Citrus Sinensis ID: 021288


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310----
MLNWHFFFTAMLFVYGRILSQRLVNTVTSDKFLYQFVSSLIKYHMVICYFLYISGFVWFILTLKKKMYKYQFSQYAWTHMILIVVFAQSSFTVASIFEGIFWFLLPASLIVINDIAAYIFGFFFGRTPLIKLSPKKTWEGFIGASVATITSAFVLANIMGRFQWLTCPRKDLATGWLHCDPGPLFKPESFPLPGWLPWKEITILPVQWHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFIVPQSFRVEMILEQILTALTYEEQKALYMKLGEILQERLFGQS
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccc
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEccccccHHHHHHHHHHHHHHHHHHHHHHHcccEEEccccccccccccccccccEEcccccccccccccEEEEcHHHHHHHHHHHHHHHHccccHHHHHHHHHHEEEccccccccccccccccccHHHHHHHHHHHHHHHHEccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccc
MLNWHFFFTAMLFVYGRILSQRLVNTVTSDKFLYQFVSSLIKYHMVICYFLYISGFVWFILTLKKKMYKYQFSQYAWTHMILIVVFAQSSFTVASIFEGIFWFLLPASLIVINDIAAYIFGfffgrtpliklspkktwegFIGASVATITSAFVLANIMGRfqwltcprkdlatgwlhcdpgplfkpesfplpgwlpwkeitilPVQWHALCLGLFAsiiapfggffasgFKRAFKikdfgdsipghggitdrmDCQMVMAVFAYIYhqsfivpqSFRVEMILEQILTALTYEEQKALYMKLGEILQERLFGQS
MLNWHFFFTAMLFVYGRILSQRLVNTVTSDKFLYQFVSSLIKYHMVICYFLYISGFVWFILTLKKKMYKYQFSQYAWTHMILIVVFAQSSFTVASIFEGIFWFLLPASLIVINDIAAYIFGFFFGRTPLIKLSPKKTWEGFIGASVATITSAFVLANIMGRFQWLTCPRKDLATGWLHCDPGPLFKPESFPLPGWLPWKEITILPVQWHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFIVPQSFRVEMILEQILTALTYEEQKALYMKLGEILQERLFGQS
MLNWHFFFTAMLFVYGRILSQRLVNTVTSDKFLYQFVSSLIKYHMVICYFLYISGFVWFILTLKKKMYKYQFSQYAWTHMILIVVFAQSSFTVASIFEGIFWFLLPASLIVINDIAAYIFGFFFGRTPLIKLSPKKTWEGFIGASVATITSAFVLANIMGRFQWLTCPRKDLATGWLHCDPGPLFKPESFPLPGWLPWKEITILPVQWHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFIVPQSFRVEMILEQILTALTYEEQKALYMKLGEILQERLFGQS
**NWHFFFTAMLFVYGRILSQRLVNTVTSDKFLYQFVSSLIKYHMVICYFLYISGFVWFILTLKKKMYKYQFSQYAWTHMILIVVFAQSSFTVASIFEGIFWFLLPASLIVINDIAAYIFGFFFGRTPLIKLSPKKTWEGFIGASVATITSAFVLANIMGRFQWLTCPRKDLATGWLHCDPGPLFKPESFPLPGWLPWKEITILPVQWHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFIVPQSFRVEMILEQILTALTYEEQKALYMKLGEILQERL****
MLNWHFFFTAMLFVYGRILSQRLVNTVTSDKFLYQFVSSLIKYHMVICYFLYISGFVWFILTLKKKMYKYQFSQYAWTHMILIVVFAQSSFTVASIFEGIFWFLLPASLIVINDIAAYIFGFFFGRTPLIKLSPKKTWEGFIGASVATITSAFVLANIMGRFQWLTCPRKDLATGWLHCDPGPLFKPESFPLPGWLPWKEITILPVQWHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFIVPQSFRVEMILEQILTALTYEEQKALYMKLGEIL********
MLNWHFFFTAMLFVYGRILSQRLVNTVTSDKFLYQFVSSLIKYHMVICYFLYISGFVWFILTLKKKMYKYQFSQYAWTHMILIVVFAQSSFTVASIFEGIFWFLLPASLIVINDIAAYIFGFFFGRTPLIKLSPKKTWEGFIGASVATITSAFVLANIMGRFQWLTCPRKDLATGWLHCDPGPLFKPESFPLPGWLPWKEITILPVQWHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFIVPQSFRVEMILEQILTALTYEEQKALYMKLGEILQERLFGQS
MLNWHFFFTAMLFVYGRILSQRLVNTVTSDKFLYQFVSSLIKYHMVICYFLYISGFVWFILTLKKKMYKYQFSQYAWTHMILIVVFAQSSFTVASIFEGIFWFLLPASLIVINDIAAYIFGFFFGRTPLIKLSPKKTWEGFIGASVATITSAFVLANIMGRFQWLTCPRKDLATGWLHCDPGPLFKPESFPLPGWLPWKEITILPVQWHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFIVPQSFRVEMILEQILTALTYEEQKALYMKLGEILQERL****
oooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooo
iiiHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooo
iiiHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLNWHFFFTAMLFVYGRILSQRLVNTVTSDKFLYQFVSSLIKYHMVICYFLYISGFVWFILTLKKKMYKYQFSQYAWTHMILIVVFAQSSFTVASIFEGIFWFLLPASLIVINDIAAYIFGFFFGRTPLIKLSPKKTWEGFIGASVATITSAFVLANIMGRFQWLTCPRKDLATGWLHCDPGPLFKPESFPLPGWLPWKEITILPVQWHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFIVPQSFRVEMILEQILTALTYEEQKALYMKLGEILQERLFGQS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query314 2.2.26 [Sep-21-2011]
O04928421 Phosphatidate cytidylyltr no no 0.984 0.733 0.833 1e-153
O04940424 Phosphatidate cytidylyltr N/A no 1.0 0.740 0.830 1e-152
Q92903461 Phosphatidate cytidylyltr yes no 0.958 0.652 0.450 3e-73
P98191461 Phosphatidate cytidylyltr yes no 0.958 0.652 0.450 5e-73
O35052461 Phosphatidate cytidylyltr yes no 0.958 0.652 0.450 5e-73
Q9P381439 Putative phosphatidate cy yes no 0.964 0.690 0.429 4e-71
Q99L43444 Phosphatidate cytidylyltr no no 0.958 0.677 0.431 6e-70
A0JNC1445 Phosphatidate cytidylyltr no no 0.958 0.676 0.431 9e-70
O95674445 Phosphatidate cytidylyltr no no 0.958 0.676 0.431 4e-69
Q91XU8443 Phosphatidate cytidylyltr no no 0.955 0.677 0.431 3e-68
>sp|O04928|CDS1_ARATH Phosphatidate cytidylyltransferase OS=Arabidopsis thaliana GN=CDS1 PE=2 SV=1 Back     alignment and function desciption
 Score =  542 bits (1397), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 261/313 (83%), Positives = 284/313 (90%), Gaps = 4/313 (1%)

Query: 2   LNWHFFFTAMLFVYGRILSQRLVNTVTSDKFLYQFVSSLIKYHMVICYFLYISGFVWFIL 61
           LNWHFFFTAMLFVYGRILSQRL NT+T+D+F Y+ VS LIKYHM ICY LYI GF+WFIL
Sbjct: 108 LNWHFFFTAMLFVYGRILSQRLANTMTADQFFYRLVSGLIKYHMAICYLLYIIGFMWFIL 167

Query: 62  TLKKKMYKYQFSQYAWTHMILIVVFAQSSFTVASIFEGIFWFLLPASLIVINDIAAYIFG 121
           TLKKKMYKYQF QYAWTHMILIVVF QSSFTVA+IFEGIFWFLLPASLI+INDI AYIFG
Sbjct: 168 TLKKKMYKYQFGQYAWTHMILIVVFTQSSFTVANIFEGIFWFLLPASLIIINDIFAYIFG 227

Query: 122 FFFGRTPLIKLSPKKTWEGFIGASVATITSAFVLANIMGRFQWLTCPRKDLATGWLHCDP 181
           FFFGRTPLIKLSPKKTWEGFIGASV TI SAFVLANI+GRF WLTCPR+DL+TGWL CD 
Sbjct: 228 FFFGRTPLIKLSPKKTWEGFIGASVTTIISAFVLANILGRFPWLTCPRQDLSTGWLQCDA 287

Query: 182 GPLFKPESFPLPGWL----PWKEITILPVQWHALCLGLFASIIAPFGGFFASGFKRAFKI 237
            PLFKPE F LP W+    PWKE+TILPVQWHALCLGLFASIIAPFGGFFASGFKRAFKI
Sbjct: 288 DPLFKPEPFALPAWIPEWFPWKEMTILPVQWHALCLGLFASIIAPFGGFFASGFKRAFKI 347

Query: 238 KDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFIVPQSFRVEMILEQILTALTYEEQKA 297
           KDFGDSIPGHGGITDRMDCQMVMAVFAYIY QSFIV QS  V+ IL+QILT LT+EEQ+A
Sbjct: 348 KDFGDSIPGHGGITDRMDCQMVMAVFAYIYLQSFIVSQSVSVDKILDQILTNLTFEEQQA 407

Query: 298 LYMKLGEILQERL 310
           L++KLG++L+++L
Sbjct: 408 LFVKLGQMLKDKL 420




May be involved in the synthesis of minor phospholipids and in modulation of IP3-mediated signal transduction.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 4EC: 1
>sp|O04940|CDS1_SOLTU Phosphatidate cytidylyltransferase OS=Solanum tuberosum GN=CDS1 PE=2 SV=1 Back     alignment and function description
>sp|Q92903|CDS1_HUMAN Phosphatidate cytidylyltransferase 1 OS=Homo sapiens GN=CDS1 PE=2 SV=2 Back     alignment and function description
>sp|P98191|CDS1_MOUSE Phosphatidate cytidylyltransferase 1 OS=Mus musculus GN=Cds1 PE=2 SV=2 Back     alignment and function description
>sp|O35052|CDS1_RAT Phosphatidate cytidylyltransferase 1 OS=Rattus norvegicus GN=Cds1 PE=1 SV=2 Back     alignment and function description
>sp|Q9P381|CDSH_SCHPO Putative phosphatidate cytidylyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC13A2.03 PE=1 SV=1 Back     alignment and function description
>sp|Q99L43|CDS2_MOUSE Phosphatidate cytidylyltransferase 2 OS=Mus musculus GN=Cds2 PE=1 SV=1 Back     alignment and function description
>sp|A0JNC1|CDS2_BOVIN Phosphatidate cytidylyltransferase 2 OS=Bos taurus GN=CDS2 PE=1 SV=1 Back     alignment and function description
>sp|O95674|CDS2_HUMAN Phosphatidate cytidylyltransferase 2 OS=Homo sapiens GN=CDS2 PE=1 SV=1 Back     alignment and function description
>sp|Q91XU8|CDS2_RAT Phosphatidate cytidylyltransferase 2 OS=Rattus norvegicus GN=Cds2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query314
356576511 424 PREDICTED: phosphatidate cytidylyltransf 1.0 0.740 0.855 1e-159
255554719 423 phosphatidate cytidylyltransferase, puta 1.0 0.742 0.861 1e-159
449434016 422 PREDICTED: phosphatidate cytidylyltransf 0.993 0.739 0.851 1e-157
357447853 426 Phosphatidate cytidylyltransferase [Medi 0.980 0.723 0.858 1e-157
356535384 424 PREDICTED: phosphatidate cytidylyltransf 0.980 0.726 0.865 1e-157
297799782 423 hypothetical protein ARALYDRAFT_492631 [ 0.996 0.739 0.845 1e-157
15235611 423 cytidinediphosphate diacylglycerol synth 0.996 0.739 0.839 1e-155
79325225 447 cytidinediphosphate diacylglycerol synth 0.996 0.700 0.839 1e-155
42572989365 cytidinediphosphate diacylglycerol synth 0.996 0.857 0.839 1e-155
224118188 422 predicted protein [Populus trichocarpa] 0.984 0.732 0.843 1e-154
>gi|356576511|ref|XP_003556374.1| PREDICTED: phosphatidate cytidylyltransferase-like [Glycine max] Back     alignment and taxonomy information
 Score =  567 bits (1462), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 272/318 (85%), Positives = 295/318 (92%), Gaps = 4/318 (1%)

Query: 1   MLNWHFFFTAMLFVYGRILSQRLVNTVTSDKFLYQFVSSLIKYHMVICYFLYISGFVWFI 60
           +LNWHFFFTAMLFVYGRILSQRLVNTVTSD  LY+ VS+LIKYHMVICY LYI+GF+WFI
Sbjct: 107 LLNWHFFFTAMLFVYGRILSQRLVNTVTSDMVLYRLVSNLIKYHMVICYSLYIAGFMWFI 166

Query: 61  LTLKKKMYKYQFSQYAWTHMILIVVFAQSSFTVASIFEGIFWFLLPASLIVINDIAAYIF 120
           LTLKKKMYKYQF QYAWTHMILIVVF QSSFTVASIFEGIFWFLLPA+LIVINDIAAYIF
Sbjct: 167 LTLKKKMYKYQFGQYAWTHMILIVVFGQSSFTVASIFEGIFWFLLPATLIVINDIAAYIF 226

Query: 121 GFFFGRTPLIKLSPKKTWEGFIGASVATITSAFVLANIMGRFQWLTCPRKDLATGWLHCD 180
           GFFFGRTPLIKLSPKKTWEGFIGASV TI SAF+LANIMGR QWLTCPRKDL+TGWLHCD
Sbjct: 227 GFFFGRTPLIKLSPKKTWEGFIGASVTTIISAFMLANIMGRSQWLTCPRKDLSTGWLHCD 286

Query: 181 PGPLFKPESFPLPGWLP----WKEITILPVQWHALCLGLFASIIAPFGGFFASGFKRAFK 236
           PGPLFKPES+PL GW+     WKEI+ILP+QWH+LCLGLFASIIAPFGGFFASGFKRAFK
Sbjct: 287 PGPLFKPESYPLQGWISHWFAWKEISILPIQWHSLCLGLFASIIAPFGGFFASGFKRAFK 346

Query: 237 IKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFIVPQSFRVEMILEQILTALTYEEQK 296
           IKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSF+VPQ+  VEMIL+QIL  LT++EQ+
Sbjct: 347 IKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFVVPQTLSVEMILDQILINLTFDEQE 406

Query: 297 ALYMKLGEILQERLFGQS 314
           ALY +LGEILQ+ +  +S
Sbjct: 407 ALYWRLGEILQQGITRKS 424




Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554719|ref|XP_002518397.1| phosphatidate cytidylyltransferase, putative [Ricinus communis] gi|223542242|gb|EEF43784.1| phosphatidate cytidylyltransferase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449434016|ref|XP_004134792.1| PREDICTED: phosphatidate cytidylyltransferase-like [Cucumis sativus] gi|449516305|ref|XP_004165187.1| PREDICTED: phosphatidate cytidylyltransferase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357447853|ref|XP_003594202.1| Phosphatidate cytidylyltransferase [Medicago truncatula] gi|87241162|gb|ABD33020.1| Phosphatidate cytidylyltransferase [Medicago truncatula] gi|355483250|gb|AES64453.1| Phosphatidate cytidylyltransferase [Medicago truncatula] Back     alignment and taxonomy information
>gi|356535384|ref|XP_003536226.1| PREDICTED: phosphatidate cytidylyltransferase-like [Glycine max] Back     alignment and taxonomy information
>gi|297799782|ref|XP_002867775.1| hypothetical protein ARALYDRAFT_492631 [Arabidopsis lyrata subsp. lyrata] gi|297313611|gb|EFH44034.1| hypothetical protein ARALYDRAFT_492631 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15235611|ref|NP_193965.1| cytidinediphosphate diacylglycerol synthase 2 [Arabidopsis thaliana] gi|4455156|emb|CAA16784.1| CDP-diacylglycerol synthetase-like protein [Arabidopsis thaliana] gi|7269080|emb|CAB79189.1| CDP-diacylglycerol synthetase-like protein [Arabidopsis thaliana] gi|17644177|gb|AAL38786.1| putative CDP-diacylglycerol synthetase [Arabidopsis thaliana] gi|20259077|gb|AAM14254.1| putative CDP-diacylglycerol synthetase [Arabidopsis thaliana] gi|21536804|gb|AAM61136.1| CDP-diacylglycerol synthetase-like protein [Arabidopsis thaliana] gi|332659195|gb|AEE84595.1| cytidinediphosphate diacylglycerol synthase 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|79325225|ref|NP_001031697.1| cytidinediphosphate diacylglycerol synthase 2 [Arabidopsis thaliana] gi|332659197|gb|AEE84597.1| cytidinediphosphate diacylglycerol synthase 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|42572989|ref|NP_974591.1| cytidinediphosphate diacylglycerol synthase 2 [Arabidopsis thaliana] gi|332659196|gb|AEE84596.1| cytidinediphosphate diacylglycerol synthase 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224118188|ref|XP_002331579.1| predicted protein [Populus trichocarpa] gi|222873803|gb|EEF10934.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query314
TAIR|locus:2132026447 CDS2 "cytidinediphosphate diac 0.993 0.697 0.841 6.4e-147
TAIR|locus:2027144421 CDS1 "CDP-diacylglycerol synth 0.984 0.733 0.833 4.6e-144
TAIR|locus:2116272471 AT4G26770 [Arabidopsis thalian 0.996 0.664 0.785 8.9e-141
ASPGD|ASPL0000030062450 AN5166 [Emericella nidulans (t 0.955 0.666 0.474 1.7e-75
UNIPROTKB|F6Z956467 CDS1 "Phosphatidate cytidylylt 0.958 0.644 0.453 2.2e-73
UNIPROTKB|F7H8N4419 CDS1 "Phosphatidate cytidylylt 0.958 0.718 0.453 7.5e-73
ZFIN|ZDB-GENE-070705-78431 si:ch211-168m18.1 "si:ch211-16 0.958 0.698 0.457 9.6e-73
UNIPROTKB|G1LAF9459 CDS1 "Phosphatidate cytidylylt 0.958 0.655 0.457 1.2e-72
UNIPROTKB|G3MZU2461 LOC100336936 "Phosphatidate cy 0.958 0.652 0.457 1.6e-72
UNIPROTKB|F6SYW0461 CDS1 "Phosphatidate cytidylylt 0.958 0.652 0.453 1.6e-72
TAIR|locus:2132026 CDS2 "cytidinediphosphate diacylglycerol synthase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1435 (510.2 bits), Expect = 6.4e-147, P = 6.4e-147
 Identities = 266/316 (84%), Positives = 290/316 (91%)

Query:     1 MLNWHFFFTAMLFVYGRILSQRLVNTVTSDKFLYQFVSSLIKYHMVICYFLYISGFVWFI 60
             +LNWHFFFTAMLFVYGRILSQRLVNTVT DK LY+ V+SLIKYHM ICY LYISGFVWFI
Sbjct:   131 LLNWHFFFTAMLFVYGRILSQRLVNTVTPDKVLYRLVTSLIKYHMAICYSLYISGFVWFI 190

Query:    61 LTLKKKMYKYQFSQYAWTHMILIVVFAQSSFTVASIFEGIFWFLLPASLIVINDIAAYIF 120
             LTLKKKMYKYQFSQYAWTHMILIVVF QSSFTVA+IFEGIFWFLLPASLIVINDI AYI 
Sbjct:   191 LTLKKKMYKYQFSQYAWTHMILIVVFTQSSFTVANIFEGIFWFLLPASLIVINDIFAYIC 250

Query:   121 GFFFGRTPLIKLSPKKTWEGFIGASVATITSAFVLANIMGRFQWLTCPRKDLATGWLHCD 180
             GFFFGRTPLIKLSPKKTWEGFIGAS+ T+ SAF+LANIMGRF WLTCPR+DL+TGWL CD
Sbjct:   251 GFFFGRTPLIKLSPKKTWEGFIGASITTVISAFLLANIMGRFLWLTCPREDLSTGWLLCD 310

Query:   181 PGPLFKPESFPLPGW----LPWKEITILPVQWHALCLGLFASIIAPFGGFFASGFKRAFK 236
             PGPLFK E+  LPGW    LPWKEI+ILPVQWHALCLGLFASIIAPFGGFFASGFKRAFK
Sbjct:   311 PGPLFKQETHALPGWISDWLPWKEISILPVQWHALCLGLFASIIAPFGGFFASGFKRAFK 370

Query:   237 IKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFIVPQSFRVEMILEQILTALTYEEQK 296
             IKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSF+VP+   V+ +L+QI+T+LT EEQ+
Sbjct:   371 IKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFVVPEVLSVDKLLDQIITSLTLEEQQ 430

Query:   297 ALYMKLGEILQERLFG 312
             AL +KLG++LQE++ G
Sbjct:   431 ALLVKLGQMLQEKVIG 446




GO:0004605 "phosphatidate cytidylyltransferase activity" evidence=IEA;ISS;IMP
GO:0016020 "membrane" evidence=IEA
GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA
GO:0019408 "dolichol biosynthetic process" evidence=RCA
GO:0005783 "endoplasmic reticulum" evidence=IDA
TAIR|locus:2027144 CDS1 "CDP-diacylglycerol synthase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2116272 AT4G26770 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000030062 AN5166 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|F6Z956 CDS1 "Phosphatidate cytidylyltransferase" [Monodelphis domestica (taxid:13616)] Back     alignment and assigned GO terms
UNIPROTKB|F7H8N4 CDS1 "Phosphatidate cytidylyltransferase" [Macaca mulatta (taxid:9544)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070705-78 si:ch211-168m18.1 "si:ch211-168m18.1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|G1LAF9 CDS1 "Phosphatidate cytidylyltransferase" [Ailuropoda melanoleuca (taxid:9646)] Back     alignment and assigned GO terms
UNIPROTKB|G3MZU2 LOC100336936 "Phosphatidate cytidylyltransferase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F6SYW0 CDS1 "Phosphatidate cytidylyltransferase" [Equus caballus (taxid:9796)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O04940CDS1_SOLTU2, ., 7, ., 7, ., 4, 10.83011.00.7405N/Ano

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.7.7.410.991
3rd Layer2.7.70.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query314
PLN02594342 PLN02594, PLN02594, phosphatidate cytidylyltransfe 0.0
pfam01148259 pfam01148, CTP_transf_1, Cytidylyltransferase fami 3e-44
COG0575265 COG0575, CdsA, CDP-diglyceride synthetase [Lipid m 4e-26
COG4589303 COG4589, COG4589, Predicted CDP-diglyceride synthe 3e-12
PLN02953403 PLN02953, PLN02953, phosphatidate cytidylyltransfe 6e-12
PRK11624285 PRK11624, cdsA, CDP-diglyceride synthase; Provisio 2e-10
>gnl|CDD|215322 PLN02594, PLN02594, phosphatidate cytidylyltransferase Back     alignment and domain information
 Score =  578 bits (1493), Expect = 0.0
 Identities = 266/318 (83%), Positives = 286/318 (89%), Gaps = 4/318 (1%)

Query: 1   MLNWHFFFTAMLFVYGRILSQRLVNTVTSDKFLYQFVSSLIKYHMVICYFLYISGFVWFI 60
           +LNWHFFFTAM FVYGR L Q+LVNTVTSDKFLY+ VS LIKYHM ICY LYI+GFVWFI
Sbjct: 25  LLNWHFFFTAMFFVYGRFLKQQLVNTVTSDKFLYRLVSGLIKYHMAICYSLYIAGFVWFI 84

Query: 61  LTLKKKMYKYQFSQYAWTHMILIVVFAQSSFTVASIFEGIFWFLLPASLIVINDIAAYIF 120
           LTLKK MYKYQF QYAWTHMILIVVF QSSFTVA+IFEGIFWFLLPASLIVINDIAAY+F
Sbjct: 85  LTLKKGMYKYQFGQYAWTHMILIVVFTQSSFTVANIFEGIFWFLLPASLIVINDIAAYLF 144

Query: 121 GFFFGRTPLIKLSPKKTWEGFIGASVATITSAFVLANIMGRFQWLTCPRKDLATGWLHCD 180
           GFFFGRTPLIKLSPKKTWEGFIGASV T+ SAF LANIMG+FQWLTCPRKDL+TGWL CD
Sbjct: 145 GFFFGRTPLIKLSPKKTWEGFIGASVTTLISAFYLANIMGKFQWLTCPRKDLSTGWLECD 204

Query: 181 PGPLFKPESFPLPGW----LPWKEITILPVQWHALCLGLFASIIAPFGGFFASGFKRAFK 236
           P PLFKPE++PLPGW     PWKE+++LPVQWHAL LGLFASIIAPFGGFFASGFKRAFK
Sbjct: 205 PDPLFKPETYPLPGWIPRWFPWKEVSVLPVQWHALSLGLFASIIAPFGGFFASGFKRAFK 264

Query: 237 IKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFIVPQSFRVEMILEQILTALTYEEQK 296
           IKDFGDSIPGHGGITDRMDCQMVMAVFAYIY+QSFIVPQS  V  +L+QILT LT EEQK
Sbjct: 265 IKDFGDSIPGHGGITDRMDCQMVMAVFAYIYYQSFIVPQSVSVGKLLDQILTLLTDEEQK 324

Query: 297 ALYMKLGEILQERLFGQS 314
            LY+KLG++LQER  G  
Sbjct: 325 ELYVKLGQMLQERGLGLG 342


Length = 342

>gnl|CDD|216329 pfam01148, CTP_transf_1, Cytidylyltransferase family Back     alignment and domain information
>gnl|CDD|223648 COG0575, CdsA, CDP-diglyceride synthetase [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|226955 COG4589, COG4589, Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only] Back     alignment and domain information
>gnl|CDD|178539 PLN02953, PLN02953, phosphatidate cytidylyltransferase Back     alignment and domain information
>gnl|CDD|183240 PRK11624, cdsA, CDP-diglyceride synthase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 314
PLN02594342 phosphatidate cytidylyltransferase 100.0
KOG1440432 consensus CDP-diacylglycerol synthase [Lipid trans 100.0
PRK11624285 cdsA CDP-diglyceride synthase; Provisional 100.0
COG0575265 CdsA CDP-diglyceride synthetase [Lipid metabolism] 100.0
PLN02953403 phosphatidate cytidylyltransferase 100.0
PF01148259 CTP_transf_1: Cytidylyltransferase family; InterPr 100.0
COG4589303 Predicted CDP-diglyceride synthetase/phosphatidate 100.0
PRK04032159 hypothetical protein; Provisional 99.94
PF01864175 DUF46: Putative integral membrane protein DUF46; I 99.63
KOG4453269 consensus Predicted ER membrane protein [Function 97.5
COG0170216 SEC59 Dolichol kinase [Lipid metabolism] 97.28
KOG2468510 consensus Dolichol kinase [Lipid transport and met 94.7
>PLN02594 phosphatidate cytidylyltransferase Back     alignment and domain information
Probab=100.00  E-value=4.8e-93  Score=682.13  Aligned_cols=314  Identities=85%  Similarity=1.463  Sum_probs=301.6

Q ss_pred             CcchhhHHHHHHHHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Q 021288            1 MLNWHFFFTAMLFVYGRILSQRLVNTVTSDKFLYQFVSSLIKYHMVICYFLYISGFVWFILTLKKKMYKYQFSQYAWTHM   80 (314)
Q Consensus         1 ~l~wy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~h~~i~~~ly~~~~v~fvlsL~~~~~~~~~~~~~~t~~   80 (314)
                      ++|||||++++||+|||++.+++++.+.+++.+..++.++++||+++||++|++|+++||++|+|+++++|+.+++||++
T Consensus        25 ~l~Wyf~~~~~~~~yg~~~~~~~~~~~~~~~~l~~~~~~~~~~h~~isf~ly~~gfv~FvlsL~k~~~k~qf~~~a~t~~  104 (342)
T PLN02594         25 LLNWHFFFTAMFFVYGRFLKQQLVNTVTSDKFLYRLVSGLIKYHMAICYSLYIAGFVWFILTLKKGMYKYQFGQYAWTHM  104 (342)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence            58999999999999999999999999999998888888899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhcchhHhHhhhccCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhh
Q 021288           81 ILIVVFAQSSFTVASIFEGIFWFLLPASLIVINDIAAYIFGFFFGRTPLIKLSPKKTWEGFIGASVATITSAFVLANIMG  160 (314)
Q Consensus        81 ~ll~v~~~~~~~~~~~~~G~~w~ll~~~~v~~nD~~AY~~G~~fGk~kL~~iSPkKTwEGfiGG~i~t~i~~~~~~~~~~  160 (314)
                      ++++++.++++++.|+++|.+|+++|+.+||+||++||++||.|||||++++||||||||++||+++|++++.+++.+++
T Consensus       105 ~llyV~~~~~~ii~ni~~G~~w~~l~~~lV~~nDi~AY~~G~~fGk~kL~~iSPkKTwEGfiGg~i~T~i~~~~~~~~~~  184 (342)
T PLN02594        105 ILIVVFTQSSFTVANIFEGIFWFLLPASLIVINDIAAYLFGFFFGRTPLIKLSPKKTWEGFIGASVTTLISAFYLANIMG  184 (342)
T ss_pred             HHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCccCCCCchhhhHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccccccCCCCCCCCccccCCCCCCCCcccCCCCCC----CccccccchhHHHHHHHHHHHHHhhhhhhHHHHHHhhcCC
Q 021288          161 RFQWLTCPRKDLATGWLHCDPGPLFKPESFPLPGWL----PWKEITILPVQWHALCLGLFASIIAPFGGFFASGFKRAFK  236 (314)
Q Consensus       161 ~~~~~~cp~~~~~~~~~~c~~~~~f~~~~~~~~~~~----~~~~~~~~~~~~~~l~l~~~~sl~a~~GDl~~S~iKR~~~  236 (314)
                      +++|++||.++++.++++|||||+|++++|.+|.+.    +..++++.|.++|++++|+++|++||+|||+||++||++|
T Consensus       185 ~~~~~~cp~~~~~~~~~~C~p~~~f~~~~~~~p~~~~~~~~~~~i~~~~~~~h~l~l~l~aSl~a~fGdlfaS~~KR~~~  264 (342)
T PLN02594        185 KFQWLTCPRKDLSTGWLECDPDPLFKPETYPLPGWIPRWFPWKEVSVLPVQWHALSLGLFASIIAPFGGFFASGFKRAFK  264 (342)
T ss_pred             ccccccCCccccccCcccCCCccccccccccCCccccccccccccccchHHHHHHHHHHHHHHHHHhhhHHHHHHHHccC
Confidence            999999999999989999999999999999999653    3345677788999999999999999999999999999999


Q ss_pred             CCcCCCCCCCCcchhhhhhhhhHHHHHHHHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccCCC
Q 021288          237 IKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFIVPQSFRVEMILEQILTALTYEEQKALYMKLGEILQERLFGQS  314 (314)
Q Consensus       237 IKD~G~~iPGHGGilDR~Ds~l~~~~f~y~y~~~fi~~~~~~~~~~~~~~~~~l~~~~q~~l~~~l~~~~~~~~~~~~  314 (314)
                      |||||+++|||||++||+||+++|+|++|+|+++||+.+++|++++++++.++|++|||+||++.|++++++||++.+
T Consensus       265 IKDfG~~IPGHGGilDRfDs~l~~~~f~y~y~~~fi~~~~~~~~~il~~i~~~l~~~~q~~l~~~l~~~l~~~g~~~~  342 (342)
T PLN02594        265 IKDFGDSIPGHGGITDRMDCQMVMAVFAYIYYQSFIVPQSVSVGKLLDQILTLLTDEEQKELYVKLGQMLQERGLGLG  342 (342)
T ss_pred             CCcccCccCCCccccccccHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCCC
Confidence            999999999999999999999999999999999999999999999999998899999999999999999999998764



>KOG1440 consensus CDP-diacylglycerol synthase [Lipid transport and metabolism] Back     alignment and domain information
>PRK11624 cdsA CDP-diglyceride synthase; Provisional Back     alignment and domain information
>COG0575 CdsA CDP-diglyceride synthetase [Lipid metabolism] Back     alignment and domain information
>PLN02953 phosphatidate cytidylyltransferase Back     alignment and domain information
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2 Back     alignment and domain information
>COG4589 Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only] Back     alignment and domain information
>PRK04032 hypothetical protein; Provisional Back     alignment and domain information
>PF01864 DUF46: Putative integral membrane protein DUF46; InterPro: IPR002726 This archaebacterial protein has no known function Back     alignment and domain information
>KOG4453 consensus Predicted ER membrane protein [Function unknown] Back     alignment and domain information
>COG0170 SEC59 Dolichol kinase [Lipid metabolism] Back     alignment and domain information
>KOG2468 consensus Dolichol kinase [Lipid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query314
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 55/375 (14%), Positives = 95/375 (25%), Gaps = 138/375 (36%)

Query: 11  MLFVYGRILSQRLVNTVTSDKFLYQFVSSLIKYHMV---ICYFLYIS------------- 54
            L      + Q+ V  V      Y+F+ S IK       +   +YI              
Sbjct: 70  TLLSKQEEMVQKFVEEVLRIN--YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127

Query: 55  -GFVW---FILTLKKKMYKYQFSQYAWTH-M------ILIVVFAQSSFTVASIFEGIFWF 103
              V      L L++ + + + ++      +       + +    S      +   IFW 
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187

Query: 104 LL-----PASLI--------------------------VINDIAAYIFGFFFGR---TPL 129
            L     P +++                           I+ I A +      +     L
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247

Query: 130 IKL---SPKKTWEGF-IG---------ASVATITSAFVLANI-MGRFQW-LTCPR-KDLA 173
           + L      K W  F +            V    SA    +I +      LT    K L 
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307

Query: 174 TGWLHCDPGPLFKPESFPLPGWLPWKEITILPVQWHALCLGLFASIIAPFGGFFASGFKR 233
             +L C P  L            P + +T  P       L + A                
Sbjct: 308 LKYLDCRPQDL------------PREVLTTNP-----RRLSIIAE--------------- 335

Query: 234 AFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFIVPQSFRVEMILEQILTALTYE 293
              I+D               D            H         ++  I+E  L  L   
Sbjct: 336 --SIRDG----------LATWD---------NWKH-----VNCDKLTTIIESSLNVLEPA 369

Query: 294 EQKALYMKLGEILQE 308
           E + ++ +L  +   
Sbjct: 370 EYRKMFDRLS-VFPP 383


Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00