubiquitin ligase complex, ER me	2e-08
pfam00097	40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	5e-08
pfam12678	73	pfam12678, zf-rbx1, RING-H2 zinc finger	2e-07
PHA02929	238	PHA02929, PHA02929, N1R/p28-like protein; Provisio	3e-05
COG5194	88	COG5194, APC11, Component of SCF ubiquitin ligase	5e-05
pfam12861	85	pfam12861, zf-Apc11, Anaphase-promoting complex su	2e-04
COG5219	1525	COG5219, COG5219, Uncharacterized conserved protei	6e-04
COG5432	391	COG5432, RAD18, RING-finger-containing E3 ubiquiti	0.002

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 72.8 bits (179), Expect = 7e-17
 Identities = 20/45 (44%), Positives = 26/45 (57%)

Query: 233 ECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHE 277
           EC IC +    G+++  LPC H FH  CL  WL   N+CP+CR  
Sbjct: 2   ECPICLDEFEPGEEVVVLPCGHVFHKECLDKWLRSSNTCPLCRAP 46

Length = 46

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 61.7 bits (150), Expect = 8e-13
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 233 ECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDE-HNSCPICRHEL 278
           EC IC E     + +  LPC H F   C+  WL    N+CP+CR  +
Sbjct: 1   ECPICLEEF--REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45

Length = 45

>gnl|CDD|227827 COG5540, COG5540, RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 66.2 bits (161), Expect = 3e-12
 Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 233 ECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEH-NSCPICRHEL 278
           ECAIC  N +  D+++ LPC H FH  C+  WL  + N CP+CR  +
Sbjct: 325 ECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAI 371

Length = 374

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 52.9 bits (127), Expect = 9e-10
 Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 234 CAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHN-SCPIC 274
           C IC E  L       LPC HTF   C++ WL+  N +CPIC
Sbjct: 1   CPICLEEYL--KDPVILPCGHTFCRSCIRKWLESGNNTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 51.0 bits (122), Expect = 5e-09
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 233 ECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRH 276
           EC IC + L   D +   PC H F   C+  +L + + CPICR 
Sbjct: 4   ECPICLDLL--RDPVVLTPCGHVFCRECILRYLKKKSKCPICRT 45

Length = 45

>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

 Score = 54.6 bits (131), Expect = 2e-08
 Identities = 26/75 (34%), Positives = 31/75 (41%), Gaps = 12/75 (16%)

Query: 217 VITLTEEILDKLGHDAECAICKENLLVGDKMQ----------ELPCKHTFHPPCLKPWLD 266
             T TEE L     D  C IC + +   D              LPC H  H  CLK WL+
Sbjct: 275 YPTATEEQLTN--SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLE 332

Query: 267 EHNSCPICRHELQTD 281
              +CPICR  +  D
Sbjct: 333 RQQTCPICRRPVIFD 347

Length = 491

>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)

 Score = 48.2 bits (115), Expect = 5e-08
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 234 CAICKENLLVGDKMQELPCKHTFHPPCLKPWL-DEHNSCPIC 274
           C IC E     D +  LPC H F   C+  WL   + +CP+C
Sbjct: 1   CPICLEEPK--DPVTILPCGHLFCSKCILSWLESGNVTCPLC 40

The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid. Many proteins containing a RING finger play a key role in the ubiquitination pathway. Length = 40

>gnl|CDD|221705 pfam12678, zf-rbx1, RING-H2 zinc finger

 Score = 47.0 bits (112), Expect = 2e-07
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 10/55 (18%)

Query: 231 DAECAICKENL--------LVGD--KMQELPCKHTFHPPCLKPWLDEHNSCPICR 275
           D  CAIC+ +           GD   +    C H FH  C+  WL   N+CP+CR
Sbjct: 19  DDVCAICRNHFDGTCPECKSPGDDCPVVWGECGHAFHLHCISRWLKTRNTCPLCR 73

There are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell cycle control. Length = 73

>gnl|CDD|222944 PHA02929, PHA02929, N1R/p28-like protein; Provisional

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 9/74 (12%)

Query: 209 KEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDKMQE------LP-CKHTFHPPCL 261
           K+ +  +P +    E L     D ECAIC E   V DK  +      L  C H F   C+
Sbjct: 152 KKFLKTIPSVLSEYEKLYNRSKDKECAICMEK--VYDKEIKNMYFGILSNCNHVFCIECI 209

Query: 262 KPWLDEHNSCPICR 275
             W  E N+CP+CR
Sbjct: 210 DIWKKEKNTCPVCR 223

Length = 238

>gnl|CDD|227521 COG5194, APC11, Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

 Score = 41.0 bits (96), Expect = 5e-05
 Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 8/54 (14%)

Query: 234 CAICKENLLVGDKMQELP-----CKHTFHPPCLKPWLDEHNSCPICRHELQTDD 282
           C  C+  +  GD   E P     C H FH  C+  WLD    CP+ R      D
Sbjct: 34  CPECQFGMTPGD---ECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVLAD 84

Length = 88

>gnl|CDD|193335 pfam12861, zf-Apc11, Anaphase-promoting complex subunit 11 RING-H2 finger

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 3/34 (8%)

Query: 252 CKHTFHPPCLKPWLDEHNS---CPICRHELQTDD 282
           CKH FH  C+  WL    S   CP+CR      +
Sbjct: 52  CKHNFHMHCILKWLATETSKGLCPMCRQTFVFAE 85

Apc11 is one of the subunits of the anaphase-promoting complex or cyclosome. The APC subunits are cullin family proteins with ubiquitin ligase activity. Polyubiquitination marks proteins for degradation by the 26S proteasome and is carried out by a cascade of enzymes that includes ubiquitin-activating enzymes (E1s), ubiquitin-conjugating enzymes (E2s), and ubiquitin ligases (E3s). Apc11 acts as an E3 enzyme and is responsible for recruiting E2s to the APC and for mediating the subsequent transfer of ubiquitin to APC substrates in vivo. In Saccharomyces cerevisiae this RING-H2 finger protein defines the minimal ubiquitin ligase activity of the APC, and the integrity of the RING-H2 finger is essential for budding yeast cell viability. Length = 85

>gnl|CDD|227544 COG5219, COG5219, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

 Score = 41.2 bits (96), Expect = 6e-04
 Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 11/58 (18%)

Query: 229  GHDAECAICKENLLVGDKMQELP------CKHTFHPPCLKPWLDEHNS--CPICRHEL 278
            GH+ ECAIC   L + D+   LP      CK+ FH  CL  W        CP+CR E+
Sbjct: 1468 GHE-ECAICYSVLDMVDR--SLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEI 1522

Length = 1525

>gnl|CDD|227719 COG5432, RAD18, RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

 Score = 39.3 bits (91), Expect = 0.002
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 3/46 (6%)

Query: 234 CAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQ 279
           C IC   + +     E  C HTF   C++  L     CP+CR +  
Sbjct: 28  CRICDCRISI---PCETTCGHTFCSLCIRRHLGTQPFCPVCREDPC 70

Length = 391

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	314
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	99.53
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	99.49
PHA02929	238	N1R/p28-like protein; Provisional	99.34
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	99.22
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	99.2
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	99.18
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	99.0
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.99
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.94
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.9
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.86
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	98.84
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.83
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.83
PHA02926	242	zinc finger-like protein; Provisional	98.82
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.81
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	98.8
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	98.78
PF14634	44	zf-RING_5: zinc-RING finger domain	98.73
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.7
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.67
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.64
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.54
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	98.47
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	98.44
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	98.43
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	98.4
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	98.36
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.35
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	98.34
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	98.34
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.32
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	98.31
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	98.2
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	98.14
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	98.14
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	98.08
COG5219	1525	Uncharacterized conserved protein, contains RING Z	98.06
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	98.0
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	97.99
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	97.95
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	97.87
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	97.77
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	97.77
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	97.76
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	97.74
KOG4445	368	consensus Uncharacterized conserved protein, conta	97.73
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.7
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	97.63
KOG0825	1134	consensus PHD Zn-finger protein [General function	97.58
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	97.41
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	97.28
KOG0297	391	consensus TNF receptor-associated factor [Signal t	97.14
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	97.07
COG5222	427	Uncharacterized conserved protein, contains RING Z	96.84
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	96.71
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	96.64
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	96.61
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.59
KOG2660	331	consensus Locus-specific chromosome binding protei	96.59
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	96.57
KOG0801	205	consensus Predicted E3 ubiquitin ligase [Posttrans	96.52
COG5152	259	Uncharacterized conserved protein, contains RING a	96.41
KOG1002	791	consensus Nucleotide excision repair protein RAD16	96.3
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	96.22
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	96.13
KOG3970	299	consensus Predicted E3 ubiquitin ligase [Posttrans	96.1
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	96.08
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	96.07
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	95.99
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	95.97
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	95.96
COG5175	480	MOT2 Transcriptional repressor [Transcription]	95.81
PHA02862	156	5L protein; Provisional	95.77
KOG3039	303	consensus Uncharacterized conserved protein [Funct	95.74
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	95.73
KOG1952	950	consensus Transcription factor NF-X1, contains NFX	95.63
KOG4739	233	consensus Uncharacterized protein involved in syna	95.42
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	95.41
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	95.37
PHA03096	284	p28-like protein; Provisional	95.32
COG5236	493	Uncharacterized conserved protein, contains RING Z	95.23
PHA02825	162	LAP/PHD finger-like protein; Provisional	94.74
KOG2034	911	consensus Vacuolar sorting protein PEP3/VPS18 [Int	94.24
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	94.17
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	94.03
KOG3268	234	consensus Predicted E3 ubiquitin ligase [Posttrans	94.01
KOG1940	276	consensus Zn-finger protein [General function pred	93.95
KOG1001	674	consensus Helicase-like transcription factor HLTF/	93.94
PF04641	260	Rtf2: Rtf2 RING-finger	93.84
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	93.75
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	93.59
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	93.51
KOG1100	207	consensus Predicted E3 ubiquitin ligase [Posttrans	91.92
KOG0298	1394	consensus DEAD box-containing helicase-like transc	91.91
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	91.61
KOG3002	299	consensus Zn finger protein [General function pred	91.19
KOG3039	303	consensus Uncharacterized conserved protein [Funct	90.45
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	90.01
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	89.92
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	89.48
KOG3800	300	consensus Predicted E3 ubiquitin ligase containing	88.98
PF03854	50	zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc	88.22
KOG3899	381	consensus Uncharacterized conserved protein [Funct	88.17
KOG4362	684	consensus Transcriptional regulator BRCA1 [Replica	87.6
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	87.49
KOG1609	323	consensus Protein involved in mRNA turnover and st	87.39
KOG3053	293	consensus Uncharacterized conserved protein [Funct	86.59
KOG1812	384	consensus Predicted E3 ubiquitin ligase [Posttrans	86.36
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	85.92
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	85.9
KOG4367	699	consensus Predicted Zn-finger protein [Function un	84.85
COG5109	396	Uncharacterized conserved protein, contains RING Z	81.02
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	80.49

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.53  E-value=3.3e-15  Score=143.63  Aligned_cols=77  Identities=39%  Similarity=0.863  Sum_probs=65.3

Q ss_pred             CCCHHHHhhCCCccchhHHhhhcCCcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCC-CCCcccccCCCCcc
Q 021283          206 PASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNS-CPICRHELQTDDHA  284 (314)
Q Consensus       206 ~~s~e~i~~Lp~~~~~~~~~~~~~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~t-CPvCR~~l~~~d~~  284 (314)
                      .+.+..+.++|..+++.....  .....|+||+|+|..|++++.|||+|.||..||++||..+.+ ||+||+++.++...
T Consensus       206 r~~k~~l~~~p~~~f~~~~~~--~~~~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~~~  283 (348)
T KOG4628|consen  206 RLIKRLLKKLPVRTFTKGDDE--DATDTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDSGS  283 (348)
T ss_pred             hhHHHHHhhCCcEEecccccc--CCCceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCCCCC
Confidence            688999999999999875321  112599999999999999999999999999999999998865 99999988765533

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=99.49  E-value=9.5e-15  Score=100.56  Aligned_cols=43  Identities=53%  Similarity=1.282  Sum_probs=40.5

Q ss_pred             cccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcc
Q 021283          233 ECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICR  275 (314)
Q Consensus       233 ~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR  275 (314)
                      +|+||++.|..++.++.++|+|.||..||..|++.+.+||+||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence            7999999998888999999999999999999999999999997

...

>PHA02929 N1R/p28-like protein; Provisional

Probab=99.34  E-value=1.4e-12  Score=120.27  Aligned_cols=74  Identities=30%  Similarity=0.596  Sum_probs=57.8

Q ss_pred             CCCHHHHhhCCCccchhHHhhhcCCcccccccccccccCCc-----cEEeCCCCccChhhHHHHHhcCCCCCCcccccC
Q 021283          206 PASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDK-----MQELPCKHTFHPPCLKPWLDEHNSCPICRHELQ  279 (314)
Q Consensus       206 ~~s~e~i~~Lp~~~~~~~~~~~~~~~~~C~ICLe~~~~~~~-----v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~  279 (314)
                      +.++..++.+|.+...-........+.+|+||++.+..+..     .+.++|+|.||..||.+|+..+.+||+||.++.
T Consensus       149 ~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~  227 (238)
T PHA02929        149 KNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI  227 (238)
T ss_pred             chhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence            45788899999887654433344567899999999754321     234569999999999999999999999999875

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=7.9e-12  Score=119.90  Aligned_cols=72  Identities=36%  Similarity=0.792  Sum_probs=54.3

Q ss_pred             CCHHHHhhCCCccchhHHhhhcCCcccccccccccccCC----------ccEEeCCCCccChhhHHHHHhcCCCCCCccc
Q 021283          207 ASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGD----------KMQELPCKHTFHPPCLKPWLDEHNSCPICRH  276 (314)
Q Consensus       207 ~s~e~i~~Lp~~~~~~~~~~~~~~~~~C~ICLe~~~~~~----------~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~  276 (314)
                      +.++.-+.++.++..+.    ..+|..|.||++++...+          ++.+|||||+||.+|++.|+.++.+||+||.
T Consensus       267 ~~kdl~~~~~t~t~eql----~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~  342 (491)
T COG5243         267 ATKDLNAMYPTATEEQL----TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRR  342 (491)
T ss_pred             HhhHHHhhcchhhhhhh----cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccC
Confidence            44555556665554332    346789999999954322          3688999999999999999999999999999


Q ss_pred             ccCCCC
Q 021283          277 ELQTDD  282 (314)
Q Consensus       277 ~l~~~d  282 (314)
                      ++..+.
T Consensus       343 p~ifd~  348 (491)
T COG5243         343 PVIFDQ  348 (491)
T ss_pred             cccccc
Confidence            965443

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.20  E-value=9.4e-12  Score=95.06  Aligned_cols=45  Identities=44%  Similarity=1.007  Sum_probs=36.1

Q ss_pred             cccccccccccccC----------CccEEeCCCCccChhhHHHHHhcCCCCCCcc
Q 021283          231 DAECAICKENLLVG----------DKMQELPCKHTFHPPCLKPWLDEHNSCPICR  275 (314)
Q Consensus       231 ~~~C~ICLe~~~~~----------~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR  275 (314)
                      +..|+||++.|...          -.+...+|||.||..||.+||+.+.+||+||
T Consensus        19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred             CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence            45699999999321          2345567999999999999999999999998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.18  E-value=1.6e-11  Score=115.16  Aligned_cols=52  Identities=40%  Similarity=1.012  Sum_probs=47.1

Q ss_pred             CCcccccccccccccCCccEEeCCCCccChhhHHHHHh-cCCCCCCcccccCC
Q 021283          229 GHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLD-EHNSCPICRHELQT  280 (314)
Q Consensus       229 ~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~-~~~tCPvCR~~l~~  280 (314)
                      +..-+|+||++.|..++.++.+||.|.||..|+.+|+. -+..||+||+++++
T Consensus       321 ~~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP  373 (374)
T COG5540         321 DKGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP  373 (374)
T ss_pred             CCCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence            34579999999998889999999999999999999998 46689999999986

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=99.00  E-value=2.3e-10  Score=102.23  Aligned_cols=50  Identities=28%  Similarity=0.769  Sum_probs=41.3

Q ss_pred             CCcccccccccccccCCccEEeCCCCccChhhHHHHHhc----------------CCCCCCcccccCCC
Q 021283          229 GHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDE----------------HNSCPICRHELQTD  281 (314)
Q Consensus       229 ~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~----------------~~tCPvCR~~l~~~  281 (314)
                      .++.+|+||++.+.   .++.++|||.||..||..|+..                ...||+||.++...
T Consensus        16 ~~~~~CpICld~~~---dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~   81 (193)
T PLN03208         16 GGDFDCNICLDQVR---DPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA   81 (193)
T ss_pred             CCccCCccCCCcCC---CcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence            45789999999873   4677899999999999999852                34799999998643

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.99  E-value=2.5e-10  Score=80.60  Aligned_cols=46  Identities=41%  Similarity=0.920  Sum_probs=39.9

Q ss_pred             cccccccccccccCCccEEeCCCCc-cChhhHHHHHhcCCCCCCcccccC
Q 021283          231 DAECAICKENLLVGDKMQELPCKHT-FHPPCLKPWLDEHNSCPICRHELQ  279 (314)
Q Consensus       231 ~~~C~ICLe~~~~~~~v~~LPCgH~-FH~~CI~~WL~~~~tCPvCR~~l~  279 (314)
                      +..|.||++..   ..++.+||||. ||..|+..|+.....||+||.+|.
T Consensus         2 ~~~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~   48 (50)
T PF13920_consen    2 DEECPICFENP---RDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE   48 (50)
T ss_dssp             HSB-TTTSSSB---SSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred             cCCCccCCccC---CceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence            56899999986   45889999999 999999999999999999999874

...

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.94  E-value=6.7e-10  Score=74.52  Aligned_cols=44  Identities=41%  Similarity=1.105  Sum_probs=36.7

Q ss_pred             cccccccccccCCccEEeCCCCccChhhHHHHHhc-CCCCCCccccc
Q 021283          233 ECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDE-HNSCPICRHEL  278 (314)
Q Consensus       233 ~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~-~~tCPvCR~~l  278 (314)
                      +|+||++.+  .......+|+|.||..|+..|+.. ...||+||..+
T Consensus         1 ~C~iC~~~~--~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEF--REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhh--hCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence            599999998  244555559999999999999997 77899999764

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.90  E-value=7.5e-10  Score=74.26  Aligned_cols=39  Identities=36%  Similarity=1.048  Sum_probs=33.3

Q ss_pred             ccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCc
Q 021283          234 CAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPIC  274 (314)
Q Consensus       234 C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvC  274 (314)
                      |+||++.+.  +.++.++|||.||..||..|+..+..||+|
T Consensus         1 C~iC~~~~~--~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELR--DPVVVTPCGHSFCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-S--SEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCccc--CcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence            899999984  355789999999999999999998899998

>smart00504 Ubox Modified RING finger domain

Probab=98.86  E-value=3.4e-09  Score=77.50  Aligned_cols=50  Identities=24%  Similarity=0.428  Sum_probs=43.0

Q ss_pred             ccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCCCcc
Q 021283          232 AECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHA  284 (314)
Q Consensus       232 ~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d~~  284 (314)
                      ..|+||.+.+.   .++.+||||+|++.||..|+..+.+||+|+.++..++..
T Consensus         2 ~~Cpi~~~~~~---~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~   51 (63)
T smart00504        2 FLCPISLEVMK---DPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLI   51 (63)
T ss_pred             cCCcCCCCcCC---CCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhce
Confidence            47999999984   367889999999999999999989999999998655433

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.84  E-value=1.2e-09  Score=102.24  Aligned_cols=51  Identities=31%  Similarity=0.814  Sum_probs=44.6

Q ss_pred             CcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCCCc
Q 021283          230 HDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDH  283 (314)
Q Consensus       230 ~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d~  283 (314)
                      .+..|.|||+..   ..+.-+||||+||-.||..|......||+||..+.+.+.
T Consensus       238 a~~kC~LCLe~~---~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~pskv  288 (293)
T KOG0317|consen  238 ATRKCSLCLENR---SNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQPSKV  288 (293)
T ss_pred             CCCceEEEecCC---CCCCcCcCcchHHHHHHHHHHccccCCCcccccCCCcce
Confidence            357899999996   456779999999999999999999999999999877653

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.83  E-value=1.6e-09  Score=95.00  Aligned_cols=51  Identities=27%  Similarity=0.663  Sum_probs=42.8

Q ss_pred             CcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCC
Q 021283          230 HDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTD  281 (314)
Q Consensus       230 ~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~  281 (314)
                      ....|||||+.+.. ..++...|||+||..||..-++....||+||..|..+
T Consensus       130 ~~~~CPiCl~~~se-k~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k  180 (187)
T KOG0320|consen  130 GTYKCPICLDSVSE-KVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHK  180 (187)
T ss_pred             cccCCCceecchhh-ccccccccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence            45799999999853 2346678999999999999999999999999877543

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.83  E-value=2.2e-09  Score=73.49  Aligned_cols=38  Identities=39%  Similarity=0.906  Sum_probs=29.8

Q ss_pred             ccccccccccCCccEEeCCCCccChhhHHHHHhcC----CCCCCc
Q 021283          234 CAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEH----NSCPIC  274 (314)
Q Consensus       234 C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~----~tCPvC  274 (314)
                      |+||++.|   ..++.|+|||.||..||..|++..    ..||.|
T Consensus         1 CpiC~~~~---~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLF---KDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB----SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhh---CCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            89999999   568999999999999999998853    369988

>PHA02926 zinc finger-like protein; Provisional

Probab=98.82  E-value=2e-09  Score=97.66  Aligned_cols=55  Identities=29%  Similarity=0.779  Sum_probs=40.7

Q ss_pred             hhhcCCcccccccccccccC-----CccEEe-CCCCccChhhHHHHHhcC------CCCCCcccccC
Q 021283          225 LDKLGHDAECAICKENLLVG-----DKMQEL-PCKHTFHPPCLKPWLDEH------NSCPICRHELQ  279 (314)
Q Consensus       225 ~~~~~~~~~C~ICLe~~~~~-----~~v~~L-PCgH~FH~~CI~~WL~~~------~tCPvCR~~l~  279 (314)
                      .-....+.+|+||++..-..     .....| +|+|.||..||..|...+      .+||+||..+.
T Consensus       164 ~~~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~  230 (242)
T PHA02926        164 VYRVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR  230 (242)
T ss_pred             HHhccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence            33445688999999986322     123445 599999999999998743      36999998764

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=2.4e-09  Score=97.47  Aligned_cols=50  Identities=32%  Similarity=0.731  Sum_probs=41.1

Q ss_pred             cCCcccccccccccccCCccEEeCCCCccChhhHHHHHhcC---CCCCCcccccCC
Q 021283          228 LGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEH---NSCPICRHELQT  280 (314)
Q Consensus       228 ~~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~---~tCPvCR~~l~~  280 (314)
                      .+..++|.|||+.-   ..++...|||+||-.||.+||..+   ..||+||..|..
T Consensus        44 ~~~~FdCNICLd~a---kdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~   96 (230)
T KOG0823|consen   44 DGGFFDCNICLDLA---KDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSI   96 (230)
T ss_pred             CCCceeeeeecccc---CCCEEeecccceehHHHHHHHhhcCCCeeCCcccccccc
Confidence            35578999999985   346677799999999999999853   378999998853

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=98.80  E-value=3.3e-09  Score=83.03  Aligned_cols=51  Identities=33%  Similarity=0.813  Sum_probs=39.6

Q ss_pred             Cccccccccccccc--------CC--ccEEeCCCCccChhhHHHHHhc---CCCCCCcccccCC
Q 021283          230 HDAECAICKENLLV--------GD--KMQELPCKHTFHPPCLKPWLDE---HNSCPICRHELQT  280 (314)
Q Consensus       230 ~~~~C~ICLe~~~~--------~~--~v~~LPCgH~FH~~CI~~WL~~---~~tCPvCR~~l~~  280 (314)
                      .+..|.||...|..        ++  .++.-.|+|.||..||.+||..   +..||+||++...
T Consensus        20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~   83 (85)
T PF12861_consen   20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF   83 (85)
T ss_pred             CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence            47789999988862        22  2344459999999999999985   4689999998753

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=2e-09  Score=110.48  Aligned_cols=49  Identities=43%  Similarity=1.064  Sum_probs=43.9

Q ss_pred             CcccccccccccccCCc--cEEeCCCCccChhhHHHHHhcCCCCCCccccc
Q 021283          230 HDAECAICKENLLVGDK--MQELPCKHTFHPPCLKPWLDEHNSCPICRHEL  278 (314)
Q Consensus       230 ~~~~C~ICLe~~~~~~~--v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l  278 (314)
                      .+..|+||++.+..+..  +.+|||+|+||..|+..|+++.++||+||..+
T Consensus       290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~  340 (543)
T KOG0802|consen  290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVL  340 (543)
T ss_pred             cCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhh
Confidence            47899999999976544  78899999999999999999999999999944

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.73  E-value=7.3e-09  Score=71.34  Aligned_cols=44  Identities=34%  Similarity=0.726  Sum_probs=38.4

Q ss_pred             cccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCccc
Q 021283          233 ECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRH  276 (314)
Q Consensus       233 ~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~  276 (314)
                      .|+||++.|........++|||+||..|+..+......||+||+
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence            49999999955567888999999999999999866779999984

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.70  E-value=8.4e-09  Score=101.67  Aligned_cols=51  Identities=33%  Similarity=0.693  Sum_probs=44.1

Q ss_pred             cCCcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCC
Q 021283          228 LGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTD  281 (314)
Q Consensus       228 ~~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~  281 (314)
                      +.....|+||++.|.   .++.++|+|.||..||..|+.....||+||..+...
T Consensus        23 Le~~l~C~IC~d~~~---~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~   73 (397)
T TIGR00599        23 LDTSLRCHICKDFFD---VPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQES   73 (397)
T ss_pred             cccccCCCcCchhhh---CccCCCCCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence            455789999999984   356789999999999999999888999999988654

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>smart00184 RING Ring finger

Probab=98.67  E-value=1.6e-08  Score=65.34  Aligned_cols=38  Identities=50%  Similarity=1.226  Sum_probs=33.6

Q ss_pred             ccccccccccCCccEEeCCCCccChhhHHHHHh-cCCCCCCc
Q 021283          234 CAICKENLLVGDKMQELPCKHTFHPPCLKPWLD-EHNSCPIC  274 (314)
Q Consensus       234 C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~-~~~tCPvC  274 (314)
                      |+||++..   ...+.++|+|.||..|+..|+. ....||+|
T Consensus         1 C~iC~~~~---~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEEL---KDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCC---CCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            89999984   5688899999999999999998 66789998

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.64  E-value=1.6e-08  Score=68.05  Aligned_cols=39  Identities=41%  Similarity=1.049  Sum_probs=33.3

Q ss_pred             ccccccccccCCccEEeCCCCccChhhHHHHHh--cCCCCCCc
Q 021283          234 CAICKENLLVGDKMQELPCKHTFHPPCLKPWLD--EHNSCPIC  274 (314)
Q Consensus       234 C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~--~~~tCPvC  274 (314)
                      |+||++.+..  ....++|+|.||..||..|++  ....||+|
T Consensus         1 C~iC~~~~~~--~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFED--PVILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSS--EEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccC--CCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            8999999843  335889999999999999999  55689998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.54  E-value=2.6e-08  Score=99.44  Aligned_cols=63  Identities=29%  Similarity=0.571  Sum_probs=48.5

Q ss_pred             cccccccccccccCCccEEeCCCCccChhhHHHHHhc-----CCCCCCcccccCCCCcchhhHHHHHHHHH
Q 021283          231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDE-----HNSCPICRHELQTDDHAYESWKEREKEAQ  296 (314)
Q Consensus       231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~-----~~tCPvCR~~l~~~d~~~~~~~~r~~~~~  296 (314)
                      +..|||||+...   ....+.|||+||..||.+++..     ...||+||..|..+|-..-.|....+.++
T Consensus       186 ~~~CPICL~~~~---~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke~  253 (513)
T KOG2164|consen  186 DMQCPICLEPPS---VPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQKKEE  253 (513)
T ss_pred             CCcCCcccCCCC---cccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccccccHH
Confidence            679999999963   3555669999999999997763     45899999999887776666655544433

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=98.47  E-value=5.1e-08  Score=93.07  Aligned_cols=54  Identities=30%  Similarity=0.611  Sum_probs=46.6

Q ss_pred             cCCcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCCCcc
Q 021283          228 LGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHA  284 (314)
Q Consensus       228 ~~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d~~  284 (314)
                      +++-..|-||.+.|.   .+++.||+|.||.-||+.+|..+..||.|+.++...+..
T Consensus        20 lD~lLRC~IC~eyf~---ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr   73 (442)
T KOG0287|consen   20 LDDLLRCGICFEYFN---IPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLR   73 (442)
T ss_pred             hHHHHHHhHHHHHhc---CceeccccchHHHHHHHHHhccCCCCCceecccchhhhh
Confidence            344679999999994   488899999999999999999999999999998765543

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=98.44  E-value=1.7e-07  Score=71.46  Aligned_cols=54  Identities=24%  Similarity=0.458  Sum_probs=41.1

Q ss_pred             cccccccccccccCCccEEeCCCCccChhhHHHHHhc-CCCCCCcccccCCCCcchhh
Q 021283          231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDE-HNSCPICRHELQTDDHAYES  287 (314)
Q Consensus       231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~-~~tCPvCR~~l~~~d~~~~~  287 (314)
                      .+.|+||.+-|   ..++.+||||.|.+.||..||.. +.+||+|+.++...+.-...
T Consensus         4 ~f~CpIt~~lM---~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~   58 (73)
T PF04564_consen    4 EFLCPITGELM---RDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNR   58 (73)
T ss_dssp             GGB-TTTSSB----SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-H
T ss_pred             ccCCcCcCcHh---hCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECH
Confidence            57899999999   45888999999999999999998 88999999998766544433

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=3.4e-08  Score=91.74  Aligned_cols=61  Identities=26%  Similarity=0.791  Sum_probs=47.8

Q ss_pred             CcccccccccccccCC-------ccEEeCCCCccChhhHHHHH--hcCCCCCCcccccCCCCcchhhHHH
Q 021283          230 HDAECAICKENLLVGD-------KMQELPCKHTFHPPCLKPWL--DEHNSCPICRHELQTDDHAYESWKE  290 (314)
Q Consensus       230 ~~~~C~ICLe~~~~~~-------~v~~LPCgH~FH~~CI~~WL--~~~~tCPvCR~~l~~~d~~~~~~~~  290 (314)
                      ++..|.||-..+....       +...|.|+|+||..||+.|-  ..+.+||+|+..+..+.-..+.|.+
T Consensus       223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsnpWek  292 (328)
T KOG1734|consen  223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNPWEK  292 (328)
T ss_pred             CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccCcccc
Confidence            4679999998886544       57889999999999999994  4788999999887655544444443

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=98.40  E-value=1.1e-07  Score=89.27  Aligned_cols=50  Identities=30%  Similarity=0.638  Sum_probs=43.4

Q ss_pred             hcCCcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccC
Q 021283          227 KLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQ  279 (314)
Q Consensus       227 ~~~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~  279 (314)
                      .++.-..|-||-+.|.   .++..+|||.||.-||+.+|..+..||+||.+..
T Consensus        21 ~LDs~lrC~IC~~~i~---ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~   70 (391)
T COG5432          21 GLDSMLRCRICDCRIS---IPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPC   70 (391)
T ss_pred             cchhHHHhhhhhheee---cceecccccchhHHHHHHHhcCCCCCccccccHH
Confidence            3445679999999994   4778899999999999999999999999998764

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.36  E-value=6.2e-08  Score=73.93  Aligned_cols=51  Identities=35%  Similarity=0.826  Sum_probs=38.0

Q ss_pred             Cccccccccccccc--------CC-ccEEeC-CCCccChhhHHHHHhc---CCCCCCcccccCC
Q 021283          230 HDAECAICKENLLV--------GD-KMQELP-CKHTFHPPCLKPWLDE---HNSCPICRHELQT  280 (314)
Q Consensus       230 ~~~~C~ICLe~~~~--------~~-~v~~LP-CgH~FH~~CI~~WL~~---~~tCPvCR~~l~~  280 (314)
                      .+..|-||.-.|..        ++ -+..+. |.|.||..||.+|+..   +..||+||+....
T Consensus        19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~   82 (84)
T KOG1493|consen   19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQF   82 (84)
T ss_pred             CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEe
Confidence            35589999888753        22 233344 9999999999999983   5589999987653

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=1.8e-07  Score=86.84  Aligned_cols=49  Identities=31%  Similarity=0.747  Sum_probs=41.3

Q ss_pred             cccccccccccccCCccEEeCCCCccChhhHHH-HHhcCC-CCCCcccccCCCC
Q 021283          231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKP-WLDEHN-SCPICRHELQTDD  282 (314)
Q Consensus       231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~-WL~~~~-tCPvCR~~l~~~d  282 (314)
                      +..|+||++..   ..+..+||||+||..||.. |-..+. .||+||+.+.+.+
T Consensus       215 d~kC~lC~e~~---~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~  265 (271)
T COG5574         215 DYKCFLCLEEP---EVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK  265 (271)
T ss_pred             ccceeeeeccc---CCcccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence            78999999987   5577899999999999999 977665 5999999876543

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=98.34  E-value=5e-07  Score=86.24  Aligned_cols=52  Identities=27%  Similarity=0.570  Sum_probs=38.3

Q ss_pred             cccccccccc-cccCC-ccEEeCCCCccChhhHHHHHh-cCCCCCCcccccCCCC
Q 021283          231 DAECAICKEN-LLVGD-KMQELPCKHTFHPPCLKPWLD-EHNSCPICRHELQTDD  282 (314)
Q Consensus       231 ~~~C~ICLe~-~~~~~-~v~~LPCgH~FH~~CI~~WL~-~~~tCPvCR~~l~~~d  282 (314)
                      +..||||... +...+ .....+|||.||..|+...+. ....||.|+.++...+
T Consensus         3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~   57 (309)
T TIGR00570         3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN   57 (309)
T ss_pred             CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence            5689999985 22222 223338999999999999654 5568999999887655

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=98.34  E-value=2.9e-07  Score=70.89  Aligned_cols=31  Identities=35%  Similarity=0.893  Sum_probs=27.9

Q ss_pred             CCCCccChhhHHHHHhcCCCCCCcccccCCC
Q 021283          251 PCKHTFHPPCLKPWLDEHNSCPICRHELQTD  281 (314)
Q Consensus       251 PCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~  281 (314)
                      -|+|.||..||.+||..++.||+||++....
T Consensus        53 ~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~   83 (88)
T COG5194          53 VCNHAFHDHCIYRWLDTKGVCPLDRQTWVLA   83 (88)
T ss_pred             ecchHHHHHHHHHHHhhCCCCCCCCceeEEe
Confidence            3999999999999999999999999977543

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.32  E-value=3.1e-07  Score=63.23  Aligned_cols=38  Identities=37%  Similarity=0.816  Sum_probs=22.8

Q ss_pred             cccccccccc-CCccEEeCCCCccChhhHHHHHhcC----CCCC
Q 021283          234 CAICKENLLV-GDKMQELPCKHTFHPPCLKPWLDEH----NSCP  272 (314)
Q Consensus       234 C~ICLe~~~~-~~~v~~LPCgH~FH~~CI~~WL~~~----~tCP  272 (314)
                      |+||.+ |.. ...++.|+|||+|+..||.+++..+    ..||
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence            999999 744 3457889999999999999999843    2576

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=2e-07  Score=92.69  Aligned_cols=50  Identities=36%  Similarity=0.905  Sum_probs=39.3

Q ss_pred             ccccccccccccc---CC-----------ccEEeCCCCccChhhHHHHHh-cCCCCCCcccccCC
Q 021283          231 DAECAICKENLLV---GD-----------KMQELPCKHTFHPPCLKPWLD-EHNSCPICRHELQT  280 (314)
Q Consensus       231 ~~~C~ICLe~~~~---~~-----------~v~~LPCgH~FH~~CI~~WL~-~~~tCPvCR~~l~~  280 (314)
                      ...|+||+..+.-   +.           .-...||.|+||..|+.+|+. .+-.||+||.++++
T Consensus       571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp  635 (636)
T KOG0828|consen  571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP  635 (636)
T ss_pred             cccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence            5689999987642   11           123459999999999999999 45599999999975

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=5.5e-07  Score=81.59  Aligned_cols=46  Identities=37%  Similarity=0.767  Sum_probs=39.6

Q ss_pred             cCCcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCccc
Q 021283          228 LGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRH  276 (314)
Q Consensus       228 ~~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~  276 (314)
                      ..+...|+||++.|...   ..+||+|.||..||..++.....||.||.
T Consensus        10 ~~~~~~C~iC~~~~~~p---~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~   55 (386)
T KOG2177|consen   10 LQEELTCPICLEYFREP---VLLPCGHNFCRACLTRSWEGPLSCPVCRP   55 (386)
T ss_pred             ccccccChhhHHHhhcC---ccccccchHhHHHHHHhcCCCcCCcccCC
Confidence            44678999999999653   88999999999999999885568999993

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=7.4e-07  Score=71.81  Aligned_cols=49  Identities=31%  Similarity=0.764  Sum_probs=36.9

Q ss_pred             Cccccccccccccc-------------CCccEEeC-CCCccChhhHHHHHhcCCCCCCccccc
Q 021283          230 HDAECAICKENLLV-------------GDKMQELP-CKHTFHPPCLKPWLDEHNSCPICRHEL  278 (314)
Q Consensus       230 ~~~~C~ICLe~~~~-------------~~~v~~LP-CgH~FH~~CI~~WL~~~~tCPvCR~~l  278 (314)
                      ....|+||..-+-.             ++-.+.-. |.|.||..||.+||+....||+|..+.
T Consensus        45 ~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW  107 (114)
T KOG2930|consen   45 VVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEW  107 (114)
T ss_pred             eechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence            35789999764321             12233333 999999999999999999999997754

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=98.14  E-value=1.5e-06  Score=61.42  Aligned_cols=42  Identities=31%  Similarity=0.829  Sum_probs=33.3

Q ss_pred             cccccccccccCCccEEeCCC-----CccChhhHHHHHhcC--CCCCCcc
Q 021283          233 ECAICKENLLVGDKMQELPCK-----HTFHPPCLKPWLDEH--NSCPICR  275 (314)
Q Consensus       233 ~C~ICLe~~~~~~~v~~LPCg-----H~FH~~CI~~WL~~~--~tCPvCR  275 (314)
                      .|.||++ ...++.....||.     |.+|..|+.+|+..+  .+||+|+
T Consensus         1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            4899998 3344556788985     899999999999754  4899995

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=98.08  E-value=1.4e-06  Score=85.97  Aligned_cols=48  Identities=31%  Similarity=0.802  Sum_probs=38.3

Q ss_pred             CcccccccccccccCC-ccEEeCCCCccChhhHHHHHhcCCCCCCcccccC
Q 021283          230 HDAECAICKENLLVGD-KMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQ  279 (314)
Q Consensus       230 ~~~~C~ICLe~~~~~~-~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~  279 (314)
                      +-.+|||||+.+.... .++...|.|.||..|+..|.  ..+||+||.-..
T Consensus       174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~--~~scpvcR~~q~  222 (493)
T KOG0804|consen  174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW--DSSCPVCRYCQS  222 (493)
T ss_pred             cCCCcchhHhhcCccccceeeeecccccchHHHhhcc--cCcChhhhhhcC
Confidence            4579999999996533 24455599999999999994  578999998665

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=98.06  E-value=1.2e-06  Score=92.63  Aligned_cols=53  Identities=34%  Similarity=0.830  Sum_probs=40.0

Q ss_pred             cCCccccccccccccc-CC--ccEEeC-CCCccChhhHHHHHhc--CCCCCCcccccCC
Q 021283          228 LGHDAECAICKENLLV-GD--KMQELP-CKHTFHPPCLKPWLDE--HNSCPICRHELQT  280 (314)
Q Consensus       228 ~~~~~~C~ICLe~~~~-~~--~v~~LP-CgH~FH~~CI~~WL~~--~~tCPvCR~~l~~  280 (314)
                      .....+|+||...+.. +.  +-.+.| |.|-||..|+-+|++.  +++||+||..++.
T Consensus      1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219        1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred             cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence            4567899999987752 12  122334 9999999999999985  5589999988763

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.00  E-value=2.5e-06  Score=80.58  Aligned_cols=59  Identities=27%  Similarity=0.483  Sum_probs=45.8

Q ss_pred             cccccccccccccCCccEEeCCCCccChhhHHHHHh-cCCCCCCcccccCCCCcchhhHHHHH
Q 021283          231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLD-EHNSCPICRHELQTDDHAYESWKERE  292 (314)
Q Consensus       231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~-~~~tCPvCR~~l~~~d~~~~~~~~r~  292 (314)
                      +.+|+||++..   ..++.|+|+|.||.-||..-.. ...+|++||.+|...=...+.-+.+-
T Consensus         7 ~~eC~IC~nt~---n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~~~psl~~~L   66 (324)
T KOG0824|consen    7 KKECLICYNTG---NCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTIDFEPSLKYRL   66 (324)
T ss_pred             CCcceeeeccC---CcCccccccchhhhhhhcchhhcCCCCCceecCCCCcchhcchhhhhhh
Confidence            56999999997   4468899999999999987554 45679999999976555555555443

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=97.99  E-value=1.4e-06  Score=66.07  Aligned_cols=49  Identities=31%  Similarity=0.730  Sum_probs=23.3

Q ss_pred             cccccccccccc-cCCc-cEEe---CCCCccChhhHHHHHhc---C--------CCCCCcccccC
Q 021283          231 DAECAICKENLL-VGDK-MQEL---PCKHTFHPPCLKPWLDE---H--------NSCPICRHELQ  279 (314)
Q Consensus       231 ~~~C~ICLe~~~-~~~~-v~~L---PCgH~FH~~CI~~WL~~---~--------~tCPvCR~~l~  279 (314)
                      +.+|.||+..+. .+.. ....   .|++.||..|+..||..   .        +.||.|+.+|.
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~   66 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS   66 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence            458999999875 2222 2222   39999999999999872   1        15999999885

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.95  E-value=4.8e-06  Score=80.35  Aligned_cols=46  Identities=35%  Similarity=0.814  Sum_probs=39.9

Q ss_pred             cccccccccccccCCccEEeCCCCc-cChhhHHHHHhcCCCCCCcccccC
Q 021283          231 DAECAICKENLLVGDKMQELPCKHT-FHPPCLKPWLDEHNSCPICRHELQ  279 (314)
Q Consensus       231 ~~~C~ICLe~~~~~~~v~~LPCgH~-FH~~CI~~WL~~~~tCPvCR~~l~  279 (314)
                      ..+|.||+.+-   ..++.|||.|. .|..|.+..--+++.||+||+++.
T Consensus       290 gkeCVIClse~---rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~  336 (349)
T KOG4265|consen  290 GKECVICLSES---RDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIE  336 (349)
T ss_pred             CCeeEEEecCC---cceEEecchhhehhHhHHHHHHHhhcCCCccccchH
Confidence            57999999986   45899999997 899999886667888999999885

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.87  E-value=5.3e-06  Score=80.73  Aligned_cols=48  Identities=35%  Similarity=0.910  Sum_probs=35.3

Q ss_pred             cccccccccccccCCccEEeC-CCCccChhhHHHHHhc---CCCCCCccccc
Q 021283          231 DAECAICKENLLVGDKMQELP-CKHTFHPPCLKPWLDE---HNSCPICRHEL  278 (314)
Q Consensus       231 ~~~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~WL~~---~~tCPvCR~~l  278 (314)
                      ...|.||-+-+.....+.... |||+||..|+.+|+..   +..||+||-.+
T Consensus         4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~   55 (465)
T KOG0827|consen    4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKL   55 (465)
T ss_pred             cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecc
Confidence            358999944443334455555 9999999999999984   35899999333

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.77  E-value=5e-06  Score=59.74  Aligned_cols=46  Identities=30%  Similarity=0.650  Sum_probs=35.8

Q ss_pred             cccccccccccccCCccEEeCCCCc-cChhhHHHHHh-cCCCCCCcccccC
Q 021283          231 DAECAICKENLLVGDKMQELPCKHT-FHPPCLKPWLD-EHNSCPICRHELQ  279 (314)
Q Consensus       231 ~~~C~ICLe~~~~~~~v~~LPCgH~-FH~~CI~~WL~-~~~tCPvCR~~l~  279 (314)
                      +.+|.||++.-.   .-+...|||+ .|..|-...++ .+..||+||.+|.
T Consensus         7 ~dECTICye~pv---dsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~   54 (62)
T KOG4172|consen    7 SDECTICYEHPV---DSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK   54 (62)
T ss_pred             ccceeeeccCcc---hHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence            479999999853   2345669997 88999666555 7899999999874

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=97.77  E-value=5e-06  Score=61.79  Aligned_cols=50  Identities=24%  Similarity=0.603  Sum_probs=24.6

Q ss_pred             cccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCCCcc
Q 021283          231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHA  284 (314)
Q Consensus       231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d~~  284 (314)
                      -..|++|.+.+.  +.+....|.|+||..||..-+.  ..||+|+.+.-..|..
T Consensus         7 lLrCs~C~~~l~--~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD~~   56 (65)
T PF14835_consen    7 LLRCSICFDILK--EPVCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQDIQ   56 (65)
T ss_dssp             TTS-SSS-S--S--S-B---SSS--B-TTTGGGGTT--TB-SSS--B-S-SS--
T ss_pred             hcCCcHHHHHhc--CCceeccCccHHHHHHhHHhcC--CCCCCcCChHHHHHHH
Confidence            468999999984  3333455999999999988655  3599999987666643

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.76  E-value=3.5e-06  Score=81.08  Aligned_cols=50  Identities=32%  Similarity=0.632  Sum_probs=39.8

Q ss_pred             cCCcccccccccccccCCccEEeC-CCCccChhhHHHHHhc-CCCCCCcccccCC
Q 021283          228 LGHDAECAICKENLLVGDKMQELP-CKHTFHPPCLKPWLDE-HNSCPICRHELQT  280 (314)
Q Consensus       228 ~~~~~~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~WL~~-~~tCPvCR~~l~~  280 (314)
                      +..+..|+|||.-+.   ..+..+ |.|.||..||..-|+. +.+||.||..+.+
T Consensus        40 ~~~~v~c~icl~llk---~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~S   91 (381)
T KOG0311|consen   40 FDIQVICPICLSLLK---KTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVS   91 (381)
T ss_pred             hhhhhccHHHHHHHH---hhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccc
Confidence            345789999999984   334444 9999999999998874 6699999987753

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.74  E-value=7.4e-06  Score=79.61  Aligned_cols=50  Identities=34%  Similarity=0.877  Sum_probs=38.0

Q ss_pred             CcccccccccccccCC----ccEEeC-CCCccChhhHHHHH--hc-----CCCCCCcccccC
Q 021283          230 HDAECAICKENLLVGD----KMQELP-CKHTFHPPCLKPWL--DE-----HNSCPICRHELQ  279 (314)
Q Consensus       230 ~~~~C~ICLe~~~~~~----~v~~LP-CgH~FH~~CI~~WL--~~-----~~tCPvCR~~l~  279 (314)
                      .+..|.||++.....-    .-.+|| |.|.||..||+.|-  ++     ...||.||....
T Consensus       160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~  221 (344)
T KOG1039|consen  160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS  221 (344)
T ss_pred             ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence            4679999999874322    133456 99999999999996  44     468999998664

>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=97.73  E-value=1.3e-05  Score=75.76  Aligned_cols=54  Identities=24%  Similarity=0.682  Sum_probs=44.3

Q ss_pred             CCcccccccccccccCCccEEeCCCCccChhhHHHHHh-----------------------cCCCCCCcccccCCCC
Q 021283          229 GHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLD-----------------------EHNSCPICRHELQTDD  282 (314)
Q Consensus       229 ~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~-----------------------~~~tCPvCR~~l~~~d  282 (314)
                      .....|.|||.-|..++....++|-|.||..|+..+|.                       ....||+||..|..+.
T Consensus       113 ~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~  189 (368)
T KOG4445|consen  113 HPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEE  189 (368)
T ss_pred             CCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccccc
Confidence            34679999999999888889999999999999987764                       1125999999886544

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.70  E-value=3.1e-05  Score=75.88  Aligned_cols=52  Identities=27%  Similarity=0.839  Sum_probs=39.8

Q ss_pred             ccccccccccccc-CC-ccEEeCCCCccChhhHHHHHhc--CCCCCCcccccCCCC
Q 021283          231 DAECAICKENLLV-GD-KMQELPCKHTFHPPCLKPWLDE--HNSCPICRHELQTDD  282 (314)
Q Consensus       231 ~~~C~ICLe~~~~-~~-~v~~LPCgH~FH~~CI~~WL~~--~~tCPvCR~~l~~~d  282 (314)
                      ..+||||++.+.. ++ .++.+.|||.|...||..||.+  ...||.|...-...+
T Consensus         4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~   59 (463)
T KOG1645|consen    4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQ   59 (463)
T ss_pred             cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHH
Confidence            4689999999864 33 3666779999999999999963  237999987654333

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=97.63  E-value=1.4e-05  Score=83.43  Aligned_cols=54  Identities=19%  Similarity=0.551  Sum_probs=44.0

Q ss_pred             hcCCcccccccccccccCCccEEeCCCCccChhhHHHHHh-cCCCCCCcccccCCCCc
Q 021283          227 KLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLD-EHNSCPICRHELQTDDH  283 (314)
Q Consensus       227 ~~~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~-~~~tCPvCR~~l~~~d~  283 (314)
                      .+..-..||+|-..++   .+++..|+|.||..||.+-+. ++..||.|-..+.+-|.
T Consensus       639 ~yK~~LkCs~Cn~R~K---d~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv  693 (698)
T KOG0978|consen  639 EYKELLKCSVCNTRWK---DAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDV  693 (698)
T ss_pred             HHHhceeCCCccCchh---hHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccc
Confidence            3445679999998874   366677999999999999887 68899999999876653

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=97.58  E-value=1.4e-05  Score=83.32  Aligned_cols=49  Identities=22%  Similarity=0.474  Sum_probs=41.7

Q ss_pred             cccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccC
Q 021283          231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQ  279 (314)
Q Consensus       231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~  279 (314)
                      ...|+||+..+.........+|+|+||..||..|-+.-.+||+||..+.
T Consensus       123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~  171 (1134)
T KOG0825|consen  123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFG  171 (1134)
T ss_pred             hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhh
Confidence            4589999999875555555679999999999999999999999998764

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.41  E-value=7.1e-05  Score=74.19  Aligned_cols=48  Identities=38%  Similarity=0.835  Sum_probs=42.7

Q ss_pred             CcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCC
Q 021283          230 HDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQT  280 (314)
Q Consensus       230 ~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~  280 (314)
                      .+++|.||+..+   ..++.+||||.||..||.+-+.....||.||..+..
T Consensus        83 sef~c~vc~~~l---~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e  130 (398)
T KOG4159|consen   83 SEFECCVCSRAL---YPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE  130 (398)
T ss_pred             chhhhhhhHhhc---CCCccccccccccHHHHHHHhccCCCCccccccccc
Confidence            478999999888   457788999999999999988888899999999875

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=97.28  E-value=8.9e-05  Score=72.61  Aligned_cols=46  Identities=37%  Similarity=0.904  Sum_probs=38.3

Q ss_pred             ccccccccccccCCccEEeCCCCccChhhHHHHHhc--CCCCCCcccccCC
Q 021283          232 AECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDE--HNSCPICRHELQT  280 (314)
Q Consensus       232 ~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~--~~tCPvCR~~l~~  280 (314)
                      ..|-||-+.=   ..+.+-||||..|..|+..|-..  ..+||.||.+|.-
T Consensus       370 eLCKICaend---KdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG  417 (563)
T KOG1785|consen  370 ELCKICAEND---KDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG  417 (563)
T ss_pred             HHHHHhhccC---CCcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence            4699999873   34778899999999999999753  5699999998853

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=97.14  E-value=0.00023  Score=70.58  Aligned_cols=54  Identities=33%  Similarity=0.711  Sum_probs=43.4

Q ss_pred             CCcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCCCcc
Q 021283          229 GHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHA  284 (314)
Q Consensus       229 ~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d~~  284 (314)
                      ..+..|+||...+..  .+....|||.||..|+..|+..+..||.|+..+.....-
T Consensus        19 ~~~l~C~~C~~vl~~--p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~   72 (391)
T KOG0297|consen   19 DENLLCPICMSVLRD--PVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEEL   72 (391)
T ss_pred             cccccCccccccccC--CCCCCCCCCcccccccchhhccCcCCcccccccchhhcc
Confidence            456899999999853  232357999999999999999999999999888644433

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=97.07  E-value=0.00025  Score=51.68  Aligned_cols=41  Identities=22%  Similarity=0.613  Sum_probs=28.3

Q ss_pred             cccccccccccccCCccEEeCCCCccChhhHHHHHhc--CCCCCC
Q 021283          231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDE--HNSCPI  273 (314)
Q Consensus       231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~--~~tCPv  273 (314)
                      ...|||.+..|.  ++++...|+|+|-+..|..||..  ...||+
T Consensus        11 ~~~CPiT~~~~~--~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen   11 SLKCPITLQPFE--DPVKSKKCGHTFEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             -SB-TTTSSB-S--SEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred             ccCCCCcCChhh--CCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence            568999999985  55666679999999999999943  447998

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=96.84  E-value=0.0011  Score=63.08  Aligned_cols=65  Identities=26%  Similarity=0.491  Sum_probs=46.2

Q ss_pred             ccccccccccccCCccEEeC-CCCccChhhHHHHHh-cCCCCCCccc-ccC--CCCcchhhHHHHHHHHHHHH
Q 021283          232 AECAICKENLLVGDKMQELP-CKHTFHPPCLKPWLD-EHNSCPICRH-ELQ--TDDHAYESWKEREKEAQEER  299 (314)
Q Consensus       232 ~~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~WL~-~~~tCPvCR~-~l~--~~d~~~~~~~~r~~~~~~e~  299 (314)
                      ..|+.|..-+.   ..+..| |+|.||..||..-|. ....||.|-. .|.  .-.++++..+|-|+.-+..+
T Consensus       275 LkCplc~~Llr---np~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkkq~  344 (427)
T COG5222         275 LKCPLCHCLLR---NPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKKQR  344 (427)
T ss_pred             ccCcchhhhhh---CcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHHHH
Confidence            68999998873   355567 999999999987655 6679999944 443  44556666666666644333

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.71  E-value=0.0012  Score=62.10  Aligned_cols=48  Identities=23%  Similarity=0.468  Sum_probs=37.3

Q ss_pred             CcccccccccccccCCccEEeCCCCccChhhHHHHHhc--CCCCCCcccccC
Q 021283          230 HDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDE--HNSCPICRHELQ  279 (314)
Q Consensus       230 ~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~--~~tCPvCR~~l~  279 (314)
                      .+.+|++|-+.-.  -+-+..+|+|+||..||..-+..  ..+||.|-.++.
T Consensus       238 ~~~~C~~Cg~~Pt--iP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  238 SDTECPVCGEPPT--IPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             CCceeeccCCCCC--CCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            4679999998842  34455679999999999886553  469999988775

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.64  E-value=0.00097  Score=64.65  Aligned_cols=49  Identities=22%  Similarity=0.468  Sum_probs=42.7

Q ss_pred             CCcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCC
Q 021283          229 GHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQT  280 (314)
Q Consensus       229 ~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~  280 (314)
                      .++..||||.-.-   -..+..||+|.-|+.||.+.|-....|=.|++.+.+
T Consensus       420 sEd~lCpICyA~p---i~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~  468 (489)
T KOG4692|consen  420 SEDNLCPICYAGP---INAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID  468 (489)
T ss_pred             cccccCcceeccc---chhhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence            3578999998764   457788999999999999999999999999998874

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=96.61  E-value=0.0013  Score=72.83  Aligned_cols=51  Identities=33%  Similarity=0.763  Sum_probs=40.8

Q ss_pred             CCcccccccccccccCCccEEeCCCCccChhhHHHHHhcC----------CCCCCcccccC
Q 021283          229 GHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEH----------NSCPICRHELQ  279 (314)
Q Consensus       229 ~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~----------~tCPvCR~~l~  279 (314)
                      +.+.-|-||+.+-...-+.+.|.|+|+||..|.+..|...          -+||+|+.+|.
T Consensus      3484 D~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred             ccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence            4567899999876666778899999999999998766531          27999998874

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.59  E-value=0.00067  Score=66.47  Aligned_cols=45  Identities=40%  Similarity=1.002  Sum_probs=37.5

Q ss_pred             cccccccccccccC-CccEEeCCCCccChhhHHHHHhcC--CCCCCcc
Q 021283          231 DAECAICKENLLVG-DKMQELPCKHTFHPPCLKPWLDEH--NSCPICR  275 (314)
Q Consensus       231 ~~~C~ICLe~~~~~-~~v~~LPCgH~FH~~CI~~WL~~~--~tCPvCR  275 (314)
                      ...|-.|-+.+.-. +...-|||.|+||..|+...|.++  .+||.||
T Consensus       365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Cr  412 (518)
T KOG1941|consen  365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCR  412 (518)
T ss_pred             hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHH
Confidence            56899999987543 357779999999999999999754  4899999

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=96.59  E-value=0.00051  Score=65.91  Aligned_cols=50  Identities=28%  Similarity=0.685  Sum_probs=40.6

Q ss_pred             cCCcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccC
Q 021283          228 LGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQ  279 (314)
Q Consensus       228 ~~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~  279 (314)
                      .....+|.+|--.|....  .+.-|-|.||+.||...|....+||.|...|-
T Consensus        12 ~n~~itC~LC~GYliDAT--TI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih   61 (331)
T KOG2660|consen   12 LNPHITCRLCGGYLIDAT--TITECLHTFCKSCIVKYLEESKYCPTCDIVIH   61 (331)
T ss_pred             cccceehhhccceeecch--hHHHHHHHHHHHHHHHHHHHhccCCccceecc
Confidence            455679999999985422  33449999999999999999999999987664

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=96.57  E-value=0.00078  Score=57.19  Aligned_cols=36  Identities=25%  Similarity=0.488  Sum_probs=31.2

Q ss_pred             cccccccccccccCCccEEeCCC------CccChhhHHHHHh
Q 021283          231 DAECAICKENLLVGDKMQELPCK------HTFHPPCLKPWLD  266 (314)
Q Consensus       231 ~~~C~ICLe~~~~~~~v~~LPCg------H~FH~~CI~~WL~  266 (314)
                      ..+|.||++.+...+.++.++|+      |+||..|+.+|-+
T Consensus        26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~   67 (134)
T PF05883_consen   26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR   67 (134)
T ss_pred             CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence            56999999999776678888887      8999999999943

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.52  E-value=0.00075  Score=58.94  Aligned_cols=43  Identities=33%  Similarity=0.796  Sum_probs=34.7

Q ss_pred             hCCCccchhHHhhhcCCcccccccccccccCCccEEeCCCCccCh
Q 021283          214 KLPVITLTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHP  258 (314)
Q Consensus       214 ~Lp~~~~~~~~~~~~~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~  258 (314)
                      .-|...|.++.+++  +.-+|.||||++..++.+.+|||-.+||+
T Consensus       162 tkPrlsYNdDVL~d--dkGECvICLEdL~~GdtIARLPCLCIYHK  204 (205)
T KOG0801|consen  162 TKPRLSYNDDVLKD--DKGECVICLEDLEAGDTIARLPCLCIYHK  204 (205)
T ss_pred             cccccccccchhcc--cCCcEEEEhhhccCCCceeccceEEEeec
Confidence            34666676665443  35699999999999999999999999996

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=96.41  E-value=0.001  Score=59.90  Aligned_cols=44  Identities=23%  Similarity=0.536  Sum_probs=37.9

Q ss_pred             cccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccc
Q 021283          231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHE  277 (314)
Q Consensus       231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~  277 (314)
                      -+.|.||-.+|.   .++...|||.||..|...-++....|-+|-..
T Consensus       196 PF~C~iCKkdy~---spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~  239 (259)
T COG5152         196 PFLCGICKKDYE---SPVVTECGHSFCSLCAIRKYQKGDECGVCGKA  239 (259)
T ss_pred             ceeehhchhhcc---chhhhhcchhHHHHHHHHHhccCCcceecchh
Confidence            358999999994   47778899999999998888889999999653

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=96.30  E-value=0.0024  Score=64.79  Aligned_cols=53  Identities=26%  Similarity=0.722  Sum_probs=41.5

Q ss_pred             CcccccccccccccCCccEEeCCCCccChhhHHHHHhc-----CCCCCCcccccCCCCcch
Q 021283          230 HDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDE-----HNSCPICRHELQTDDHAY  285 (314)
Q Consensus       230 ~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~-----~~tCPvCR~~l~~~d~~~  285 (314)
                      ...+|-+|.+.-   +..+...|+|.||+.||..+...     +-+||+|--.+..+....
T Consensus       535 ~~~~C~lc~d~a---ed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~  592 (791)
T KOG1002|consen  535 GEVECGLCHDPA---EDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEP  592 (791)
T ss_pred             CceeecccCChh---hhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccch
Confidence            467999999875   44666789999999999888662     348999988887665443

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.22  E-value=0.0031  Score=61.25  Aligned_cols=46  Identities=24%  Similarity=0.617  Sum_probs=33.3

Q ss_pred             cCCcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccC
Q 021283          228 LGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQ  279 (314)
Q Consensus       228 ~~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~  279 (314)
                      ......|.||++...   ..+-+||||+-|  |..-- +.-.+||+||..|.
T Consensus       302 ~~~p~lcVVcl~e~~---~~~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~  347 (355)
T KOG1571|consen  302 LPQPDLCVVCLDEPK---SAVFVPCGHVCC--CTLCS-KHLPQCPVCRQRIR  347 (355)
T ss_pred             cCCCCceEEecCCcc---ceeeecCCcEEE--chHHH-hhCCCCchhHHHHH
Confidence            344678999999974   478899999977  54332 22345999998774

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=96.13  E-value=0.0035  Score=43.83  Aligned_cols=40  Identities=33%  Similarity=0.839  Sum_probs=27.6

Q ss_pred             ccccccccccCCccEEeCCC-----CccChhhHHHHHh--cCCCCCCc
Q 021283          234 CAICKENLLVGDKMQELPCK-----HTFHPPCLKPWLD--EHNSCPIC  274 (314)
Q Consensus       234 C~ICLe~~~~~~~v~~LPCg-----H~FH~~CI~~WL~--~~~tCPvC  274 (314)
                      |-||++.-.... ..+.||+     ...|..|+..|+.  ...+|++|
T Consensus         1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C   47 (47)
T PF12906_consen    1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC   47 (47)
T ss_dssp             ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred             CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence            789999875544 5677865     3789999999998  44579987

>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.10  E-value=0.011  Score=54.42  Aligned_cols=62  Identities=27%  Similarity=0.567  Sum_probs=46.7

Q ss_pred             cccccccccccccCCccEEeCCCCccChhhHHHHHhc--------CCCCCCcccccCCCCcchhhHHHHHH
Q 021283          231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDE--------HNSCPICRHELQTDDHAYESWKEREK  293 (314)
Q Consensus       231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~--------~~tCPvCR~~l~~~d~~~~~~~~r~~  293 (314)
                      +..|..|--.+..++ .++|-|-|+||-.|++.|-..        .-.||.|-.+|.+.-...-...+.-+
T Consensus        50 ~pNC~LC~t~La~gd-t~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~NlvsPva~aLr  119 (299)
T KOG3970|consen   50 NPNCRLCNTPLASGD-TTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPINLVSPVAEALR  119 (299)
T ss_pred             CCCCceeCCccccCc-ceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCccccchhHHHHH
Confidence            568999999998777 466779999999999999653        22699999999766554444444333

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=96.08  E-value=0.0041  Score=43.85  Aligned_cols=44  Identities=32%  Similarity=0.687  Sum_probs=22.5

Q ss_pred             ccccccccccCCccEEeC--CCCccChhhHHHHHh-cCCCCCCccccc
Q 021283          234 CAICKENLLVGDKMQELP--CKHTFHPPCLKPWLD-EHNSCPICRHEL  278 (314)
Q Consensus       234 C~ICLe~~~~~~~v~~LP--CgH~FH~~CI~~WL~-~~~tCPvCR~~l  278 (314)
                      ||+|.+.+...+ ....|  |++.+|..|...-+. ..+.||-||.+.
T Consensus         1 cp~C~e~~d~~d-~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETD-KDFYPCECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCC-TT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCC-CccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            899999994322 33444  899999999988886 578999999864

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=96.07  E-value=0.0021  Score=51.22  Aligned_cols=33  Identities=27%  Similarity=0.700  Sum_probs=28.1

Q ss_pred             CCcccccccccccccCCccEEeCCCCccChhhHH
Q 021283          229 GHDAECAICKENLLVGDKMQELPCKHTFHPPCLK  262 (314)
Q Consensus       229 ~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~  262 (314)
                      .++..|+||-..+.. ......||||+||..|+.
T Consensus        76 ~~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~  108 (109)
T PF10367_consen   76 TESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK  108 (109)
T ss_pred             CCCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence            456789999999965 668889999999999975

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=95.99  E-value=0.0037  Score=45.15  Aligned_cols=48  Identities=31%  Similarity=0.723  Sum_probs=35.5

Q ss_pred             cccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCCCc
Q 021283          231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDH  283 (314)
Q Consensus       231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d~  283 (314)
                      ...|-.|...   +.+-+.+||+|+.+..|..-  .+.+-||+|-.++...++
T Consensus         7 ~~~~~~~~~~---~~~~~~~pCgH~I~~~~f~~--~rYngCPfC~~~~~~~~~   54 (55)
T PF14447_consen    7 EQPCVFCGFV---GTKGTVLPCGHLICDNCFPG--ERYNGCPFCGTPFEFDDP   54 (55)
T ss_pred             ceeEEEcccc---ccccccccccceeeccccCh--hhccCCCCCCCcccCCCC
Confidence            3455555544   34567799999999999765  477889999999876653

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.97  E-value=0.0022  Score=60.79  Aligned_cols=44  Identities=20%  Similarity=0.529  Sum_probs=38.7

Q ss_pred             ccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCccccc
Q 021283          232 AECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHEL  278 (314)
Q Consensus       232 ~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l  278 (314)
                      +.|-||...|.   .++...|+|.||..|...-+.....|++|-...
T Consensus       242 f~c~icr~~f~---~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t  285 (313)
T KOG1813|consen  242 FKCFICRKYFY---RPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQT  285 (313)
T ss_pred             ccccccccccc---cchhhcCCceeehhhhccccccCCcceeccccc
Confidence            46999999994   477788999999999999899989999997765

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.96  E-value=0.0038  Score=61.64  Aligned_cols=47  Identities=30%  Similarity=0.597  Sum_probs=38.1

Q ss_pred             CcccccccccccccCCccEEeCCCCccChhhHHHHHhc--------CCCCCCccc
Q 021283          230 HDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDE--------HNSCPICRH  276 (314)
Q Consensus       230 ~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~--------~~tCPvCR~  276 (314)
                      .-..|.||++..........+||+|+||+.|+..++..        .-.||-|..
T Consensus       183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C  237 (445)
T KOG1814|consen  183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC  237 (445)
T ss_pred             hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence            46899999999865567889999999999999999872        225877654

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=95.81  E-value=0.0073  Score=58.43  Aligned_cols=54  Identities=22%  Similarity=0.575  Sum_probs=38.6

Q ss_pred             CCcccccccccccccCCc-cEEeCCCCccChhhHHHHHh-cCCCCCCcccccCCCC
Q 021283          229 GHDAECAICKENLLVGDK-MQELPCKHTFHPPCLKPWLD-EHNSCPICRHELQTDD  282 (314)
Q Consensus       229 ~~~~~C~ICLe~~~~~~~-v~~LPCgH~FH~~CI~~WL~-~~~tCPvCR~~l~~~d  282 (314)
                      +++.-||.|++.+...++ -.-.|||-..|.-|....-. .++.||.||.....++
T Consensus        12 deed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den   67 (480)
T COG5175          12 DEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN   67 (480)
T ss_pred             cccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence            345569999999977654 44567998888888655322 4678999998665444

>PHA02862 5L protein; Provisional

Probab=95.77  E-value=0.0054  Score=52.68  Aligned_cols=45  Identities=20%  Similarity=0.674  Sum_probs=34.4

Q ss_pred             cccccccccccccCCccEEeCCC-----CccChhhHHHHHhc--CCCCCCcccccC
Q 021283          231 DAECAICKENLLVGDKMQELPCK-----HTFHPPCLKPWLDE--HNSCPICRHELQ  279 (314)
Q Consensus       231 ~~~C~ICLe~~~~~~~v~~LPCg-----H~FH~~CI~~WL~~--~~tCPvCR~~l~  279 (314)
                      +..|-||++.-.  +.  .-||+     ...|..|+..|+..  +.+||+|+.+..
T Consensus         2 ~diCWIC~~~~~--e~--~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~   53 (156)
T PHA02862          2 SDICWICNDVCD--ER--NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN   53 (156)
T ss_pred             CCEEEEecCcCC--CC--cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence            358999999853  22  35664     57999999999984  448999998775

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.74  E-value=0.0085  Score=55.72  Aligned_cols=54  Identities=17%  Similarity=0.343  Sum_probs=45.6

Q ss_pred             CcccccccccccccCCccEEe-CCCCccChhhHHHHHhcCCCCCCcccccCCCCc
Q 021283          230 HDAECAICKENLLVGDKMQEL-PCKHTFHPPCLKPWLDEHNSCPICRHELQTDDH  283 (314)
Q Consensus       230 ~~~~C~ICLe~~~~~~~v~~L-PCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d~  283 (314)
                      .-+-||||.+.+...-.+..| ||||+|+..|+.+.++....||+|-.++..+|.
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdi  274 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDI  274 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccce
Confidence            457899999999776655555 599999999999999999999999988876653

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=95.73  E-value=0.017  Score=55.73  Aligned_cols=48  Identities=15%  Similarity=0.306  Sum_probs=37.3

Q ss_pred             CCcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCccccc
Q 021283          229 GHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHEL  278 (314)
Q Consensus       229 ~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l  278 (314)
                      .+...||||+.....  +.+..--|-+||..||..++..++.||+--.+.
T Consensus       298 ~~~~~CpvClk~r~N--ptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~  345 (357)
T KOG0826|consen  298 PDREVCPVCLKKRQN--PTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA  345 (357)
T ss_pred             CccccChhHHhccCC--CceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence            346789999998643  223333699999999999999999999976554

>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]

Probab=95.63  E-value=0.0052  Score=65.33  Aligned_cols=50  Identities=30%  Similarity=0.730  Sum_probs=37.5

Q ss_pred             CCcccccccccccccCCccEEeC-CCCccChhhHHHHHhcCC-------CCCCccccc
Q 021283          229 GHDAECAICKENLLVGDKMQELP-CKHTFHPPCLKPWLDEHN-------SCPICRHEL  278 (314)
Q Consensus       229 ~~~~~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~WL~~~~-------tCPvCR~~l  278 (314)
                      ....+|.||++.+.....+-... |-|+||..||..|-+...       .||.|+...
T Consensus       189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~  246 (950)
T KOG1952|consen  189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS  246 (950)
T ss_pred             cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence            34679999999987655544433 889999999999977421       599998543

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.42  E-value=0.005  Score=56.90  Aligned_cols=46  Identities=28%  Similarity=0.686  Sum_probs=34.9

Q ss_pred             cccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCC
Q 021283          233 ECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTD  281 (314)
Q Consensus       233 ~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~  281 (314)
                      .|-.|...-. ++....+.|+|+||..|...-  ....||+|+.+|...
T Consensus         5 hCn~C~~~~~-~~~f~LTaC~HvfC~~C~k~~--~~~~C~lCkk~ir~i   50 (233)
T KOG4739|consen    5 HCNKCFRFPS-QDPFFLTACRHVFCEPCLKAS--SPDVCPLCKKSIRII   50 (233)
T ss_pred             EeccccccCC-CCceeeeechhhhhhhhcccC--Cccccccccceeeee
Confidence            5777877664 677788889999999997653  233899999887543

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.41  E-value=0.0032  Score=59.73  Aligned_cols=42  Identities=36%  Similarity=0.676  Sum_probs=33.4

Q ss_pred             cccccccccccccCCccEEeCCCCc-cChhhHHHHHhcCCCCCCcccccC
Q 021283          231 DAECAICKENLLVGDKMQELPCKHT-FHPPCLKPWLDEHNSCPICRHELQ  279 (314)
Q Consensus       231 ~~~C~ICLe~~~~~~~v~~LPCgH~-FH~~CI~~WL~~~~tCPvCR~~l~  279 (314)
                      ...|.||++..   ...+.|+|||. -|..|-...    +.||+||..|.
T Consensus       300 ~~LC~ICmDaP---~DCvfLeCGHmVtCt~CGkrm----~eCPICRqyi~  342 (350)
T KOG4275|consen  300 RRLCAICMDAP---RDCVFLECGHMVTCTKCGKRM----NECPICRQYIV  342 (350)
T ss_pred             HHHHHHHhcCC---cceEEeecCcEEeehhhcccc----ccCchHHHHHH
Confidence            56899999985   56899999996 577786553    48999998763

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.37  E-value=0.013  Score=55.40  Aligned_cols=48  Identities=33%  Similarity=0.659  Sum_probs=39.6

Q ss_pred             cccccccccccccCC---ccEEeCCCCccChhhHHHHHhc-CCCCCCccccc
Q 021283          231 DAECAICKENLLVGD---KMQELPCKHTFHPPCLKPWLDE-HNSCPICRHEL  278 (314)
Q Consensus       231 ~~~C~ICLe~~~~~~---~v~~LPCgH~FH~~CI~~WL~~-~~tCPvCR~~l  278 (314)
                      ...|-||-++|..++   .++.|.|||.||..|+.+.+.. ...||.||.+.
T Consensus         3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~   54 (296)
T KOG4185|consen    3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT   54 (296)
T ss_pred             CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence            358999999998653   3777889999999999998764 34799999985

>PHA03096 p28-like protein; Provisional

Probab=95.32  E-value=0.0077  Score=57.43  Aligned_cols=47  Identities=28%  Similarity=0.489  Sum_probs=33.6

Q ss_pred             ccccccccccccC----CccEEeC-CCCccChhhHHHHHhcC---C---CCCCccccc
Q 021283          232 AECAICKENLLVG----DKMQELP-CKHTFHPPCLKPWLDEH---N---SCPICRHEL  278 (314)
Q Consensus       232 ~~C~ICLe~~~~~----~~v~~LP-CgH~FH~~CI~~WL~~~---~---tCPvCR~~l  278 (314)
                      ..|.||++.....    ..-..|+ |.|.||..||..|-...   .   .||.|+..+
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~~~~~  236 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRLNTVI  236 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccchhhHH
Confidence            6899999987542    2345577 99999999999997632   2   455555544

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.23  E-value=0.01  Score=57.68  Aligned_cols=56  Identities=25%  Similarity=0.581  Sum_probs=42.1

Q ss_pred             CCcccccccccccccCCccEEeCCCCccChhhHHHH--HhcCCCCCCcccc----cCCCCcchhh
Q 021283          229 GHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPW--LDEHNSCPICRHE----LQTDDHAYES  287 (314)
Q Consensus       229 ~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~W--L~~~~tCPvCR~~----l~~~d~~~~~  287 (314)
                      .+...|-||-+.+   .....+||+|..|.-|....  |-....||+||+.    +.+++++.+.
T Consensus        59 Een~~C~ICA~~~---TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V~fT~~~~~DI  120 (493)
T COG5236          59 EENMNCQICAGST---TYSARYPCGHQICHACAVRLRALYMQKGCPLCRTETEAVVFTASSPADI  120 (493)
T ss_pred             cccceeEEecCCc---eEEEeccCCchHHHHHHHHHHHHHhccCCCccccccceEEEecCCCCcc
Confidence            3456899999987   56788999999999997553  4567789999974    3455555443

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=94.74  E-value=0.025  Score=49.43  Aligned_cols=47  Identities=30%  Similarity=0.685  Sum_probs=34.7

Q ss_pred             CcccccccccccccCCccEEeCCC--C---ccChhhHHHHHhcC--CCCCCcccccCC
Q 021283          230 HDAECAICKENLLVGDKMQELPCK--H---TFHPPCLKPWLDEH--NSCPICRHELQT  280 (314)
Q Consensus       230 ~~~~C~ICLe~~~~~~~v~~LPCg--H---~FH~~CI~~WL~~~--~tCPvCR~~l~~  280 (314)
                      .+..|-||.+...  .  ...||.  .   ..|.+|+..|+..+  ..|++|+++...
T Consensus         7 ~~~~CRIC~~~~~--~--~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i   60 (162)
T PHA02825          7 MDKCCWICKDEYD--V--VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI   60 (162)
T ss_pred             CCCeeEecCCCCC--C--ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence            4679999998842  2  235754  3   56999999999854  489999987643

>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.24  E-value=0.027  Score=60.41  Aligned_cols=38  Identities=32%  Similarity=0.677  Sum_probs=30.7

Q ss_pred             cCCcccccccccccccCCccEEeCCCCccChhhHHHHHh
Q 021283          228 LGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLD  266 (314)
Q Consensus       228 ~~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~  266 (314)
                      ......|.||...+.. .+-...||||.||..||.....
T Consensus       814 ~ep~d~C~~C~~~ll~-~pF~vf~CgH~FH~~Cl~~~v~  851 (911)
T KOG2034|consen  814 LEPQDSCDHCGRPLLI-KPFYVFPCGHCFHRDCLIRHVL  851 (911)
T ss_pred             ecCccchHHhcchhhc-CcceeeeccchHHHHHHHHHHH
Confidence            3457899999998865 4677889999999999977643

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.17  E-value=0.038  Score=54.49  Aligned_cols=50  Identities=22%  Similarity=0.328  Sum_probs=41.7

Q ss_pred             cCCcccccccccccccCCccEEeCCCCccChhhHHHHHhcC---CCCCCcccc
Q 021283          228 LGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEH---NSCPICRHE  277 (314)
Q Consensus       228 ~~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~---~tCPvCR~~  277 (314)
                      ....+.|||=.+.-....+++.|.|||+..+.-+.+..+..   ..||+|-..
T Consensus       331 fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e  383 (394)
T KOG2817|consen  331 FHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE  383 (394)
T ss_pred             ccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence            45678999998888888899999999999999999976643   369999543

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.03  E-value=0.029  Score=59.95  Aligned_cols=44  Identities=32%  Similarity=0.807  Sum_probs=35.5

Q ss_pred             cccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccC
Q 021283          231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQ  279 (314)
Q Consensus       231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~  279 (314)
                      ...|.+|--.+.  -+.+..-|||.||..|+.   .....||.|+.++.
T Consensus       840 ~skCs~C~~~Ld--lP~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~~  883 (933)
T KOG2114|consen  840 VSKCSACEGTLD--LPFVHFLCGHSYHQHCLE---DKEDKCPKCLPELR  883 (933)
T ss_pred             eeeecccCCccc--cceeeeecccHHHHHhhc---cCcccCCccchhhh
Confidence            468999988874  357778899999999998   45668999998543

>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.01  E-value=0.029  Score=49.96  Aligned_cols=50  Identities=30%  Similarity=0.781  Sum_probs=35.5

Q ss_pred             cccccccccccccC----CccEEeCCCCccChhhHHHHHhc-----C------CCCCCcccccCC
Q 021283          231 DAECAICKENLLVG----DKMQELPCKHTFHPPCLKPWLDE-----H------NSCPICRHELQT  280 (314)
Q Consensus       231 ~~~C~ICLe~~~~~----~~v~~LPCgH~FH~~CI~~WL~~-----~------~tCPvCR~~l~~  280 (314)
                      ...|-||...-..|    ...-...||..||.-|+..||+.     +      +.||+|-.++.-
T Consensus       165 ~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial  229 (234)
T KOG3268|consen  165 LGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL  229 (234)
T ss_pred             hhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence            45788887553332    23444569999999999999983     1      259999888753

>KOG1940 consensus Zn-finger protein [General function prediction only]

Probab=93.95  E-value=0.031  Score=53.08  Aligned_cols=61  Identities=31%  Similarity=0.624  Sum_probs=45.0

Q ss_pred             cccccccccccccCC-ccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCCCcchhhHHHHHH
Q 021283          231 DAECAICKENLLVGD-KMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYESWKEREK  293 (314)
Q Consensus       231 ~~~C~ICLe~~~~~~-~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d~~~~~~~~r~~  293 (314)
                      ...||||.+.+.... .+..++|||..|..|.......+-+||+|..  +.+-..+-...+++-
T Consensus       158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~--~~d~~~~~~~~d~~l  219 (276)
T KOG1940|consen  158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK--PGDMSHYFRKLDKEL  219 (276)
T ss_pred             cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc--hHHHHHHHHHHHHHH
Confidence            446999999876543 4778899999999999998777789999987  344444444444443

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=93.94  E-value=0.022  Score=60.38  Aligned_cols=44  Identities=36%  Similarity=0.819  Sum_probs=36.9

Q ss_pred             ccccccccccccCCccEEeCCCCccChhhHHHHHhc--CCCCCCcccccC
Q 021283          232 AECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDE--HNSCPICRHELQ  279 (314)
Q Consensus       232 ~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~--~~tCPvCR~~l~  279 (314)
                      ..|.||++ .   +.++..+|+|.||..|+..-+..  ...||+||..+.
T Consensus       455 ~~c~ic~~-~---~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~  500 (674)
T KOG1001|consen  455 HWCHICCD-L---DSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLK  500 (674)
T ss_pred             cccccccc-c---ccceeecccchHHHHHHHhccccccCCCCcHHHHHHH
Confidence            79999999 2   67888999999999999988764  236999998764

>PF04641 Rtf2: Rtf2 RING-finger

Probab=93.84  E-value=0.059  Score=50.57  Aligned_cols=52  Identities=19%  Similarity=0.448  Sum_probs=39.9

Q ss_pred             CCcccccccccccccCCc-cEEeCCCCccChhhHHHHHhcCCCCCCcccccCCC
Q 021283          229 GHDAECAICKENLLVGDK-MQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTD  281 (314)
Q Consensus       229 ~~~~~C~ICLe~~~~~~~-v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~  281 (314)
                      ...+.|||+...|..... +...||||+|...||... .....||+|-.++...
T Consensus       111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~~  163 (260)
T PF04641_consen  111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTEE  163 (260)
T ss_pred             CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccccC
Confidence            446789999999954444 555589999999999996 3456899998886533

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.75  E-value=0.0052  Score=60.29  Aligned_cols=50  Identities=34%  Similarity=0.659  Sum_probs=43.1

Q ss_pred             cccccccccccccC-CccEEeCCCCccChhhHHHHHhcCCCCCCcccccCC
Q 021283          231 DAECAICKENLLVG-DKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQT  280 (314)
Q Consensus       231 ~~~C~ICLe~~~~~-~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~  280 (314)
                      ...|+||.+.++.. +++-.+-|||.+|..||.+||.....||.|+..|+.
T Consensus       196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~  246 (465)
T KOG0827|consen  196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPK  246 (465)
T ss_pred             HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhh
Confidence            45899999998765 456667799999999999999999999999998864

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=93.59  E-value=0.066  Score=46.77  Aligned_cols=33  Identities=30%  Similarity=0.650  Sum_probs=21.3

Q ss_pred             cccccccccccccCCccEEeC------------CCCc-cChhhHHHHHh
Q 021283          231 DAECAICKENLLVGDKMQELP------------CKHT-FHPPCLKPWLD  266 (314)
Q Consensus       231 ~~~C~ICLe~~~~~~~v~~LP------------CgH~-FH~~CI~~WL~  266 (314)
                      +..|||||+.-   -..+.|-            |+.. -|..|++++-+
T Consensus         2 d~~CpICme~P---HNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk   47 (162)
T PF07800_consen    2 DVTCPICMEHP---HNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK   47 (162)
T ss_pred             CccCceeccCC---CceEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence            57899999974   2233332            4432 47789998743

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=93.51  E-value=0.035  Score=38.09  Aligned_cols=41  Identities=29%  Similarity=0.822  Sum_probs=23.3

Q ss_pred             ccccccccccCCccEEeCCCCccChhhHHHHHhcCC--CCCCc
Q 021283          234 CAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHN--SCPIC  274 (314)
Q Consensus       234 C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~--tCPvC  274 (314)
                      |.+|.+....|.....-.|+=.+|..|+..+++...  .||.|
T Consensus         1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C   43 (43)
T PF08746_consen    1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC   43 (43)
T ss_dssp             -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred             CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence            677887775554433334888999999999998655  79988

; PDB: 3NW0_A 2CT0_A.

>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.92  E-value=0.23  Score=45.31  Aligned_cols=41  Identities=32%  Similarity=0.720  Sum_probs=31.1

Q ss_pred             ccccccccccCCccEEeCCCCc-cChhhHHHHHhcCCCCCCcccccCCC
Q 021283          234 CAICKENLLVGDKMQELPCKHT-FHPPCLKPWLDEHNSCPICRHELQTD  281 (314)
Q Consensus       234 C~ICLe~~~~~~~v~~LPCgH~-FH~~CI~~WL~~~~tCPvCR~~l~~~  281 (314)
                      |-+|.+.=   -.+..+||.|+ +|..|-..    -..||+|+.+....
T Consensus       161 Cr~C~~~~---~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~s~  202 (207)
T KOG1100|consen  161 CRKCGERE---ATVLLLPCRHLCLCGICDES----LRICPICRSPKTSS  202 (207)
T ss_pred             ceecCcCC---ceEEeecccceEeccccccc----CccCCCCcChhhce
Confidence            88888873   45889999985 88889654    34699999876543

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]

Probab=91.91  E-value=0.066  Score=59.53  Aligned_cols=58  Identities=24%  Similarity=0.419  Sum_probs=45.9

Q ss_pred             CCcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCCCcchhhH
Q 021283          229 GHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYESW  288 (314)
Q Consensus       229 ~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d~~~~~~  288 (314)
                      .....|.||++.+.  ....+..|||.+|..|+..|+..+..||+|+....+...+.+..
T Consensus      1151 ~~~~~c~ic~dil~--~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi~~dfg~kI~~v 1208 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILR--NQGGIAGCGHEPCCRCDELWLYASSRCPICKSIKGDFGTKIDSV 1208 (1394)
T ss_pred             hcccchHHHHHHHH--hcCCeeeechhHhhhHHHHHHHHhccCcchhhhhhhhccCchhH
Confidence            44569999999984  23456679999999999999999999999997665555555544

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=91.61  E-value=0.17  Score=36.58  Aligned_cols=33  Identities=24%  Similarity=0.744  Sum_probs=29.1

Q ss_pred             cccccccccccccCCccEEeC-CCCccChhhHHH
Q 021283          231 DAECAICKENLLVGDKMQELP-CKHTFHPPCLKP  263 (314)
Q Consensus       231 ~~~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~  263 (314)
                      ...|++|-+.|..++.+++-| |+-.+|+.|...
T Consensus         5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~   38 (54)
T PF14446_consen    5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK   38 (54)
T ss_pred             CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence            458999999998888889998 999999999654

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=91.19  E-value=0.15  Score=49.06  Aligned_cols=43  Identities=26%  Similarity=0.597  Sum_probs=34.1

Q ss_pred             CcccccccccccccCCccEEeCC--CCccChhhHHHHHhcCCCCCCcccccC
Q 021283          230 HDAECAICKENLLVGDKMQELPC--KHTFHPPCLKPWLDEHNSCPICRHELQ  279 (314)
Q Consensus       230 ~~~~C~ICLe~~~~~~~v~~LPC--gH~FH~~CI~~WL~~~~tCPvCR~~l~  279 (314)
                      +-.+||||.+.+..    -++.|  ||+-|..|-.+   ....||.||.++.
T Consensus        47 ~lleCPvC~~~l~~----Pi~QC~nGHlaCssC~~~---~~~~CP~Cr~~~g   91 (299)
T KOG3002|consen   47 DLLDCPVCFNPLSP----PIFQCDNGHLACSSCRTK---VSNKCPTCRLPIG   91 (299)
T ss_pred             hhccCchhhccCcc----cceecCCCcEehhhhhhh---hcccCCccccccc
Confidence            46799999999853    23446  79999999764   5678999999997

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.45  E-value=0.082  Score=49.33  Aligned_cols=72  Identities=18%  Similarity=0.236  Sum_probs=43.6

Q ss_pred             cccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCCCcchhhHHHHHHHHHHHHhhhccccCCCc
Q 021283          231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYESWKEREKEAQEERKGAANAVRGGE  310 (314)
Q Consensus       231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d~~~~~~~~r~~~~~~e~~~~~~~~~~~~  310 (314)
                      -..|+.||..+   ..+++.|=||+|++.||..++--+.      ..+...-..|+..+++++-+++++.---.+.|..|
T Consensus        43 FdcCsLtLqPc---~dPvit~~GylfdrEaILe~ilaqK------ke~arrlkayekqrr~eed~e~qra~~q~~~~~~e  113 (303)
T KOG3039|consen   43 FDCCSLTLQPC---RDPVITPDGYLFDREAILEYILAQK------KEIARRLKAYEKQRRAEEDKEEQRAMSQKARRLDE  113 (303)
T ss_pred             cceeeeecccc---cCCccCCCCeeeeHHHHHHHHHHHH------HHHHHHHHHHHHHHHhhhhHHHHHHHhhhHHHHHH
Confidence            45799999998   5588899999999999999764222      22333333444444333323333332345566656


Q ss_pred             c
Q 021283          311 Y  311 (314)
Q Consensus       311 ~  311 (314)
                      |
T Consensus       114 F  114 (303)
T KOG3039|consen  114 F  114 (303)
T ss_pred             H
Confidence            6

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=90.01  E-value=0.18  Score=53.55  Aligned_cols=41  Identities=29%  Similarity=0.685  Sum_probs=31.3

Q ss_pred             ccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCC
Q 021283          232 AECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPI  273 (314)
Q Consensus       232 ~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPv  273 (314)
                      ..|.||.-.+ .+...+...|+|+.|..|...|++....||-
T Consensus      1029 ~~C~~C~l~V-~gss~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1029 FQCAICHLAV-RGSSNFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred             eeeeeEeeEe-eccchhhccccccccHHHHHHHHhcCCcCCC
Confidence            4566665554 2344555679999999999999999999984

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=89.92  E-value=0.16  Score=49.97  Aligned_cols=31  Identities=26%  Similarity=0.803  Sum_probs=24.1

Q ss_pred             CCCccChhhHHHHHhc-------------CCCCCCcccccCCCC
Q 021283          252 CKHTFHPPCLKPWLDE-------------HNSCPICRHELQTDD  282 (314)
Q Consensus       252 CgH~FH~~CI~~WL~~-------------~~tCPvCR~~l~~~d  282 (314)
                      |.-++|.+|+-+|+..             +.+||+||+.+.--|
T Consensus       311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilD  354 (358)
T PF10272_consen  311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILD  354 (358)
T ss_pred             ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeee
Confidence            5677889999998763             337999999987655

They are purported to be transmembrane protein-precursors but their function is unknown.

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=89.48  E-value=0.14  Score=49.18  Aligned_cols=44  Identities=27%  Similarity=0.663  Sum_probs=30.9

Q ss_pred             cccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCccccc
Q 021283          231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHEL  278 (314)
Q Consensus       231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l  278 (314)
                      .-.|.-|--.+.  -.-+..||.|+||.+|...  .....||.|-.+|
T Consensus        90 VHfCd~Cd~PI~--IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~V  133 (389)
T KOG2932|consen   90 VHFCDRCDFPIA--IYGRMIPCKHVFCLECARS--DSDKICPLCDDRV  133 (389)
T ss_pred             eEeecccCCcce--eeecccccchhhhhhhhhc--CccccCcCcccHH
Confidence            446766755543  3456689999999999765  3456899996555

>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=88.98  E-value=0.49  Score=45.15  Aligned_cols=49  Identities=27%  Similarity=0.570  Sum_probs=35.1

Q ss_pred             ccccccccc-ccCC-ccEEeCCCCccChhhHHHHHhc-CCCCCCcccccCCC
Q 021283          233 ECAICKENL-LVGD-KMQELPCKHTFHPPCLKPWLDE-HNSCPICRHELQTD  281 (314)
Q Consensus       233 ~C~ICLe~~-~~~~-~v~~LPCgH~FH~~CI~~WL~~-~~tCPvCR~~l~~~  281 (314)
                      .||+|.... ...+ ...+-||+|..|.+|++..+.. ...||.|-..+...
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~   53 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKN   53 (300)
T ss_pred             CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhc
Confidence            599997542 2222 3344479999999999998874 56899997766543

>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=88.22  E-value=0.18  Score=35.52  Aligned_cols=33  Identities=33%  Similarity=0.728  Sum_probs=23.4

Q ss_pred             EeCCC-CccChhhHHHHHhcCCCCCCcccccCCC
Q 021283          249 ELPCK-HTFHPPCLKPWLDEHNSCPICRHELQTD  281 (314)
Q Consensus       249 ~LPCg-H~FH~~CI~~WL~~~~tCPvCR~~l~~~  281 (314)
                      ...|. |..|..|+.--|..+..||+|..++++.
T Consensus        15 Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk   48 (50)
T PF03854_consen   15 LIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTK   48 (50)
T ss_dssp             EEE-SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred             eeeecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence            34575 9999999999999999999999999864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.

>KOG3899 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.17  E-value=0.2  Score=47.89  Aligned_cols=34  Identities=24%  Similarity=0.590  Sum_probs=26.6

Q ss_pred             CCCccChhhHHHHHh-------------cCCCCCCcccccCCCCcch
Q 021283          252 CKHTFHPPCLKPWLD-------------EHNSCPICRHELQTDDHAY  285 (314)
Q Consensus       252 CgH~FH~~CI~~WL~-------------~~~tCPvCR~~l~~~d~~~  285 (314)
                      |.-++|.+|+-+|+.             ++.+||+||..+...|-.|
T Consensus       325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv~~  371 (381)
T KOG3899|consen  325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDVHC  371 (381)
T ss_pred             cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeeeeE
Confidence            677899999998865             3448999999987666544

>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]

Probab=87.60  E-value=0.14  Score=54.01  Aligned_cols=47  Identities=28%  Similarity=0.709  Sum_probs=37.4

Q ss_pred             CcccccccccccccCCccEEeCCCCccChhhHHHHHhc---CCCCCCcccccC
Q 021283          230 HDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDE---HNSCPICRHELQ  279 (314)
Q Consensus       230 ~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~---~~tCPvCR~~l~  279 (314)
                      ...+|+||+..+...   ..+.|.|.|+..|+..-|..   ...||+|+..+.
T Consensus        20 k~lEc~ic~~~~~~p---~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e   69 (684)
T KOG4362|consen   20 KILECPICLEHVKEP---SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIE   69 (684)
T ss_pred             hhccCCceeEEeecc---chhhhhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence            467999999998653   66789999999998876654   347999987664

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=87.49  E-value=0.4  Score=40.84  Aligned_cols=51  Identities=24%  Similarity=0.523  Sum_probs=37.4

Q ss_pred             CcccccccccccccCCccEEeC---CCCccChhhHHHHHh---cCCCCCCcccccCCCC
Q 021283          230 HDAECAICKENLLVGDKMQELP---CKHTFHPPCLKPWLD---EHNSCPICRHELQTDD  282 (314)
Q Consensus       230 ~~~~C~ICLe~~~~~~~v~~LP---CgH~FH~~CI~~WL~---~~~tCPvCR~~l~~~d  282 (314)
                      ...+|.||.|.-.+  .-..-|   ||-..|..|--..++   .++.||+|++.+.+..
T Consensus        79 ~lYeCnIC~etS~e--e~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~  135 (140)
T PF05290_consen   79 KLYECNICKETSAE--ERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS  135 (140)
T ss_pred             CceeccCcccccch--hhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence            36799999998543  222233   899999998766544   5779999999987654

>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=87.39  E-value=0.2  Score=47.28  Aligned_cols=51  Identities=25%  Similarity=0.623  Sum_probs=38.2

Q ss_pred             cccccccccccccCCc-cEEeCCC-----CccChhhHHHHHh--cCCCCCCcccccCCC
Q 021283          231 DAECAICKENLLVGDK-MQELPCK-----HTFHPPCLKPWLD--EHNSCPICRHELQTD  281 (314)
Q Consensus       231 ~~~C~ICLe~~~~~~~-v~~LPCg-----H~FH~~CI~~WL~--~~~tCPvCR~~l~~~  281 (314)
                      ...|-||......... ....||.     +..|..|+..|+.  ....|.+|.......
T Consensus        78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~  136 (323)
T KOG1609|consen   78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV  136 (323)
T ss_pred             CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence            4689999997654321 5667765     6689999999998  556899998866544

>KOG3053 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.59  E-value=0.26  Score=46.23  Aligned_cols=49  Identities=33%  Similarity=0.688  Sum_probs=34.6

Q ss_pred             CcccccccccccccCCcc-EEeCCC-----CccChhhHHHHHhcCC--------CCCCccccc
Q 021283          230 HDAECAICKENLLVGDKM-QELPCK-----HTFHPPCLKPWLDEHN--------SCPICRHEL  278 (314)
Q Consensus       230 ~~~~C~ICLe~~~~~~~v-~~LPCg-----H~FH~~CI~~WL~~~~--------tCPvCR~~l  278 (314)
                      .+.-|=||+..=+++... -.-||.     |..|..|+..|+..+.        +||-|+++.
T Consensus        19 ~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY   81 (293)
T KOG3053|consen   19 LERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY   81 (293)
T ss_pred             cceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence            356899999885433221 234553     8899999999997432        699999865

>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=86.36  E-value=0.28  Score=48.79  Aligned_cols=37  Identities=30%  Similarity=0.594  Sum_probs=27.2

Q ss_pred             cccccccccccccC-CccEEeCCCCccChhhHHHHHhc
Q 021283          231 DAECAICKENLLVG-DKMQELPCKHTFHPPCLKPWLDE  267 (314)
Q Consensus       231 ~~~C~ICLe~~~~~-~~v~~LPCgH~FH~~CI~~WL~~  267 (314)
                      ..+|.||....... +......|+|.||..|+.+.+..
T Consensus       146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev  183 (384)
T KOG1812|consen  146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEV  183 (384)
T ss_pred             cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhh
Confidence            56999999444333 33334559999999999998873

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=85.92  E-value=0.27  Score=45.76  Aligned_cols=47  Identities=30%  Similarity=0.721  Sum_probs=34.4

Q ss_pred             Ccccccccccc-cccCC-ccEEeC-CCCccChhhHHHHHhc-CCCCC--Cccc
Q 021283          230 HDAECAICKEN-LLVGD-KMQELP-CKHTFHPPCLKPWLDE-HNSCP--ICRH  276 (314)
Q Consensus       230 ~~~~C~ICLe~-~~~~~-~v~~LP-CgH~FH~~CI~~WL~~-~~tCP--vCR~  276 (314)
                      .+..||||..+ |...+ +..+-| |-|.+|.+|++..+.. ...||  -|-.
T Consensus         9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k   61 (314)
T COG5220           9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK   61 (314)
T ss_pred             hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence            35689999765 33333 445557 9999999999999875 55899  6754

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=85.90  E-value=0.3  Score=51.07  Aligned_cols=43  Identities=28%  Similarity=0.577  Sum_probs=33.2

Q ss_pred             cccccccccccccCC-ccEEeCCCCccChhhHHHHHhcCCCCCCccc
Q 021283          231 DAECAICKENLLVGD-KMQELPCKHTFHPPCLKPWLDEHNSCPICRH  276 (314)
Q Consensus       231 ~~~C~ICLe~~~~~~-~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~  276 (314)
                      ...|+||++.|.... .++.+-|||..|..|+..-.  +.+|| |++
T Consensus        11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly--n~scp-~~~   54 (861)
T KOG3161|consen   11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY--NASCP-TKR   54 (861)
T ss_pred             HhhchHHHHHHHHHhcCcccccccchHHHHHHHhHh--hccCC-CCc
Confidence            468999999986543 47777899999999998754  45787 543

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=84.85  E-value=0.49  Score=47.52  Aligned_cols=35  Identities=23%  Similarity=0.600  Sum_probs=30.0

Q ss_pred             CcccccccccccccCCccEEeCCCCccChhhHHHHHhc
Q 021283          230 HDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDE  267 (314)
Q Consensus       230 ~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~  267 (314)
                      ++..|+||-.-|   +.+++|||+|..|..|...-+.+
T Consensus         3 eelkc~vc~~f~---~epiil~c~h~lc~~ca~~~~~~   37 (699)
T KOG4367|consen    3 EELKCPVCGSFY---REPIILPCSHNLCQACARNILVQ   37 (699)
T ss_pred             ccccCceehhhc---cCceEeecccHHHHHHHHhhccc
Confidence            467899999988   56899999999999999877654

>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=81.02  E-value=1.3  Score=42.89  Aligned_cols=48  Identities=21%  Similarity=0.324  Sum_probs=37.7

Q ss_pred             hcCCcccccccccccccCCccEEeCCCCccChhhHHHHHhc---CCCCCCc
Q 021283          227 KLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDE---HNSCPIC  274 (314)
Q Consensus       227 ~~~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~---~~tCPvC  274 (314)
                      .....+.|||=-+.-.....++.|.|||+.-..-++..-+.   ...||+|
T Consensus       332 hfHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYC  382 (396)
T COG5109         332 HFHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYC  382 (396)
T ss_pred             cccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCC
Confidence            34567899998777766678999999999999998885442   2369999

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.49  E-value=0.65  Score=49.66  Aligned_cols=54  Identities=28%  Similarity=0.460  Sum_probs=38.4

Q ss_pred             cccccccccccccC----CccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCCCcch
Q 021283          231 DAECAICKENLLVG----DKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAY  285 (314)
Q Consensus       231 ~~~C~ICLe~~~~~----~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d~~~  285 (314)
                      +..|.-|++.....    +.++.+-|+|+||+.|+..-.-++. |-.|-....+.+...
T Consensus       784 e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~~~~~~~~~~~i  841 (846)
T KOG2066|consen  784 EERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIESGKNRTPDSAI  841 (846)
T ss_pred             hhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChhhceecCcchHh
Confidence            56899999886532    4588889999999999877655444 777765554444333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	314
2ect_A	78	Solution Structure Of The Zinc Finger, C3hc4 Type (		7e-12
2l0b_A	91	Solution Nmr Structure Of Zinc Finger Domain Of E3		3e-11
1iym_A	55	Ring-H2 Finger Domain Of El5 Length = 55		2e-06
2kiz_A	69	Solution Structure Of Arkadia Ring-H2 Finger Domain		5e-06
2ep4_A	74	Solution Structure Of Ring Finger From Human Ring F		8e-06
2ecn_A	70	Solution Structure Of The Ring Domain Of The Human		2e-05
1x4j_A	75	Solution Structure Of Ring Finger In Ring Finger Pr		5e-04
4ayc_B	138	Rnf8 Ring Domain Structure Length = 138		7e-04

>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring Finger) Domain Of Ring Finger Protein 126 Length = 78

Iteration: 1
 Score = 67.8 bits (164), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 40/59 (67%)
Query: 226 DKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHA 284
           + +G   EC +CKE+  +G+ +++LPC H FH  C+ PWL++H+SCP+CR  L   + A
Sbjct: 10  EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTA 68

>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3 Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target Hr4710b Length = 91

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 205 PPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPW 264
           PPASKE +  LP I +TE+    +G +  C IC    + GD   ELPC H FH PC+  W
Sbjct: 15  PPASKESIDALPEILVTED-HGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIW 73
Query: 265 LDEHNSCPICR 275
           L +  +CP+CR
Sbjct: 74  LQKSGTCPVCR 84

>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5 Length = 55

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 233 ECAICKENLLVGDKMQELP-CKHTFHPPCLKPWLDEHNSCPICR 275
           ECA+C   L  G++ + LP C H FH  C+  WL  H++CP+CR
Sbjct: 7   ECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 50

>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain Length = 69

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 233 ECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQ 279
           +C IC   L  G+ ++ LPC H FH  C+  WL  +  CPICR +++
Sbjct: 16  KCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIE 62

>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger Protein 24 Length = 74

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 234 CAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPIC 274
           CA+C E+    D++   PCKH FH  CL  WL+    CP+C
Sbjct: 18  CAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLC 58

>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring Finger Protein 141 Length = 70

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 225 LDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHEL 278
           + +L  + EC IC +    G     LPC H+F   C+  W D H +CPICR ++
Sbjct: 9   VKQLTDEEECCICMD----GRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQM 58

>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein 38 Length = 75

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 234 CAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICR 275
           C +C  +      ++ LPC H FH  C+  WL  + +CPICR
Sbjct: 26  CVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICR 67

>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure Length = 138

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 222 EEIL----DKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHE 277
           EE+L    D L ++ +C IC E  +       L C H+F   C+  W+     CPICR +
Sbjct: 40  EEVLSHMNDVLENELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKD 96
Query: 278 LQTDDHA 284
           +++  ++
Sbjct: 97  IKSKTYS 103

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	314
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	2e-34
2ect_A	78	Ring finger protein 126; metal binding protein, st	8e-28
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	2e-23
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	1e-20
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	2e-20
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	4e-20
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	9e-19
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	4e-16
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	6e-16
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	7e-15
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	4e-14
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	8e-14
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	2e-12
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	2e-12
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	1e-10
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	2e-10
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	2e-10
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	4e-10
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	2e-09
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	2e-09
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	2e-08
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	2e-08
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	3e-08
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	3e-07
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	4e-08
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	7e-08
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	7e-08
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	1e-07
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	2e-07
3nw0_A	238	Non-structural maintenance of chromosomes element	1e-06
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	1e-06
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	4e-06
1z6u_A	150	NP95-like ring finger protein isoform B; structura	6e-06
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	8e-06
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	2e-05
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	2e-05
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	3e-05
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	3e-05
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	3e-05
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	3e-05
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	5e-05
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	6e-05
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	6e-05
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	1e-04
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	1e-04
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	3e-04
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	4e-04
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	5e-04
2lbm_A	142	Transcriptional regulator ATRX; metal binding prot	5e-04
2yql_A	56	PHD finger protein 21A; PHD domain, structural gen	5e-04
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	5e-04
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	7e-04

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91

 Score =  120 bits (302), Expect = 2e-34
 Identities = 33/88 (37%), Positives = 43/88 (48%), Gaps = 1/88 (1%)

Query: 191 IPEILETDSATPRVPPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDKMQEL 250
           +       S     PPASKE +  LP I +TE+     G +  C IC    + GD   EL
Sbjct: 1   MGHHHHHHSHMVANPPASKESIDALPEILVTEDHGAV-GQEMCCPICCSEYVKGDVATEL 59

Query: 251 PCKHTFHPPCLKPWLDEHNSCPICRHEL 278
           PC H FH PC+  WL +  +CP+CR   
Sbjct: 60  PCHHYFHKPCVSIWLQKSGTCPVCRCMF 87

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score =  102 bits (255), Expect = 8e-28
 Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 3/67 (4%)

Query: 221 TEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQT 280
           TEE +       EC +CKE+  +G+ +++LPC H FH  C+ PWL++H+SCP+CR  L  
Sbjct: 8   TEEHVGS---GLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG 64

Query: 281 DDHAYES 287
            + A   
Sbjct: 65  QNTATNP 71

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 90.5 bits (225), Expect = 2e-23
 Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 2/75 (2%)

Query: 207 ASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLD 266
            S     +LP         +       C +C  +      ++ LPC H FH  C+  WL 
Sbjct: 1   GSSGSSGQLPSYRFNPN--NHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLK 58

Query: 267 EHNSCPICRHELQTD 281
            + +CPICR +    
Sbjct: 59  ANRTCPICRADSGPS 73

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69

 Score = 82.8 bits (205), Expect = 1e-20
 Identities = 19/54 (35%), Positives = 29/54 (53%)

Query: 229 GHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDD 282
             + +C IC   L  G+ ++ LPC H FH  C+  WL  +  CPICR +++   
Sbjct: 12  DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQL 65

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 82.4 bits (204), Expect = 2e-20
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 221 TEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQT 280
           +   + +L  + EC IC +    G     LPC H+F   C+  W D H +CPICR ++  
Sbjct: 5   SSGRVKQLTDEEECCICMD----GRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQMTG 60

Query: 281 DDHA 284
            + +
Sbjct: 61  ANES 64

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 81.7 bits (202), Expect = 4e-20
 Identities = 19/52 (36%), Positives = 27/52 (51%)

Query: 227 KLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHEL 278
           +L     CA+C E+    D++   PCKH FH  CL  WL+    CP+C   +
Sbjct: 11  ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPV 62

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 77.7 bits (192), Expect = 9e-19
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 231 DAECAICKENLLVGDK-MQELPCKHTFHPPCLKPWLDEHNSCPICR 275
            + C IC E++         LPC H  H  C +  L E   CP+C 
Sbjct: 5   SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCS 50

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Length = 55

 Score = 70.3 bits (173), Expect = 4e-16
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 228 LGHDAECAICKENLLVGDKMQELP-CKHTFHPPCLKPWLDEHNSCPICRHEL 278
           +    ECA+C   L  G++ + LP C H FH  C+  WL  H++CP+CR  +
Sbjct: 2   MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 70.5 bits (173), Expect = 6e-16
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYES 287
              C IC E+    +    LPC H F   C+  W+ ++ +CP+C+  +++  H  ES
Sbjct: 5   AERCPICLEDP--SNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVVHTIES 59

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 67.6 bits (165), Expect = 7e-15
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 227 KLGHDAECAIC----KENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHEL 278
           +      C IC     E +  G  +    C H F   CL+  L   N+CP CR ++
Sbjct: 11  RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 65.2 bits (159), Expect = 4e-14
 Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 4/58 (6%)

Query: 229 GHDAECAIC----KENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDD 282
           G    C IC     E +  G  +    C H F   CL+  L   N+CP CR ++    
Sbjct: 1   GAMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 64.5 bits (157), Expect = 8e-14
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 233 ECAIC----KENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDD 282
            C IC     E +  G  +    C H F   CL+  L   N+CP CR ++    
Sbjct: 12  SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 60.9 bits (148), Expect = 2e-12
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 225 LDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQ 279
           L +L     C+ICK  L+  D      C HTF   C+       N CP C   + 
Sbjct: 9   LSELTPYILCSICKGYLI--DATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVH 61

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 60.7 bits (147), Expect = 2e-12
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 231 DAECAICKENLLVGDKMQELP-CKHTFHPPCLKPWLDEHNSCPICRHELQ 279
              C  C+      D +     C H+FH  C+  W+ ++N CP+C+ +  
Sbjct: 26  MDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 55.6 bits (134), Expect = 1e-10
 Identities = 18/58 (31%), Positives = 21/58 (36%), Gaps = 9/58 (15%)

Query: 227 KLGHDAECAICKENLLVGDKMQE---LPCKHTFHPPCLKPWLDEHNSCPICRHELQTD 281
                 ECAIC               LPCKH F   C+K        C +CR E+  D
Sbjct: 11  PSLTVPECAICL------QTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPED 62

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 56.1 bits (135), Expect = 2e-10
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 222 EEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHN-SCPICRHELQT 280
           E+ ++ +     C IC E L   D      C       C++ WL E    CP CR  LQ 
Sbjct: 13  EQSVESIAEVFRCFICMEKLR--DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70

Query: 281 DD 282
            +
Sbjct: 71  RE 72

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 56.0 bits (135), Expect = 2e-10
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 225 LDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDD 282
           + +L     C +C    +  D    + C H+F   C+  +L+    CPIC  ++    
Sbjct: 9   ITELNPHLMCVLCGGYFI--DATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTR 64

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74

 Score = 54.5 bits (131), Expect = 4e-10
 Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 4/48 (8%)

Query: 233 ECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNS--CPICRHEL 278
            C IC   L+ G   +   C    H PC+  +   +    CP C    
Sbjct: 17  ICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 62

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114

 Score = 53.7 bits (128), Expect = 2e-09
 Identities = 22/96 (22%), Positives = 32/96 (33%), Gaps = 27/96 (28%)

Query: 201 TPRVPPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDKMQE----------- 249
           +       ++V+ K      TEE+  K+  + +C IC E L V     +           
Sbjct: 2   SSGSSGEPEQVIRKY-----TEEL--KVAPEEDCIICMEKLAVASGYSDMTDSKALGPMV 54

Query: 250 ----LPCKHTFHPPCLKPWL-----DEHNSCPICRH 276
                 C H FH  CL         D    CP C+ 
Sbjct: 55  VGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKT 90

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 54.7 bits (131), Expect = 2e-09
 Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 17/95 (17%)

Query: 220 LTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQ 279
           +   + D L ++ +C IC E      +   L C H+F   C+  W+     CPICR +++
Sbjct: 53  VLSHMNDVLENELQCIICSEYF---IEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIK 109

Query: 280 TDDHAY--------------ESWKEREKEAQEERK 300
           +  ++                  KER      ERK
Sbjct: 110 SKTYSLVLDNCINKMVNNLSSEVKERRIVLIRERK 144

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Length = 381

 Score = 54.1 bits (129), Expect = 2e-08
 Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 16/82 (19%)

Query: 215 LPVITLTEEILDKLGHDAECAICKENLLVGDKMQE-----LPCKHTFHPPCLKPWLDE-- 267
           +P  +   ++ ++   +  C IC    L G ++         C    H  CL+ W     
Sbjct: 292 MPDWSDGPKLDEEDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLM 351

Query: 268 ---------HNSCPICRHELQT 280
                       CP C+ +L T
Sbjct: 352 DGKTFLEVSFGQCPFCKAKLST 373

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Length = 106

 Score = 50.6 bits (120), Expect = 2e-08
 Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 15/65 (23%)

Query: 230 HDAECAICKENLLVGDKMQE---------------LPCKHTFHPPCLKPWLDEHNSCPIC 274
               CAIC+ +++      +                 C H FH  C+  WL     CP+ 
Sbjct: 36  VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD 95

Query: 275 RHELQ 279
             E +
Sbjct: 96  NREWE 100

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 50.9 bits (121), Expect = 3e-08
 Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 4/70 (5%)

Query: 231 DAECAIC----KENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYE 286
              C IC     E +  G  +    C H F   CL+  L   N+CP CR ++    +   
Sbjct: 7   TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 66

Query: 287 SWKEREKEAQ 296
                     
Sbjct: 67  YIGSGTVSCP 76

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 47.9 bits (113), Expect = 3e-07
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 4/58 (6%)

Query: 230 HDAECAIC----KENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDH 283
               C IC     E +  G  +    C H F   CL+  L   N+CP CR ++    +
Sbjct: 71  GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 128

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 49.1 bits (117), Expect = 4e-08
 Identities = 11/50 (22%), Positives = 14/50 (28%), Gaps = 9/50 (18%)

Query: 233 ECAICKENLLVGDKMQE---LPCKHTFHPPCLKPWLDEHNSCPICRHELQ 279
            C IC++        Q      C+H F   C          C IC     
Sbjct: 17  RCFICRQ------AFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Length = 117

 Score = 49.5 bits (117), Expect = 7e-08
 Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 15/62 (24%)

Query: 231 DAECAICKENLLVGDKMQE---------------LPCKHTFHPPCLKPWLDEHNSCPICR 275
              CAIC+ +++      +                 C H FH  C+  WL     CP+  
Sbjct: 48  VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 107

Query: 276 HE 277
            E
Sbjct: 108 RE 109

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 49.0 bits (117), Expect = 7e-08
 Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 2/58 (3%)

Query: 225 LDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDD 282
           +  +     C IC E       M    C H +   C++ +L     CP C   +   D
Sbjct: 16  MKTIDDLLRCGICFEYFN--IAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPD 71

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 51.7 bits (123), Expect = 1e-07
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 8/70 (11%)

Query: 218 ITLTEEILDKLGHDAE----CAICKENLLVGDKMQELPCKHTFHPPCLKPWLD-EHNSCP 272
           I +T+E  +           C IC EN      ++  PC H     CL  W + E   CP
Sbjct: 315 IKVTQEQYELYCEMGSTFQLCKICAEND---KDVKIEPCGHLMCTSCLTSWQESEGQGCP 371

Query: 273 ICRHELQTDD 282
            CR E++  +
Sbjct: 372 FCRCEIKGTE 381

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 46.7 bits (111), Expect = 2e-07
 Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 4/59 (6%)

Query: 225 LDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHN-SCPICRHELQTDD 282
           +  +    +C  C    ++    Q   C H F   C+   L   +  C  C+  +  D 
Sbjct: 9   VKTVEDKYKCEKCHL--VLCSPKQ-TECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Length = 238

 Score = 48.2 bits (114), Expect = 1e-06
 Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 4/51 (7%)

Query: 233 ECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNS--CPICRHELQTD 281
            C IC   L+ G   +   C    H PC+  +   +    CP C      +
Sbjct: 182 ICNICHSLLIQGQSCET--CGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78

 Score = 44.7 bits (105), Expect = 1e-06
 Identities = 15/57 (26%), Positives = 19/57 (33%), Gaps = 2/57 (3%)

Query: 231 DAECAICKENLLVGDK-MQELPCKHTFHPPCLKPWLDEHN-SCPICRHELQTDDHAY 285
             EC +C E L + D       C +     C      + N  CP CR     D   Y
Sbjct: 11  PVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVY 67

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 44.2 bits (104), Expect = 4e-06
 Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 4/72 (5%)

Query: 209 KEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEH 268
             +  +    +  +  L K+    +C  C+E  LV   +    C+H     CL       
Sbjct: 30  ASLKDRPASGSPFQLFLSKVEETFQCICCQE--LVFRPIT-TVCQHNVCKDCLDRSFRAQ 86

Query: 269 -NSCPICRHELQ 279
             SCP CR++L 
Sbjct: 87  VFSCPACRYDLG 98

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 44.6 bits (105), Expect = 6e-06
 Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 4/69 (5%)

Query: 215 LPVITLTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLD-EHNSCPI 273
           L  +      L KL     C  C+E  LV   +    C H     CL+     +  SCP 
Sbjct: 62  LSHLVEGPNFLKKLEQSFMCVCCQE--LVYQPV-TTECFHNVCKDCLQRSFKAQVFSCPA 118

Query: 274 CRHELQTDD 282
           CRH+L  + 
Sbjct: 119 CRHDLGQNY 127

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 43.4 bits (102), Expect = 8e-06
 Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 4/64 (6%)

Query: 220 LTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNS-CPICRHEL 278
           L  +          C IC+  L   D ++   CKH F   C+   L    S CP CR+  
Sbjct: 12  LAVDFPAHFVKSISCQICEHILA--DPVE-TSCKHLFCRICILRCLKVMGSYCPSCRYPC 68

Query: 279 QTDD 282
              D
Sbjct: 69  FPTD 72

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 42.1 bits (99), Expect = 2e-05
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 4/51 (7%)

Query: 233 ECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNS-CPICRHELQTDD 282
           EC IC   L    +  + PC H F   C+   + +    CP+    L  + 
Sbjct: 20  ECPICLMAL---REAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117

 Score = 41.8 bits (98), Expect = 2e-05
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 221 TEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQT 280
           +   LD+L     C+ C    ++ + +    C+H F   C+   +     CP+C      
Sbjct: 12  SRAALDRLEKLLRCSRCTN--ILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWI 67

Query: 281 DD 282
            D
Sbjct: 68  QD 69

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 40.9 bits (96), Expect = 3e-05
 Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 226 DKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHN--SCPICRHELQTDD 282
           D +  +  C ICK+  ++ D +    C +++   C++  L E +  +CP C     + D
Sbjct: 10  DPIPDELLCLICKD--IMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 41.8 bits (98), Expect = 3e-05
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%)

Query: 231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHN-SCPICRHELQ 279
           + +C IC E +LV      LPC HT   PC +  +++ +  CP CR  + 
Sbjct: 15  ECQCGICME-ILVEPVT--LPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 40.7 bits (95), Expect = 3e-05
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 12/56 (21%)

Query: 234 CAICKENLLVGDKMQEL--PCK-----HTFHPPCLKPWLDEHNS--CPICRHELQT 280
           C IC      GD    L  PC      H  H  CL+ W+   ++  C +C++E   
Sbjct: 18  CRICHCE---GDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56

 Score = 40.0 bits (94), Expect = 3e-05
 Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 10/58 (17%)

Query: 222 EEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQ 279
           EE    L     C  C+       K+  LPC HT    CL+        CPIC+    
Sbjct: 1   EEEFQFL----RCQQCQA-EAKCPKL--LPCLHTLCSGCLE---ASGMQCPICQAPWP 48

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141

 Score = 41.6 bits (97), Expect = 5e-05
 Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 9/86 (10%)

Query: 199 SATPRVPPASKEVVAK-LPVITLTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFH 257
           +A    PP S E++        L  ++  K      C+ C+  L    +  +  C H + 
Sbjct: 2   AAASVTPPGSLELLQPGFSKTLLGTKLEAKY----LCSACRNVL---RRPFQAQCGHRYC 54

Query: 258 PPCLKPWLDEHNS-CPICRHELQTDD 282
             CL   L      C  C HE   ++
Sbjct: 55  SFCLASILSSGPQNCAACVHEGIYEE 80

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 42.0 bits (98), Expect = 6e-05
 Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 4/61 (6%)

Query: 223 EILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNS-CPICRHELQTD 281
           E    L    EC IC        +  + PC H F   C+   + +    CP+    L  +
Sbjct: 10  EFDPPLESKYECPICLM---ALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66

Query: 282 D 282
            
Sbjct: 67  Q 67

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 65

 Score = 39.5 bits (92), Expect = 6e-05
 Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 3/52 (5%)

Query: 231 DAECAICKENLLVGDKMQEL--PCKHTFHPPCLKPWLDEH-NSCPICRHELQ 279
           D  C  CK        ++ +   C HT    C+         +CP C   L+
Sbjct: 3   DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 13/73 (17%), Positives = 30/73 (41%), Gaps = 12/73 (16%)

Query: 216 PVITLTEEILDKLGHDAECAICKENLLVGDKMQE---LPCKHTFHPPCLKPWLDEHN--- 269
             +   + +++ +    EC IC       + ++E     C H F   C+   L++     
Sbjct: 6   LRVEEVQNVINAMQKILECPICL------ELIKEPVSTKCDHIFCKFCMLKLLNQKKGPS 59

Query: 270 SCPICRHELQTDD 282
            CP+C++++    
Sbjct: 60  QCPLCKNDITKRS 72

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 224 ILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHN---SCPICRHELQT 280
            ++KL  +  C IC + +L       + C H F   C+    +       CP+C+  ++ 
Sbjct: 13  FVNKLQEEVICPICLD-ILQKPVT--IDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69

Query: 281 DD 282
           + 
Sbjct: 70  NA 71

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165

 Score = 40.0 bits (93), Expect = 3e-04
 Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 14/87 (16%)

Query: 225 LDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCL-KPWLDEHNSCPICRHELQTDDH 283
              L  +  C IC +  ++ + M    C H F   C+       +  CP CR +L +   
Sbjct: 48  PRSLHSELMCPICLD--MLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRS 105

Query: 284 AYESW-----------KEREKEAQEER 299
                              E EA +ER
Sbjct: 106 LRPDPNFDALISKIYPSRDEYEAHQER 132

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Length = 61

 Score = 36.9 bits (86), Expect = 4e-04
 Identities = 8/49 (16%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 234 CAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDD 282
           CAI  +  +    +     +  F    L+ ++ +  + PI    L  ++
Sbjct: 6   CAISGK--VPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEE 52

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92

 Score = 37.8 bits (88), Expect = 5e-04
 Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 17/96 (17%)

Query: 216 PVITLTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHN--SCPI 273
           P+ +  + I D+L     C ICK+  ++ D +    C +++   C++  L E +  +CP 
Sbjct: 2   PLGSEDDPIPDEL----LCLICKD--IMTDAVVIPCCGNSYCDECIRTALLESDEHTCPT 55

Query: 274 CRHELQTDD---------HAYESWKEREKEAQEERK 300
           C     + D          A  ++K      +  RK
Sbjct: 56  CHQNDVSPDALIANKFLRQAVNNFKNETGYTKRLRK 91

>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A Length = 142

 Score = 38.6 bits (89), Expect = 5e-04
 Identities = 24/90 (26%), Positives = 31/90 (34%), Gaps = 20/90 (22%)

Query: 226 DKLGHDAECAICKE--NLLVGDKMQELPCKHTFHPPCLKPWLDEHN-----------SCP 272
           D  G D +C  C E  NL+  D      C + F   C+   L                C 
Sbjct: 58  DSDGMDEQCRWCAEGGNLICCDF-----CHNAFCKKCILRNLGRKELSTIMDENNQWYCY 112

Query: 273 ICRHE-LQTDDHAYESWKER-EKEAQEERK 300
           IC  E L     A  S  E  E+  Q+ +K
Sbjct: 113 ICHPEPLLDLVTACNSVFENLEQLLQQNKK 142

>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 56

 Score = 36.6 bits (85), Expect = 5e-04
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 11/58 (18%)

Query: 226 DKLGHDAECAICKE--NLLVGDKMQELPCKHTFHPPCLKPWLDEHNS----CPICRHE 277
              GH+  C++C++   LL+ D      C   +H  CL P L         CP C+ +
Sbjct: 4   GSSGHEDFCSVCRKSGQLLMCDT-----CSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 56

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3 Length = 60

 Score = 36.6 bits (85), Expect = 5e-04
 Identities = 14/54 (25%), Positives = 16/54 (29%), Gaps = 10/54 (18%)

Query: 234 CAICKENLLVGDKMQELPCK-----HTFHPPCLKPWLDEHNS--CPICRHELQT 280
           C IC E        +   C         H  CL  WL    +  C IC     T
Sbjct: 9   CWICNEE---LGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 37.0 bits (86), Expect = 7e-04
 Identities = 15/49 (30%), Positives = 18/49 (36%), Gaps = 4/49 (8%)

Query: 233 ECAICKENLLVGDKM-QELPCKHTFHPPCLKPWLDEHN---SCPICRHE 277
           EC IC E+        + L C HT    CL+  L        CP C   
Sbjct: 17  ECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKI 65

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	314
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.67
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.59
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.52
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.5
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.48
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.48
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.41
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.39
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.39
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.38
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.38
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	99.36
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.35
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.34
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.32
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.32
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	99.32
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.31
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.3
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.3
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.29
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.29
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.29
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.29
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.28
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.27
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.23
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	99.23
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.22
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.21
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.21
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	99.2
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.19
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.18
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.17
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.16
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.15
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	99.15
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	99.14
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	99.14
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	99.12
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.12
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	99.11
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	99.11
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	99.09
1z6u_A	150	NP95-like ring finger protein isoform B; structura	99.09
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	99.08
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.06
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	99.05
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	99.01
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	98.98
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.96
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.92
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.92
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.9
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.9
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.89
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.88
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.87
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.83
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.82
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.77
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.65
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	98.64
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	98.63
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.56
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.51
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.5
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.5
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	98.49
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.99
3nw0_A	238	Non-structural maintenance of chromosomes element	97.79
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	94.55
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	93.97
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	92.89
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	92.88
2xb1_A	105	Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro;	91.61
3lqh_A	183	Histone-lysine N-methyltransferase MLL; PHD finger	85.81
1we9_A	64	PHD finger family protein; structural genomics, PH	85.25
2lv9_A	98	Histone-lysine N-methyltransferase MLL5; zinc fing	83.75
1f62_A	51	Transcription factor WSTF; Zn-finger; NMR {Homo sa	83.28
3u5n_A	207	E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b	82.55
2l5u_A	61	Chromodomain-helicase-DNA-binding protein 4; CHD4,	81.31
1mm2_A	61	MI2-beta; PHD, zinc finger, protein scaffold, DNA	80.98
1wil_A	89	KIAA1045 protein; ring finger domain, structural g	80.8

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.67  E-value=4e-17  Score=127.74  Aligned_cols=80  Identities=40%  Similarity=0.862  Sum_probs=68.3

Q ss_pred             CCCCCCCCCHHHHhhCCCccchhHHhhhcCCcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccC
Q 021283          200 ATPRVPPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQ  279 (314)
Q Consensus       200 ~~~~~~~~s~e~i~~Lp~~~~~~~~~~~~~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~  279 (314)
                      ......+++++.++.||.+.+.... .....+..|+||++.|..++.++.+||+|.||..||..|+..+.+||+||.++.
T Consensus        10 ~~~~~~~~s~~~i~~lp~~~~~~~~-~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~   88 (91)
T 2l0b_A           10 HMVANPPASKESIDALPEILVTEDH-GAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP   88 (91)
T ss_dssp             CSSCCCCCCHHHHHTSCEEECCTTC-SSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred             CCcCCCCCCHHHHHhCCCeeecccc-cccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence            3445669999999999999887542 233457789999999988888999999999999999999999999999999986


Q ss_pred             C
Q 021283          280 T  280 (314)
Q Consensus       280 ~  280 (314)
                      +
T Consensus        89 ~   89 (91)
T 2l0b_A           89 P   89 (91)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.59  E-value=2e-16  Score=118.89  Aligned_cols=69  Identities=26%  Similarity=0.733  Sum_probs=57.5

Q ss_pred             HHhhCCCccchhHHhhhcCCcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCC
Q 021283          211 VVAKLPVITLTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTD  281 (314)
Q Consensus       211 ~i~~Lp~~~~~~~~~~~~~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~  281 (314)
                      .++.||...+...  +...++..|+||++.|..++.++.+||+|.||..||.+|+..+.+||+||.++.+.
T Consensus         5 ~i~~lp~~~~~~~--~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~   73 (75)
T 1x4j_A            5 SSGQLPSYRFNPN--NHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS   73 (75)
T ss_dssp             CCSSCCCEEBCSS--SCSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred             hHhhCCcEEecCc--cccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence            4567777776543  23345778999999998888889999999999999999999999999999998764

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.52  E-value=6.4e-15  Score=103.79  Aligned_cols=51  Identities=39%  Similarity=0.991  Sum_probs=46.5

Q ss_pred             CCcccccccccccccCCccEEeC-CCCccChhhHHHHHhcCCCCCCcccccC
Q 021283          229 GHDAECAICKENLLVGDKMQELP-CKHTFHPPCLKPWLDEHNSCPICRHELQ  279 (314)
Q Consensus       229 ~~~~~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~WL~~~~tCPvCR~~l~  279 (314)
                      .++.+|+||++.+..++.++.+| |+|.||..||.+|+..+.+||+||.++.
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence            35679999999998888889998 9999999999999999999999999874

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.50  E-value=1e-14  Score=107.58  Aligned_cols=54  Identities=35%  Similarity=0.917  Sum_probs=48.3

Q ss_pred             CCcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCCC
Q 021283          229 GHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDD  282 (314)
Q Consensus       229 ~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d  282 (314)
                      ..+..|+||++.|..+..++.+||+|.||..||..|+..+.+||+||..+....
T Consensus        12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   65 (69)
T 2kiz_A           12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQL   65 (69)
T ss_dssp             TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred             CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence            446789999999987778899999999999999999999999999999987543

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=1.7e-14  Score=107.80  Aligned_cols=55  Identities=35%  Similarity=0.808  Sum_probs=48.6

Q ss_pred             cCCcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCCC
Q 021283          228 LGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDD  282 (314)
Q Consensus       228 ~~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d  282 (314)
                      ...+..|+||++.|..+..++.+||+|.||..||..|+..+.+||+||.++....
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~   66 (74)
T 2ep4_A           12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA   66 (74)
T ss_dssp             CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred             CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccccc
Confidence            3456799999999988788888999999999999999999999999999986543

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.48  E-value=1.9e-14  Score=108.59  Aligned_cols=56  Identities=45%  Similarity=1.194  Sum_probs=49.5

Q ss_pred             CCcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCCCcc
Q 021283          229 GHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHA  284 (314)
Q Consensus       229 ~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d~~  284 (314)
                      ..+..|+||++.|.....++.+||+|.||..||..|+..+.+||+||.++...+..
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~   68 (78)
T 2ect_A           13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTA   68 (78)
T ss_dssp             SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSC
T ss_pred             CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccC
Confidence            45679999999998777788899999999999999999999999999999765543

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.41  E-value=1.1e-13  Score=97.28  Aligned_cols=50  Identities=30%  Similarity=0.702  Sum_probs=43.7

Q ss_pred             CcccccccccccccC-CccEEeCCCCccChhhHHHHHhcCCCCCCcccccC
Q 021283          230 HDAECAICKENLLVG-DKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQ  279 (314)
Q Consensus       230 ~~~~C~ICLe~~~~~-~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~  279 (314)
                      .+..|+||++.+..+ ..++.++|+|.||..||..|+..+.+||+||.++.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence            467899999998543 35788899999999999999999999999999874

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.39  E-value=1.5e-13  Score=110.90  Aligned_cols=52  Identities=31%  Similarity=0.644  Sum_probs=41.9

Q ss_pred             CcccccccccccccCC---------------ccEEeCCCCccChhhHHHHH-----hcCCCCCCcccccCCC
Q 021283          230 HDAECAICKENLLVGD---------------KMQELPCKHTFHPPCLKPWL-----DEHNSCPICRHELQTD  281 (314)
Q Consensus       230 ~~~~C~ICLe~~~~~~---------------~v~~LPCgH~FH~~CI~~WL-----~~~~tCPvCR~~l~~~  281 (314)
                      .+..|+||++.|..+.               .++.++|+|.||..||..||     ..+.+||+||..+...
T Consensus        24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~   95 (114)
T 1v87_A           24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK   95 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred             CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence            3569999999996532               23478899999999999999     4567999999988643

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.39  E-value=1.3e-13  Score=99.46  Aligned_cols=53  Identities=26%  Similarity=0.631  Sum_probs=45.6

Q ss_pred             CcccccccccccccC----CccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCCC
Q 021283          230 HDAECAICKENLLVG----DKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDD  282 (314)
Q Consensus       230 ~~~~C~ICLe~~~~~----~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d  282 (314)
                      ++..|+||++.+...    ..++.++|||.||..||..|+..+.+||+||.++...+
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   58 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR   58 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence            467999999998642    34578999999999999999999999999999997654

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.38  E-value=1.3e-13  Score=101.73  Aligned_cols=54  Identities=26%  Similarity=0.637  Sum_probs=46.1

Q ss_pred             CCcccccccccccccC----CccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCCC
Q 021283          229 GHDAECAICKENLLVG----DKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDD  282 (314)
Q Consensus       229 ~~~~~C~ICLe~~~~~----~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d  282 (314)
                      .++..|+||++.+...    ..++.++|||.||..||..|+..+.+||+||.++...+
T Consensus         8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   65 (71)
T 3ng2_A            8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR   65 (71)
T ss_dssp             TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCS
T ss_pred             CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhh
Confidence            3467999999998642    34588899999999999999999999999999997654

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=1.9e-13  Score=100.02  Aligned_cols=52  Identities=27%  Similarity=0.660  Sum_probs=44.5

Q ss_pred             CCcccccccccccccC----CccEEeCCCCccChhhHHHHHhcCCCCCCcccccCC
Q 021283          229 GHDAECAICKENLLVG----DKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQT  280 (314)
Q Consensus       229 ~~~~~C~ICLe~~~~~----~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~  280 (314)
                      .+...|+||++.+...    ..++.++|+|.||..||..|+..+.+||+||.++..
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH   68 (69)
T ss_dssp             TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred             CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence            4567999999998642    334788999999999999999999999999998864

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=1.8e-13  Score=104.86  Aligned_cols=52  Identities=29%  Similarity=0.819  Sum_probs=42.1

Q ss_pred             Cccccccccccccc-----------CCccEEeC-CCCccChhhHHHHHhcCCCCCCcccccCCC
Q 021283          230 HDAECAICKENLLV-----------GDKMQELP-CKHTFHPPCLKPWLDEHNSCPICRHELQTD  281 (314)
Q Consensus       230 ~~~~C~ICLe~~~~-----------~~~v~~LP-CgH~FH~~CI~~WL~~~~tCPvCR~~l~~~  281 (314)
                      ++..|+||++.|..           ++.++.++ |+|.||..||.+||..+.+||+||.++...
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~   77 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ   77 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence            35678888888743           34466666 999999999999999999999999988643

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.35  E-value=1.4e-13  Score=101.68  Aligned_cols=54  Identities=35%  Similarity=0.890  Sum_probs=46.6

Q ss_pred             cCCcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCCCcch
Q 021283          228 LGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAY  285 (314)
Q Consensus       228 ~~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d~~~  285 (314)
                      ..+...|+||++.+..    +.+||+|.||..||..|+..+.+||+||.++...+..+
T Consensus        12 ~~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~   65 (70)
T 2ecn_A           12 LTDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANESS   65 (70)
T ss_dssp             CCCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCCCC
T ss_pred             CCCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCccc
Confidence            3456799999999853    78999999999999999999999999999998766543

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.34  E-value=6.1e-13  Score=99.03  Aligned_cols=54  Identities=28%  Similarity=0.559  Sum_probs=45.2

Q ss_pred             cCCcccccccccccccCCccEEe-CCCCccChhhHHHHHhcCCCCCCcccccCCCCcc
Q 021283          228 LGHDAECAICKENLLVGDKMQEL-PCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHA  284 (314)
Q Consensus       228 ~~~~~~C~ICLe~~~~~~~v~~L-PCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d~~  284 (314)
                      +.+...|+||++.+..   ++.+ +|+|.||..||..|+..+..||+||.++...+..
T Consensus        12 ~~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~   66 (72)
T 2djb_A           12 LTPYILCSICKGYLID---ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPL   66 (72)
T ss_dssp             CCGGGSCTTTSSCCSS---CEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSC
T ss_pred             cCCCCCCCCCChHHHC---cCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccccc
Confidence            3456799999999843   4555 8999999999999999999999999999766543

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.32  E-value=9.3e-13  Score=110.27  Aligned_cols=50  Identities=30%  Similarity=0.937  Sum_probs=44.1

Q ss_pred             CcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCCC
Q 021283          230 HDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDD  282 (314)
Q Consensus       230 ~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d  282 (314)
                      ++..|+||++.|.   .++.+||||.||..||..|+..+.+||+||.++....
T Consensus        52 ~~~~C~iC~~~~~---~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~  101 (138)
T 4ayc_A           52 NELQCIICSEYFI---EAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKT  101 (138)
T ss_dssp             HHSBCTTTCSBCS---SEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred             ccCCCcccCcccC---CceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCCC
Confidence            3568999999984   4678999999999999999999999999999997543

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.32  E-value=2.4e-12  Score=99.85  Aligned_cols=77  Identities=19%  Similarity=0.497  Sum_probs=55.2

Q ss_pred             cCCcccccccccccccCCccEEeC-CCCccChhhHHHHHhcC--CCCCCcccccC-CCCcchhhHHHHHHHHHHHHhhhc
Q 021283          228 LGHDAECAICKENLLVGDKMQELP-CKHTFHPPCLKPWLDEH--NSCPICRHELQ-TDDHAYESWKEREKEAQEERKGAA  303 (314)
Q Consensus       228 ~~~~~~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~WL~~~--~tCPvCR~~l~-~~d~~~~~~~~r~~~~~~e~~~~~  303 (314)
                      +.++..|+||++.|.   .++.+| |||.||..||..|+..+  ..||+||.++. .++.......+.--+.-...++..
T Consensus        10 ~~~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~~~   86 (92)
T 3ztg_A           10 IPDELLCLICKDIMT---DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGYT   86 (92)
T ss_dssp             CCTTTEETTTTEECS---SCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHTCC
T ss_pred             CCcCCCCCCCChhhc---CceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHhHH
Confidence            345789999999984   467899 99999999999999754  59999999974 444444444444444444555555


Q ss_pred             cccC
Q 021283          304 NAVR  307 (314)
Q Consensus       304 ~~~~  307 (314)
                      +.+|
T Consensus        87 ~~~r   90 (92)
T 3ztg_A           87 KRLR   90 (92)
T ss_dssp             CCCC
T ss_pred             hhhh
Confidence            5544

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=99.32  E-value=7.5e-13  Score=106.90  Aligned_cols=50  Identities=28%  Similarity=0.664  Sum_probs=42.8

Q ss_pred             CcccccccccccccC---------------CccEEeCCCCccChhhHHHHHhcCCCCCCcccccC
Q 021283          230 HDAECAICKENLLVG---------------DKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQ  279 (314)
Q Consensus       230 ~~~~C~ICLe~~~~~---------------~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~  279 (314)
                      ++..|+||++.|...               ..++.++|+|.||..||.+||..+.+||+||.++.
T Consensus        36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~  100 (106)
T 3dpl_R           36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  100 (106)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence            467899999998643               13567899999999999999999999999999864

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=1.2e-12  Score=100.25  Aligned_cols=55  Identities=29%  Similarity=0.564  Sum_probs=46.4

Q ss_pred             cCCcccccccccccccCCc-cEEeCCCCccChhhHHHHHhcC---CCCCCcccccCCCC
Q 021283          228 LGHDAECAICKENLLVGDK-MQELPCKHTFHPPCLKPWLDEH---NSCPICRHELQTDD  282 (314)
Q Consensus       228 ~~~~~~C~ICLe~~~~~~~-v~~LPCgH~FH~~CI~~WL~~~---~tCPvCR~~l~~~d  282 (314)
                      ..+...|+||++.|...+. ++.++|||.||..||..|+..+   ..||+||..+...+
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~   70 (88)
T 2ct2_A           12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITS   70 (88)
T ss_dssp             CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred             ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence            3457899999999976543 7888999999999999999976   79999999886553

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.30  E-value=9.5e-13  Score=96.47  Aligned_cols=49  Identities=29%  Similarity=0.837  Sum_probs=42.9

Q ss_pred             CcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCC
Q 021283          230 HDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQT  280 (314)
Q Consensus       230 ~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~  280 (314)
                      .+..|+||++.+.  +.++.+||||.||..||..|+..+.+||+||.++..
T Consensus         4 ~~~~C~IC~~~~~--~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   52 (68)
T 1chc_A            4 VAERCPICLEDPS--NYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCCSSCCSCCC--SCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred             CCCCCeeCCcccc--CCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence            3578999999984  345789999999999999999999999999998854

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=7.9e-13  Score=98.18  Aligned_cols=48  Identities=35%  Similarity=0.684  Sum_probs=42.7

Q ss_pred             CcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCC
Q 021283          230 HDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQT  280 (314)
Q Consensus       230 ~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~  280 (314)
                      ++..|+||++.+.   ..+.+||+|.||..||..|+..+.+||+||..+..
T Consensus        14 ~~~~C~IC~~~~~---~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   61 (71)
T 2d8t_A           14 TVPECAICLQTCV---HPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE   61 (71)
T ss_dssp             SCCBCSSSSSBCS---SEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred             CCCCCccCCcccC---CCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence            4679999999983   46788999999999999999999999999999863

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.29  E-value=2e-12  Score=97.31  Aligned_cols=55  Identities=20%  Similarity=0.393  Sum_probs=46.2

Q ss_pred             CCcccccccccccccCCccEEeCCCCccChhhHHHHHhc-CCCCCCcccccCCCCcchh
Q 021283          229 GHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDE-HNSCPICRHELQTDDHAYE  286 (314)
Q Consensus       229 ~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~-~~tCPvCR~~l~~~d~~~~  286 (314)
                      .++..|+||++.|.   .++.++|||.||..||..|+.. +.+||+||.++...+....
T Consensus         6 ~~~~~C~IC~~~~~---~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n   61 (78)
T 1t1h_A            6 PEYFRCPISLELMK---DPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPN   61 (78)
T ss_dssp             SSSSSCTTTSCCCS---SEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEEC
T ss_pred             cccCCCCCcccccc---CCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccC
Confidence            45789999999984   4677899999999999999986 7899999999976654433

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.29  E-value=1.5e-12  Score=96.50  Aligned_cols=52  Identities=25%  Similarity=0.642  Sum_probs=44.0

Q ss_pred             cCCcccccccccccccCCccEEeCCCCccChhhHHHHHh---cCCCCCCcccccCCCC
Q 021283          228 LGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLD---EHNSCPICRHELQTDD  282 (314)
Q Consensus       228 ~~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~---~~~tCPvCR~~l~~~d  282 (314)
                      +.++..|+||++.+.   .++.++|||.||..||..|+.   ....||+||.++..++
T Consensus        17 ~~~~~~C~IC~~~~~---~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~   71 (73)
T 2ysl_A           17 LQEEVICPICLDILQ---KPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA   71 (73)
T ss_dssp             CCCCCBCTTTCSBCS---SEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred             CccCCEeccCCcccC---CeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence            345789999999984   467789999999999999997   4568999999997654

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.29  E-value=8.7e-13  Score=104.67  Aligned_cols=61  Identities=30%  Similarity=0.650  Sum_probs=48.5

Q ss_pred             cCCcccccccccccccCCccEE-eCCCCccChhhHHHHHhcC-CCCCCcccccCCCCcchhhHHHH
Q 021283          228 LGHDAECAICKENLLVGDKMQE-LPCKHTFHPPCLKPWLDEH-NSCPICRHELQTDDHAYESWKER  291 (314)
Q Consensus       228 ~~~~~~C~ICLe~~~~~~~v~~-LPCgH~FH~~CI~~WL~~~-~tCPvCR~~l~~~d~~~~~~~~r  291 (314)
                      +.++..|+||++.|.   .++. ++|||.||..||..|+... .+||+||.++...+.....+.+.
T Consensus        19 l~~~~~C~IC~~~~~---~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~   81 (100)
T 3lrq_A           19 IAEVFRCFICMEKLR---DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEE   81 (100)
T ss_dssp             HHHHTBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHH
T ss_pred             CCCCCCCccCCcccc---CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHH
Confidence            345789999999994   3566 8999999999999999987 69999999997665544444333

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.29  E-value=1.6e-12  Score=95.06  Aligned_cols=51  Identities=22%  Similarity=0.570  Sum_probs=42.8

Q ss_pred             CCcccccccccccccCCccEEeCCCCccChhhHHHHHh-cCCCCCCcccccCCCC
Q 021283          229 GHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLD-EHNSCPICRHELQTDD  282 (314)
Q Consensus       229 ~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~-~~~tCPvCR~~l~~~d  282 (314)
                      .+...|+||++.+.   .++.++|||.||..||..|+. ....||+||.++..++
T Consensus        13 ~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~   64 (66)
T 2ecy_A           13 EDKYKCEKCHLVLC---SPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK   64 (66)
T ss_dssp             CCCEECTTTCCEES---SCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred             CcCCCCCCCChHhc---CeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence            45689999999984   345589999999999999995 5679999999987654

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.28  E-value=1.8e-12  Score=97.20  Aligned_cols=53  Identities=25%  Similarity=0.659  Sum_probs=44.1

Q ss_pred             cCCcccccccccccccCCccEEeC-CCCccChhhHHHHHhcC--CCCCCcccccCCCCc
Q 021283          228 LGHDAECAICKENLLVGDKMQELP-CKHTFHPPCLKPWLDEH--NSCPICRHELQTDDH  283 (314)
Q Consensus       228 ~~~~~~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~WL~~~--~tCPvCR~~l~~~d~  283 (314)
                      +.++..|+||++.|.   .++.+| |||.||..||..|+..+  .+||+||.++...+.
T Consensus        12 ~~~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~   67 (74)
T 2yur_A           12 IPDELLCLICKDIMT---DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDA   67 (74)
T ss_dssp             SCGGGSCSSSCCCCT---TCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTT
T ss_pred             CCCCCCCcCCChHHh---CCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccc
Confidence            345679999999984   467799 99999999999999865  689999998765543

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=3e-12  Score=97.25  Aligned_cols=48  Identities=21%  Similarity=0.485  Sum_probs=42.7

Q ss_pred             CCcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccC
Q 021283          229 GHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQ  279 (314)
Q Consensus       229 ~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~  279 (314)
                      .....|+||++.+.   .++.+||||.||..||..|+....+||+||.++.
T Consensus        13 ~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (81)
T 2csy_A           13 EIPFRCFICRQAFQ---NPVVTKCRHYFCESCALEHFRATPRCYICDQPTG   60 (81)
T ss_dssp             CCCSBCSSSCSBCC---SEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred             CCCCCCcCCCchhc---CeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence            34679999999984   3667999999999999999999999999999986

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.23  E-value=5.2e-12  Score=95.64  Aligned_cols=52  Identities=25%  Similarity=0.655  Sum_probs=44.1

Q ss_pred             cCCcccccccccccccCCccEEeCCCCccChhhHHHHHhc------CCCCCCcccccCCCC
Q 021283          228 LGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDE------HNSCPICRHELQTDD  282 (314)
Q Consensus       228 ~~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~------~~tCPvCR~~l~~~d  282 (314)
                      +.++..|+||++.+.   .++.+||+|.||..||..|+..      ...||+||.++..++
T Consensus        16 ~~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~   73 (85)
T 2ecw_A           16 IKEEVTCPICLELLK---EPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN   73 (85)
T ss_dssp             CCTTTSCTTTCSCCS---SCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTC
T ss_pred             CccCCCCcCCChhhC---cceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHh
Confidence            345679999999984   3567999999999999999987      679999999987654

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=3.6e-12  Score=97.91  Aligned_cols=53  Identities=25%  Similarity=0.666  Sum_probs=44.2

Q ss_pred             CcccccccccccccCCccEEeCCC-----CccChhhHHHHHhcC--CCCCCcccccCCCCc
Q 021283          230 HDAECAICKENLLVGDKMQELPCK-----HTFHPPCLKPWLDEH--NSCPICRHELQTDDH  283 (314)
Q Consensus       230 ~~~~C~ICLe~~~~~~~v~~LPCg-----H~FH~~CI~~WL~~~--~tCPvCR~~l~~~d~  283 (314)
                      ++..|.||++.+..++.+ .+||+     |.||..||.+||..+  .+||+||..+.....
T Consensus        14 ~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~   73 (80)
T 2d8s_A           14 SQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETK   73 (80)
T ss_dssp             TSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCC
T ss_pred             CCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcc
Confidence            457899999999766654 68996     999999999999865  499999999976543

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.22  E-value=1.8e-12  Score=97.42  Aligned_cols=52  Identities=27%  Similarity=0.622  Sum_probs=43.7

Q ss_pred             cCCcccccccccccccCCccEEeCCCCccChhhHHHHHhc-------CCCCCCcccccCCCC
Q 021283          228 LGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDE-------HNSCPICRHELQTDD  282 (314)
Q Consensus       228 ~~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~-------~~tCPvCR~~l~~~d  282 (314)
                      +.++..|+||++.|.   .++.+||||.||..||..|+..       ...||+||.++...+
T Consensus         9 ~~~~~~C~IC~~~~~---~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~   67 (79)
T 2egp_A            9 VQEEVTCPICLELLT---EPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEH   67 (79)
T ss_dssp             CCCCCEETTTTEECS---SCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSG
T ss_pred             cccCCCCcCCCcccC---CeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhh
Confidence            445789999999984   3566899999999999999986       668999999987543

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.21  E-value=6.3e-12  Score=99.00  Aligned_cols=52  Identities=23%  Similarity=0.573  Sum_probs=43.9

Q ss_pred             CcccccccccccccCCccEEe-CCCCccChhhHHHHHhcCCCCCCcccccCCCCcc
Q 021283          230 HDAECAICKENLLVGDKMQEL-PCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHA  284 (314)
Q Consensus       230 ~~~~C~ICLe~~~~~~~v~~L-PCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d~~  284 (314)
                      +...|+||++.|.   .++.+ +|||.||..||..|+..+.+||+||..+...+..
T Consensus        21 ~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~   73 (99)
T 2y43_A           21 DLLRCGICFEYFN---IAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLK   73 (99)
T ss_dssp             HHTBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCE
T ss_pred             CCCCcccCChhhC---CcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCC
Confidence            3679999999984   35555 8999999999999999999999999999764443

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.21  E-value=6.1e-12  Score=95.25  Aligned_cols=52  Identities=33%  Similarity=0.748  Sum_probs=44.1

Q ss_pred             cCCcccccccccccccCCccEEeCCCCccChhhHHHHHhc------CCCCCCcccccCCCC
Q 021283          228 LGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDE------HNSCPICRHELQTDD  282 (314)
Q Consensus       228 ~~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~------~~tCPvCR~~l~~~d  282 (314)
                      +.+...|+||++.+.   .++.+||||.||..||..|+..      ...||+||..+...+
T Consensus        16 ~~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~   73 (85)
T 2ecv_A           16 VKEEVTCPICLELLT---QPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN   73 (85)
T ss_dssp             CCCCCCCTTTCSCCS---SCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred             ccCCCCCCCCCcccC---CceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence            345789999999984   3566899999999999999987      779999999987654

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=99.20  E-value=1.6e-12  Score=106.79  Aligned_cols=50  Identities=28%  Similarity=0.704  Sum_probs=1.1

Q ss_pred             CcccccccccccccC-------------C--ccEEeCCCCccChhhHHHHHhcCCCCCCcccccC
Q 021283          230 HDAECAICKENLLVG-------------D--KMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQ  279 (314)
Q Consensus       230 ~~~~C~ICLe~~~~~-------------~--~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~  279 (314)
                      .+..|+||++.|...             +  .++.++|+|.||..||.+||..+.+||+||.++.
T Consensus        47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~  111 (117)
T 4a0k_B           47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  111 (117)
T ss_dssp             CC---------------------------------------------------------------
T ss_pred             CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence            467999999999642             1  2344689999999999999999999999999864

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.19  E-value=9.8e-12  Score=101.88  Aligned_cols=48  Identities=27%  Similarity=0.636  Sum_probs=42.0

Q ss_pred             CcccccccccccccCCccEEeCCCCccChhhHHHHHhcCC-CCCCcccccCC
Q 021283          230 HDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHN-SCPICRHELQT  280 (314)
Q Consensus       230 ~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~-tCPvCR~~l~~  280 (314)
                      ++..|+||++.|.   .++.+||||.||..||..|+..+. .||+||.++..
T Consensus        51 ~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           51 ETFQCICCQELVF---RPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR   99 (124)
T ss_dssp             HHTBCTTTSSBCS---SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             cCCCCCcCChHHc---CcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence            4679999999984   467789999999999999998554 99999999976

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.18  E-value=9.9e-12  Score=99.48  Aligned_cols=51  Identities=24%  Similarity=0.720  Sum_probs=44.0

Q ss_pred             cCCcccccccccccccCCccEEe-CCCCccChhhHHHHHhcCCCCCCcccccCCC
Q 021283          228 LGHDAECAICKENLLVGDKMQEL-PCKHTFHPPCLKPWLDEHNSCPICRHELQTD  281 (314)
Q Consensus       228 ~~~~~~C~ICLe~~~~~~~v~~L-PCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~  281 (314)
                      +.++..|+||++.|.   .++.+ +|||.||..||..|+..+.+||+||..+...
T Consensus        12 ~~~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~   63 (108)
T 2ckl_A           12 LNPHLMCVLCGGYFI---DATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT   63 (108)
T ss_dssp             HGGGTBCTTTSSBCS---SEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred             cCCcCCCccCChHHh---CcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence            345789999999984   35565 9999999999999999999999999999765

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.17  E-value=1.5e-11  Score=88.97  Aligned_cols=44  Identities=30%  Similarity=0.699  Sum_probs=37.8

Q ss_pred             cCCcccccccccccccCCccEEeCCCCccChhhHHHHHh---cCCCCCCc
Q 021283          228 LGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLD---EHNSCPIC  274 (314)
Q Consensus       228 ~~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~---~~~tCPvC  274 (314)
                      +.++..|+||++.+.   .++.++|||.||..||..|+.   ....||+|
T Consensus        17 ~~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           17 LQEEVICPICLDILQ---KPVTIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCBCTTTCSBCS---SCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             CccCCCCCcCCchhC---CeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            455789999999984   467789999999999999998   45689998

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.16  E-value=1.1e-11  Score=101.11  Aligned_cols=54  Identities=26%  Similarity=0.621  Sum_probs=46.2

Q ss_pred             CcccccccccccccC----CccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCCCc
Q 021283          230 HDAECAICKENLLVG----DKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDH  283 (314)
Q Consensus       230 ~~~~C~ICLe~~~~~----~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d~  283 (314)
                      ++..|+||++.|...    ..++.++|||.||..||..|+..+.+||+||..+...+.
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l   63 (133)
T 4ap4_A            6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY   63 (133)
T ss_dssp             CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCE
T ss_pred             CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccc
Confidence            467999999998642    345889999999999999999999999999999976554

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.15  E-value=2.1e-11  Score=88.79  Aligned_cols=53  Identities=23%  Similarity=0.508  Sum_probs=42.3

Q ss_pred             ccccccccc-ccccCCc-cEEeCCCCccChhhHHHHHhc-CCCCCCcccccCCCCc
Q 021283          231 DAECAICKE-NLLVGDK-MQELPCKHTFHPPCLKPWLDE-HNSCPICRHELQTDDH  283 (314)
Q Consensus       231 ~~~C~ICLe-~~~~~~~-v~~LPCgH~FH~~CI~~WL~~-~~tCPvCR~~l~~~d~  283 (314)
                      +..|+||++ .+..... .+.++|||.||..||..|+.. ...||+||.++...+.
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~   58 (65)
T 1g25_A            3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF   58 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred             CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccc
Confidence            578999999 6754332 356899999999999999764 4689999999976553

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.15  E-value=1.2e-11  Score=98.91  Aligned_cols=51  Identities=25%  Similarity=0.664  Sum_probs=42.6

Q ss_pred             CcccccccccccccCCccEEeCCCCccChhhHHHHHhcCC---CCCCcccccCCCCc
Q 021283          230 HDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHN---SCPICRHELQTDDH  283 (314)
Q Consensus       230 ~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~---tCPvCR~~l~~~d~  283 (314)
                      +...|+||++.+.   .++.+||||.||..||..|+..+.   +||+||.++...+.
T Consensus        20 ~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~   73 (112)
T 1jm7_A           20 KILECPICLELIK---EPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL   73 (112)
T ss_dssp             HHTSCSSSCCCCS---SCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTC
T ss_pred             CCCCCcccChhhc---CeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhc
Confidence            3579999999984   355689999999999999998654   89999999876553

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=99.14  E-value=5.5e-11  Score=94.48  Aligned_cols=70  Identities=13%  Similarity=0.040  Sum_probs=54.2

Q ss_pred             CCcccccccccccccCCccEEeCCC-CccChhhHHHHHhcCCCCCCcccccCCCCcchhhHHHHHHHHHHHHhh
Q 021283          229 GHDAECAICKENLLVGDKMQELPCK-HTFHPPCLKPWLDEHNSCPICRHELQTDDHAYESWKEREKEAQEERKG  301 (314)
Q Consensus       229 ~~~~~C~ICLe~~~~~~~v~~LPCg-H~FH~~CI~~WL~~~~tCPvCR~~l~~~d~~~~~~~~r~~~~~~e~~~  301 (314)
                      .+...||||++.|   ..++.++|| |.|++.||..||..+.+||+||.++...+.......++.-+.=..+++
T Consensus        20 p~~~~CpI~~~~m---~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~   90 (98)
T 1wgm_A           20 CDEFLDPIMSTLM---CDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERK   90 (98)
T ss_dssp             CTTTBCTTTCSBC---SSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHST
T ss_pred             cHhcCCcCccccc---cCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcc
Confidence            4578999999999   457889999 999999999999988999999999987765544444444433333433

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=99.14  E-value=3.9e-11  Score=92.72  Aligned_cols=55  Identities=11%  Similarity=0.056  Sum_probs=47.2

Q ss_pred             CCcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCCCcchh
Q 021283          229 GHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYE  286 (314)
Q Consensus       229 ~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d~~~~  286 (314)
                      .+...||||++.|   ..++.++|||.|++.||..|+..+.+||+||.++...+....
T Consensus        12 p~~~~CpI~~~~m---~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn   66 (85)
T 2kr4_A           12 PDEFRDPLMDTLM---TDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPV   66 (85)
T ss_dssp             CTTTBCTTTCSBC---SSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEEC
T ss_pred             chheECcccCchh---cCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchH
Confidence            4578999999999   458889999999999999999989999999999976654333

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=99.12  E-value=5.6e-11  Score=94.77  Aligned_cols=58  Identities=10%  Similarity=0.026  Sum_probs=49.0

Q ss_pred             CCcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCCCcchhhHH
Q 021283          229 GHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYESWK  289 (314)
Q Consensus       229 ~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d~~~~~~~  289 (314)
                      .+...||||++.|   ..++.+||||.||+.||..||..+.+||+||.++...+.......
T Consensus        27 p~~~~CpI~~~~m---~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~L   84 (100)
T 2kre_A           27 PDEFRDPLMDTLM---TDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPEL   84 (100)
T ss_dssp             STTTBCTTTCSBC---SSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHH
T ss_pred             cHhhCCcCccCcc---cCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHH
Confidence            4578999999999   458889999999999999999988999999999987665444333

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.12  E-value=2.6e-11  Score=85.73  Aligned_cols=44  Identities=32%  Similarity=0.856  Sum_probs=36.7

Q ss_pred             cCCcccccccccccccCCccEEeCCCCccChhhHHHHHh---cCCCCCCc
Q 021283          228 LGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLD---EHNSCPIC  274 (314)
Q Consensus       228 ~~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~---~~~tCPvC  274 (314)
                      ..+...|+||++.+..   ++.++|+|.||..||..|+.   ...+||+|
T Consensus        12 ~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           12 LQVEASCSVCLEYLKE---PVIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             SCCCCBCSSSCCBCSS---CCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             cccCCCCccCCcccCc---cEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            3457799999999853   46689999999999999954   56789998

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=3.5e-11  Score=91.15  Aligned_cols=55  Identities=22%  Similarity=0.530  Sum_probs=44.9

Q ss_pred             CcccccccccccccCCccEEeCCCCccChhhHHHHHhcC--CCCCCcccccCCCCcchh
Q 021283          230 HDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEH--NSCPICRHELQTDDHAYE  286 (314)
Q Consensus       230 ~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~--~tCPvCR~~l~~~d~~~~  286 (314)
                      ...+|+||.+.+..+...  ..|+|.||..||.+||+.+  .+||+||.++..+..+++
T Consensus        14 ~i~~C~IC~~~i~~g~~C--~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~~~~   70 (74)
T 2ct0_A           14 AVKICNICHSLLIQGQSC--ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPKSG   70 (74)
T ss_dssp             SSCBCSSSCCBCSSSEEC--SSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCCCCC
T ss_pred             CCCcCcchhhHcccCCcc--CCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCCCCC
Confidence            357999999999765432  2699999999999999977  899999999876665543

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=99.11  E-value=2.2e-11  Score=99.09  Aligned_cols=53  Identities=26%  Similarity=0.578  Sum_probs=44.6

Q ss_pred             cCCcccccccccccccCCccEEeCCCCccChhhHHHHHhcCC-CCCCcccccCCCCc
Q 021283          228 LGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHN-SCPICRHELQTDDH  283 (314)
Q Consensus       228 ~~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~-tCPvCR~~l~~~d~  283 (314)
                      +.+...|+||++.+.   .++.++|||.||..||..|+.... +||+||.++...+.
T Consensus        15 ~~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~   68 (118)
T 3hct_A           15 LESKYECPICLMALR---EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQL   68 (118)
T ss_dssp             CCGGGBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGC
T ss_pred             CCCCCCCCcCChhhc---CeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhc
Confidence            445789999999984   457789999999999999998765 99999999976543

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=99.09  E-value=2.4e-11  Score=104.33  Aligned_cols=49  Identities=29%  Similarity=0.664  Sum_probs=41.3

Q ss_pred             CcccccccccccccCCccEEe-CCCCccChhhHHHHHhc-CCCCCCcccccCCC
Q 021283          230 HDAECAICKENLLVGDKMQEL-PCKHTFHPPCLKPWLDE-HNSCPICRHELQTD  281 (314)
Q Consensus       230 ~~~~C~ICLe~~~~~~~v~~L-PCgH~FH~~CI~~WL~~-~~tCPvCR~~l~~~  281 (314)
                      +...|+||++.|..   ++.+ ||||.||..||..|+.. +..||+||.++...
T Consensus        53 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~  103 (165)
T 2ckl_B           53 SELMCPICLDMLKN---TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK  103 (165)
T ss_dssp             HHHBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSG
T ss_pred             CCCCCcccChHhhC---cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCc
Confidence            35699999999852   4555 89999999999999997 77899999998643

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=99.09  E-value=3.3e-11  Score=102.66  Aligned_cols=49  Identities=29%  Similarity=0.654  Sum_probs=42.8

Q ss_pred             CcccccccccccccCCccEEeCCCCccChhhHHHHHhcCC-CCCCcccccCCC
Q 021283          230 HDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHN-SCPICRHELQTD  281 (314)
Q Consensus       230 ~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~-tCPvCR~~l~~~  281 (314)
                      +...|+||++.|.   .++.+||||.||..||..|+.... .||+||.++...
T Consensus        77 ~~~~C~IC~~~~~---~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~  126 (150)
T 1z6u_A           77 QSFMCVCCQELVY---QPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN  126 (150)
T ss_dssp             HHTBCTTTSSBCS---SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred             cCCEeecCChhhc---CCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence            3579999999984   467799999999999999998654 899999999876

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=99.08  E-value=2.3e-11  Score=98.45  Aligned_cols=51  Identities=31%  Similarity=0.588  Sum_probs=43.8

Q ss_pred             CcccccccccccccCCccEEeCCCCccChhhHHHHHhc-CCCCCCcccccCCCCc
Q 021283          230 HDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDE-HNSCPICRHELQTDDH  283 (314)
Q Consensus       230 ~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~-~~tCPvCR~~l~~~d~  283 (314)
                      ++..|+||++.+.   .++.++|||.||..||..|+.. ..+||+||.++...+.
T Consensus        22 ~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~   73 (116)
T 1rmd_A           22 KSISCQICEHILA---DPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDL   73 (116)
T ss_dssp             HHTBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred             CCCCCCCCCcHhc---CcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhc
Confidence            3579999999984   4667899999999999999986 7799999999876553

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.06  E-value=4.5e-11  Score=97.51  Aligned_cols=54  Identities=28%  Similarity=0.705  Sum_probs=45.6

Q ss_pred             CCccccccccccccc----CCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCCC
Q 021283          229 GHDAECAICKENLLV----GDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDD  282 (314)
Q Consensus       229 ~~~~~C~ICLe~~~~----~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d  282 (314)
                      .+...|+||++.|..    +..++.++|||.||..||.+|+..+.+||+||.++..++
T Consensus        70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~  127 (133)
T 4ap4_A           70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR  127 (133)
T ss_dssp             SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred             CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence            346789999999864    233478899999999999999999999999999997554

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=99.05  E-value=2.2e-11  Score=98.36  Aligned_cols=47  Identities=34%  Similarity=0.923  Sum_probs=41.1

Q ss_pred             cccccccccccccCCccEEeCCCCccChhhHHHHHhc-CCCCCCcccccCC
Q 021283          231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDE-HNSCPICRHELQT  280 (314)
Q Consensus       231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~-~~tCPvCR~~l~~  280 (314)
                      +..|+||++.+.   .++.++|||.||..||..|+.. ...||+||..+..
T Consensus        15 ~~~C~iC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (115)
T 3l11_A           15 ECQCGICMEILV---EPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS   62 (115)
T ss_dssp             HHBCTTTCSBCS---SCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred             CCCCccCCcccC---ceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence            579999999984   4778899999999999999976 6689999998853

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=99.01  E-value=1.4e-10  Score=88.42  Aligned_cols=55  Identities=27%  Similarity=0.584  Sum_probs=42.8

Q ss_pred             cCCcccccccccccccCCccEEeC--CCCccChhhHHHHHh-cCCCCCCcccccCCCCc
Q 021283          228 LGHDAECAICKENLLVGDKMQELP--CKHTFHPPCLKPWLD-EHNSCPICRHELQTDDH  283 (314)
Q Consensus       228 ~~~~~~C~ICLe~~~~~~~v~~LP--CgH~FH~~CI~~WL~-~~~tCPvCR~~l~~~d~  283 (314)
                      +.++.+|+||++.+...+ +..+|  |||.||..|+..|+. ....||+||.++...+.
T Consensus         8 ~~~~~~CpICle~~~~~d-~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~   65 (78)
T 1e4u_A            8 KEDPVECPLCMEPLEIDD-INFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA   65 (78)
T ss_dssp             CCCCCBCTTTCCBCCTTT-TTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred             cccCCcCCccCccCcccc-ccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence            345789999999885433 33444  999999999999875 45689999999976554

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=98.98  E-value=1.7e-10  Score=97.38  Aligned_cols=52  Identities=27%  Similarity=0.538  Sum_probs=43.6

Q ss_pred             hcCCcccccccccccccCCccEEeCCCCccChhhHHHHHhcCC-CCCCcccccCCC
Q 021283          227 KLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHN-SCPICRHELQTD  281 (314)
Q Consensus       227 ~~~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~-tCPvCR~~l~~~  281 (314)
                      .+.+...|+||++.|.   .++.++|||.||..||..|+.... +||+||.++..+
T Consensus        27 ~l~~~~~C~IC~~~~~---~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~   79 (141)
T 3knv_A           27 KLEAKYLCSACRNVLR---RPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYE   79 (141)
T ss_dssp             GCCGGGBCTTTCSBCS---SEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCC
T ss_pred             cCCcCcCCCCCChhhc---CcEECCCCCccCHHHHHHHHhcCCCCCCCCCCccccc
Confidence            4566789999999984   357789999999999999998665 899999987543

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.96  E-value=1.2e-10  Score=94.64  Aligned_cols=51  Identities=24%  Similarity=0.537  Sum_probs=42.6

Q ss_pred             CCcccccccccccccCCccEEe-CCCCccChhhHHHHHhcCCCCCCcccccCCCCcc
Q 021283          229 GHDAECAICKENLLVGDKMQEL-PCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHA  284 (314)
Q Consensus       229 ~~~~~C~ICLe~~~~~~~v~~L-PCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d~~  284 (314)
                      .+...|+||++.|.   .++.+ +|||.||..||..|+.  ..||+||.++...+..
T Consensus        20 ~~~~~C~IC~~~~~---~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~~   71 (117)
T 1jm7_B           20 EKLLRCSRCTNILR---EPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLK   71 (117)
T ss_dssp             HHTTSCSSSCSCCS---SCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCC
T ss_pred             hhCCCCCCCChHhh---CccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcccccc
Confidence            34689999999984   45667 8999999999999997  7899999999655443

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.92  E-value=5.5e-10  Score=108.56  Aligned_cols=48  Identities=35%  Similarity=0.835  Sum_probs=42.3

Q ss_pred             CcccccccccccccCCccEEeCCCCccChhhHHHHHh-cCCCCCCcccccCC
Q 021283          230 HDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLD-EHNSCPICRHELQT  280 (314)
Q Consensus       230 ~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~-~~~tCPvCR~~l~~  280 (314)
                      ....|+||++.+   ..++.+||||.||..||..|+. .+.+||+||.++..
T Consensus       331 ~~~~C~ICle~~---~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~  379 (389)
T 2y1n_A          331 TFQLCKICAEND---KDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG  379 (389)
T ss_dssp             SSSBCTTTSSSB---CCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred             CCCCCCccCcCC---CCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence            346999999998   4478899999999999999999 68899999998864

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.92  E-value=5e-10  Score=102.13  Aligned_cols=53  Identities=15%  Similarity=0.088  Sum_probs=44.2

Q ss_pred             CcccccccccccccCCccEEeCCCCccChhhHHHHHhcC-CCCCCcccccCCCCcch
Q 021283          230 HDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEH-NSCPICRHELQTDDHAY  285 (314)
Q Consensus       230 ~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~-~tCPvCR~~l~~~d~~~  285 (314)
                      +...||||++.|   ..++.+||||.||..||..|+..+ .+||+||.++...+...
T Consensus       207 ~~~~c~i~~~~~---~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~  260 (281)
T 2c2l_A          207 DYLCGKISFELM---REPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIP  260 (281)
T ss_dssp             STTBCTTTCSBC---SSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEE
T ss_pred             cccCCcCcCCHh---cCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcc
Confidence            467999999999   457889999999999999999864 45999999997654433

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.90  E-value=5.1e-10  Score=81.88  Aligned_cols=46  Identities=24%  Similarity=0.483  Sum_probs=39.7

Q ss_pred             cccccccccccccCCccEEe--CCCCc-cChhhHHHHHhcCCCCCCcccccC
Q 021283          231 DAECAICKENLLVGDKMQEL--PCKHT-FHPPCLKPWLDEHNSCPICRHELQ  279 (314)
Q Consensus       231 ~~~C~ICLe~~~~~~~v~~L--PCgH~-FH~~CI~~WL~~~~tCPvCR~~l~  279 (314)
                      +..|+||++...   .++.+  ||||. ||..|+..|+..+..||+||.++.
T Consensus         8 ~~~C~IC~~~~~---~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~   56 (64)
T 2vje_A            8 IEPCVICQGRPK---NGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ   56 (64)
T ss_dssp             GSCCTTTSSSCS---CEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred             cCCCCcCCCCCC---CEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence            568999999873   34555  99999 899999999998899999999884

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.90  E-value=2.9e-10  Score=85.36  Aligned_cols=45  Identities=22%  Similarity=0.581  Sum_probs=39.0

Q ss_pred             CCcccccccccccccCCccEEeCCCCc-cChhhHHHHHhcCCCCCCcccccCC
Q 021283          229 GHDAECAICKENLLVGDKMQELPCKHT-FHPPCLKPWLDEHNSCPICRHELQT  280 (314)
Q Consensus       229 ~~~~~C~ICLe~~~~~~~v~~LPCgH~-FH~~CI~~WL~~~~tCPvCR~~l~~  280 (314)
                      .++..|+||++.+   ..++.+||||. ||..|+..|    ..||+||.++..
T Consensus        22 ~~~~~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~   67 (74)
T 4ic3_A           22 QEEKLCKICMDRN---IAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF   67 (74)
T ss_dssp             HHHTBCTTTSSSB---CCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred             ccCCCCCCCCCCC---CCEEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence            3467999999997   34788999999 999999999    789999998864

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.89  E-value=2.9e-10  Score=80.83  Aligned_cols=48  Identities=27%  Similarity=0.528  Sum_probs=39.9

Q ss_pred             CCcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCCC
Q 021283          229 GHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDD  282 (314)
Q Consensus       229 ~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d  282 (314)
                      .+...|+||++.|.   .++.+||||.||..||..|   ...||+||..+...+
T Consensus         4 ~~~~~C~IC~~~~~---~p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~   51 (56)
T 1bor_A            4 FQFLRCQQCQAEAK---CPKLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGA   51 (56)
T ss_dssp             CCCSSCSSSCSSCB---CCSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred             ccCCCceEeCCccC---CeEEcCCCCcccHHHHccC---CCCCCcCCcEeecCC
Confidence            34678999999985   3577999999999999884   568999999987554

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.88  E-value=6e-10  Score=87.41  Aligned_cols=59  Identities=24%  Similarity=0.492  Sum_probs=45.2

Q ss_pred             CcccccccccccccCCccEEeC-CCCccChhhHHHHHhcC------CCCCC--cccc-cCCCCcchhhHHHH
Q 021283          230 HDAECAICKENLLVGDKMQELP-CKHTFHPPCLKPWLDEH------NSCPI--CRHE-LQTDDHAYESWKER  291 (314)
Q Consensus       230 ~~~~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~WL~~~------~tCPv--CR~~-l~~~d~~~~~~~~r  291 (314)
                      ....||||++.|.   .++.+| |||.|++.||..||..+      .+||+  |+.. +...+.......++
T Consensus         6 ~~~~CPI~~~~~~---dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~   74 (94)
T 2yu4_A            6 SGFTCPITKEEMK---KPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRR   74 (94)
T ss_dssp             SCCBCTTTCSBCS---SEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHH
T ss_pred             cEeECcCcCchhc---CCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHH
Confidence            4679999999994   478886 99999999999999864      48999  9877 65555444433333

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.87  E-value=6.9e-10  Score=95.47  Aligned_cols=53  Identities=26%  Similarity=0.584  Sum_probs=44.4

Q ss_pred             cCCcccccccccccccCCccEEeCCCCccChhhHHHHHhcC-CCCCCcccccCCCCc
Q 021283          228 LGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEH-NSCPICRHELQTDDH  283 (314)
Q Consensus       228 ~~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~-~tCPvCR~~l~~~d~  283 (314)
                      +.+...|+||++.|.   .++.++|||.||..||..|+... .+||+||.++...+.
T Consensus        15 ~~~~~~C~IC~~~~~---~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~   68 (170)
T 3hcs_A           15 LESKYECPICLMALR---EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQL   68 (170)
T ss_dssp             CCGGGBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGC
T ss_pred             CCCCCCCCCCChhhc---CcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhh
Confidence            455789999999984   35778999999999999999864 499999999976543

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.83  E-value=1.2e-09  Score=79.69  Aligned_cols=46  Identities=24%  Similarity=0.502  Sum_probs=39.1

Q ss_pred             cccccccccccccCCccEEe--CCCCc-cChhhHHHHHhcCCCCCCcccccC
Q 021283          231 DAECAICKENLLVGDKMQEL--PCKHT-FHPPCLKPWLDEHNSCPICRHELQ  279 (314)
Q Consensus       231 ~~~C~ICLe~~~~~~~v~~L--PCgH~-FH~~CI~~WL~~~~tCPvCR~~l~  279 (314)
                      ...|+||++...   ..+.+  ||||. ||..|+..|...+..||+||.++.
T Consensus         7 ~~~C~IC~~~~~---~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~   55 (63)
T 2vje_B            7 LKPCSLCEKRPR---DGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ   55 (63)
T ss_dssp             GSBCTTTSSSBS---CEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred             CCCCcccCCcCC---CeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence            568999999863   23445  99998 999999999988889999999884

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.82  E-value=2.9e-09  Score=93.39  Aligned_cols=56  Identities=16%  Similarity=0.047  Sum_probs=45.7

Q ss_pred             CcccccccccccccCCccEEeCCCCccChhhHHHHHhcC-CCCCCcccccCCCCcchhhH
Q 021283          230 HDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEH-NSCPICRHELQTDDHAYESW  288 (314)
Q Consensus       230 ~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~-~tCPvCR~~l~~~d~~~~~~  288 (314)
                      +...||||++.|.   .++.+||||.|+..||..|+..+ .+||+||.++...+......
T Consensus       105 ~~f~CPI~~elm~---DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~  161 (179)
T 2f42_A          105 DYLCGKISFELMR---EPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLA  161 (179)
T ss_dssp             GGGBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHH
T ss_pred             HhhcccCccccCC---CCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHH
Confidence            4679999999994   57888999999999999999864 47999999997665443333

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.77  E-value=1.7e-09  Score=81.20  Aligned_cols=46  Identities=22%  Similarity=0.586  Sum_probs=38.1

Q ss_pred             CcccccccccccccCCccEEeCCCCc-cChhhHHHHHhcCCCCCCcccccCCCC
Q 021283          230 HDAECAICKENLLVGDKMQELPCKHT-FHPPCLKPWLDEHNSCPICRHELQTDD  282 (314)
Q Consensus       230 ~~~~C~ICLe~~~~~~~v~~LPCgH~-FH~~CI~~WL~~~~tCPvCR~~l~~~d  282 (314)
                      ++..|+||++.+   ..++.+||||. ||..|+..+    ..||+||.++...-
T Consensus        24 ~~~~C~IC~~~~---~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~   70 (75)
T 2ecg_A           24 EEKLCKICMDRN---IAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFKQ   70 (75)
T ss_dssp             HHHSCSSSCSSC---CCBCCSSSCCCCBCHHHHHHC----SBCTTTCCBCCCCC
T ss_pred             CCCCCCcCCCCC---CCEEEecCCCHHHHHHHhhCC----CCCccCCceecCcE
Confidence            456899999997   34777999999 999999653    78999999987643

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.65  E-value=4.1e-09  Score=80.25  Aligned_cols=46  Identities=28%  Similarity=0.617  Sum_probs=38.6

Q ss_pred             CCcccccccccccccCCccEEeCCCCc-cChhhHHHHHhcCCCCCCcccccCCC
Q 021283          229 GHDAECAICKENLLVGDKMQELPCKHT-FHPPCLKPWLDEHNSCPICRHELQTD  281 (314)
Q Consensus       229 ~~~~~C~ICLe~~~~~~~v~~LPCgH~-FH~~CI~~WL~~~~tCPvCR~~l~~~  281 (314)
                      .++..|+||++.+   ..++.+||||. ||..|+..|    ..||+||.++...
T Consensus        16 ~~~~~C~IC~~~~---~~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~   62 (79)
T 2yho_A           16 KEAMLCMVCCEEE---INSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEHV   62 (79)
T ss_dssp             HHHTBCTTTSSSB---CCEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred             CCCCEeEEeCccc---CcEEEECCCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence            3457999999987   45788999999 999999987    3899999988643

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=98.64  E-value=4.8e-09  Score=100.17  Aligned_cols=52  Identities=29%  Similarity=0.714  Sum_probs=40.0

Q ss_pred             CCcccccccccccccCCc----cE-EeCCCCccChhhHHHHHhcC-----------CCCCCcccccCC
Q 021283          229 GHDAECAICKENLLVGDK----MQ-ELPCKHTFHPPCLKPWLDEH-----------NSCPICRHELQT  280 (314)
Q Consensus       229 ~~~~~C~ICLe~~~~~~~----v~-~LPCgH~FH~~CI~~WL~~~-----------~tCPvCR~~l~~  280 (314)
                      ....+|+||++.+..+..    +. ..+|+|.||..||.+||+..           ++||+||.+|..
T Consensus       306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~  373 (381)
T 3k1l_B          306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST  373 (381)
T ss_dssp             CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred             cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence            346799999999876222    12 24599999999999999842           479999998853

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=98.63  E-value=1.3e-08  Score=93.92  Aligned_cols=58  Identities=17%  Similarity=0.409  Sum_probs=45.5

Q ss_pred             CCcccccccccccccCCccEEeCCCCccChhhHHHHHhcC--CCCCC--cccccCCCCcchhhH
Q 021283          229 GHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEH--NSCPI--CRHELQTDDHAYESW  288 (314)
Q Consensus       229 ~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~--~tCPv--CR~~l~~~d~~~~~~  288 (314)
                      .....||||++.|.  ++|+...|||.||+.||..|+..+  .+||+  ||..+...+...+..
T Consensus       179 ~~el~CPIcl~~f~--DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~  240 (267)
T 3htk_C          179 KIELTCPITCKPYE--APLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPI  240 (267)
T ss_dssp             BCCSBCTTTSSBCS--SEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHH
T ss_pred             ceeeECcCccCccc--CCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHH
Confidence            34679999999994  444445899999999999999864  47999  999887766554433

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.56  E-value=3e-08  Score=73.33  Aligned_cols=44  Identities=32%  Similarity=0.838  Sum_probs=37.5

Q ss_pred             CcccccccccccccCCccEEeCCCCc-cChhhHHHHHhcCCCCCCcccccCC
Q 021283          230 HDAECAICKENLLVGDKMQELPCKHT-FHPPCLKPWLDEHNSCPICRHELQT  280 (314)
Q Consensus       230 ~~~~C~ICLe~~~~~~~v~~LPCgH~-FH~~CI~~WL~~~~tCPvCR~~l~~  280 (314)
                      +...|+||++..   ..++.+||+|. ||..|+..    ...||+||.+|..
T Consensus        14 ~~~~C~IC~~~~---~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~   58 (68)
T 2ea5_A           14 NSKDCVVCQNGT---VNWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE   58 (68)
T ss_dssp             CSSCCSSSSSSC---CCCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred             CCCCCCCcCcCC---CCEEEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence            467899999986   45888999999 99999984    4789999998864

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.51  E-value=3.3e-08  Score=77.04  Aligned_cols=48  Identities=25%  Similarity=0.581  Sum_probs=37.3

Q ss_pred             CcccccccccccccCCccEEeCCCCccChhhHHHHHhc--------CCCCCC--cccc
Q 021283          230 HDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDE--------HNSCPI--CRHE  277 (314)
Q Consensus       230 ~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~--------~~tCPv--CR~~  277 (314)
                      +..+|+||++.+.........+|+|.||..||..++..        ...||.  |+..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            35789999999864333333479999999999999873        237999  9988

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.50  E-value=2.3e-08  Score=95.93  Aligned_cols=48  Identities=25%  Similarity=0.681  Sum_probs=40.7

Q ss_pred             hhcCCcccccccccccccCCccEEeCCCCc-cChhhHHHHHhcCCCCCCcccccCC
Q 021283          226 DKLGHDAECAICKENLLVGDKMQELPCKHT-FHPPCLKPWLDEHNSCPICRHELQT  280 (314)
Q Consensus       226 ~~~~~~~~C~ICLe~~~~~~~v~~LPCgH~-FH~~CI~~WL~~~~tCPvCR~~l~~  280 (314)
                      ..+.++..|+||++.+   ..++.+||||. ||..|+..|    ..||+||.++..
T Consensus       290 ~~l~~~~~C~IC~~~~---~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~  338 (345)
T 3t6p_A          290 RRLQEERTCKVCMDKE---VSVVFIPCGHLVVCQECAPSL----RKCPICRGIIKG  338 (345)
T ss_dssp             HHHHTTCBCTTTSSSB---CCEEEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred             HhCcCCCCCCccCCcC---CceEEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence            3445678999999998   35788999999 999999998    689999998854

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.50  E-value=2.9e-08  Score=72.10  Aligned_cols=49  Identities=16%  Similarity=0.283  Sum_probs=42.1

Q ss_pred             cccccccccccccCCccEEe-CCCCccChhhHHHHHhcCCCCCCcccccCCCC
Q 021283          231 DAECAICKENLLVGDKMQEL-PCKHTFHPPCLKPWLDEHNSCPICRHELQTDD  282 (314)
Q Consensus       231 ~~~C~ICLe~~~~~~~v~~L-PCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d  282 (314)
                      ...|+||++.+.   .++.+ +|||.|.+.||.+||..+.+||+++.++...+
T Consensus         3 ~~~CpIs~~~m~---dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~   52 (61)
T 2bay_A            3 HMLCAISGKVPR---RPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEE   52 (61)
T ss_dssp             -CCCTTTCSCCS---SEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGG
T ss_pred             eEEecCCCCCCC---CCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhh
Confidence            468999999994   46777 89999999999999998889999999986544

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=98.49  E-value=7.9e-08  Score=69.60  Aligned_cols=48  Identities=33%  Similarity=0.753  Sum_probs=37.8

Q ss_pred             CcccccccccccccCCccEEeCCC--C---ccChhhHHHHHhc--CCCCCCcccccCC
Q 021283          230 HDAECAICKENLLVGDKMQELPCK--H---TFHPPCLKPWLDE--HNSCPICRHELQT  280 (314)
Q Consensus       230 ~~~~C~ICLe~~~~~~~v~~LPCg--H---~FH~~CI~~WL~~--~~tCPvCR~~l~~  280 (314)
                      +...|.||++..  ++. ..+||.  |   .||..|+.+|+..  +.+||+||+++..
T Consensus         5 ~~~~CrIC~~~~--~~~-l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~   59 (60)
T 1vyx_A            5 DVPVCWICNEEL--GNE-RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT   59 (60)
T ss_dssp             SCCEETTTTEEC--SCC-CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred             CCCEeEEeecCC--CCc-eecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence            456899999984  233 368965  4   8999999999974  5789999998754

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.99  E-value=3.3e-06  Score=66.97  Aligned_cols=46  Identities=26%  Similarity=0.497  Sum_probs=38.9

Q ss_pred             cccccccccccCCccEEeCCCCccChhhHHHHHh-cCCCCCCcccccCC
Q 021283          233 ECAICKENLLVGDKMQELPCKHTFHPPCLKPWLD-EHNSCPICRHELQT  280 (314)
Q Consensus       233 ~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~-~~~tCPvCR~~l~~  280 (314)
                      .|++|--.+.  ...+.+||+|+||.+|+..|.+ ...+||.|+.+|..
T Consensus         3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r   49 (101)
T 3vk6_A            3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR   49 (101)
T ss_dssp             BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred             ecCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence            5888888774  4678899999999999999985 56899999998864

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=97.79  E-value=1e-05  Score=73.74  Aligned_cols=52  Identities=23%  Similarity=0.593  Sum_probs=41.6

Q ss_pred             CcccccccccccccCCccEEeC-CCCccChhhHHHHHhcCC--CCCCcccccCCCCcc
Q 021283          230 HDAECAICKENLLVGDKMQELP-CKHTFHPPCLKPWLDEHN--SCPICRHELQTDDHA  284 (314)
Q Consensus       230 ~~~~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~WL~~~~--tCPvCR~~l~~~d~~  284 (314)
                      ....|.||.+.+..+.   ..+ |+|.||..|+..|++.+.  .||.|+.+.+...+.
T Consensus       179 ~i~~C~iC~~iv~~g~---~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~~  233 (238)
T 3nw0_A          179 AVKICNICHSLLIQGQ---SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPK  233 (238)
T ss_dssp             TCCBCTTTCSBCSSCE---ECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCCC
T ss_pred             CCCcCcchhhHHhCCc---ccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Confidence            3678999999987543   333 999999999999998654  899999988765543

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=93.97  E-value=0.022  Score=43.99  Aligned_cols=35  Identities=17%  Similarity=0.451  Sum_probs=25.8

Q ss_pred             cccccccccccccCCccEEeCCCCccChhhHHH-HH
Q 021283          231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKP-WL  265 (314)
Q Consensus       231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~-WL  265 (314)
                      +..|+||.+.+...-...-++|+|.||..|+.. |.
T Consensus         3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~   38 (101)
T 2jun_A            3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP   38 (101)
T ss_dssp             CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred             CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence            568999998643322233388999999999998 53

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=92.89  E-value=0.08  Score=38.55  Aligned_cols=45  Identities=24%  Similarity=0.592  Sum_probs=33.0

Q ss_pred             CcccccccccccccCCccEEeC-CCCccChhhHHHHHhcCC----CCCCccccc
Q 021283          230 HDAECAICKENLLVGDKMQELP-CKHTFHPPCLKPWLDEHN----SCPICRHEL  278 (314)
Q Consensus       230 ~~~~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~WL~~~~----tCPvCR~~l  278 (314)
                      ....|.||.+.   ++ ++.-- |...||..|+.+.|....    .||.|....
T Consensus        11 ~~~~C~vC~~~---~~-ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~   60 (66)
T 2lri_C           11 PGARCGVCGDG---TD-VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV   60 (66)
T ss_dssp             TTCCCTTTSCC---TT-CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred             CCCCcCCCCCC---Ce-EEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence            35689999753   33 33333 999999999998887543    799997654

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A

Probab=92.88  E-value=0.12  Score=55.29  Aligned_cols=52  Identities=15%  Similarity=0.156  Sum_probs=44.8

Q ss_pred             CCcccccccccccccCCccEEeCCC-CccChhhHHHHHhcCCCCCCcccccCCCCc
Q 021283          229 GHDAECAICKENLLVGDKMQELPCK-HTFHPPCLKPWLDEHNSCPICRHELQTDDH  283 (314)
Q Consensus       229 ~~~~~C~ICLe~~~~~~~v~~LPCg-H~FH~~CI~~WL~~~~tCPvCR~~l~~~d~  283 (314)
                      .+...|||-++-+   ..++.+|.| +.|-+.+|..||..+.+||+-|.++...+.
T Consensus       889 P~~F~cPIs~~lM---~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~l  941 (968)
T 3m62_A          889 PDEFLDPLMYTIM---KDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDV  941 (968)
T ss_dssp             CGGGBCTTTCSBC---SSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGC
T ss_pred             cHHhCCcchhhHH---hCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccc
Confidence            4567899999998   458899987 689999999999999999999999976543

>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}

Probab=91.61  E-value=0.0098  Score=47.32  Aligned_cols=80  Identities=18%  Similarity=0.215  Sum_probs=44.0

Q ss_pred             cccccccccccccCCccEEe--CCCCccChhhHHHH------H----hcCCCCCCcccccCCCCcchhhHHHHHHHHHHH
Q 021283          231 DAECAICKENLLVGDKMQEL--PCKHTFHPPCLKPW------L----DEHNSCPICRHELQTDDHAYESWKEREKEAQEE  298 (314)
Q Consensus       231 ~~~C~ICLe~~~~~~~v~~L--PCgH~FH~~CI~~W------L----~~~~tCPvCR~~l~~~d~~~~~~~~r~~~~~~e  298 (314)
                      ...|+||...+......+..  .|...||..|+.--      +    ...-.||.|+........... .+.-..-...-
T Consensus         3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~~~~~~~~-sk~~yvfst~l   81 (105)
T 2xb1_A            3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEGSGSGSG-SQFVYVFTTHL   81 (105)
T ss_dssp             CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTTTC---------CEEECHHH
T ss_pred             cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCCCCCCCCC-cccceEeccch
Confidence            56899999998655444444  48899999997321      1    033479999875432221111 11111112233


Q ss_pred             HhhhccccCCCcc
Q 021283          299 RKGAANAVRGGEY  311 (314)
Q Consensus       299 ~~~~~~~~~~~~~  311 (314)
                      +..|+.|+.+|+|
T Consensus        82 an~aAea~~~g~~   94 (105)
T 2xb1_A           82 ANTAAEAVLQGRA   94 (105)
T ss_dssp             HHHHHHHHHTTSS
T ss_pred             hhhHHHHHhcchH
Confidence            4445557777765

>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A

Probab=85.81  E-value=0.31  Score=42.36  Aligned_cols=47  Identities=21%  Similarity=0.419  Sum_probs=33.7

Q ss_pred             ccccccccccccCCc---cEEeC-CCCccChhhHHH------HHh-----cCCCCCCccccc
Q 021283          232 AECAICKENLLVGDK---MQELP-CKHTFHPPCLKP------WLD-----EHNSCPICRHEL  278 (314)
Q Consensus       232 ~~C~ICLe~~~~~~~---v~~LP-CgH~FH~~CI~~------WL~-----~~~tCPvCR~~l  278 (314)
                      ..|+||...+..++.   .+..- |...||..|+.-      -+.     ..-.||.|+..-
T Consensus         3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~   64 (183)
T 3lqh_A            3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH   64 (183)
T ss_dssp             CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred             CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence            469999999977652   45544 999999999732      121     156899998754

>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=85.25  E-value=0.15  Score=36.38  Aligned_cols=48  Identities=23%  Similarity=0.539  Sum_probs=33.2

Q ss_pred             CcccccccccccccCCccEEeC-CCCccChhhHHHHHh-----cCCCCCCcccc
Q 021283          230 HDAECAICKENLLVGDKMQELP-CKHTFHPPCLKPWLD-----EHNSCPICRHE  277 (314)
Q Consensus       230 ~~~~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~WL~-----~~~tCPvCR~~  277 (314)
                      +...|+||...+..+...+.-- |...||..|+.--..     ..-.||.|+..
T Consensus         5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k   58 (64)
T 1we9_A            5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK   58 (64)
T ss_dssp             SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred             CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence            4568999998875444444443 999999999854321     34579999753

>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}

Probab=83.75  E-value=0.3  Score=38.04  Aligned_cols=44  Identities=23%  Similarity=0.306  Sum_probs=28.9

Q ss_pred             cccccccccccccCCccEEeC-CCCccChhhHHHHHhc---CCCCCCccc
Q 021283          231 DAECAICKENLLVGDKMQELP-CKHTFHPPCLKPWLDE---HNSCPICRH  276 (314)
Q Consensus       231 ~~~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~WL~~---~~tCPvCR~  276 (314)
                      ...| ||-.....+. ++..- |...||..|+..-+..   .-.||.|+.
T Consensus        28 ~vrC-iC~~~~~~~~-mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~   75 (98)
T 2lv9_A           28 VTRC-ICGFTHDDGY-MICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP   75 (98)
T ss_dssp             BCCC-TTSCCSCSSC-EEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred             CEEe-ECCCccCCCc-EEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence            3467 8877654333 33333 9999999998764332   237999974

>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=83.28  E-value=0.46  Score=32.16  Aligned_cols=43  Identities=35%  Similarity=0.751  Sum_probs=28.5

Q ss_pred             cccccccccccCCccEEe-CCCCccChhhHHHHHhcC----CCCCCccc
Q 021283          233 ECAICKENLLVGDKMQEL-PCKHTFHPPCLKPWLDEH----NSCPICRH  276 (314)
Q Consensus       233 ~C~ICLe~~~~~~~v~~L-PCgH~FH~~CI~~WL~~~----~tCPvCR~  276 (314)
                      .|.||...-.. +.++.- .|...||..|+.+=|...    -.||.|+.
T Consensus         2 ~C~vC~~~~~~-~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~   49 (51)
T 1f62_A            2 RCKVCRKKGED-DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCC-SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCCCCCCCCCC-CCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence            58899875322 233333 399999999997655432    26999964

>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*

Probab=82.55  E-value=0.3  Score=42.81  Aligned_cols=45  Identities=31%  Similarity=0.661  Sum_probs=32.0

Q ss_pred             CcccccccccccccCCccEEeC-CCCccChhhHHHHHhcC----CCCCCccccc
Q 021283          230 HDAECAICKENLLVGDKMQELP-CKHTFHPPCLKPWLDEH----NSCPICRHEL  278 (314)
Q Consensus       230 ~~~~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~WL~~~----~tCPvCR~~l  278 (314)
                      .+..|.||...   ++ +.... |...||..|+.+-|...    -.||.|+..-
T Consensus         6 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~   55 (207)
T 3u5n_A            6 NEDWCAVCQNG---GD-LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG   55 (207)
T ss_dssp             SCSSBTTTCCC---EE-EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred             CCCCCCCCCCC---Cc-eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence            45679999854   23 33333 88999999998876643    2799998754

>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}

Probab=81.31  E-value=0.56  Score=33.23  Aligned_cols=44  Identities=32%  Similarity=0.853  Sum_probs=30.9

Q ss_pred             CcccccccccccccCCccEEe-CCCCccChhhHHHHHhcC----CCCCCcccc
Q 021283          230 HDAECAICKENLLVGDKMQEL-PCKHTFHPPCLKPWLDEH----NSCPICRHE  277 (314)
Q Consensus       230 ~~~~C~ICLe~~~~~~~v~~L-PCgH~FH~~CI~~WL~~~----~tCPvCR~~  277 (314)
                      .+..|.||...   + .++.- .|...||..|+.+-+...    -.||.|+..
T Consensus        10 ~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~   58 (61)
T 2l5u_A           10 HQDYCEVCQQG---G-EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE   58 (61)
T ss_dssp             CCSSCTTTSCC---S-SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred             CCCCCccCCCC---C-cEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence            46789999873   2 33333 388999999999865432    279999753

>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A

Probab=80.98  E-value=0.44  Score=33.78  Aligned_cols=47  Identities=32%  Similarity=0.656  Sum_probs=31.7

Q ss_pred             CcccccccccccccCCccEEeCCCCccChhhHHHHHhcC----CCCCCcccccC
Q 021283          230 HDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEH----NSCPICRHELQ  279 (314)
Q Consensus       230 ~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~----~tCPvCR~~l~  279 (314)
                      .+..|.||...   ++.+.--.|...||..|+.+-|...    -.||.|+....
T Consensus         8 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~   58 (61)
T 1mm2_A            8 HMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL   58 (61)
T ss_dssp             SCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred             CCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchh
Confidence            46689999863   2322223388999999998755532    26999986543

>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3

Probab=80.80  E-value=0.98  Score=34.53  Aligned_cols=31  Identities=29%  Similarity=0.752  Sum_probs=21.6

Q ss_pred             CcccccccccccccCCccEEeC---CCCccChhhHHHH
Q 021283          230 HDAECAICKENLLVGDKMQELP---CKHTFHPPCLKPW  264 (314)
Q Consensus       230 ~~~~C~ICLe~~~~~~~v~~LP---CgH~FH~~CI~~W  264 (314)
                      .|..|.||--- ...+   .+|   |+-+||..|+.+-
T Consensus        14 ~D~~C~VC~~~-t~~~---l~pCRvC~RvfH~~CL~r~   47 (89)
T 1wil_A           14 NDEMCDVCEVW-TAES---LFPCRVCTRVFHDGCLRRM   47 (89)
T ss_dssp             CSCCCTTTCCC-CSSC---CSSCSSSSSCCCHHHHHHH
T ss_pred             CCcccCccccc-cccc---eeccccccccccHhhcccc
Confidence            46799998632 1112   244   7899999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	314
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	3e-17
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	2e-16
d3dplr1	88	g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S	3e-12
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	1e-11
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	9e-11
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	1e-10
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	4e-09
d1vyxa_	60	g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do	8e-09
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	1e-08
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	2e-08
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	3e-07
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	1e-06
d1v87a_	114	g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mou	1e-06
d1wima_	94	g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA016	2e-05
d1we9a_	64	g.50.1.2 (A:) PHD finger protein At5g26210 {Thale	6e-04
d1fp0a1	70	g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-	7e-04
d1f62a_	51	g.50.1.2 (A:) Williams-Beuren syndrome transcripti	0.002
d1mm2a_	61	g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens	0.002
d2ct7a1	73	g.44.1.4 (A:8-80) Ring finger protein 31 {Human (H	0.004

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 72.2 bits (177), Expect = 3e-17
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 231 DAECAICKENLLVGDKMQELP-CKHTFHPPCLKPWLDEHNSCPICRHEL 278
             ECA+C   L  G++ + LP C H FH  C+  WL  H++CP+CR  +
Sbjct: 5   GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 70.7 bits (173), Expect = 2e-16
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 233 ECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYES 287
            C IC E+    +    LPC H F   C+  W+ ++ +CP+C+  +++  H  ES
Sbjct: 7   RCPICLEDP--SNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVVHTIES 59

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (144), Expect = 3e-12
 Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 15/64 (23%)

Query: 231 DAECAICKENLL---------------VGDKMQELPCKHTFHPPCLKPWLDEHNSCPICR 275
              CAIC+ +++                   +    C H FH  C+  WL     CP+  
Sbjct: 21  VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 80

Query: 276 HELQ 279
            E +
Sbjct: 81  REWE 84

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.7 bits (139), Expect = 1e-11
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 8/70 (11%)

Query: 218 ITLTEEILDKL----GHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDE-HNSCP 272
           I +T+E  +           C IC EN      ++  PC H     CL  W +     CP
Sbjct: 6   IKVTQEQYELYCEMGSTFQLCKICAEND---KDVKIEPCGHLMCTSCLTSWQESEGQGCP 62

Query: 273 ICRHELQTDD 282
            CR E++  +
Sbjct: 63  FCRCEIKGTE 72

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (131), Expect = 9e-11
 Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 3/55 (5%)

Query: 231 DAECAICKENLLVGDKMQEL--PCKHTFHPPCLKPWLDE-HNSCPICRHELQTDD 282
           D  C  CK        ++ +   C HT    C+         +CP C   L+  +
Sbjct: 3   DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (129), Expect = 1e-10
 Identities = 14/51 (27%), Positives = 18/51 (35%), Gaps = 2/51 (3%)

Query: 233 ECAICKENLLVGDK-MQELPCKHTFHPPCLKPWLDEHN-SCPICRHELQTD 281
           EC +C E L + D       C +     C      + N  CP CR     D
Sbjct: 2   ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 52

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (119), Expect = 4e-09
 Identities = 16/57 (28%), Positives = 20/57 (35%), Gaps = 10/57 (17%)

Query: 222 EEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHEL 278
           EE    L     C  C+         + LPC HT    CL+        CPIC+   
Sbjct: 1   EEEFQFL----RCQQCQAEA---KCPKLLPCLHTLCSGCLEAS---GMQCPICQAPW 47

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

 Score = 49.1 bits (116), Expect = 8e-09
 Identities = 14/54 (25%), Positives = 15/54 (27%), Gaps = 4/54 (7%)

Query: 231 DAECAICKENL--LVGDKMQELPCKHTFHPPCLKPWLDEH--NSCPICRHELQT 280
              C IC E L                 H  CL  WL      +C IC     T
Sbjct: 6   VPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.1 bits (117), Expect = 1e-08
 Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 4/64 (6%)

Query: 220 LTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNS-CPICRHEL 278
           L  +          C IC+  L       E  CKH F   C+   L    S CP CR+  
Sbjct: 12  LAVDFPAHFVKSISCQICEHIL---ADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPC 68

Query: 279 QTDD 282
              D
Sbjct: 69  FPTD 72

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (116), Expect = 2e-08
 Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 6/68 (8%)

Query: 218 ITLTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHN---SCPIC 274
           +   + +++ +    EC IC E +    +     C H F   C+   L++      CP+C
Sbjct: 8   VEEVQNVINAMQKILECPICLELI---KEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLC 64

Query: 275 RHELQTDD 282
           ++++    
Sbjct: 65  KNDITKRS 72

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.7 bits (105), Expect = 3e-07
 Identities = 8/49 (16%), Positives = 18/49 (36%), Gaps = 2/49 (4%)

Query: 234 CAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDD 282
           CAI  +       +     +  F    L+ ++ +  + PI    L  ++
Sbjct: 3   CAISGKVPR--RPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEE 49

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (104), Expect = 1e-06
 Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 4/62 (6%)

Query: 221 TEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQT 280
           +   LD+L     C+ C   L   + +    C+H F   C+   +     CP+C      
Sbjct: 12  SRAALDRLEKLLRCSRCTNILR--EPVCLGGCEHIFCSNCVSDCI--GTGCPVCYTPAWI 67

Query: 281 DD 282
            D
Sbjct: 68  QD 69

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.6 bits (104), Expect = 1e-06
 Identities = 18/83 (21%), Positives = 25/83 (30%), Gaps = 26/83 (31%)

Query: 219 TLTEEILDKL------GHDAECAICKENLLVGDKMQE---------------LPCKHTFH 257
              E+++ K         + +C IC E L V     +                 C H FH
Sbjct: 7   GEPEQVIRKYTEELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFH 66

Query: 258 PPCLKPWL-----DEHNSCPICR 275
             CL         D    CP C+
Sbjct: 67  LLCLLAMYCNGNKDGSLQCPSCK 89

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (94), Expect = 2e-05
 Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 8/53 (15%)

Query: 231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHN--------SCPICR 275
            + C +C     V        C+  F   CLK +++           SCP   
Sbjct: 5   SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA 57

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 35.4 bits (81), Expect = 6e-04
 Identities = 12/53 (22%), Positives = 17/53 (32%), Gaps = 6/53 (11%)

Query: 229 GHDAECAICKENLLVGDKM-QELPCKHTFHPPCLKPWLDEHNS-----CPICR 275
           G   +C  C E+    +       C+  FH  C+K             CP C 
Sbjct: 4   GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCS 56

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Length = 70

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (81), Expect = 7e-04
 Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 11/64 (17%)

Query: 229 GHDAECAICKE--NLLVGDKMQELPCKHTFHPPCLKPWLDEHNS----CPICRHELQTDD 282
                C +C++  +L++ ++     C+  FH  C  P L +       C +C       +
Sbjct: 5   DSATICRVCQKPGDLVMCNQ-----CEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLKE 59

Query: 283 HAYE 286
              +
Sbjct: 60  EDVD 63

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.8 bits (77), Expect = 0.002
 Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 4/49 (8%)

Query: 232 AECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNS----CPICRH 276
           A C +C++       +    C   FH  CL+P L E       CP C+ 
Sbjct: 1   ARCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.8 bits (77), Expect = 0.002
 Identities = 18/61 (29%), Positives = 23/61 (37%), Gaps = 11/61 (18%)

Query: 225 LDKLGHDAECAICKE--NLLVGDKMQELPCKHTFHPPCLKPWLDEHNS----CPICRHEL 278
           L    H   C +CK+   LL  D      C  ++H  CL P L E  +    CP C    
Sbjct: 3   LGSDHHMEFCRVCKDGGELLCCDT-----CPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57

Query: 279 Q 279
            
Sbjct: 58  L 58

>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: IBR domain
domain: Ring finger protein 31
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.1 bits (75), Expect = 0.004
 Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 12/74 (16%)

Query: 220 LTEEILDKLGHDAECAICKENLLVGD---KMQELPCKHTFHPPCLKPWLDEHNSCPICRH 276
           LTE +L +      CA C    +      +     C  TF   C + W ++H     C  
Sbjct: 7   LTEGVLMRDPKFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQHRGRS-CED 65

Query: 277 ELQTDDHAYESWKE 290
                   +++WK 
Sbjct: 66  --------FQNWKR 71

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	314
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.63
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.42
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.39
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	99.37
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.36
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.36
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	99.35
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.23
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.22
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.21
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.12
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	99.08
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	99.06
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	99.05
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.96
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.95
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.44
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	91.64
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	89.54
d1fp0a1	70	Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo	88.86
d1mm2a_	61	Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606	82.97

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.63  E-value=6.8e-17  Score=114.17  Aligned_cols=51  Identities=39%  Similarity=0.991  Sum_probs=46.4

Q ss_pred             CCcccccccccccccCCccEEeC-CCCccChhhHHHHHhcCCCCCCcccccC
Q 021283          229 GHDAECAICKENLLVGDKMQELP-CKHTFHPPCLKPWLDEHNSCPICRHELQ  279 (314)
Q Consensus       229 ~~~~~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~WL~~~~tCPvCR~~l~  279 (314)
                      .++.+|+||++.|..++.++.+| |+|.||..||.+||+.+.+||+||.+|.
T Consensus         3 ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~   54 (55)
T d1iyma_           3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCCcCCCCCCEeE
Confidence            45678999999999888888886 9999999999999999999999999874

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.42  E-value=2.7e-14  Score=104.44  Aligned_cols=47  Identities=30%  Similarity=0.876  Sum_probs=41.9

Q ss_pred             cccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccC
Q 021283          231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQ  279 (314)
Q Consensus       231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~  279 (314)
                      ...|+||++.+.  +.++.+||||.||..||..||+.+.+||+||.++.
T Consensus         5 ~d~C~IC~~~~~--~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~i~   51 (68)
T d1chca_           5 AERCPICLEDPS--NYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE   51 (68)
T ss_dssp             CCCCSSCCSCCC--SCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred             CCCCccCCcCcc--CCcEEeCCCCcCcHHHHHHHHHhCCcCCCCCcchH
Confidence            457999999984  45677899999999999999999999999999884

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=5.7e-14  Score=97.63  Aligned_cols=48  Identities=25%  Similarity=0.565  Sum_probs=40.5

Q ss_pred             cccccccccccCCc-cEEeCCCCccChhhHHHHHhc-CCCCCCcccccCC
Q 021283          233 ECAICKENLLVGDK-MQELPCKHTFHPPCLKPWLDE-HNSCPICRHELQT  280 (314)
Q Consensus       233 ~C~ICLe~~~~~~~-v~~LPCgH~FH~~CI~~WL~~-~~tCPvCR~~l~~  280 (314)
                      +|+||++.|..++. +..++|||.||..||.+|+.. +.+||+||.++..
T Consensus         2 eCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence            79999999976554 445689999999999999985 4579999999864

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.37  E-value=1e-13  Score=110.49  Aligned_cols=53  Identities=28%  Similarity=0.564  Sum_probs=41.8

Q ss_pred             CcccccccccccccC---------------CccEEeCCCCccChhhHHHHHhcC-----CCCCCcccccCCCC
Q 021283          230 HDAECAICKENLLVG---------------DKMQELPCKHTFHPPCLKPWLDEH-----NSCPICRHELQTDD  282 (314)
Q Consensus       230 ~~~~C~ICLe~~~~~---------------~~v~~LPCgH~FH~~CI~~WL~~~-----~tCPvCR~~l~~~d  282 (314)
                      .+..|+||++.|...               ..+..++|+|+||..||..||...     .+||+||..+..+.
T Consensus        24 ~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~~~   96 (114)
T d1v87a_          24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKT   96 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCS
T ss_pred             ccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhccCc
Confidence            356899999988531               235667899999999999999843     37999999886554

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.7e-13  Score=99.43  Aligned_cols=53  Identities=25%  Similarity=0.557  Sum_probs=42.1

Q ss_pred             CcccccccccccccC-C-ccEEeCCCCccChhhHHHHHhc-CCCCCCcccccCCCC
Q 021283          230 HDAECAICKENLLVG-D-KMQELPCKHTFHPPCLKPWLDE-HNSCPICRHELQTDD  282 (314)
Q Consensus       230 ~~~~C~ICLe~~~~~-~-~v~~LPCgH~FH~~CI~~WL~~-~~tCPvCR~~l~~~d  282 (314)
                      ++..||||++.+..+ + .++.++|||.||..||..||.. +.+||+||.++...+
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~~   57 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN   57 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCccccc
Confidence            467999999986433 2 3456789999999999999964 568999999986554

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2.4e-13  Score=102.30  Aligned_cols=49  Identities=33%  Similarity=0.815  Sum_probs=41.9

Q ss_pred             cccccccccccccCCccEEeCCCCccChhhHHHHHhc-CCCCCCcccccCCCC
Q 021283          231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDE-HNSCPICRHELQTDD  282 (314)
Q Consensus       231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~-~~tCPvCR~~l~~~d  282 (314)
                      ...|+||++.+   ..++.+||||.||..||..||.. +.+||+||..|...+
T Consensus        23 ~~~C~IC~~~~---~~~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~   72 (79)
T d1fbva4          23 FQLCKICAEND---KDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE   72 (79)
T ss_dssp             TTBCTTTSSSB---CCEECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCCC
T ss_pred             CCCCccCCCcC---CCeEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCCc
Confidence            35799999988   35788999999999999999984 578999999997544

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.7e-13  Score=104.99  Aligned_cols=50  Identities=28%  Similarity=0.664  Sum_probs=41.9

Q ss_pred             CcccccccccccccCC---------------ccEEeCCCCccChhhHHHHHhcCCCCCCcccccC
Q 021283          230 HDAECAICKENLLVGD---------------KMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQ  279 (314)
Q Consensus       230 ~~~~C~ICLe~~~~~~---------------~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~  279 (314)
                      .+..|+||++.+....               .+..++|+|.||..||.+||+.+.+||+||.++.
T Consensus        20 ~~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~   84 (88)
T d3dplr1          20 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE   84 (88)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCCcCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHHCCcCCCCCCccc
Confidence            3567999998875422               3577889999999999999999999999999874

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=1.5e-12  Score=102.11  Aligned_cols=52  Identities=25%  Similarity=0.646  Sum_probs=43.0

Q ss_pred             CCcccccccccccccCCccEEeCCCCccChhhHHHHHhcC---CCCCCcccccCCCCc
Q 021283          229 GHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEH---NSCPICRHELQTDDH  283 (314)
Q Consensus       229 ~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~---~tCPvCR~~l~~~d~  283 (314)
                      .+...|+||++.|.   .++.+||||.||..||..|+...   ..||+||.++...+.
T Consensus        19 ~~~l~CpIC~~~~~---~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~l   73 (103)
T d1jm7a_          19 QKILECPICLELIK---EPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL   73 (103)
T ss_dssp             HHHTSCSSSCCCCS---SCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTC
T ss_pred             ccCcCCCccCchhC---CeEEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhhC
Confidence            34578999999984   35678999999999999999764   389999999875553

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.22  E-value=9.6e-13  Score=92.60  Aligned_cols=47  Identities=19%  Similarity=0.355  Sum_probs=41.1

Q ss_pred             cccccccccccCCccEEeC-CCCccChhhHHHHHhcCCCCCCcccccCCCC
Q 021283          233 ECAICKENLLVGDKMQELP-CKHTFHPPCLKPWLDEHNSCPICRHELQTDD  282 (314)
Q Consensus       233 ~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d  282 (314)
                      .|+||++.+.   .++.++ |||.||..||.+||..+.+||+||.++..++
T Consensus         2 ~C~Ic~~~~~---~Pv~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l~~~d   49 (56)
T d2baya1           2 LCAISGKVPR---RPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEE   49 (56)
T ss_dssp             CCTTTCSCCS---SEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGG
T ss_pred             CCccCCchHH---hcCccCCCCCcccHHHHHHHHhhccCCCccCCcCCHHh
Confidence            6999999984   466665 9999999999999999999999999987554

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.21  E-value=1.2e-12  Score=100.15  Aligned_cols=51  Identities=31%  Similarity=0.584  Sum_probs=43.2

Q ss_pred             cccccccccccccCCccEEeCCCCccChhhHHHHHhc-CCCCCCcccccCCCCcc
Q 021283          231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDE-HNSCPICRHELQTDDHA  284 (314)
Q Consensus       231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~-~~tCPvCR~~l~~~d~~  284 (314)
                      ...|+||++.+.   .++.++|||.||..||..|++. +..||+||.++...+..
T Consensus        23 ~l~C~IC~~~~~---~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~l~   74 (86)
T d1rmda2          23 SISCQICEHILA---DPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLE   74 (86)
T ss_dssp             HTBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCB
T ss_pred             CcCCccCCcchh---cceecCCCChhhHHHHHHHHhhCCCcCcccCCCCChhhcc
Confidence            468999999984   4788999999999999999974 56899999998765544

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=3.9e-12  Score=89.65  Aligned_cols=46  Identities=28%  Similarity=0.579  Sum_probs=38.7

Q ss_pred             cccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCCC
Q 021283          231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDD  282 (314)
Q Consensus       231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d  282 (314)
                      ...|+||++.+.   .++.+||||.||..||..|   +.+||+||.++....
T Consensus         6 ~l~C~IC~~~~~---~p~~lpCgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~   51 (56)
T d1bora_           6 FLRCQQCQAEAK---CPKLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGA   51 (56)
T ss_dssp             CSSCSSSCSSCB---CCSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred             CCCCcccCcccC---CCEEecCCCHHhHHHHHcC---CCcCcCCCCcccCCC
Confidence            469999999984   4677999999999999876   668999999997543

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2e-11  Score=94.56  Aligned_cols=54  Identities=20%  Similarity=0.487  Sum_probs=42.3

Q ss_pred             CcccccccccccccCCccEEeCCCCccChhhHHHHHhcCCCCCCcccccCCCCcchhh
Q 021283          230 HDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYES  287 (314)
Q Consensus       230 ~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~~tCPvCR~~l~~~d~~~~~  287 (314)
                      +...|+||++.|.  +.+...+|||.||..||..|+.  ..||+||.++...+..+..
T Consensus        21 ~~l~C~IC~~~~~--~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~l~~n~   74 (97)
T d1jm7b_          21 KLLRCSRCTNILR--EPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLKINR   74 (97)
T ss_dssp             HTTSCSSSCSCCS--SCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCCCCH
T ss_pred             hcCCCccCCchhh--cCceeCCCCCchhHHHHHHHHh--ccccccCCcCchhhCcccH
Confidence            4579999999994  3344457999999999999984  4699999998766654433

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.06  E-value=4.9e-11  Score=89.23  Aligned_cols=54  Identities=15%  Similarity=0.068  Sum_probs=44.8

Q ss_pred             CCcccccccccccccCCccEEeCCCCccChhhHHHHHhc-CCCCCCcccccCCCCcch
Q 021283          229 GHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDE-HNSCPICRHELQTDDHAY  285 (314)
Q Consensus       229 ~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~-~~tCPvCR~~l~~~d~~~  285 (314)
                      .++..|+||++.|.   .++.++|||.||..||..||.. +.+||+||.++...+..+
T Consensus         5 P~~l~CpIc~~l~~---dPv~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~l~p   59 (80)
T d2c2la2           5 PDYLCGKISFELMR---EPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIP   59 (80)
T ss_dssp             CSTTBCTTTCSBCS---SEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEE
T ss_pred             CccccCcCcCchhh---hhcccCCcCeecHHHHHHHHhcCCccCCCcccccccccccc
Confidence            45789999999994   4678999999999999999975 558999999987655443

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.05  E-value=6.8e-11  Score=87.95  Aligned_cols=54  Identities=19%  Similarity=0.349  Sum_probs=45.3

Q ss_pred             CCcccccccccccccCCccEEeCCCCccChhhHHHHHhcC-CCCCCcccccCCCCcch
Q 021283          229 GHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEH-NSCPICRHELQTDDHAY  285 (314)
Q Consensus       229 ~~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~~-~tCPvCR~~l~~~d~~~  285 (314)
                      .++..|+||++.|.   .++.++|||.||+.||..|+..+ ..||.|+.++...+...
T Consensus         6 P~~l~CpIc~~~m~---dPV~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~l~p   60 (78)
T d1t1ha_           6 PEYFRCPISLELMK---DPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTP   60 (78)
T ss_dssp             SSSSSCTTTSCCCS---SEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEE
T ss_pred             CccCCCcCcCchhh---CceEccCCCcchHHHHHHHHHHCCCCCCcccccCCcccccc
Confidence            35789999999994   46789999999999999999864 57999999998765443

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.96  E-value=1.6e-10  Score=81.83  Aligned_cols=49  Identities=29%  Similarity=0.543  Sum_probs=37.6

Q ss_pred             CCcccccccccccccCCccEEeC-----CCCccChhhHHHHHh--cCCCCCCcccccCC
Q 021283          229 GHDAECAICKENLLVGDKMQELP-----CKHTFHPPCLKPWLD--EHNSCPICRHELQT  280 (314)
Q Consensus       229 ~~~~~C~ICLe~~~~~~~v~~LP-----CgH~FH~~CI~~WL~--~~~tCPvCR~~l~~  280 (314)
                      .+...|+||++.+...   ...|     |+|.||..||..|+.  .+.+||+||+++..
T Consensus         4 ed~~~C~IC~~~~~~~---~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~~   59 (60)
T d1vyxa_           4 EDVPVCWICNEELGNE---RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT   59 (60)
T ss_dssp             CSCCEETTTTEECSCC---CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred             CCCCCCccCCccCCCc---eeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeeec
Confidence            3467899999987432   2234     459999999999996  45689999998754

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=4.7e-10  Score=87.24  Aligned_cols=61  Identities=15%  Similarity=0.070  Sum_probs=49.4

Q ss_pred             CCcccccccccccccCCccEEeCCC-CccChhhHHHHHhcCCCCCCcccccCCCCcchhhHHHHH
Q 021283          229 GHDAECAICKENLLVGDKMQELPCK-HTFHPPCLKPWLDEHNSCPICRHELQTDDHAYESWKERE  292 (314)
Q Consensus       229 ~~~~~C~ICLe~~~~~~~v~~LPCg-H~FH~~CI~~WL~~~~tCPvCR~~l~~~d~~~~~~~~r~  292 (314)
                      .+++.||||++.|   ..++.+||+ |.|++.||..||..+.+||+||.+|..++.......+..
T Consensus        20 P~~f~CPI~~~lm---~dPV~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~~~L~pN~~Lr~~   81 (98)
T d1wgma_          20 CDEFLDPIMSTLM---CDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEK   81 (98)
T ss_dssp             CTTTBCTTTCSBC---SSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHH
T ss_pred             cHHhCCcCchhHH---HHHHhcccccchhhHHHHHHHHHhcCCcccccccccchhhcchHHHHHH
Confidence            3478999999999   458889865 589999999999999999999999987665544444433

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=2.8e-08  Score=75.61  Aligned_cols=47  Identities=23%  Similarity=0.485  Sum_probs=36.5

Q ss_pred             CcccccccccccccCCccEEeCCCCccChhhHHHHHhc-----C---CCCCCccc
Q 021283          230 HDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDE-----H---NSCPICRH  276 (314)
Q Consensus       230 ~~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~-----~---~tCPvCR~  276 (314)
                      ...+|+||++.+...+.+..++|+|.||..||..|+..     .   -.||.|+.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C   58 (94)
T d1wima_           4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAAC   58 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTC
T ss_pred             CCCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCC
Confidence            45799999999865455555679999999999999872     1   15998654

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.64  E-value=0.03  Score=36.61  Aligned_cols=43  Identities=35%  Similarity=0.770  Sum_probs=30.1

Q ss_pred             cccccccccccCCccEEeC-CCCccChhhHHHHHhcCC----CCCCccc
Q 021283          233 ECAICKENLLVGDKMQELP-CKHTFHPPCLKPWLDEHN----SCPICRH  276 (314)
Q Consensus       233 ~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~WL~~~~----tCPvCR~  276 (314)
                      .|.||...-.. +.++.-. |...||..|+.+-+....    .||.||.
T Consensus         2 ~C~vC~~~~~~-~~~i~Cd~C~~~~H~~C~~p~~~~~p~~~W~C~~C~~   49 (51)
T d1f62a_           2 RCKVCRKKGED-DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCC-SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCcCcCCCCCC-CCEEEcCCCCCCCCCCCCCCCCCcCCCCCEECcCCcC
Confidence            68899765433 3343333 999999999998765432    6999974

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.54  E-value=0.034  Score=38.07  Aligned_cols=48  Identities=23%  Similarity=0.539  Sum_probs=34.3

Q ss_pred             CcccccccccccccCCccEEeC-CCCccChhhHHHHHh-----cCCCCCCcccc
Q 021283          230 HDAECAICKENLLVGDKMQELP-CKHTFHPPCLKPWLD-----EHNSCPICRHE  277 (314)
Q Consensus       230 ~~~~C~ICLe~~~~~~~v~~LP-CgH~FH~~CI~~WL~-----~~~tCPvCR~~  277 (314)
                      ....|.||......++.++.-. |+..||..|+..-..     ..-.||.|+..
T Consensus         5 ~~~~C~~C~~~~~~~~~~I~Cd~C~~w~H~~C~~~~~~~~~~~~~w~C~~C~~~   58 (64)
T d1we9a_           5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK   58 (64)
T ss_dssp             SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred             CCCcCcCcCCCCCCCCCEEEcCCCCccCCcccCCcChHHCCCCCeEECcCCcCc
Confidence            4568999998876655555555 999999999853211     23479999764

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.86  E-value=0.068  Score=37.32  Aligned_cols=48  Identities=27%  Similarity=0.672  Sum_probs=31.8

Q ss_pred             cccccccccccccCCccEEe-CCCCccChhhHHHHHhcCC----CCCCcccccCCCC
Q 021283          231 DAECAICKENLLVGDKMQEL-PCKHTFHPPCLKPWLDEHN----SCPICRHELQTDD  282 (314)
Q Consensus       231 ~~~C~ICLe~~~~~~~v~~L-PCgH~FH~~CI~~WL~~~~----tCPvCR~~l~~~d  282 (314)
                      ...|.||...   ++ ++.- .|...||..|+.+.+....    .||.|+..-...+
T Consensus         7 c~~C~~C~~~---~~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~~~~   59 (70)
T d1fp0a1           7 ATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLKE   59 (70)
T ss_dssp             SSCCSSSCSS---SC-CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCSSCC
T ss_pred             CCCCCCCCCc---CE-EEECCCCChhhccccCCCCcCcCCCCCEECcCCcCcCccCc
Confidence            3456677543   33 3333 3999999999998876433    6999976554443

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.97  E-value=0.15  Score=34.40  Aligned_cols=46  Identities=30%  Similarity=0.646  Sum_probs=30.8

Q ss_pred             cccccccccccccCCccEEeCCCCccChhhHHHHHhc----CCCCCCcccccC
Q 021283          231 DAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDE----HNSCPICRHELQ  279 (314)
Q Consensus       231 ~~~C~ICLe~~~~~~~v~~LPCgH~FH~~CI~~WL~~----~~tCPvCR~~l~  279 (314)
                      +..|.||.+.   ++.+.-=.|.-.||..|+...+..    .-.||.|+....
T Consensus         9 ~~~C~~C~~~---g~lv~Cd~C~~~~H~~C~~~~~~~~~~~~W~C~~C~~~~~   58 (61)
T d1mm2a_           9 MEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL   58 (61)
T ss_dssp             CSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred             cCCCcCCCCC---CeEEEeCCCCccCchhhcCCCcCcCCCCcEECCCCcCccc
Confidence            4579999753   332222348999999999866553    237999986543