Citrus Sinensis ID: 021291

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310----
Protein Sequence
MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFGIGFVCDQEGNKFGTTWHIRHLNST
Secondary Structure (PSIPRED)
ccccccccccEEEEEcccccEEEEEEEccccEEEEEcccccEEEEEccccEEEEEEccccccccEEEEEEEccccccEEEEEEccccEEEEEcccccccccccEEEEEccEEEEEEEEcccccEEEEcccccEEEEEccccEEEEcccccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEcccccccccccccccccccEEEEEEEcccccccccEEEEEEccccEEEEEcccccEEEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEccccEEEEEEEEEEEcccccEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEcccccccccccEEEEEEcccccccEEEEcccccEEEEEEcccccccccccEEEcccccEEEcEEEEccccccEEEEEccccccEEEEEEcccccccccccccccccccccEEEEccccccEEEEEEcccccEEEEEcccccccccccccccccEEEEEEEccccccccEEEEEEccccEEEEEEcccccccccccccccccEEEEEEcccccEEEEEccccEEEEEEEcccEEEEEEEEEEccccccEEEEEcEEcccccc
Coil and Loop (DISEMBL)
mskrppppdpvavlrghrasvtdvcfhqtkpilfagttggelriWDTVQHRTVSSSWVHSAAHGIVsvatgpsiglnkvisqgrdgtvkcwdiengglssnpsltiktnsyhFCKLSLvkepyanakqanepkdcyerevgetvdtdslcdskddvpaegpkYMAVAGEQLSEVEIWDLNTAErctrlhqnscggspnfsskgrGMCMAVQaylpsksqGFVNVLagyedgsilvwdirnpgipltamkVHLEPVLCLsidescnggisggadqKIVLYNLDHSTYVLFGIGFvcdqegnkfgtTWHIRHLNST
Flexible Loop (DISEMBL)
mskrppppdpvAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGglssnpsltiKTNSYHFCKLSLVKEPYanakqanepkdcyerEVGEtvdtdslcdskddVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFGIGFVCDQEGNKFGTTWhirhlnst
Low Complexity Region (SEG)
MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFGIGFVCDQEGNKFGTTWHIRHLNST
Disordered region (IsUnstruct)
************VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA**************************************YMAVAGEQLSEVEIWDLNTAERCTRLHQNSC**********RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFGIGFVCDQEGNKFGTTWHIRH****
Disordered Region (DISOPRED)
****PPP*DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFGIGFVCDQEGNKFGTTWHIRHLN**
Disordered Region (DISEMBL)
**********VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFGIGFVCDQEGNKFGTTWHIRHLNST
Disordered Region (DISPRO)
*****PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFGIGFVCDQEGNKFGTTWHIRHLN**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFGIGFVCDQEGNKFGTTWHIRHLNST
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	314	2.2.26 [Sep-21-2011]
Q54HW5	359	Guanine nucleotide-bindin	yes	no	0.757	0.662	0.260	6e-22
Q9EQ15	326	Guanine nucleotide-bindin	yes	no	0.722	0.696	0.257	2e-15
Q9BYB4	327	Guanine nucleotide-bindin	yes	no	0.675	0.648	0.244	1e-11
A7UWE6	485	ASTRA-associated protein	N/A	no	0.764	0.494	0.238	4e-09
A4RJA0	469	ASTRA-associated protein	N/A	no	0.729	0.488	0.241	2e-07
A2RA56	440	ASTRA-associated protein	yes	no	0.764	0.545	0.245	2e-06
P41318	303	Target of rapamycin compl	yes	no	0.270	0.280	0.322	4e-06
Q28YY2	680	WD repeat-containing prot	no	no	0.834	0.385	0.259	4e-06
B4GIJ0	680	WD repeat-containing prot	N/A	no	0.834	0.385	0.259	4e-06
B8NG55	429	ASTRA-associated protein	N/A	no	0.681	0.498	0.227	8e-06

>sp|Q54HW5|GNB1L_DICDI Guanine nucleotide-binding protein subunit beta-like protein 1 homolog OS=Dictyostelium discoideum GN=gnb1l PE=4 SV=1

 Score =  105 bits (261), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 133/299 (44%), Gaps = 61/299 (20%)

Query: 8   PDPVAVLRGHRASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAA--HG 64
           PDP  +LRGH+ +V  V F +  P +L++G+  GEL++W+  + + +S+   HS     G
Sbjct: 13  PDPYYILRGHKFNVNSVLFDKVNPNLLYSGSGDGELKLWNIEEKKCISTQIAHSEGIGGG 72

Query: 65  IVSVATGPSIGLN-----------KVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHF 113
           ++S+    +   N            ++SQGRDG +K W I +     N +  ++TNS   
Sbjct: 73  VLSLQWLSNDNNNENNNNNDEICGNILSQGRDGVIKIWSIIDNCTFKN-TYRLETNS--- 128

Query: 114 CKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSE 173
             LSL K                             C S                   S+
Sbjct: 129 --LSLGK-----------------------------CSSLSSNLLSISGSAIDPTSSTSQ 157

Query: 174 VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGF-------VNVLA 226
           VEIWDL   +   +L  N+            G+ M+++ Y  +++          + +  
Sbjct: 158 VEIWDLKNKQVINKLKPNNQQLFEKL-----GLPMSLKLYYENENNDNSNQSNDQIRLCT 212

Query: 227 GYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST 285
           GYE+G +L+WD+RN  IPL + K+H EP+L  ++  +   GISG  D  I+ +N+++ +
Sbjct: 213 GYENGELLIWDLRNTSIPLVSSKLHNEPILSFALSNNSTKGISGSGDTNIIEFNINYES 271

Dictyostelium discoideum (taxid: 44689)

>sp|Q9EQ15|GNB1L_MOUSE Guanine nucleotide-binding protein subunit beta-like protein 1 OS=Mus musculus GN=Gnb1l PE=2 SV=2

 Score = 83.6 bits (205), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 122/283 (43%), Gaps = 56/283 (19%)

Query: 5   PPPPDPVAVLRGHRASVTDVCF-----HQTKPILFAGTTGGELRIWDTVQHRTVSSSWVH 59
           PPPP P  VLRG +++V  + F         P+LF+G+  G + IW ++Q R + ++   
Sbjct: 6   PPPPGPRFVLRGTQSAVNTLHFCPPSQAAGNPLLFSGSQNGLVHIW-SLQTRRIVTTLNG 64

Query: 60  SAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLV 119
               G++ + T P    ++++SQGRD  +  WD+E G  +   S  ++ +S  FC+ S++
Sbjct: 65  HGGQGVIWLKTLPQG--HQLLSQGRDLRLCLWDLEEGRNTIMDS--VQLDSVGFCRGSIL 120

Query: 120 KEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDL 179
                    A   K   E ++ E     S+C  K +  A     M +         +W  
Sbjct: 121 VRGQQCWMLAVPGKGSDEVQILEMPSKTSVCTLKPEADARPGMPMCLG--------LWQT 172

Query: 180 NTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239
           N++ R                                       +LAGYEDGS+ +WDI 
Sbjct: 173 NSSLRPL-------------------------------------LLAGYEDGSVTLWDIS 195

Query: 240 NPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD 282
              +  + +  H EPV+ L  D     GISG A + + +++LD
Sbjct: 196 ERKV-CSQITCHEEPVMGLDFDSQKAKGISGSAGKVLAVWSLD 237

Mus musculus (taxid: 10090)

>sp|Q9BYB4|GNB1L_HUMAN Guanine nucleotide-binding protein subunit beta-like protein 1 OS=Homo sapiens GN=GNB1L PE=1 SV=2

 Score = 70.9 bits (172), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 113/286 (39%), Gaps = 74/286 (25%)

Query: 11  VAVLRGHRASVTDVCF-----HQTKPILFAGTTGGELRIWDTVQHRTVSS---------S 56
             VLRG ++ V  + F      Q +P+LF+G+  G + IW     R V++         +
Sbjct: 13  QFVLRGTQSPVHALHFCEGAQAQGRPLLFSGSQSGLVHIWSLQTRRAVTTLDGHGGQCVT 72

Query: 57  WVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKL 116
           W+ +   G             +++SQGRD  +  WD+  G  +   S+ ++  S  FC+ 
Sbjct: 73  WLQTLPQG------------RQLLSQGRDLKLCLWDLAEGRSAVVDSVCLE--SVGFCRS 118

Query: 117 SLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI 176
           S++         A   +   E ++ E     S+C  K       PK  A  G  +     
Sbjct: 119 SILAGGQPRWTLAVPGRGSDEVQILEMPSKTSVCALK-------PKADAKLGMPM----- 166

Query: 177 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 236
                   C RL Q  C   P                           LAGYEDGS+++W
Sbjct: 167 --------CLRLWQADCSSRPLL-------------------------LAGYEDGSVVLW 193

Query: 237 DIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD 282
           D+    +  + +  H EPV+ L  D     GISG A + + +++LD
Sbjct: 194 DVSEQKV-CSRIACHEEPVMDLDFDSQKARGISGSAGKALAVWSLD 238

Homo sapiens (taxid: 9606)

>sp|A7UWE6|ASA1_NEUCR ASTRA-associated protein 1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=asa-1 PE=3 SV=1

 Score = 62.4 bits (150), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 120/298 (40%), Gaps = 58/298 (19%)

Query: 7   PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIV 66
           PP P ++LRGH+A V    F +    L  G   G +  WD    R  +    H  A  I+
Sbjct: 7   PPTPKSILRGHKAQVHAATFIRNNERLVTGDADGFVIAWDLTIMRPRAVWQAHDNA--IL 64

Query: 67  SVATGPSIGLNKVISQGRDGTVKCWDI---ENGGLSSNPSL--------------TIKTN 109
            +A     G +++I+ GRD  +  W +   +   +S+   L               ++ N
Sbjct: 65  GIA---GWGNDRIITHGRDNKLIVWKLIGDDEARMSTTLPLDPCAEPRPKPWILHLLEVN 121

Query: 110 SYHFCKLSL--VKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167
           + +FC  S   V  P    +Q  + +D  +    E+                    +AV 
Sbjct: 122 TMNFCSFSYCPVSAPVLPGQQEGQSQDTAQESRFES-----------------ELLIAVP 164

Query: 168 GEQLSE-VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA 226
               SE ++I+ L +    TR H    G          GM MAV  +  + S   + ++A
Sbjct: 165 NTLASEAIDIFHLPSQ---TRRHTVKLGDK-------NGMVMAVALFNQADS---LTLVA 211

Query: 227 GYEDGSILVWD---IRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL 281
           GYE+G  +V     ++N  +PL     H +P+L LS+  + +  ++  AD  I  + L
Sbjct: 212 GYENGLAIVAHRDPVKNDWVPLYQATCHSQPILSLSVSPARDFFLTSSADAVIAKHPL 269

Component of the ASTRA complex involved in chromatin remodeling.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|A4RJA0|ASA1_MAGO7 ASTRA-associated protein 1 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=asa1 PE=3 SV=1

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 116/290 (40%), Gaps = 61/290 (21%)

Query: 7   PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIV 66
           P  P ++LRGH+A V    F +    L  G   G + +WD    R   + W    AH  V
Sbjct: 12  PAHPRSILRGHKAQVHAAAFVRNNERLVTGDADGFVVVWDLTIMRP-RAVW---RAHDDV 67

Query: 67  SVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANA 126
            +  G   G +++I+ GRD  +  W +      S                +L  +P A  
Sbjct: 68  LLGIG-GWGTDRLITHGRDNKLIVWQLREADEDS-------------LAKTLPVDPAAED 113

Query: 127 KQANEPKDCYEREVGETVD--TDSLCDSKDDVPAEGPKYMAVAGEQLSE--VEIWDLNTA 182
           +   +P   Y  E+  T++  T SLC+   D  +E  + +      LS   ++I+ L + 
Sbjct: 114 RP--KPWLLYMLEIS-TMNFCTFSLCEMSSDPLSEDREALIAVPNTLSSEAIDIFHLPSQ 170

Query: 183 ER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV----- 235
           +R    RL Q+             GM MA++ +   +  G+  V  GYE+G  LV     
Sbjct: 171 KREHTIRLGQSE------------GMVMALELF---RVDGYFTVAVGYENGVALVAQQAE 215

Query: 236 --------WDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIV 277
                   W++R         K H +PVL L +    +  ++  AD  ++
Sbjct: 216 RSETPVGTWNVRYRS------KAHTQPVLSLDVSLGRDFFLTSSADSLLI 259

Component of the ASTRA complex involved in chromatin remodeling.

Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) (taxid: 242507)

>sp|A2RA56|ASA1_ASPNC ASTRA-associated protein 1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=asa1 PE=3 SV=1

 Score = 53.9 bits (128), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 119/309 (38%), Gaps = 69/309 (22%)

Query: 4   RPPPPDPVAVLRGHRASVTDV-CFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAA 62
           R PP  P  +LRGH A++  +  FHQ    L +G   G + +WD V  R   ++W   A 
Sbjct: 9   RQPPATPTYILRGHAAAIHALQIFHQNLR-LVSGDADGWIVVWDLVSKRP-RATW--KAH 64

Query: 63  HGIVSVATGPSIG---LNKVISQGRDGTVKCW----------------DIE--NGGLSSN 101
            G V    G S G   + +V + GRD  ++ W                DIE  +   +S 
Sbjct: 65  DGTVLEVKGFSFGNGAVTEVFTHGRDHKLRVWRFSLQDEESLQKVLPVDIEKTSSTAASQ 124

Query: 102 PSL--TIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAE 159
           P L  ++  N+ +FC  S+V  P   A  A++  +  +    E     S+  +  +    
Sbjct: 125 PWLVHSLPVNALNFCAFSMVFLPPDKANTASDASEAPK----ENTSLSSVLIAVPNALNS 180

Query: 160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQ 219
           G             ++++ L    R   +        P  +    GM MA  A L     
Sbjct: 181 G------------AIDLFHLPQERRICTI--------PADTEVQTGMVMA--ANLVISPS 218

Query: 220 GFVNVLAGYEDGSILVWDIR----------NPGIP-----LTAMKVHLEPVLCLSIDESC 264
           G + V + YEDG ++V   R          +   P     L   + H +PVL L +  + 
Sbjct: 219 GELYVASAYEDGRVMVHGCRGSLQEKDLTQSTKTPWKWEKLYVCRAHSQPVLSLHVSPAG 278

Query: 265 NGGISGGAD 273
           N   S  AD
Sbjct: 279 NYFFSSSAD 287

Component of the ASTRA complex involved in chromatin remodeling.

Aspergillus niger (strain CBS 513.88 / FGSC A1513) (taxid: 425011)

>sp|P41318|LST8_YEAST Target of rapamycin complex subunit LST8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LST8 PE=1 SV=1

 Score = 52.4 bits (124), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 5/90 (5%)

Query: 4   RPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAH 63
           R   P+PVA   GHR +VT V F Q    +   +  G +++WD V+  ++  ++ H+A  
Sbjct: 61  RTTNPNPVASFEGHRGNVTSVSFQQDNRWMVTSSEDGTIKVWD-VRSPSIPRNYKHNAP- 118

Query: 64  GIVSVATGPSIGLNKVISQGRDGTVKCWDI 93
            +  V   P+ G  ++IS  RDG ++ WD+
Sbjct: 119 -VNEVVIHPNQG--ELISCDRDGNIRIWDL 145

Essential component of both TORC1 and TORC2. TORC1 regulates multiple cellular processes to control cell growth in response to environmental signals. Nutrient limitation and environmental stress signals cause inactivation of TORC1. Active TORC1 positively controls ribosome biogenesis via control of rRNA, ribosomal protein and tRNA gene expression, and rRNA processing. TORC1 positively controls protein biosynthesis by regulation of mRNA stability, translation initiation factor activity, and high-affinity amino acid permeases that serve to provide amino acids for use by the translation machinery. TORC1 also promotes growth by sequestering a number of nutrient and general stress-responsive transcription factors in the cytoplasm. TORC1 negatively controls macroautophagy, a process to recycle surplus cytoplasmic mass under nutrient starvation conditions. LST8 is involved in the negative regulation of transcription factors GLN3 and RTG1-RTG3, limiting the synthesis of alpha-ketoglutarate, glutamate and glutamine. LST8 is required for targeting of amino acid permeases (AAPs) to the plasma membrane. TORC2 regulates cell cycle-dependent polarization of the actin-cytoskeleton, cell wall integrity, and receptor endocytosis. TORC2 controls polarity of the actin cytoskeleton, which is required for orienting the secretory pathway toward discrete growth sites, via the RHO1/PKC1/MAPK cell integrity pathway. LST8 is involved in maintenance of cell wall integrity. LST8 modulates TOR2 kinase activity.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q28YY2|WDR48_DROPS WD repeat-containing protein 48 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA21511 PE=3 SV=2

 Score = 52.4 bits (124), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 83/320 (25%), Positives = 130/320 (40%), Gaps = 58/320 (18%)

Query: 15  RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAH------GIVSV 68
           + HR  V  +        L++      +R+W+T      S  ++ S  H       IV  
Sbjct: 25  KQHRNGVNSLQLDPNNGKLYSAGRDAIIRVWNTRSES--SEKYIQSMEHHNDWVNDIVLC 82

Query: 69  ATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQ 128
             G ++     IS   D TVK W+ + G   S    T++T+  +   L+  K+    A  
Sbjct: 83  CNGRNL-----ISASCDTTVKVWNAQKGFCMS----TLRTHRDYVQALAYAKDREQVAS- 132

Query: 129 ANEPKDCYEREVG---------ETVDTDSLCDSKDDV--PAEGPK-YMAVAGEQLSEVEI 176
           A   K  +  +V           TV T SL  SKD +   A  P   + V+G   + + I
Sbjct: 133 AGLDKAIFLWDVNTLTALTASNNTVTTSSLTGSKDSIYSLAMNPSGTVIVSGSTENILRI 192

Query: 177 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 236
           WD  T  R  +L     G + N        C+ V    P  +Q    V++G  DG+I VW
Sbjct: 193 WDPRTCMRSMKLR----GHTENVR------CLVVS---PDGNQ----VVSGSSDGTIKVW 235

Query: 237 DIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIV---LYNLDHSTYV------ 287
           ++       T + VH E V  L + E+    ISG  DQ I+   + N  + T V      
Sbjct: 236 NLGQQRCVQT-IHVHKEGVWSLLMSENFQYIISGSRDQNIIVTEMRNPSNKTLVCEEKAP 294

Query: 288 LFGIGFVCDQEGNKFGTTWH 307
           +  +G+  D+ G  + TTW+
Sbjct: 295 VLSLGYNMDKTG-VWATTWN 313

Regulator of deubiquitinating complexes. Activates deubiquitination by increasing the catalytic turnover without increasing the affinity of deubiquitinating enzymes for the substrate.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|B4GIJ0|WDR48_DROPE WD repeat-containing protein 48 homolog OS=Drosophila persimilis GN=GL16745 PE=3 SV=1

 Score = 52.4 bits (124), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 83/320 (25%), Positives = 130/320 (40%), Gaps = 58/320 (18%)

Query: 15  RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAH------GIVSV 68
           + HR  V  +        L++      +R+W+T      S  ++ S  H       IV  
Sbjct: 25  KQHRNGVNSLQLDPNNGKLYSAGRDAIIRVWNTRSES--SEKYIQSMEHHNDWVNDIVLC 82

Query: 69  ATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQ 128
             G ++     IS   D TVK W+ + G   S    T++T+  +   L+  K+    A  
Sbjct: 83  CNGRNL-----ISASCDTTVKVWNAQKGFCMS----TLRTHRDYVQALAYAKDREQVAS- 132

Query: 129 ANEPKDCYEREVG---------ETVDTDSLCDSKDDV--PAEGPK-YMAVAGEQLSEVEI 176
           A   K  +  +V           TV T SL  SKD +   A  P   + V+G   + + I
Sbjct: 133 AGLDKAIFLWDVNTLTALTASNNTVTTSSLTGSKDSIYSLAMNPSGTVIVSGSTENILRI 192

Query: 177 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 236
           WD  T  R  +L     G + N        C+ V    P  +Q    V++G  DG+I VW
Sbjct: 193 WDPRTCMRSMKLR----GHTENVR------CLVVS---PDGNQ----VVSGSSDGTIKVW 235

Query: 237 DIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIV---LYNLDHSTYV------ 287
           ++       T + VH E V  L + E+    ISG  DQ I+   + N  + T V      
Sbjct: 236 NLGQQRCVQT-IHVHKEGVWSLLMSENFQYIISGSRDQNIIVTEMRNPSNKTLVCEEKAP 294

Query: 288 LFGIGFVCDQEGNKFGTTWH 307
           +  +G+  D+ G  + TTW+
Sbjct: 295 VLSLGYNMDKTG-VWATTWN 313

Regulator of deubiquitinating complexes. Activates deubiquitination by increasing the catalytic turnover without increasing the affinity of deubiquitinating enzymes for the substrate.

Drosophila persimilis (taxid: 7234)

>sp|B8NG55|ASA1_ASPFN ASTRA-associated protein 1 OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) GN=asa1 PE=3 SV=1

 Score = 51.6 bits (122), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 97/255 (38%), Gaps = 41/255 (16%)

Query: 6   PPPDPVAVLRGHRASVTDV-CFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHG 64
           PP  P  +LRGH + +  +  FHQ    L +G   G + +WD V  R V+    H  A  
Sbjct: 9   PPASPTYILRGHASPIHGLHIFHQNLR-LISGDADGWIIVWDLVFKRPVAVWKAHEGAIL 67

Query: 65  IVSVATGPSIGLNKVISQGRDGTVKCW----------------DI--ENGGLSSNPSL-- 104
            V   T  +  + +V + GRD  +  W                DI  +N   ++ P L  
Sbjct: 68  EVKGFTFSNQTVTEVYTHGRDHKLCVWRFRAQDEDLLQKTLPVDISEQNQSQATQPWLVH 127

Query: 105 TIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM 164
           ++  N+ +FC  S++      +    EP         E  D  S      + P     + 
Sbjct: 128 SLPVNALNFCAFSMLFLDEEESPDTGEP---------EASDKTSTQSPGKNPPQHHSLFA 178

Query: 165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNV 224
                    ++I+ L    R   +        P   +   GM MAV  +  S  + ++  
Sbjct: 179 VPNALNSGAIDIFHLPRERRLCTI--------PADQTTQTGMVMAVTLFYSSTRELYIA- 229

Query: 225 LAGYEDGSILVWDIR 239
            + YEDG ++V+ +R
Sbjct: 230 -SAYEDGHVMVFALR 243

Component of the ASTRA complex involved in chromatin remodeling.

Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) (taxid: 332952)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	314
359492190	382	PREDICTED: guanine nucleotide-binding pr	0.898	0.738	0.666	1e-109
224104761	387	predicted protein [Populus trichocarpa]	0.901	0.731	0.654	1e-105
255562629	441	conserved hypothetical protein [Ricinus	0.901	0.641	0.627	1e-101
449449559	383	PREDICTED: guanine nucleotide-binding pr	0.901	0.738	0.604	1e-96
297799000	386	EMB2757 [Arabidopsis lyrata subsp. lyrat	0.901	0.733	0.6	2e-96
42567255	386	transducin/WD40 domain-containing protei	0.904	0.735	0.597	2e-95
323511860	375	decreased size exclusion limit 1 [Nicoti	0.891	0.746	0.629	4e-95
356517988	387	PREDICTED: ASTRA-associated protein 1-li	0.904	0.733	0.571	2e-93
357466905	285	Guanine nucleotide-binding protein subun	0.888	0.978	0.581	5e-90
357466903	364	Guanine nucleotide-binding protein subun	0.875	0.755	0.585	3e-89

>gi|359492190|ref|XP_002278969.2| PREDICTED: guanine nucleotide-binding protein subunit beta-like protein 1 homolog [Vitis vinifera] gi|302142603|emb|CBI19806.3| unnamed protein product [Vitis vinifera]

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 196/294 (66%), Positives = 236/294 (80%), Gaps = 12/294 (4%)

Query: 1   MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
           MSKRPPP DPVAVLRGHRASVTDVCFH +  ILF G++ GELRIWDTVQHRTVSS+WVHS
Sbjct: 1   MSKRPPP-DPVAVLRGHRASVTDVCFHPSNSILFTGSSDGELRIWDTVQHRTVSSAWVHS 59

Query: 61  AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
           AAHG+V VA  P IG NK++SQGRDGTVK WDIE GGLS +PSLTIKTN+YHFCKLSL+K
Sbjct: 60  AAHGVVCVAASPLIGDNKLVSQGRDGTVKYWDIEEGGLSRSPSLTIKTNAYHFCKLSLMK 119

Query: 121 EPYANAKQANEPKDCYEREVGETVDTDSLCDS-----------KDDVPAEGPKYMAVAGE 169
           +P A A+QA  PK  ++ +V +TVD + L DS            D   AEGPKY+A+AGE
Sbjct: 120 KPCACARQAEGPKHYHDMDVKDTVDAEMLNDSSGKAQESLTECSDAAHAEGPKYVAIAGE 179

Query: 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE 229
           Q SEVEIWDLNTAER  +L Q   GGS N+ +K RGMCMAVQA+LPS+SQGF+N+L+GYE
Sbjct: 180 QSSEVEIWDLNTAERIAQLPQKCLGGSSNYCTKSRGMCMAVQAFLPSESQGFLNILSGYE 239

Query: 230 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH 283
           DG+++ WDIRNPGIP+T++K HLEP+L + +D SC+GGISG AD KIV++ LD+
Sbjct: 240 DGTMVWWDIRNPGIPITSVKFHLEPILSICLDGSCSGGISGAADNKIVIFGLDN 293

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104761|ref|XP_002313556.1| predicted protein [Populus trichocarpa] gi|222849964|gb|EEE87511.1| predicted protein [Populus trichocarpa]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 195/298 (65%), Positives = 229/298 (76%), Gaps = 15/298 (5%)

Query: 1   MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
           MSKRP P DPVAVLRGHRASV D  FH +KP+LF G+T GELRIWDTVQHRTVSSS VHS
Sbjct: 1   MSKRPAP-DPVAVLRGHRASVMDASFHPSKPLLFTGSTDGELRIWDTVQHRTVSSSRVHS 59

Query: 61  AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
           AAHGI+SVA  P IG NKVISQGRDGTVKCWDI+NGGLS  PSLTIKTN+YHFCKLSLVK
Sbjct: 60  AAHGIISVAASPLIGDNKVISQGRDGTVKCWDIDNGGLSREPSLTIKTNAYHFCKLSLVK 119

Query: 121 EPYANAKQANEPKDCYEREVGETVDTDSL--------------CDSKDDVPAEGPKYMAV 166
           +P ++ +Q   P   +E++  ETVDT+SL               +  +D+ A+G KY+AV
Sbjct: 120 KPNSSVRQGEGPNYKHEKDDTETVDTNSLGNKGINYEEDPVECSNPLEDLHADGSKYIAV 179

Query: 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA 226
           AGEQ SEVEIWDLNTAER  RL Q+  GGS N S+  RGMCMAVQA+LPS+SQGF+ +L 
Sbjct: 180 AGEQSSEVEIWDLNTAERLARLPQSCIGGSSNISTNKRGMCMAVQAFLPSESQGFLYILV 239

Query: 227 GYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS 284
           GYEDGS+L+WD+RNPG  + ++K H EPVL L +D  C+GGISG AD KI LY+LD S
Sbjct: 240 GYEDGSMLLWDMRNPGAFVNSVKFHTEPVLSLCVDGLCSGGISGAADDKIALYSLDVS 297

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562629|ref|XP_002522320.1| conserved hypothetical protein [Ricinus communis] gi|223538398|gb|EEF40004.1| conserved hypothetical protein [Ricinus communis]

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 187/298 (62%), Positives = 226/298 (75%), Gaps = 15/298 (5%)

Query: 1   MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
           M KRPPPPDP+ VLRGHRASVTD CFH +KPILF G+  GELRIWDTVQHRT+SS+WVHS
Sbjct: 1   MIKRPPPPDPITVLRGHRASVTDACFHPSKPILFTGSADGELRIWDTVQHRTISSAWVHS 60

Query: 61  AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
           AAHGI+S+A+    G +KVISQG+DGTVK WDI+ GGLS  P +TI+TNSYHFCKLSLVK
Sbjct: 61  AAHGIISIASCNLNGNDKVISQGKDGTVKLWDIQEGGLSRVPVVTIRTNSYHFCKLSLVK 120

Query: 121 EPYANAKQANEPKDCYEREVGETVDTD-------------SLC--DSKDDVPAEGPKYMA 165
           +P         P   +E E  ETVDT+             S C  DS++D   +  K +A
Sbjct: 121 KPGDKVVHDKGPNHQHEIEALETVDTNVSYDRENRHNENSSKCSSDSEEDKHIDVLKCVA 180

Query: 166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL 225
           +AGEQ SEVEIWDLNTAER +RL QN  GGS + +++ RGMCMAVQA+LPS+SQGF+N+L
Sbjct: 181 IAGEQSSEVEIWDLNTAERISRLAQNCSGGSSSITTQKRGMCMAVQAFLPSESQGFLNLL 240

Query: 226 AGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH 283
           AGYEDGS+L WD+R+PG+PLT++K H EPVL L ID  C GGISG AD KIVL++LD+
Sbjct: 241 AGYEDGSMLWWDMRSPGVPLTSVKFHTEPVLSLCIDGWCTGGISGAADDKIVLFSLDN 298

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449559|ref|XP_004142532.1| PREDICTED: guanine nucleotide-binding protein subunit beta-like protein 1 homolog [Cucumis sativus] gi|449511779|ref|XP_004164051.1| PREDICTED: guanine nucleotide-binding protein subunit beta-like protein 1 homolog [Cucumis sativus]

 Score =  359 bits (921), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 179/296 (60%), Positives = 224/296 (75%), Gaps = 13/296 (4%)

Query: 1   MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
           MSKRPPP DPVAVLRGHRASV DV FH ++P+LF+G+  GELRIWDT Q+RTVSS+WVHS
Sbjct: 1   MSKRPPP-DPVAVLRGHRASVMDVSFHPSEPLLFSGSADGELRIWDTAQNRTVSSAWVHS 59

Query: 61  AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
           AAHGI+SVA   SIG N+V+SQGRDGTVKCWDI++  LS  P+++IKTN+YHFCKLSLVK
Sbjct: 60  AAHGIISVACSRSIGTNRVVSQGRDGTVKCWDIDDRTLSRVPTVSIKTNAYHFCKLSLVK 119

Query: 121 EPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDV-----------PAEGPKYMAVAGE 169
           +P ++    N+  +C      + V+   L  S D               +G KY+AV+GE
Sbjct: 120 QP-SDFSSHNDGPNCINDRDEKPVEATILGCSGDKAQGISTEHSYRSEVDGLKYVAVSGE 178

Query: 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE 229
           Q SEVEIWDLN  ER  RL  NS G  PN S+K RG+CMAVQA+LPSKSQGF+NVL+GYE
Sbjct: 179 QSSEVEIWDLNAGERLLRLPPNSEGDCPNISTKDRGLCMAVQAFLPSKSQGFLNVLSGYE 238

Query: 230 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST 285
           DGS+L WD+RNP +PL ++K H+EPVL + +D SC+G ISG AD+K+V+++LDHST
Sbjct: 239 DGSMLWWDLRNPRVPLASVKCHVEPVLSICVDGSCHGAISGAADEKVVMFSLDHST 294

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297799000|ref|XP_002867384.1| EMB2757 [Arabidopsis lyrata subsp. lyrata] gi|297313220|gb|EFH43643.1| EMB2757 [Arabidopsis lyrata subsp. lyrata]

 Score =  358 bits (919), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 177/295 (60%), Positives = 225/295 (76%), Gaps = 12/295 (4%)

Query: 1   MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
           MSKRPPP DPVAVLRGHR SV DV FH +KP+LF G+  GELRIWDT+QHR VSS+W HS
Sbjct: 1   MSKRPPP-DPVAVLRGHRHSVMDVSFHPSKPLLFTGSADGELRIWDTIQHRAVSSAWAHS 59

Query: 61  AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
            A+G+++VA  P +G NK+ISQGRDGTVKCWDIE+GGLS +P L ++T++YHFCK SLVK
Sbjct: 60  RANGVLAVAASPWLGENKIISQGRDGTVKCWDIEDGGLSRDPLLILETSAYHFCKFSLVK 119

Query: 121 EPYANAKQA-NEPKDCYEREVGETVDTDSLCDSKDDVP----------AEGPKYMAVAGE 169
           +P  + ++A +  ++C E++ G+T       DS+  V           AEG  ++AV GE
Sbjct: 120 KPKTSLQEAVSHLQNCDEQDDGDTRSVQLGDDSERSVEDSGLLQDGDHAEGTTFVAVVGE 179

Query: 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE 229
           Q +EVEIWD+NT ++  +L Q+S   SPN S+KGRGMCMAVQ + P +SQGF++VLAGYE
Sbjct: 180 QPTEVEIWDINTGDKIIQLPQSSLDESPNASTKGRGMCMAVQLFCPPESQGFLHVLAGYE 239

Query: 230 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS 284
           DGS+L+WDIRN  IPLT++K H EPVL LSI  SC+GGISGGAD KIV+YNL+HS
Sbjct: 240 DGSMLLWDIRNAKIPLTSVKFHSEPVLSLSIASSCDGGISGGADDKIVMYNLNHS 294

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42567255|ref|NP_194715.2| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|75674124|dbj|BAE44475.1| WD repeat protein [Arabidopsis thaliana] gi|332660286|gb|AEE85686.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana]

 Score =  355 bits (910), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 177/296 (59%), Positives = 224/296 (75%), Gaps = 12/296 (4%)

Query: 1   MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
           MSKRPPP DPVAVLRGHR SV DV FH +K +LF G+  GELRIWDT+QHR VSS+W HS
Sbjct: 1   MSKRPPP-DPVAVLRGHRHSVMDVSFHPSKSLLFTGSADGELRIWDTIQHRAVSSAWAHS 59

Query: 61  AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
            A+G+++VA  P +G +K+ISQGRDGTVKCWDIE+GGLS +P L ++T +YHFCK SLVK
Sbjct: 60  RANGVLAVAASPWLGEDKIISQGRDGTVKCWDIEDGGLSRDPLLILETCAYHFCKFSLVK 119

Query: 121 EPYANAKQA-NEPKDCYEREVGETVDTDSLCDS----------KDDVPAEGPKYMAVAGE 169
           +P  + ++A +  + C E++ G+T +     DS          +D   AEG  ++AV GE
Sbjct: 120 KPKNSLQEAESHSRGCDEQDGGDTCNVQIADDSERSEEDSGLLQDKDHAEGTTFVAVVGE 179

Query: 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE 229
           Q +EVEIWDLNT ++  +L Q+S   SPN S+KGRGMCMAVQ + P +SQGF++VLAGYE
Sbjct: 180 QPTEVEIWDLNTGDKIIQLPQSSPDESPNASTKGRGMCMAVQLFCPPESQGFLHVLAGYE 239

Query: 230 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST 285
           DGSIL+WDIRN  IPLT++K H EPVL LS+  SC+GGISGGAD KIV+YNL+HST
Sbjct: 240 DGSILLWDIRNAKIPLTSVKFHSEPVLSLSVASSCDGGISGGADDKIVMYNLNHST 295

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|323511860|gb|ADX87418.1| decreased size exclusion limit 1 [Nicotiana benthamiana]

 Score =  353 bits (907), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 182/289 (62%), Positives = 217/289 (75%), Gaps = 9/289 (3%)

Query: 1   MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
           MSKRP P DPV+VLRGHRASV D+CFH +  ILF+G+T GELRIW+TVQ+RTVSS+WVHS
Sbjct: 1   MSKRPAP-DPVSVLRGHRASVADICFHPSNSILFSGSTDGELRIWNTVQYRTVSSAWVHS 59

Query: 61  AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
           AAHGI+ VA  P +G NKVISQGRDGTVKCWD   GGLS  P LTIKTNSYHFCKLS+ K
Sbjct: 60  AAHGIICVAASPVLGDNKVISQGRDGTVKCWDFGGGGLSRTPLLTIKTNSYHFCKLSIAK 119

Query: 121 EPYANAK----QANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI 176
            P    K    + NE  D  +RE      TDS+   K     EGPKY+A+AGEQ S VEI
Sbjct: 120 SPSEAMKIDDLEVNEIVDGMQREEQGDQPTDSI-KFKGKELIEGPKYVAIAGEQASVVEI 178

Query: 177 WDLNTAERCTRLHQNSCGGSP-NFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV 235
           WD+NTAER  +L  +S  GSP N +   RGMCMAVQA+LPS+SQG ++++AGYEDGSI  
Sbjct: 179 WDVNTAERIAQLPHSS--GSPSNQTPNQRGMCMAVQAFLPSESQGLLSIMAGYEDGSIAW 236

Query: 236 WDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS 284
           WD+RN G+PLT++K H EPVL L ID SC GG+SG AD+KI+++ LDHS
Sbjct: 237 WDLRNLGVPLTSVKFHSEPVLSLCIDGSCKGGLSGAADEKILMFALDHS 285

Source: Nicotiana benthamiana

Species: Nicotiana benthamiana

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517988|ref|XP_003527666.1| PREDICTED: ASTRA-associated protein 1-like [Glycine max]

 Score =  348 bits (893), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 171/299 (57%), Positives = 223/299 (74%), Gaps = 15/299 (5%)

Query: 1   MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
           MS+RPPP DPVAVLRGHRASVTD+ FH +KPILF+G+  GE+RIWDT+QHRTVSS+W+HS
Sbjct: 1   MSRRPPP-DPVAVLRGHRASVTDISFHPSKPILFSGSADGEVRIWDTLQHRTVSSAWLHS 59

Query: 61  AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
           AAHGIV+VA   S+G NK +SQGRDGTVK W++ + GLS  P LTIKTN+YHFCK S+VK
Sbjct: 60  AAHGIVAVAGSSSLGNNKFVSQGRDGTVKVWELGDAGLSRIPVLTIKTNTYHFCKFSMVK 119

Query: 121 EPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPA--------------EGPKYMAV 166
           +    +K+    +D Y  E+G   D + L D +++                 EG +Y+A+
Sbjct: 120 KHSVWSKEGKASEDSYRSELGGVPDREILEDRREEAYTNQSCSESFGENMYNEGLQYVAL 179

Query: 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA 226
           +GE+ SEVEIWDL +AE+  +L  ++   S +  +KGRGMCMA+Q +LPS+SQGF+NVLA
Sbjct: 180 SGEKSSEVEIWDLKSAEKVVQLPSSNPSNSSSPCNKGRGMCMALQLFLPSESQGFLNVLA 239

Query: 227 GYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST 285
           GYEDGS+L WD+RNPG+P+T++K H EPVL +  D SC GGISG AD KIV+Y+LDHS+
Sbjct: 240 GYEDGSMLWWDVRNPGVPVTSVKFHSEPVLSVCNDGSCKGGISGAADDKIVMYSLDHSS 298

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357466905|ref|XP_003603737.1| Guanine nucleotide-binding protein subunit beta-like protein-like protein [Medicago truncatula] gi|355492785|gb|AES73988.1| Guanine nucleotide-binding protein subunit beta-like protein-like protein [Medicago truncatula]

 Score =  337 bits (864), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 168/289 (58%), Positives = 214/289 (74%), Gaps = 10/289 (3%)

Query: 1   MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
           MSKR  P DPVAVLRGHRASVTD+CFH +KPILF+G+  GELRIWDT + +T+SS+W+HS
Sbjct: 1   MSKRAAP-DPVAVLRGHRASVTDICFHPSKPILFSGSADGELRIWDTFRRQTLSSAWLHS 59

Query: 61  AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
           AAHGI+++A+  S+G NK +SQGRDGTVK WD ++ GLS  PS+TIKTNSYHFCK SL K
Sbjct: 60  AAHGILALASSSSLGTNKFVSQGRDGTVKVWDFDDTGLSRIPSVTIKTNSYHFCKFSLAK 119

Query: 121 EPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLN 180
                +K     KDC E    E V T+  C       +EG  Y+A++GE  SEVEIWDL 
Sbjct: 120 NQSTGSKAGEASKDCLET---EEVHTNQSCSES----SEGLSYVALSGENSSEVEIWDLK 172

Query: 181 TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240
           +AER  RL  +    S + SSK  GMCMA+Q  +PS+SQGF+NV+AGYEDG++L WD+RN
Sbjct: 173 SAERFARLPSSIGSNSSSVSSK--GMCMALQLCVPSESQGFLNVMAGYEDGTMLWWDVRN 230

Query: 241 PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF 289
           PG+P++++K H EPVL + ID SC GGISG AD++IV+Y+LDHS+   F
Sbjct: 231 PGVPVSSVKFHSEPVLSIGIDGSCKGGISGAADERIVMYSLDHSSVTSF 279

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357466903|ref|XP_003603736.1| Guanine nucleotide-binding protein subunit beta-like protein-like protein [Medicago truncatula] gi|355492784|gb|AES73987.1| Guanine nucleotide-binding protein subunit beta-like protein-like protein [Medicago truncatula]

 Score =  334 bits (857), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 167/285 (58%), Positives = 213/285 (74%), Gaps = 10/285 (3%)

Query: 1   MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
           MSKR  P DPVAVLRGHRASVTD+CFH +KPILF+G+  GELRIWDT + +T+SS+W+HS
Sbjct: 1   MSKRAAP-DPVAVLRGHRASVTDICFHPSKPILFSGSADGELRIWDTFRRQTLSSAWLHS 59

Query: 61  AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
           AAHGI+++A+  S+G NK +SQGRDGTVK WD ++ GLS  PS+TIKTNSYHFCK SL K
Sbjct: 60  AAHGILALASSSSLGTNKFVSQGRDGTVKVWDFDDTGLSRIPSVTIKTNSYHFCKFSLAK 119

Query: 121 EPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLN 180
                +K     KDC E    E V T+  C       +EG  Y+A++GE  SEVEIWDL 
Sbjct: 120 NQSTGSKAGEASKDCLET---EEVHTNQSCSES----SEGLSYVALSGENSSEVEIWDLK 172

Query: 181 TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240
           +AER  RL  +    S + SSK  GMCMA+Q  +PS+SQGF+NV+AGYEDG++L WD+RN
Sbjct: 173 SAERFARLPSSIGSNSSSVSSK--GMCMALQLCVPSESQGFLNVMAGYEDGTMLWWDVRN 230

Query: 241 PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST 285
           PG+P++++K H EPVL + ID SC GGISG AD++IV+Y+LDHS+
Sbjct: 231 PGVPVSSVKFHSEPVLSIGIDGSCKGGISGAADERIVMYSLDHSS 275

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	314
TAIR|locus:2123869	386	EMB2757 "AT4G29860" [Arabidops	0.904	0.735	0.597	4.5e-91
DICTYBASE|DDB_G0289181	359	gnb1l "guanine nucleotide-bind	0.347	0.303	0.314	4e-23
ZFIN|ZDB-GENE-050320-77	323	gnb1l "guanine nucleotide bind	0.464	0.452	0.300	1.6e-18
MGI|MGI:1338057	326	Gnb1l "guanine nucleotide bind	0.627	0.604	0.273	6.1e-12
RGD|1594165	326	Gnb1l "guanine nucleotide bind	0.627	0.604	0.264	2.9e-11
UNIPROTKB|F1NF00	328	GNB1L "Uncharacterized protein	0.621	0.594	0.286	3.3e-11
UNIPROTKB|Q9BYB4	327	GNB1L "Guanine nucleotide-bind	0.627	0.602	0.269	1.3e-08
SGD|S000004951	303	LST8 "Protein required for the	0.436	0.452	0.287	3.4e-07
UNIPROTKB|F1MBU4	321	GNB1L "Uncharacterized protein	0.423	0.414	0.303	5.2e-07
UNIPROTKB|F1RK57	293	GNB1L "Uncharacterized protein	0.382	0.409	0.290	5.9e-06

TAIR|locus:2123869 EMB2757 "AT4G29860" [Arabidopsis thaliana (taxid:3702)]

 Score = 908 (324.7 bits), Expect = 4.5e-91, P = 4.5e-91
 Identities = 177/296 (59%), Positives = 224/296 (75%)

Query:     1 MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
             MSKRPPP DPVAVLRGHR SV DV FH +K +LF G+  GELRIWDT+QHR VSS+W HS
Sbjct:     1 MSKRPPP-DPVAVLRGHRHSVMDVSFHPSKSLLFTGSADGELRIWDTIQHRAVSSAWAHS 59

Query:    61 AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
              A+G+++VA  P +G +K+ISQGRDGTVKCWDIE+GGLS +P L ++T +YHFCK SLVK
Sbjct:    60 RANGVLAVAASPWLGEDKIISQGRDGTVKCWDIEDGGLSRDPLLILETCAYHFCKFSLVK 119

Query:   121 EPYANAKQA-NEPKDCYEREVGETVDTDSLCDSK----------DDVPAEGPKYMAVAGE 169
             +P  + ++A +  + C E++ G+T +     DS+          D   AEG  ++AV GE
Sbjct:   120 KPKNSLQEAESHSRGCDEQDGGDTCNVQIADDSERSEEDSGLLQDKDHAEGTTFVAVVGE 179

Query:   170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE 229
             Q +EVEIWDLNT ++  +L Q+S   SPN S+KGRGMCMAVQ + P +SQGF++VLAGYE
Sbjct:   180 QPTEVEIWDLNTGDKIIQLPQSSPDESPNASTKGRGMCMAVQLFCPPESQGFLHVLAGYE 239

Query:   230 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST 285
             DGSIL+WDIRN  IPLT++K H EPVL LS+  SC+GGISGGAD KIV+YNL+HST
Sbjct:   240 DGSILLWDIRNAKIPLTSVKFHSEPVLSLSVASSCDGGISGGADDKIVMYNLNHST 295

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0009790 "embryo development" evidence=IMP

GO:0048700 "acquisition of desiccation tolerance in seed" evidence=IMP

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

DICTYBASE|DDB_G0289181 gnb1l "guanine nucleotide-binding protein subunit beta-like protein 1" [Dictyostelium discoideum (taxid:44689)]

 Score = 177 (67.4 bits), Expect = 4.0e-23, Sum P(2) = 4.0e-23
 Identities = 38/121 (31%), Positives = 66/121 (54%)

Query:   172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSK-------SQGFVNV 224
             S+VEIWDL   +   +L  N+         K  G+ M+++ Y  ++       S   + +
Sbjct:   156 SQVEIWDLKNKQVINKLKPNN----QQLFEK-LGLPMSLKLYYENENNDNSNQSNDQIRL 210

Query:   225 LAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS 284
               GYE+G +L+WD+RN  IPL + K+H EP+L  ++  +   GISG  D  I+ +N+++ 
Sbjct:   211 CTGYENGELLIWDLRNTSIPLVSSKLHNEPILSFALSNNSTKGISGSGDTNIIEFNINYE 270

Query:   285 T 285
             +
Sbjct:   271 S 271

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

ZFIN|ZDB-GENE-050320-77 gnb1l "guanine nucleotide binding protein (G protein), beta polypeptide 1-like" [Danio rerio (taxid:7955)]

 Score = 155 (59.6 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
 Identities = 46/153 (30%), Positives = 71/153 (46%)

Query:     6 PPPDPVAVLRGHRASVTDV---CFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAA 62
             PPPDP+ +LRG  ASV  +   C     P+L++G+  G + +W+    R       H A 
Sbjct:     4 PPPDPLYILRGSGASVNALHFCCDGDGPPLLYSGSGKGAVHVWNLSTRRAERVLESH-AG 62

Query:    63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEP 122
             + ++ + T  +   + +ISQGRD  V  WD+  G  +   SL   T S  FC+ SL+   
Sbjct:    63 NSVIWLNTFNN-SRSCLISQGRDMRVCVWDLSEGRSAVTDSL--HTGSVGFCQCSLLGSR 119

Query:   123 YANAKQANEPKDCYEREVGETVDTDSLCDSKDD 155
               +   A+  +   E  V E      +C  K D
Sbjct:   120 LGSTLLAHPTQHMEEVSVVEMSSWTQVCSLKPD 152

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

MGI|MGI:1338057 Gnb1l "guanine nucleotide binding protein (G protein), beta polypeptide 1-like" [Mus musculus (taxid:10090)]

 Score = 164 (62.8 bits), Expect = 6.1e-12, Sum P(2) = 6.1e-12
 Identities = 61/223 (27%), Positives = 105/223 (47%)

Query:     5 PPPPDPVAVLRGHRASVTDVCF---HQT--KPILFAGTTGGELRIWDTVQHRTVSSSWVH 59
             PPPP P  VLRG +++V  + F    Q    P+LF+G+  G + IW     R V++   H
Sbjct:     6 PPPPGPRFVLRGTQSAVNTLHFCPPSQAAGNPLLFSGSQNGLVHIWSLQTRRIVTTLNGH 65

Query:    60 SAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLV 119
                 G++ + T P  G ++++SQGRD  +  WD+E G  +   S  ++ +S  FC+ S++
Sbjct:    66 GG-QGVIWLKTLPQ-G-HQLLSQGRDLRLCLWDLEEGRNTIMDS--VQLDSVGFCRGSIL 120

Query:   120 KEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAE-G-P------------KYMA 165
                      A   K   E ++ E     S+C  K +  A  G P            + + 
Sbjct:   121 VRGQQCWMLAVPGKGSDEVQILEMPSKTSVCTLKPEADARPGMPMCLGLWQTNSSLRPLL 180

Query:   166 VAGEQLSEVEIWDLNTAERCTRL--HQNSCGGSPNFSSKGRGM 206
             +AG +   V +WD++  + C+++  H+    G    S K +G+
Sbjct:   181 LAGYEDGSVTLWDISERKVCSQITCHEEPVMGLDFDSQKAKGI 223

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IDA

GO:0035176 "social behavior" evidence=IMP

RGD|1594165 Gnb1l "guanine nucleotide binding protein (G protein), beta polypeptide 1-like" [Rattus norvegicus (taxid:10116)]

 Score = 162 (62.1 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
 Identities = 59/223 (26%), Positives = 101/223 (45%)

Query:     5 PPPPDPVAVLRGHRASVTDVCFHQT-----KPILFAGTTGGELRIWDTVQHRTVSSSWVH 59
             PPPP P  VLRG +++V  + F         P+LF+G+  G + IW     R V++   H
Sbjct:     6 PPPPSPRFVLRGTQSAVNTLHFCPAPGAAENPLLFSGSQNGLVHIWSLQTRRIVATLNGH 65

Query:    60 SAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLV 119
                 G+  + T P  G  +++SQGRD  +  WD+  G  +   S  ++ +S  FCK S++
Sbjct:    66 GG-QGVTWLKTLPQ-G-QQLLSQGRDPRLCLWDLAEGRNTVMDS--VQLDSVGFCKSSIL 120

Query:   120 KEPYANAKQANEPKDCYEREVGETVDTDSLC------DSKDDVPA--------EGPKYMA 165
                      A   K   E ++ E     S+C      D+K  +P            + + 
Sbjct:   121 VRGQLCWMLAVPGKGSDEVQILEMPSKTSVCTLKPEADAKPGMPMCLGLWQTNSSLRPLL 180

Query:   166 VAGEQLSEVEIWDLNTAERCTRL--HQNSCGGSPNFSSKGRGM 206
             +AG +   V +WD++  + C+++  H+    G    S K +G+
Sbjct:   181 LAGYEDGSVTLWDVSERKVCSQITCHEEPVMGLDFDSQKAKGV 223

GO:0005737 "cytoplasm" evidence=ISO

GO:0035176 "social behavior" evidence=ISO

UNIPROTKB|F1NF00 GNB1L "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 176 (67.0 bits), Expect = 3.3e-11, P = 3.3e-11
 Identities = 64/223 (28%), Positives = 100/223 (44%)

Query:     6 PPPDPVAVLRGHRASVTDVCF-----HQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
             PPPDP  VLRG  A+V  + F         P+LF+G+  G + +W+   HR  ++     
Sbjct:     4 PPPDPHFVLRGTGAAVHALHFSCGGGEPDIPVLFSGSENGFIHVWNLKTHRVDAAL---- 59

Query:    61 AAHGIVSVATGPSI-GLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLV 119
               HG  SV    ++ G  +++SQGRD  +  WD+  G  S   S  + T +  FC+ SL+
Sbjct:    60 DGHGRKSVCGLKTMDGKERLLSQGRDQRICLWDLAEGRTSVTDS--VFTENVGFCRCSLL 117

Query:   120 KEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAE--------------GPKYMA 165
             K        A   K   E +V E     S+C  K +V A+              G +   
Sbjct:   118 KVAEGRWLMATAAKALEEVQVLELPSKTSVCTLKPEVGAKLGMPMCLKLWQGSCGSQPSL 177

Query:   166 VAGEQLSEVEIWDLNTAERCTRL--HQNSCGGSPNFSSKGRGM 206
             +AG +   V +W+L+T +  ++L  HQ         S K +G+
Sbjct:   178 LAGYEDGSVLLWNLSTGKVLSQLICHQEPVMSLDFDSEKAKGI 220

GO:0005737 "cytoplasm" evidence=IEA

GO:0035176 "social behavior" evidence=IEA

UNIPROTKB|Q9BYB4 GNB1L "Guanine nucleotide-binding protein subunit beta-like protein 1" [Homo sapiens (taxid:9606)]

 Score = 154 (59.3 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 60/223 (26%), Positives = 103/223 (46%)

Query:     5 PPPPDPVAVLRGHRASVTDVCF-----HQTKPILFAGTTGGELRIWDTVQHRTVSSSWVH 59
             PPPPDP  VLRG ++ V  + F      Q +P+LF+G+  G + IW     R V++   H
Sbjct:     7 PPPPDPQFVLRGTQSPVHALHFCEGAQAQGRPLLFSGSQSGLVHIWSLQTRRAVTTLDGH 66

Query:    60 SAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLV 119
                  +  + T P  G  +++SQGRD  +  WD+  G  +   S+ ++  S  FC+ S++
Sbjct:    67 GG-QCVTWLQTLPQ-G-RQLLSQGRDLKLCLWDLAEGRSAVVDSVCLE--SVGFCRSSIL 121

Query:   120 KEPYANAKQANEPKDCYEREVGETVDTDSLC------DSKDDVP-------AE-GPKYMA 165
                      A   +   E ++ E     S+C      D+K  +P       A+   + + 
Sbjct:   122 AGGQPRWTLAVPGRGSDEVQILEMPSKTSVCALKPKADAKLGMPMCLRLWQADCSSRPLL 181

Query:   166 VAGEQLSEVEIWDLNTAERCTRL--HQNSCGGSPNFSSKGRGM 206
             +AG +   V +WD++  + C+R+  H+         S K RG+
Sbjct:   182 LAGYEDGSVVLWDVSEQKVCSRIACHEEPVMDLDFDSQKARGI 224

GO:0005737 "cytoplasm" evidence=IEA

GO:0035176 "social behavior" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=NAS

GO:0035556 "intracellular signal transduction" evidence=NAS

GO:0009898 "internal side of plasma membrane" evidence=NAS

SGD|S000004951 LST8 "Protein required for the transport of Gap1p to the cell surface" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 141 (54.7 bits), Expect = 3.4e-07, P = 3.4e-07
 Identities = 42/146 (28%), Positives = 69/146 (47%)

Query:     4 RPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAH 63
             R   P+PVA   GHR +VT V F Q    +   +  G +++WD V+  ++  ++ H+A  
Sbjct:    61 RTTNPNPVASFEGHRGNVTSVSFQQDNRWMVTSSEDGTIKVWD-VRSPSIPRNYKHNAP- 118

Query:    64 GIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY 123
              +  V   P+ G  ++IS  RDG ++ WD+  G       LT + ++     LS+  +  
Sbjct:   119 -VNEVVIHPNQG--ELISCDRDGNIRIWDL--GENQCTHQLTPEDDT-SLQSLSMASDGS 172

Query:   124 ANAKQANEPKDCYEREVGETVDTDSL 149
               A  AN   +CY  E+    D   L
Sbjct:   173 MLAA-ANTKGNCYVWEMPNHTDASHL 197

GO:0030950 "establishment or maintenance of actin cytoskeleton polarity" evidence=IMP

GO:0030295 "protein kinase activator activity" evidence=IMP

GO:0005886 "plasma membrane" evidence=IEA

GO:0005773 "vacuole" evidence=IEA

GO:0031234 "extrinsic to internal side of plasma membrane" evidence=IDA

GO:0001558 "regulation of cell growth" evidence=IPI

GO:0005774 "vacuolar membrane" evidence=IEA

GO:0007165 "signal transduction" evidence=IMP

GO:0010008 "endosome membrane" evidence=IDA

GO:0000139 "Golgi membrane" evidence=IDA

GO:0031505 "fungal-type cell wall organization" evidence=IMP

GO:0031929 "TOR signaling cascade" evidence=IC;IMP

GO:0016020 "membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0031930 "mitochondria-nucleus signaling pathway" evidence=IMP

GO:0031932 "TORC2 complex" evidence=IPI

GO:0031931 "TORC1 complex" evidence=IPI

GO:0006810 "transport" evidence=IMP

UNIPROTKB|F1MBU4 GNB1L "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 140 (54.3 bits), Expect = 5.2e-07, P = 5.2e-07
 Identities = 44/145 (30%), Positives = 78/145 (53%)

Query:   140 VGETVDTDSLCDSKDDVPAEGPK--YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSP 197
             V + V  +S+   +  V AEGP+   +AV G    EV++ +L +    T +   SC   P
Sbjct:    98 VVDAVHLESVGFCRASVLAEGPQRWMLAVPGRGSDEVQVLELPSK---TSV---SCL-KP 150

Query:   198 NFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLC 257
                ++  GM M +Q +    S   + +LAGYEDGS+ +WD+    +  + +  H EPV+ 
Sbjct:   151 EAGAR-LGMPMCLQLWQAESSPRPL-LLAGYEDGSLALWDVSARKV-CSRVACHSEPVMA 207

Query:   258 LSIDESCNGGISGGADQKIVLYNLD 282
             L++D     G+SG A++ + +++L+
Sbjct:   208 LALDPRRARGVSGSAEKVLAVWSLE 232

GO:0035176 "social behavior" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F1RK57 GNB1L "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 130 (50.8 bits), Expect = 5.9e-06, P = 5.9e-06
 Identities = 38/131 (29%), Positives = 66/131 (50%)

Query:   159 EGPKYMAVAGEQLSEVEIWDL----NTAERCTRLHQ-NSCGGSPNFSSKGRGMCMAVQAY 213
             +GP+ ++  G  L ++ +WDL    NT      L     C GS     + R M +AV   
Sbjct:    78 QGPQLLS-QGRDL-KLCLWDLAEGRNTVVDSVHLESVGFCRGSILAGGQPRWM-LAVPGS 134

Query:   214 LPSKSQGFVN--VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG 271
                ++       +LAGYEDGS+ +WD+    +  + +  H EPV+ L +D     G+SG 
Sbjct:   135 GSDEANSSPRPLLLAGYEDGSVALWDVSEQKV-CSRIACHTEPVMGLDVDSQKARGVSGS 193

Query:   272 ADQKIVLYNLD 282
             A++ + ++++D
Sbjct:   194 AEKALAVWSVD 204

GO:0035176 "social behavior" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	314
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-13
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-11
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-10
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-09
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-09
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-08
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-07
smart00320	40	smart00320, WD40, WD40 repeats	1e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-05

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 68.6 bits (166), Expect = 7e-13
 Identities = 58/278 (20%), Positives = 106/278 (38%), Gaps = 29/278 (10%)

Query: 14  LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATG-P 72
           LRGH  S+T + F     +L +G++ G +++WD      +  S        +  +A   P
Sbjct: 61  LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSP 120

Query: 73  SIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEP 132
                 + S   DGTVK WD+   G       T++ +S     L+   +    A  ++  
Sbjct: 121 DGNSILLASSSLDGTVKLWDLSTPGKLIR---TLEGHSESVTSLAFSPDGKLLASGSSLD 177

Query: 133 KDCYEREVGETVDTDSLCDSKDDV-----PAEGPKYMAVAGEQLSEVEIWDLNTAERC-T 186
                 ++       +L    D V       +G   +A      + + +WDL+T +   +
Sbjct: 178 GTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGT-IRLWDLSTGKLLRS 236

Query: 187 RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246
            L  +S     +FS  G                    + +G  DG+I +WD+R+    L 
Sbjct: 237 TLSGHSDSVVSSFSPDGS------------------LLASGSSDGTIRLWDLRSSSSLLR 278

Query: 247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS 284
            +  H   VL ++         SG +D  + L++L+  
Sbjct: 279 TLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETG 316

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 61.2 bits (149), Expect = 8e-11
 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 4/87 (4%)

Query: 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA 69
              L+GH   VT V F     +L  G+  G +++WD      + +   H+    +  VA
Sbjct: 1  LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHT--GPVRDVA 58

Query: 70 TGPSIGLNKVISQGRDGTVKCWDIENG 96
                   + S   D T++ WD+E G
Sbjct: 59 ASAD--GTYLASGSSDKTIRLWDLETG 83

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 59.7 bits (143), Expect = 5e-10
 Identities = 57/282 (20%), Positives = 107/282 (37%), Gaps = 32/282 (11%)

Query: 7   PPDPVAVLRGHRASVTDVCFHQTKPILFAG-TTGGELRIWDTVQHRTVSSSWVHSAAHGI 65
              P++ L GH   V+ + F     +L A  ++ G +R+WD     T        + H  
Sbjct: 187 TGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDL---STGKLLRSTLSGHSD 243

Query: 66  VSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN 125
             V++    G + + S   DGT++ WD+ +    S+   T+  +S     ++   +    
Sbjct: 244 SVVSSFSPDG-SLLASGSSDGTIRLWDLRSS---SSLLRTLSGHSSSVLSVAFSPDGKLL 299

Query: 126 AKQANEPKDC-YEREVGETVDTDSLCDSKDDVPA----EGPKYMAVAGEQLSEVEIWDLN 180
           A  +++     ++ E G+ + + +L   +  V +         +   G     + +WDL 
Sbjct: 300 ASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLR 359

Query: 181 TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240
           T +        +  G  N  S              S S     V +G  DG++ +WD+ +
Sbjct: 360 TGK-----PLKTLEGHSNVLSV-------------SFSPDGRVVSSGSTDGTVRLWDL-S 400

Query: 241 PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD 282
            G  L  +  H   V  L          SG +D  I L++L 
Sbjct: 401 TGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLK 442

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 56.2 bits (136), Expect = 4e-09
 Identities = 59/275 (21%), Positives = 103/275 (37%), Gaps = 70/275 (25%)

Query: 8   PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVS 67
            + V  L GH + V+ V F     IL + +    +++WD    + +++  +      + S
Sbjct: 83  GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTT--LRGHTDWVNS 140

Query: 68  VATGPSIGLNKVISQG-RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANA 126
           VA  P       ++   +DGT+K WD+  G         + T + H              
Sbjct: 141 VAFSPD---GTFVASSSQDGTIKLWDLRTGKC-------VATLTGH-------------- 176

Query: 127 KQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCT 186
                       EV      +S+  S D     G K ++ + +    +++WDL+T +   
Sbjct: 177 ----------TGEV------NSVAFSPD-----GEKLLSSSSD--GTIKLWDLSTGK--- 210

Query: 187 RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-EDGSILVWDIRNPGIPL 245
                +  G  N          +V A+ P        +LA   EDG+I VWD+R  G  +
Sbjct: 211 --CLGTLRGHENG-------VNSV-AFSPDG-----YLLASGSEDGTIRVWDLRT-GECV 254

Query: 246 TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN 280
             +  H   V  L+         SG AD  I +++
Sbjct: 255 QTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 55.4 bits (134), Expect = 9e-09
 Identities = 50/239 (20%), Positives = 76/239 (31%), Gaps = 79/239 (33%)

Query: 6   PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV-----SSSWVHS 60
                +  LRGH   V  V F      + + +  G +++WD    + V      +  V+S
Sbjct: 123 ETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNS 182

Query: 61  AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
            A          S    K++S   DGT+K WD+  G         + T   H        
Sbjct: 183 VA---------FSPDGEKLLSSSSDGTIKLWDLSTGKC-------LGTLRGH-------- 218

Query: 121 EPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLN 180
           E   N                      S+  S D         +A   E  + + +WDL 
Sbjct: 219 ENGVN----------------------SVAFSPDG------YLLASGSEDGT-IRVWDLR 249

Query: 181 TAERCTRL--HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 237
           T E    L  H NS               +A     P   +    + +G  DG+I +WD
Sbjct: 250 TGECVQTLSGHTNSVT------------SLAWS---PDGKR----LASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 54.3 bits (129), Expect = 3e-08
 Identities = 57/286 (19%), Positives = 98/286 (34%), Gaps = 39/286 (13%)

Query: 10  PVAVLRGHRASVTDVCFHQTKPILFAGTTG-GELRIWDTVQHRTVSSSWVHSAAHGIVSV 68
            +  L GH  SVT + F     +L +G++  G +++WD    + +S+   H+     VS 
Sbjct: 147 LIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHT---DPVSS 203

Query: 69  ATGPSIGLNKVISQGRDGTVKCWDIENGG-----LSSNPSLTIKTNSYHFCKLSLVKEPY 123
                 G   + S   DGT++ WD+  G      LS +    + + S     L+      
Sbjct: 204 LAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDG 263

Query: 124 A----NAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDL 179
                + + ++             +      D          K +A      + V +WDL
Sbjct: 264 TIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDG---------KLLASGSSDGT-VRLWDL 313

Query: 180 NTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239
            T             G    S   +G    V +   S     + V  G +DG+I +WD+R
Sbjct: 314 ET-------------GKLLSSLTLKGHEGPVSSLSFSPDGSLL-VSGGSDDGTIRLWDLR 359

Query: 240 NPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST 285
                 T         +  S D       SG  D  + L++L   +
Sbjct: 360 TGKPLKTLEGHSNVLSVSFSPDGRVVS--SGSTDGTVRLWDLSTGS 403

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 50.1 bits (118), Expect = 8e-07
 Identities = 47/229 (20%), Positives = 82/229 (35%), Gaps = 23/229 (10%)

Query: 13  VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT-VSSSWVHSAAHGIVSVATG 71
            L GH  SV    F     +L +G++ G +R+WD     + + +   HS    ++SVA  
Sbjct: 237 TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHS--SSVLSVAFS 293

Query: 72  PSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANE 131
           P      + S   DGTV+ WD+E G L S+ +L            S       +    + 
Sbjct: 294 PD--GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDG 351

Query: 132 PKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQN 191
               ++   G+ + T     +   V       +  +G     V +WDL+T      L   
Sbjct: 352 TIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNL--- 408

Query: 192 SCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240
                              +      S    ++ +G  D +I +WD++ 
Sbjct: 409 --------------DGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 41.1 bits (97), Expect = 1e-05
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWD 46
           +  L+GH   VT V F      L +G+  G +++WD
Sbjct: 4  LLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 40.0 bits (94), Expect = 4e-05
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWD 46
           +  L+GH   VT V F     +L +G+  G +R+WD
Sbjct: 3  LLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	314
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
PTZ00420	568	coronin; Provisional	99.98
KOG0266	456	consensus WD40 repeat-containing protein [General	99.98
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.98
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.97
KOG0296	399	consensus Angio-associated migratory cell protein	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
KOG0645	312	consensus WD40 repeat protein [General function pr	99.97
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.97
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.97
KOG0645	312	consensus WD40 repeat protein [General function pr	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.97
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.96
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.96
PLN00181	793	protein SPA1-RELATED; Provisional	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.95
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.95
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.95
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.95
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.95
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.95
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.95
KOG0641	350	consensus WD40 repeat protein [General function pr	99.95
KOG0289	506	consensus mRNA splicing factor [General function p	99.95
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.95
KOG0289	506	consensus mRNA splicing factor [General function p	99.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.95
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.95
PTZ00420	568	coronin; Provisional	99.95
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.95
KOG0646	476	consensus WD40 repeat protein [General function pr	99.94
PTZ00421	493	coronin; Provisional	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.94
KOG2096	420	consensus WD40 repeat protein [General function pr	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.94
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.94
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.94
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.94
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.93
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.93
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.93
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.93
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.93
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.93
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.93
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.93
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.93
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.93
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.93
KOG1273	405	consensus WD40 repeat protein [General function pr	99.92
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.92
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.92
KOG0267	825	consensus Microtubule severing protein katanin p80	99.92
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.92
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.92
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.92
KOG1539	910	consensus WD repeat protein [General function pred	99.92
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.92
KOG0641	350	consensus WD40 repeat protein [General function pr	99.92
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.91
KOG0267	825	consensus Microtubule severing protein katanin p80	99.91
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.91
KOG1274	933	consensus WD40 repeat protein [General function pr	99.91
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.91
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.91
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.9
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.9
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.9
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.9
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.9
KOG4328	498	consensus WD40 protein [Function unknown]	99.89
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.89
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.89
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.89
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.89
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.89
KOG0639	705	consensus Transducin-like enhancer of split protei	99.89
KOG2048	691	consensus WD40 repeat protein [General function pr	99.89
KOG0643	327	consensus Translation initiation factor 3, subunit	99.89
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.89
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.88
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.88
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.87
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.87
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.87
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.87
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.87
KOG0646	476	consensus WD40 repeat protein [General function pr	99.87
KOG0639	705	consensus Transducin-like enhancer of split protei	99.87
KOG2055	514	consensus WD40 repeat protein [General function pr	99.86
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.86
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.86
KOG1274	933	consensus WD40 repeat protein [General function pr	99.85
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.85
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.84
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.84
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.84
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.83
KOG1273	405	consensus WD40 repeat protein [General function pr	99.83
KOG1539	910	consensus WD repeat protein [General function pred	99.83
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.83
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.83
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.83
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.83
KOG1188	376	consensus WD40 repeat protein [General function pr	99.82
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.81
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.81
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.81
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.8
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.8
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.8
KOG2055	514	consensus WD40 repeat protein [General function pr	99.8
KOG2096	420	consensus WD40 repeat protein [General function pr	99.79
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.79
KOG1310	758	consensus WD40 repeat protein [General function pr	99.78
KOG1188	376	consensus WD40 repeat protein [General function pr	99.78
KOG4227	609	consensus WD40 repeat protein [General function pr	99.77
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.77
KOG0649	325	consensus WD40 repeat protein [General function pr	99.77
PRK11028	330	6-phosphogluconolactonase; Provisional	99.76
KOG2048	691	consensus WD40 repeat protein [General function pr	99.76
KOG0649	325	consensus WD40 repeat protein [General function pr	99.75
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.74
KOG4328	498	consensus WD40 protein [Function unknown]	99.74
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.74
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.74
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.74
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.73
KOG1963	792	consensus WD40 repeat protein [General function pr	99.73
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.73
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.73
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.73
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.72
PRK01742	429	tolB translocation protein TolB; Provisional	99.72
COG2319	466	FOG: WD40 repeat [General function prediction only	99.72
KOG4227	609	consensus WD40 repeat protein [General function pr	99.71
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.7
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.7
COG2319	466	FOG: WD40 repeat [General function prediction only	99.69
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.69
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.68
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.68
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.66
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.66
PRK11028	330	6-phosphogluconolactonase; Provisional	99.65
KOG1334	559	consensus WD40 repeat protein [General function pr	99.65
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.65
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.63
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.63
KOG1963	792	consensus WD40 repeat protein [General function pr	99.63
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.63
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.62
KOG2321	703	consensus WD40 repeat protein [General function pr	99.61
PRK03629	429	tolB translocation protein TolB; Provisional	99.6
PRK05137	435	tolB translocation protein TolB; Provisional	99.59
PRK01742	429	tolB translocation protein TolB; Provisional	99.59
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.58
PRK04922	433	tolB translocation protein TolB; Provisional	99.58
PRK02889	427	tolB translocation protein TolB; Provisional	99.57
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.57
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.56
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.54
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.53
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.5
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.5
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.49
KOG2139	445	consensus WD40 repeat protein [General function pr	99.48
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.48
KOG2139	445	consensus WD40 repeat protein [General function pr	99.48
PRK02889	427	tolB translocation protein TolB; Provisional	99.47
PRK03629	429	tolB translocation protein TolB; Provisional	99.46
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.45
PRK05137	435	tolB translocation protein TolB; Provisional	99.45
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.45
PRK00178	430	tolB translocation protein TolB; Provisional	99.44
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.44
PRK04922	433	tolB translocation protein TolB; Provisional	99.44
KOG1310	758	consensus WD40 repeat protein [General function pr	99.43
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.42
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.42
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.4
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.4
PRK04792	448	tolB translocation protein TolB; Provisional	99.38
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.37
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.36
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.33
KOG4547	541	consensus WD40 repeat-containing protein [General	99.32
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.32
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.32
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.31
PRK01029	428	tolB translocation protein TolB; Provisional	99.31
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.3
KOG2315	566	consensus Predicted translation initiation factor	99.28
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.28
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.27
KOG2321	703	consensus WD40 repeat protein [General function pr	99.27
KOG2315	566	consensus Predicted translation initiation factor	99.24
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.23
PRK04792	448	tolB translocation protein TolB; Provisional	99.23
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.23
PRK00178	430	tolB translocation protein TolB; Provisional	99.21
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.2
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.17
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.17
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.16
KOG1334	559	consensus WD40 repeat protein [General function pr	99.15
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.13
KOG2314	698	consensus Translation initiation factor 3, subunit	99.12
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.11
KOG4547	541	consensus WD40 repeat-containing protein [General	99.11
PRK04043	419	tolB translocation protein TolB; Provisional	99.08
PRK01029	428	tolB translocation protein TolB; Provisional	99.07
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.06
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.06
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.05
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.05
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.04
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.04
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.04
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.03
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.02
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.02
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.01
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.98
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.97
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.97
COG4946	668	Uncharacterized protein related to the periplasmic	98.97
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.95
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.93
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.92
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.91
KOG2314	698	consensus Translation initiation factor 3, subunit	98.87
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.85
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.84
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.83
COG4946	668	Uncharacterized protein related to the periplasmic	98.82
KOG2695	425	consensus WD40 repeat protein [General function pr	98.81
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.8
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.8
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.8
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.76
PRK04043	419	tolB translocation protein TolB; Provisional	98.75
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.73
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.73
KOG2695	425	consensus WD40 repeat protein [General function pr	98.73
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.7
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.69
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.64
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.61
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.56
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.54
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.48
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.48
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.47
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.46
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.43
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.43
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.42
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.41
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.37
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.35
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.35
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.34
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.31
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.3
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.3
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.29
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.27
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.22
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.2
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.18
PRK02888	635	nitrous-oxide reductase; Validated	98.16
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.04
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.03
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.01
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.97
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.92
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.89
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.89
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.87
PRK02888	635	nitrous-oxide reductase; Validated	97.86
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.86
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.85
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.85
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.85
KOG3621	726	consensus WD40 repeat-containing protein [General	97.83
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.82
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.79
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.76
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.75
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.7
KOG2395	644	consensus Protein involved in vacuole import and d	97.66
COG3391	381	Uncharacterized conserved protein [Function unknow	97.65
KOG3621	726	consensus WD40 repeat-containing protein [General	97.61
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.56
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.51
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.49
KOG2444	238	consensus WD40 repeat protein [General function pr	97.45
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.37
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.36
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.34
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.34
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.32
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.32
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.29
PHA02713	557	hypothetical protein; Provisional	97.23
COG3391	381	Uncharacterized conserved protein [Function unknow	97.22
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.21
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.17
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.12
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.11
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.08
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.06
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.94
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.91
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.82
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.74
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.73
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	96.67
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.66
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.66
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.58
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.48
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.34
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.27
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.12
PHA03098	534	kelch-like protein; Provisional	95.98
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	95.84
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.81
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.71
PRK13616	591	lipoprotein LpqB; Provisional	95.7
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.69
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	95.63
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.62
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.6
PRK13616	591	lipoprotein LpqB; Provisional	95.34
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.19
PHA02713	557	hypothetical protein; Provisional	95.16
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.16
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	95.09
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	95.03
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.84
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	94.84
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.63
PF14727	418	PHTB1_N: PTHB1 N-terminus	94.5
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.47
PHA02790	480	Kelch-like protein; Provisional	94.37
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.94
KOG2395	644	consensus Protein involved in vacuole import and d	93.76
KOG2444	238	consensus WD40 repeat protein [General function pr	93.58
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	93.57
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.48
COG4880	603	Secreted protein containing C-terminal beta-propel	93.42
COG5167	776	VID27 Protein involved in vacuole import and degra	93.04
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	93.01
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	92.85
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	92.78
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	92.47
COG5276	370	Uncharacterized conserved protein [Function unknow	92.37
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	92.35
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	92.29
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	92.22
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	92.0
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	91.87
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	91.53
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	91.42
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	90.88
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	90.75
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	90.62
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	90.56
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	90.45
PRK10115	686	protease 2; Provisional	89.99
KOG2247	615	consensus WD40 repeat-containing protein [General	89.91
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	89.78
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	89.71
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	89.45
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	89.2
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	88.96
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	88.56
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	88.15
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	87.96
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	87.66
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	87.04
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	87.0
PHA03098	534	kelch-like protein; Provisional	86.87
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	86.36
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	86.2
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	86.11
COG4590	733	ABC-type uncharacterized transport system, permeas	86.09
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	85.92
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	85.91
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	85.81
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	85.71
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	83.98
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	83.8
PHA02790	480	Kelch-like protein; Provisional	82.93
COG5167	776	VID27 Protein involved in vacuole import and degra	82.12
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	81.88
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	81.2
KOG2377	657	consensus Uncharacterized conserved protein [Funct	81.12
KOG3611	737	consensus Semaphorins [Signal transduction mechani	80.73
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	80.59
KOG3616	1636	consensus Selective LIM binding factor [Transcript	80.27
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	80.06

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-41  Score=260.72  Aligned_cols=280  Identities=17%  Similarity=0.263  Sum_probs=215.4

Q ss_pred             CCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCe
Q 021291            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (314)
Q Consensus         8 ~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (314)
                      .++-..+.||.++|.|++|+|+|..|++|+.|.++|+||+.+..+..+.++|.  ..|.|++|+|  |++.|++|+.||+
T Consensus       105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~--~WVlcvawsP--Dgk~iASG~~dg~  180 (480)
T KOG0271|consen  105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHK--NWVLCVAWSP--DGKKIASGSKDGS  180 (480)
T ss_pred             ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCc--cEEEEEEECC--CcchhhccccCCe
Confidence            36677889999999999999999999999999999999999999999999999  5599999999  9999999999999


Q ss_pred             EEEEeCCCCCCCCCCeeeeecceeeEEEeeeeecc----ccccccCCCCcceeeccCCceeeecCCCCCC--ceeccCCC
Q 021291           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEP----YANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGP  161 (314)
Q Consensus        88 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  161 (314)
                      |++||..+++++.++ +..+...+....+.+....    ........+...+|++..+.. ...+.+|..  .++.--|+
T Consensus       181 I~lwdpktg~~~g~~-l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~-~~~lsgHT~~VTCvrwGG~  258 (480)
T KOG0271|consen  181 IRLWDPKTGQQIGRA-LRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTC-VRTLSGHTASVTCVRWGGE  258 (480)
T ss_pred             EEEecCCCCCccccc-ccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceE-EEEeccCccceEEEEEcCC
Confidence            999999999876542 2333333333444333211    222334456677777766544 345667776  44545555


Q ss_pred             ceEEEeecCcCeEEEEecCCCceeeeecccc-------------------------------------------------
Q 021291          162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNS-------------------------------------------------  192 (314)
Q Consensus       162 ~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~-------------------------------------------------  192 (314)
                      .++. +|+.|++|++|+...|.+...++...                                                 
T Consensus       259 gliy-SgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~e  337 (480)
T KOG0271|consen  259 GLIY-SGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGE  337 (480)
T ss_pred             ceEE-ecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcc
Confidence            5554 89999999999988765444333100                                                 


Q ss_pred             ----------------------cCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeec
Q 021291          193 ----------------------CGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV  250 (314)
Q Consensus       193 ----------------------~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~  250 (314)
                                            .....+|    ...+..+. |+||   ++ ++++++.|+.|++||.++ ++.+.++.+
T Consensus       338 rlVSgsDd~tlflW~p~~~kkpi~rmtgH----q~lVn~V~-fSPd---~r-~IASaSFDkSVkLW~g~t-Gk~lasfRG  407 (480)
T KOG0271|consen  338 RLVSGSDDFTLFLWNPFKSKKPITRMTGH----QALVNHVS-FSPD---GR-YIASASFDKSVKLWDGRT-GKFLASFRG  407 (480)
T ss_pred             eeEEecCCceEEEecccccccchhhhhch----hhheeeEE-ECCC---cc-EEEEeecccceeeeeCCC-cchhhhhhh
Confidence                                  0001122    23567777 9998   66 999999999999999999 999999999


Q ss_pred             CCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEeee-------eeeecCCCceece
Q 021291          251 HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFGI-------GFVCDQEGNKFGT  304 (314)
Q Consensus       251 h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~-------~~~~~~~~~~~~~  304 (314)
                      |-++|..++|+.|.++|++||.|.++++|++++.+..+-..       ++..+|+|.+.+.
T Consensus       408 Hv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~s  468 (480)
T KOG0271|consen  408 HVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVAS  468 (480)
T ss_pred             ccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeec
Confidence            99999999999999999999999999999999988777544       3456678776654

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.1e-40  Score=256.38  Aligned_cols=246  Identities=18%  Similarity=0.274  Sum_probs=209.1

Q ss_pred             CCceEEecCCCCceeEEEEccC--CCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC
Q 021291            8 PDPVAVLRGHRASVTDVCFHQT--KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD   85 (314)
Q Consensus         8 ~~~~~~l~~h~~~v~~~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (314)
                      ...+++|+||++.|.++.|+|.  +..||||+.||++++|++.+...+..+.+|.  ..|..++|+|  +|++|+|++.|
T Consensus       207 ~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~--~RVs~VafHP--sG~~L~TasfD  282 (459)
T KOG0272|consen  207 CNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHL--ARVSRVAFHP--SGKFLGTASFD  282 (459)
T ss_pred             cceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcch--hhheeeeecC--CCceeeecccc
Confidence            3789999999999999999995  6789999999999999999989999999999  5599999999  99999999999


Q ss_pred             CeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCC
Q 021291           86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGP  161 (314)
Q Consensus        86 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  161 (314)
                      .+-++||++++....  ..+.+......+.|.++++.. ....-.....+|+++.++.+.. +.+|..    ++|+|+|-
T Consensus       283 ~tWRlWD~~tk~ElL--~QEGHs~~v~~iaf~~DGSL~-~tGGlD~~~RvWDlRtgr~im~-L~gH~k~I~~V~fsPNGy  358 (459)
T KOG0272|consen  283 STWRLWDLETKSELL--LQEGHSKGVFSIAFQPDGSLA-ATGGLDSLGRVWDLRTGRCIMF-LAGHIKEILSVAFSPNGY  358 (459)
T ss_pred             cchhhcccccchhhH--hhcccccccceeEecCCCcee-eccCccchhheeecccCcEEEE-ecccccceeeEeECCCce
Confidence            999999999987644  345555566666666554322 2233345678899999887654 555777    99999995


Q ss_pred             ceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCC
Q 021291          162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP  241 (314)
Q Consensus       162 ~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~  241 (314)
                       .++ +|+.|++++|||++....+.+++        +|.+    .+..+. |+|.  .|. +|++++.|++++||..++ 
T Consensus       359 -~lA-Tgs~Dnt~kVWDLR~r~~ly~ip--------AH~n----lVS~Vk-~~p~--~g~-fL~TasyD~t~kiWs~~~-  419 (459)
T KOG0272|consen  359 -HLA-TGSSDNTCKVWDLRMRSELYTIP--------AHSN----LVSQVK-YSPQ--EGY-FLVTASYDNTVKIWSTRT-  419 (459)
T ss_pred             -EEe-ecCCCCcEEEeeecccccceecc--------cccc----hhhheE-eccc--CCe-EEEEcccCcceeeecCCC-
Confidence             343 78889999999999999998888        8855    677776 9995  255 999999999999999998 


Q ss_pred             CCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEe
Q 021291          242 GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN  280 (314)
Q Consensus       242 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~  280 (314)
                      .++++.+.||.+.|.++++++++.+++|++.|.++++|.
T Consensus       420 ~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  420 WSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             cccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            999999999999999999999999999999999999995

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8e-39  Score=245.04  Aligned_cols=248  Identities=19%  Similarity=0.246  Sum_probs=200.9

Q ss_pred             CCCCceEEecCCCCceeEEEEcc-----CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEE
Q 021291            6 PPPDPVAVLRGHRASVTDVCFHQ-----TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI   80 (314)
Q Consensus         6 ~~~~~~~~l~~h~~~v~~~~~~~-----~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~   80 (314)
                      .-.+..+.|+||...|++++|.|     ..++||+++.||.|+|||+..+.++..+.+|..+  |+|+.|--  + .+++
T Consensus       188 tg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~--VTCvrwGG--~-gliy  262 (480)
T KOG0271|consen  188 TGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTAS--VTCVRWGG--E-GLIY  262 (480)
T ss_pred             CCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccc--eEEEEEcC--C-ceEE
Confidence            34456778999999999999987     4679999999999999999999999999999955  99999986  4 8999


Q ss_pred             EeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeee-----------ecc------------------------ccc
Q 021291           81 SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLV-----------KEP------------------------YAN  125 (314)
Q Consensus        81 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~------------------------~~~  125 (314)
                      ++|.|++|++|+...+.+.+  .+..+.+-.+...++..           +..                        ...
T Consensus       263 SgS~DrtIkvw~a~dG~~~r--~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlV  340 (480)
T KOG0271|consen  263 SGSQDRTIKVWRALDGKLCR--ELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLV  340 (480)
T ss_pred             ecCCCceEEEEEccchhHHH--hhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeE
Confidence            99999999999999988765  33333333333332211           111                        011


Q ss_pred             cccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCC
Q 021291          126 AKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSS  201 (314)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~  201 (314)
                      ...++.....|+..........+.+|+.    +.|+||+.++  ++++.|..|++||-++|+.+.+|.        ||  
T Consensus       341 SgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~I--ASaSFDkSVkLW~g~tGk~lasfR--------GH--  408 (480)
T KOG0271|consen  341 SGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYI--ASASFDKSVKLWDGRTGKFLASFR--------GH--  408 (480)
T ss_pred             EecCCceEEEecccccccchhhhhchhhheeeEEECCCccEE--EEeecccceeeeeCCCcchhhhhh--------hc--
Confidence            2223333444555555566677888988    8999999744  488899999999999999999999        88  


Q ss_pred             CCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEe
Q 021291          202 KGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN  280 (314)
Q Consensus       202 ~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~  280 (314)
                        -+.++.++ |+.|   .+ +|++|+.|.++++||+++ .+....+.+|.+.|.++.|+|||..+++|+.|..+++|.
T Consensus       409 --v~~VYqva-wsaD---sR-LlVS~SkDsTLKvw~V~t-kKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  409 --VAAVYQVA-WSAD---SR-LLVSGSKDSTLKVWDVRT-KKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             --cceeEEEE-eccC---cc-EEEEcCCCceEEEEEeee-eeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence              44788887 9987   44 999999999999999998 888899999999999999999999999999999999995

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.6e-38  Score=246.00  Aligned_cols=265  Identities=16%  Similarity=0.222  Sum_probs=210.6

Q ss_pred             cCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCC
Q 021291           15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE   94 (314)
Q Consensus        15 ~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~   94 (314)
                      -|-+.+|..+.|++|++.|+||+.+|.++||+..+...+.++.+|...  |.++.|+|..++..++||+.||++++|++.
T Consensus       172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~--v~~~~fhP~~~~~~lat~s~Dgtvklw~~~  249 (459)
T KOG0272|consen  172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSR--VGAAVFHPVDSDLNLATASADGTVKLWKLS  249 (459)
T ss_pred             ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccc--eeeEEEccCCCccceeeeccCCceeeeccC
Confidence            356789999999999999999999999999999999999999999954  999999994335689999999999999999


Q ss_pred             CCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCceEEEeecC
Q 021291           95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQ  170 (314)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~  170 (314)
                      +...+.  .++.+........|.+.+..... ......-.+|++.....+ ...++|+.    ++|.+||.  ++++|+.
T Consensus       250 ~e~~l~--~l~gH~~RVs~VafHPsG~~L~T-asfD~tWRlWD~~tk~El-L~QEGHs~~v~~iaf~~DGS--L~~tGGl  323 (459)
T KOG0272|consen  250 QETPLQ--DLEGHLARVSRVAFHPSGKFLGT-ASFDSTWRLWDLETKSEL-LLQEGHSKGVFSIAFQPDGS--LAATGGL  323 (459)
T ss_pred             CCcchh--hhhcchhhheeeeecCCCceeee-cccccchhhcccccchhh-HhhcccccccceeEecCCCc--eeeccCc
Confidence            876544  33334444444445544433222 222233344555444322 23467766    99999996  5568999


Q ss_pred             cCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeec
Q 021291          171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV  250 (314)
Q Consensus       171 d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~  250 (314)
                      |..-+|||+++++++..+.        +|..    .+.++. |+|+   |. .|++|+.|++++|||++. ...+.++.+
T Consensus       324 D~~~RvWDlRtgr~im~L~--------gH~k----~I~~V~-fsPN---Gy-~lATgs~Dnt~kVWDLR~-r~~ly~ipA  385 (459)
T KOG0272|consen  324 DSLGRVWDLRTGRCIMFLA--------GHIK----EILSVA-FSPN---GY-HLATGSSDNTCKVWDLRM-RSELYTIPA  385 (459)
T ss_pred             cchhheeecccCcEEEEec--------cccc----ceeeEe-ECCC---ce-EEeecCCCCcEEEeeecc-cccceeccc
Confidence            9999999999999999999        8844    788888 9998   65 899999999999999998 788999999


Q ss_pred             CCcceEEEEEeC-CCCeEEEecCCCcEEEEecCCCeeeEeeee-------eeecCCCceecee
Q 021291          251 HLEPVLCLSIDE-SCNGGISGGADQKIVLYNLDHSTYVLFGIG-------FVCDQEGNKFGTT  305 (314)
Q Consensus       251 h~~~v~~~~~~~-~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~-------~~~~~~~~~~~~~  305 (314)
                      |..-|+.|.|+| .|.+|+|+|.|++++||..++...+....|       +..++++..+++.
T Consensus       386 H~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~  448 (459)
T KOG0272|consen  386 HSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATS  448 (459)
T ss_pred             ccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEe
Confidence            999999999998 889999999999999999999888775433       3455666655553

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=4.5e-37  Score=226.18  Aligned_cols=214  Identities=22%  Similarity=0.363  Sum_probs=182.6

Q ss_pred             CCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC
Q 021291            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (314)
Q Consensus         7 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg   86 (314)
                      -+.+++.|+||+..|..++.++||++.++++.|+++++||+.+++..+.|.+|...  |.+++|++  |...+++|+.|.
T Consensus        52 ~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~d--Vlsva~s~--dn~qivSGSrDk  127 (315)
T KOG0279|consen   52 YGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKD--VLSVAFST--DNRQIVSGSRDK  127 (315)
T ss_pred             cCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCc--eEEEEecC--CCceeecCCCcc
Confidence            35789999999999999999999999999999999999999999999999999965  99999999  999999999999


Q ss_pred             eEEEEeCCCCCCCCCCeeeeecce---eeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCce
Q 021291           87 TVKCWDIENGGLSSNPSLTIKTNS---YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY  163 (314)
Q Consensus        87 ~v~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (314)
                      +|++||+....     .+++....   ...|                                       +.|+|.....
T Consensus       128 Tiklwnt~g~c-----k~t~~~~~~~~WVsc---------------------------------------vrfsP~~~~p  163 (315)
T KOG0279|consen  128 TIKLWNTLGVC-----KYTIHEDSHREWVSC---------------------------------------VRFSPNESNP  163 (315)
T ss_pred             eeeeeeecccE-----EEEEecCCCcCcEEE---------------------------------------EEEcCCCCCc
Confidence            99999997653     33333322   1122                                       5689987566


Q ss_pred             EEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCC
Q 021291          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI  243 (314)
Q Consensus       164 ~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~  243 (314)
                      ++++++.|++|++||+++.+....+.        ||    .+.+..+. ++||   |. ++++|+.||.+.+||++. ++
T Consensus       164 ~Ivs~s~DktvKvWnl~~~~l~~~~~--------gh----~~~v~t~~-vSpD---Gs-lcasGgkdg~~~LwdL~~-~k  225 (315)
T KOG0279|consen  164 IIVSASWDKTVKVWNLRNCQLRTTFI--------GH----SGYVNTVT-VSPD---GS-LCASGGKDGEAMLWDLNE-GK  225 (315)
T ss_pred             EEEEccCCceEEEEccCCcchhhccc--------cc----cccEEEEE-ECCC---CC-EEecCCCCceEEEEEccC-Cc
Confidence            66689999999999999999888888        77    55788887 9999   44 999999999999999998 77


Q ss_pred             ceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeE
Q 021291          244 PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVL  288 (314)
Q Consensus       244 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~  288 (314)
                      .++.+. |...|.+++|+|+...|+.+ .+..|+|||++++..+.
T Consensus       226 ~lysl~-a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~  268 (315)
T KOG0279|consen  226 NLYSLE-AFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVE  268 (315)
T ss_pred             eeEecc-CCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhh
Confidence            777765 68999999999998777665 45569999999887765

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2e-37  Score=257.22  Aligned_cols=213  Identities=21%  Similarity=0.343  Sum_probs=187.1

Q ss_pred             CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v   88 (314)
                      ...+++.||.++|..+.|+|+.++|++++.|++||+|.+.+..++..+++|..+  |+++.|+|  -|-+|+|+|.|++-
T Consensus       442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~P--VwdV~F~P--~GyYFatas~D~tA  517 (707)
T KOG0263|consen  442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAP--VWDVQFAP--RGYYFATASHDQTA  517 (707)
T ss_pred             ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcc--eeeEEecC--CceEEEecCCCcee
Confidence            456679999999999999999999999999999999999999999999999955  99999999  89999999999999


Q ss_pred             EEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEee
Q 021291           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG  168 (314)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  168 (314)
                      ++|........+  ++..+-....+                                        +.|+|+..+++  +|
T Consensus       518 rLWs~d~~~PlR--ifaghlsDV~c----------------------------------------v~FHPNs~Y~a--TG  553 (707)
T KOG0263|consen  518 RLWSTDHNKPLR--IFAGHLSDVDC----------------------------------------VSFHPNSNYVA--TG  553 (707)
T ss_pred             eeeecccCCchh--hhcccccccce----------------------------------------EEECCcccccc--cC
Confidence            999998754333  22222222111                                        56889887544  88


Q ss_pred             cCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEee
Q 021291          169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM  248 (314)
Q Consensus       169 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~  248 (314)
                      +.|.+|++||..+|..++.|.        ||    .+.+.+++ |+|+   |+ +|++|+.||.|++||+.+ +.++..+
T Consensus       554 SsD~tVRlWDv~~G~~VRiF~--------GH----~~~V~al~-~Sp~---Gr-~LaSg~ed~~I~iWDl~~-~~~v~~l  615 (707)
T KOG0263|consen  554 SSDRTVRLWDVSTGNSVRIFT--------GH----KGPVTALA-FSPC---GR-YLASGDEDGLIKIWDLAN-GSLVKQL  615 (707)
T ss_pred             CCCceEEEEEcCCCcEEEEec--------CC----CCceEEEE-EcCC---Cc-eEeecccCCcEEEEEcCC-Ccchhhh
Confidence            999999999999999999998        88    66899998 9998   77 999999999999999998 8999999


Q ss_pred             ecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeee
Q 021291          249 KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYV  287 (314)
Q Consensus       249 ~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~  287 (314)
                      .+|.+.|.+|.|+.+|..||+||.|..|++||+......
T Consensus       616 ~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~  654 (707)
T KOG0263|consen  616 KGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL  654 (707)
T ss_pred             hcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence            999999999999999999999999999999999876554

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=6.5e-35  Score=216.23  Aligned_cols=273  Identities=15%  Similarity=0.220  Sum_probs=214.7

Q ss_pred             CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v   88 (314)
                      +..++|+||.+.|.++.|++|.++|++++.||.+.|||.-+......+....  ..|..++|+|  .+++++.|+.|...
T Consensus        46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s--~WVMtCA~sP--Sg~~VAcGGLdN~C  121 (343)
T KOG0286|consen   46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPS--SWVMTCAYSP--SGNFVACGGLDNKC  121 (343)
T ss_pred             eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCc--eeEEEEEECC--CCCeEEecCcCcee
Confidence            3458999999999999999999999999999999999999988888888777  6699999999  99999999999999


Q ss_pred             EEEeCCCCCC----CCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCC
Q 021291           89 KCWDIENGGL----SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEG  160 (314)
Q Consensus        89 ~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  160 (314)
                      .||++.+.+.    .....+..+......|.|-.  ............-..|+++.++... .+.+|..    ++++|..
T Consensus       122 siy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d--D~~ilT~SGD~TCalWDie~g~~~~-~f~GH~gDV~slsl~p~~  198 (343)
T KOG0286|consen  122 SIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD--DNHILTGSGDMTCALWDIETGQQTQ-VFHGHTGDVMSLSLSPSD  198 (343)
T ss_pred             EEEecccccccccceeeeeecCccceeEEEEEcC--CCceEecCCCceEEEEEcccceEEE-EecCCcccEEEEecCCCC
Confidence            9999986521    11112333444444444433  3333334444555678888876544 4568877    7888943


Q ss_pred             CceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccC
Q 021291          161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (314)
Q Consensus       161 ~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~  240 (314)
                      .+.++ +|+.|+..++||+|.+.+.++|.        +|..    -+.++. |.|+   |. -+++|+.|++.++||+|.
T Consensus       199 ~ntFv-Sg~cD~~aklWD~R~~~c~qtF~--------ghes----DINsv~-ffP~---G~-afatGSDD~tcRlyDlRa  260 (343)
T KOG0286|consen  199 GNTFV-SGGCDKSAKLWDVRSGQCVQTFE--------GHES----DINSVR-FFPS---GD-AFATGSDDATCRLYDLRA  260 (343)
T ss_pred             CCeEE-ecccccceeeeeccCcceeEeec--------cccc----ccceEE-EccC---CC-eeeecCCCceeEEEeecC
Confidence            34454 67779999999999999999999        8844    667776 9998   55 899999999999999998


Q ss_pred             CCCceEeeec--CCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEee-------eeeeecCCCceece-eec
Q 021291          241 PGIPLTAMKV--HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFG-------IGFVCDQEGNKFGT-TWH  307 (314)
Q Consensus       241 ~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~-------~~~~~~~~~~~~~~-~w~  307 (314)
                       .+.+..+..  -..+|++++|+..|++|++|..|..+.+||.-.++.+-..       ..+..+|+|..+++ +|-
T Consensus       261 -D~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWD  336 (343)
T KOG0286|consen  261 -DQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWD  336 (343)
T ss_pred             -CcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchh
Confidence             676766662  2348999999999999999999999999999988877653       34557799988776 553

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.6e-35  Score=216.93  Aligned_cols=228  Identities=19%  Similarity=0.264  Sum_probs=187.7

Q ss_pred             CceEEecCCCCceeEEEEccC-CCEEEEecCCCeEEEEeCCC-----CeEEEEEeccCCcccEEEEEEcccCCCCeEEEe
Q 021291            9 DPVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQ-----HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ   82 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iwd~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~   82 (314)
                      ....+|++|++.|+.++..+. ...+++++.|.++.+|++..     |..++.+.+|++.  |..+..++  ++++.+++
T Consensus         6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~--v~dv~~s~--dg~~alS~   81 (315)
T KOG0279|consen    6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHF--VSDVVLSS--DGNFALSA   81 (315)
T ss_pred             eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceE--ecceEEcc--CCceEEec
Confidence            345689999999999999985 67899999999999999754     5678899999966  99999999  99999999


Q ss_pred             ecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCc
Q 021291           83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPK  162 (314)
Q Consensus        83 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (314)
                      +.|+++++||+.+++..+  .+..+......                                        ++|++++..
T Consensus        82 swD~~lrlWDl~~g~~t~--~f~GH~~dVls----------------------------------------va~s~dn~q  119 (315)
T KOG0279|consen   82 SWDGTLRLWDLATGESTR--RFVGHTKDVLS----------------------------------------VAFSTDNRQ  119 (315)
T ss_pred             cccceEEEEEecCCcEEE--EEEecCCceEE----------------------------------------EEecCCCce
Confidence            999999999999985433  23333222221                                        568888876


Q ss_pred             eEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCC
Q 021291          163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG  242 (314)
Q Consensus       163 ~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~  242 (314)
                      ++  +|+.|++|++|++.. .+..++..        +.  .+..+.++. |+|+.. .. +|++++.|++|++||+++ .
T Consensus       120 iv--SGSrDkTiklwnt~g-~ck~t~~~--------~~--~~~WVscvr-fsP~~~-~p-~Ivs~s~DktvKvWnl~~-~  182 (315)
T KOG0279|consen  120 IV--SGSRDKTIKLWNTLG-VCKYTIHE--------DS--HREWVSCVR-FSPNES-NP-IIVSASWDKTVKVWNLRN-C  182 (315)
T ss_pred             ee--cCCCcceeeeeeecc-cEEEEEec--------CC--CcCcEEEEE-EcCCCC-Cc-EEEEccCCceEEEEccCC-c
Confidence            55  899999999999874 45555542        21  166899998 999843 22 999999999999999998 8


Q ss_pred             CceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe------eeeeeecCCC
Q 021291          243 IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF------GIGFVCDQEG  299 (314)
Q Consensus       243 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~------~~~~~~~~~~  299 (314)
                      +....+.+|+..++.++++|||.++++|+.||.+.+||++.++.++.      +..++++|.-
T Consensus       183 ~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnr  245 (315)
T KOG0279|consen  183 QLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNR  245 (315)
T ss_pred             chhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCc
Confidence            88889999999999999999999999999999999999999999886      3445566655

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=5.6e-35  Score=211.95  Aligned_cols=262  Identities=13%  Similarity=0.107  Sum_probs=200.5

Q ss_pred             CCCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCe--EEEEEeccCCcccEEEEEEcccCCCCeEEEee
Q 021291            6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQG   83 (314)
Q Consensus         6 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (314)
                      ..+.+.++++...+.|+.+...|+++.||+++.- .||+||+.+++  ++.++.+|...  |+.+.|..  +|+.+++|+
T Consensus        28 ~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kN--VtaVgF~~--dgrWMyTgs  102 (311)
T KOG0315|consen   28 LTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKN--VTAVGFQC--DGRWMYTGS  102 (311)
T ss_pred             hcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCc--eEEEEEee--cCeEEEecC
Confidence            4567888888788899999999999999998876 59999998764  68899999855  99999999  999999999


Q ss_pred             cCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccC
Q 021291           84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAE  159 (314)
Q Consensus        84 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  159 (314)
                      +||+++|||++...+.+  .+... .+.....+.+ ...........+...+|++..........+....    +...|+
T Consensus       103 eDgt~kIWdlR~~~~qR--~~~~~-spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~d  178 (311)
T KOG0315|consen  103 EDGTVKIWDLRSLSCQR--NYQHN-SPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPD  178 (311)
T ss_pred             CCceEEEEeccCcccch--hccCC-CCcceEEecC-CcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCC
Confidence            99999999999976654  33333 2222222222 2234455666778888998776443333333222    888999


Q ss_pred             CCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEcc
Q 021291          160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR  239 (314)
Q Consensus       160 ~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~  239 (314)
                      |..+.+  +...|..++|++-.......+.+..  ....|    .+.+..+. |+|+   ++ +|++++.|.+++||+.+
T Consensus       179 gsml~a--~nnkG~cyvW~l~~~~~~s~l~P~~--k~~ah----~~~il~C~-lSPd---~k-~lat~ssdktv~iwn~~  245 (311)
T KOG0315|consen  179 GSMLAA--ANNKGNCYVWRLLNHQTASELEPVH--KFQAH----NGHILRCL-LSPD---VK-YLATCSSDKTVKIWNTD  245 (311)
T ss_pred             CcEEEE--ecCCccEEEEEccCCCccccceEhh--heecc----cceEEEEE-ECCC---Cc-EEEeecCCceEEEEecC
Confidence            987664  4446999999987654332222110  00144    56788887 9998   44 99999999999999999


Q ss_pred             CCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291          240 NPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF  289 (314)
Q Consensus       240 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~  289 (314)
                      +.-+.-..+++|...++..+|+.+|+||+||+.|+.+++|++..++.+.+
T Consensus       246 ~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~q  295 (311)
T KOG0315|consen  246 DFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQ  295 (311)
T ss_pred             CceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeee
Confidence            84356677889999999999999999999999999999999999997765

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=6.1e-35  Score=229.21  Aligned_cols=243  Identities=17%  Similarity=0.292  Sum_probs=192.1

Q ss_pred             CCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCC
Q 021291           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG   97 (314)
Q Consensus        18 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~   97 (314)
                      +..|++++|+.+|.+||+|+.||.++||+. +|..+.++..|.+  +|.++.|+.  .|++|++++.|+++.+||..+++
T Consensus       235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~Hkg--PI~slKWnk--~G~yilS~~vD~ttilwd~~~g~  309 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKG--PIFSLKWNK--KGTYILSGGVDGTTILWDAHTGT  309 (524)
T ss_pred             cCCcceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCC--ceEEEEEcC--CCCEEEeccCCccEEEEeccCce
Confidence            467999999999999999999999999995 5788889988885  499999999  99999999999999999999887


Q ss_pred             CCCCCeeeeecceeeEEEeeeeeccccccccCC--CCcceeeccCCceeeecCCCCCC----ceeccCCCceEEEeecCc
Q 021291           98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN--EPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQL  171 (314)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d  171 (314)
                      ..+  .++++..+    .+.+.+..........  +...++.+.... +...+.+|..    +.|.|.|. +| ++++.|
T Consensus       310 ~~q--~f~~~s~~----~lDVdW~~~~~F~ts~td~~i~V~kv~~~~-P~~t~~GH~g~V~alk~n~tg~-LL-aS~SdD  380 (524)
T KOG0273|consen  310 VKQ--QFEFHSAP----ALDVDWQSNDEFATSSTDGCIHVCKVGEDR-PVKTFIGHHGEVNALKWNPTGS-LL-ASCSDD  380 (524)
T ss_pred             EEE--eeeeccCC----ccceEEecCceEeecCCCceEEEEEecCCC-cceeeecccCceEEEEECCCCc-eE-EEecCC
Confidence            644  45555443    1223333333322222  334445554443 3444555766    88999886 33 478889


Q ss_pred             CeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCC-----CceEEEEeecCCcEEEEEccCCCCceE
Q 021291          172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQ-----GFVNVLAGYEDGSILVWDIRNPGIPLT  246 (314)
Q Consensus       172 ~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~-----g~~~l~~g~~dg~i~vwd~~~~~~~~~  246 (314)
                      ++++||..........+.        +|+.    .++.+. |+|+++-     ....+++++.|++|++||+.. +.++.
T Consensus       381 ~TlkiWs~~~~~~~~~l~--------~Hsk----ei~t~~-wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~-gv~i~  446 (524)
T KOG0273|consen  381 GTLKIWSMGQSNSVHDLQ--------AHSK----EIYTIK-WSPTGPVTSNPNMNLMLASASFDSTVKLWDVES-GVPIH  446 (524)
T ss_pred             CeeEeeecCCCcchhhhh--------hhcc----ceeeEe-ecCCCCccCCCcCCceEEEeecCCeEEEEEccC-CceeE
Confidence            999999998888888787        7744    566676 8886431     223799999999999999998 99999


Q ss_pred             eeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeE
Q 021291          247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVL  288 (314)
Q Consensus       247 ~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~  288 (314)
                      .+..|..+|.+|+|+|+|+++++|+.||.|.+|+..+++...
T Consensus       447 ~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~  488 (524)
T KOG0273|consen  447 TLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVK  488 (524)
T ss_pred             eeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeE
Confidence            999999999999999999999999999999999999998764

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.1e-33  Score=210.34  Aligned_cols=260  Identities=17%  Similarity=0.228  Sum_probs=202.8

Q ss_pred             CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCC-CCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCe
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTV-QHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (314)
                      .|+-.+.||++.|..+.|+|+|.+||||+.|..|.+|++. .-+....+++|.++  |..+.|.+  |++.+++++.|.+
T Consensus        38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgA--VM~l~~~~--d~s~i~S~gtDk~  113 (338)
T KOG0265|consen   38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGA--VMELHGMR--DGSHILSCGTDKT  113 (338)
T ss_pred             chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccce--eEeeeecc--CCCEEEEecCCce
Confidence            4566778999999999999999999999999999999964 34566778899965  99999999  9999999999999


Q ss_pred             EEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC--ceeccCCCceEE
Q 021291           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMA  165 (314)
Q Consensus        88 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  165 (314)
                      |+.||++++++..  .+..+..-...+.-.-.+..........+...+|+++....+.......+-  +.|..++...+ 
T Consensus       114 v~~wD~~tG~~~r--k~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~-  190 (338)
T KOG0265|consen  114 VRGWDAETGKRIR--KHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVI-  190 (338)
T ss_pred             EEEEecccceeee--hhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEeccccccee-
Confidence            9999999998765  223333322322222222334455666778888998876554433222222  77777777665 


Q ss_pred             EeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCC---C
Q 021291          166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP---G  242 (314)
Q Consensus       166 ~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~---~  242 (314)
                       +|.-|+.|++||++.++....+.        ||.+    .++.+. .+|+   |. ++.+-+.|.++++||++..   .
T Consensus       191 -sggIdn~ikvWd~r~~d~~~~ls--------Gh~D----tIt~ls-ls~~---gs-~llsnsMd~tvrvwd~rp~~p~~  252 (338)
T KOG0265|consen  191 -SGGIDNDIKVWDLRKNDGLYTLS--------GHAD----TITGLS-LSRY---GS-FLLSNSMDNTVRVWDVRPFAPSQ  252 (338)
T ss_pred             -eccccCceeeeccccCcceEEee--------cccC----ceeeEE-eccC---CC-ccccccccceEEEEEecccCCCC
Confidence             68889999999999999999998        8855    677776 8888   44 8999999999999999841   2


Q ss_pred             CceEeeecCCc----ceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEeeeee
Q 021291          243 IPLTAMKVHLE----PVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFGIGF  293 (314)
Q Consensus       243 ~~~~~~~~h~~----~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~  293 (314)
                      .++..+.+|..    ....++|+|++.++..|+.|..+++||......+++..|+
T Consensus       253 R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh  307 (338)
T KOG0265|consen  253 RCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGH  307 (338)
T ss_pred             ceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCc
Confidence            34777776643    3566789999999999999999999999999999986553

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=3.9e-35  Score=230.96  Aligned_cols=235  Identities=17%  Similarity=0.316  Sum_probs=195.9

Q ss_pred             CCCceEEecCCCCceeEEEEcc-CCCEEEEecCCCeEEEEeCCC-CeEEEEEeccCCcccEEEEEEcccCCCCeEEEeec
Q 021291            7 PPDPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQ-HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (314)
Q Consensus         7 ~~~~~~~l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (314)
                      |.+.++++.||+..|+++.|.| .+.+|++++.|+.|+||++.. +++++++.+|.  .+|..++|++  +|..|++++.
T Consensus       203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~--k~Vrd~~~s~--~g~~fLS~sf  278 (503)
T KOG0282|consen  203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHR--KPVRDASFNN--CGTSFLSASF  278 (503)
T ss_pred             cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcch--hhhhhhhccc--cCCeeeeeec
Confidence            6788999999999999999999 899999999999999999976 89999999999  4599999999  9999999999


Q ss_pred             CCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceE
Q 021291           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM  164 (314)
Q Consensus        85 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (314)
                      |+.|++||+++|++..    .++......|                                       +.|.|++.+++
T Consensus       279 D~~lKlwDtETG~~~~----~f~~~~~~~c---------------------------------------vkf~pd~~n~f  315 (503)
T KOG0282|consen  279 DRFLKLWDTETGQVLS----RFHLDKVPTC---------------------------------------VKFHPDNQNIF  315 (503)
T ss_pred             ceeeeeeccccceEEE----EEecCCCcee---------------------------------------eecCCCCCcEE
Confidence            9999999999998744    5666555555                                       66889997777


Q ss_pred             EEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCC-
Q 021291          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI-  243 (314)
Q Consensus       165 ~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~-  243 (314)
                      ++ |..|+.|+.||+++++.++.+.        .|    -+.+..+. |-|+   |+ .+++.+.|+.++||+.+.+-. 
T Consensus       316 l~-G~sd~ki~~wDiRs~kvvqeYd--------~h----Lg~i~~i~-F~~~---g~-rFissSDdks~riWe~~~~v~i  377 (503)
T KOG0282|consen  316 LV-GGSDKKIRQWDIRSGKVVQEYD--------RH----LGAILDIT-FVDE---GR-RFISSSDDKSVRIWENRIPVPI  377 (503)
T ss_pred             EE-ecCCCcEEEEeccchHHHHHHH--------hh----hhheeeeE-EccC---Cc-eEeeeccCccEEEEEcCCCccc
Confidence            74 6669999999999999888887        44    55788887 9998   55 899999999999999875210 


Q ss_pred             --------------------------------------------ceEeeecCCc--ceEEEEEeCCCCeEEEecCCCcEE
Q 021291          244 --------------------------------------------PLTAMKVHLE--PVLCLSIDESCNGGISGGADQKIV  277 (314)
Q Consensus       244 --------------------------------------------~~~~~~~h~~--~v~~~~~~~~~~~l~s~s~dg~i~  277 (314)
                                                                  ....+.+|..  .-..+.|+|||.+|++|+.||.+.
T Consensus       378 k~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~  457 (503)
T KOG0282|consen  378 KNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVN  457 (503)
T ss_pred             hhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEE
Confidence                                                        0112345543  456688999999999999999999


Q ss_pred             EEecCCCeeeEeeeeeeecCCCceeceeecccc
Q 021291          278 LYNLDHSTYVLFGIGFVCDQEGNKFGTTWHIRH  310 (314)
Q Consensus       278 iw~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  310 (314)
                      +||.++-+.+....+    .++...+..||+..
T Consensus       458 ~wdwkt~kl~~~lka----h~~~ci~v~wHP~e  486 (503)
T KOG0282|consen  458 FWDWKTTKLVSKLKA----HDQPCIGVDWHPVE  486 (503)
T ss_pred             Eeechhhhhhhcccc----CCcceEEEEecCCC
Confidence            999999988776655    36777888888743

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.1e-33  Score=215.36  Aligned_cols=217  Identities=22%  Similarity=0.341  Sum_probs=185.1

Q ss_pred             CCCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC
Q 021291            6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD   85 (314)
Q Consensus         6 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (314)
                      .|-+..+++.||.+.|.|+++.|-+.+|+||+.|++++|||+.+|+...++.+|...  |..+++++  -..++++++.|
T Consensus       139 apwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~--vr~vavS~--rHpYlFs~ged  214 (460)
T KOG0285|consen  139 APWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIET--VRGVAVSK--RHPYLFSAGED  214 (460)
T ss_pred             CcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhhe--eeeeeecc--cCceEEEecCC
Confidence            466888999999999999999999999999999999999999999999999999955  99999999  78999999999


Q ss_pred             CeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEE
Q 021291           86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA  165 (314)
Q Consensus        86 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (314)
                      +.|+.||++.++.++    ..+.+-.....                                      ++..|.-+.+  
T Consensus       215 k~VKCwDLe~nkvIR----~YhGHlS~V~~--------------------------------------L~lhPTldvl--  250 (460)
T KOG0285|consen  215 KQVKCWDLEYNKVIR----HYHGHLSGVYC--------------------------------------LDLHPTLDVL--  250 (460)
T ss_pred             CeeEEEechhhhhHH----HhccccceeEE--------------------------------------EeccccceeE--
Confidence            999999999988765    22222111111                                      3455655533  


Q ss_pred             EeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCce
Q 021291          166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL  245 (314)
Q Consensus       166 ~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~  245 (314)
                      ++|+.|.++++||+++...+..+.        ||    ...+.++. +.|.++    .+++|+.|++|++||++. ++-+
T Consensus       251 ~t~grDst~RvWDiRtr~~V~~l~--------GH----~~~V~~V~-~~~~dp----qvit~S~D~tvrlWDl~a-gkt~  312 (460)
T KOG0285|consen  251 VTGGRDSTIRVWDIRTRASVHVLS--------GH----TNPVASVM-CQPTDP----QVITGSHDSTVRLWDLRA-GKTM  312 (460)
T ss_pred             EecCCcceEEEeeecccceEEEec--------CC----CCcceeEE-eecCCC----ceEEecCCceEEEeeecc-Ccee
Confidence            378889999999999999999998        88    44677776 777644    699999999999999998 8889


Q ss_pred             EeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291          246 TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF  289 (314)
Q Consensus       246 ~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~  289 (314)
                      ..+..|...|.+++.+|....++++|.|. |+-|++..+..+..
T Consensus       313 ~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~n  355 (460)
T KOG0285|consen  313 ITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQN  355 (460)
T ss_pred             EeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhc
Confidence            99999999999999999999999999885 99999999887664

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.7e-33  Score=200.52  Aligned_cols=270  Identities=15%  Similarity=0.203  Sum_probs=207.8

Q ss_pred             CCCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC
Q 021291            6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD   85 (314)
Q Consensus         6 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (314)
                      .|.+.++.+..|+++|.++.|+-||+|.++++.|.+|++|+...+.+++++.+|.++  |..++.+.  |...|++|+.|
T Consensus         5 ~ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~E--VlD~~~s~--Dnskf~s~GgD   80 (307)
T KOG0316|consen    5 LPTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHE--VLDAALSS--DNSKFASCGGD   80 (307)
T ss_pred             CcchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCce--eeeccccc--cccccccCCCC
Confidence            455788999999999999999999999999999999999999999999999999966  99999998  88999999999


Q ss_pred             CeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCc-eeeecCCCCCC--ceeccCCCc
Q 021291           86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE-TVDTDSLCDSK--DDVPAEGPK  162 (314)
Q Consensus        86 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~  162 (314)
                      ..+.+||+++++..+  .+..+........|+-.. ..............|+-+... .+...+....+  .++.-.+..
T Consensus        81 k~v~vwDV~TGkv~R--r~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~he  157 (307)
T KOG0316|consen   81 KAVQVWDVNTGKVDR--RFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHE  157 (307)
T ss_pred             ceEEEEEcccCeeee--ecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccE
Confidence            999999999998866  333333333333332211 122233445667778776654 33333333333  444444443


Q ss_pred             eEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCC
Q 021291          163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG  242 (314)
Q Consensus       163 ~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~  242 (314)
                      ++  +|+.||+++.||++.++....+-        +|      ++.++. |+++   ++ ..++++.|+++++.|-.+ +
T Consensus       158 Iv--aGS~DGtvRtydiR~G~l~sDy~--------g~------pit~vs-~s~d---~n-c~La~~l~stlrLlDk~t-G  215 (307)
T KOG0316|consen  158 IV--AGSVDGTVRTYDIRKGTLSSDYF--------GH------PITSVS-FSKD---GN-CSLASSLDSTLRLLDKET-G  215 (307)
T ss_pred             EE--eeccCCcEEEEEeecceeehhhc--------CC------cceeEE-ecCC---CC-EEEEeeccceeeecccch-h
Confidence            33  79999999999999998776655        45      788887 9998   44 899999999999999998 9


Q ss_pred             CceEeeecCCcceE--EEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe--------eeeeeecCCCceece
Q 021291          243 IPLTAMKVHLEPVL--CLSIDESCNGGISGGADQKIVLYNLDHSTYVLF--------GIGFVCDQEGNKFGT  304 (314)
Q Consensus       243 ~~~~~~~~h~~~v~--~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~--------~~~~~~~~~~~~~~~  304 (314)
                      +.+..+++|...-.  ..++......+++||.||.|++||+..+..+..        ...++++|....|.+
T Consensus       216 klL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~  287 (307)
T KOG0316|consen  216 KLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFIT  287 (307)
T ss_pred             HHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeE
Confidence            99999999987544  445566677899999999999999999887764        344567776655544

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.4e-34  Score=216.42  Aligned_cols=257  Identities=17%  Similarity=0.242  Sum_probs=200.6

Q ss_pred             CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v   88 (314)
                      .+.+.+.||..+|+.+-|+|+-..+++++.|++|++||..++++...+++|...  |.+++|+.  .|+++++++.|-.+
T Consensus        99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~s--v~di~~~a--~Gk~l~tcSsDl~~  174 (406)
T KOG0295|consen   99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDS--VFDISFDA--SGKYLATCSSDLSA  174 (406)
T ss_pred             CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccc--eeEEEEec--CccEEEecCCccch
Confidence            566778899999999999999999999999999999999999999999999955  99999999  99999999999999


Q ss_pred             EEEeCCCC-CCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCce
Q 021291           89 KCWDIENG-GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKY  163 (314)
Q Consensus        89 ~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  163 (314)
                      ++||..+. ++++  ....+.+......+-+.+.... ..........|++..+..+ ..+.+|..    +..+.||  .
T Consensus       175 ~LWd~~~~~~c~k--s~~gh~h~vS~V~f~P~gd~il-S~srD~tik~We~~tg~cv-~t~~~h~ewvr~v~v~~DG--t  248 (406)
T KOG0295|consen  175 KLWDFDTFFRCIK--SLIGHEHGVSSVFFLPLGDHIL-SCSRDNTIKAWECDTGYCV-KTFPGHSEWVRMVRVNQDG--T  248 (406)
T ss_pred             hheeHHHHHHHHH--HhcCcccceeeEEEEecCCeee-ecccccceeEEecccceeE-EeccCchHhEEEEEecCCe--e
Confidence            99999873 3332  2223333333444444432221 2222334466777666543 35677777    4444554  5


Q ss_pred             EEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCC------------CCCceEEEEeecCC
Q 021291          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSK------------SQGFVNVLAGYEDG  231 (314)
Q Consensus       164 ~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~------------~~g~~~l~~g~~dg  231 (314)
                      ++++++.|.+|++|-+.++++...+.        .|.-    .+-+++ |.|..            ..++ ++.+++.|+
T Consensus       249 i~As~s~dqtl~vW~~~t~~~k~~lR--------~hEh----~vEci~-wap~~~~~~i~~at~~~~~~~-~l~s~SrDk  314 (406)
T KOG0295|consen  249 IIASCSNDQTLRVWVVATKQCKAELR--------EHEH----PVECIA-WAPESSYPSISEATGSTNGGQ-VLGSGSRDK  314 (406)
T ss_pred             EEEecCCCceEEEEEeccchhhhhhh--------cccc----ceEEEE-ecccccCcchhhccCCCCCcc-EEEeecccc
Confidence            66689999999999999998777776        5533    444444 55531            2234 899999999


Q ss_pred             cEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEee
Q 021291          232 SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFG  290 (314)
Q Consensus       232 ~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~  290 (314)
                      +|++||+.+ +.++.++.+|...|..++|+|.|+||+++.+|+++++||+.+++++...
T Consensus       315 tIk~wdv~t-g~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~  372 (406)
T KOG0295|consen  315 TIKIWDVST-GMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTL  372 (406)
T ss_pred             eEEEEeccC-CeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeecc
Confidence            999999999 8999999999999999999999999999999999999999999988753

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.9e-32  Score=203.25  Aligned_cols=242  Identities=16%  Similarity=0.214  Sum_probs=196.9

Q ss_pred             eEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCC------eEEEEEeccCCcccEEEEEEcccCCCCeEEEeec
Q 021291           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH------RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (314)
Q Consensus        11 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (314)
                      ++.+.-....|..++|+|.|+++|.|+.|+...||++.+.      +..+.+.+|.  ..+.|+.|.+  | ..|+++|.
T Consensus        90 ~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHt--gylScC~f~d--D-~~ilT~SG  164 (343)
T KOG0286|consen   90 VHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHT--GYLSCCRFLD--D-NHILTGSG  164 (343)
T ss_pred             eeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCcc--ceeEEEEEcC--C-CceEecCC
Confidence            4445555788999999999999999999999999999854      3456788898  4599999988  6 88999999


Q ss_pred             CCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeec--cccccccCCCCcceeeccCCceeeecCCCCCC----ceecc
Q 021291           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKE--PYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPA  158 (314)
Q Consensus        85 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  158 (314)
                      |.+..+||+++++...    .++.+......+++...  .............+|+++... ....+.+|..    +.|.|
T Consensus       165 D~TCalWDie~g~~~~----~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~-c~qtF~ghesDINsv~ffP  239 (343)
T KOG0286|consen  165 DMTCALWDIETGQQTQ----VFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ-CVQTFEGHESDINSVRFFP  239 (343)
T ss_pred             CceEEEEEcccceEEE----EecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc-eeEeecccccccceEEEcc
Confidence            9999999999997644    45555444444444432  223334445667889998884 4456677766    99999


Q ss_pred             CCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEc
Q 021291          159 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI  238 (314)
Q Consensus       159 ~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~  238 (314)
                      +|..+.  +|+.|++.++||+|..+.+..+..          ......+++++ |+-.   |+ +|++|..|..+.+||.
T Consensus       240 ~G~afa--tGSDD~tcRlyDlRaD~~~a~ys~----------~~~~~gitSv~-FS~S---GR-lLfagy~d~~c~vWDt  302 (343)
T KOG0286|consen  240 SGDAFA--TGSDDATCRLYDLRADQELAVYSH----------DSIICGITSVA-FSKS---GR-LLFAGYDDFTCNVWDT  302 (343)
T ss_pred             CCCeee--ecCCCceeEEEeecCCcEEeeecc----------CcccCCceeEE-Eccc---cc-EEEeeecCCceeEeec
Confidence            997543  899999999999999998888873          22456788898 9987   77 9999999999999999


Q ss_pred             cCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEe
Q 021291          239 RNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN  280 (314)
Q Consensus       239 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~  280 (314)
                      -. ++.+..+.+|...|+++..+|||..|+|||.|..++||.
T Consensus       303 lk-~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  303 LK-GERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             cc-cceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            87 888999999999999999999999999999999999994

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2.2e-32  Score=217.71  Aligned_cols=268  Identities=15%  Similarity=0.231  Sum_probs=195.6

Q ss_pred             CCCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEe---ccCCcccEEEEEEcccCCCCeEEEe
Q 021291            6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW---VHSAAHGIVSVATGPSIGLNKVISQ   82 (314)
Q Consensus         6 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~s~   82 (314)
                      ||-+.-.+++.|..-|+|+.|+|||.++||++.||.|.+||=.+++.+..+.   +|.+  .|.+++|+|  |+..|+++
T Consensus       178 PPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkG--sIfalsWsP--Ds~~~~T~  253 (603)
T KOG0318|consen  178 PPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKG--SIFALSWSP--DSTQFLTV  253 (603)
T ss_pred             CCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccc--cEEEEEECC--CCceEEEe
Confidence            5668888999999999999999999999999999999999999999999998   7774  499999999  99999999


Q ss_pred             ecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeee-ccccccccCCCCcceeeccCCceeeecCCCCCC----ceec
Q 021291           83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK-EPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVP  157 (314)
Q Consensus        83 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  157 (314)
                      +.|.+++|||+.+.++++  .+.+... .....+.+.+ .........++....++..... +.....+|..    ++.+
T Consensus       254 SaDkt~KIWdVs~~slv~--t~~~~~~-v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~-~~~~i~GHnK~ITaLtv~  329 (603)
T KOG0318|consen  254 SADKTIKIWDVSTNSLVS--TWPMGST-VEDQQVGCLWQKDHLITVSLSGTINYLNPSDPS-VLKVISGHNKSITALTVS  329 (603)
T ss_pred             cCCceEEEEEeeccceEE--EeecCCc-hhceEEEEEEeCCeEEEEEcCcEEEEecccCCC-hhheecccccceeEEEEc
Confidence            999999999999998766  2222222 1111122222 2233334444555555555555 6667778877    8889


Q ss_pred             cCCCceEEEeecCcCeEEEEecCCCcee-----------eeecccc----------------------cCC----CCCc-
Q 021291          158 AEGPKYMAVAGEQLSEVEIWDLNTAERC-----------TRLHQNS----------------------CGG----SPNF-  199 (314)
Q Consensus       158 ~~~~~~~~~~g~~d~~i~vwd~~~~~~~-----------~~~~~~~----------------------~~~----~~~h-  199 (314)
                      +++++++  +|+.||.|.-||..++..-           ..+....                      ...    ..++ 
T Consensus       330 ~d~~~i~--SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~Q  407 (603)
T KOG0318|consen  330 PDGKTIY--SGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQ  407 (603)
T ss_pred             CCCCEEE--eeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCC
Confidence            9997666  8999999999998665321           0000000                      000    0000 


Q ss_pred             ---------------------------------------------------------------------------CCCCC
Q 021291          200 ---------------------------------------------------------------------------SSKGR  204 (314)
Q Consensus       200 ---------------------------------------------------------------------------~~~~~  204 (314)
                                                                                                 ..+++
T Consensus       408 P~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~  487 (603)
T KOG0318|consen  408 PKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHR  487 (603)
T ss_pred             ceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeeccc
Confidence                                                                                       01234


Q ss_pred             ceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCC
Q 021291          205 GMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS  284 (314)
Q Consensus       205 ~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~  284 (314)
                      +.++.++ |+||   +. +|++|...+.+.+||..+.......+.-|...|.+|+|+|+..++||||.|-.|.||+++.+
T Consensus       488 a~iT~va-ySpd---~~-yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP  562 (603)
T KOG0318|consen  488 AAITDVA-YSPD---GA-YLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKP  562 (603)
T ss_pred             CCceEEE-ECCC---Cc-EEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccCh
Confidence            5566776 8877   44 78888888888888887633333445569999999999999999999999999999999988


Q ss_pred             eeeE
Q 021291          285 TYVL  288 (314)
Q Consensus       285 ~~~~  288 (314)
                      ....
T Consensus       563 ~~~i  566 (603)
T KOG0318|consen  563 AKHI  566 (603)
T ss_pred             hhhe
Confidence            7653

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=3.1e-33  Score=232.43  Aligned_cols=235  Identities=17%  Similarity=0.289  Sum_probs=191.7

Q ss_pred             CCCCCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCe-------------------------------E
Q 021291            4 RPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-------------------------------T   52 (314)
Q Consensus         4 ~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-------------------------------~   52 (314)
                      ..+|.-+..++..-...++|..|++|+.+||.|-.|..|++|.+...+                               .
T Consensus       364 ~~lpSic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~  443 (707)
T KOG0263|consen  364 NSLPSICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGT  443 (707)
T ss_pred             CCCCcEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCce
Confidence            345556777787777889999999999999999999999999987311                               1


Q ss_pred             EEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCC
Q 021291           53 VSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEP  132 (314)
Q Consensus        53 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (314)
                      ..++.+|.++  |....|+|  +.++|+++|.|+++|+|.+.+..+..    ..+.+....+.                 
T Consensus       444 ~~~L~GH~GP--Vyg~sFsP--d~rfLlScSED~svRLWsl~t~s~~V----~y~GH~~PVwd-----------------  498 (707)
T KOG0263|consen  444 SRTLYGHSGP--VYGCSFSP--DRRFLLSCSEDSSVRLWSLDTWSCLV----IYKGHLAPVWD-----------------  498 (707)
T ss_pred             eEEeecCCCc--eeeeeecc--cccceeeccCCcceeeeecccceeEE----EecCCCcceee-----------------
Confidence            3446788855  99999999  99999999999999999999987643    33333222221                 


Q ss_pred             cceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEE
Q 021291          133 KDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQA  212 (314)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  212 (314)
                                           +.|+|-|-+ ++ +++.|++-++|......+++.+.        +|-.    -+-|+. 
T Consensus       499 ---------------------V~F~P~GyY-Fa-tas~D~tArLWs~d~~~PlRifa--------ghls----DV~cv~-  542 (707)
T KOG0263|consen  499 ---------------------VQFAPRGYY-FA-TASHDQTARLWSTDHNKPLRIFA--------GHLS----DVDCVS-  542 (707)
T ss_pred             ---------------------EEecCCceE-EE-ecCCCceeeeeecccCCchhhhc--------cccc----ccceEE-
Confidence                                 457788743 43 67889999999999988888888        7844    566676 


Q ss_pred             ecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEee--
Q 021291          213 YLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFG--  290 (314)
Q Consensus       213 ~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~--  290 (314)
                      |+|+..    |+++|+.|.+|++||+.+ +..++.+.||.++|++|+|+|+|++|++|+.||.|.+||+.+++.+...  
T Consensus       543 FHPNs~----Y~aTGSsD~tVRlWDv~~-G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~  617 (707)
T KOG0263|consen  543 FHPNSN----YVATGSSDRTVRLWDVST-GNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKG  617 (707)
T ss_pred             ECCccc----ccccCCCCceEEEEEcCC-CcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhc
Confidence            999854    999999999999999998 8999999999999999999999999999999999999999998877653  


Q ss_pred             -----eeeeecCCCceece
Q 021291          291 -----IGFVCDQEGNKFGT  304 (314)
Q Consensus       291 -----~~~~~~~~~~~~~~  304 (314)
                           ..++++.+|..++.
T Consensus       618 Ht~ti~SlsFS~dg~vLas  636 (707)
T KOG0263|consen  618 HTGTIYSLSFSRDGNVLAS  636 (707)
T ss_pred             ccCceeEEEEecCCCEEEe
Confidence                 34567788877664

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.9e-32  Score=231.52  Aligned_cols=220  Identities=24%  Similarity=0.377  Sum_probs=181.7

Q ss_pred             ceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeC-CCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDT-VQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (314)
Q Consensus        10 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v   88 (314)
                      ..+.+.+|...|.+++|+|+++++++++.|++|+|||+ ..+..++++++|...  |++++|+|  +++++++|+.|++|
T Consensus       195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~--v~~~~f~p--~g~~i~Sgs~D~tv  270 (456)
T KOG0266|consen  195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTY--VTSVAFSP--DGNLLVSGSDDGTV  270 (456)
T ss_pred             hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCc--eEEEEecC--CCCEEEEecCCCcE
Confidence            67778999999999999999999999999999999999 556899999999955  99999999  88999999999999


Q ss_pred             EEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEee
Q 021291           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG  168 (314)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  168 (314)
                      +|||++++++..  .+..+......                                        ++|++++..++  ++
T Consensus       271 riWd~~~~~~~~--~l~~hs~~is~----------------------------------------~~f~~d~~~l~--s~  306 (456)
T KOG0266|consen  271 RIWDVRTGECVR--KLKGHSDGISG----------------------------------------LAFSPDGNLLV--SA  306 (456)
T ss_pred             EEEeccCCeEEE--eeeccCCceEE----------------------------------------EEECCCCCEEE--Ec
Confidence            999999987655  33333333322                                        45888887554  45


Q ss_pred             cCcCeEEEEecCCCc--eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceE
Q 021291          169 EQLSEVEIWDLNTAE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (314)
Q Consensus       169 ~~d~~i~vwd~~~~~--~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~  246 (314)
                      +.|+.|++||+.++.  +...+.        ++... . .+..+. |+|+   +. ++++++.|+.+++||++. ...+.
T Consensus       307 s~d~~i~vwd~~~~~~~~~~~~~--------~~~~~-~-~~~~~~-fsp~---~~-~ll~~~~d~~~~~w~l~~-~~~~~  370 (456)
T KOG0266|consen  307 SYDGTIRVWDLETGSKLCLKLLS--------GAENS-A-PVTSVQ-FSPN---GK-YLLSASLDRTLKLWDLRS-GKSVG  370 (456)
T ss_pred             CCCccEEEEECCCCceeeeeccc--------CCCCC-C-ceeEEE-ECCC---Cc-EEEEecCCCeEEEEEccC-Cccee
Confidence            779999999999998  455555        44332 2 677887 9998   55 999999999999999998 88888


Q ss_pred             eeecCCcce---EEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEeeeee
Q 021291          247 AMKVHLEPV---LCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFGIGF  293 (314)
Q Consensus       247 ~~~~h~~~v---~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~  293 (314)
                      .+.+|...+   .+....+.+.++++|+.|+.|++|++.++..+....++
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h  420 (456)
T KOG0266|consen  371 TYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGH  420 (456)
T ss_pred             eecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCC
Confidence            899888754   33344789999999999999999999998877766555

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=8.3e-32  Score=205.37  Aligned_cols=283  Identities=14%  Similarity=0.184  Sum_probs=209.1

Q ss_pred             CCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCe
Q 021291            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (314)
Q Consensus         8 ~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (314)
                      ...+.+|..|+++|.+++.+|+.++++||+.|..-.||++.+++....+.+|+..  |+++.|+.  ++.+|+||+.+|.
T Consensus        54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDS--Vt~~~Fsh--dgtlLATGdmsG~  129 (399)
T KOG0296|consen   54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDS--VTCCSFSH--DGTLLATGDMSGK  129 (399)
T ss_pred             ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCc--eEEEEEcc--CceEEEecCCCcc
Confidence            4567899999999999999999999999999999999999999999999999955  99999999  9999999999999


Q ss_pred             EEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCce
Q 021291           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKY  163 (314)
Q Consensus        88 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  163 (314)
                      |+||+..++....  .+...........+.+ ...........+....|.+... .....+.+|..    -.|.|+|+++
T Consensus       130 v~v~~~stg~~~~--~~~~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~-~~~kv~~Gh~~~ct~G~f~pdGKr~  205 (399)
T KOG0296|consen  130 VLVFKVSTGGEQW--KLDQEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQ-ALCKVMSGHNSPCTCGEFIPDGKRI  205 (399)
T ss_pred             EEEEEcccCceEE--EeecccCceEEEEecc-cccEEEeecCCCcEEEEECCCc-ceeeEecCCCCCcccccccCCCceE
Confidence            9999999987644  2222333444444444 2233334455566666676665 45556677776    6799999977


Q ss_pred             EEEeecCcCeEEEEecCCCceeeeecccccCCC-------CCcC-------------CCCCc------------------
Q 021291          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGS-------PNFS-------------SKGRG------------------  205 (314)
Q Consensus       164 ~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~-------~~h~-------------~~~~~------------------  205 (314)
                      +  ++..||+|++||+.++.++..+........       .++.             ....+                  
T Consensus       206 ~--tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e  283 (399)
T KOG0296|consen  206 L--TGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQE  283 (399)
T ss_pred             E--EEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccch
Confidence            6  688899999999999998877762111000       0000             00001                  


Q ss_pred             -eeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCC
Q 021291          206 -MCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS  284 (314)
Q Consensus       206 -~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~  284 (314)
                       ..-++. +.|....=. +.|+|+.||+|.|||+.. . .++..-.|..+|+.+.|.+ ..+|++++.||.|+.||.++|
T Consensus       284 ~~~esve-~~~~ss~lp-L~A~G~vdG~i~iyD~a~-~-~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG  358 (399)
T KOG0296|consen  284 ELDESVE-SIPSSSKLP-LAACGSVDGTIAIYDLAA-S-TLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTG  358 (399)
T ss_pred             hhhhhhh-hcccccccc-hhhcccccceEEEEeccc-c-hhheeccCCCceEEEEEcC-cchheeeccCceEEeeecccc
Confidence             111222 223222112 689999999999999985 4 4445556999999999988 668999999999999999999


Q ss_pred             eeeEee-------eeeeecCCCceecee
Q 021291          285 TYVLFG-------IGFVCDQEGNKFGTT  305 (314)
Q Consensus       285 ~~~~~~-------~~~~~~~~~~~~~~~  305 (314)
                      +.++..       ..|+..|+++.+.++
T Consensus       359 ~l~~~y~GH~~~Il~f~ls~~~~~vvT~  386 (399)
T KOG0296|consen  359 QLKFTYTGHQMGILDFALSPQKRLVVTV  386 (399)
T ss_pred             ceEEEEecCchheeEEEEcCCCcEEEEe
Confidence            998874       456777888776653

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=8.9e-35  Score=220.68  Aligned_cols=233  Identities=19%  Similarity=0.315  Sum_probs=143.4

Q ss_pred             CCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCC
Q 021291           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG   97 (314)
Q Consensus        18 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~   97 (314)
                      .+.|.|+.+.  ...+++|..|++|+|||..+..++..+.+|.+.  |.|+.|..    ..+++|+.|.+|++||+++++
T Consensus       197 skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGS--VLCLqyd~----rviisGSSDsTvrvWDv~tge  268 (499)
T KOG0281|consen  197 SKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGS--VLCLQYDE----RVIVSGSSDSTVRVWDVNTGE  268 (499)
T ss_pred             CCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCc--EEeeeccc----eEEEecCCCceEEEEeccCCc
Confidence            3445555552  234555555555555555555555555555555  55555555    355555555555555555555


Q ss_pred             CCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCc--eeeecCCCCCC--ceeccCCCceEEEeecCcCe
Q 021291           98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE--TVDTDSLCDSK--DDVPAEGPKYMAVAGEQLSE  173 (314)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~g~~d~~  173 (314)
                      .++  .+-.+........++   ..............+|++....  .....+.+|..  -....+.++++  +++.|.+
T Consensus       269 ~l~--tlihHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIV--sASgDRT  341 (499)
T KOG0281|consen  269 PLN--TLIHHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIV--SASGDRT  341 (499)
T ss_pred             hhh--HHhhhcceeEEEEEe---CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEE--EecCCce
Confidence            544  111111111111110   0001111112233344443222  22334455554  23334445333  5666899


Q ss_pred             EEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCc
Q 021291          174 VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE  253 (314)
Q Consensus       174 i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~  253 (314)
                      |++|++.+++.++++.        +|.    ..+.|++ |.     |+ ++++|+.|.+|++||+.. +.++..++||.+
T Consensus       342 ikvW~~st~efvRtl~--------gHk----RGIAClQ-Yr-----~r-lvVSGSSDntIRlwdi~~-G~cLRvLeGHEe  401 (499)
T KOG0281|consen  342 IKVWSTSTCEFVRTLN--------GHK----RGIACLQ-YR-----DR-LVVSGSSDNTIRLWDIEC-GACLRVLEGHEE  401 (499)
T ss_pred             EEEEeccceeeehhhh--------ccc----ccceehh-cc-----Ce-EEEecCCCceEEEEeccc-cHHHHHHhchHH
Confidence            9999999999999998        783    3455665 65     55 999999999999999998 999999999999


Q ss_pred             ceEEEEEeCCCCeEEEecCCCcEEEEecCCCeee
Q 021291          254 PVLCLSIDESCNGGISGGADQKIVLYNLDHSTYV  287 (314)
Q Consensus       254 ~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~  287 (314)
                      -|.++.|+..  .+++|+.||+|++||+..+...
T Consensus       402 LvRciRFd~k--rIVSGaYDGkikvWdl~aaldp  433 (499)
T KOG0281|consen  402 LVRCIRFDNK--RIVSGAYDGKIKVWDLQAALDP  433 (499)
T ss_pred             hhhheeecCc--eeeeccccceEEEEecccccCC
Confidence            9999999876  7899999999999999877543

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.7e-31  Score=221.13  Aligned_cols=214  Identities=21%  Similarity=0.359  Sum_probs=177.5

Q ss_pred             eEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEE
Q 021291           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC   90 (314)
Q Consensus        11 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~i   90 (314)
                      +-..+||...+++++++|||+++|||+.||.|+|||...+-|..++..|..  .|+.+.|+.  .++.+++++.||+|+.
T Consensus       343 VlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts--~Vt~v~f~~--~g~~llssSLDGtVRA  418 (893)
T KOG0291|consen  343 VLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTS--GVTAVQFTA--RGNVLLSSSLDGTVRA  418 (893)
T ss_pred             eeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCC--ceEEEEEEe--cCCEEEEeecCCeEEe
Confidence            344569999999999999999999999999999999999999999999994  499999999  9999999999999999


Q ss_pred             EeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecC
Q 021291           91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ  170 (314)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  170 (314)
                      ||+...+..+  .++.+....-.|                                       ++..|.|.  ++++|+.
T Consensus       419 wDlkRYrNfR--Tft~P~p~Qfsc---------------------------------------vavD~sGe--lV~AG~~  455 (893)
T KOG0291|consen  419 WDLKRYRNFR--TFTSPEPIQFSC---------------------------------------VAVDPSGE--LVCAGAQ  455 (893)
T ss_pred             eeecccceee--eecCCCceeeeE---------------------------------------EEEcCCCC--EEEeecc
Confidence            9998876544  333222222222                                       45667776  3345665


Q ss_pred             cC-eEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeee
Q 021291          171 LS-EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK  249 (314)
Q Consensus       171 d~-~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~  249 (314)
                      |. .|++|++++|+.+-.+.        ||    .+++.++. |+|.   |. .|++|+.|.+|++||+-.....+.++.
T Consensus       456 d~F~IfvWS~qTGqllDiLs--------GH----EgPVs~l~-f~~~---~~-~LaS~SWDkTVRiW~if~s~~~vEtl~  518 (893)
T KOG0291|consen  456 DSFEIFVWSVQTGQLLDILS--------GH----EGPVSGLS-FSPD---GS-LLASGSWDKTVRIWDIFSSSGTVETLE  518 (893)
T ss_pred             ceEEEEEEEeecCeeeehhc--------CC----CCcceeeE-Eccc---cC-eEEeccccceEEEEEeeccCceeeeEe
Confidence            54 69999999999999998        88    55777776 9998   44 999999999999999986444566665


Q ss_pred             cCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291          250 VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF  289 (314)
Q Consensus       250 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~  289 (314)
                       +...++.++|.|+|+.|+++..||.|.+||...+.++..
T Consensus       519 -i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~  557 (893)
T KOG0291|consen  519 -IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGS  557 (893)
T ss_pred             -eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeecc
Confidence             578899999999999999999999999999998877743

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=9.8e-32  Score=196.43  Aligned_cols=264  Identities=18%  Similarity=0.270  Sum_probs=200.0

Q ss_pred             eEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEE--eccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSS--WVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (314)
Q Consensus        11 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v   88 (314)
                      -+.+++|...|.+++|+.+|..|++|+.|+++++|+++..+....+  ++|.  +.|-.++|.|. ..+.|++++.|.+|
T Consensus        13 ~r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~--~svdql~w~~~-~~d~~atas~dk~i   89 (313)
T KOG1407|consen   13 RRELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHT--DSVDQLCWDPK-HPDLFATASGDKTI   89 (313)
T ss_pred             hHHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCC--cchhhheeCCC-CCcceEEecCCceE
Confidence            3677899999999999999999999999999999999987655544  4565  45999999986 55899999999999


Q ss_pred             EEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCC---CCcceeeccCCceeee-cCCCCCC-ceeccCCCce
Q 021291           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN---EPKDCYEREVGETVDT-DSLCDSK-DDVPAEGPKY  163 (314)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~  163 (314)
                      ++||++.+++..    ........   +...+++.......+   .....++.+..+.... .+..... ++|+.+++.+
T Consensus        90 r~wd~r~~k~~~----~i~~~~en---i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~F  162 (313)
T KOG1407|consen   90 RIWDIRSGKCTA----RIETKGEN---INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLF  162 (313)
T ss_pred             EEEEeccCcEEE----EeeccCcc---eEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEE
Confidence            999999997644    22221111   122223333222222   2233334444333222 2222222 8888777766


Q ss_pred             EEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCC
Q 021291          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI  243 (314)
Q Consensus       164 ~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~  243 (314)
                      ++.+|  .|+|.|......+++..++        +|+    ..|+++. |+|+   |+ ++|+|+.|..+.+||++. -.
T Consensus       163 flt~G--lG~v~ILsypsLkpv~si~--------AH~----snCicI~-f~p~---Gr-yfA~GsADAlvSLWD~~E-Li  222 (313)
T KOG1407|consen  163 FLTNG--LGCVEILSYPSLKPVQSIK--------AHP----SNCICIE-FDPD---GR-YFATGSADALVSLWDVDE-LI  222 (313)
T ss_pred             EEecC--CceEEEEeccccccccccc--------cCC----cceEEEE-ECCC---Cc-eEeeccccceeeccChhH-hh
Confidence            66555  4999999999999999998        784    5799998 9998   66 999999999999999997 77


Q ss_pred             ceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEeeeeeeecCCCceeceeeccc
Q 021291          244 PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFGIGFVCDQEGNKFGTTWHIR  309 (314)
Q Consensus       244 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  309 (314)
                      +++.+.-+.-+|..|.|+-+|++||++|.|..|-|=++++|.+++.+.     -++..+...||+-
T Consensus       223 C~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-----~~~~t~tVAWHPk  283 (313)
T KOG1407|consen  223 CERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-----CEGPTFTVAWHPK  283 (313)
T ss_pred             hheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-----ccCCceeEEecCC
Confidence            888999999999999999999999999999999999999999987642     3455566666653

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-31  Score=204.54  Aligned_cols=222  Identities=17%  Similarity=0.265  Sum_probs=187.0

Q ss_pred             CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v   88 (314)
                      ++++.+.||...|.++.|-|.|.++++++.|.+|+.|++.++.++.++.+|.  ..|.-++.+.  ||..+++++.|.+|
T Consensus       184 ~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~--ewvr~v~v~~--DGti~As~s~dqtl  259 (406)
T KOG0295|consen  184 RCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHS--EWVRMVRVNQ--DGTIIASCSNDQTL  259 (406)
T ss_pred             HHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCch--HhEEEEEecC--CeeEEEecCCCceE
Confidence            4567788999999999999999999999999999999999999999999998  5699999998  99999999999999


Q ss_pred             EEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEee
Q 021291           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG  168 (314)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  168 (314)
                      ++|-+.++++..  ++..+.++.....+.+.........+.+                          +.++..+ +.++
T Consensus       260 ~vW~~~t~~~k~--~lR~hEh~vEci~wap~~~~~~i~~at~--------------------------~~~~~~~-l~s~  310 (406)
T KOG0295|consen  260 RVWVVATKQCKA--ELREHEHPVECIAWAPESSYPSISEATG--------------------------STNGGQV-LGSG  310 (406)
T ss_pred             EEEEeccchhhh--hhhccccceEEEEecccccCcchhhccC--------------------------CCCCccE-EEee
Confidence            999999997755  6666666666666655433211111110                          0112233 3489


Q ss_pred             cCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEee
Q 021291          169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM  248 (314)
Q Consensus       169 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~  248 (314)
                      +.|++|++||+.++.++.++.        +|..    .+..++ |+|.   |+ ||+++..|+++++||+++ .+++..+
T Consensus       311 SrDktIk~wdv~tg~cL~tL~--------ghdn----wVr~~a-f~p~---Gk-yi~ScaDDktlrvwdl~~-~~cmk~~  372 (406)
T KOG0295|consen  311 SRDKTIKIWDVSTGMCLFTLV--------GHDN----WVRGVA-FSPG---GK-YILSCADDKTLRVWDLKN-LQCMKTL  372 (406)
T ss_pred             cccceEEEEeccCCeEEEEEe--------cccc----eeeeeE-EcCC---Ce-EEEEEecCCcEEEEEecc-ceeeecc
Confidence            999999999999999999999        8855    666676 9997   66 999999999999999999 9999999


Q ss_pred             ecCCcceEEEEEeCCCCeEEEecCCCcEEEEec
Q 021291          249 KVHLEPVLCLSIDESCNGGISGGADQKIVLYNL  281 (314)
Q Consensus       249 ~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~  281 (314)
                      ..|..-|++++|+.+..+++||+-|..+++|.-
T Consensus       373 ~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  373 EAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             CCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence            999999999999999999999999999999963

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.5e-32  Score=219.30  Aligned_cols=253  Identities=16%  Similarity=0.221  Sum_probs=214.3

Q ss_pred             ceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEE
Q 021291           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (314)
Q Consensus        10 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~   89 (314)
                      .-+.+..|+..|.++.|+|....++++-.+|.|.|||.++...++.+....  .+|.+..|-+  ..+.+++|++|..|+
T Consensus         5 ~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~--~PvRa~kfia--RknWiv~GsDD~~Ir   80 (794)
T KOG0276|consen    5 FKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSE--VPVRAAKFIA--RKNWIVTGSDDMQIR   80 (794)
T ss_pred             hhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecc--cchhhheeee--ccceEEEecCCceEE
Confidence            345566799999999999999999999999999999999999999998877  4599999999  678999999999999


Q ss_pred             EEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCceEE
Q 021291           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMA  165 (314)
Q Consensus        90 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~  165 (314)
                      +|+.++++.+.  .++.+..........+. .|......+....+.|+.+........+.+|..    ++|.|...+-++
T Consensus        81 Vfnynt~ekV~--~FeAH~DyIR~iavHPt-~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFa  157 (794)
T KOG0276|consen   81 VFNYNTGEKVK--TFEAHSDYIRSIAVHPT-LPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFA  157 (794)
T ss_pred             EEecccceeeE--EeeccccceeeeeecCC-CCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCcccee
Confidence            99999998765  44444444444444333 233444556677888999999999999999999    899999888876


Q ss_pred             EeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCce
Q 021291          166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL  245 (314)
Q Consensus       166 ~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~  245 (314)
                       +++.|++|++|.+.+..+..++.        +|..    .+.++. |-|-+. .. +|++|+.|.+|+|||.++ ..++
T Consensus       158 -S~sLDrTVKVWslgs~~~nfTl~--------gHek----GVN~Vd-yy~~gd-kp-ylIsgaDD~tiKvWDyQt-k~CV  220 (794)
T KOG0276|consen  158 -SASLDRTVKVWSLGSPHPNFTLE--------GHEK----GVNCVD-YYTGGD-KP-YLISGADDLTIKVWDYQT-KSCV  220 (794)
T ss_pred             -eeeccccEEEEEcCCCCCceeee--------cccc----CcceEE-eccCCC-cc-eEEecCCCceEEEeecch-HHHH
Confidence             78889999999999999999998        8844    566776 777531 33 999999999999999999 9999


Q ss_pred             EeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCee
Q 021291          246 TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTY  286 (314)
Q Consensus       246 ~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~  286 (314)
                      +++.||...|..+.|+|.-..++|||.||++|||+-.+-+.
T Consensus       221 ~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~l  261 (794)
T KOG0276|consen  221 QTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKL  261 (794)
T ss_pred             HHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceeh
Confidence            99999999999999999999999999999999999776554

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.9e-32  Score=208.44  Aligned_cols=257  Identities=16%  Similarity=0.212  Sum_probs=183.9

Q ss_pred             CCCCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCC---eEEEEEeccCCcccEEEEEEcccCCCCeEEE
Q 021291            5 PPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH---RTVSSSWVHSAAHGIVSVATGPSIGLNKVIS   81 (314)
Q Consensus         5 ~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s   81 (314)
                      ..|.+..++|..|+++|+.+.||++|+|||+++.|.+..+|++...   +...++.+|..+  |..+.|+|  |.++|++
T Consensus       211 qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~--V~yi~wSP--DdryLla  286 (519)
T KOG0293|consen  211 QIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQP--VSYIMWSP--DDRYLLA  286 (519)
T ss_pred             cCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCc--eEEEEECC--CCCeEEe
Confidence            4567888999999999999999999999999999999999997654   447788899854  99999999  9999999


Q ss_pred             eecCCeEEEEeCCCCCCCCCCeeee-ecceeeEEEeeeeeccccccccCC---------CCc---------ceeecc---
Q 021291           82 QGRDGTVKCWDIENGGLSSNPSLTI-KTNSYHFCKLSLVKEPYANAKQAN---------EPK---------DCYERE---  139 (314)
Q Consensus        82 ~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------~~~---------~~~~~~---  139 (314)
                      |+.|..+.+||+.++.+..  .+.. .......|.+.+++........+.         ...         .++++.   
T Consensus       287 Cg~~e~~~lwDv~tgd~~~--~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~  364 (519)
T KOG0293|consen  287 CGFDEVLSLWDVDTGDLRH--LYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITY  364 (519)
T ss_pred             cCchHheeeccCCcchhhh--hcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcC
Confidence            9999999999999998765  2222 234555666655543322111111         000         111221   


Q ss_pred             CCceee------------------e-cCCCCCC---ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCC
Q 021291          140 VGETVD------------------T-DSLCDSK---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSP  197 (314)
Q Consensus       140 ~~~~~~------------------~-~~~~~~~---~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  197 (314)
                      .++.+.                  . ....+..   .++|.+++..++  .-.+..+++||++....+..+.        
T Consensus       365 Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~Lv--nL~~qei~LWDl~e~~lv~kY~--------  434 (519)
T KOG0293|consen  365 DGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALV--NLQDQEIHLWDLEENKLVRKYF--------  434 (519)
T ss_pred             CCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEE--EcccCeeEEeecchhhHHHHhh--------
Confidence            111000                  0 0111222   556677765443  4446889999999888887777        


Q ss_pred             CcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCC-CeEEEecCCCcE
Q 021291          198 NFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESC-NGGISGGADQKI  276 (314)
Q Consensus       198 ~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~i  276 (314)
                      ||....  .+..- ||---   +..++++|++|+.|+||+..+ ++++..+.||...|++++|+|.. ..+|++|+||+|
T Consensus       435 Ghkq~~--fiIrS-CFgg~---~~~fiaSGSED~kvyIWhr~s-gkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtI  507 (519)
T KOG0293|consen  435 GHKQGH--FIIRS-CFGGG---NDKFIASGSEDSKVYIWHRIS-GKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTI  507 (519)
T ss_pred             cccccc--eEEEe-ccCCC---CcceEEecCCCceEEEEEccC-CceeEeecCCcceeeEEecCCCCHHHhhccCCCCeE
Confidence            775422  23322 26543   212999999999999999998 99999999999999999998855 468999999999


Q ss_pred             EEEecCCC
Q 021291          277 VLYNLDHS  284 (314)
Q Consensus       277 ~iw~~~~~  284 (314)
                      |||.....
T Consensus       508 RIWg~~~~  515 (519)
T KOG0293|consen  508 RIWGPSDN  515 (519)
T ss_pred             EEecCCcc
Confidence            99987643

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=9.7e-33  Score=213.29  Aligned_cols=245  Identities=17%  Similarity=0.275  Sum_probs=188.8

Q ss_pred             EecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEe
Q 021291           13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD   92 (314)
Q Consensus        13 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd   92 (314)
                      .+++|.++|+++.|+++|.++++|+.+|.|++|+.. ...++.++.|.. ..|.+++|+|  +...|+++++||+|+|||
T Consensus       133 ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn-mnnVk~~~ahh~-eaIRdlafSp--nDskF~t~SdDg~ikiWd  208 (464)
T KOG0284|consen  133 ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN-MNNVKIIQAHHA-EAIRDLAFSP--NDSKFLTCSDDGTIKIWD  208 (464)
T ss_pred             HhhhhcccceeEEEccCCCEEEEcCCCceEEecccc-hhhhHHhhHhhh-hhhheeccCC--CCceeEEecCCCeEEEEe
Confidence            456899999999999999999999999999999965 344555555542 4499999999  779999999999999999


Q ss_pred             CCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCceEEEee
Q 021291           93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAG  168 (314)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g  168 (314)
                      ....+...  ++..+.-....+.+.+..........+. .+..|+.+.+..+. .+.+|..    +.|+++++.++  ++
T Consensus       209 f~~~kee~--vL~GHgwdVksvdWHP~kgLiasgskDn-lVKlWDprSg~cl~-tlh~HKntVl~~~f~~n~N~Ll--t~  282 (464)
T KOG0284|consen  209 FRMPKEER--VLRGHGWDVKSVDWHPTKGLIASGSKDN-LVKLWDPRSGSCLA-TLHGHKNTVLAVKFNPNGNWLL--TG  282 (464)
T ss_pred             ccCCchhh--eeccCCCCcceeccCCccceeEEccCCc-eeEeecCCCcchhh-hhhhccceEEEEEEcCCCCeeE--Ec
Confidence            98775433  4555555555555554443333322222 55666666655443 3445555    88999995443  78


Q ss_pred             cCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEee
Q 021291          169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM  248 (314)
Q Consensus       169 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~  248 (314)
                      +.|..++++|+++.+.+.++.        +|..    .++++. |+|-..+   +|.+|+.||.|..|.+.. .+++..+
T Consensus       283 skD~~~kv~DiR~mkEl~~~r--------~Hkk----dv~~~~-WhP~~~~---lftsgg~Dgsvvh~~v~~-~~p~~~i  345 (464)
T KOG0284|consen  283 SKDQSCKVFDIRTMKELFTYR--------GHKK----DVTSLT-WHPLNES---LFTSGGSDGSVVHWVVGL-EEPLGEI  345 (464)
T ss_pred             cCCceEEEEehhHhHHHHHhh--------cchh----hheeec-ccccccc---ceeeccCCCceEEEeccc-cccccCC
Confidence            899999999999988888888        7844    667776 9998442   899999999999999985 5555555


Q ss_pred             e-cCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCC
Q 021291          249 K-VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS  284 (314)
Q Consensus       249 ~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~  284 (314)
                      . +|...|++++|+|-|..|++|+.|.++++|.-..+
T Consensus       346 ~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp  382 (464)
T KOG0284|consen  346 PPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRP  382 (464)
T ss_pred             CcccccceeeeeccccceeEeecCCCcceeeeccCCC
Confidence            4 89999999999999999999999999999976543

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=8.5e-31  Score=195.10  Aligned_cols=245  Identities=17%  Similarity=0.200  Sum_probs=189.1

Q ss_pred             CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v   88 (314)
                      +-..+++||+++|..+.|.+|++.|++++.|.+|+.||.++|++.+.+++|.  ..|..+.-+.. ...++.+++.||++
T Consensus        81 eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~--~~vNs~~p~rr-g~~lv~SgsdD~t~  157 (338)
T KOG0265|consen   81 ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHT--SFVNSLDPSRR-GPQLVCSGSDDGTL  157 (338)
T ss_pred             cceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhcccc--ceeeecCcccc-CCeEEEecCCCceE
Confidence            3456788999999999999999999999999999999999999999999998  44888884442 33466689999999


Q ss_pred             EEEeCCCCCCCCCCeeeeecceeeEEEeeeeecccc---ccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCC
Q 021291           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA---NAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGP  161 (314)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  161 (314)
                      ++||+++.+.++.+.-     ..  ...++.+....   ..........+|+++.... ...+.+|.+    ++.+++|.
T Consensus       158 kl~D~R~k~~~~t~~~-----ky--qltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~-~~~lsGh~DtIt~lsls~~gs  229 (338)
T KOG0265|consen  158 KLWDIRKKEAIKTFEN-----KY--QLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDG-LYTLSGHADTITGLSLSRYGS  229 (338)
T ss_pred             EEEeecccchhhcccc-----ce--eEEEEEecccccceeeccccCceeeeccccCcc-eEEeecccCceeeEEeccCCC
Confidence            9999998876652211     11  11222222222   2333444558888876543 345678877    88999998


Q ss_pred             ceEEEeecCcCeEEEEecCCC----ceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEE
Q 021291          162 KYMAVAGEQLSEVEIWDLNTA----ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD  237 (314)
Q Consensus       162 ~~~~~~g~~d~~i~vwd~~~~----~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd  237 (314)
                      +++  +-+.|.++++||++..    +++..+.        +|.-...-....+. |+|+   +. .+.+|+.|..+++||
T Consensus       230 ~ll--snsMd~tvrvwd~rp~~p~~R~v~if~--------g~~hnfeknlL~cs-wsp~---~~-~i~ags~dr~vyvwd  294 (338)
T KOG0265|consen  230 FLL--SNSMDNTVRVWDVRPFAPSQRCVKIFQ--------GHIHNFEKNLLKCS-WSPN---GT-KITAGSADRFVYVWD  294 (338)
T ss_pred             ccc--cccccceEEEEEecccCCCCceEEEee--------cchhhhhhhcceee-ccCC---CC-ccccccccceEEEee
Confidence            776  7888999999999843    3455565        55443344455555 9998   44 899999999999999


Q ss_pred             ccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEe
Q 021291          238 IRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN  280 (314)
Q Consensus       238 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~  280 (314)
                      ... ...+..+.||.+.|++++|+|...+|.+++.|++|++=+
T Consensus       295 ~~~-r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  295 TTS-RRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE  336 (338)
T ss_pred             ccc-ccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence            997 788999999999999999999999999999999998744

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.6e-29  Score=203.04  Aligned_cols=266  Identities=21%  Similarity=0.354  Sum_probs=198.2

Q ss_pred             eEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEE
Q 021291           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC   90 (314)
Q Consensus        11 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~i   90 (314)
                      ++++++|.++|++++|+|++++|++++.||.|++|++.+++....+..|...  +..+.|+|  +++.|++++.||.|++
T Consensus         2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~--i~~~~~~~--~~~~l~~~~~~~~i~i   77 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGP--VRDVAASA--DGTYLASGSSDKTIRL   77 (289)
T ss_pred             chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcc--eeEEEECC--CCCEEEEEcCCCeEEE
Confidence            4678899999999999999999999999999999999988888888888744  89999999  8889999999999999


Q ss_pred             EeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCceEEE
Q 021291           91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAV  166 (314)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~  166 (314)
                      ||+.+++...  .+..+........+... ..........+...+|++...+... .+..|..    ++|+|++.. ++ 
T Consensus        78 ~~~~~~~~~~--~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~-l~-  151 (289)
T cd00200          78 WDLETGECVR--TLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLT-TLRGHTDWVNSVAFSPDGTF-VA-  151 (289)
T ss_pred             EEcCcccceE--EEeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEE-EeccCCCcEEEEEEcCcCCE-EE-
Confidence            9999865433  22222222333333322 1112222225666777776544332 2334543    888898653 33 


Q ss_pred             eecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceE
Q 021291          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (314)
Q Consensus       167 ~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~  246 (314)
                      +++.|+.|++||+++++....+.        .|    ...+.++. |+|+   ++ .+++++.++.|++||++. ++++.
T Consensus       152 ~~~~~~~i~i~d~~~~~~~~~~~--------~~----~~~i~~~~-~~~~---~~-~l~~~~~~~~i~i~d~~~-~~~~~  213 (289)
T cd00200         152 SSSQDGTIKLWDLRTGKCVATLT--------GH----TGEVNSVA-FSPD---GE-KLLSSSSDGTIKLWDLST-GKCLG  213 (289)
T ss_pred             EEcCCCcEEEEEccccccceeEe--------cC----ccccceEE-ECCC---cC-EEEEecCCCcEEEEECCC-Cceec
Confidence            56568999999999888877776        44    33677787 9998   44 688888899999999997 78888


Q ss_pred             eeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEee-------eeeeecCCCceece
Q 021291          247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFG-------IGFVCDQEGNKFGT  304 (314)
Q Consensus       247 ~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~-------~~~~~~~~~~~~~~  304 (314)
                      .+..|...+.++.|++++.++++++.||.|++|++.+++.+...       ..+.+++++..+.+
T Consensus       214 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  278 (289)
T cd00200         214 TLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLAS  278 (289)
T ss_pred             chhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEE
Confidence            88889999999999999888898888999999999987766543       33445565554443

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=5.3e-30  Score=216.07  Aligned_cols=214  Identities=19%  Similarity=0.302  Sum_probs=160.8

Q ss_pred             EecCCCCceeEEEEcc-CCCEEEEecCCCeEEEEeCCCC-------eEEEEEeccCCcccEEEEEEcccCCC-CeEEEee
Q 021291           13 VLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQH-------RTVSSSWVHSAAHGIVSVATGPSIGL-NKVISQG   83 (314)
Q Consensus        13 ~l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~   83 (314)
                      .+.||.+.|++++|+| ++++|++|+.|++|++||+.++       +.+..+.+|..  .|.+++|+|  ++ ++|++++
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~--~V~~l~f~P--~~~~iLaSgs  145 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTK--KVGIVSFHP--SAMNVLASAG  145 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCC--cEEEEEeCc--CCCCEEEEEe
Confidence            4789999999999999 8899999999999999999764       34667888884  499999999  64 6899999


Q ss_pred             cCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCce
Q 021291           84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY  163 (314)
Q Consensus        84 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (314)
                      .|++|+|||+++++...    .+..+.....  +                                    ++|+|++..+
T Consensus       146 ~DgtVrIWDl~tg~~~~----~l~~h~~~V~--s------------------------------------la~spdG~lL  183 (493)
T PTZ00421        146 ADMVVNVWDVERGKAVE----VIKCHSDQIT--S------------------------------------LEWNLDGSLL  183 (493)
T ss_pred             CCCEEEEEECCCCeEEE----EEcCCCCceE--E------------------------------------EEEECCCCEE
Confidence            99999999999875422    2222111110  0                                    5688998643


Q ss_pred             EEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEe---ecCCcEEEEEccC
Q 021291          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG---YEDGSILVWDIRN  240 (314)
Q Consensus       164 ~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g---~~dg~i~vwd~~~  240 (314)
                      +  +++.|++|++||+++++.+..+.        +|...   ....+. |.|+   +..++.+|   +.|+.|++||+++
T Consensus       184 a--tgs~Dg~IrIwD~rsg~~v~tl~--------~H~~~---~~~~~~-w~~~---~~~ivt~G~s~s~Dr~VklWDlr~  246 (493)
T PTZ00421        184 C--TTSKDKKLNIIDPRDGTIVSSVE--------AHASA---KSQRCL-WAKR---KDLIITLGCSKSQQRQIMLWDTRK  246 (493)
T ss_pred             E--EecCCCEEEEEECCCCcEEEEEe--------cCCCC---cceEEE-EcCC---CCeEEEEecCCCCCCeEEEEeCCC
Confidence            3  67789999999999999888877        66432   222344 8876   33244444   3579999999998


Q ss_pred             CCCceEeeecCC-cceEEEEEeCCCCeEEEec-CCCcEEEEecCCCeeeEe
Q 021291          241 PGIPLTAMKVHL-EPVLCLSIDESCNGGISGG-ADQKIVLYNLDHSTYVLF  289 (314)
Q Consensus       241 ~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~s-~dg~i~iw~~~~~~~~~~  289 (314)
                      ...++.....+. ..+....|++++.+|++++ .|+.|++||+.+++....
T Consensus       247 ~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~  297 (493)
T PTZ00421        247 MASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFC  297 (493)
T ss_pred             CCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEE
Confidence            666666555443 3555667899999998887 599999999998876554

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=5.1e-32  Score=213.50  Aligned_cols=248  Identities=17%  Similarity=0.261  Sum_probs=191.9

Q ss_pred             CCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCC-CeEEEeecC
Q 021291            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGL-NKVISQGRD   85 (314)
Q Consensus         7 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~d   85 (314)
                      ..+++++|.||..+|.+++|+++|..+++++.|+.|++||+++|+++..+...   ..++|+.|.|  ++ +.|++|+.|
T Consensus       247 ~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~---~~~~cvkf~p--d~~n~fl~G~sd  321 (503)
T KOG0282|consen  247 DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLD---KVPTCVKFHP--DNQNIFLVGGSD  321 (503)
T ss_pred             CcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecC---CCceeeecCC--CCCcEEEEecCC
Confidence            35789999999999999999999999999999999999999999999998654   4589999999  65 889999999


Q ss_pred             CeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecC--CCCCC--ceeccCCC
Q 021291           86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDS--LCDSK--DDVPAEGP  161 (314)
Q Consensus        86 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~  161 (314)
                      +.|+.||+++++.++  .+.-+........|-..+ .......+.....+|..+..-.+....  ..|.-  +..+|+++
T Consensus       322 ~ki~~wDiRs~kvvq--eYd~hLg~i~~i~F~~~g-~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~  398 (503)
T KOG0282|consen  322 KKIRQWDIRSGKVVQ--EYDRHLGAILDITFVDEG-RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGK  398 (503)
T ss_pred             CcEEEEeccchHHHH--HHHhhhhheeeeEEccCC-ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCC
Confidence            999999999998765  222222222222222222 223344445577777776654443332  22333  88899997


Q ss_pred             ceEEEeecCcCeEEEEecCCCce---eeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEc
Q 021291          162 KYMAVAGEQLSEVEIWDLNTAER---CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI  238 (314)
Q Consensus       162 ~~~~~~g~~d~~i~vwd~~~~~~---~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~  238 (314)
                      .++  +-+.|+.|.+|.+...-.   ...|.        ||..  .+....+. |+||   |+ +|++|+.||.+.+||.
T Consensus       399 ~~~--aQs~dN~i~ifs~~~~~r~nkkK~fe--------Gh~v--aGys~~v~-fSpD---G~-~l~SGdsdG~v~~wdw  461 (503)
T KOG0282|consen  399 WFA--AQSMDNYIAIFSTVPPFRLNKKKRFE--------GHSV--AGYSCQVD-FSPD---GR-TLCSGDSDGKVNFWDW  461 (503)
T ss_pred             eeh--hhccCceEEEEecccccccCHhhhhc--------ceec--cCceeeEE-EcCC---CC-eEEeecCCccEEEeec
Confidence            554  577899999998764332   23444        6754  56677787 9998   66 9999999999999999


Q ss_pred             cCCCCceEeeecCCcceEEEEEeCCC-CeEEEecCCCcEEEEe
Q 021291          239 RNPGIPLTAMKVHLEPVLCLSIDESC-NGGISGGADQKIVLYN  280 (314)
Q Consensus       239 ~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~i~iw~  280 (314)
                      ++ .+.+..+++|..++..+.|+|.. ..+||++.||.|++|+
T Consensus       462 kt-~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  462 KT-TKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             hh-hhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            98 88999999999999999998754 4689999999999996

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.8e-32  Score=211.76  Aligned_cols=210  Identities=17%  Similarity=0.303  Sum_probs=170.9

Q ss_pred             CCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCC
Q 021291           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG   96 (314)
Q Consensus        17 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~   96 (314)
                      -+.+|..+.|.|+|+.|++|+..|.+.+|+...-.....++.|.  .+|.++.|++  ++.+++||+.+|.|++|+.+-.
T Consensus        95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHD--s~Vr~m~ws~--~g~wmiSgD~gG~iKyWqpnmn  170 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHD--SPVRTMKWSH--NGTWMISGDKGGMIKYWQPNMN  170 (464)
T ss_pred             cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhc--ccceeEEEcc--CCCEEEEcCCCceEEecccchh
Confidence            34578999999999999999999999999975544444557788  4599999999  9999999999999999998765


Q ss_pred             CCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEE
Q 021291           97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI  176 (314)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v  176 (314)
                      ....  ....+...+. +                                       ++|+|....++  +++.||+|+|
T Consensus       171 nVk~--~~ahh~eaIR-d---------------------------------------lafSpnDskF~--t~SdDg~iki  206 (464)
T KOG0284|consen  171 NVKI--IQAHHAEAIR-D---------------------------------------LAFSPNDSKFL--TCSDDGTIKI  206 (464)
T ss_pred             hhHH--hhHhhhhhhh-e---------------------------------------eccCCCCceeE--EecCCCeEEE
Confidence            3211  1011111111 1                                       67888765544  6788999999


Q ss_pred             EecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceE
Q 021291          177 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVL  256 (314)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~  256 (314)
                      ||....+....+.        ||..    .+.+++ |+|...    +|++|+.|..|++||.++ +.++.++.+|...|.
T Consensus       207 Wdf~~~kee~vL~--------GHgw----dVksvd-WHP~kg----LiasgskDnlVKlWDprS-g~cl~tlh~HKntVl  268 (464)
T KOG0284|consen  207 WDFRMPKEERVLR--------GHGW----DVKSVD-WHPTKG----LIASGSKDNLVKLWDPRS-GSCLATLHGHKNTVL  268 (464)
T ss_pred             EeccCCchhheec--------cCCC----Ccceec-cCCccc----eeEEccCCceeEeecCCC-cchhhhhhhccceEE
Confidence            9999888877777        7854    566676 999843    899999999999999999 999999999999999


Q ss_pred             EEEEeCCCCeEEEecCCCcEEEEecCCCeeeEeeee
Q 021291          257 CLSIDESCNGGISGGADQKIVLYNLDHSTYVLFGIG  292 (314)
Q Consensus       257 ~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~  292 (314)
                      .+.|++++++|+|+|.|..++++|+++-+.++...+
T Consensus       269 ~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~  304 (464)
T KOG0284|consen  269 AVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRG  304 (464)
T ss_pred             EEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhc
Confidence            999999999999999999999999997777665444

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=2.5e-30  Score=189.70  Aligned_cols=246  Identities=19%  Similarity=0.269  Sum_probs=186.0

Q ss_pred             EecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEe
Q 021291           13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD   92 (314)
Q Consensus        13 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd   92 (314)
                      .|+||+.+++.+.|+.+|.+|++++.|.+..||-..+|+.+-++.+|.++  |+|+....  +.+.+++|+.|.++++||
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGa--vW~~Did~--~s~~liTGSAD~t~kLWD   80 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGA--VWCCDIDW--DSKHLITGSADQTAKLWD   80 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCce--EEEEEecC--CcceeeeccccceeEEEE
Confidence            47899999999999999999999999999999999899999999999966  99999998  889999999999999999


Q ss_pred             CCCCCCCCCCeeeeecc-eeeEEEeeeeeccccccc----cCCCCcceeeccCC-------ceeeecCCCCCC---ceec
Q 021291           93 IENGGLSSNPSLTIKTN-SYHFCKLSLVKEPYANAK----QANEPKDCYEREVG-------ETVDTDSLCDSK---DDVP  157 (314)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-------~~~~~~~~~~~~---~~~~  157 (314)
                      +++++++.    ..+.. +...+.|+..+.......    ...+...+++++..       ..........+.   +-|.
T Consensus        81 v~tGk~la----~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg  156 (327)
T KOG0643|consen   81 VETGKQLA----TWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG  156 (327)
T ss_pred             cCCCcEEE----EeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence            99998643    33332 334444444443322211    12233444555422       112222222222   7899


Q ss_pred             cCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEE
Q 021291          158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD  237 (314)
Q Consensus       158 ~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd  237 (314)
                      |-++.++  +|..||.|..||++++.....-..       -|    ...+..++ ++||..    ++++++.|.+-++||
T Consensus       157 ~l~~~ii--~Ghe~G~is~~da~~g~~~v~s~~-------~h----~~~Ind~q-~s~d~T----~FiT~s~Dttakl~D  218 (327)
T KOG0643|consen  157 PLGETII--AGHEDGSISIYDARTGKELVDSDE-------EH----SSKINDLQ-FSRDRT----YFITGSKDTTAKLVD  218 (327)
T ss_pred             ccCCEEE--EecCCCcEEEEEcccCceeeechh-------hh----cccccccc-ccCCcc----eEEecccCccceeee
Confidence            9998765  688899999999999866544332       34    44778887 999844    999999999999999


Q ss_pred             ccCCCC------------------------------------------------------ceEeeecCCcceEEEEEeCC
Q 021291          238 IRNPGI------------------------------------------------------PLTAMKVHLEPVLCLSIDES  263 (314)
Q Consensus       238 ~~~~~~------------------------------------------------------~~~~~~~h~~~v~~~~~~~~  263 (314)
                      .++...                                                      .+..+++|=++|++|+|+|+
T Consensus       219 ~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPd  298 (327)
T KOG0643|consen  219 VRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPD  298 (327)
T ss_pred             ccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCC
Confidence            875110                                                      12235678999999999999


Q ss_pred             CCeEEEecCCCcEEEEecCCC
Q 021291          264 CNGGISGGADQKIVLYNLDHS  284 (314)
Q Consensus       264 ~~~l~s~s~dg~i~iw~~~~~  284 (314)
                      |+..++|+.||.||+.-++..
T Consensus       299 GksYsSGGEDG~VR~h~Fd~~  319 (327)
T KOG0643|consen  299 GKSYSSGGEDGYVRLHHFDSN  319 (327)
T ss_pred             CcccccCCCCceEEEEEeccc
Confidence            999999999999999876643

>PTZ00420 coronin; Provisional

Probab=99.98  E-value=1.7e-29  Score=214.04  Aligned_cols=216  Identities=19%  Similarity=0.222  Sum_probs=159.1

Q ss_pred             CceEEecCCCCceeEEEEccC-CCEEEEecCCCeEEEEeCCCCe--------EEEEEeccCCcccEEEEEEcccCCCCe-
Q 021291            9 DPVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHR--------TVSSSWVHSAAHGIVSVATGPSIGLNK-   78 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~-   78 (314)
                      .++..+.+|.+.|.+++|+|+ +++||+|+.||+|+|||+.++.        .+..+.+|..  .|.+++|+|  ++.. 
T Consensus        65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~--~V~sVaf~P--~g~~i  140 (568)
T PTZ00420         65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK--KISIIDWNP--MNYYI  140 (568)
T ss_pred             ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCC--cEEEEEECC--CCCeE
Confidence            467889999999999999996 7899999999999999997542        3446777874  499999999  7665 


Q ss_pred             EEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceecc
Q 021291           79 VISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPA  158 (314)
Q Consensus        79 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (314)
                      |++++.|++|+|||+++++...    .+.......+                                       ++|+|
T Consensus       141 LaSgS~DgtIrIWDl~tg~~~~----~i~~~~~V~S---------------------------------------lswsp  177 (568)
T PTZ00420        141 MCSSGFDSFVNIWDIENEKRAF----QINMPKKLSS---------------------------------------LKWNI  177 (568)
T ss_pred             EEEEeCCCeEEEEECCCCcEEE----EEecCCcEEE---------------------------------------EEECC
Confidence            5789999999999999875322    2221111111                                       56999


Q ss_pred             CCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCC----cEE
Q 021291          159 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG----SIL  234 (314)
Q Consensus       159 ~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg----~i~  234 (314)
                      +|..+ + +++.|+.|+|||+++++.+..+.        +|.......+..+..|+++   +. +|++++.|+    .|+
T Consensus       178 dG~lL-a-t~s~D~~IrIwD~Rsg~~i~tl~--------gH~g~~~s~~v~~~~fs~d---~~-~IlTtG~d~~~~R~Vk  243 (568)
T PTZ00420        178 KGNLL-S-GTCVGKHMHIIDPRKQEIASSFH--------IHDGGKNTKNIWIDGLGGD---DN-YILSTGFSKNNMREMK  243 (568)
T ss_pred             CCCEE-E-EEecCCEEEEEECCCCcEEEEEe--------cccCCceeEEEEeeeEcCC---CC-EEEEEEcCCCCccEEE
Confidence            98744 3 45568999999999999988887        7765433333322236676   44 677766664    799


Q ss_pred             EEEccCCCCceEeeecC--CcceEEEEEeCCCCeEEEecCCCcEEEEecCCCe
Q 021291          235 VWDIRNPGIPLTAMKVH--LEPVLCLSIDESCNGGISGGADQKIVLYNLDHST  285 (314)
Q Consensus       235 vwd~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~  285 (314)
                      |||+++...++..+..+  .+.+......+++.++++|+.|+.|++|++..+.
T Consensus       244 LWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~  296 (568)
T PTZ00420        244 LWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS  296 (568)
T ss_pred             EEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc
Confidence            99999767777665433  2333333335668899999999999999998774

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.98  E-value=2.3e-30  Score=218.94  Aligned_cols=216  Identities=25%  Similarity=0.376  Sum_probs=176.5

Q ss_pred             eEEecCC-CCceeEEEEccCCCEEEEecCCCeEEEEeCCCCe--EEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCe
Q 021291           11 VAVLRGH-RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (314)
Q Consensus        11 ~~~l~~h-~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (314)
                      ...+.+| ...|.++.|+++|+.|++++.|+.+++|+..+.+  ....+.+|.  ..|.+++|+|  ++.++++++.|++
T Consensus       151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~--~~v~~~~fs~--d~~~l~s~s~D~t  226 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHT--RGVSDVAFSP--DGSYLLSGSDDKT  226 (456)
T ss_pred             eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccc--cceeeeEECC--CCcEEEEecCCce
Confidence            5556555 7899999999999999999999999999997777  677777788  4499999999  9999999999999


Q ss_pred             EEEEeCCCC-CCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEE
Q 021291           88 VKCWDIENG-GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV  166 (314)
Q Consensus        88 v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (314)
                      |+|||+... .+.+    .+..+.....  +                                    ++|+|++ .+++ 
T Consensus       227 iriwd~~~~~~~~~----~l~gH~~~v~--~------------------------------------~~f~p~g-~~i~-  262 (456)
T KOG0266|consen  227 LRIWDLKDDGRNLK----TLKGHSTYVT--S------------------------------------VAFSPDG-NLLV-  262 (456)
T ss_pred             EEEeeccCCCeEEE----EecCCCCceE--E------------------------------------EEecCCC-CEEE-
Confidence            999999433 3322    3332221111  0                                    5689999 4554 


Q ss_pred             eecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCC--c
Q 021291          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI--P  244 (314)
Q Consensus       167 ~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~--~  244 (314)
                      +|+.|++|+|||++++++...+.        +|..    .+.++. |+++   +. +|++++.|+.|++||+.+ +.  +
T Consensus       263 Sgs~D~tvriWd~~~~~~~~~l~--------~hs~----~is~~~-f~~d---~~-~l~s~s~d~~i~vwd~~~-~~~~~  324 (456)
T KOG0266|consen  263 SGSDDGTVRIWDVRTGECVRKLK--------GHSD----GISGLA-FSPD---GN-LLVSASYDGTIRVWDLET-GSKLC  324 (456)
T ss_pred             EecCCCcEEEEeccCCeEEEeee--------ccCC----ceEEEE-ECCC---CC-EEEEcCCCccEEEEECCC-Cceee
Confidence            78889999999999999999999        7744    777777 9998   55 899999999999999998 66  5


Q ss_pred             eEeeecCCcc--eEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEeeee
Q 021291          245 LTAMKVHLEP--VLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFGIG  292 (314)
Q Consensus       245 ~~~~~~h~~~--v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~  292 (314)
                      +..+.++...  ++.+.|+|++.+|++++.|+.+++||+..++.+....+
T Consensus       325 ~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~  374 (456)
T KOG0266|consen  325 LKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTG  374 (456)
T ss_pred             eecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecc
Confidence            6777776655  99999999999999999999999999998877665433

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.98  E-value=9e-30  Score=210.94  Aligned_cols=232  Identities=22%  Similarity=0.298  Sum_probs=186.8

Q ss_pred             CceEEecCCCCceeEEEEccCCCEEEEecCC-CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCe
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTG-GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~d-g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (314)
                      .+++.|.--..+|..++|+..|..||.|+.. |++.||+......+...++|...  +.+++++|  ||+++++|+.||.
T Consensus       298 ~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~--i~~l~YSp--Dgq~iaTG~eDgK  373 (893)
T KOG0291|consen  298 NLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDR--ITSLAYSP--DGQLIATGAEDGK  373 (893)
T ss_pred             eEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccc--eeeEEECC--CCcEEEeccCCCc
Confidence            5677777777899999999999999988764 89999999988888888899854  99999999  9999999999999


Q ss_pred             EEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEe
Q 021291           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA  167 (314)
Q Consensus        88 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (314)
                      |+|||...+-|..    ++..+......                                      +.|+..|+.++  +
T Consensus       374 VKvWn~~SgfC~v----TFteHts~Vt~--------------------------------------v~f~~~g~~ll--s  409 (893)
T KOG0291|consen  374 VKVWNTQSGFCFV----TFTEHTSGVTA--------------------------------------VQFTARGNVLL--S  409 (893)
T ss_pred             EEEEeccCceEEE----EeccCCCceEE--------------------------------------EEEEecCCEEE--E
Confidence            9999999987744    44333222222                                      44667776444  6


Q ss_pred             ecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCC-cEEEEEccCCCCceE
Q 021291          168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG-SILVWDIRNPGIPLT  246 (314)
Q Consensus       168 g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg-~i~vwd~~~~~~~~~  246 (314)
                      .+.||+|+.||+...+..++|..+           ......+++ -.|.   |. ++++|+.|. .|.||++++ ++.+.
T Consensus       410 sSLDGtVRAwDlkRYrNfRTft~P-----------~p~Qfscva-vD~s---Ge-lV~AG~~d~F~IfvWS~qT-GqllD  472 (893)
T KOG0291|consen  410 SSLDGTVRAWDLKRYRNFRTFTSP-----------EPIQFSCVA-VDPS---GE-LVCAGAQDSFEIFVWSVQT-GQLLD  472 (893)
T ss_pred             eecCCeEEeeeecccceeeeecCC-----------CceeeeEEE-EcCC---CC-EEEeeccceEEEEEEEeec-Ceeee
Confidence            788999999999999988888732           222344444 6665   66 777787775 599999999 99999


Q ss_pred             eeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeE-------eeeeeeecCCCceecee
Q 021291          247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVL-------FGIGFVCDQEGNKFGTT  305 (314)
Q Consensus       247 ~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~-------~~~~~~~~~~~~~~~~~  305 (314)
                      .+.||.+||.+++|+|.+..|+|+|.|.+||+||+-......       ...++++.|+|+.++..
T Consensus       473 iLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVa  538 (893)
T KOG0291|consen  473 ILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVA  538 (893)
T ss_pred             hhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEE
Confidence            999999999999999999999999999999999986552211       25778899999887654

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.97  E-value=1.1e-29  Score=199.84  Aligned_cols=220  Identities=15%  Similarity=0.260  Sum_probs=175.4

Q ss_pred             CCCCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEE------------------------------
Q 021291            5 PPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVS------------------------------   54 (314)
Q Consensus         5 ~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~------------------------------   54 (314)
                      ..++..+.+|..|+++|.++.|+.+|+||++++.||++.+||..++...+                              
T Consensus       263 ~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~  342 (524)
T KOG0273|consen  263 NKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIH  342 (524)
T ss_pred             ecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEE
Confidence            35667888899999999999999999999999999999999987664332                              


Q ss_pred             -----------EEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccc
Q 021291           55 -----------SSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY  123 (314)
Q Consensus        55 -----------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (314)
                                 ++.+|.+  .|.+|.|+|  .+.+|+++|.|++++||......+..  -+..+........+++.+.  
T Consensus       343 V~kv~~~~P~~t~~GH~g--~V~alk~n~--tg~LLaS~SdD~TlkiWs~~~~~~~~--~l~~Hskei~t~~wsp~g~--  414 (524)
T KOG0273|consen  343 VCKVGEDRPVKTFIGHHG--EVNALKWNP--TGSLLASCSDDGTLKIWSMGQSNSVH--DLQAHSKEIYTIKWSPTGP--  414 (524)
T ss_pred             EEEecCCCcceeeecccC--ceEEEEECC--CCceEEEecCCCeeEeeecCCCcchh--hhhhhccceeeEeecCCCC--
Confidence                       3346774  499999999  89999999999999999988776544  2222222222232332221  


Q ss_pred             cccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCC
Q 021291          124 ANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKG  203 (314)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~  203 (314)
                                                    +.++|..+..++ +++.|++|++||+..+.++..|.        .|    
T Consensus       415 ------------------------------v~~n~~~~~~l~-sas~dstV~lwdv~~gv~i~~f~--------kH----  451 (524)
T KOG0273|consen  415 ------------------------------VTSNPNMNLMLA-SASFDSTVKLWDVESGVPIHTLM--------KH----  451 (524)
T ss_pred             ------------------------------ccCCCcCCceEE-EeecCCeEEEEEccCCceeEeec--------cC----
Confidence                                          224444444454 56669999999999999999997        56    


Q ss_pred             CceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecC
Q 021291          204 RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD  282 (314)
Q Consensus       204 ~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~  282 (314)
                      ..++++++ |+|+   |+ ++++|+.||.|.+|++++ ++.++.+.+ .+.|..|+|+.+|.+|..+-.|+.+++-|++
T Consensus       452 ~~pVysva-fS~~---g~-ylAsGs~dg~V~iws~~~-~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  452 QEPVYSVA-FSPN---GR-YLASGSLDGCVHIWSTKT-GKLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             CCceEEEE-ecCC---Cc-EEEecCCCCeeEeccccc-hheeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            55889998 9998   66 999999999999999998 888888876 5679999999999999999999999999875

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.97  E-value=2.6e-29  Score=191.82  Aligned_cols=248  Identities=14%  Similarity=0.199  Sum_probs=182.2

Q ss_pred             CCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCe
Q 021291            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (314)
Q Consensus         8 ~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (314)
                      ++....+.||++.|+|+.|+.||.+||||..+|.|+||+..++.....+....  +.|.-|.|+|  .+..|+.|+.||.
T Consensus        96 ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~--~dieWl~WHp--~a~illAG~~DGs  171 (399)
T KOG0296|consen   96 GEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEV--EDIEWLKWHP--RAHILLAGSTDGS  171 (399)
T ss_pred             CcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeeccc--CceEEEEecc--cccEEEeecCCCc
Confidence            35778899999999999999999999999999999999999998888886444  3499999999  8899999999999


Q ss_pred             EEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeee---------------------
Q 021291           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDT---------------------  146 (314)
Q Consensus        88 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------  146 (314)
                      |.+|.+.++...+  ++..+..+...-.+.+.+.. ....+..+....|+......+..                     
T Consensus       172 vWmw~ip~~~~~k--v~~Gh~~~ct~G~f~pdGKr-~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~  248 (399)
T KOG0296|consen  172 VWMWQIPSQALCK--VMSGHNSPCTCGEFIPDGKR-ILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTL  248 (399)
T ss_pred             EEEEECCCcceee--EecCCCCCcccccccCCCce-EEEEecCceEEEEecCCCceeEEecccccCcCCcccccccccee
Confidence            9999998854433  33333333333333333211 11222233333333332221111                     


Q ss_pred             ----------------------cC-------CCCCC----ceeccCC-CceEEEeecCcCeEEEEecCCCceeeeecccc
Q 021291          147 ----------------------DS-------LCDSK----DDVPAEG-PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNS  192 (314)
Q Consensus       147 ----------------------~~-------~~~~~----~~~~~~~-~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~  192 (314)
                                            ..       ..+..    +.+.|.. ..-++++|+.||+|.|||+...+....+.   
T Consensus       249 ~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~---  325 (399)
T KOG0296|consen  249 TKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE---  325 (399)
T ss_pred             EeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc---
Confidence                                  10       01111    2222221 23366689999999999999877665555   


Q ss_pred             cCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecC
Q 021291          193 CGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA  272 (314)
Q Consensus       193 ~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~  272 (314)
                            |    ...++.+. |-++ .    +|++++.||.|+.||.|+ ++++..+.+|...|.+++++|+.++++|+|.
T Consensus       326 ------h----e~~V~~l~-w~~t-~----~l~t~c~~g~v~~wDaRt-G~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~  388 (399)
T KOG0296|consen  326 ------H----EDGVTKLK-WLNT-D----YLLTACANGKVRQWDART-GQLKFTYTGHQMGILDFALSPQKRLVVTVSD  388 (399)
T ss_pred             ------C----CCceEEEE-EcCc-c----hheeeccCceEEeeeccc-cceEEEEecCchheeEEEEcCCCcEEEEecC
Confidence                  3    44688887 9883 2    899999999999999999 9999999999999999999999999999999


Q ss_pred             CCcEEEEecC
Q 021291          273 DQKIVLYNLD  282 (314)
Q Consensus       273 dg~i~iw~~~  282 (314)
                      |++.+||++.
T Consensus       389 D~~a~VF~v~  398 (399)
T KOG0296|consen  389 DNTALVFEVP  398 (399)
T ss_pred             CCeEEEEecC
Confidence            9999999875

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=4.6e-30  Score=216.20  Aligned_cols=238  Identities=15%  Similarity=0.232  Sum_probs=184.8

Q ss_pred             ceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEE
Q 021291           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (314)
Q Consensus        10 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~   89 (314)
                      ++..|.+|.++|..++|+|++.++++|+.|-.|+||+..+.+++.++.+|-  +.|..+.|++  .-.+++|+|+|.+|+
T Consensus        43 li~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHl--DYVRt~~FHh--eyPWIlSASDDQTIr  118 (1202)
T KOG0292|consen   43 LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHL--DYVRTVFFHH--EYPWILSASDDQTIR  118 (1202)
T ss_pred             HHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhcccc--ceeEEeeccC--CCceEEEccCCCeEE
Confidence            566788999999999999999999999999999999999999999999999  5599999999  889999999999999


Q ss_pred             EEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeec
Q 021291           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE  169 (314)
Q Consensus        90 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  169 (314)
                      ||+..+++++.  +++.+.+..-+                                        ..|+|..+  ++++++
T Consensus       119 IWNwqsr~~ia--vltGHnHYVMc----------------------------------------AqFhptED--lIVSaS  154 (1202)
T KOG0292|consen  119 IWNWQSRKCIA--VLTGHNHYVMC----------------------------------------AQFHPTED--LIVSAS  154 (1202)
T ss_pred             EEeccCCceEE--EEecCceEEEe----------------------------------------eccCCccc--eEEEec
Confidence            99999998866  44444333222                                        34777665  344899


Q ss_pred             CcCeEEEEecCCCceeeeecc--cc-------------------cCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEee
Q 021291          170 QLSEVEIWDLNTAERCTRLHQ--NS-------------------CGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY  228 (314)
Q Consensus       170 ~d~~i~vwd~~~~~~~~~~~~--~~-------------------~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~  228 (314)
                      .|.+|++||+...+....-+.  +.                   .-..-||    ...+..++ |+|.-+    +|++|+
T Consensus       155 LDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGH----DRGVNwaA-fhpTlp----liVSG~  225 (1202)
T KOG0292|consen  155 LDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGH----DRGVNWAA-FHPTLP----LIVSGA  225 (1202)
T ss_pred             ccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccc----ccccceEE-ecCCcc----eEEecC
Confidence            999999999864322111110  00                   0000144    22344454 999855    999999


Q ss_pred             cCCcEEEEEccCC-CCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEee-------eeeeecCCCc
Q 021291          229 EDGSILVWDIRNP-GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFG-------IGFVCDQEGN  300 (314)
Q Consensus       229 ~dg~i~vwd~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~-------~~~~~~~~~~  300 (314)
                      .|..|++|.+... .-.+.+..+|...|.++-|+|...+++|.|.|++|+|||++..+.+.++       .-++.+|...
T Consensus       226 DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lN  305 (1202)
T KOG0292|consen  226 DDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELN  305 (1202)
T ss_pred             CcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcc
Confidence            9999999998752 2245667899999999999998889999999999999999998887753       3356677776


Q ss_pred             eece
Q 021291          301 KFGT  304 (314)
Q Consensus       301 ~~~~  304 (314)
                      .|+.
T Consensus       306 LfAA  309 (1202)
T KOG0292|consen  306 LFAA  309 (1202)
T ss_pred             eeee
Confidence            6664

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=9.5e-30  Score=195.14  Aligned_cols=271  Identities=17%  Similarity=0.193  Sum_probs=195.7

Q ss_pred             CCCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccC-CCCeEEEeec
Q 021291            6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSI-GLNKVISQGR   84 (314)
Q Consensus         6 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~   84 (314)
                      +|++++..+. |.+.|.++...  ++.+++|++||.+++||. .|++...+.+|.++  |.+++|.-.+ ....|++++.
T Consensus        94 ~aP~pl~~~~-hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~--ik~v~~v~~n~~~~~fvsas~  167 (423)
T KOG0313|consen   94 TAPKPLQCFL-HDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGP--IKSVAWVIKNSSSCLFVSASM  167 (423)
T ss_pred             CCCCcccccc-chhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcc--eeeeEEEecCCccceEEEecC
Confidence            4457777775 99999999987  678999999999999995 58999999999955  9988886521 2235999999


Q ss_pred             CCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccc-cccccCCCCcceeecc------------------------
Q 021291           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY-ANAKQANEPKDCYERE------------------------  139 (314)
Q Consensus        85 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------------------------  139 (314)
                      |.++++|.++.++...+.......+......++...... ...........+|+..                        
T Consensus       168 Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~  247 (423)
T KOG0313|consen  168 DQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEG  247 (423)
T ss_pred             CceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcc
Confidence            999999999887654432323223333333333222221 1222223344444411                        


Q ss_pred             CCceeeecCCCCCC----ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecC
Q 021291          140 VGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLP  215 (314)
Q Consensus       140 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p  215 (314)
                      ..+.+...+.+|.+    +.|++.+   .+.+++.|.+|+.||+.++..+.++..             .-...++. ++|
T Consensus       248 ~~r~P~vtl~GHt~~Vs~V~w~d~~---v~yS~SwDHTIk~WDletg~~~~~~~~-------------~ksl~~i~-~~~  310 (423)
T KOG0313|consen  248 GTRTPLVTLEGHTEPVSSVVWSDAT---VIYSVSWDHTIKVWDLETGGLKSTLTT-------------NKSLNCIS-YSP  310 (423)
T ss_pred             cccCceEEecccccceeeEEEcCCC---ceEeecccceEEEEEeecccceeeeec-------------CcceeEee-ccc
Confidence            01234445667777    7787743   333889999999999999998887762             33677777 998


Q ss_pred             CCCCCceEEEEeecCCcEEEEEccCCC--CceEeeecCCcceEEEEEeCCCC-eEEEecCCCcEEEEecCCCe-eeEeee
Q 021291          216 SKSQGFVNVLAGYEDGSILVWDIRNPG--IPLTAMKVHLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHST-YVLFGI  291 (314)
Q Consensus       216 ~~~~g~~~l~~g~~dg~i~vwd~~~~~--~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~dg~i~iw~~~~~~-~~~~~~  291 (314)
                      ..   . +|++|+.|..|++||.+++.  .+.+++.+|...|.++.|+|... .|++||.|+++++||+++.+ .++.+.
T Consensus       311 ~~---~-Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~  386 (423)
T KOG0313|consen  311 LS---K-LLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIA  386 (423)
T ss_pred             cc---c-eeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeec
Confidence            63   3 89999999999999999743  34577889999999999998654 57999999999999999998 788776


Q ss_pred             eeeecCCCceeceeec
Q 021291          292 GFVCDQEGNKFGTTWH  307 (314)
Q Consensus       292 ~~~~~~~~~~~~~~w~  307 (314)
                      ++    +.+.|...|.
T Consensus       387 ~h----~DKvl~vdW~  398 (423)
T KOG0313|consen  387 GH----NDKVLSVDWN  398 (423)
T ss_pred             cC----CceEEEEecc
Confidence            64    4555555553

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.9e-29  Score=181.95  Aligned_cols=250  Identities=15%  Similarity=0.203  Sum_probs=196.5

Q ss_pred             CCCCCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEee
Q 021291            4 RPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG   83 (314)
Q Consensus         4 ~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (314)
                      .|..+.+++++.||..+|..++.+.|+..+++|+.|..|.+||+.+|+..+.+++|...  |..++|+.  +...+++|+
T Consensus        45 Np~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aq--VNtV~fNe--esSVv~Sgs  120 (307)
T KOG0316|consen   45 NPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQ--VNTVRFNE--ESSVVASGS  120 (307)
T ss_pred             cccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccce--eeEEEecC--cceEEEecc
Confidence            36777899999999999999999999999999999999999999999999999999955  99999999  889999999


Q ss_pred             cCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC--ceeccCCC
Q 021291           84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGP  161 (314)
Q Consensus        84 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  161 (314)
                      .|.++++||.++...  +|+..+.........+.+.. .........+..+.++++.+...... .+|.-  ++|+++++
T Consensus       121 fD~s~r~wDCRS~s~--ePiQildea~D~V~Si~v~~-heIvaGS~DGtvRtydiR~G~l~sDy-~g~pit~vs~s~d~n  196 (307)
T KOG0316|consen  121 FDSSVRLWDCRSRSF--EPIQILDEAKDGVSSIDVAE-HEIVAGSVDGTVRTYDIRKGTLSSDY-FGHPITSVSFSKDGN  196 (307)
T ss_pred             ccceeEEEEcccCCC--CccchhhhhcCceeEEEecc-cEEEeeccCCcEEEEEeecceeehhh-cCCcceeEEecCCCC
Confidence            999999999998765  33444444433333333332 23334555677788888877654433 33433  99999998


Q ss_pred             ceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCC
Q 021291          162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP  241 (314)
Q Consensus       162 ~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~  241 (314)
                      ..+  .++.|+++++.|-.+++.+..++        ||....  .-.... +...   .. .+++|++||.|++||+-. 
T Consensus       197 c~L--a~~l~stlrLlDk~tGklL~sYk--------Ghkn~e--ykldc~-l~qs---dt-hV~sgSEDG~Vy~wdLvd-  258 (307)
T KOG0316|consen  197 CSL--ASSLDSTLRLLDKETGKLLKSYK--------GHKNME--YKLDCC-LNQS---DT-HVFSGSEDGKVYFWDLVD-  258 (307)
T ss_pred             EEE--EeeccceeeecccchhHHHHHhc--------ccccce--eeeeee-eccc---ce-eEEeccCCceEEEEEecc-
Confidence            777  47779999999999999999999        885522  222222 5443   22 899999999999999998 


Q ss_pred             CCceEeeecCCcc-eEEEEEeCCCCeEEEecCCCcEEEEe
Q 021291          242 GIPLTAMKVHLEP-VLCLSIDESCNGGISGGADQKIVLYN  280 (314)
Q Consensus       242 ~~~~~~~~~h~~~-v~~~~~~~~~~~l~s~s~dg~i~iw~  280 (314)
                      ...+..+..+... |.+++++|.-..|+++.. +.+.+|.
T Consensus       259 ~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~~  297 (307)
T KOG0316|consen  259 ETQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFWY  297 (307)
T ss_pred             ceeeeeeccCCceeEEeeecccCccceeEecC-Cceecee
Confidence            7888888888877 899999998877887754 4466664

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=8.3e-29  Score=182.06  Aligned_cols=211  Identities=22%  Similarity=0.256  Sum_probs=165.6

Q ss_pred             CceEEecCCCCceeEEEEccC-CCEEEEecCCCeEEEEeCCCC---eEEEEE-eccCCcccEEEEEEcccCCCCeEEEee
Q 021291            9 DPVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQH---RTVSSS-WVHSAAHGIVSVATGPSIGLNKVISQG   83 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~---~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (314)
                      ..++.+++|++.|..++|+|- |..||||+.|+.|+||+...+   .+...+ .+|+  ..|.+++|+|  .|++|++||
T Consensus         5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hk--rsVRsvAwsp--~g~~La~aS   80 (312)
T KOG0645|consen    5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHK--RSVRSVAWSP--HGRYLASAS   80 (312)
T ss_pred             eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccch--heeeeeeecC--CCcEEEEee
Confidence            457889999999999999996 889999999999999998743   344334 3466  5599999999  999999999


Q ss_pred             cCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCce
Q 021291           84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY  163 (314)
Q Consensus        84 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (314)
                      .|.++.||.-..++......++.+......                                        ++|+++|.++
T Consensus        81 FD~t~~Iw~k~~~efecv~~lEGHEnEVK~----------------------------------------Vaws~sG~~L  120 (312)
T KOG0645|consen   81 FDATVVIWKKEDGEFECVATLEGHENEVKC----------------------------------------VAWSASGNYL  120 (312)
T ss_pred             ccceEEEeecCCCceeEEeeeeccccceeE----------------------------------------EEEcCCCCEE
Confidence            999999998876643221112222222111                                        6799999744


Q ss_pred             EEEeecCcCeEEEEecCCC---ceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccC
Q 021291          164 MAVAGEQLSEVEIWDLNTA---ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (314)
Q Consensus       164 ~~~~g~~d~~i~vwd~~~~---~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~  240 (314)
                       | +++.|+.|-||.+...   ++...+.        .|...++.    +. |+|.+.    +|++++.|.+|++|+-..
T Consensus       121 -A-TCSRDKSVWiWe~deddEfec~aVL~--------~HtqDVK~----V~-WHPt~d----lL~S~SYDnTIk~~~~~~  181 (312)
T KOG0645|consen  121 -A-TCSRDKSVWIWEIDEDDEFECIAVLQ--------EHTQDVKH----VI-WHPTED----LLFSCSYDNTIKVYRDED  181 (312)
T ss_pred             -E-EeeCCCeEEEEEecCCCcEEEEeeec--------cccccccE----EE-EcCCcc----eeEEeccCCeEEEEeecC
Confidence             3 7888999999998744   3555666        67665444    44 999633    999999999999998762


Q ss_pred             --CCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecC
Q 021291          241 --PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD  282 (314)
Q Consensus       241 --~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~  282 (314)
                        .-.+++++.+|...|++++|++.|..|++++.|++++||...
T Consensus       182 dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~  225 (312)
T KOG0645|consen  182 DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY  225 (312)
T ss_pred             CCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec
Confidence              246889999999999999999999999999999999999843

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=5.6e-31  Score=200.83  Aligned_cols=244  Identities=22%  Similarity=0.348  Sum_probs=192.4

Q ss_pred             CceEEecCCCCceeEEEEccCC-CEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCe
Q 021291            9 DPVAVLRGHRASVTDVCFHQTK-PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (314)
                      ..+..|.||.+.|.|++=+|.. ..+|+|+.||.|+|||+.+.+++.+++.|.+.  |..|++..    ..+++++.|.+
T Consensus        57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~--V~Gi~v~~----~~~~tvgdDKt  130 (433)
T KOG0268|consen   57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGL--VRGICVTQ----TSFFTVGDDKT  130 (433)
T ss_pred             cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCc--eeeEEecc----cceEEecCCcc
Confidence            4577889999999999999965 78999999999999999999999999999955  99999976    78999999999


Q ss_pred             EEEEeCCCCCCCCCCeeeeecceeeEEEeeeeecc-ccccccCCCCcceeeccCCceeeecCCCCCC---ceeccCCCce
Q 021291           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEP-YANAKQANEPKDCYEREVGETVDTDSLCDSK---DDVPAEGPKY  163 (314)
Q Consensus        88 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  163 (314)
                      |+.|-++..     +..++......   ..+.-.. .......|....+|+......+....-+...   +.|+|-...+
T Consensus       131 vK~wk~~~~-----p~~tilg~s~~---~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsI  202 (433)
T KOG0268|consen  131 VKQWKIDGP-----PLHTILGKSVY---LGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSI  202 (433)
T ss_pred             eeeeeccCC-----cceeeeccccc---cccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchh
Confidence            999998763     12222222111   1111111 2223344556778888766655554444443   8899999888


Q ss_pred             EEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCC
Q 021291          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI  243 (314)
Q Consensus       164 ~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~  243 (314)
                      |+++++ |+.|.+||+++..++..+..             ......++ |+|.   +. .+++|++|..++.||++....
T Consensus       203 Las~~s-DrsIvLyD~R~~~Pl~KVi~-------------~mRTN~Is-wnPe---af-nF~~a~ED~nlY~~DmR~l~~  263 (433)
T KOG0268|consen  203 LASCAS-DRSIVLYDLRQASPLKKVIL-------------TMRTNTIC-WNPE---AF-NFVAANEDHNLYTYDMRNLSR  263 (433)
T ss_pred             eeeecc-CCceEEEecccCCccceeee-------------ecccccee-cCcc---cc-ceeeccccccceehhhhhhcc
Confidence            876555 89999999999998877662             22344454 9994   33 799999999999999999899


Q ss_pred             ceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCe
Q 021291          244 PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST  285 (314)
Q Consensus       244 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~  285 (314)
                      ++....+|.+.|.+++|+|.|+-+++||.|.+|+||.++.+.
T Consensus       264 p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~  305 (433)
T KOG0268|consen  264 PLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGH  305 (433)
T ss_pred             cchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCc
Confidence            999999999999999999999999999999999999998774

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.97  E-value=5.8e-29  Score=180.86  Aligned_cols=226  Identities=15%  Similarity=0.257  Sum_probs=169.2

Q ss_pred             CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v   88 (314)
                      .|+.+|.+|++.|+++.|..+|+.++||+.||+++|||++...+.+.++ |.  ++|.++..+|  +...|++|..+|.|
T Consensus        74 ~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~--spVn~vvlhp--nQteLis~dqsg~i  148 (311)
T KOG0315|consen   74 NPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HN--SPVNTVVLHP--NQTELISGDQSGNI  148 (311)
T ss_pred             CceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CC--CCcceEEecC--CcceEEeecCCCcE
Confidence            5899999999999999999999999999999999999999866666654 44  5699999999  88999999999999


Q ss_pred             EEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCc-----eeeecCCCCCC----ceeccC
Q 021291           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE-----TVDTDSLCDSK----DDVPAE  159 (314)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~----~~~~~~  159 (314)
                      ++||+.+..+..+++-+. ........+.+++.. .......+.-.+|++-...     .+..++..|..    .-+||+
T Consensus       149 rvWDl~~~~c~~~liPe~-~~~i~sl~v~~dgsm-l~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd  226 (311)
T KOG0315|consen  149 RVWDLGENSCTHELIPED-DTSIQSLTVMPDGSM-LAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPD  226 (311)
T ss_pred             EEEEccCCccccccCCCC-CcceeeEEEcCCCcE-EEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCC
Confidence            999999886654322111 112222222222211 2223333444556553322     34455666766    789999


Q ss_pred             CCceEEEeecCcCeEEEEecCCC-ceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEc
Q 021291          160 GPKYMAVAGEQLSEVEIWDLNTA-ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI  238 (314)
Q Consensus       160 ~~~~~~~~g~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~  238 (314)
                      ++++.  +++.|.+++||+..+. +....+.        +|    ...++.++ |+.+   |+ ||++|+.|+.+++||+
T Consensus       227 ~k~la--t~ssdktv~iwn~~~~~kle~~l~--------gh----~rWvWdc~-FS~d---g~-YlvTassd~~~rlW~~  287 (311)
T KOG0315|consen  227 VKYLA--TCSSDKTVKIWNTDDFFKLELVLT--------GH----QRWVWDCA-FSAD---GE-YLVTASSDHTARLWDL  287 (311)
T ss_pred             CcEEE--eecCCceEEEEecCCceeeEEEee--------cC----CceEEeee-eccC---cc-EEEecCCCCceeeccc
Confidence            98654  4555899999999887 4444555        66    45888887 9988   66 9999999999999999


Q ss_pred             cCCCCceEeeecCCcceEEEEEe
Q 021291          239 RNPGIPLTAMKVHLEPVLCLSID  261 (314)
Q Consensus       239 ~~~~~~~~~~~~h~~~v~~~~~~  261 (314)
                      .. ++.+....+|..+..+++..
T Consensus       288 ~~-~k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  288 SA-GKEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             cc-CceeeecCCcccccEEEEee
Confidence            98 88899999999888887763

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=4.7e-29  Score=183.36  Aligned_cols=238  Identities=18%  Similarity=0.203  Sum_probs=179.8

Q ss_pred             CCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCC--eEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeC
Q 021291           16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH--RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI   93 (314)
Q Consensus        16 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~   93 (314)
                      +|+..|+.++|+|.|++||+|+.|.++.||.-..+  +++.++++|+.+  |.|++|++  +|++||+++.|+.|-||.+
T Consensus        59 ~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnE--VK~Vaws~--sG~~LATCSRDKSVWiWe~  134 (312)
T KOG0645|consen   59 GHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENE--VKCVAWSA--SGNYLATCSRDKSVWIWEI  134 (312)
T ss_pred             cchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccc--eeEEEEcC--CCCEEEEeeCCCeEEEEEe
Confidence            79999999999999999999999999999986543  789999999955  99999999  9999999999999999999


Q ss_pred             CCCCC-CCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeec-cCCceeeecCCCCCC----ceeccCCCceEEEe
Q 021291           94 ENGGL-SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYER-EVGETVDTDSLCDSK----DDVPAEGPKYMAVA  167 (314)
Q Consensus        94 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~  167 (314)
                      ..... ....+++.+......+.+.+.........++.......+. .........+.+|..    ++|++.|.++.  +
T Consensus       135 deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~--s  212 (312)
T KOG0645|consen  135 DEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLV--S  212 (312)
T ss_pred             cCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEE--E
Confidence            74431 1122455566666777777655444444444433333333 344566777888876    88999997665  7


Q ss_pred             ecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCC-CCc--
Q 021291          168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP-GIP--  244 (314)
Q Consensus       168 g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~-~~~--  244 (314)
                      ++.|++++||-..+.     +..       -    ....++.+. |. +   |  .|++++.|+.|++|.-... ..+  
T Consensus       213 ~sdD~tv~Iw~~~~~-----~~~-------~----~sr~~Y~v~-W~-~---~--~IaS~ggD~~i~lf~~s~~~d~p~~  269 (312)
T KOG0645|consen  213 CSDDGTVSIWRLYTD-----LSG-------M----HSRALYDVP-WD-N---G--VIASGGGDDAIRLFKESDSPDEPSW  269 (312)
T ss_pred             ecCCcceEeeeeccC-----cch-------h----cccceEeee-ec-c---c--ceEeccCCCEEEEEEecCCCCCchH
Confidence            888999999986621     221       1    244666666 87 3   3  7999999999999976531 122  


Q ss_pred             ---eEeeecCCcceEEEEEeCC-CCeEEEecCCCcEEEEecC
Q 021291          245 ---LTAMKVHLEPVLCLSIDES-CNGGISGGADQKIVLYNLD  282 (314)
Q Consensus       245 ---~~~~~~h~~~v~~~~~~~~-~~~l~s~s~dg~i~iw~~~  282 (314)
                         ...-..|...|+++.|+|. ..+|++|+.||.|++|.+.
T Consensus       270 ~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  270 NLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             HHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence               2234578999999999994 6689999999999999875

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.7e-30  Score=188.23  Aligned_cols=216  Identities=20%  Similarity=0.292  Sum_probs=175.8

Q ss_pred             CCCCCCceEEecCCCCceeEEEEcc-CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEe
Q 021291            4 RPPPPDPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ   82 (314)
Q Consensus         4 ~~~~~~~~~~l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~   82 (314)
                      .+.|..|++.++.|..+|.++.|++ +++.+++++.|++|++|+...++.+.++.+|.  ..|+...|+|. ..+.|+++
T Consensus        90 ~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~--~~Iy~a~~sp~-~~nlfas~  166 (311)
T KOG0277|consen   90 LTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHN--SCIYQAAFSPH-IPNLFASA  166 (311)
T ss_pred             cCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCc--cEEEEEecCCC-CCCeEEEc
Confidence            4567789999999999999999999 67788889999999999999999999999998  55999999997 66899999


Q ss_pred             ecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCc
Q 021291           83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPK  162 (314)
Q Consensus        83 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (314)
                      |.|+++++||++......  .+..+......                                        ..|+....+
T Consensus       167 Sgd~~l~lwdvr~~gk~~--~i~ah~~Eil~----------------------------------------cdw~ky~~~  204 (311)
T KOG0277|consen  167 SGDGTLRLWDVRSPGKFM--SIEAHNSEILC----------------------------------------CDWSKYNHN  204 (311)
T ss_pred             cCCceEEEEEecCCCcee--EEEeccceeEe----------------------------------------ecccccCCc
Confidence            999999999998753211  22222222222                                        347777677


Q ss_pred             eEEEeecCcCeEEEEecCCCc-eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCC
Q 021291          163 YMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP  241 (314)
Q Consensus       163 ~~~~~g~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~  241 (314)
                      +++ +|+.|+.|+.||+++.+ ++..+.        +|    .-.+..+. |+|...+   +|++++.|-+++|||...+
T Consensus       205 vl~-Tg~vd~~vr~wDir~~r~pl~eL~--------gh----~~AVRkvk-~Sph~~~---lLaSasYDmT~riw~~~~~  267 (311)
T KOG0277|consen  205 VLA-TGGVDNLVRGWDIRNLRTPLFELN--------GH----GLAVRKVK-FSPHHAS---LLASASYDMTVRIWDPERQ  267 (311)
T ss_pred             EEE-ecCCCceEEEEehhhccccceeec--------CC----ceEEEEEe-cCcchhh---HhhhccccceEEecccccc
Confidence            766 67779999999999765 445554        66    34677887 9998442   8999999999999999875


Q ss_pred             CCceEeeecCCcceEEEEEeC-CCCeEEEecCCCcEEEEec
Q 021291          242 GIPLTAMKVHLEPVLCLSIDE-SCNGGISGGADQKIVLYNL  281 (314)
Q Consensus       242 ~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~i~iw~~  281 (314)
                      ...+.+..-|++-|..+.|++ +..++|+++.|+.++||+.
T Consensus       268 ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  268 DSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             hhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            778888889999999999954 4558999999999999984

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.97  E-value=1.2e-29  Score=193.45  Aligned_cols=216  Identities=20%  Similarity=0.367  Sum_probs=178.5

Q ss_pred             CCCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC
Q 021291            6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD   85 (314)
Q Consensus         6 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (314)
                      ..+++..++.||...|..+++|+-..||++++.|+.|+.||++..+.++.+.+|-.  .|+|++..|  .-+.|++|+.|
T Consensus       181 atg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS--~V~~L~lhP--Tldvl~t~grD  256 (460)
T KOG0285|consen  181 ATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLS--GVYCLDLHP--TLDVLVTGGRD  256 (460)
T ss_pred             ccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccc--eeEEEeccc--cceeEEecCCc
Confidence            35677889999999999999999999999999999999999999999999989984  499999999  77899999999


Q ss_pred             CeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEE
Q 021291           86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA  165 (314)
Q Consensus        86 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (314)
                      .++++||+++...+.    .+..+......                                      +.+.|....++ 
T Consensus       257 st~RvWDiRtr~~V~----~l~GH~~~V~~--------------------------------------V~~~~~dpqvi-  293 (460)
T KOG0285|consen  257 STIRVWDIRTRASVH----VLSGHTNPVAS--------------------------------------VMCQPTDPQVI-  293 (460)
T ss_pred             ceEEEeeecccceEE----EecCCCCccee--------------------------------------EEeecCCCceE-
Confidence            999999999986533    33333222221                                      12334444444 


Q ss_pred             EeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCce
Q 021291          166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL  245 (314)
Q Consensus       166 ~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~  245 (314)
                       +|+.|++|++||++.++...++.        .|    +-.+.+++ .+|...    .+++++.| .|+-|++.. +..+
T Consensus       294 -t~S~D~tvrlWDl~agkt~~tlt--------~h----kksvral~-lhP~e~----~fASas~d-nik~w~~p~-g~f~  353 (460)
T KOG0285|consen  294 -TGSHDSTVRLWDLRAGKTMITLT--------HH----KKSVRALC-LHPKEN----LFASASPD-NIKQWKLPE-GEFL  353 (460)
T ss_pred             -EecCCceEEEeeeccCceeEeee--------cc----cceeeEEe-cCCchh----hhhccCCc-cceeccCCc-cchh
Confidence             79999999999999999888887        45    44677777 999743    78888776 689999998 8888


Q ss_pred             EeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291          246 TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF  289 (314)
Q Consensus       246 ~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~  289 (314)
                      +.+.+|...|++++...|+ ++++|++.|.+.+||.+++-.-++
T Consensus       354 ~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~  396 (460)
T KOG0285|consen  354 QNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQR  396 (460)
T ss_pred             hccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCccccc
Confidence            8899999999999998887 588999999999999998865443

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=1.7e-29  Score=189.32  Aligned_cols=220  Identities=17%  Similarity=0.249  Sum_probs=174.8

Q ss_pred             CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCC------------C------eEEEEEeccCCcccEEEEEE
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ------------H------RTVSSSWVHSAAHGIVSVAT   70 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~------------~------~~~~~~~~~~~~~~v~~~~~   70 (314)
                      -....+..|++++.+.+|++||.++|||+.|-.|+|.|++.            +      -.++++-.|..  .|.++.|
T Consensus       103 yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~d--evn~l~F  180 (430)
T KOG0640|consen  103 YETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVD--EVNDLDF  180 (430)
T ss_pred             cceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccC--cccceee
Confidence            45667788999999999999999999999999999999872            1      24566777774  4999999


Q ss_pred             cccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCC
Q 021291           71 GPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLC  150 (314)
Q Consensus        71 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (314)
                      +|  ....|++++.|++|+++|+......+  .  ++.........+                                 
T Consensus       181 HP--re~ILiS~srD~tvKlFDfsK~saKr--A--~K~~qd~~~vrs---------------------------------  221 (430)
T KOG0640|consen  181 HP--RETILISGSRDNTVKLFDFSKTSAKR--A--FKVFQDTEPVRS---------------------------------  221 (430)
T ss_pred             cc--hhheEEeccCCCeEEEEecccHHHHH--H--HHHhhccceeee---------------------------------
Confidence            99  77999999999999999997654322  1  111111000000                                 


Q ss_pred             CCCceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecC
Q 021291          151 DSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED  230 (314)
Q Consensus       151 ~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~d  230 (314)
                         ++|+|.|+++++  |..-.++++||+.+-++...-.+     ..+|    .+.+.++. |++.   |+ +.++|+.|
T Consensus       222 ---iSfHPsGefllv--gTdHp~~rlYdv~T~QcfvsanP-----d~qh----t~ai~~V~-Ys~t---~~-lYvTaSkD  282 (430)
T KOG0640|consen  222 ---ISFHPSGEFLLV--GTDHPTLRLYDVNTYQCFVSANP-----DDQH----TGAITQVR-YSST---GS-LYVTASKD  282 (430)
T ss_pred             ---EeecCCCceEEE--ecCCCceeEEeccceeEeeecCc-----cccc----ccceeEEE-ecCC---cc-EEEEeccC
Confidence               569999997774  66678999999999888665542     1244    66889998 9998   55 89999999


Q ss_pred             CcEEEEEccCCCCceEeee-cCCc-ceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291          231 GSILVWDIRNPGIPLTAMK-VHLE-PVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF  289 (314)
Q Consensus       231 g~i~vwd~~~~~~~~~~~~-~h~~-~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~  289 (314)
                      |.|++||--+ ++++.++. +|.+ .|.+..|..+++|+.+.+.|..+++|++.+++.+..
T Consensus       283 G~IklwDGVS-~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~  342 (430)
T KOG0640|consen  283 GAIKLWDGVS-NRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKE  342 (430)
T ss_pred             CcEEeecccc-HHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEE
Confidence            9999999877 78887775 6654 799999999999999999999999999999998875

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=7.1e-28  Score=218.09  Aligned_cols=246  Identities=13%  Similarity=0.207  Sum_probs=179.0

Q ss_pred             ecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCC----e----EEEEEeccCCcccEEEEEEcccCCCCeEEEeecC
Q 021291           14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH----R----TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD   85 (314)
Q Consensus        14 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~----~----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (314)
                      +.+|.+.|.+++|+|+|++||+|+.|+.|+|||....    .    ....+.. .  ..|.+++|++. ++.+|++++.|
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~--~~v~~l~~~~~-~~~~las~~~D  554 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-R--SKLSGICWNSY-IKSQVASSNFE  554 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc-c--CceeeEEeccC-CCCEEEEEeCC
Confidence            4458999999999999999999999999999997531    1    1222332 2  45899999873 46789999999


Q ss_pred             CeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC---ceeccCCCc
Q 021291           86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK---DDVPAEGPK  162 (314)
Q Consensus        86 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  162 (314)
                      |+|++||+.+++...  .+..+........+++............+...+|++......... ..+..   +.|.+....
T Consensus       555 g~v~lWd~~~~~~~~--~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~-~~~~~v~~v~~~~~~g~  631 (793)
T PLN00181        555 GVVQVWDVARSQLVT--EMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI-KTKANICCVQFPSESGR  631 (793)
T ss_pred             CeEEEEECCCCeEEE--EecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE-ecCCCeEEEEEeCCCCC
Confidence            999999999876533  223333344444444332333444555677888988776544332 22323   667554334


Q ss_pred             eEEEeecCcCeEEEEecCCCc-eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCC
Q 021291          163 YMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP  241 (314)
Q Consensus       163 ~~~~~g~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~  241 (314)
                      .++ +|+.|+.|++||+++.. ....+.        +|    ...+.++. |.+    +. +|++++.|+.|++||++..
T Consensus       632 ~la-tgs~dg~I~iwD~~~~~~~~~~~~--------~h----~~~V~~v~-f~~----~~-~lvs~s~D~~ikiWd~~~~  692 (793)
T PLN00181        632 SLA-FGSADHKVYYYDLRNPKLPLCTMI--------GH----SKTVSYVR-FVD----SS-TLVSSSTDNTLKLWDLSMS  692 (793)
T ss_pred             EEE-EEeCCCeEEEEECCCCCccceEec--------CC----CCCEEEEE-EeC----CC-EEEEEECCCEEEEEeCCCC
Confidence            444 67779999999998765 344555        56    34677777 863    33 8999999999999999742


Q ss_pred             -----CCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCe
Q 021291          242 -----GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST  285 (314)
Q Consensus       242 -----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~  285 (314)
                           ..++..+.+|...+..++|++++.+|++|+.|+.|++|+...+.
T Consensus       693 ~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~  741 (793)
T PLN00181        693 ISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPM  741 (793)
T ss_pred             ccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCC
Confidence                 35788899999999999999999999999999999999987654

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=3.9e-30  Score=187.13  Aligned_cols=250  Identities=16%  Similarity=0.221  Sum_probs=198.2

Q ss_pred             CCCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC
Q 021291            6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD   85 (314)
Q Consensus         6 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (314)
                      ..+.-+.+|.||.+.|+....+.+....|+++.|=+-+|||.-+|..+..++ |.+-  |..++|+.  |.++|++|+.+
T Consensus        47 ~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhi--vk~~af~~--ds~~lltgg~e  121 (334)
T KOG0278|consen   47 DTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHI--VKAVAFSQ--DSNYLLTGGQE  121 (334)
T ss_pred             CCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhhe--eeeEEecc--cchhhhccchH
Confidence            4556789999999999999999988889999999999999999999998885 6655  99999999  99999999999


Q ss_pred             CeEEEEeCCCCCCCCCCeeeeecc--eeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC--ceeccCCC
Q 021291           86 GTVKCWDIENGGLSSNPSLTIKTN--SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGP  161 (314)
Q Consensus        86 g~v~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  161 (314)
                      ..++|||++..+..   ..++..+  .+....+..... ..........++.|+.+.+.........+.-  +.++++|+
T Consensus       122 kllrvfdln~p~Ap---p~E~~ghtg~Ir~v~wc~eD~-~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~  197 (334)
T KOG0278|consen  122 KLLRVFDLNRPKAP---PKEISGHTGGIRTVLWCHEDK-CILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGR  197 (334)
T ss_pred             HHhhhhhccCCCCC---chhhcCCCCcceeEEEeccCc-eEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCC
Confidence            99999999877542   2233333  222222222222 2222367788899999998876665444433  89999998


Q ss_pred             ceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCC
Q 021291          162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP  241 (314)
Q Consensus       162 ~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~  241 (314)
                      .+.++   ..+.|.+||..+...+..++.+             ..+.+.. .+|+   .. .+++|++|..++.||..+ 
T Consensus       198 ilTia---~gssV~Fwdaksf~~lKs~k~P-------------~nV~SAS-L~P~---k~-~fVaGged~~~~kfDy~T-  255 (334)
T KOG0278|consen  198 ILTIA---YGSSVKFWDAKSFGLLKSYKMP-------------CNVESAS-LHPK---KE-FFVAGGEDFKVYKFDYNT-  255 (334)
T ss_pred             EEEEe---cCceeEEeccccccceeeccCc-------------ccccccc-ccCC---Cc-eEEecCcceEEEEEeccC-
Confidence            65432   2478999999999998888743             2344444 8887   33 899999999999999999 


Q ss_pred             CCceEee-ecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCee
Q 021291          242 GIPLTAM-KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTY  286 (314)
Q Consensus       242 ~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~  286 (314)
                      +..+..+ ++|-++|.++.|+|+|...++||.||+|++|.+..++.
T Consensus       256 geEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  256 GEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             CceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence            7777775 89999999999999999999999999999999886654

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=5.1e-29  Score=205.92  Aligned_cols=270  Identities=17%  Similarity=0.166  Sum_probs=211.8

Q ss_pred             CceEEecCCCCceeEEEEc-cCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCe
Q 021291            9 DPVAVLRGHRASVTDVCFH-QTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~-~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (314)
                      ++++.+-|-.+.|..|+|- |+.++||.++..+.+|+|+..+..+. .+.+|...  |.++....  +|.+|+||+.|.+
T Consensus       314 ~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~--vlSL~~~~--~g~llat~sKD~s  388 (775)
T KOG0319|consen  314 TIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEA--VLSLDVWS--SGDLLATGSKDKS  388 (775)
T ss_pred             EEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhh--eeeeeecc--cCcEEEEecCCce
Confidence            4566677889999999986 47789999999999999998887776 78899854  99999555  6689999999999


Q ss_pred             EEEEeCCCCCCCCCC--eeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCc----ee----eecCCCCCC----
Q 021291           88 VKCWDIENGGLSSNP--SLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE----TV----DTDSLCDSK----  153 (314)
Q Consensus        88 v~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~----~~~~~~~~~----  153 (314)
                      +++|.++++.....+  ....+.+......++..+.+............+|.+...+    .+    ......|..    
T Consensus       389 vilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~  468 (775)
T KOG0319|consen  389 VILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINC  468 (775)
T ss_pred             EEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccc
Confidence            999998554332211  2233444444444544445555566667778888876521    11    112344555    


Q ss_pred             ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcE
Q 021291          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI  233 (314)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i  233 (314)
                      ++++|+..  ++++|+.|++.+||++...+...++.        ||    +..++++. |+|.   .+ .+++++.|++|
T Consensus       469 Vaia~ndk--LiAT~SqDktaKiW~le~~~l~~vLs--------GH----~RGvw~V~-Fs~~---dq-~laT~SgD~Tv  529 (775)
T KOG0319|consen  469 VAIAPNDK--LIATGSQDKTAKIWDLEQLRLLGVLS--------GH----TRGVWCVS-FSKN---DQ-LLATCSGDKTV  529 (775)
T ss_pred             eEecCCCc--eEEecccccceeeecccCceEEEEee--------CC----ccceEEEE-eccc---cc-eeEeccCCceE
Confidence            88889875  44589999999999999999999998        88    55789998 9998   44 89999999999


Q ss_pred             EEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe-------eeeeeecCCCceec
Q 021291          234 LVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF-------GIGFVCDQEGNKFG  303 (314)
Q Consensus       234 ~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~-------~~~~~~~~~~~~~~  303 (314)
                      +||.+.+ ..+++++.||...|..+.|-.++..|+|++.||.|++|++.+++++..       ..++++.+....|.
T Consensus       530 KIW~is~-fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~  605 (775)
T KOG0319|consen  530 KIWSIST-FSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFV  605 (775)
T ss_pred             EEEEecc-ceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeE
Confidence            9999999 999999999999999999999999999999999999999999988764       56667777666544

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=5.5e-29  Score=208.79  Aligned_cols=255  Identities=15%  Similarity=0.196  Sum_probs=194.1

Q ss_pred             eEEec-CCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCC---------------------------------------
Q 021291           11 VAVLR-GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH---------------------------------------   50 (314)
Q Consensus        11 ~~~l~-~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~---------------------------------------   50 (314)
                      .+.+. +|.+.|+++.|++||+|||+||.||.|+||.+...                                       
T Consensus       259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~  338 (712)
T KOG0283|consen  259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS  338 (712)
T ss_pred             eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence            34455 89999999999999999999999999999987550                                       


Q ss_pred             ---------------------eEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecc
Q 021291           51 ---------------------RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTN  109 (314)
Q Consensus        51 ---------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~  109 (314)
                                           ++++.+.+|...  |..|.|+.  + ++|++++.|.+|++|++...+|++  + -.+..
T Consensus       339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~D--ILDlSWSK--n-~fLLSSSMDKTVRLWh~~~~~CL~--~-F~Hnd  410 (712)
T KOG0283|consen  339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTAD--ILDLSWSK--N-NFLLSSSMDKTVRLWHPGRKECLK--V-FSHND  410 (712)
T ss_pred             cccccCCccccCCCccccccccchhhhhccchh--heeccccc--C-CeeEeccccccEEeecCCCcceee--E-EecCC
Confidence                                 012334588855  99999998  5 999999999999999999988865  2 22344


Q ss_pred             eeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCC-CCC-ceeccCCCceEEEeecCcCeEEEEecCCCceeee
Q 021291          110 SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLC-DSK-DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTR  187 (314)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~  187 (314)
                      .+.+..|.+............+..++|.+...+.....-.. --. ++|.|+|+..+  .|+.+|.+++|++...+....
T Consensus       411 fVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~av--IGt~~G~C~fY~t~~lk~~~~  488 (712)
T KOG0283|consen  411 FVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAV--IGTFNGYCRFYDTEGLKLVSD  488 (712)
T ss_pred             eeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEE--EEEeccEEEEEEccCCeEEEe
Confidence            56667788877777777788888999999777655432211 111 89999998665  588899999999998876655


Q ss_pred             ecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcc--eEEEEEeCCCC
Q 021291          188 LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP--VLCLSIDESCN  265 (314)
Q Consensus       188 ~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~--v~~~~~~~~~~  265 (314)
                      +......   +. ......|+.++ |.|-.++   .+++.+.|..|+|+|.+. ..++..++|+...  =....|+.||+
T Consensus       489 ~~I~~~~---~K-k~~~~rITG~Q-~~p~~~~---~vLVTSnDSrIRI~d~~~-~~lv~KfKG~~n~~SQ~~Asfs~Dgk  559 (712)
T KOG0283|consen  489 FHIRLHN---KK-KKQGKRITGLQ-FFPGDPD---EVLVTSNDSRIRIYDGRD-KDLVHKFKGFRNTSSQISASFSSDGK  559 (712)
T ss_pred             eeEeecc---Cc-cccCceeeeeE-ecCCCCC---eEEEecCCCceEEEeccc-hhhhhhhcccccCCcceeeeEccCCC
Confidence            5421100   11 11122699998 9887654   577778899999999987 7888888876542  34567888999


Q ss_pred             eEEEecCCCcEEEEecCCC
Q 021291          266 GGISGGADQKIVLYNLDHS  284 (314)
Q Consensus       266 ~l~s~s~dg~i~iw~~~~~  284 (314)
                      +|++++.|..|++|+++..
T Consensus       560 ~IVs~seDs~VYiW~~~~~  578 (712)
T KOG0283|consen  560 HIVSASEDSWVYIWKNDSF  578 (712)
T ss_pred             EEEEeecCceEEEEeCCCC
Confidence            9999999999999998544

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=1.9e-28  Score=188.02  Aligned_cols=254  Identities=17%  Similarity=0.309  Sum_probs=188.3

Q ss_pred             CCCCceEEecCCCCceeEEEEccCCC---EEEEecCCCeEEEEeCCCCeE----EEEEeccCCcccEEEEEEcccCCCCe
Q 021291            6 PPPDPVAVLRGHRASVTDVCFHQTKP---ILFAGTTGGELRIWDTVQHRT----VSSSWVHSAAHGIVSVATGPSIGLNK   78 (314)
Q Consensus         6 ~~~~~~~~l~~h~~~v~~~~~~~~~~---~l~s~~~dg~v~iwd~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~   78 (314)
                      ..++..+++.||.++|.+++|.-...   .|++++.|.++++|.++.++.    +..-++|.  ..|.+++..+  ++..
T Consensus       132 ~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk--~~V~sVsv~~--sgtr  207 (423)
T KOG0313|consen  132 LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHK--RSVDSVSVDS--SGTR  207 (423)
T ss_pred             cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccc--cceeEEEecC--CCCe
Confidence            45788999999999999988865333   599999999999999987653    33345888  4599999999  9999


Q ss_pred             EEEeecCCeEEEEeCCCCC---------------------CCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceee
Q 021291           79 VISQGRDGTVKCWDIENGG---------------------LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYE  137 (314)
Q Consensus        79 l~s~~~dg~v~iwd~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (314)
                      +++|+.|.+|+||+..+..                     ..+.|+..+..+...................-......|+
T Consensus       208 ~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WD  287 (423)
T KOG0313|consen  208 FCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWD  287 (423)
T ss_pred             EEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEE
Confidence            9999999999999932211                     1113444444443332222222233334444556778888


Q ss_pred             ccCCceeeecCCCCCC--ceeccCCCceEEEeecCcCeEEEEecCCCce---eeeecccccCCCCCcCCCCCceeeeEEE
Q 021291          138 REVGETVDTDSLCDSK--DDVPAEGPKYMAVAGEQLSEVEIWDLNTAER---CTRLHQNSCGGSPNFSSKGRGMCMAVQA  212 (314)
Q Consensus       138 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~---~~~~~~~~~~~~~~h~~~~~~~~~~~~~  212 (314)
                      +..+...........-  ++++|... ++ ++|+.|..+++||++++.-   ..++.        +|    ...+.++. 
T Consensus       288 letg~~~~~~~~~ksl~~i~~~~~~~-Ll-~~gssdr~irl~DPR~~~gs~v~~s~~--------gH----~nwVssvk-  352 (423)
T KOG0313|consen  288 LETGGLKSTLTTNKSLNCISYSPLSK-LL-ASGSSDRHIRLWDPRTGDGSVVSQSLI--------GH----KNWVSSVK-  352 (423)
T ss_pred             eecccceeeeecCcceeEeecccccc-ee-eecCCCCceeecCCCCCCCceeEEeee--------cc----hhhhhhee-
Confidence            8887766555444444  66777553 34 4788899999999997752   34455        77    44778887 


Q ss_pred             ecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecC
Q 021291          213 YLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD  282 (314)
Q Consensus       213 ~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~  282 (314)
                      |+|.   ..+.|++|+.|+++++||+|+...++..+.+|.+.|.++.|...+ +|++||.|++|+|+.-.
T Consensus       353 wsp~---~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~-~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  353 WSPT---NEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGG-LIVSGGADNKLRIFKGS  418 (423)
T ss_pred             cCCC---CceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCc-eEEeccCcceEEEeccc
Confidence            9998   445899999999999999999667999999999999999997544 69999999999998654

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.6e-29  Score=184.22  Aligned_cols=208  Identities=17%  Similarity=0.273  Sum_probs=165.7

Q ss_pred             CCCceeEEEEcc-CCCEEEEecCCCeEEEEeCCC-CeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCC
Q 021291           17 HRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQ-HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE   94 (314)
Q Consensus        17 h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~   94 (314)
                      -.+.+..++|++ ..+.+++++.||+++|||+.. ..++..++.|..+  |.++.|++. ....++++|.|++|++|+..
T Consensus        59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~E--V~Svdwn~~-~r~~~ltsSWD~TiKLW~~~  135 (311)
T KOG0277|consen   59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKRE--VYSVDWNTV-RRRIFLTSSWDGTIKLWDPN  135 (311)
T ss_pred             cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhh--eEEeccccc-cceeEEeeccCCceEeecCC
Confidence            467889999999 457889999999999999653 4678888999855  999999986 45778888999999999998


Q ss_pred             CCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeE
Q 021291           95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEV  174 (314)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i  174 (314)
                      .+..+.    ++..+  ..+.+.                                    ..|+|.-.++++ +.+.|+++
T Consensus       136 r~~Sv~----Tf~gh--~~~Iy~------------------------------------a~~sp~~~nlfa-s~Sgd~~l  172 (311)
T KOG0277|consen  136 RPNSVQ----TFNGH--NSCIYQ------------------------------------AAFSPHIPNLFA-SASGDGTL  172 (311)
T ss_pred             CCcceE----eecCC--ccEEEE------------------------------------EecCCCCCCeEE-EccCCceE
Confidence            765433    33332  223222                                    458888888887 45569999


Q ss_pred             EEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcc
Q 021291          175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP  254 (314)
Q Consensus       175 ~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~  254 (314)
                      ++||++.......++        .|.    ..+.++. |+.-   +..++++|+.|+.|+.||+++...++.++.+|.-.
T Consensus       173 ~lwdvr~~gk~~~i~--------ah~----~Eil~cd-w~ky---~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~A  236 (311)
T KOG0277|consen  173 RLWDVRSPGKFMSIE--------AHN----SEILCCD-WSKY---NHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLA  236 (311)
T ss_pred             EEEEecCCCceeEEE--------ecc----ceeEeec-cccc---CCcEEEecCCCceEEEEehhhccccceeecCCceE
Confidence            999999765555566        663    3566766 7764   23399999999999999999989999999999999


Q ss_pred             eEEEEEeCCC-CeEEEecCCCcEEEEecCCCee
Q 021291          255 VLCLSIDESC-NGGISGGADQKIVLYNLDHSTY  286 (314)
Q Consensus       255 v~~~~~~~~~-~~l~s~s~dg~i~iw~~~~~~~  286 (314)
                      |..++|+|.. ..|+|++.|-+++|||...+..
T Consensus       237 VRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds  269 (311)
T KOG0277|consen  237 VRKVKFSPHHASLLASASYDMTVRIWDPERQDS  269 (311)
T ss_pred             EEEEecCcchhhHhhhccccceEEecccccchh
Confidence            9999998864 4689999999999999986643

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.97  E-value=3.4e-27  Score=188.36  Aligned_cols=270  Identities=20%  Similarity=0.297  Sum_probs=197.2

Q ss_pred             CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEE--EEEeccCCcccEEEEEEcccCCCCeEEEeecC-
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV--SSSWVHSAAHGIVSVATGPSIGLNKVISQGRD-   85 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-   85 (314)
                      ..+..+.+|...++-..|+|.|.|+|+|...|.|||||....+.+  ..++.-.  ++|..|+|++  +++++++.++. 
T Consensus        50 ~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~a--G~I~Di~Wd~--ds~RI~avGEGr  125 (603)
T KOG0318|consen   50 ASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLA--GPIKDISWDF--DSKRIAAVGEGR  125 (603)
T ss_pred             cceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecc--cccccceeCC--CCcEEEEEecCc
Confidence            446778899999999999999999999999999999998764443  3444444  5599999999  99999987753 


Q ss_pred             ---CeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCc--eeeecCCCCCC----cee
Q 021291           86 ---GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE--TVDTDSLCDSK----DDV  156 (314)
Q Consensus        86 ---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~----~~~  156 (314)
                         |.+.+||.-+.  ..  .+..+......+.+.+.....   ...++......+-.+.  ........|..    +.|
T Consensus       126 erfg~~F~~DSG~S--vG--ei~GhSr~ins~~~KpsRPfR---i~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRy  198 (603)
T KOG0318|consen  126 ERFGHVFLWDSGNS--VG--EITGHSRRINSVDFKPSRPFR---IATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRY  198 (603)
T ss_pred             cceeEEEEecCCCc--cc--eeeccceeEeeeeccCCCceE---EEeccCCCeEEEeeCCCeeeeecccccccceeeEEE
Confidence               45677776442  22  334444445555444433222   2333333344433332  23334555666    889


Q ss_pred             ccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEE
Q 021291          157 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW  236 (314)
Q Consensus       157 ~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vw  236 (314)
                      +|||+.+ +++|+ ||++.+||=.+++.+..+..         ...+.+.++++. |+||..    .+++++.|.+++||
T Consensus       199 sPDG~~F-at~gs-Dgki~iyDGktge~vg~l~~---------~~aHkGsIfals-WsPDs~----~~~T~SaDkt~KIW  262 (603)
T KOG0318|consen  199 SPDGSRF-ATAGS-DGKIYIYDGKTGEKVGELED---------SDAHKGSIFALS-WSPDST----QFLTVSADKTIKIW  262 (603)
T ss_pred             CCCCCeE-EEecC-CccEEEEcCCCccEEEEecC---------CCCccccEEEEE-ECCCCc----eEEEecCCceEEEE
Confidence            9999754 44454 89999999999999988872         333588999998 999944    89999999999999


Q ss_pred             EccCCCC-------------------------------------------ceEeeecCCcceEEEEEeCCCCeEEEecCC
Q 021291          237 DIRNPGI-------------------------------------------PLTAMKVHLEPVLCLSIDESCNGGISGGAD  273 (314)
Q Consensus       237 d~~~~~~-------------------------------------------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d  273 (314)
                      |+.+ .+                                           ++..+.+|...|+++..++++.+|++|+.|
T Consensus       263 dVs~-~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyD  341 (603)
T KOG0318|consen  263 DVST-NSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYD  341 (603)
T ss_pred             Eeec-cceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccC
Confidence            9865 22                                           344567899999999999999999999999


Q ss_pred             CcEEEEecCCCeee--------EeeeeeeecCCCceeceee
Q 021291          274 QKIVLYNLDHSTYV--------LFGIGFVCDQEGNKFGTTW  306 (314)
Q Consensus       274 g~i~iw~~~~~~~~--------~~~~~~~~~~~~~~~~~~w  306 (314)
                      |.|.-|+..++..-        .++.++..+..+.++-..|
T Consensus       342 G~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~  382 (603)
T KOG0318|consen  342 GHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGW  382 (603)
T ss_pred             ceEEEEecCCccccccccccccceEEEEeecCCCcEEEEec
Confidence            99999999887643        2466677777677666655

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3e-28  Score=182.77  Aligned_cols=247  Identities=17%  Similarity=0.290  Sum_probs=189.4

Q ss_pred             CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v   88 (314)
                      .++..+..|.++|++++.  ++.++|+|+.|-+|+|||..+...+..+..|.+  .|+++.|.+......|++|+.||.|
T Consensus        34 ~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~Hag--sitaL~F~~~~S~shLlS~sdDG~i  109 (362)
T KOG0294|consen   34 KPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAG--SITALKFYPPLSKSHLLSGSDDGHI  109 (362)
T ss_pred             eccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceecccc--ceEEEEecCCcchhheeeecCCCcE
Confidence            457888999999999999  489999999999999999999999999988984  4999999983222389999999999


Q ss_pred             EEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC--ceeccCCCceEEE
Q 021291           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMAV  166 (314)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  166 (314)
                      .+|+.....++.  .+..+........+.+.+. .+...........|++-.++........+..  +.|+|.|+++++ 
T Consensus       110 ~iw~~~~W~~~~--slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v-  185 (362)
T KOG0294|consen  110 IIWRVGSWELLK--SLKAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVV-  185 (362)
T ss_pred             EEEEcCCeEEee--eecccccccceeEecCCCc-eEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEE-
Confidence            999999887655  2333333333333333322 2334455566778888777655544444444  999999998765 


Q ss_pred             eecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceE
Q 021291          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (314)
Q Consensus       167 ~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~  246 (314)
                      .+.  ..|-+|.+.+......+..             ...+.++. |.-    +. .+++|..|+.|.+||.+. ..++.
T Consensus       186 ~~~--~~i~i~q~d~A~v~~~i~~-------------~~r~l~~~-~l~----~~-~L~vG~d~~~i~~~D~ds-~~~~~  243 (362)
T KOG0294|consen  186 SGR--NKIDIYQLDNASVFREIEN-------------PKRILCAT-FLD----GS-ELLVGGDNEWISLKDTDS-DTPLT  243 (362)
T ss_pred             Eec--cEEEEEecccHhHhhhhhc-------------cccceeee-ecC----Cc-eEEEecCCceEEEeccCC-Cccce
Confidence            343  6799999987776555541             12344443 442    33 899999999999999998 89999


Q ss_pred             eeecCCcceEEEEE--eCCCCeEEEecCCCcEEEEecCCCe
Q 021291          247 AMKVHLEPVLCLSI--DESCNGGISGGADQKIVLYNLDHST  285 (314)
Q Consensus       247 ~~~~h~~~v~~~~~--~~~~~~l~s~s~dg~i~iw~~~~~~  285 (314)
                      .+.+|...|.++.+  .|++.+|+|+|.||.|+|||++...
T Consensus       244 ~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~  284 (362)
T KOG0294|consen  244 EFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMET  284 (362)
T ss_pred             eeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccc
Confidence            99999999999996  7889999999999999999998773

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.9e-27  Score=178.73  Aligned_cols=248  Identities=17%  Similarity=0.284  Sum_probs=186.1

Q ss_pred             CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEE----------------------------------
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVS----------------------------------   54 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~----------------------------------   54 (314)
                      ++.+.|+.-...|+++.|+++|.+|++++.|-+++|||..+++++.                                  
T Consensus         5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry   84 (311)
T KOG1446|consen    5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY   84 (311)
T ss_pred             ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEE
Confidence            4566777778999999999999999999999999999988776533                                  


Q ss_pred             ----------EEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeecccc
Q 021291           55 ----------SSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA  124 (314)
Q Consensus        55 ----------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (314)
                                .+.+|.  ..|.+|+.+|  -++.|++++.|++|++||++..++..    -+.......+++.+.+-..+
T Consensus        85 Lsl~dNkylRYF~GH~--~~V~sL~~sP--~~d~FlS~S~D~tvrLWDlR~~~cqg----~l~~~~~pi~AfDp~GLifA  156 (311)
T KOG1446|consen   85 LSLHDNKYLRYFPGHK--KRVNSLSVSP--KDDTFLSSSLDKTVRLWDLRVKKCQG----LLNLSGRPIAAFDPEGLIFA  156 (311)
T ss_pred             EEeecCceEEEcCCCC--ceEEEEEecC--CCCeEEecccCCeEEeeEecCCCCce----EEecCCCcceeECCCCcEEE
Confidence                      334787  4599999999  77999999999999999999887754    33444445555655543333


Q ss_pred             ccccCCCCcceeeccCC-ceeee--cCC--CCCC---ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCC
Q 021291          125 NAKQANEPKDCYEREVG-ETVDT--DSL--CDSK---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGS  196 (314)
Q Consensus       125 ~~~~~~~~~~~~~~~~~-~~~~~--~~~--~~~~---~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~  196 (314)
                      ...... ...+++++.- +.+..  .+.  .+..   +.|+|+|+.+++.+.  .+.+++.|.-+|..+.++.       
T Consensus       157 ~~~~~~-~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~--~s~~~~lDAf~G~~~~tfs-------  226 (311)
T KOG1446|consen  157 LANGSE-LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN--ASFIYLLDAFDGTVKSTFS-------  226 (311)
T ss_pred             EecCCC-eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC--CCcEEEEEccCCcEeeeEe-------
Confidence            333322 6777777653 22211  111  1222   999999999987544  5899999999999988888       


Q ss_pred             CCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeec-CCcceEEEEEeCCCCeEEEecCCCc
Q 021291          197 PNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV-HLEPVLCLSIDESCNGGISGGADQK  275 (314)
Q Consensus       197 ~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~dg~  275 (314)
                       ++....... ... +|.|+   ++ ++++|+.||+|.+|++++ +..+..+.+ +..++.++.|+|....++|+  +..
T Consensus       227 -~~~~~~~~~-~~a-~ftPd---s~-Fvl~gs~dg~i~vw~~~t-g~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~  296 (311)
T KOG1446|consen  227 -GYPNAGNLP-LSA-TFTPD---SK-FVLSGSDDGTIHVWNLET-GKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSN  296 (311)
T ss_pred             -eccCCCCcc-eeE-EECCC---Cc-EEEEecCCCcEEEEEcCC-CcEeeEecCCCCCCccccccCCceeeeeec--Cce
Confidence             555544333 333 49998   55 999999999999999998 888888887 78999999999997766665  557


Q ss_pred             EEEEecCCC
Q 021291          276 IVLYNLDHS  284 (314)
Q Consensus       276 i~iw~~~~~  284 (314)
                      +.+|=.+..
T Consensus       297 l~fw~p~~~  305 (311)
T KOG1446|consen  297 LVFWLPDED  305 (311)
T ss_pred             EEEEecccc
Confidence            888866543

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=2.9e-27  Score=189.91  Aligned_cols=244  Identities=25%  Similarity=0.403  Sum_probs=186.1

Q ss_pred             CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v   88 (314)
                      +....+.+|...+..+.|+|++++|++++.||.|++||+.+++.+..+..|..  .|.++.|++  ++.++++++.|+.|
T Consensus        42 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~--~i~~~~~~~--~~~~~~~~~~~~~i  117 (289)
T cd00200          42 ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTS--YVSSVAFSP--DGRILSSSSRDKTI  117 (289)
T ss_pred             CcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCC--cEEEEEEcC--CCCEEEEecCCCeE
Confidence            46778889999999999999999999999999999999998888888888874  499999999  77888888889999


Q ss_pred             EEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCceE
Q 021291           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYM  164 (314)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  164 (314)
                      .+||+++++...  .+..+........+.+. ..........+...+|++...+.... +..|..    ++|+|+++.++
T Consensus       118 ~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~  193 (289)
T cd00200         118 KVWDVETGKCLT--TLRGHTDWVNSVAFSPD-GTFVASSSQDGTIKLWDLRTGKCVAT-LTGHTGEVNSVAFSPDGEKLL  193 (289)
T ss_pred             EEEECCCcEEEE--EeccCCCcEEEEEEcCc-CCEEEEEcCCCcEEEEEcccccccee-EecCccccceEEECCCcCEEE
Confidence            999999765432  12212222333333332 11222222356677777765443322 224442    88999987665


Q ss_pred             EEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCc
Q 021291          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (314)
Q Consensus       165 ~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~  244 (314)
                      +  ++.|+.|++||+++++.+..+.        .|    ...+.++. |+|+   +. ++++++.||.|++||+.+ +.+
T Consensus       194 ~--~~~~~~i~i~d~~~~~~~~~~~--------~~----~~~i~~~~-~~~~---~~-~~~~~~~~~~i~i~~~~~-~~~  253 (289)
T cd00200         194 S--SSSDGTIKLWDLSTGKCLGTLR--------GH----ENGVNSVA-FSPD---GY-LLASGSEDGTIRVWDLRT-GEC  253 (289)
T ss_pred             E--ecCCCcEEEEECCCCceecchh--------hc----CCceEEEE-EcCC---Cc-EEEEEcCCCcEEEEEcCC-cee
Confidence            4  3448999999999888877775        34    33677787 9997   43 788888899999999997 788


Q ss_pred             eEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEe
Q 021291          245 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN  280 (314)
Q Consensus       245 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~  280 (314)
                      +..+..|...|.+++|++++.+|++++.||.|++|+
T Consensus       254 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         254 VQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             EEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            888889999999999999999999999999999996

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=4e-30  Score=195.50  Aligned_cols=192  Identities=18%  Similarity=0.274  Sum_probs=147.5

Q ss_pred             EEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCcee
Q 021291           65 IVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETV  144 (314)
Q Consensus        65 v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (314)
                      |+|+.+..    ..+++|..|.+|+|||.++..+..  .+..+........+.-.   ........+...+|+++.++.+
T Consensus       200 VYClQYDD----~kiVSGlrDnTikiWD~n~~~c~~--~L~GHtGSVLCLqyd~r---viisGSSDsTvrvWDv~tge~l  270 (499)
T KOG0281|consen  200 VYCLQYDD----EKIVSGLRDNTIKIWDKNSLECLK--ILTGHTGSVLCLQYDER---VIVSGSSDSTVRVWDVNTGEPL  270 (499)
T ss_pred             eEEEEecc----hhhhcccccCceEEeccccHHHHH--hhhcCCCcEEeeeccce---EEEecCCCceEEEEeccCCchh
Confidence            99999999    789999999999999999988877  66677766666555432   2334555677888999888765


Q ss_pred             eecCCCCCC--ceeccCCCceEEEeecCcCeEEEEecCCCcee---eeecccccCCCCCcCCCCCceeeeEEEecCCCCC
Q 021291          145 DTDSLCDSK--DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERC---TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQ  219 (314)
Q Consensus       145 ~~~~~~~~~--~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~---~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~  219 (314)
                      .. +.+|.+  +.+-..+. ++ ++++.|.++.+||+.....+   ..+.        ||    ...+..+. |+..   
T Consensus       271 ~t-lihHceaVLhlrf~ng-~m-vtcSkDrsiaVWdm~sps~it~rrVLv--------GH----rAaVNvVd-fd~k---  331 (499)
T KOG0281|consen  271 NT-LIHHCEAVLHLRFSNG-YM-VTCSKDRSIAVWDMASPTDITLRRVLV--------GH----RAAVNVVD-FDDK---  331 (499)
T ss_pred             hH-HhhhcceeEEEEEeCC-EE-EEecCCceeEEEeccCchHHHHHHHHh--------hh----hhheeeec-cccc---
Confidence            53 344444  22222223 33 37888999999999876532   2333        67    45677776 8743   


Q ss_pred             CceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEee
Q 021291          220 GFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFG  290 (314)
Q Consensus       220 g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~  290 (314)
                         ++++++.|.+|++|++.+ .+.+.++.+|...|-|+.+.  ++++++||.|.+|++||++.|.++...
T Consensus       332 ---yIVsASgDRTikvW~~st-~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvL  396 (499)
T KOG0281|consen  332 ---YIVSASGDRTIKVWSTST-CEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVL  396 (499)
T ss_pred             ---eEEEecCCceEEEEeccc-eeeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHHHHH
Confidence               999999999999999999 99999999999999998875  459999999999999999999876543

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=2.2e-28  Score=206.71  Aligned_cols=213  Identities=25%  Similarity=0.358  Sum_probs=175.6

Q ss_pred             CCCceEE-ecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC
Q 021291            7 PPDPVAV-LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD   85 (314)
Q Consensus         7 ~~~~~~~-l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (314)
                      .+..+.+ +.||.+.|.+++|..-+.+|++|+.|.+++|||..+|++...+.+|...  |.++...+    ..+++|+.|
T Consensus       237 ~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~st--v~~~~~~~----~~~~sgs~D  310 (537)
T KOG0274|consen  237 NGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSS--VRCLTIDP----FLLVSGSRD  310 (537)
T ss_pred             cceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCce--EEEEEccC----ceEeeccCC
Confidence            3455666 9999999999999877789999999999999999999999999999955  99999876    788999999


Q ss_pred             CeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEE
Q 021291           86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA  165 (314)
Q Consensus        86 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (314)
                      .+|++|++.++.++.  ++..+..++..                                          ..-++. ++ 
T Consensus       311 ~tVkVW~v~n~~~l~--l~~~h~~~V~~------------------------------------------v~~~~~-~l-  344 (537)
T KOG0274|consen  311 NTVKVWDVTNGACLN--LLRGHTGPVNC------------------------------------------VQLDEP-LL-  344 (537)
T ss_pred             ceEEEEeccCcceEE--EeccccccEEE------------------------------------------EEecCC-EE-
Confidence            999999999987754  22222222221                                          112233 33 


Q ss_pred             EeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCC-Cc
Q 021291          166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG-IP  244 (314)
Q Consensus       166 ~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~-~~  244 (314)
                      ++|+.|++|++||+.+++++..+.        +|    ...+.++. +.+.    . .+++|+.|++|++||+++ . ++
T Consensus       345 vsgs~d~~v~VW~~~~~~cl~sl~--------gH----~~~V~sl~-~~~~----~-~~~Sgs~D~~IkvWdl~~-~~~c  405 (537)
T KOG0274|consen  345 VSGSYDGTVKVWDPRTGKCLKSLS--------GH----TGRVYSLI-VDSE----N-RLLSGSLDTTIKVWDLRT-KRKC  405 (537)
T ss_pred             EEEecCceEEEEEhhhceeeeeec--------CC----cceEEEEE-ecCc----c-eEEeeeeccceEeecCCc-hhhh
Confidence            378889999999999999999999        77    55777776 7762    1 899999999999999998 6 89


Q ss_pred             eEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEeeee
Q 021291          245 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFGIG  292 (314)
Q Consensus       245 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~  292 (314)
                      +..+.+|.+-|..+.+..+  +|++++.|++|++||..+++++....+
T Consensus       406 ~~tl~~h~~~v~~l~~~~~--~Lvs~~aD~~Ik~WD~~~~~~~~~~~~  451 (537)
T KOG0274|consen  406 IHTLQGHTSLVSSLLLRDN--FLVSSSADGTIKLWDAEEGECLRTLEG  451 (537)
T ss_pred             hhhhcCCcccccccccccc--eeEeccccccEEEeecccCceeeeecc
Confidence            9999999999977776555  899999999999999999998876544

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.7e-28  Score=198.40  Aligned_cols=208  Identities=19%  Similarity=0.320  Sum_probs=171.5

Q ss_pred             CCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCC-eEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC
Q 021291            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH-RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (314)
Q Consensus         8 ~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg   86 (314)
                      .+.+++|.+|.+-|+|++.+|...+++|+|.|-+|++||.+.+ .+.+++.+|++-  |.+++|+|. |.+.|++++-|+
T Consensus        87 ~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~Hy--VMqv~fnPk-D~ntFaS~sLDr  163 (794)
T KOG0276|consen   87 GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHY--VMQVAFNPK-DPNTFASASLDR  163 (794)
T ss_pred             ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceE--EEEEEecCC-Cccceeeeeccc
Confidence            4678999999999999999999999999999999999999864 788999999966  999999997 678999999999


Q ss_pred             eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEE
Q 021291           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV  166 (314)
Q Consensus        87 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (314)
                      +|++|.+.+...    .+++..+......                                      +++-+-|+...++
T Consensus       164 TVKVWslgs~~~----nfTl~gHekGVN~--------------------------------------Vdyy~~gdkpylI  201 (794)
T KOG0276|consen  164 TVKVWSLGSPHP----NFTLEGHEKGVNC--------------------------------------VDYYTGGDKPYLI  201 (794)
T ss_pred             cEEEEEcCCCCC----ceeeeccccCcce--------------------------------------EEeccCCCcceEE
Confidence            999999987754    4455544332221                                      3344555444555


Q ss_pred             eecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceE
Q 021291          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (314)
Q Consensus       167 ~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~  246 (314)
                      +|+.|.+|+|||.++..+++++.        ||..    .+..+. |+|.-|    ++++|++||+++||+..+ -+...
T Consensus       202 sgaDD~tiKvWDyQtk~CV~TLe--------GHt~----Nvs~v~-fhp~lp----iiisgsEDGTvriWhs~T-y~lE~  263 (794)
T KOG0276|consen  202 SGADDLTIKVWDYQTKSCVQTLE--------GHTN----NVSFVF-FHPELP----IIISGSEDGTVRIWNSKT-YKLEK  263 (794)
T ss_pred             ecCCCceEEEeecchHHHHHHhh--------cccc----cceEEE-ecCCCc----EEEEecCCccEEEecCcc-eehhh
Confidence            89999999999999999999999        8855    555565 999865    999999999999999988 66777


Q ss_pred             eeecCCcceEEEEEeCCCCeEEEecCCCcEEE
Q 021291          247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVL  278 (314)
Q Consensus       247 ~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~i  278 (314)
                      ++.-.-+.|++++-.+....++.|.++|.|.+
T Consensus       264 tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  264 TLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             hhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence            77777889999999887777888877776544

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=2.8e-28  Score=201.58  Aligned_cols=251  Identities=16%  Similarity=0.279  Sum_probs=190.5

Q ss_pred             CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCe----EEEEEeccCCcccEEEEEEcccCCCCeEEEeec
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR----TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (314)
                      -..+.+.||++.|.+++...+|.+|+||+.|.++++|.++++.    ++....+|.+.  |.+++++.. ...+|+++|.
T Consensus       356 ~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~s--vgava~~~~-~asffvsvS~  432 (775)
T KOG0319|consen  356 SYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNS--VGAVAGSKL-GASFFVSVSQ  432 (775)
T ss_pred             CceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccc--cceeeeccc-CccEEEEecC
Confidence            3445889999999999966688899999999999999885432    45556778855  999999762 3468999999


Q ss_pred             CCeEEEEeCCCCCCCCCC-ee----e--eecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----
Q 021291           85 DGTVKCWDIENGGLSSNP-SL----T--IKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----  153 (314)
Q Consensus        85 dg~v~iwd~~~~~~~~~~-~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  153 (314)
                      |+++++|++...+....| .+    .  .+....+...+++... ............+|++. ...+...+.+|..    
T Consensus       433 D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndk-LiAT~SqDktaKiW~le-~~~l~~vLsGH~RGvw~  510 (775)
T KOG0319|consen  433 DCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDK-LIATGSQDKTAKIWDLE-QLRLLGVLSGHTRGVWC  510 (775)
T ss_pred             CceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCc-eEEecccccceeeeccc-CceEEEEeeCCccceEE
Confidence            999999999863221111 11    1  1122222222222211 11222333445667777 5567778899988    


Q ss_pred             ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcE
Q 021291          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI  233 (314)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i  233 (314)
                      +.|+|..+ +++ +++.|++|+||.+.+..++.+|.        ||    ...+..+. |-.+   |. .|++++.||.|
T Consensus       511 V~Fs~~dq-~la-T~SgD~TvKIW~is~fSClkT~e--------GH----~~aVlra~-F~~~---~~-qliS~~adGli  571 (775)
T KOG0319|consen  511 VSFSKNDQ-LLA-TCSGDKTVKIWSISTFSCLKTFE--------GH----TSAVLRAS-FIRN---GK-QLISAGADGLI  571 (775)
T ss_pred             EEeccccc-eeE-eccCCceEEEEEeccceeeeeec--------Cc----cceeEeee-eeeC---Cc-EEEeccCCCcE
Confidence            89999875 444 66679999999999999999999        88    55777777 8877   44 89999999999


Q ss_pred             EEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCC
Q 021291          234 LVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS  284 (314)
Q Consensus       234 ~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~  284 (314)
                      ++|++.+ +.++.++.+|.+.|++++.++...+++||+.||.|.+|.=.+.
T Consensus       572 KlWnikt-~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te  621 (775)
T KOG0319|consen  572 KLWNIKT-NECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTE  621 (775)
T ss_pred             EEEeccc-hhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence            9999999 9999999999999999999999999999999999999965443

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.96  E-value=3.9e-27  Score=213.30  Aligned_cols=242  Identities=15%  Similarity=0.235  Sum_probs=176.4

Q ss_pred             eEEecCCCCceeEEEEcc-CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEE
Q 021291           11 VAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (314)
Q Consensus        11 ~~~l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~   89 (314)
                      +..+.+ ...|.+++|++ ++.+|++++.||+|++||+.+++.+..+.+|...  |++++|+|. ++.+|++|+.|++|+
T Consensus       526 ~~~~~~-~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~--V~~l~~~p~-~~~~L~Sgs~Dg~v~  601 (793)
T PLN00181        526 VVELAS-RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKR--VWSIDYSSA-DPTLLASGSDDGSVK  601 (793)
T ss_pred             eEEecc-cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCC--EEEEEEcCC-CCCEEEEEcCCCEEE
Confidence            344443 46799999998 5789999999999999999999999999999854  999999963 568999999999999


Q ss_pred             EEeCCCCCCCCCCeeeeecc-eeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCceE
Q 021291           90 CWDIENGGLSSNPSLTIKTN-SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYM  164 (314)
Q Consensus        90 iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  164 (314)
                      +||++++....    .+... ......+..............+...+|+++........+.+|..    +.|. ++.. +
T Consensus       602 iWd~~~~~~~~----~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~-l  675 (793)
T PLN00181        602 LWSINQGVSIG----TIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSST-L  675 (793)
T ss_pred             EEECCCCcEEE----EEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCE-E
Confidence            99999876533    22222 11222222211223334445567788888766544445566765    6675 4443 3


Q ss_pred             EEeecCcCeEEEEecCCC------ceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEc
Q 021291          165 AVAGEQLSEVEIWDLNTA------ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI  238 (314)
Q Consensus       165 ~~~g~~d~~i~vwd~~~~------~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~  238 (314)
                      + +++.|++|++||++..      ..+..+.        +|.    ..+..+. |+|+   +. +|++|+.|+.|++|+.
T Consensus       676 v-s~s~D~~ikiWd~~~~~~~~~~~~l~~~~--------gh~----~~i~~v~-~s~~---~~-~lasgs~D~~v~iw~~  737 (793)
T PLN00181        676 V-SSSTDNTLKLWDLSMSISGINETPLHSFM--------GHT----NVKNFVG-LSVS---DG-YIATGSETNEVFVYHK  737 (793)
T ss_pred             E-EEECCCEEEEEeCCCCccccCCcceEEEc--------CCC----CCeeEEE-EcCC---CC-EEEEEeCCCEEEEEEC
Confidence            3 5667999999999753      4555666        663    3556666 9998   44 9999999999999998


Q ss_pred             cCCCCceEe-------------eecCCcceEEEEEeCCCCeEEEecCCCcEEEEec
Q 021291          239 RNPGIPLTA-------------MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL  281 (314)
Q Consensus       239 ~~~~~~~~~-------------~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~  281 (314)
                      .. ..++..             ...|...|.+++|++++..|++|+.||.|+||++
T Consensus       738 ~~-~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        738 AF-PMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             CC-CCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            75 333322             1234567999999999999999999999999996

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=4.2e-28  Score=188.01  Aligned_cols=246  Identities=18%  Similarity=0.270  Sum_probs=188.8

Q ss_pred             CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v   88 (314)
                      +.+.+|.|-.++|+.+.|.++++++++++.|+.+++|++...+...++.+|...  |+++.|..  ....+++|+.|.+|
T Consensus       210 ~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdk--Vt~ak~~~--~~~~vVsgs~DRti  285 (459)
T KOG0288|consen  210 ELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDK--VTAAKFKL--SHSRVVSGSADRTI  285 (459)
T ss_pred             hhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccc--eeeehhhc--cccceeeccccchh
Confidence            477889999999999999999999999999999999999999999999999955  99999988  65669999999999


Q ss_pred             EEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCC-CC-ceeccCCCceEEE
Q 021291           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCD-SK-DDVPAEGPKYMAV  166 (314)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~  166 (314)
                      ++||+....|.+.+........+.....      .....-.......|+++..........+. -. +..++++..++  
T Consensus       286 K~WDl~k~~C~kt~l~~S~cnDI~~~~~------~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lL--  357 (459)
T KOG0288|consen  286 KLWDLQKAYCSKTVLPGSQCNDIVCSIS------DVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELL--  357 (459)
T ss_pred             hhhhhhhhheeccccccccccceEecce------eeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEe--
Confidence            9999999888765443333332222111      11112223346677776655443332222 22 88899998777  


Q ss_pred             eecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceE
Q 021291          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (314)
Q Consensus       167 ~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~  246 (314)
                      +++.|.++.+.|+++.+....+..        .......-...+. |+|+   +. |+++|+.||.|+||++.+ +++..
T Consensus       358 sssRDdtl~viDlRt~eI~~~~sA--------~g~k~asDwtrvv-fSpd---~~-YvaAGS~dgsv~iW~v~t-gKlE~  423 (459)
T KOG0288|consen  358 SSSRDDTLKVIDLRTKEIRQTFSA--------EGFKCASDWTRVV-FSPD---GS-YVAAGSADGSVYIWSVFT-GKLEK  423 (459)
T ss_pred             eecCCCceeeeecccccEEEEeec--------cccccccccceeE-ECCC---Cc-eeeeccCCCcEEEEEccC-ceEEE
Confidence            457789999999999998887762        2121222355565 9998   44 999999999999999998 88877


Q ss_pred             eeecCCc--ceEEEEEeCCCCeEEEecCCCcEEEEe
Q 021291          247 AMKVHLE--PVLCLSIDESCNGGISGGADQKIVLYN  280 (314)
Q Consensus       247 ~~~~h~~--~v~~~~~~~~~~~l~s~s~dg~i~iw~  280 (314)
                      .+.....  .|++++|+|.|..|++++.++.+.+|.
T Consensus       424 ~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  424 VLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             EeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence            7775544  599999999999999999999999993

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=7.2e-28  Score=186.76  Aligned_cols=272  Identities=15%  Similarity=0.207  Sum_probs=202.6

Q ss_pred             CCCCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCe--EEEEEeccCCcccEEEEEEcccCCCCeEEEe
Q 021291            5 PPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQ   82 (314)
Q Consensus         5 ~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~   82 (314)
                      ..|......+..|.+.|..+.|-++...|++|+.|..|++|++...+  .+.++.+..  ++|+.+.|.+  ++..++++
T Consensus       162 ~lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~--g~it~~d~d~--~~~~~iAa  237 (459)
T KOG0288|consen  162 TLPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSL--GNITSIDFDS--DNKHVIAA  237 (459)
T ss_pred             ccchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccC--CCcceeeecC--CCceEEee
Confidence            35667778889999999999999988899999999999999987665  566777776  4499999999  99999999


Q ss_pred             ecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC--ceeccCC
Q 021291           83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEG  160 (314)
Q Consensus        83 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  160 (314)
                      +.|+.+++|++...+...  .++.+........+...... .......-....|++.........+.+...  ++.+  .
T Consensus       238 s~d~~~r~Wnvd~~r~~~--TLsGHtdkVt~ak~~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~  312 (459)
T KOG0288|consen  238 SNDKNLRLWNVDSLRLRH--TLSGHTDKVTAAKFKLSHSR-VVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--I  312 (459)
T ss_pred             cCCCceeeeeccchhhhh--hhcccccceeeehhhccccc-eeeccccchhhhhhhhhhheeccccccccccceEec--c
Confidence            999999999999887654  33443333333322222111 333444455677888777766666666555  4443  2


Q ss_pred             CceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccC
Q 021291          161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (314)
Q Consensus       161 ~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~  240 (314)
                        ..+++|..|++|++||.++..+....+             ..+.+.++. .+++   |. .+.+.+.|.++.+.|+++
T Consensus       313 --~~~~SgH~DkkvRfwD~Rs~~~~~sv~-------------~gg~vtSl~-ls~~---g~-~lLsssRDdtl~viDlRt  372 (459)
T KOG0288|consen  313 --SDVISGHFDKKVRFWDIRSADKTRSVP-------------LGGRVTSLD-LSMD---GL-ELLSSSRDDTLKVIDLRT  372 (459)
T ss_pred             --eeeeecccccceEEEeccCCceeeEee-------------cCcceeeEe-eccC---Ce-EEeeecCCCceeeeeccc
Confidence              234489999999999999999988887             345788887 8887   54 677779999999999998


Q ss_pred             CCCceEeeecC----CcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEeeeeeeecCCCceeceeecc
Q 021291          241 PGIPLTAMKVH----LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFGIGFVCDQEGNKFGTTWHI  308 (314)
Q Consensus       241 ~~~~~~~~~~h----~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~w~~  308 (314)
                       ......+.+-    ....+.+.|+|++.|+++||.||.|+||++.+++.......-...  ..++..+|.+
T Consensus       373 -~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~--~aI~s~~W~~  441 (459)
T KOG0288|consen  373 -KEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSN--AAITSLSWNP  441 (459)
T ss_pred             -ccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCC--cceEEEEEcC
Confidence             6655555532    234788999999999999999999999999999987764332211  1455555543

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=2.7e-27  Score=178.83  Aligned_cols=246  Identities=12%  Similarity=0.167  Sum_probs=184.6

Q ss_pred             CCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEe--------ccCCcccEEEEEEcccCCCCeEEEeecCCe
Q 021291           16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW--------VHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (314)
Q Consensus        16 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (314)
                      |..+.+.|..|+|||++|++|+.||-|.+||..+|+..+.++        .+.  ++|.|+.|+.  |...+++|+.||.
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd--~aVlci~FSR--DsEMlAsGsqDGk  286 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMD--DAVLCISFSR--DSEMLASGSQDGK  286 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecc--cceEEEeecc--cHHHhhccCcCCc
Confidence            456778899999999999999999999999999987655443        344  4599999999  9999999999999


Q ss_pred             EEEEeCCCCCCCCCCeee-eecceeeEEEeeeeeccccccccCCCCcceeeccCCc--eeeecCCCCCC----ceeccCC
Q 021291           88 VKCWDIENGGLSSNPSLT-IKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE--TVDTDSLCDSK----DDVPAEG  160 (314)
Q Consensus        88 v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~----~~~~~~~  160 (314)
                      |++|.++++.|++  .+. .+........|+-+.+.    ...++......+...+  .....+.+|..    ..|.++|
T Consensus       287 IKvWri~tG~ClR--rFdrAHtkGvt~l~FSrD~Sq----iLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG  360 (508)
T KOG0275|consen  287 IKVWRIETGQCLR--RFDRAHTKGVTCLSFSRDNSQ----ILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDG  360 (508)
T ss_pred             EEEEEEecchHHH--HhhhhhccCeeEEEEccCcch----hhcccccceEEEeccccchhHHHhcCccccccceEEcCCC
Confidence            9999999999876  222 23333333334333322    2222333333332222  33456788887    8899999


Q ss_pred             CceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccC
Q 021291          161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (314)
Q Consensus       161 ~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~  240 (314)
                      .+++  +++.||+|++|+.++.+++.+|+..      +    ....+.++. .-|..+.   .++++...++|+|.++. 
T Consensus       361 ~~ii--saSsDgtvkvW~~KtteC~~Tfk~~------~----~d~~vnsv~-~~PKnpe---h~iVCNrsntv~imn~q-  423 (508)
T KOG0275|consen  361 HHII--SASSDGTVKVWHGKTTECLSTFKPL------G----TDYPVNSVI-LLPKNPE---HFIVCNRSNTVYIMNMQ-  423 (508)
T ss_pred             CeEE--EecCCccEEEecCcchhhhhhccCC------C----CcccceeEE-EcCCCCc---eEEEEcCCCeEEEEecc-
Confidence            8876  5666999999999999999999842      1    233566666 7776542   78888899999999998 


Q ss_pred             CCCceEeeecC---CcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291          241 PGIPLTAMKVH---LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF  289 (314)
Q Consensus       241 ~~~~~~~~~~h---~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~  289 (314)
                       ++.++.+...   .+...+...+|.|.++...+.|+.++.|.+.+|+.-.+
T Consensus       424 -GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~t  474 (508)
T KOG0275|consen  424 -GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERT  474 (508)
T ss_pred             -ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeee
Confidence             7888887632   23556677899999999999999999999999986554

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=8.7e-27  Score=184.34  Aligned_cols=244  Identities=18%  Similarity=0.281  Sum_probs=195.2

Q ss_pred             CCceeEEEEccCCC-EEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCC
Q 021291           18 RASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG   96 (314)
Q Consensus        18 ~~~v~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~   96 (314)
                      .+.|.+++|+|... -+|+.+. -.+.||+..+....+++.-..  ..|.++.|..  ||.+|++|+..|.|+|||+.+.
T Consensus        26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk--~~v~s~~fR~--DG~LlaaGD~sG~V~vfD~k~r  100 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFK--DVVYSVDFRS--DGRLLAAGDESGHVKVFDMKSR  100 (487)
T ss_pred             cCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhc--cceeEEEeec--CCeEEEccCCcCcEEEeccccH
Confidence            46899999999443 3444443 369999988776666665555  4499999999  9999999999999999997764


Q ss_pred             CCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCceEEEeecCcC
Q 021291           97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLS  172 (314)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~  172 (314)
                      ..++  .+..+..+.+...|++..........++....+|++..... ...+.+|.+    .+|+|...++++ +|+.||
T Consensus       101 ~iLR--~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~~~l~~htDYVR~g~~~~~~~hivv-tGsYDg  176 (487)
T KOG0310|consen  101 VILR--QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-QAELSGHTDYVRCGDISPANDHIVV-TGSYDG  176 (487)
T ss_pred             HHHH--HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-EEEecCCcceeEeeccccCCCeEEE-ecCCCc
Confidence            4433  45566677788888888777777888888889999988875 668888988    889999887765 799999


Q ss_pred             eEEEEecCCC-ceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecC
Q 021291          173 EVEIWDLNTA-ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH  251 (314)
Q Consensus       173 ~i~vwd~~~~-~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h  251 (314)
                      .|++||++.. ..+..+.         |    ..++-.+. |-|.   |. .|++++. ..|+|||+..+++.+..+..|
T Consensus       177 ~vrl~DtR~~~~~v~eln---------h----g~pVe~vl-~lps---gs-~iasAgG-n~vkVWDl~~G~qll~~~~~H  237 (487)
T KOG0310|consen  177 KVRLWDTRSLTSRVVELN---------H----GCPVESVL-ALPS---GS-LIASAGG-NSVKVWDLTTGGQLLTSMFNH  237 (487)
T ss_pred             eEEEEEeccCCceeEEec---------C----CCceeeEE-EcCC---CC-EEEEcCC-CeEEEEEecCCceehhhhhcc
Confidence            9999999987 6666665         3    33666676 8887   44 6777764 589999999867877777779


Q ss_pred             CcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291          252 LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF  289 (314)
Q Consensus       252 ~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~  289 (314)
                      ...|+|+++..++..|+|||-|+.|++||+.+-+.+..
T Consensus       238 ~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s  275 (487)
T KOG0310|consen  238 NKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHS  275 (487)
T ss_pred             cceEEEEEeecCCceEeecccccceEEEEccceEEEEe
Confidence            99999999998999999999999999999887776653

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=2.5e-26  Score=187.85  Aligned_cols=242  Identities=17%  Similarity=0.234  Sum_probs=189.6

Q ss_pred             ecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEec-cCCcccEEEEEEcccCCCCeEEEeecCCeEEEEe
Q 021291           14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWV-HSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD   92 (314)
Q Consensus        14 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd   92 (314)
                      ..-+...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.+ |.  ..|-+++|..    ..+.+|+.|+.|..+|
T Consensus       213 ~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~--~rvg~laW~~----~~lssGsr~~~I~~~d  286 (484)
T KOG0305|consen  213 CSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHA--SRVGSLAWNS----SVLSSGSRDGKILNHD  286 (484)
T ss_pred             EecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcC--ceeEEEeccC----ceEEEecCCCcEEEEE
Confidence            333488999999999999999999999999999999999999988 76  5699999976    8999999999999999


Q ss_pred             CCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCc---ceeeccCCceeeecCCCCCC----ceeccCCCceEE
Q 021291           93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPK---DCYEREVGETVDTDSLCDSK----DDVPAEGPKYMA  165 (314)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~  165 (314)
                      ++..+....   .+..+....|.+..  .......+.++..   .+|+. ....+...+..|..    ++|+|-...+||
T Consensus       287 vR~~~~~~~---~~~~H~qeVCgLkw--s~d~~~lASGgnDN~~~Iwd~-~~~~p~~~~~~H~aAVKA~awcP~q~~lLA  360 (484)
T KOG0305|consen  287 VRISQHVVS---TLQGHRQEVCGLKW--SPDGNQLASGGNDNVVFIWDG-LSPEPKFTFTEHTAAVKALAWCPWQSGLLA  360 (484)
T ss_pred             Eecchhhhh---hhhcccceeeeeEE--CCCCCeeccCCCccceEeccC-CCccccEEEeccceeeeEeeeCCCccCceE
Confidence            998865442   24444444444332  3333344444443   34444 22334445556665    999999988888


Q ss_pred             Eee-cCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCc
Q 021291          166 VAG-EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (314)
Q Consensus       166 ~~g-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~  244 (314)
                      +.| +.|+.|++||..++..+..+.             ..+.+.++. |++..  ++....-|..++.|.||+..+ .++
T Consensus       361 sGGGs~D~~i~fwn~~~g~~i~~vd-------------tgsQVcsL~-Wsk~~--kEi~sthG~s~n~i~lw~~ps-~~~  423 (484)
T KOG0305|consen  361 TGGGSADRCIKFWNTNTGARIDSVD-------------TGSQVCSLI-WSKKY--KELLSTHGYSENQITLWKYPS-MKL  423 (484)
T ss_pred             EcCCCcccEEEEEEcCCCcEecccc-------------cCCceeeEE-EcCCC--CEEEEecCCCCCcEEEEeccc-cce
Confidence            653 569999999999999887776             245688887 99983  332344567788999999998 888


Q ss_pred             eEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCC
Q 021291          245 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS  284 (314)
Q Consensus       245 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~  284 (314)
                      +..+.+|...|..++++|+|..+++|+.|.++++|++-..
T Consensus       424 ~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  424 VAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             eeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            9999999999999999999999999999999999998764

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=5.9e-26  Score=169.59  Aligned_cols=266  Identities=17%  Similarity=0.233  Sum_probs=162.2

Q ss_pred             ecCCCCceeEEEEcc-CCCEEEEecCCCeEEEEeCCC-CeEE-EEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEE
Q 021291           14 LRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQ-HRTV-SSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC   90 (314)
Q Consensus        14 l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~-~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~i   90 (314)
                      -....+.|.+|+||| ...+++.+|.||+||+|+++. |... +....|.  .+|.+++|+.  +|..+++|+.|+.+++
T Consensus        23 ~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~--~PvL~v~Wsd--dgskVf~g~~Dk~~k~   98 (347)
T KOG0647|consen   23 PNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHD--GPVLDVCWSD--DGSKVFSGGCDKQAKL   98 (347)
T ss_pred             CCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccC--CCeEEEEEcc--CCceEEeeccCCceEE
Confidence            345678999999999 566777999999999999986 3332 2333455  5599999999  9999999999999999


Q ss_pred             EeCCCCCCCCCCeeeeecceeeEEEeeeeec-cccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeec
Q 021291           91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKE-PYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE  169 (314)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  169 (314)
                      ||+.+++..   .+..+..+...+.+-.... .......-....+.|+.+....+......  +-++..|-.+-+++.+.
T Consensus        99 wDL~S~Q~~---~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP--eRvYa~Dv~~pm~vVat  173 (347)
T KOG0647|consen   99 WDLASGQVS---QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP--ERVYAADVLYPMAVVAT  173 (347)
T ss_pred             EEccCCCee---eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc--ceeeehhccCceeEEEe
Confidence            999999643   2344444444443221110 01111111122233333322211110000  02233333222222333


Q ss_pred             CcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCC-CceEee
Q 021291          170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG-IPLTAM  248 (314)
Q Consensus       170 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~-~~~~~~  248 (314)
                      .++.|.+|+++++...  ++        .+..+.+-.+.+++ ..++   +. ..+.|+-+|.+.+..++.+. ..-.++
T Consensus       174 a~r~i~vynL~n~~te--~k--------~~~SpLk~Q~R~va-~f~d---~~-~~alGsiEGrv~iq~id~~~~~~nFtF  238 (347)
T KOG0647|consen  174 AERHIAVYNLENPPTE--FK--------RIESPLKWQTRCVA-CFQD---KD-GFALGSIEGRVAIQYIDDPNPKDNFTF  238 (347)
T ss_pred             cCCcEEEEEcCCCcch--hh--------hhcCcccceeeEEE-EEec---CC-ceEeeeecceEEEEecCCCCccCceeE
Confidence            3344444444332211  11        22233444566776 4444   22 46999999999999988621 334566


Q ss_pred             ecCCc---------ceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe-------eeeeeecCCCceec
Q 021291          249 KVHLE---------PVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF-------GIGFVCDQEGNKFG  303 (314)
Q Consensus       249 ~~h~~---------~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~-------~~~~~~~~~~~~~~  303 (314)
                      +.|..         .|++|+|+|....|+|++.||++.+||-+...++..       +...++..+|.+|+
T Consensus       239 kCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifa  309 (347)
T KOG0647|consen  239 KCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFA  309 (347)
T ss_pred             EEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEE
Confidence            67763         588999999999999999999999999887776654       34455678887765

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.95  E-value=1.2e-26  Score=172.92  Aligned_cols=213  Identities=22%  Similarity=0.308  Sum_probs=164.6

Q ss_pred             ecCCCCceeEEEEcc-CCCEEEEecCCCeEEEEeCCCCe----------EEEEE-----eccCCcccEEEEEEcccCCCC
Q 021291           14 LRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHR----------TVSSS-----WVHSAAHGIVSVATGPSIGLN   77 (314)
Q Consensus        14 l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~----------~~~~~-----~~~~~~~~v~~~~~~~~~~~~   77 (314)
                      .+.|.+.|+++...+ .|+++++|+.||.|.|||+++..          .+..+     .+|.  -.|.++.|-|. |..
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hk--y~iss~~WyP~-DtG  115 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHK--YAISSAIWYPI-DTG  115 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccce--eeeeeeEEeee-cCc
Confidence            356999999999999 89999999999999999997632          11111     2344  44999999997 668


Q ss_pred             eEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceec
Q 021291           78 KVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVP  157 (314)
Q Consensus        78 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (314)
                      .|.+++.|.++++||.++.+...  .+++...-.     +                                    -+++
T Consensus       116 mFtssSFDhtlKVWDtnTlQ~a~--~F~me~~VY-----s------------------------------------hamS  152 (397)
T KOG4283|consen  116 MFTSSSFDHTLKVWDTNTLQEAV--DFKMEGKVY-----S------------------------------------HAMS  152 (397)
T ss_pred             eeecccccceEEEeecccceeeE--EeecCceee-----h------------------------------------hhcC
Confidence            89999999999999999875422  222221111     1                                    2244


Q ss_pred             cCC-CceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEE
Q 021291          158 AEG-PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW  236 (314)
Q Consensus       158 ~~~-~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vw  236 (314)
                      |-. .+.++++|..|-.|++-|+.+|.....+.        ||    +..++++. |+|.   .+..|++|+.||.|++|
T Consensus       153 p~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls--------GH----r~~vlaV~-Wsp~---~e~vLatgsaDg~irlW  216 (397)
T KOG4283|consen  153 PMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS--------GH----RDGVLAVE-WSPS---SEWVLATGSADGAIRLW  216 (397)
T ss_pred             hhhhcceEEEEecCCCcEEEEeccCCcceeeec--------cc----cCceEEEE-eccC---ceeEEEecCCCceEEEE
Confidence            433 24566689989999999999999999998        88    56889998 9997   55589999999999999


Q ss_pred             EccCCCCceEee--------------ecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeE
Q 021291          237 DIRNPGIPLTAM--------------KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVL  288 (314)
Q Consensus       237 d~~~~~~~~~~~--------------~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~  288 (314)
                      |++.-..+...+              .+|.+.|+.++|..++.++++++.|..+++|+..+|+...
T Consensus       217 DiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl  282 (397)
T KOG4283|consen  217 DIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTL  282 (397)
T ss_pred             EeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccc
Confidence            998532333333              3567789999999999999999999999999999887554

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.95  E-value=2.2e-26  Score=180.55  Aligned_cols=249  Identities=14%  Similarity=0.150  Sum_probs=194.3

Q ss_pred             cCCCCceeEEEEccC-CCEEEEecCCCeEEEEeCCCCe----------EEEEEeccCCcccEEEEEEcccCCCCeEEEee
Q 021291           15 RGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHR----------TVSSSWVHSAAHGIVSVATGPSIGLNKVISQG   83 (314)
Q Consensus        15 ~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (314)
                      --|.+.|+.+.+.|+ ..++|+.+..+.|.|||..+..          .-.++.+|...  -++|+|++. ....|++++
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~e--g~glsWn~~-~~g~Lls~~  197 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKE--GYGLSWNRQ-QEGTLLSGS  197 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccc--ccccccccc-cceeEeecc
Confidence            359999999999994 5678888999999999976531          12267888854  688999985 446899999


Q ss_pred             cCCeEEEEeCCCCCCC-----CCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccC-CceeeecCCCCCC----
Q 021291           84 RDGTVKCWDIENGGLS-----SNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREV-GETVDTDSLCDSK----  153 (314)
Q Consensus        84 ~dg~v~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----  153 (314)
                      .|++|++||+......     .+..+..+......+.+.+...........++...+|+.+. .........+|..    
T Consensus       198 ~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~  277 (422)
T KOG0264|consen  198 DDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNC  277 (422)
T ss_pred             CCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeE
Confidence            9999999999765431     12234445556666777777777778888889999999987 3344555666766    


Q ss_pred             ceeccCCCceEEEeecCcCeEEEEecCCCc-eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCc
Q 021291          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS  232 (314)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~  232 (314)
                      ++|+|.+.+++| +|+.|++|.+||+|+.. ++.++.        +|    ...+.++. |+|..   ...|++++.|+.
T Consensus       278 ~~fnp~~~~ilA-T~S~D~tV~LwDlRnL~~~lh~~e--------~H----~dev~~V~-WSPh~---etvLASSg~D~r  340 (422)
T KOG0264|consen  278 VAFNPFNEFILA-TGSADKTVALWDLRNLNKPLHTFE--------GH----EDEVFQVE-WSPHN---ETVLASSGTDRR  340 (422)
T ss_pred             EEeCCCCCceEE-eccCCCcEEEeechhcccCceecc--------CC----CcceEEEE-eCCCC---CceeEecccCCc
Confidence            999999988776 67779999999999765 556666        66    55789998 99983   339999999999


Q ss_pred             EEEEEccCCC-------------CceEeeecCCcceEEEEEeCCCCe-EEEecCCCcEEEEecCC
Q 021291          233 ILVWDIRNPG-------------IPLTAMKVHLEPVLCLSIDESCNG-GISGGADQKIVLYNLDH  283 (314)
Q Consensus       233 i~vwd~~~~~-------------~~~~~~~~h~~~v~~~~~~~~~~~-l~s~s~dg~i~iw~~~~  283 (314)
                      +.|||+..-+             +++....||...|..+.|+|+..+ |+|.+.|+.+.||++..
T Consensus       341 l~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  341 LNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             EEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            9999996422             234666799999999999998775 68889999999999873

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=7.4e-27  Score=175.93  Aligned_cols=245  Identities=15%  Similarity=0.190  Sum_probs=180.7

Q ss_pred             CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v   88 (314)
                      +.++.|.||.+.|+.++-......+.+++.|.+.+||.+++++|+..+.+|.+.  |.+++|++  .+.++++++.|++-
T Consensus       139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GS--VNsikfh~--s~~L~lTaSGD~ta  214 (481)
T KOG0300|consen  139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGS--VNSIKFHN--SGLLLLTASGDETA  214 (481)
T ss_pred             eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccc--eeeEEecc--ccceEEEccCCcch
Confidence            567788899999999999887779999999999999999999999999999965  99999999  88999999999999


Q ss_pred             EEEeCCCCCCCCCCee--eeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCc
Q 021291           89 KCWDIENGGLSSNPSL--TIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPK  162 (314)
Q Consensus        89 ~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  162 (314)
                      .||...-.-.+.++.-  .........+.   +....     ........+-...+.+...+.+|..    ..|...|+.
T Consensus       215 HIW~~av~~~vP~~~a~~~hSsEeE~e~s---De~~~-----d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q  286 (481)
T KOG0300|consen  215 HIWKAAVNWEVPSNNAPSDHSSEEEEEHS---DEHNR-----DTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQ  286 (481)
T ss_pred             HHHHHhhcCcCCCCCCCCCCCchhhhhcc---ccccc-----ccccccccCCceeeeeeeeeeccccceEehhhhcCcce
Confidence            9997432111100000  00000000000   00000     0000001111123455666778877    557777776


Q ss_pred             eEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCC
Q 021291          163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG  242 (314)
Q Consensus       163 ~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~  242 (314)
                      ++  +++.|.+..+||+++++.+..+.        ||..+...    +. -+|.   .+ ++++.+.|-+.++||++..-
T Consensus       287 ~v--TaSWDRTAnlwDVEtge~v~~Lt--------GHd~ELtH----cs-tHpt---Qr-LVvTsSrDtTFRLWDFReaI  347 (481)
T KOG0300|consen  287 MV--TASWDRTANLWDVETGEVVNILT--------GHDSELTH----CS-THPT---QR-LVVTSSRDTTFRLWDFREAI  347 (481)
T ss_pred             ee--eeeccccceeeeeccCceecccc--------Ccchhccc----cc-cCCc---ce-EEEEeccCceeEeccchhhc
Confidence            55  78999999999999999999998        88654433    22 6665   33 89999999999999999755


Q ss_pred             CceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCe
Q 021291          243 IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST  285 (314)
Q Consensus       243 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~  285 (314)
                      +.+..++||.+.|+++.|..+.+ +++||.|.+|++||+++-+
T Consensus       348 ~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMR  389 (481)
T KOG0300|consen  348 QSVAVFQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMR  389 (481)
T ss_pred             ceeeeecccccceeEEEEecCCc-eeecCCCceEEEeeecccc
Confidence            67888999999999999987765 8999999999999997654

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=5.9e-26  Score=178.46  Aligned_cols=218  Identities=18%  Similarity=0.290  Sum_probs=167.3

Q ss_pred             cCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCC
Q 021291           15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE   94 (314)
Q Consensus        15 ~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~   94 (314)
                      ++|.+.|.+++.++||+|||+|+.|..|.||+.++.+.++.+.+|.+.  |.+++|-.  ..+.|++++.|++|++|+++
T Consensus       199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~--V~~L~fr~--gt~~lys~s~Drsvkvw~~~  274 (479)
T KOG0299|consen  199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGA--VSSLAFRK--GTSELYSASADRSVKVWSID  274 (479)
T ss_pred             ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccc--eeeeeeec--CccceeeeecCCceEEEehh
Confidence            489999999999999999999999999999999999999999999955  99999988  77899999999999999999


Q ss_pred             CCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeE
Q 021291           95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEV  174 (314)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i  174 (314)
                      ....+.    ++..++....                                        .++.-...-+++.|..|+++
T Consensus       275 ~~s~ve----tlyGHqd~v~----------------------------------------~IdaL~reR~vtVGgrDrT~  310 (479)
T KOG0299|consen  275 QLSYVE----TLYGHQDGVL----------------------------------------GIDALSRERCVTVGGRDRTV  310 (479)
T ss_pred             HhHHHH----HHhCCcccee----------------------------------------eechhcccceEEecccccee
Confidence            876543    3333322222                                        12222233355678789999


Q ss_pred             EEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeee-cC--
Q 021291          175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK-VH--  251 (314)
Q Consensus       175 ~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~-~h--  251 (314)
                      ++|++.....+ .+.        ++    .+.+-|++ |-.+    . .+++|+.||.|.+|++.. .+|+.+.. +|  
T Consensus       311 rlwKi~eesql-ifr--------g~----~~sidcv~-~In~----~-HfvsGSdnG~IaLWs~~K-Kkplf~~~~AHgv  370 (479)
T KOG0299|consen  311 RLWKIPEESQL-IFR--------GG----EGSIDCVA-FIND----E-HFVSGSDNGSIALWSLLK-KKPLFTSRLAHGV  370 (479)
T ss_pred             EEEecccccee-eee--------CC----CCCeeeEE-Eecc----c-ceeeccCCceEEEeeecc-cCceeEeeccccc
Confidence            99999543332 333        44    34555665 6543    1 799999999999999987 77776543 33  


Q ss_pred             ---------CcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeee----E------eeeeeeecCCCc
Q 021291          252 ---------LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYV----L------FGIGFVCDQEGN  300 (314)
Q Consensus       252 ---------~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~----~------~~~~~~~~~~~~  300 (314)
                               ..+|++|+..|...++++||.+|.|++|.++.+-..    +      ++..+.+..+|.
T Consensus       371 ~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk  438 (479)
T KOG0299|consen  371 IPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGK  438 (479)
T ss_pred             cCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCC
Confidence                     228999999999999999999999999999988221    1      245566677776

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=2.3e-24  Score=155.19  Aligned_cols=255  Identities=18%  Similarity=0.210  Sum_probs=175.5

Q ss_pred             eEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCC------Ce---------EEEEEeccCCcccEEEEEEcccCC
Q 021291           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ------HR---------TVSSSWVHSAAHGIVSVATGPSIG   75 (314)
Q Consensus        11 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~------~~---------~~~~~~~~~~~~~v~~~~~~~~~~   75 (314)
                      +-+|. -+..|.+++|+|.|.+.+.|+...+++|-....      +.         ..+.-+.|.  ..|+|.+|+|  .
T Consensus        26 i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhk--gsiyc~~ws~--~  100 (350)
T KOG0641|consen   26 INILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHK--GSIYCTAWSP--C  100 (350)
T ss_pred             EEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccC--ccEEEEEecC--c
Confidence            44443 467899999999999999999999999874321      10         112224455  4599999999  9


Q ss_pred             CCeEEEeecCCeEEEEeCCCCCCCC-CCeeee--ecceeeEEEeeeeeccccccccCCCCc--ceeeccCC-ceeeecCC
Q 021291           76 LNKVISQGRDGTVKCWDIENGGLSS-NPSLTI--KTNSYHFCKLSLVKEPYANAKQANEPK--DCYEREVG-ETVDTDSL  149 (314)
Q Consensus        76 ~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~  149 (314)
                      |.++++|+.|.+|++.-.+...+.. -+.+++  +........|--....-......++..  .++...-+ ......+.
T Consensus       101 geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s  180 (350)
T KOG0641|consen  101 GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS  180 (350)
T ss_pred             cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec
Confidence            9999999999999998776544322 122333  333333333322222222222222222  22222222 23344566


Q ss_pred             CCCC--ce-eccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCC-CceeeeEEEecCCCCCCceEEE
Q 021291          150 CDSK--DD-VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKG-RGMCMAVQAYLPSKSQGFVNVL  225 (314)
Q Consensus       150 ~~~~--~~-~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~-~~~~~~~~~~~p~~~~g~~~l~  225 (314)
                      +|.+  ++ ++.+|-  ++++|+.|.+|++||++-..++.++...      -|.... .+.+.+++ ..|.   |+ +|+
T Consensus       181 ghtghilalyswn~~--m~~sgsqdktirfwdlrv~~~v~~l~~~------~~~~glessavaav~-vdps---gr-ll~  247 (350)
T KOG0641|consen  181 GHTGHILALYSWNGA--MFASGSQDKTIRFWDLRVNSCVNTLDND------FHDGGLESSAVAAVA-VDPS---GR-LLA  247 (350)
T ss_pred             CCcccEEEEEEecCc--EEEccCCCceEEEEeeeccceeeeccCc------ccCCCcccceeEEEE-ECCC---cc-eee
Confidence            7766  33 334442  4458999999999999998888877521      232222 24566666 8887   77 999


Q ss_pred             EeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCC
Q 021291          226 AGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS  284 (314)
Q Consensus       226 ~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~  284 (314)
                      +|..|....+||++- +++++.+..|...|.++.|+|...|+.++|.|.+|++-|+...
T Consensus       248 sg~~dssc~lydirg-~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgd  305 (350)
T KOG0641|consen  248 SGHADSSCMLYDIRG-GRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD  305 (350)
T ss_pred             eccCCCceEEEEeeC-CceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccc
Confidence            999999999999997 8999999999999999999999999999999999999998743

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.95  E-value=5.7e-26  Score=177.39  Aligned_cols=222  Identities=16%  Similarity=0.244  Sum_probs=180.6

Q ss_pred             CceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCC
Q 021291           19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL   98 (314)
Q Consensus        19 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~   98 (314)
                      ..++++...|..+.+++|+.|..+.++|...++.+..+++|...  |+.+.++|  +...+++++.|-.|+||.......
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kk--i~~v~~~~--~~~~v~~aSad~~i~vws~~~~s~  295 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKK--ITSVKFHK--DLDTVITASADEIIRVWSVPLSSE  295 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceE--EEEEEecc--chhheeecCCcceEEeeccccccC
Confidence            56888888887778999999999999999999999999999955  99999999  888999999999999999876553


Q ss_pred             CCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEe
Q 021291           99 SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWD  178 (314)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd  178 (314)
                      ..  ....+..+...                                        +..+|.|++++  +++.|++..+.|
T Consensus       296 ~~--~~~~h~~~V~~----------------------------------------ls~h~tgeYll--sAs~d~~w~Fsd  331 (506)
T KOG0289|consen  296 PT--SSRPHEEPVTG----------------------------------------LSLHPTGEYLL--SASNDGTWAFSD  331 (506)
T ss_pred             cc--cccccccccee----------------------------------------eeeccCCcEEE--EecCCceEEEEE
Confidence            22  11111111111                                        45779999887  567799999999


Q ss_pred             cCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEE
Q 021291          179 LNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCL  258 (314)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~  258 (314)
                      ++++..+.....         . .......+.+ |+||   |. +|.+|..||.|+|||+.+ +..+..+.+|.++|..+
T Consensus       332 ~~~g~~lt~vs~---------~-~s~v~~ts~~-fHpD---gL-ifgtgt~d~~vkiwdlks-~~~~a~Fpght~~vk~i  395 (506)
T KOG0289|consen  332 ISSGSQLTVVSD---------E-TSDVEYTSAA-FHPD---GL-IFGTGTPDGVVKIWDLKS-QTNVAKFPGHTGPVKAI  395 (506)
T ss_pred             ccCCcEEEEEee---------c-cccceeEEee-EcCC---ce-EEeccCCCceEEEEEcCC-ccccccCCCCCCceeEE
Confidence            999998876652         1 1223466676 9998   55 999999999999999998 66889999999999999


Q ss_pred             EEeCCCCeEEEecCCCcEEEEecCCCeeeEe--------eeeeeecCCCceece
Q 021291          259 SIDESCNGGISGGADQKIVLYNLDHSTYVLF--------GIGFVCDQEGNKFGT  304 (314)
Q Consensus       259 ~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~--------~~~~~~~~~~~~~~~  304 (314)
                      +|+.+|.+|++++.|+.|++||++..+....        ...+++++.|..++.
T Consensus       396 ~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~  449 (506)
T KOG0289|consen  396 SFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGI  449 (506)
T ss_pred             EeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEe
Confidence            9999999999999999999999998764432        456778888877765

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.95  E-value=1.1e-26  Score=174.39  Aligned_cols=182  Identities=15%  Similarity=0.278  Sum_probs=139.3

Q ss_pred             CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v   88 (314)
                      ..+++|..|.++|+++.|+|...+|++|+.|++|++||..+....+.++......+|.++.|+|  .|.+|+.|..-.++
T Consensus       163 PvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP--sGefllvgTdHp~~  240 (430)
T KOG0640|consen  163 PVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP--SGEFLLVGTDHPTL  240 (430)
T ss_pred             ceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecC--CCceEEEecCCCce
Confidence            4688999999999999999999999999999999999998654444444334346699999999  99999999999999


Q ss_pred             EEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEee
Q 021291           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG  168 (314)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  168 (314)
                      ++||+++-++..    .......+...+..                                   +.+++.++ + .+++
T Consensus       241 rlYdv~T~Qcfv----sanPd~qht~ai~~-----------------------------------V~Ys~t~~-l-YvTa  279 (430)
T KOG0640|consen  241 RLYDVNTYQCFV----SANPDDQHTGAITQ-----------------------------------VRYSSTGS-L-YVTA  279 (430)
T ss_pred             eEEeccceeEee----ecCcccccccceeE-----------------------------------EEecCCcc-E-EEEe
Confidence            999999987633    11111111111110                                   44778776 3 3489


Q ss_pred             cCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEee
Q 021291          169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM  248 (314)
Q Consensus       169 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~  248 (314)
                      +.||.|++||=-+++++.++..       +|   ....+.+.. |..+   |+ ++++.+.|..+++|.+.+ ++++..+
T Consensus       280 SkDG~IklwDGVS~rCv~t~~~-------AH---~gsevcSa~-Ftkn---~k-yiLsSG~DS~vkLWEi~t-~R~l~~Y  343 (430)
T KOG0640|consen  280 SKDGAIKLWDGVSNRCVRTIGN-------AH---GGSEVCSAV-FTKN---GK-YILSSGKDSTVKLWEIST-GRMLKEY  343 (430)
T ss_pred             ccCCcEEeeccccHHHHHHHHh-------hc---CCceeeeEE-EccC---Ce-EEeecCCcceeeeeeecC-CceEEEE
Confidence            9999999999999999999875       66   233455555 9887   55 999999999999999987 6666554


Q ss_pred             e
Q 021291          249 K  249 (314)
Q Consensus       249 ~  249 (314)
                      .
T Consensus       344 t  344 (430)
T KOG0640|consen  344 T  344 (430)
T ss_pred             e
Confidence            4

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.95  E-value=6.7e-26  Score=177.00  Aligned_cols=211  Identities=21%  Similarity=0.374  Sum_probs=171.4

Q ss_pred             CCCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC
Q 021291            6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD   85 (314)
Q Consensus         6 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (314)
                      +..+.+.+|+||...|+.+.|+|+...+++++.|-.|+||......+......|..+  |+.+..+|  .|.+|++++.|
T Consensus       249 ~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~--V~~ls~h~--tgeYllsAs~d  324 (506)
T KOG0289|consen  249 PSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEP--VTGLSLHP--TGEYLLSASND  324 (506)
T ss_pred             chhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccccccccc--ceeeeecc--CCcEEEEecCC
Confidence            345778899999999999999999999999999999999999988888888889844  99999999  99999999999


Q ss_pred             CeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEE
Q 021291           86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA  165 (314)
Q Consensus        86 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (314)
                      ++..+.|++++.+..     ........+.+..                                   .+|+|||.  ++
T Consensus       325 ~~w~Fsd~~~g~~lt-----~vs~~~s~v~~ts-----------------------------------~~fHpDgL--if  362 (506)
T KOG0289|consen  325 GTWAFSDISSGSQLT-----VVSDETSDVEYTS-----------------------------------AAFHPDGL--IF  362 (506)
T ss_pred             ceEEEEEccCCcEEE-----EEeeccccceeEE-----------------------------------eeEcCCce--EE
Confidence            999999999987533     1111111111111                                   56999983  55


Q ss_pred             EeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCce
Q 021291          166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL  245 (314)
Q Consensus       166 ~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~  245 (314)
                      .+|..|+.|+|||+.++.....|+        +|    .+.+.++. |+-+   |. +|++++.|+.|++||+|. .+..
T Consensus       363 gtgt~d~~vkiwdlks~~~~a~Fp--------gh----t~~vk~i~-FsEN---GY-~Lat~add~~V~lwDLRK-l~n~  424 (506)
T KOG0289|consen  363 GTGTPDGVVKIWDLKSQTNVAKFP--------GH----TGPVKAIS-FSEN---GY-WLATAADDGSVKLWDLRK-LKNF  424 (506)
T ss_pred             eccCCCceEEEEEcCCccccccCC--------CC----CCceeEEE-eccC---ce-EEEEEecCCeEEEEEehh-hccc
Confidence            589999999999999999888898        77    55788887 9976   55 999999999999999997 5555


Q ss_pred             EeeecC-CcceEEEEEeCCCCeEEEecCCCcEEEEe
Q 021291          246 TAMKVH-LEPVLCLSIDESCNGGISGGADQKIVLYN  280 (314)
Q Consensus       246 ~~~~~h-~~~v~~~~~~~~~~~l~s~s~dg~i~iw~  280 (314)
                      .++.-. ..+|.++.|++.|.+|+.++.|=.|++++
T Consensus       425 kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~  460 (506)
T KOG0289|consen  425 KTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICK  460 (506)
T ss_pred             ceeeccccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence            555532 23799999999999999997775555554

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=2.4e-26  Score=183.26  Aligned_cols=232  Identities=15%  Similarity=0.181  Sum_probs=166.2

Q ss_pred             CCCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCe----EEEEEeccCCcccEEEEEEcccCCCCeEEE
Q 021291            6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR----TVSSSWVHSAAHGIVSVATGPSIGLNKVIS   81 (314)
Q Consensus         6 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s   81 (314)
                      .|...-..|++|+..|.++++.|.|..|++|+.|.+|++||+....    ..+.++..+ ...|.++.|++  .++.|++
T Consensus       155 IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E-~h~i~sl~ys~--Tg~~iLv  231 (641)
T KOG0772|consen  155 IPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCE-THQINSLQYSV--TGDQILV  231 (641)
T ss_pred             CCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCccc-ccccceeeecC--CCCeEEE
Confidence            4555667899999999999999999999999999999999987532    222222211 13399999999  8899888


Q ss_pred             eecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceec
Q 021291           82 QGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVP  157 (314)
Q Consensus        82 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  157 (314)
                      .+.....+|+|-...+...    ..+...+..                       ++       ....+|..    .+|+
T Consensus       232 vsg~aqakl~DRdG~~~~e----~~KGDQYI~-----------------------Dm-------~nTKGHia~lt~g~wh  277 (641)
T KOG0772|consen  232 VSGSAQAKLLDRDGFEIVE----FSKGDQYIR-----------------------DM-------YNTKGHIAELTCGCWH  277 (641)
T ss_pred             EecCcceeEEccCCceeee----eeccchhhh-----------------------hh-------hccCCceeeeeccccc
Confidence            8888899999977654322    111111100                       00       01122222    5799


Q ss_pred             cCCCceEEEeecCcCeEEEEecCCCc-eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEE
Q 021291          158 AEGPKYMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW  236 (314)
Q Consensus       158 ~~~~~~~~~~g~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vw  236 (314)
                      |..+..++ +++.||++++||+...+ ....++.       .-....+..+..++ |+|+   |. +||+|+.||.|.+|
T Consensus       278 P~~k~~Fl-T~s~DgtlRiWdv~~~k~q~qVik~-------k~~~g~Rv~~tsC~-~nrd---g~-~iAagc~DGSIQ~W  344 (641)
T KOG0772|consen  278 PDNKEEFL-TCSYDGTLRIWDVNNTKSQLQVIKT-------KPAGGKRVPVTSCA-WNRD---GK-LIAAGCLDGSIQIW  344 (641)
T ss_pred             cCcccceE-EecCCCcEEEEecCCchhheeEEee-------ccCCCcccCceeee-cCCC---cc-hhhhcccCCceeee
Confidence            99988887 56679999999998544 3333432       11122344666776 9999   55 89999999999999


Q ss_pred             EccCCC-C-ceEeeecCCc--ceEEEEEeCCCCeEEEecCCCcEEEEecCCCeee
Q 021291          237 DIRNPG-I-PLTAMKVHLE--PVLCLSIDESCNGGISGGADQKIVLYNLDHSTYV  287 (314)
Q Consensus       237 d~~~~~-~-~~~~~~~h~~--~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~  287 (314)
                      +..... . ....-++|..  .|++|.|+.+|++|++-|.|+++++||++..++.
T Consensus       345 ~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkp  399 (641)
T KOG0772|consen  345 DKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKP  399 (641)
T ss_pred             ecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccc
Confidence            986422 2 2344457877  8999999999999999999999999999877654

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=7.4e-26  Score=191.41  Aligned_cols=206  Identities=24%  Similarity=0.384  Sum_probs=169.8

Q ss_pred             eEEecC-CCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEE-EeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291           11 VAVLRG-HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS-SWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (314)
Q Consensus        11 ~~~l~~-h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v   88 (314)
                      .+.+.+ |...+.+..|.  +.++++++.|++|++||..++..+.. +.+|.+.  |+++++..  .+.+|++|+.|.++
T Consensus       200 ~~~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~--V~~l~~~~--~~~~lvsgS~D~t~  273 (537)
T KOG0274|consen  200 YKVLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGG--VWGLAFPS--GGDKLVSGSTDKTE  273 (537)
T ss_pred             ceeecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCC--ceeEEEec--CCCEEEEEecCCcE
Confidence            344454 67788899998  55899999999999999999998888 9999954  99999987  67999999999999


Q ss_pred             EEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEee
Q 021291           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG  168 (314)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  168 (314)
                      ++||..++++..    .+..+......+.                                        -. +. ..++|
T Consensus       274 rvWd~~sg~C~~----~l~gh~stv~~~~----------------------------------------~~-~~-~~~sg  307 (537)
T KOG0274|consen  274 RVWDCSTGECTH----SLQGHTSSVRCLT----------------------------------------ID-PF-LLVSG  307 (537)
T ss_pred             EeEecCCCcEEE----EecCCCceEEEEE----------------------------------------cc-Cc-eEeec
Confidence            999999998855    3433333322222                                        11 22 33478


Q ss_pred             cCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEee
Q 021291          169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM  248 (314)
Q Consensus       169 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~  248 (314)
                      +.|.+|++|++.++..+..+.        +|    .+.+.++. ++-+      ++++|+.|++|++||+.+ ++++..+
T Consensus       308 s~D~tVkVW~v~n~~~l~l~~--------~h----~~~V~~v~-~~~~------~lvsgs~d~~v~VW~~~~-~~cl~sl  367 (537)
T KOG0274|consen  308 SRDNTVKVWDVTNGACLNLLR--------GH----TGPVNCVQ-LDEP------LLVSGSYDGTVKVWDPRT-GKCLKSL  367 (537)
T ss_pred             cCCceEEEEeccCcceEEEec--------cc----cccEEEEE-ecCC------EEEEEecCceEEEEEhhh-ceeeeee
Confidence            899999999999999999888        66    55788877 6633      999999999999999997 9999999


Q ss_pred             ecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCC-eeeEe
Q 021291          249 KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS-TYVLF  289 (314)
Q Consensus       249 ~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~-~~~~~  289 (314)
                      .+|...|.++.+++. ..+++|+.|+.|++||+++. +++..
T Consensus       368 ~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~t  408 (537)
T KOG0274|consen  368 SGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHT  408 (537)
T ss_pred             cCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhh
Confidence            999999999998875 58999999999999999999 66654

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.3e-26  Score=195.54  Aligned_cols=209  Identities=17%  Similarity=0.294  Sum_probs=173.4

Q ss_pred             EecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEe
Q 021291           13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD   92 (314)
Q Consensus        13 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd   92 (314)
                      .|..-+..|..++|+|....++++-..|.|.+||.+-+.++..|..|.++  |..++|+|  .+.+|+||++|-.|++|+
T Consensus         4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGp--VRgv~FH~--~qplFVSGGDDykIkVWn   79 (1202)
T KOG0292|consen    4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGP--VRGVDFHP--TQPLFVSGGDDYKIKVWN   79 (1202)
T ss_pred             hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCc--cceeeecC--CCCeEEecCCccEEEEEe
Confidence            45556788999999999999999999999999999999999999999955  99999999  889999999999999999


Q ss_pred             CCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcC
Q 021291           93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS  172 (314)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~  172 (314)
                      ..+.++.-    ++..+-.....                                      +.|++.-.-++  +++.|.
T Consensus        80 Yk~rrclf----tL~GHlDYVRt--------------------------------------~~FHheyPWIl--SASDDQ  115 (1202)
T KOG0292|consen   80 YKTRRCLF----TLLGHLDYVRT--------------------------------------VFFHHEYPWIL--SASDDQ  115 (1202)
T ss_pred             cccceehh----hhccccceeEE--------------------------------------eeccCCCceEE--EccCCC
Confidence            99987743    33332111110                                      33666655444  788899


Q ss_pred             eEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCC-------C---
Q 021291          173 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP-------G---  242 (314)
Q Consensus       173 ~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~-------~---  242 (314)
                      +|+||+..+++++..+.        ||    ...++|.+ |+|.+.    .+++++.|-+|+|||+.-.       +   
T Consensus       116 TIrIWNwqsr~~iavlt--------GH----nHYVMcAq-FhptED----lIVSaSLDQTVRVWDisGLRkk~~~pg~~e  178 (1202)
T KOG0292|consen  116 TIRIWNWQSRKCIAVLT--------GH----NHYVMCAQ-FHPTED----LIVSASLDQTVRVWDISGLRKKNKAPGSLE  178 (1202)
T ss_pred             eEEEEeccCCceEEEEe--------cC----ceEEEeec-cCCccc----eEEEecccceEEEEeecchhccCCCCCCch
Confidence            99999999999999999        78    55899998 999733    8999999999999998521       1   


Q ss_pred             ------------------CceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCee
Q 021291          243 ------------------IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTY  286 (314)
Q Consensus       243 ------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~  286 (314)
                                        ...+.+.||...|+-++|+|.-.+|+||++|..|++|.+..-+-
T Consensus       179 ~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa  240 (1202)
T KOG0292|consen  179 DQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA  240 (1202)
T ss_pred             hhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc
Confidence                              02245779999999999999999999999999999999876653

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=8.4e-26  Score=194.58  Aligned_cols=257  Identities=15%  Similarity=0.175  Sum_probs=191.3

Q ss_pred             CCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCC------------------CeEEEEEeccCCcccEEEEE
Q 021291            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ------------------HRTVSSSWVHSAAHGIVSVA   69 (314)
Q Consensus         8 ~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~------------------~~~~~~~~~~~~~~~v~~~~   69 (314)
                      ++.+.++..|.+.|+|+.|+|||++||+|+.|+.|.||+...                  .++...+.+|...  |..++
T Consensus        59 ~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~D--V~Dv~  136 (942)
T KOG0973|consen   59 PKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSD--VLDVN  136 (942)
T ss_pred             chhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCc--cceec
Confidence            367778889999999999999999999999999999998762                  1367788899966  99999


Q ss_pred             EcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCcee---ee
Q 021291           70 TGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETV---DT  146 (314)
Q Consensus        70 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  146 (314)
                      |+|  ++.+|++++.|++|.|||..+.++..  .+..+........+.+.+...+.. .++....+|+.......   ..
T Consensus       137 Wsp--~~~~lvS~s~DnsViiwn~~tF~~~~--vl~~H~s~VKGvs~DP~Gky~ASq-sdDrtikvwrt~dw~i~k~It~  211 (942)
T KOG0973|consen  137 WSP--DDSLLVSVSLDNSVIIWNAKTFELLK--VLRGHQSLVKGVSWDPIGKYFASQ-SDDRTLKVWRTSDWGIEKSITK  211 (942)
T ss_pred             cCC--CccEEEEecccceEEEEccccceeee--eeecccccccceEECCccCeeeee-cCCceEEEEEcccceeeEeecc
Confidence            999  99999999999999999999997665  555555556666666666554433 33345566665442211   11


Q ss_pred             cCCCCCC------ceeccCCCceEEEeecC--cCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCC-
Q 021291          147 DSLCDSK------DDVPAEGPKYMAVAGEQ--LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSK-  217 (314)
Q Consensus       147 ~~~~~~~------~~~~~~~~~~~~~~g~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~-  217 (314)
                      .+..-..      ++|+|||+++...-+-.  -.++.|.+-.+.+.-..+.        ||    ...+.++. |+|.- 
T Consensus       212 pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~Lv--------GH----~~p~evvr-FnP~lf  278 (942)
T KOG0973|consen  212 PFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLV--------GH----SAPVEVVR-FNPKLF  278 (942)
T ss_pred             chhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeee--------cC----CCceEEEE-eChHHh
Confidence            1111111      99999999876433222  2468888877777777777        88    44777776 99831 


Q ss_pred             ----C---CCc-----eEEEEeecCCcEEEEEccCCCCceEee-ecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCC
Q 021291          218 ----S---QGF-----VNVLAGYEDGSILVWDIRNPGIPLTAM-KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS  284 (314)
Q Consensus       218 ----~---~g~-----~~l~~g~~dg~i~vwd~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~  284 (314)
                          .   ..+     ..+|+|+.|++|.||.... .+|+... .-....|.+++|+|||..|+.+|.||+|.+..++..
T Consensus       279 e~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~-~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  279 ERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL-PRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             ccccccCCccCCCcceEEEEEecCCccEEEEecCC-CCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence                1   111     1689999999999999977 5555433 345679999999999999999999999999998865


Q ss_pred             e
Q 021291          285 T  285 (314)
Q Consensus       285 ~  285 (314)
                      +
T Consensus       358 E  358 (942)
T KOG0973|consen  358 E  358 (942)
T ss_pred             H
Confidence            4

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.95  E-value=1.4e-25  Score=186.20  Aligned_cols=247  Identities=20%  Similarity=0.331  Sum_probs=185.5

Q ss_pred             EEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEe----------------------------------
Q 021291           12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW----------------------------------   57 (314)
Q Consensus        12 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~----------------------------------   57 (314)
                      .++.||...|.+++++.+...+++|+.+ .+++|+..+.++++++.                                  
T Consensus       367 i~~~GHR~dVRsl~vS~d~~~~~Sga~~-SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~  445 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCVSSDSILLASGAGE-SIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASAS  445 (888)
T ss_pred             eeeccchhheeEEEeecCceeeeecCCC-cEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhh
Confidence            4567999999999999988777777654 79999999888876653                                  


Q ss_pred             ------ccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCC-----CCCCCCCeeeeecc---eeeEEEeeeeeccc
Q 021291           58 ------VHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN-----GGLSSNPSLTIKTN---SYHFCKLSLVKEPY  123 (314)
Q Consensus        58 ------~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~-----~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  123 (314)
                            .|.+.  |++++.+|  |+..+++||.|.+|++||..-     +...+  .+.++..   ...........+|.
T Consensus       446 l~Eti~AHdga--IWsi~~~p--D~~g~vT~saDktVkfWdf~l~~~~~gt~~k--~lsl~~~rtLel~ddvL~v~~Spd  519 (888)
T KOG0306|consen  446 LVETIRAHDGA--IWSISLSP--DNKGFVTGSADKTVKFWDFKLVVSVPGTQKK--VLSLKHTRTLELEDDVLCVSVSPD  519 (888)
T ss_pred             hhhhhhccccc--eeeeeecC--CCCceEEecCCcEEEEEeEEEEeccCcccce--eeeeccceEEeccccEEEEEEcCC
Confidence                  56644  99999999  999999999999999999742     11111  1222111   11112222333333


Q ss_pred             ccc---ccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCC
Q 021291          124 ANA---KQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGS  196 (314)
Q Consensus       124 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~  196 (314)
                      ...   ..-.....++-+++.+... .+.+|.-    +.++||++.+  ++|+.|..|++|-+.=|.+-..+-       
T Consensus       520 gk~LaVsLLdnTVkVyflDtlKFfl-sLYGHkLPV~smDIS~DSkli--vTgSADKnVKiWGLdFGDCHKS~f-------  589 (888)
T KOG0306|consen  520 GKLLAVSLLDNTVKVYFLDTLKFFL-SLYGHKLPVLSMDISPDSKLI--VTGSADKNVKIWGLDFGDCHKSFF-------  589 (888)
T ss_pred             CcEEEEEeccCeEEEEEecceeeee-eecccccceeEEeccCCcCeE--EeccCCCceEEeccccchhhhhhh-------
Confidence            222   2233455556666555443 3445554    7889998733  378889999999999999988887       


Q ss_pred             CCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcE
Q 021291          197 PNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKI  276 (314)
Q Consensus       197 ~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i  276 (314)
                       +|.    ..++++. |.|.   .. .+.+++.|+.|+-||-.. -..++.+.+|...|++++..|+|.+++|+|.|..|
T Consensus       590 -AHd----DSvm~V~-F~P~---~~-~FFt~gKD~kvKqWDg~k-Fe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sI  658 (888)
T KOG0306|consen  590 -AHD----DSVMSVQ-FLPK---TH-LFFTCGKDGKVKQWDGEK-FEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSI  658 (888)
T ss_pred             -ccc----CceeEEE-Eccc---ce-eEEEecCcceEEeechhh-hhhheeeccchheeeeeEEcCCCCeEEeccCCcee
Confidence             774    4889998 9996   33 899999999999999988 78899999999999999999999999999999999


Q ss_pred             EEEecCCCee
Q 021291          277 VLYNLDHSTY  286 (314)
Q Consensus       277 ~iw~~~~~~~  286 (314)
                      ++|.......
T Consensus       659 RlwE~tde~~  668 (888)
T KOG0306|consen  659 RLWERTDEIL  668 (888)
T ss_pred             EeeeccCcce
Confidence            9998765433

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=3.1e-26  Score=166.28  Aligned_cols=218  Identities=14%  Similarity=0.171  Sum_probs=164.2

Q ss_pred             EecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCC---eEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEE
Q 021291           13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH---RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (314)
Q Consensus        13 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~   89 (314)
                      .-..|.+.|..+...--|++|||++.|++|+|+.++..   +.+.++.+|.++  |+.++|....-|.+|++++.||.|.
T Consensus         6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GP--Vwqv~wahPk~G~iLAScsYDgkVI   83 (299)
T KOG1332|consen    6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGP--VWKVAWAHPKFGTILASCSYDGKVI   83 (299)
T ss_pred             hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCC--eeEEeecccccCcEeeEeecCceEE
Confidence            44579999999988888999999999999999998764   578899999955  9999998655789999999999999


Q ss_pred             EEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeec
Q 021291           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE  169 (314)
Q Consensus        90 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  169 (314)
                      ||.-++++..+...+..+......                                        ++|.|.+-.+++++++
T Consensus        84 iWke~~g~w~k~~e~~~h~~SVNs----------------------------------------V~wapheygl~Lacas  123 (299)
T KOG1332|consen   84 IWKEENGRWTKAYEHAAHSASVNS----------------------------------------VAWAPHEYGLLLACAS  123 (299)
T ss_pred             EEecCCCchhhhhhhhhhccccee----------------------------------------ecccccccceEEEEee
Confidence            999998865442112222211111                                        5677887777778888


Q ss_pred             CcCeEEEEecCCC-c-eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCC----------ceEEEEeecCCcEEEEE
Q 021291          170 QLSEVEIWDLNTA-E-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQG----------FVNVLAGYEDGSILVWD  237 (314)
Q Consensus       170 ~d~~i~vwd~~~~-~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g----------~~~l~~g~~dg~i~vwd  237 (314)
                      .||.|.|.+.+.. . ....+..       .|..    -+.++. |.|....|          -..|++|+.|..|+||+
T Consensus       124 SDG~vsvl~~~~~g~w~t~ki~~-------aH~~----GvnsVs-wapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~  191 (299)
T KOG1332|consen  124 SDGKVSVLTYDSSGGWTTSKIVF-------AHEI----GVNSVS-WAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWK  191 (299)
T ss_pred             CCCcEEEEEEcCCCCccchhhhh-------cccc----ccceee-ecCcCCCccccccCcccccceeeccCCccceeeee
Confidence            8999999988754 1 2222221       5533    456665 77753222          12699999999999999


Q ss_pred             ccCCC-CceEeeecCCcceEEEEEeCCC----CeEEEecCCCcEEEEecCCC
Q 021291          238 IRNPG-IPLTAMKVHLEPVLCLSIDESC----NGGISGGADQKIVLYNLDHS  284 (314)
Q Consensus       238 ~~~~~-~~~~~~~~h~~~v~~~~~~~~~----~~l~s~s~dg~i~iw~~~~~  284 (314)
                      ..+.. ..-+.|.+|.+.|..++|.|.-    .+|+++|+||++.||..+..
T Consensus       192 ~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e  243 (299)
T KOG1332|consen  192 FDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEE  243 (299)
T ss_pred             cCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCc
Confidence            98732 2335589999999999997753    36899999999999987744

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=1.4e-24  Score=184.29  Aligned_cols=187  Identities=18%  Similarity=0.222  Sum_probs=142.1

Q ss_pred             ecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCC-CCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEE
Q 021291           36 GTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIG-LNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFC  114 (314)
Q Consensus        36 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  114 (314)
                      |+.++.|++|+..+...+..+.+|...  |.+++|+|  + +++|++|+.|++|+|||+.++.....   ... ..  ..
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~--V~~lafsP--~~~~lLASgS~DgtIrIWDi~t~~~~~~---~i~-~p--~~  119 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSS--ILDLQFNP--CFSEILASGSEDLTIRVWEIPHNDESVK---EIK-DP--QC  119 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCC--EEEEEEcC--CCCCEEEEEeCCCeEEEEECCCCCcccc---ccc-cc--eE
Confidence            667899999998887888889999854  99999999  5 68999999999999999986532110   000 00  00


Q ss_pred             EeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecc
Q 021291          115 KLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQ  190 (314)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~  190 (314)
                                                      .+.+|..    ++|+|++..+++ +++.|++|++||+++++....+. 
T Consensus       120 --------------------------------~L~gH~~~V~sVaf~P~g~~iLa-SgS~DgtIrIWDl~tg~~~~~i~-  165 (568)
T PTZ00420        120 --------------------------------ILKGHKKKISIIDWNPMNYYIMC-SSGFDSFVNIWDIENEKRAFQIN-  165 (568)
T ss_pred             --------------------------------EeecCCCcEEEEEECCCCCeEEE-EEeCCCeEEEEECCCCcEEEEEe-
Confidence                                            0111211    679999877665 56679999999999988766654 


Q ss_pred             cccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEE-----EEeCCCC
Q 021291          191 NSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCL-----SIDESCN  265 (314)
Q Consensus       191 ~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~-----~~~~~~~  265 (314)
                              |    ...+.++. |+|+   |. +|++++.|+.|+|||+++ +..+.++.+|.+.+...     .|++++.
T Consensus       166 --------~----~~~V~Sls-wspd---G~-lLat~s~D~~IrIwD~Rs-g~~i~tl~gH~g~~~s~~v~~~~fs~d~~  227 (568)
T PTZ00420        166 --------M----PKKLSSLK-WNIK---GN-LLSGTCVGKHMHIIDPRK-QEIASSFHIHDGGKNTKNIWIDGLGGDDN  227 (568)
T ss_pred             --------c----CCcEEEEE-ECCC---CC-EEEEEecCCEEEEEECCC-CcEEEEEecccCCceeEEEEeeeEcCCCC
Confidence                    2    23578887 9998   55 889999999999999998 88888999998765443     3458888


Q ss_pred             eEEEecCCC----cEEEEecCCC
Q 021291          266 GGISGGADQ----KIVLYNLDHS  284 (314)
Q Consensus       266 ~l~s~s~dg----~i~iw~~~~~  284 (314)
                      +|+|++.|+    .|+|||++..
T Consensus       228 ~IlTtG~d~~~~R~VkLWDlr~~  250 (568)
T PTZ00420        228 YILSTGFSKNNMREMKLWDLKNT  250 (568)
T ss_pred             EEEEEEcCCCCccEEEEEECCCC
Confidence            999988774    7999999953

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.95  E-value=2.3e-25  Score=184.99  Aligned_cols=268  Identities=18%  Similarity=0.300  Sum_probs=191.6

Q ss_pred             CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v   88 (314)
                      .+..+|.||..+|+++.|+..|..|++||.|+.|.+||+-...-+..+++|...  |+.+-|..  +.+++++.+.|+.|
T Consensus        98 ~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~--iT~~~F~~--~~~~lvS~sKDs~i  173 (888)
T KOG0306|consen   98 EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDS--ITQALFLN--GDSFLVSVSKDSMI  173 (888)
T ss_pred             ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHH--HhHHhccC--CCeEEEEeccCceE
Confidence            667889999999999999999999999999999999999887888899999844  99999988  77899999999999


Q ss_pred             EEEeCCCCCCCCCCeeeeecceee-----------------EEEeee---------------------------------
Q 021291           89 KCWDIENGGLSSNPSLTIKTNSYH-----------------FCKLSL---------------------------------  118 (314)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~---------------------------------  118 (314)
                      ++||+++..|...  .-.+.....                 ...+.+                                 
T Consensus       174 K~WdL~tqhCf~T--hvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~  251 (888)
T KOG0306|consen  174 KFWDLETQHCFET--HVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLV  251 (888)
T ss_pred             EEEecccceeeeE--EecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEe
Confidence            9999988765431  000000000                 000000                                 


Q ss_pred             -eeccc---------------------------------------------------------------------cccc-
Q 021291          119 -VKEPY---------------------------------------------------------------------ANAK-  127 (314)
Q Consensus       119 -~~~~~---------------------------------------------------------------------~~~~-  127 (314)
                       ..+..                                                                     .... 
T Consensus       252 ~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~  331 (888)
T KOG0306|consen  252 TDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPS  331 (888)
T ss_pred             ecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEec
Confidence             00000                                                                     0000 


Q ss_pred             ---------cCCCCcceeeccC-C-------ceeeecCCCCCC----ceeccCCCceEEEeecCcCeEEEEecCCCceee
Q 021291          128 ---------QANEPKDCYEREV-G-------ETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCT  186 (314)
Q Consensus       128 ---------~~~~~~~~~~~~~-~-------~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~  186 (314)
                               .......++.+.. .       ........+|+.    ++++.+.  +++++|+ .+.+++|+..+.++++
T Consensus       332 ~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~--~~~~Sga-~~SikiWn~~t~kciR  408 (888)
T KOG0306|consen  332 GGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDS--ILLASGA-GESIKIWNRDTLKCIR  408 (888)
T ss_pred             CCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCc--eeeeecC-CCcEEEEEccCcceeE
Confidence                     0000111111111 0       011123445655    6666654  4555665 5899999999999999


Q ss_pred             eecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCe
Q 021291          187 RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNG  266 (314)
Q Consensus       187 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  266 (314)
                      ++.              .+.+.+.. |-|.   ++ +++.|..+|.+.+||+.+ ...+.++.+|.+.|++++.+||+..
T Consensus       409 Ti~--------------~~y~l~~~-Fvpg---d~-~Iv~G~k~Gel~vfdlaS-~~l~Eti~AHdgaIWsi~~~pD~~g  468 (888)
T KOG0306|consen  409 TIT--------------CGYILASK-FVPG---DR-YIVLGTKNGELQVFDLAS-ASLVETIRAHDGAIWSISLSPDNKG  468 (888)
T ss_pred             Eec--------------cccEEEEE-ecCC---Cc-eEEEeccCCceEEEEeeh-hhhhhhhhccccceeeeeecCCCCc
Confidence            998              33677776 9996   33 999999999999999998 8888899999999999999999999


Q ss_pred             EEEecCCCcEEEEecCC-----Cee---eE-----------eeeeeeecCCCceecee
Q 021291          267 GISGGADQKIVLYNLDH-----STY---VL-----------FGIGFVCDQEGNKFGTT  305 (314)
Q Consensus       267 l~s~s~dg~i~iw~~~~-----~~~---~~-----------~~~~~~~~~~~~~~~~~  305 (314)
                      ++|||.|.+|++||+.-     +.+   +.           .+...+.+|+|+.++..
T Consensus       469 ~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVs  526 (888)
T KOG0306|consen  469 FVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVS  526 (888)
T ss_pred             eEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEE
Confidence            99999999999999742     111   10           25667788999888754

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.7e-25  Score=176.19  Aligned_cols=212  Identities=17%  Similarity=0.266  Sum_probs=165.0

Q ss_pred             CCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCC-
Q 021291           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG-   96 (314)
Q Consensus        18 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-   96 (314)
                      .++|.|++-+|+|.+|+.|+..|.|++|.+.+|+.+..+..|-..  |+|+.|+.  |+.+|+|||.||.|.+|.+..- 
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~--ITcL~fs~--dgs~iiTgskDg~V~vW~l~~lv  156 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQS--ITCLKFSD--DGSHIITGSKDGAVLVWLLTDLV  156 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccc--eeEEEEeC--CCcEEEecCCCccEEEEEEEeec
Confidence            578999999999999999999999999999999999999888855  99999999  9999999999999999987432 


Q ss_pred             ----CCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcC
Q 021291           97 ----GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS  172 (314)
Q Consensus        97 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~  172 (314)
                          ....+|...+..+......+.+.                                    +.+...++  .+.+.|.
T Consensus       157 ~a~~~~~~~p~~~f~~HtlsITDl~ig------------------------------------~Gg~~~rl--~TaS~D~  198 (476)
T KOG0646|consen  157 SADNDHSVKPLHIFSDHTLSITDLQIG------------------------------------SGGTNARL--YTASEDR  198 (476)
T ss_pred             ccccCCCccceeeeccCcceeEEEEec------------------------------------CCCccceE--EEecCCc
Confidence                11112333333333222222211                                    22222333  3778899


Q ss_pred             eEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCC----------
Q 021291          173 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG----------  242 (314)
Q Consensus       173 ~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~----------  242 (314)
                      ++++||+..+..+.++..             ...+.+++ .+|.   ++ .+++|+++|.|.+.++....          
T Consensus       199 t~k~wdlS~g~LLlti~f-------------p~si~av~-lDpa---e~-~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~  260 (476)
T KOG0646|consen  199 TIKLWDLSLGVLLLTITF-------------PSSIKAVA-LDPA---ER-VVYIGTEEGKIFQNLLFKLSGQSAGVNQKG  260 (476)
T ss_pred             eEEEEEeccceeeEEEec-------------CCcceeEE-Eccc---cc-EEEecCCcceEEeeehhcCCcccccccccc
Confidence            999999999999888773             34677777 8887   44 89999999999998875421          


Q ss_pred             -----CceEeeecCCc--ceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291          243 -----IPLTAMKVHLE--PVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF  289 (314)
Q Consensus       243 -----~~~~~~~~h~~--~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~  289 (314)
                           ..+..+.+|..  +|+|++.+-||.+|++|+.||+|.|||+.+.+.+.+
T Consensus       261 ~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRt  314 (476)
T KOG0646|consen  261 RHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRT  314 (476)
T ss_pred             cccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHH
Confidence                 23455778988  999999999999999999999999999998876654

>PTZ00421 coronin; Provisional

Probab=99.94  E-value=3.9e-24  Score=180.70  Aligned_cols=206  Identities=17%  Similarity=0.214  Sum_probs=154.0

Q ss_pred             CCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEE-------------EEEeccCCcccEEEEEEcccCCCCeEEEee
Q 021291           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV-------------SSSWVHSAAHGIVSVATGPSIGLNKVISQG   83 (314)
Q Consensus        17 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~-------------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (314)
                      |-..|.....++++..+++++.+.....|+...+..+             ..+.+|..  .|.+++|+|. ++++|++|+
T Consensus        19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~--~V~~v~fsP~-d~~~LaSgS   95 (493)
T PTZ00421         19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEG--PIIDVAFNPF-DPQKLFTAS   95 (493)
T ss_pred             ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCC--CEEEEEEcCC-CCCEEEEEe
Confidence            3455666777778777888888888888876544322             13567774  4999999985 457999999


Q ss_pred             cCCeEEEEeCCCCCCCC---CCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----cee
Q 021291           84 RDGTVKCWDIENGGLSS---NPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDV  156 (314)
Q Consensus        84 ~dg~v~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  156 (314)
                      .|++|++||+.++....   .++..+                                          .+|..    ++|
T Consensus        96 ~DgtIkIWdi~~~~~~~~~~~~l~~L------------------------------------------~gH~~~V~~l~f  133 (493)
T PTZ00421         96 EDGTIMGWGIPEEGLTQNISDPIVHL------------------------------------------QGHTKKVGIVSF  133 (493)
T ss_pred             CCCEEEEEecCCCccccccCcceEEe------------------------------------------cCCCCcEEEEEe
Confidence            99999999998754211   111111                                          22222    679


Q ss_pred             ccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEE
Q 021291          157 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW  236 (314)
Q Consensus       157 ~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vw  236 (314)
                      +|++..+++ +++.|++|+|||+++++.+..+.        +|    ...+.++. |+|+   |. +|++++.|+.|++|
T Consensus       134 ~P~~~~iLa-Sgs~DgtVrIWDl~tg~~~~~l~--------~h----~~~V~sla-~spd---G~-lLatgs~Dg~IrIw  195 (493)
T PTZ00421        134 HPSAMNVLA-SAGADMVVNVWDVERGKAVEVIK--------CH----SDQITSLE-WNLD---GS-LLCTTSKDKKLNII  195 (493)
T ss_pred             CcCCCCEEE-EEeCCCEEEEEECCCCeEEEEEc--------CC----CCceEEEE-EECC---CC-EEEEecCCCEEEEE
Confidence            998766665 56679999999999998888777        66    34688887 9998   55 89999999999999


Q ss_pred             EccCCCCceEeeecCCcc-eEEEEEeCCCCeEEEec----CCCcEEEEecCCCee
Q 021291          237 DIRNPGIPLTAMKVHLEP-VLCLSIDESCNGGISGG----ADQKIVLYNLDHSTY  286 (314)
Q Consensus       237 d~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~s~s----~dg~i~iw~~~~~~~  286 (314)
                      |+++ ++.+..+.+|... +..+.|.+++..+++++    .|+.|++||+++...
T Consensus       196 D~rs-g~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~  249 (493)
T PTZ00421        196 DPRD-GTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS  249 (493)
T ss_pred             ECCC-CcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC
Confidence            9998 7888889999765 45677888877777654    479999999987653

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=5.8e-26  Score=185.62  Aligned_cols=222  Identities=21%  Similarity=0.333  Sum_probs=175.4

Q ss_pred             ceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCC--eEEEEEeccCCcccEEEEEE-cccCCCCeEEEeecCC
Q 021291           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH--RTVSSSWVHSAAHGIVSVAT-GPSIGLNKVISQGRDG   86 (314)
Q Consensus        10 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~v~~~~~-~~~~~~~~l~s~~~dg   86 (314)
                      .+..++.|.+.|+.++...+++.|+++|.|-+|++|+...+  -++.+++.|.  +.|.|+++ .+  +..++++|+-|+
T Consensus        65 ~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~--DYVkcla~~ak--~~~lvaSgGLD~  140 (735)
T KOG0308|consen   65 YIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHK--DYVKCLAYIAK--NNELVASGGLDR  140 (735)
T ss_pred             hhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhccc--chheeeeeccc--CceeEEecCCCc
Confidence            47889999999999999999999999999999999999877  5788888898  55999999 56  778999999999


Q ss_pred             eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEE
Q 021291           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV  166 (314)
Q Consensus        87 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (314)
                      .|.+||++++....  +...  .....+..           ..+....+|.                ++.++.|  .+++
T Consensus       141 ~IflWDin~~~~~l--~~s~--n~~t~~sl-----------~sG~k~siYS----------------LA~N~t~--t~iv  187 (735)
T KOG0308|consen  141 KIFLWDINTGTATL--VASF--NNVTVNSL-----------GSGPKDSIYS----------------LAMNQTG--TIIV  187 (735)
T ss_pred             cEEEEEccCcchhh--hhhc--cccccccC-----------CCCCccceee----------------eecCCcc--eEEE
Confidence            99999999873200  1011  11111100           0011111111                3344555  3445


Q ss_pred             eecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceE
Q 021291          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (314)
Q Consensus       167 ~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~  246 (314)
                      +|+.++.+++||.++.+.+..+.        ||.+    .+..+. .++|   |. .+++++.||+|++||+.. .+++.
T Consensus       188 sGgtek~lr~wDprt~~kimkLr--------GHTd----NVr~ll-~~dD---Gt-~~ls~sSDgtIrlWdLgq-QrCl~  249 (735)
T KOG0308|consen  188 SGGTEKDLRLWDPRTCKKIMKLR--------GHTD----NVRVLL-VNDD---GT-RLLSASSDGTIRLWDLGQ-QRCLA  249 (735)
T ss_pred             ecCcccceEEeccccccceeeee--------cccc----ceEEEE-EcCC---CC-eEeecCCCceEEeeeccc-cceee
Confidence            78888999999999999999998        8855    556665 7777   65 899999999999999998 89999


Q ss_pred             eeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCee
Q 021291          247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTY  286 (314)
Q Consensus       247 ~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~  286 (314)
                      ++..|.+.|+++..+++-..+.+|+.||.|..=|+.+...
T Consensus       250 T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~  289 (735)
T KOG0308|consen  250 TYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAK  289 (735)
T ss_pred             eEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchh
Confidence            9999999999999999999999999999999999998543

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=4.3e-25  Score=166.36  Aligned_cols=242  Identities=16%  Similarity=0.218  Sum_probs=159.3

Q ss_pred             eEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeE--EEEEeccCCcccEEEEEEcccCCCCeEE-EeecCCe
Q 021291           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT--VSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGT   87 (314)
Q Consensus        11 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~   87 (314)
                      +.+|+||.+.|++++|+.||++|+|++.|++|+||++++-..  -+.++..-..+.-+.+.|.|  |-.-++ ++-...+
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~Fap--Dc~s~vv~~~~g~~  156 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAP--DCKSVVVSVKRGNK  156 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECC--CcceEEEEEccCCE
Confidence            557889999999999999999999999999999999876321  11222211113368999999  766544 5556678


Q ss_pred             EEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC--ceeccCCCceEE
Q 021291           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMA  165 (314)
Q Consensus        88 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  165 (314)
                      +++|-+...+--.-+....+.....+     .                             ..|+-  +.+--.+...++
T Consensus       157 l~vyk~~K~~dG~~~~~~v~~D~~~f-----~-----------------------------~kh~v~~i~iGiA~~~k~i  202 (420)
T KOG2096|consen  157 LCVYKLVKKTDGSGSHHFVHIDNLEF-----E-----------------------------RKHQVDIINIGIAGNAKYI  202 (420)
T ss_pred             EEEEEeeecccCCCCccccccccccc-----c-----------------------------hhcccceEEEeecCCceEE
Confidence            99998754332110000000000000     0                             00000  111111222333


Q ss_pred             EeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCC----
Q 021291          166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP----  241 (314)
Q Consensus       166 ~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~----  241 (314)
                      .+++.|..|.+|+++ |+.+..+..        .    ...-+.. +.+|+   |+ ++++++..-.|++|..--.    
T Consensus       203 msas~dt~i~lw~lk-Gq~L~~idt--------n----q~~n~~a-avSP~---GR-Fia~~gFTpDVkVwE~~f~kdG~  264 (420)
T KOG2096|consen  203 MSASLDTKICLWDLK-GQLLQSIDT--------N----QSSNYDA-AVSPD---GR-FIAVSGFTPDVKVWEPIFTKDGT  264 (420)
T ss_pred             EEecCCCcEEEEecC-Cceeeeecc--------c----cccccce-eeCCC---Cc-EEEEecCCCCceEEEEEeccCcc
Confidence            477789999999999 887777662        1    1112222 48998   77 8888888889999986320    


Q ss_pred             ---CCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeE-------e-----------eeeeeecCCCc
Q 021291          242 ---GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVL-------F-----------GIGFVCDQEGN  300 (314)
Q Consensus       242 ---~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~-------~-----------~~~~~~~~~~~  300 (314)
                         -..+.+++||...|+.++|+++...++|.|.||+++|||++-.-..-       .           ...++.+|+|.
T Consensus       265 fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~  344 (420)
T KOG2096|consen  265 FQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGD  344 (420)
T ss_pred             hhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCc
Confidence               13456789999999999999999999999999999999987432221       1           24567789998


Q ss_pred             eeceee
Q 021291          301 KFGTTW  306 (314)
Q Consensus       301 ~~~~~w  306 (314)
                      .|+.+.
T Consensus       345 ~lA~s~  350 (420)
T KOG2096|consen  345 SLAVSF  350 (420)
T ss_pred             EEEeec
Confidence            887654

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=5.6e-26  Score=185.71  Aligned_cols=220  Identities=19%  Similarity=0.274  Sum_probs=162.0

Q ss_pred             CCCcee---EEEEcc-CCCEEEEecCCCeEEEEeCCCCe------EEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC
Q 021291           17 HRASVT---DVCFHQ-TKPILFAGTTGGELRIWDTVQHR------TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (314)
Q Consensus        17 h~~~v~---~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg   86 (314)
                      |...|.   .+..+. .+++|+|||.||.|++|++....      .+.+++.|.  +.|..+....  +++.|+++|.|-
T Consensus        20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~Hs--DWVNDiiL~~--~~~tlIS~SsDt   95 (735)
T KOG0308|consen   20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHS--DWVNDIILCG--NGKTLISASSDT   95 (735)
T ss_pred             ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhH--hHHhhHHhhc--CCCceEEecCCc
Confidence            445555   455554 67789999999999999986532      367778888  6699999988  889999999999


Q ss_pred             eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEE
Q 021291           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV  166 (314)
Q Consensus        87 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (314)
                      +|++|+........  .-++..+......                                      +++- ..+..+++
T Consensus        96 TVK~W~~~~~~~~c--~stir~H~DYVkc--------------------------------------la~~-ak~~~lva  134 (735)
T KOG0308|consen   96 TVKVWNAHKDNTFC--MSTIRTHKDYVKC--------------------------------------LAYI-AKNNELVA  134 (735)
T ss_pred             eEEEeecccCcchh--Hhhhhcccchhee--------------------------------------eeec-ccCceeEE
Confidence            99999998763111  1122222111111                                      2221 22334566


Q ss_pred             eecCcCeEEEEecCCCc--eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCc
Q 021291          167 AGEQLSEVEIWDLNTAE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (314)
Q Consensus       167 ~g~~d~~i~vwd~~~~~--~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~  244 (314)
                      +|+.|+.|.+||+.++.  .+.++.........   ......+++++ .++.   |. .|++|+.++.|++||.++ .+.
T Consensus       135 SgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~---sG~k~siYSLA-~N~t---~t-~ivsGgtek~lr~wDprt-~~k  205 (735)
T KOG0308|consen  135 SGGLDRKIFLWDINTGTATLVASFNNVTVNSLG---SGPKDSIYSLA-MNQT---GT-IIVSGGTEKDLRLWDPRT-CKK  205 (735)
T ss_pred             ecCCCccEEEEEccCcchhhhhhccccccccCC---CCCccceeeee-cCCc---ce-EEEecCcccceEEecccc-ccc
Confidence            89999999999999873  34433321111111   12355788887 7776   43 899999999999999999 788


Q ss_pred             eEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEee
Q 021291          245 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFG  290 (314)
Q Consensus       245 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~  290 (314)
                      +..+.||.+.|..+..+.+|..++|+|.||+|++||+...+++.+.
T Consensus       206 imkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~  251 (735)
T KOG0308|consen  206 IMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATY  251 (735)
T ss_pred             eeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeE
Confidence            8889999999999999999999999999999999999999988764

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.94  E-value=3.5e-25  Score=162.60  Aligned_cols=264  Identities=26%  Similarity=0.380  Sum_probs=184.5

Q ss_pred             CCCCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeec
Q 021291            5 PPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (314)
Q Consensus         5 ~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (314)
                      ++|+.|..+|++|.+.|+++.|..++ +|++|..-|.|++|++.+.+.+..++.+.. ..|+.+.-.|  + ..|.+-+.
T Consensus         1 ~~pPdP~fvLRp~~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~-~~it~lq~~p--~-d~l~tqgR   75 (323)
T KOG0322|consen    1 MVPPDPFFVLRPHSSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGR-LFITNLQSIP--N-DSLDTQGR   75 (323)
T ss_pred             CCCCCCeeEeccccchheehhhccch-hhhcccccceEEEEEeecCccchhhhhhcc-ceeeceeecC--C-cchhhcCC
Confidence            35679999999999999999998877 489999999999999999888888884432 5699999888  5 88999999


Q ss_pred             CCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccc--c-ccCC-CCcceeeccCCceeeec-----CCCCCC--
Q 021291           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN--A-KQAN-EPKDCYEREVGETVDTD-----SLCDSK--  153 (314)
Q Consensus        85 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~--  153 (314)
                      |+.+.+|++.....+.  +..+..+...+|.++....+...  . .... +....-..+-+......     ..+..+  
T Consensus        76 d~~L~lw~ia~s~~i~--i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsv  153 (323)
T KOG0322|consen   76 DPLLILWTIAYSAFIS--IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSV  153 (323)
T ss_pred             CceEEEEEccCcceEE--EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCce
Confidence            9999999998876554  44555667777877766544332  0 0000 00000000111111100     111111  


Q ss_pred             ceec---cCCCceEEEeecCcCeEEEEecCCCceeeeecccccCC--CCCcCCCC-------------------------
Q 021291          154 DDVP---AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGG--SPNFSSKG-------------------------  203 (314)
Q Consensus       154 ~~~~---~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~h~~~~-------------------------  203 (314)
                      +++.   .++.++++++|.++|.+.+||+.++..+..++......  ...|..++                         
T Consensus       154 mc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~S  233 (323)
T KOG0322|consen  154 MCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYS  233 (323)
T ss_pred             eeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeee
Confidence            4444   45677888899999999999999875444443211100  00111000                         


Q ss_pred             -----------------CceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCe
Q 021291          204 -----------------RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNG  266 (314)
Q Consensus       204 -----------------~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  266 (314)
                                       +..+..+. +.||   ++ ++++++.|+.|+||+.++ .+++..++.|.+.|++++|+|+...
T Consensus       234 l~~s~gslq~~~e~~lknpGv~gvr-IRpD---~K-IlATAGWD~RiRVyswrt-l~pLAVLkyHsagvn~vAfspd~~l  307 (323)
T KOG0322|consen  234 LNHSTGSLQIRKEITLKNPGVSGVR-IRPD---GK-ILATAGWDHRIRVYSWRT-LNPLAVLKYHSAGVNAVAFSPDCEL  307 (323)
T ss_pred             eccccCcccccceEEecCCCccceE-EccC---Cc-EEeecccCCcEEEEEecc-CCchhhhhhhhcceeEEEeCCCCch
Confidence                             00112222 5555   55 899999999999999999 9999999999999999999999999


Q ss_pred             EEEecCCCcEEEEec
Q 021291          267 GISGGADQKIVLYNL  281 (314)
Q Consensus       267 l~s~s~dg~i~iw~~  281 (314)
                      +|++|.|+.|.+|++
T Consensus       308 mAaaskD~rISLWkL  322 (323)
T KOG0322|consen  308 MAAASKDARISLWKL  322 (323)
T ss_pred             hhhccCCceEEeeec
Confidence            999999999999986

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.94  E-value=4.9e-25  Score=160.72  Aligned_cols=258  Identities=15%  Similarity=0.152  Sum_probs=200.2

Q ss_pred             EEecCCCCceeEEEEcc---CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291           12 AVLRGHRASVTDVCFHQ---TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (314)
Q Consensus        12 ~~l~~h~~~v~~~~~~~---~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v   88 (314)
                      .+..||+.+|..++|+|   +|-+|++++.||.-.+-+-++|..+.++.+|.++  |++...+.  +..+-++++.|-+-
T Consensus         8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkga--vw~~~l~~--na~~aasaaadfta   83 (334)
T KOG0278|consen    8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGA--VWSATLNK--NATRAASAAADFTA   83 (334)
T ss_pred             eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcc--eeeeecCc--hhhhhhhhcccchh
Confidence            46789999999999997   8889999999999999999999999999999966  99999988  87888899999999


Q ss_pred             EEEeCCCCCCCCCCeeee-ecceeeEEEeeeeeccccccccCCCC---cceeeccCCceeeecCCCCCC----ceeccCC
Q 021291           89 KCWDIENGGLSSNPSLTI-KTNSYHFCKLSLVKEPYANAKQANEP---KDCYEREVGETVDTDSLCDSK----DDVPAEG  160 (314)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  160 (314)
                      ++||.-++..+.    .+ +.+-...+.|+-    .......++.   .++++++..+.....+.+|..    +-|....
T Consensus        84 kvw~a~tgdelh----sf~hkhivk~~af~~----ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD  155 (334)
T KOG0278|consen   84 KVWDAVTGDELH----SFEHKHIVKAVAFSQ----DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHED  155 (334)
T ss_pred             hhhhhhhhhhhh----hhhhhheeeeEEecc----cchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccC
Confidence            999999987533    22 223334444443    3333334443   445566666666777788877    7788777


Q ss_pred             CceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccC
Q 021291          161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (314)
Q Consensus       161 ~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~  240 (314)
                      +.+|  +++.|++||+||.+++..++++..             ...+.++- ++++   |+  +++-...+.|.+||..+
T Consensus       156 ~~iL--SSadd~tVRLWD~rTgt~v~sL~~-------------~s~VtSlE-vs~d---G~--ilTia~gssV~Fwdaks  214 (334)
T KOG0278|consen  156 KCIL--SSADDKTVRLWDHRTGTEVQSLEF-------------NSPVTSLE-VSQD---GR--ILTIAYGSSVKFWDAKS  214 (334)
T ss_pred             ceEE--eeccCCceEEEEeccCcEEEEEec-------------CCCCccee-eccC---CC--EEEEecCceeEEecccc
Confidence            6665  447799999999999999999874             44677776 8887   65  44444567899999998


Q ss_pred             CCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe--------eeeeeecCCCceece
Q 021291          241 PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF--------GIGFVCDQEGNKFGT  304 (314)
Q Consensus       241 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~--------~~~~~~~~~~~~~~~  304 (314)
                       -.+++.++. .-.|.+...+|+...++.|+.|..++.||+.++..+-.        ...++++|+|..++.
T Consensus       215 -f~~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAs  284 (334)
T KOG0278|consen  215 -FGLLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYAS  284 (334)
T ss_pred             -ccceeeccC-ccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeec
Confidence             666666653 56788999999999999999999999999999988764        233567788866553

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=3.6e-26  Score=190.20  Aligned_cols=243  Identities=19%  Similarity=0.273  Sum_probs=196.0

Q ss_pred             eeEEEEcc-CCCEEEEecCCCeEEEEeCCC---CeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCC
Q 021291           21 VTDVCFHQ-TKPILFAGTTGGELRIWDTVQ---HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG   96 (314)
Q Consensus        21 v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~   96 (314)
                      +..++|+. +.++|||++..|.|.+||+..   .+.+..+..|+..  |.++.|++. ...+|++||.||+|++||++..
T Consensus        90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs--~~~ldfh~t-ep~iliSGSQDg~vK~~DlR~~  166 (839)
T KOG0269|consen   90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERS--ANKLDFHST-EPNILISGSQDGTVKCWDLRSK  166 (839)
T ss_pred             hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccc--eeeeeeccC-CccEEEecCCCceEEEEeeecc
Confidence            45577876 678999999999999999987   5666778888855  999999986 5589999999999999999987


Q ss_pred             CCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCceEEEeecCcC
Q 021291           97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLS  172 (314)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~  172 (314)
                      +...  .+...........|++..........+++....|+++........+..|.+    +.|+|++. ++| +|+.|+
T Consensus       167 ~S~~--t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~-~lA-TGGRDK  242 (839)
T KOG0269|consen  167 KSKS--TFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNRE-WLA-TGGRDK  242 (839)
T ss_pred             cccc--cccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCc-eee-ecCCCc
Confidence            7644  444556667777788887777778888999999999999999999999999    88999654 444 788999


Q ss_pred             eEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEee--cCCcEEEEEccCCCCceEeeec
Q 021291          173 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY--EDGSILVWDIRNPGIPLTAMKV  250 (314)
Q Consensus       173 ~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~--~dg~i~vwd~~~~~~~~~~~~~  250 (314)
                      .|+|||+.+.+.......           ....++..+. |.|..+   ..|++++  .|-.|+|||++.+--|..++..
T Consensus       243 ~vkiWd~t~~~~~~~~tI-----------nTiapv~rVk-WRP~~~---~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~e  307 (839)
T KOG0269|consen  243 MVKIWDMTDSRAKPKHTI-----------NTIAPVGRVK-WRPARS---YHLATCSMVVDTSVHVWDVRRPYIPYATFLE  307 (839)
T ss_pred             cEEEEeccCCCccceeEE-----------eecceeeeee-eccCcc---chhhhhhccccceEEEEeeccccccceeeec
Confidence            999999986654322221           1244677787 999854   3677765  4678999999988899999999


Q ss_pred             CCcceEEEEE-eCCCCeEEEecCCCcEEEEecCCCe
Q 021291          251 HLEPVLCLSI-DESCNGGISGGADQKIVLYNLDHST  285 (314)
Q Consensus       251 h~~~v~~~~~-~~~~~~l~s~s~dg~i~iw~~~~~~  285 (314)
                      |...++.++| +.+...|.+++.||.|..-.++...
T Consensus       308 H~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat  343 (839)
T KOG0269|consen  308 HTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT  343 (839)
T ss_pred             cCccccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence            9999999999 5566689999999999887666554

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=2.2e-24  Score=170.88  Aligned_cols=207  Identities=19%  Similarity=0.274  Sum_probs=161.6

Q ss_pred             ceEEecCCCCceeEEEEcc-CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291           10 PVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (314)
Q Consensus        10 ~~~~l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v   88 (314)
                      .++.+++|+.+|..+.|+| ++..|++|+.|+.+++||+.+......+.+|+  +.|.|.+|+|. ++..++|||.||+|
T Consensus       102 iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~ht--DYVR~g~~~~~-~~hivvtGsYDg~v  178 (487)
T KOG0310|consen  102 ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHT--DYVRCGDISPA-NDHIVVTGSYDGKV  178 (487)
T ss_pred             HHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCc--ceeEeeccccC-CCeEEEecCCCceE
Confidence            4667889999999999999 66788999999999999999988777888998  55999999995 34689999999999


Q ss_pred             EEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEee
Q 021291           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG  168 (314)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  168 (314)
                      ++||++...   .++.++........                                       +.+-|.|. +++.+|
T Consensus       179 rl~DtR~~~---~~v~elnhg~pVe~---------------------------------------vl~lpsgs-~iasAg  215 (487)
T KOG0310|consen  179 RLWDTRSLT---SRVVELNHGCPVES---------------------------------------VLALPSGS-LIASAG  215 (487)
T ss_pred             EEEEeccCC---ceeEEecCCCceee---------------------------------------EEEcCCCC-EEEEcC
Confidence            999999864   12444443322221                                       33556665 444455


Q ss_pred             cCcCeEEEEecCCCcee-eeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEe
Q 021291          169 EQLSEVEIWDLNTAERC-TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA  247 (314)
Q Consensus       169 ~~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~  247 (314)
                      +  ..|++||+-+|... ..+.        .|    .-.++|+. +..+   +. .|++|+.|+.|++||+.+ .+.+..
T Consensus       216 G--n~vkVWDl~~G~qll~~~~--------~H----~KtVTcL~-l~s~---~~-rLlS~sLD~~VKVfd~t~-~Kvv~s  275 (487)
T KOG0310|consen  216 G--NSVKVWDLTTGGQLLTSMF--------NH----NKTVTCLR-LASD---ST-RLLSGSLDRHVKVFDTTN-YKVVHS  275 (487)
T ss_pred             C--CeEEEEEecCCceehhhhh--------cc----cceEEEEE-eecC---Cc-eEeecccccceEEEEccc-eEEEEe
Confidence            4  78999999965543 3333        35    44788887 8776   34 899999999999999877 777777


Q ss_pred             eecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCC
Q 021291          248 MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH  283 (314)
Q Consensus       248 ~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~  283 (314)
                      +. ..++|.+++.+|+++.++.|-.||.+.+=+...
T Consensus       276 ~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~  310 (487)
T KOG0310|consen  276 WK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREV  310 (487)
T ss_pred             ee-cccceeeEEecCCCceEEEecccceeeeehhhc
Confidence            76 488999999999999999999999888764433

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=2.7e-24  Score=156.26  Aligned_cols=233  Identities=20%  Similarity=0.232  Sum_probs=164.4

Q ss_pred             CCceEEecCCCCceeEEEEcc--CCCEEEEecCCCeEEEEeCCCCeE--EEEEeccCCcccEEEEEEcccCCCCeEEEee
Q 021291            8 PDPVAVLRGHRASVTDVCFHQ--TKPILFAGTTGGELRIWDTVQHRT--VSSSWVHSAAHGIVSVATGPSIGLNKVISQG   83 (314)
Q Consensus         8 ~~~~~~l~~h~~~v~~~~~~~--~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (314)
                      .+++.+|.||.++|..++|..  .|.+||++++||.|.||.-++++-  ......|.  ..|.+++|.|..-|-.|++++
T Consensus        46 s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~--~SVNsV~wapheygl~Lacas  123 (299)
T KOG1332|consen   46 SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHS--ASVNSVAWAPHEYGLLLACAS  123 (299)
T ss_pred             ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhc--ccceeecccccccceEEEEee
Confidence            478999999999999999986  899999999999999999887753  34455676  559999999976677899999


Q ss_pred             cCCeEEEEeCCCC-CCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCC-C
Q 021291           84 RDGTVKCWDIENG-GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEG-P  161 (314)
Q Consensus        84 ~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  161 (314)
                      .||.|.|.+.++. ....+.+...+........+.+...+-..                            +.-.|.. -
T Consensus       124 SDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~----------------------------~~~~~~~~~  175 (299)
T KOG1332|consen  124 SDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL----------------------------VDQGPAAKV  175 (299)
T ss_pred             CCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc----------------------------cccCccccc
Confidence            9999999998765 22221122333333333333322111000                            0000111 1


Q ss_pred             ceEEEeecCcCeEEEEecCCCc--eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEcc
Q 021291          162 KYMAVAGEQLSEVEIWDLNTAE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR  239 (314)
Q Consensus       162 ~~~~~~g~~d~~i~vwd~~~~~--~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~  239 (314)
                      +-|+ +|+.|..|+||+..+++  ...++.        +|.+    .+..++ |.|.-.-.+.+|+++++||++.||..+
T Consensus       176 krlv-SgGcDn~VkiW~~~~~~w~~e~~l~--------~H~d----wVRDVA-waP~~gl~~s~iAS~SqDg~viIwt~~  241 (299)
T KOG1332|consen  176 KRLV-SGGCDNLVKIWKFDSDSWKLERTLE--------GHKD----WVRDVA-WAPSVGLPKSTIASCSQDGTVIIWTKD  241 (299)
T ss_pred             ceee-ccCCccceeeeecCCcchhhhhhhh--------hcch----hhhhhh-hccccCCCceeeEEecCCCcEEEEEec
Confidence            2244 67779999999988753  223345        7755    666666 988754455689999999999999887


Q ss_pred             CCCCc--eEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCC
Q 021291          240 NPGIP--LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS  284 (314)
Q Consensus       240 ~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~  284 (314)
                      ....+  ...++.....+..+.|+..|+.|+.++.|+.|.+|.-+..
T Consensus       242 ~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~  288 (299)
T KOG1332|consen  242 EEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVD  288 (299)
T ss_pred             CccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCC
Confidence            42222  2334456788999999999999999999999999976544

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.93  E-value=8.8e-25  Score=180.93  Aligned_cols=248  Identities=16%  Similarity=0.171  Sum_probs=179.3

Q ss_pred             CCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEccc-CCCCeEEEeecCCeEEEEeCC
Q 021291           16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS-IGLNKVISQGRDGTVKCWDIE   94 (314)
Q Consensus        16 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~l~s~~~dg~v~iwd~~   94 (314)
                      +..-.+.+++.+|+|++||+|..-|+++||++.+-+....+..|+.+  |.|+.|+.. ...++|++++.|.-|+|||+.
T Consensus       457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesE--ilcLeyS~p~~~~kLLASasrdRlIHV~Dv~  534 (1080)
T KOG1408|consen  457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESE--ILCLEYSFPVLTNKLLASASRDRLIHVYDVK  534 (1080)
T ss_pred             CcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccce--eEEEeecCchhhhHhhhhccCCceEEEEecc
Confidence            45567999999999999999999999999999999999999999955  999999853 134689999999999999997


Q ss_pred             CCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCc-ceeeccCCceeeecCC------CCCC---ceeccCCCceE
Q 021291           95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPK-DCYEREVGETVDTDSL------CDSK---DDVPAEGPKYM  164 (314)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------~~~~---~~~~~~~~~~~  164 (314)
                      ..-...+ .+..+........|...+.... ....+... ..++......-...+.      .+..   +++.|..++++
T Consensus       535 rny~l~q-tld~HSssITsvKFa~~gln~~-MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~  612 (1080)
T KOG1408|consen  535 RNYDLVQ-TLDGHSSSITSVKFACNGLNRK-MISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVV  612 (1080)
T ss_pred             cccchhh-hhcccccceeEEEEeecCCceE-EEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEE
Confidence            6543221 2222233333333333221111 11111111 1111111100001111      1111   77778776544


Q ss_pred             EEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCc
Q 021291          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (314)
Q Consensus       165 ~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~  244 (314)
                        ++..|+.|+|||+.+++..+.|+.       .| + ..+....+. ..|.   |. |+++.+.|+++.++|.-+ +++
T Consensus       613 --t~cQDrnirif~i~sgKq~k~FKg-------s~-~-~eG~lIKv~-lDPS---gi-Y~atScsdktl~~~Df~s-gEc  675 (1080)
T KOG1408|consen  613 --TVCQDRNIRIFDIESGKQVKSFKG-------SR-D-HEGDLIKVI-LDPS---GI-YLATSCSDKTLCFVDFVS-GEC  675 (1080)
T ss_pred             --EEecccceEEEeccccceeeeecc-------cc-c-CCCceEEEE-ECCC---cc-EEEEeecCCceEEEEecc-chh
Confidence              567799999999999999999983       22 1 245666776 8887   55 999999999999999998 999


Q ss_pred             eEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCC
Q 021291          245 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS  284 (314)
Q Consensus       245 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~  284 (314)
                      +..+.||.+.|+.+.|.+|.+.|++.+.||.|.||.+...
T Consensus       676 vA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~  715 (1080)
T KOG1408|consen  676 VAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLT  715 (1080)
T ss_pred             hhhhcCcchheeeeeecccchhheeecCCceEEEEECchh
Confidence            9999999999999999999999999999999999998753

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.93  E-value=1.3e-23  Score=154.16  Aligned_cols=230  Identities=11%  Similarity=0.143  Sum_probs=173.7

Q ss_pred             EecCCCCceeEEEEcc-CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEE
Q 021291           13 VLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW   91 (314)
Q Consensus        13 ~l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iw   91 (314)
                      ..+||.+.|-.++|+| ...+|++++.|.+|++||++.+++...+....+.   .-+.|+|  ++++++.++.|..|...
T Consensus        59 ~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~en---i~i~wsp--~g~~~~~~~kdD~it~i  133 (313)
T KOG1407|consen   59 VYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGEN---INITWSP--DGEYIAVGNKDDRITFI  133 (313)
T ss_pred             cccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcc---eEEEEcC--CCCEEEEecCcccEEEE
Confidence            4578999999999999 6779999999999999999999999988766543   5789999  99999999999999999


Q ss_pred             eCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCC-CCcceeeccCCceeeecCCCCCC----ceeccCCCceEEE
Q 021291           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN-EPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAV  166 (314)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~  166 (314)
                      |.++.+......+..   ....+.+.  ..........| +.+.+......+ ....+..|..    +.|+|+|+++.  
T Consensus       134 d~r~~~~~~~~~~~~---e~ne~~w~--~~nd~Fflt~GlG~v~ILsypsLk-pv~si~AH~snCicI~f~p~GryfA--  205 (313)
T KOG1407|consen  134 DARTYKIVNEEQFKF---EVNEISWN--NSNDLFFLTNGLGCVEILSYPSLK-PVQSIKAHPSNCICIEFDPDGRYFA--  205 (313)
T ss_pred             Eecccceeehhcccc---eeeeeeec--CCCCEEEEecCCceEEEEeccccc-cccccccCCcceEEEEECCCCceEe--
Confidence            999877654222211   12222232  12222222222 344444443333 3334556666    88999998764  


Q ss_pred             eecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceE
Q 021291          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (314)
Q Consensus       167 ~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~  246 (314)
                      +|+.|-.+.+||+...-+.+.+.        .+    .-++..+. |+.+   |+ +||+|++|..|-|=++.+ +..+.
T Consensus       206 ~GsADAlvSLWD~~ELiC~R~is--------Rl----dwpVRTlS-FS~d---g~-~lASaSEDh~IDIA~vet-Gd~~~  267 (313)
T KOG1407|consen  206 TGSADALVSLWDVDELICERCIS--------RL----DWPVRTLS-FSHD---GR-MLASASEDHFIDIAEVET-GDRVW  267 (313)
T ss_pred             eccccceeeccChhHhhhheeec--------cc----cCceEEEE-eccC---cc-eeeccCccceEEeEeccc-CCeEE
Confidence            68889999999999988888887        34    33667776 9988   66 999999999999999998 77787


Q ss_pred             eeecCCcceEEEEEeCCCCeEEEecCCC
Q 021291          247 AMKVHLEPVLCLSIDESCNGGISGGADQ  274 (314)
Q Consensus       247 ~~~~h~~~v~~~~~~~~~~~l~s~s~dg  274 (314)
                      +++ +.++...|+|+|...+||-++.|.
T Consensus       268 eI~-~~~~t~tVAWHPk~~LLAyA~ddk  294 (313)
T KOG1407|consen  268 EIP-CEGPTFTVAWHPKRPLLAYACDDK  294 (313)
T ss_pred             Eee-ccCCceeEEecCCCceeeEEecCC
Confidence            776 688999999999999998777653

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.93  E-value=1.7e-22  Score=163.88  Aligned_cols=262  Identities=11%  Similarity=0.050  Sum_probs=170.7

Q ss_pred             CCCceEEecCCCCceeEEEEccCCCEE-EEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEE-eec
Q 021291            7 PPDPVAVLRGHRASVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS-QGR   84 (314)
Q Consensus         7 ~~~~~~~l~~h~~~v~~~~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s-~~~   84 (314)
                      .+++++.+.+|.. +.+++|+|+++.+ ++++.++.|++||..+++....+..+.   .+..++|+|  +++.+++ ++.
T Consensus        20 t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~~~--~g~~l~~~~~~   93 (300)
T TIGR03866        20 TLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP---DPELFALHP--NGKILYIANED   93 (300)
T ss_pred             CCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC---CccEEEECC--CCCEEEEEcCC
Confidence            3567778876654 6789999999876 567889999999999988877766543   256789999  8887754 456


Q ss_pred             CCeEEEEeCCCCCCCCCCeeeeec-ceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC--ceeccCCC
Q 021291           85 DGTVKCWDIENGGLSSNPSLTIKT-NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGP  161 (314)
Q Consensus        85 dg~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  161 (314)
                      |+.|++||+.+.+.+.    .+.. .......+++.+...............++.............+..  ++|+|+++
T Consensus        94 ~~~l~~~d~~~~~~~~----~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~  169 (300)
T TIGR03866        94 DNLVTVIDIETRKVLA----EIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGK  169 (300)
T ss_pred             CCeEEEEECCCCeEEe----EeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCC
Confidence            8999999998865432    2221 112223333333222222222222334455444333222222222  88999998


Q ss_pred             ceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCC
Q 021291          162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP  241 (314)
Q Consensus       162 ~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~  241 (314)
                      .+++ ++..++.|++||+++++.+..+.....   ..+..  ......+. |+|+   ++..+++...++.|.+||.++ 
T Consensus       170 ~l~~-~~~~~~~v~i~d~~~~~~~~~~~~~~~---~~~~~--~~~~~~i~-~s~d---g~~~~~~~~~~~~i~v~d~~~-  238 (300)
T TIGR03866       170 ELWV-SSEIGGTVSVIDVATRKVIKKITFEIP---GVHPE--AVQPVGIK-LTKD---GKTAFVALGPANRVAVVDAKT-  238 (300)
T ss_pred             EEEE-EcCCCCEEEEEEcCcceeeeeeeeccc---ccccc--cCCccceE-ECCC---CCEEEEEcCCCCeEEEEECCC-
Confidence            6654 555689999999999887766542100   00101  11233455 9988   553445555677899999987 


Q ss_pred             CCceEeeecCCcceEEEEEeCCCCeEEEe-cCCCcEEEEecCCCeeeEee
Q 021291          242 GIPLTAMKVHLEPVLCLSIDESCNGGISG-GADQKIVLYNLDHSTYVLFG  290 (314)
Q Consensus       242 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-s~dg~i~iw~~~~~~~~~~~  290 (314)
                      ++.+..+. +...+.+++|+|++++|+++ +.+|.|++||+++++.+..+
T Consensus       239 ~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~  287 (300)
T TIGR03866       239 YEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSI  287 (300)
T ss_pred             CcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence            66655543 45679999999999998876 56899999999999877654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=4.1e-23  Score=154.95  Aligned_cols=260  Identities=16%  Similarity=0.189  Sum_probs=180.9

Q ss_pred             CCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCC
Q 021291           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG   96 (314)
Q Consensus        17 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~   96 (314)
                      ..+.|..+.|+|.++.|+.++.||.+++||+........++ |.  .++.+++|.+  + ..+++|+.||.|+.+|++++
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~--~plL~c~F~d--~-~~~~~G~~dg~vr~~Dln~~   85 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HG--APLLDCAFAD--E-STIVTGGLDGQVRRYDLNTG   85 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cC--CceeeeeccC--C-ceEEEeccCceEEEEEecCC
Confidence            46789999999988888889999999999998876655554 55  5599999998  5 88999999999999999988


Q ss_pred             CCCCCCeeeeecc-eeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC-ceeccCCCceEEEeecCcCeE
Q 021291           97 GLSSNPSLTIKTN-SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-DDVPAEGPKYMAVAGEQLSEV  174 (314)
Q Consensus        97 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~d~~i  174 (314)
                      ...     .+..+ ....|..-...........-+....+|+.+...... .+..... .+.+-.++.+++  |..|..+
T Consensus        86 ~~~-----~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~-~~d~~kkVy~~~v~g~~LvV--g~~~r~v  157 (323)
T KOG1036|consen   86 NED-----QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVG-TFDQGKKVYCMDVSGNRLVV--GTSDRKV  157 (323)
T ss_pred             cce-----eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccc-ccccCceEEEEeccCCEEEE--eecCceE
Confidence            632     22222 222222111222233334444566677766422111 1111112 566667776664  5558999


Q ss_pred             EEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCC---CCceEeeecC
Q 021291          175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP---GIPLTAMKVH  251 (314)
Q Consensus       175 ~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~---~~~~~~~~~h  251 (314)
                      .+||+++.....+..          ....+-.+.+++ +-|+   +. -+++++-||.|.+=.++..   ......++.|
T Consensus       158 ~iyDLRn~~~~~q~r----------eS~lkyqtR~v~-~~pn---~e-Gy~~sSieGRVavE~~d~s~~~~skkyaFkCH  222 (323)
T KOG1036|consen  158 LIYDLRNLDEPFQRR----------ESSLKYQTRCVA-LVPN---GE-GYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCH  222 (323)
T ss_pred             EEEEcccccchhhhc----------cccceeEEEEEE-EecC---CC-ceEEEeecceEEEEccCCchHHhhhceeEEee
Confidence            999999877554322          112344677777 7775   33 5888999999988666641   1344556677


Q ss_pred             Cc---------ceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe-------eeeeeecCCCceecee
Q 021291          252 LE---------PVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF-------GIGFVCDQEGNKFGTT  305 (314)
Q Consensus       252 ~~---------~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~-------~~~~~~~~~~~~~~~~  305 (314)
                      ..         +|++|+|+|-...|+||+.||.|.+||+.+.+.+..       +..++++.+|..++..
T Consensus       223 r~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia  292 (323)
T KOG1036|consen  223 RLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIA  292 (323)
T ss_pred             ecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEE
Confidence            43         899999999989999999999999999999988765       3446788888887764

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.93  E-value=2.7e-24  Score=171.63  Aligned_cols=234  Identities=14%  Similarity=0.187  Sum_probs=168.0

Q ss_pred             CCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEE------------EEeccCCcccEEEEEEcccCCCCeEEEeecC
Q 021291           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVS------------SSWVHSAAHGIVSVATGPSIGLNKVISQGRD   85 (314)
Q Consensus        18 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~------------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (314)
                      ...|++++|++.|..|++.+.....+|+|-...+...            ..++|.  ..++|.+|+|. +...|++++.|
T Consensus       214 ~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHi--a~lt~g~whP~-~k~~FlT~s~D  290 (641)
T KOG0772|consen  214 THQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHI--AELTCGCWHPD-NKEEFLTCSYD  290 (641)
T ss_pred             ccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCce--eeeeccccccC-cccceEEecCC
Confidence            3468999999999988888888899999965433322            224676  55999999996 34789999999


Q ss_pred             CeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEE
Q 021291           86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA  165 (314)
Q Consensus        86 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (314)
                      |+++|||++..+...+ ++.-....  .....+.                                 ..+|+++|+. ++
T Consensus       291 gtlRiWdv~~~k~q~q-Vik~k~~~--g~Rv~~t---------------------------------sC~~nrdg~~-iA  333 (641)
T KOG0772|consen  291 GTLRIWDVNNTKSQLQ-VIKTKPAG--GKRVPVT---------------------------------SCAWNRDGKL-IA  333 (641)
T ss_pred             CcEEEEecCCchhhee-EEeeccCC--CcccCce---------------------------------eeecCCCcch-hh
Confidence            9999999987653221 11111110  0000000                                 0569999985 33


Q ss_pred             EeecCcCeEEEEecCCCce--eeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCC
Q 021291          166 VAGEQLSEVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI  243 (314)
Q Consensus       166 ~~g~~d~~i~vwd~~~~~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~  243 (314)
                       +|..||.|.+|+......  ...+..       +|..  ...++++. |+++   |+ +|++-+.|+++++||+++..+
T Consensus       334 -agc~DGSIQ~W~~~~~~v~p~~~vk~-------AH~~--g~~Itsi~-FS~d---g~-~LlSRg~D~tLKvWDLrq~kk  398 (641)
T KOG0772|consen  334 -AGCLDGSIQIWDKGSRTVRPVMKVKD-------AHLP--GQDITSIS-FSYD---GN-YLLSRGFDDTLKVWDLRQFKK  398 (641)
T ss_pred             -hcccCCceeeeecCCcccccceEeee-------ccCC--CCceeEEE-eccc---cc-hhhhccCCCceeeeecccccc
Confidence             577799999999865432  222222       5643  23688887 9998   55 899999999999999999888


Q ss_pred             ceEeeecCCc--ceEEEEEeCCCCeEEEecC------CCcEEEEecCCCeeeEeeeeeeecCCCceeceeecccc
Q 021291          244 PLTAMKVHLE--PVLCLSIDESCNGGISGGA------DQKIVLYNLDHSTYVLFGIGFVCDQEGNKFGTTWHIRH  310 (314)
Q Consensus       244 ~~~~~~~h~~--~v~~~~~~~~~~~l~s~s~------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  310 (314)
                      ++....+-..  +-+.++|+|+.++|+||..      .|.+.+||..+-..++.+--    +........||++.
T Consensus       399 pL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i----~~aSvv~~~WhpkL  469 (641)
T KOG0772|consen  399 PLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI----STASVVRCLWHPKL  469 (641)
T ss_pred             chhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecC----CCceEEEEeecchh
Confidence            8887765443  5678999999999999864      57899999999888876421    35666777888853

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.93  E-value=1.2e-23  Score=170.72  Aligned_cols=284  Identities=19%  Similarity=0.213  Sum_probs=191.9

Q ss_pred             CCCCCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEee
Q 021291            4 RPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG   83 (314)
Q Consensus         4 ~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (314)
                      +|.|..+...++||++.|.|+...|.|.+|++|+.||+|+||.+.+|+|++++...   +.|.|++|+|..+...|+.+-
T Consensus       386 rPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d---~~I~~vaw~P~~~~~vLAvA~  462 (733)
T KOG0650|consen  386 RPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD---SEIRSVAWNPLSDLCVLAVAV  462 (733)
T ss_pred             CCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec---ceeEEEEecCCCCceeEEEEe
Confidence            68888899999999999999999999999999999999999999999999998765   459999999943323444444


Q ss_pred             cCCeEEEEeCCCCCCCC-----CCeeeee---c---------------ceeeEE------------Eeeeeecccccccc
Q 021291           84 RDGTVKCWDIENGGLSS-----NPSLTIK---T---------------NSYHFC------------KLSLVKEPYANAKQ  128 (314)
Q Consensus        84 ~dg~v~iwd~~~~~~~~-----~~~~~~~---~---------------~~~~~~------------~~~~~~~~~~~~~~  128 (314)
                       +..+.|-+..-+..+.     .+.....   .               .....|            .+.-.+........
T Consensus       463 -~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~  541 (733)
T KOG0650|consen  463 -GECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMP  541 (733)
T ss_pred             -cCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEecc
Confidence             4446666654331110     0000000   0               000001            11111111122222


Q ss_pred             CCCCcc--eeeccCCcee--eecCCCCCC-ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCC
Q 021291          129 ANEPKD--CYEREVGETV--DTDSLCDSK-DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKG  203 (314)
Q Consensus       129 ~~~~~~--~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~  203 (314)
                      .++...  +..+......  .....++.. +.|+|...++++++   ...|++||+...+.+..+..            .
T Consensus       542 ~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT---q~~vRiYdL~kqelvKkL~t------------g  606 (733)
T KOG0650|consen  542 DSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT---QRSVRIYDLSKQELVKKLLT------------G  606 (733)
T ss_pred             CCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe---ccceEEEehhHHHHHHHHhc------------C
Confidence            222111  1222222111  111222222 88999998888654   37899999998777766652            1


Q ss_pred             CceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecC-
Q 021291          204 RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD-  282 (314)
Q Consensus       204 ~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~-  282 (314)
                      .-.+..++ .+|.   |. -|+.|+.|+.+..+|+.-..++.+.+.-|...|++|+|++...++++|+.||.+.|+--. 
T Consensus       607 ~kwiS~ms-ihp~---GD-nli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~V  681 (733)
T KOG0650|consen  607 SKWISSMS-IHPN---GD-NLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMV  681 (733)
T ss_pred             Ceeeeeee-ecCC---CC-eEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeee
Confidence            22456665 8886   44 799999999999999997678999999999999999999999999999999999998422 


Q ss_pred             -----CCee---eEeeeeeeecCCCceeceeeccccc
Q 021291          283 -----HSTY---VLFGIGFVCDQEGNKFGTTWHIRHL  311 (314)
Q Consensus       283 -----~~~~---~~~~~~~~~~~~~~~~~~~w~~~~~  311 (314)
                           ..-.   +..+.++....+..++.+.||+++.
T Consensus       682 Y~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qp  718 (733)
T KOG0650|consen  682 YNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQP  718 (733)
T ss_pred             ehhhhcCCceEeeeeccCceeecccceEeecccCCCc
Confidence                 2222   2346677777888899999999873

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=8.6e-25  Score=169.97  Aligned_cols=211  Identities=17%  Similarity=0.249  Sum_probs=149.4

Q ss_pred             CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v   88 (314)
                      +..+++.||..+|.-+.||||.++|++|+.|-.+.+||+.+|.+...+... ....+.+++|.|  ||..+++|+.|+++
T Consensus       260 kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~-~~~S~~sc~W~p--Dg~~~V~Gs~dr~i  336 (519)
T KOG0293|consen  260 KLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSG-LGFSVSSCAWCP--DGFRFVTGSPDRTI  336 (519)
T ss_pred             eeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccC-cCCCcceeEEcc--CCceeEecCCCCcE
Confidence            568899999999999999999999999999999999999999988777533 224599999999  99999999999999


Q ss_pred             EEEeCCCCCCCC-----CC-eeeeec--cee-----------------------------eEEEeeeeeccc-cccccCC
Q 021291           89 KCWDIENGGLSS-----NP-SLTIKT--NSY-----------------------------HFCKLSLVKEPY-ANAKQAN  130 (314)
Q Consensus        89 ~iwd~~~~~~~~-----~~-~~~~~~--~~~-----------------------------~~~~~~~~~~~~-~~~~~~~  130 (314)
                      ..||+.......     .| +..+..  ...                             ....+++..... .......
T Consensus       337 ~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~  416 (519)
T KOG0293|consen  337 IMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQD  416 (519)
T ss_pred             EEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEccc
Confidence            999987653211     00 111110  000                             000111111111 1111222


Q ss_pred             CCcceeeccCCceeeecCCCCCC------ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCC
Q 021291          131 EPKDCYEREVGETVDTDSLCDSK------DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGR  204 (314)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~  204 (314)
                      .....|++. ...+...+.+|..      -+|.-..+. ++++|++|+.|+||+..+++++..+.        ||.    
T Consensus       417 qei~LWDl~-e~~lv~kY~Ghkq~~fiIrSCFgg~~~~-fiaSGSED~kvyIWhr~sgkll~~Ls--------GHs----  482 (519)
T KOG0293|consen  417 QEIHLWDLE-ENKLVRKYFGHKQGHFIIRSCFGGGNDK-FIASGSEDSKVYIWHRISGKLLAVLS--------GHS----  482 (519)
T ss_pred             CeeEEeecc-hhhHHHHhhcccccceEEEeccCCCCcc-eEEecCCCceEEEEEccCCceeEeec--------CCc----
Confidence            344556666 3344455666655      445444434 44589999999999999999999999        884    


Q ss_pred             ceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccC
Q 021291          205 GMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (314)
Q Consensus       205 ~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~  240 (314)
                      ..+.+++ |+|..+.   .+|+++.||+|+||-...
T Consensus       483 ~~vNcVs-wNP~~p~---m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  483 KTVNCVS-WNPADPE---MFASASDDGTIRIWGPSD  514 (519)
T ss_pred             ceeeEEe-cCCCCHH---HhhccCCCCeEEEecCCc
Confidence            4788887 9998552   899999999999998764

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.93  E-value=8.4e-24  Score=162.65  Aligned_cols=210  Identities=15%  Similarity=0.276  Sum_probs=157.9

Q ss_pred             EecCCCCceeEEEEccCC--CEEEEecCCCeEEEEeCCC----------------CeEEEEEeccCCcccEEEEEEcccC
Q 021291           13 VLRGHRASVTDVCFHQTK--PILFAGTTGGELRIWDTVQ----------------HRTVSSSWVHSAAHGIVSVATGPSI   74 (314)
Q Consensus        13 ~l~~h~~~v~~~~~~~~~--~~l~s~~~dg~v~iwd~~~----------------~~~~~~~~~~~~~~~v~~~~~~~~~   74 (314)
                      ..-+|.+.|+.+.-++-+  .+.++=+..|.|.||++..                .+.+.++.+|...  =+.|+|||. 
T Consensus       146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~E--Gy~LdWSp~-  222 (440)
T KOG0302|consen  146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGE--GYGLDWSPI-  222 (440)
T ss_pred             cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCcc--ceeeecccc-
Confidence            344688888888888744  4667778899999999753                2456778888855  789999995 


Q ss_pred             CCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC-
Q 021291           75 GLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-  153 (314)
Q Consensus        75 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  153 (314)
                      ....|++|..-+.|++|...++....      ..                                     ..+.+|.. 
T Consensus       223 ~~g~LlsGDc~~~I~lw~~~~g~W~v------d~-------------------------------------~Pf~gH~~S  259 (440)
T KOG0302|consen  223 KTGRLLSGDCVKGIHLWEPSTGSWKV------DQ-------------------------------------RPFTGHTKS  259 (440)
T ss_pred             cccccccCccccceEeeeeccCceee------cC-------------------------------------ccccccccc
Confidence            33668899888999999998875321      11                                     01222333 


Q ss_pred             ---ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecC
Q 021291          154 ---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED  230 (314)
Q Consensus       154 ---~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~d  230 (314)
                         ++|||..+.+++ +++.||+|+|||+|.+.....+...      +|    .+-+..+. |+...+    +|++|+.|
T Consensus       260 VEDLqWSptE~~vfa-ScS~DgsIrIWDiRs~~~~~~~~~k------Ah----~sDVNVIS-Wnr~~~----lLasG~Dd  323 (440)
T KOG0302|consen  260 VEDLQWSPTEDGVFA-SCSCDGSIRIWDIRSGPKKAAVSTK------AH----NSDVNVIS-WNRREP----LLASGGDD  323 (440)
T ss_pred             hhhhccCCccCceEE-eeecCceEEEEEecCCCccceeEee------cc----CCceeeEE-ccCCcc----eeeecCCC
Confidence               789999988877 6777999999999988422221111      56    33566665 987744    89999999


Q ss_pred             CcEEEEEccC--CCCceEeeecCCcceEEEEEeCCC-CeEEEecCCCcEEEEecCCC
Q 021291          231 GSILVWDIRN--PGIPLTAMKVHLEPVLCLSIDESC-NGGISGGADQKIVLYNLDHS  284 (314)
Q Consensus       231 g~i~vwd~~~--~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~i~iw~~~~~  284 (314)
                      |+++|||+|+  .++++..++-|..+|++|.|+|.. ..|+++|.|..|.+||+.-.
T Consensus       324 Gt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE  380 (440)
T KOG0302|consen  324 GTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVE  380 (440)
T ss_pred             ceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence            9999999985  357899999999999999998753 45788889999999998644

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=1.3e-24  Score=166.32  Aligned_cols=247  Identities=15%  Similarity=0.236  Sum_probs=190.5

Q ss_pred             CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v   88 (314)
                      +++++|++|.+.|..|++..  ..+++++.|.+|+.|.++- ..+.++.+.   ..+..+.-+.  .+..++|++.+  |
T Consensus       100 ~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg~---s~~~gIdh~~--~~~~FaTcGe~--i  169 (433)
T KOG0268|consen  100 ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILGK---SVYLGIDHHR--KNSVFATCGEQ--I  169 (433)
T ss_pred             hhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeecc---cccccccccc--ccccccccCce--e
Confidence            56789999999999999986  5789999999999999774 566666554   3367777766  66889999864  9


Q ss_pred             EEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC--ceeccCCCceEEE
Q 021291           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMAV  166 (314)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  166 (314)
                      .|||.+....+.  .++........+.+++................+++++....+......-..  ++|+|.+- .+ +
T Consensus       170 ~IWD~~R~~Pv~--smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeaf-nF-~  245 (433)
T KOG0268|consen  170 DIWDEQRDNPVS--SMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAF-NF-V  245 (433)
T ss_pred             eecccccCCccc--eeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCcccc-ce-e
Confidence            999997665544  456666677888888887777777777888888999888766665544444  99999553 33 3


Q ss_pred             eecCcCeEEEEecCCCce-eeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCce
Q 021291          167 AGEQLSEVEIWDLNTAER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL  245 (314)
Q Consensus       167 ~g~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~  245 (314)
                      ++++|..++.||++..+. +..+.        +|    .+.++.+. |+|.   |+ -+++|+.|.+|+||..+. +...
T Consensus       246 ~a~ED~nlY~~DmR~l~~p~~v~~--------dh----vsAV~dVd-fspt---G~-EfvsgsyDksIRIf~~~~-~~SR  307 (433)
T KOG0268|consen  246 AANEDHNLYTYDMRNLSRPLNVHK--------DH----VSAVMDVD-FSPT---GQ-EFVSGSYDKSIRIFPVNH-GHSR  307 (433)
T ss_pred             eccccccceehhhhhhcccchhhc--------cc----ceeEEEec-cCCC---cc-hhccccccceEEEeecCC-Ccch
Confidence            788899999999997654 33344        55    55899998 9998   55 799999999999999986 3322


Q ss_pred             Eeee-cCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeee
Q 021291          246 TAMK-VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYV  287 (314)
Q Consensus       246 ~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~  287 (314)
                      ..+. .--..|.++.|+-|.+++++||.|+.|++|.-...+++
T Consensus       308 diYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asekl  350 (433)
T KOG0268|consen  308 DIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKL  350 (433)
T ss_pred             hhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhc
Confidence            2221 22357999999999999999999999999987655543

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=2.9e-23  Score=156.33  Aligned_cols=260  Identities=15%  Similarity=0.120  Sum_probs=173.8

Q ss_pred             CCCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC
Q 021291            6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD   85 (314)
Q Consensus         6 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (314)
                      .|.+.-.+|.. .. -.|+.|++.|.+||+|..||.|.|||+.+...-+.+.+|..+  |.+++|++  +|++|+++|.|
T Consensus        13 ~PEel~~tld~-~~-a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~p--i~sl~WS~--dgr~LltsS~D   86 (405)
T KOG1273|consen   13 YPEELTHTLDN-PL-AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRP--ITSLCWSR--DGRKLLTSSRD   86 (405)
T ss_pred             ChHhhceeccC-Cc-cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccc--eeEEEecC--CCCEeeeecCC
Confidence            34455666653 22 789999999999999999999999999998888888999955  99999999  99999999999


Q ss_pred             CeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeec--CCCCCC-----ceecc
Q 021291           86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTD--SLCDSK-----DDVPA  158 (314)
Q Consensus        86 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----~~~~~  158 (314)
                      ..|.+||+..+.+..+  +.+. .+...+.+.+................+..+.........  -.+...     ..|.+
T Consensus        87 ~si~lwDl~~gs~l~r--irf~-spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr  163 (405)
T KOG1273|consen   87 WSIKLWDLLKGSPLKR--IRFD-SPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDR  163 (405)
T ss_pred             ceeEEEeccCCCceeE--EEcc-CccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccC
Confidence            9999999999986552  1221 122333333333222222222222223333221100000  011111     34778


Q ss_pred             CCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEc
Q 021291          159 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI  238 (314)
Q Consensus       159 ~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~  238 (314)
                      .|++++  +|...|.+.+||..+.+++..++..        +   ...+-.+. ++..   |+ .|+.-+.|..|+.|++
T Consensus       164 ~g~yIi--tGtsKGkllv~~a~t~e~vas~rit--------s---~~~IK~I~-~s~~---g~-~liiNtsDRvIR~ye~  225 (405)
T KOG1273|consen  164 RGKYII--TGTSKGKLLVYDAETLECVASFRIT--------S---VQAIKQII-VSRK---GR-FLIINTSDRVIRTYEI  225 (405)
T ss_pred             CCCEEE--EecCcceEEEEecchheeeeeeeec--------h---heeeeEEE-Eecc---Cc-EEEEecCCceEEEEeh
Confidence            888776  5777899999999999998888731        1   12444554 6665   66 8999999999999998


Q ss_pred             cCCC------C--ceEeeec--CCcceEEEEEeCCCCeEEEecC-CCcEEEEecCCCeeeEeeee
Q 021291          239 RNPG------I--PLTAMKV--HLEPVLCLSIDESCNGGISGGA-DQKIVLYNLDHSTYVLFGIG  292 (314)
Q Consensus       239 ~~~~------~--~~~~~~~--h~~~v~~~~~~~~~~~l~s~s~-dg~i~iw~~~~~~~~~~~~~  292 (314)
                      +...      .  +.+.++.  ....=.+++|+.+|.|++.++. ...++||.-..|..+....|
T Consensus       226 ~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG  290 (405)
T KOG1273|consen  226 SDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHG  290 (405)
T ss_pred             hhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecC
Confidence            7311      1  1122211  1223356788999999977764 45799999999988765433

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.92  E-value=2.8e-23  Score=179.23  Aligned_cols=234  Identities=17%  Similarity=0.202  Sum_probs=169.9

Q ss_pred             CCCCceeEEEEccCCCEEEEec--CCCeEEEEeCCC------------CeEEEEEeccCCcccEEEEEEcccCCCCeEEE
Q 021291           16 GHRASVTDVCFHQTKPILFAGT--TGGELRIWDTVQ------------HRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS   81 (314)
Q Consensus        16 ~h~~~v~~~~~~~~~~~l~s~~--~dg~v~iwd~~~------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s   81 (314)
                      .+...|.+++.+|||..+|||+  .||.++||+.+.            .+.+..+..|.+  .|.|+.|+|  ||.+||+
T Consensus        11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~--sv~CVR~S~--dG~~lAs   86 (942)
T KOG0973|consen   11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDG--SVNCVRFSP--DGSYLAS   86 (942)
T ss_pred             cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccC--ceeEEEECC--CCCeEee
Confidence            3456799999999999999999  899999998652            234556667774  499999999  9999999


Q ss_pred             eecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceec
Q 021291           82 QGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVP  157 (314)
Q Consensus        82 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  157 (314)
                      |++|+.|.||+.....  ....+.......                         +.+ .......+.+|..    ++|+
T Consensus        87 GSDD~~v~iW~~~~~~--~~~~fgs~g~~~-------------------------~vE-~wk~~~~l~~H~~DV~Dv~Ws  138 (942)
T KOG0973|consen   87 GSDDRLVMIWERAEIG--SGTVFGSTGGAK-------------------------NVE-SWKVVSILRGHDSDVLDVNWS  138 (942)
T ss_pred             ccCcceEEEeeecccC--Cccccccccccc-------------------------ccc-eeeEEEEEecCCCccceeccC
Confidence            9999999999987511  000111100000                         001 1122334455655    8999


Q ss_pred             cCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEE
Q 021291          158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD  237 (314)
Q Consensus       158 ~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd  237 (314)
                      |++.. + ++++.|++|.+||.++.+.+..+.        +|...+.    .+. |.|-   |+ +|++-+.|++|+||+
T Consensus       139 p~~~~-l-vS~s~DnsViiwn~~tF~~~~vl~--------~H~s~VK----Gvs-~DP~---Gk-y~ASqsdDrtikvwr  199 (942)
T KOG0973|consen  139 PDDSL-L-VSVSLDNSVIIWNAKTFELLKVLR--------GHQSLVK----GVS-WDPI---GK-YFASQSDDRTLKVWR  199 (942)
T ss_pred             CCccE-E-EEecccceEEEEccccceeeeeee--------ccccccc----ceE-ECCc---cC-eeeeecCCceEEEEE
Confidence            98863 3 378889999999999999999998        8865444    454 9998   66 999999999999999


Q ss_pred             ccCCCC---------------------------------------------------ceEeeecCCcceEEEEEeC----
Q 021291          238 IRNPGI---------------------------------------------------PLTAMKVHLEPVLCLSIDE----  262 (314)
Q Consensus       238 ~~~~~~---------------------------------------------------~~~~~~~h~~~v~~~~~~~----  262 (314)
                      +.+.+-                                                   .-..+-||..++.+++|+|    
T Consensus       200 t~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe  279 (942)
T KOG0973|consen  200 TSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFE  279 (942)
T ss_pred             cccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhc
Confidence            643100                                                   1123558999999999965    


Q ss_pred             --CC-----------CeEEEecCCCcEEEEecCCCeeeEe--------eeeeeecCCCc
Q 021291          263 --SC-----------NGGISGGADQKIVLYNLDHSTYVLF--------GIGFVCDQEGN  300 (314)
Q Consensus       263 --~~-----------~~l~s~s~dg~i~iw~~~~~~~~~~--------~~~~~~~~~~~  300 (314)
                        ..           ..+|+||.|++|.||.....+.++.        +..++.+|+|.
T Consensus       280 ~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~  338 (942)
T KOG0973|consen  280 RNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGF  338 (942)
T ss_pred             cccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCC
Confidence              11           1579999999999999998888775        34455556664

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1.2e-23  Score=158.73  Aligned_cols=212  Identities=18%  Similarity=0.354  Sum_probs=168.1

Q ss_pred             CCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEe------CCC--------C----------------------
Q 021291            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWD------TVQ--------H----------------------   50 (314)
Q Consensus         7 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd------~~~--------~----------------------   50 (314)
                      .++++.++.||.+.|++++|++.+.++++++.|++-.||.      +..        +                      
T Consensus       179 sg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~  258 (481)
T KOG0300|consen  179 SGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDG  258 (481)
T ss_pred             cccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCC
Confidence            4688999999999999999999999999999999999996      111        0                      


Q ss_pred             ----eEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeecccccc
Q 021291           51 ----RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANA  126 (314)
Q Consensus        51 ----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (314)
                          .++..+.+|.  ..|.+..|..  .++.++++++|.+-.+||+++++.+.  .++.+......|            
T Consensus       259 ~tiRvPl~~ltgH~--~vV~a~dWL~--gg~Q~vTaSWDRTAnlwDVEtge~v~--~LtGHd~ELtHc------------  320 (481)
T KOG0300|consen  259 HTIRVPLMRLTGHR--AVVSACDWLA--GGQQMVTASWDRTANLWDVETGEVVN--ILTGHDSELTHC------------  320 (481)
T ss_pred             ceeeeeeeeeeccc--cceEehhhhc--CcceeeeeeccccceeeeeccCceec--cccCcchhcccc------------
Confidence                1245667787  4599999999  89999999999999999999998765  344444443333            


Q ss_pred             ccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCc-eeeeecccccCCCCCcCCCCCc
Q 021291          127 KQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRG  205 (314)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~  205 (314)
                                                  +-+|.. . ++++.+.|.+.++||.+..- .+..|.        ||.+    
T Consensus       321 ----------------------------stHptQ-r-LVvTsSrDtTFRLWDFReaI~sV~VFQ--------GHtd----  358 (481)
T KOG0300|consen  321 ----------------------------STHPTQ-R-LVVTSSRDTTFRLWDFREAIQSVAVFQ--------GHTD----  358 (481)
T ss_pred             ----------------------------ccCCcc-e-EEEEeccCceeEeccchhhcceeeeec--------cccc----
Confidence                                        233443 3 44578889999999998432 345566        7854    


Q ss_pred             eeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCe
Q 021291          206 MCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST  285 (314)
Q Consensus       206 ~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~  285 (314)
                      .++++. |..+   .  .+++|+.|.+|++||+++...++.++.. ..+++.++.+..+..|+.--.+..|++||++..+
T Consensus       359 tVTS~v-F~~d---d--~vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R  431 (481)
T KOG0300|consen  359 TVTSVV-FNTD---D--RVVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR  431 (481)
T ss_pred             ceeEEE-EecC---C--ceeecCCCceEEEeeeccccCcceeeec-CCccceeEeecCCceEEeccCCceEEEEecCCCc
Confidence            666766 8876   2  6999999999999999998899999875 7899999999988888888888899999997554

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=3.5e-25  Score=183.16  Aligned_cols=226  Identities=18%  Similarity=0.295  Sum_probs=183.9

Q ss_pred             EEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEE
Q 021291           12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW   91 (314)
Q Consensus        12 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iw   91 (314)
                      +.+-.|...|.|+..-..++.+++|+.|-.+-+|.+.....+..+.+|..  +|.++.|++  +..+|++|+.+|+|++|
T Consensus        22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hes--pIeSl~f~~--~E~LlaagsasgtiK~w   97 (825)
T KOG0267|consen   22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHES--PIESLTFDT--SERLLAAGSASGTIKVW   97 (825)
T ss_pred             hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCC--cceeeecCc--chhhhcccccCCceeee
Confidence            45557899999999866888999999999999999988888888999994  499999999  87899999999999999


Q ss_pred             eCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCc
Q 021291           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL  171 (314)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d  171 (314)
                      |++..+.++    ++..+....+.                                      +.|+|.+.+.  ++|+.|
T Consensus        98 DleeAk~vr----tLtgh~~~~~s--------------------------------------v~f~P~~~~~--a~gStd  133 (825)
T KOG0267|consen   98 DLEEAKIVR----TLTGHLLNITS--------------------------------------VDFHPYGEFF--ASGSTD  133 (825)
T ss_pred             ehhhhhhhh----hhhccccCcce--------------------------------------eeeccceEEe--cccccc
Confidence            999887654    22222222111                                      4588888765  489999


Q ss_pred             CeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecC
Q 021291          172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH  251 (314)
Q Consensus       172 ~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h  251 (314)
                      +.+++||.+...+...+.        +|    ...+..+. |+|+   |+ +++.|++|..++|||+.. ++.+.++..|
T Consensus       134 td~~iwD~Rk~Gc~~~~~--------s~----~~vv~~l~-lsP~---Gr-~v~~g~ed~tvki~d~~a-gk~~~ef~~~  195 (825)
T KOG0267|consen  134 TDLKIWDIRKKGCSHTYK--------SH----TRVVDVLR-LSPD---GR-WVASGGEDNTVKIWDLTA-GKLSKEFKSH  195 (825)
T ss_pred             ccceehhhhccCceeeec--------CC----cceeEEEe-ecCC---Cc-eeeccCCcceeeeecccc-cccccccccc
Confidence            999999999888888888        56    33455555 9998   66 999999999999999998 9999999999


Q ss_pred             CcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe-------eeeeeecCCCceec
Q 021291          252 LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF-------GIGFVCDQEGNKFG  303 (314)
Q Consensus       252 ~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~-------~~~~~~~~~~~~~~  303 (314)
                      ...|..+.|+|..-++++||.|+++++||+++-+.+..       ..+..+++++..+.
T Consensus       196 e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~  254 (825)
T KOG0267|consen  196 EGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVL  254 (825)
T ss_pred             cccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeee
Confidence            99999999999999999999999999999996554443       33345556665543

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=4.4e-23  Score=154.34  Aligned_cols=235  Identities=17%  Similarity=0.242  Sum_probs=162.3

Q ss_pred             EEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEE
Q 021291           12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW   91 (314)
Q Consensus        12 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iw   91 (314)
                      +....|.++|.+++|+.||..+++|+.|+.+++||+.++ .+..+..|.  ++|.++.|-+......|++||.|.+|+.|
T Consensus        66 ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd--~pvkt~~wv~~~~~~cl~TGSWDKTlKfW  142 (347)
T KOG0647|consen   66 KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-QVSQVAAHD--APVKTCHWVPGMNYQCLVTGSWDKTLKFW  142 (347)
T ss_pred             hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-Ceeeeeecc--cceeEEEEecCCCcceeEecccccceeec
Confidence            344568999999999999999999999999999999998 455677888  45999999883334589999999999999


Q ss_pred             eCCCCCCCCCCeeeeecceeeEEEeeee-eccccccccCCCCcceeeccCCceeeecCCCCCC-----ceeccCCCceEE
Q 021291           92 DIENGGLSSNPSLTIKTNSYHFCKLSLV-KEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-----DDVPAEGPKYMA  165 (314)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~  165 (314)
                      |.+....+.    ++......   +..+ ..+............++.++..............     ++...+.+..+ 
T Consensus       143 D~R~~~pv~----t~~LPeRv---Ya~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~a-  214 (347)
T KOG0647|consen  143 DTRSSNPVA----TLQLPERV---YAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFA-  214 (347)
T ss_pred             ccCCCCeee----eeecccee---eehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceE-
Confidence            999765432    33222111   1111 1233334444455566666544322222211111     66667766554 


Q ss_pred             EeecCcCeEEEEecCCCceeeeecccccCCCCCcCCC--C---CceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccC
Q 021291          166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSK--G---RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (314)
Q Consensus       166 ~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~--~---~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~  240 (314)
                       -|+-+|.+.+..+..+.....|...      -|...  .   --.+.+++ |+|..  |  .|++++.||++.+||-+.
T Consensus       215 -lGsiEGrv~iq~id~~~~~~nFtFk------CHR~~~~~~~~VYaVNsi~-FhP~h--g--tlvTaGsDGtf~FWDkda  282 (347)
T KOG0647|consen  215 -LGSIEGRVAIQYIDDPNPKDNFTFK------CHRSTNSVNDDVYAVNSIA-FHPVH--G--TLVTAGSDGTFSFWDKDA  282 (347)
T ss_pred             -eeeecceEEEEecCCCCccCceeEE------EeccCCCCCCceEEecceE-eeccc--c--eEEEecCCceEEEecchh
Confidence             3777899999988876333333222      23211  1   12455666 99973  3  799999999999999987


Q ss_pred             CCCceEeeecCCcceEEEEEeCCCCeEEEe
Q 021291          241 PGIPLTAMKVHLEPVLCLSIDESCNGGISG  270 (314)
Q Consensus       241 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~  270 (314)
                       ...+.+.+.|..+|++.+|+.+|.+++-+
T Consensus       283 -r~kLk~s~~~~qpItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  283 -RTKLKTSETHPQPITCCSFNRNGSIFAYA  311 (347)
T ss_pred             -hhhhhccCcCCCccceeEecCCCCEEEEE
Confidence             77788888899999999999999987544

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=1.5e-22  Score=151.97  Aligned_cols=231  Identities=13%  Similarity=0.220  Sum_probs=158.2

Q ss_pred             cCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCC----eEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEE
Q 021291           15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH----RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC   90 (314)
Q Consensus        15 ~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~i   90 (314)
                      .+|.+-|.|+.|.+.|+.+|||+.|++|+|||.++.    .+....+.|.+.  |..+.|.+..-|+.+++++.|+++.|
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~S--i~rV~WAhPEfGqvvA~cS~Drtv~i   87 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGS--IWRVVWAHPEFGQVVATCSYDRTVSI   87 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCc--EEEEEecCccccceEEEEecCCceee
Confidence            479999999999999999999999999999996543    566778889855  99999988667899999999999999


Q ss_pred             EeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecC
Q 021291           91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ  170 (314)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  170 (314)
                      |.-.....        ...............         ....+                .++.|.|....+.+++++.
T Consensus        88 WEE~~~~~--------~~~~~~Wv~~ttl~D---------srssV----------------~DV~FaP~hlGLklA~~~a  134 (361)
T KOG2445|consen   88 WEEQEKSE--------EAHGRRWVRRTTLVD---------SRSSV----------------TDVKFAPKHLGLKLAAASA  134 (361)
T ss_pred             eeeccccc--------ccccceeEEEEEeec---------CCcce----------------eEEEecchhcceEEEEecc
Confidence            98642211        010000000000000         00000                0056888777777778888


Q ss_pred             cCeEEEEecCCCceeeeecccc-cCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecC-----CcEEEEEccCCC--
Q 021291          171 LSEVEIWDLNTAERCTRLHQNS-CGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED-----GSILVWDIRNPG--  242 (314)
Q Consensus       171 d~~i~vwd~~~~~~~~~~~~~~-~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~d-----g~i~vwd~~~~~--  242 (314)
                      ||.++||+....-.+....... ......-.......+.|+. |+|..-... +|++|+.+     +.++||.....+  
T Consensus       135 DG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~Cvs-Wn~sr~~~p-~iAvgs~e~a~~~~~~~Iye~~e~~rK  212 (361)
T KOG2445|consen  135 DGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVS-WNPSRMHEP-LIAVGSDEDAPHLNKVKIYEYNENGRK  212 (361)
T ss_pred             CcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEe-eccccccCc-eEEEEcccCCccccceEEEEecCCcce
Confidence            9999999876543332222100 0000011122455778887 998654333 78888876     588999876534  


Q ss_pred             -CceEeeecCCcceEEEEEeCC----CCeEEEecCCCcEEEEecCC
Q 021291          243 -IPLTAMKVHLEPVLCLSIDES----CNGGISGGADQKIVLYNLDH  283 (314)
Q Consensus       243 -~~~~~~~~h~~~v~~~~~~~~----~~~l~s~s~dg~i~iw~~~~  283 (314)
                       ..+.++.+|.++|++++|.|+    ...||+++.|| |+||++..
T Consensus       213 w~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~  257 (361)
T KOG2445|consen  213 WLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKV  257 (361)
T ss_pred             eeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEee
Confidence             345667799999999999774    45689999999 99999984

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.92  E-value=7e-23  Score=168.89  Aligned_cols=245  Identities=17%  Similarity=0.263  Sum_probs=188.1

Q ss_pred             CCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEE--EEeccCCcccEEE-EEEcccCCCCeEEEeec
Q 021291            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVS--SSWVHSAAHGIVS-VATGPSIGLNKVISQGR   84 (314)
Q Consensus         8 ~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~--~~~~~~~~~~v~~-~~~~~~~~~~~l~s~~~   84 (314)
                      .+.-+.+.||...|..+++.+. ..++++|.||++++|+-..++.+.  .+.+|.  +.|.. ++|.+ .++..+++|+.
T Consensus         4 Y~ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~--g~i~~~i~y~e-~~~~~l~~g~~   79 (745)
T KOG0301|consen    4 YKLSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPK--GFIANSICYAE-SDKGRLVVGGM   79 (745)
T ss_pred             ceeEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCc--ceeeccceecc-ccCcceEeecc
Confidence            4567899999999999998754 489999999999999965554443  355555  44666 88876 26667999999


Q ss_pred             CCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCC
Q 021291           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEG  160 (314)
Q Consensus        85 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  160 (314)
                      |.+|.+|...+.    .|.+.+..+....|.++...........-.....+|...   .....+.+|..    +..-|++
T Consensus        80 D~~i~v~~~~~~----~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~---~l~~~l~gH~asVWAv~~l~e~  152 (745)
T KOG0301|consen   80 DTTIIVFKLSQA----EPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIG---ELVYSLQGHTASVWAVASLPEN  152 (745)
T ss_pred             cceEEEEecCCC----CchhhhhccccceeeeecCCcCceEecccccceEEecch---hhhcccCCcchheeeeeecCCC
Confidence            999999999887    457788999999998887665553333444444555443   33344888888    4445666


Q ss_pred             CceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccC
Q 021291          161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (314)
Q Consensus       161 ~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~  240 (314)
                        .++ +|+.|.+|++|.-  ++.+.+|.        +|.+    .+..++ +-|+   +  .+++++.||.|++|++. 
T Consensus       153 --~~v-TgsaDKtIklWk~--~~~l~tf~--------gHtD----~VRgL~-vl~~---~--~flScsNDg~Ir~w~~~-  208 (745)
T KOG0301|consen  153 --TYV-TGSADKTIKLWKG--GTLLKTFS--------GHTD----CVRGLA-VLDD---S--HFLSCSNDGSIRLWDLD-  208 (745)
T ss_pred             --cEE-eccCcceeeeccC--Cchhhhhc--------cchh----heeeeE-EecC---C--CeEeecCCceEEEEecc-
Confidence              233 7888999999974  77888898        8855    566665 7765   2  59999999999999995 


Q ss_pred             CCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeE
Q 021291          241 PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVL  288 (314)
Q Consensus       241 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~  288 (314)
                       +.++.++.+|+.-|.+++...++..++|++.|++++||+.....+..
T Consensus       209 -ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e~~q~I  255 (745)
T KOG0301|consen  209 -GEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDECVQVI  255 (745)
T ss_pred             -CceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecCceEEEE
Confidence             89999999999999999987777789999999999999988444433

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.92  E-value=3.8e-22  Score=167.75  Aligned_cols=276  Identities=15%  Similarity=0.140  Sum_probs=193.0

Q ss_pred             CCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCe-EEEeecC
Q 021291            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNK-VISQGRD   85 (314)
Q Consensus         7 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~s~~~d   85 (314)
                      .++.+++++++.+.|+++.=+|-=..+|.|..+|+|.|++++.++.+.+++...  ++|+.++|..  ||+. +++|+..
T Consensus       191 t~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~--g~VtslSFrt--DG~p~las~~~~  266 (910)
T KOG1539|consen  191 TGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDW--GRVTSLSFRT--DGNPLLASGRSN  266 (910)
T ss_pred             cCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccc--cceeEEEecc--CCCeeEEeccCC
Confidence            468899999999999999999977799999999999999999999999998765  4599999998  7775 5566777


Q ss_pred             CeEEEEeCCCCCCCC------------------CCeeeeec--ceeeEEEee-----------------------eee--
Q 021291           86 GTVKCWDIENGGLSS------------------NPSLTIKT--NSYHFCKLS-----------------------LVK--  120 (314)
Q Consensus        86 g~v~iwd~~~~~~~~------------------~~~~~~~~--~~~~~~~~~-----------------------~~~--  120 (314)
                      |.+.+||++..+++.                  +|++....  +......+.                       ..+  
T Consensus       267 G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~  346 (910)
T KOG1539|consen  267 GDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQ  346 (910)
T ss_pred             ceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccC
Confidence            999999998765432                  00000000  000000000                       000  


Q ss_pred             --------------------------------------------------------------------------------
Q 021291          121 --------------------------------------------------------------------------------  120 (314)
Q Consensus       121 --------------------------------------------------------------------------------  120 (314)
                                                                                                      
T Consensus       347 g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~t  426 (910)
T KOG1539|consen  347 GHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYT  426 (910)
T ss_pred             cEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEE
Confidence                                                                                            


Q ss_pred             ------------------------------cccc---ccccCCCCcceeeccCCceeeec--CCCCCC--ceeccCCCce
Q 021291          121 ------------------------------EPYA---NAKQANEPKDCYEREVGETVDTD--SLCDSK--DDVPAEGPKY  163 (314)
Q Consensus       121 ------------------------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~  163 (314)
                                                    +.+.   ......+....+++..+......  -..|..  ..++-|+.+-
T Consensus       427 W~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~  506 (910)
T KOG1539|consen  427 WNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNR  506 (910)
T ss_pred             EeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCc
Confidence                                          0000   00000111111122111111111  123333  4555565554


Q ss_pred             EEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCC
Q 021291          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI  243 (314)
Q Consensus       164 ~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~  243 (314)
                      ++++++.+|.+++||......+..+..       ++      .+..+. ++...   . .++.+..|-.|+++|..+ .+
T Consensus       507 ~~vsa~~~Gilkfw~f~~k~l~~~l~l-------~~------~~~~iv-~hr~s---~-l~a~~~ddf~I~vvD~~t-~k  567 (910)
T KOG1539|consen  507 LLVSAGADGILKFWDFKKKVLKKSLRL-------GS------SITGIV-YHRVS---D-LLAIALDDFSIRVVDVVT-RK  567 (910)
T ss_pred             eEEEccCcceEEEEecCCcceeeeecc-------CC------Ccceee-eeehh---h-hhhhhcCceeEEEEEchh-hh
Confidence            444666799999999999887777763       22      444444 55542   1 789999999999999998 88


Q ss_pred             ceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe------eeeeeecCCCceecee
Q 021291          244 PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF------GIGFVCDQEGNKFGTT  305 (314)
Q Consensus       244 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~------~~~~~~~~~~~~~~~~  305 (314)
                      .++.+.+|.+.|++++|+|||++|++++.|++|++||+.++..+-.      +..++++|+|..++++
T Consensus       568 vvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~  635 (910)
T KOG1539|consen  568 VVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATV  635 (910)
T ss_pred             hhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEE
Confidence            9999999999999999999999999999999999999999998764      5678899999999987

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=2.3e-23  Score=175.26  Aligned_cols=203  Identities=12%  Similarity=0.194  Sum_probs=139.6

Q ss_pred             EEe-ccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEE--------eeeeeccc--
Q 021291           55 SSW-VHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCK--------LSLVKEPY--  123 (314)
Q Consensus        55 ~~~-~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~--  123 (314)
                      .+. .|.+.  |+++.|++  ||++||+|+.|+.|+||.+..-+...     ..........        ..+.....  
T Consensus       261 e~~~ah~ga--Iw~mKFS~--DGKyLAsaGeD~virVWkVie~e~~~-----~~~~~~~~~~~~~~~~s~~~p~~s~~~~  331 (712)
T KOG0283|consen  261 EISNAHKGA--IWAMKFSH--DGKYLASAGEDGVIRVWKVIESERMR-----VAEGDSSCMYFEYNANSQIEPSTSSEEK  331 (712)
T ss_pred             ccccccCCc--EEEEEeCC--CCceeeecCCCceEEEEEEeccchhc-----ccccccchhhhhhhhccccCcccccccc
Confidence            344 67755  99999999  99999999999999999987632211     0000000000        00000000  


Q ss_pred             ----cccccCCCCccee-----eccCCceeeecCCCCCC----ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecc
Q 021291          124 ----ANAKQANEPKDCY-----EREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQ  190 (314)
Q Consensus       124 ----~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~  190 (314)
                          .............     ...-...+...+.+|.+    ++|+.++  +|+ +++.|.+|+||++...+++..|. 
T Consensus       332 ~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fLL-SSSMDKTVRLWh~~~~~CL~~F~-  407 (712)
T KOG0283|consen  332 ISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FLL-SSSMDKTVRLWHPGRKECLKVFS-  407 (712)
T ss_pred             ccccccccccccCCccccCCCccccccccchhhhhccchhheecccccCC--eeE-eccccccEEeecCCCcceeeEEe-
Confidence                0000000000001     11112345566788887    6777654  444 78889999999999999999997 


Q ss_pred             cccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEe
Q 021291          191 NSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISG  270 (314)
Q Consensus       191 ~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~  270 (314)
                              |    ...++|++ |+|.  |++ ||++|+.||.|+||++.. .+.+. +..-...|++++|.|+|++.+.|
T Consensus       408 --------H----ndfVTcVa-FnPv--DDr-yFiSGSLD~KvRiWsI~d-~~Vv~-W~Dl~~lITAvcy~PdGk~avIG  469 (712)
T KOG0283|consen  408 --------H----NDFVTCVA-FNPV--DDR-YFISGSLDGKVRLWSISD-KKVVD-WNDLRDLITAVCYSPDGKGAVIG  469 (712)
T ss_pred             --------c----CCeeEEEE-eccc--CCC-cEeecccccceEEeecCc-CeeEe-ehhhhhhheeEEeccCCceEEEE
Confidence                    4    56999998 9997  344 999999999999999996 45444 44445899999999999999999


Q ss_pred             cCCCcEEEEecCCCeeeE
Q 021291          271 GADQKIVLYNLDHSTYVL  288 (314)
Q Consensus       271 s~dg~i~iw~~~~~~~~~  288 (314)
                      +.+|.+++|++...+...
T Consensus       470 t~~G~C~fY~t~~lk~~~  487 (712)
T KOG0283|consen  470 TFNGYCRFYDTEGLKLVS  487 (712)
T ss_pred             EeccEEEEEEccCCeEEE
Confidence            999999999998776554

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=3.4e-21  Score=139.00  Aligned_cols=249  Identities=15%  Similarity=0.150  Sum_probs=176.4

Q ss_pred             CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeE-----EEEEeccCCcccEEEEEEcc--cCCCCeEEE
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT-----VSSSWVHSAAHGIVSVATGP--SIGLNKVIS   81 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-----~~~~~~~~~~~~v~~~~~~~--~~~~~~l~s   81 (314)
                      -..+.-+.|.+.|.|.+|+|+|.+|++|+.|.+|++.-.+...+     -..+..|.+.  |..++|-.  ...+..|++
T Consensus        80 v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgt--irdl~fld~~~s~~~il~s  157 (350)
T KOG0641|consen   80 VLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGT--IRDLAFLDDPESGGAILAS  157 (350)
T ss_pred             EEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCc--eeeeEEecCCCcCceEEEe
Confidence            34556678999999999999999999999999999986654322     2345667755  99999964  223456776


Q ss_pred             eec-CCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecC-CCCCC------
Q 021291           82 QGR-DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDS-LCDSK------  153 (314)
Q Consensus        82 ~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------  153 (314)
                      ++. |..|.+-|...++-.    ..+..+..+...+-..................|+++....+...- ..|..      
T Consensus       158 ~gagdc~iy~tdc~~g~~~----~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessa  233 (350)
T KOG0641|consen  158 AGAGDCKIYITDCGRGQGF----HALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSA  233 (350)
T ss_pred             cCCCcceEEEeecCCCCcc----eeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccce
Confidence            554 677777788777543    344444444433322222222233344456667776554333221 11111      


Q ss_pred             ---ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecC
Q 021291          154 ---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED  230 (314)
Q Consensus       154 ---~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~d  230 (314)
                         +++.|.|+  ++++|..|....+||++.++.++.+.        .|    ...+.++. |+|.    -.++++++.|
T Consensus       234 vaav~vdpsgr--ll~sg~~dssc~lydirg~r~iq~f~--------ph----sadir~vr-fsp~----a~yllt~syd  294 (350)
T KOG0641|consen  234 VAAVAVDPSGR--LLASGHADSSCMLYDIRGGRMIQRFH--------PH----SADIRCVR-FSPG----AHYLLTCSYD  294 (350)
T ss_pred             eEEEEECCCcc--eeeeccCCCceEEEEeeCCceeeeeC--------CC----ccceeEEE-eCCC----ceEEEEeccc
Confidence               77889886  33489999999999999999999988        56    44677787 9995    3399999999


Q ss_pred             CcEEEEEccCC---CCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecC
Q 021291          231 GSILVWDIRNP---GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD  282 (314)
Q Consensus       231 g~i~vwd~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~  282 (314)
                      ..|++=|+.-.   .-++.....|.+.+..+.|+|+..-+++.|.|.++.+|-+.
T Consensus       295 ~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  295 MKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             ceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence            99999998721   23445566899999999999999889999999999999764

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.91  E-value=1.3e-22  Score=167.42  Aligned_cols=236  Identities=14%  Similarity=0.256  Sum_probs=183.8

Q ss_pred             eEEecCCCCceeE-EEEcc-CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291           11 VAVLRGHRASVTD-VCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (314)
Q Consensus        11 ~~~l~~h~~~v~~-~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v   88 (314)
                      .+.+.+|.+-|.+ ++|.+ ++-.|++|+.|.+|.+|...+..++..+++|+..  |.+++...  ++. +++||+|.++
T Consensus        50 ~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~sn--VC~ls~~~--~~~-~iSgSWD~Ta  124 (745)
T KOG0301|consen   50 THAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSN--VCSLSIGE--DGT-LISGSWDSTA  124 (745)
T ss_pred             ceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccc--eeeeecCC--cCc-eEecccccce
Confidence            3557788888887 88886 5567999999999999999999999999999965  99999877  655 9999999999


Q ss_pred             EEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCceE
Q 021291           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYM  164 (314)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  164 (314)
                      ++|....-..      .+..+...  .+....-+.. ....++....+.+..+......+.+|.+    +++-+++. ++
T Consensus       125 kvW~~~~l~~------~l~gH~as--VWAv~~l~e~-~~vTgsaDKtIklWk~~~~l~tf~gHtD~VRgL~vl~~~~-fl  194 (745)
T KOG0301|consen  125 KVWRIGELVY------SLQGHTAS--VWAVASLPEN-TYVTGSADKTIKLWKGGTLLKTFSGHTDCVRGLAVLDDSH-FL  194 (745)
T ss_pred             EEecchhhhc------ccCCcchh--eeeeeecCCC-cEEeccCcceeeeccCCchhhhhccchhheeeeEEecCCC-eE
Confidence            9998765322      23333322  2233333333 4556666777777777888888999988    78888764 33


Q ss_pred             EEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCc
Q 021291          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (314)
Q Consensus       165 ~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~  244 (314)
                        +++.||.|++|++ +++.+..+.        +|    +..++++. ..++   +. .++++++|++++||+..   .+
T Consensus       195 --ScsNDg~Ir~w~~-~ge~l~~~~--------gh----tn~vYsis-~~~~---~~-~Ivs~gEDrtlriW~~~---e~  251 (745)
T KOG0301|consen  195 --SCSNDGSIRLWDL-DGEVLLEMH--------GH----TNFVYSIS-MALS---DG-LIVSTGEDRTLRIWKKD---EC  251 (745)
T ss_pred             --eecCCceEEEEec-cCceeeeee--------cc----ceEEEEEE-ecCC---CC-eEEEecCCceEEEeecC---ce
Confidence              6778999999999 788888887        77    55788887 5554   33 89999999999999976   56


Q ss_pred             eEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCe
Q 021291          245 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST  285 (314)
Q Consensus       245 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~  285 (314)
                      .+.+.-....|+++.+-++|. |++|+.||.||||..+..+
T Consensus       252 ~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~R  291 (745)
T KOG0301|consen  252 VQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKDR  291 (745)
T ss_pred             EEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEecccc
Confidence            777775566899999988886 7899999999999887543

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=9e-25  Score=180.74  Aligned_cols=199  Identities=22%  Similarity=0.369  Sum_probs=166.2

Q ss_pred             ceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEE
Q 021291           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (314)
Q Consensus        10 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~   89 (314)
                      .+-.|.+|..+|.++.|+++..+|++|+.+|+|++||+++++.++++.+|...  +.++.|+|  -+.++++++.|+.++
T Consensus        62 ~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~--~~sv~f~P--~~~~~a~gStdtd~~  137 (825)
T KOG0267|consen   62 AITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLN--ITSVDFHP--YGEFFASGSTDTDLK  137 (825)
T ss_pred             hhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccC--cceeeecc--ceEEeccccccccce
Confidence            44568999999999999999999999999999999999999999999999955  99999999  889999999999999


Q ss_pred             EEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeec
Q 021291           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE  169 (314)
Q Consensus        90 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  169 (314)
                      +||++...+..    ....+......                                      +.|+|+|...  +.|+
T Consensus       138 iwD~Rk~Gc~~----~~~s~~~vv~~--------------------------------------l~lsP~Gr~v--~~g~  173 (825)
T KOG0267|consen  138 IWDIRKKGCSH----TYKSHTRVVDV--------------------------------------LRLSPDGRWV--ASGG  173 (825)
T ss_pred             ehhhhccCcee----eecCCcceeEE--------------------------------------EeecCCCcee--eccC
Confidence            99999766643    33332221111                                      5689999743  3677


Q ss_pred             CcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeee
Q 021291          170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK  249 (314)
Q Consensus       170 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~  249 (314)
                      .|.++++||...++....|.        +|    .+.+.++. |+|.+-    +++.|+.|++|++||+++ -+.+...+
T Consensus       174 ed~tvki~d~~agk~~~ef~--------~~----e~~v~sle-~hp~e~----Lla~Gs~d~tv~f~dlet-fe~I~s~~  235 (825)
T KOG0267|consen  174 EDNTVKIWDLTAGKLSKEFK--------SH----EGKVQSLE-FHPLEV----LLAPGSSDRTVRFWDLET-FEVISSGK  235 (825)
T ss_pred             Ccceeeeecccccccccccc--------cc----cccccccc-cCchhh----hhccCCCCceeeeeccce-eEEeeccC
Confidence            79999999999999999998        66    45677777 999733    899999999999999998 67777777


Q ss_pred             cCCcceEEEEEeCCCCeEEEecCCC
Q 021291          250 VHLEPVLCLSIDESCNGGISGGADQ  274 (314)
Q Consensus       250 ~h~~~v~~~~~~~~~~~l~s~s~dg  274 (314)
                      .....|.+++|++++..+.+|..+.
T Consensus       236 ~~~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  236 PETDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             CccCCceeeeecCCceeeecCchhh
Confidence            7788999999999999888887654

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.91  E-value=1.3e-23  Score=159.01  Aligned_cols=213  Identities=18%  Similarity=0.185  Sum_probs=169.3

Q ss_pred             CCCceEEec-CCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC
Q 021291            7 PPDPVAVLR-GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD   85 (314)
Q Consensus         7 ~~~~~~~l~-~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (314)
                      .+.+++.|. +|+..|+|+.|+.|+..+++++.|.+++|.-++.|++++.+++|.  ..|....|.+  +|..+++++.|
T Consensus       294 tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHs--Syvn~a~ft~--dG~~iisaSsD  369 (508)
T KOG0275|consen  294 TGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHS--SYVNEATFTD--DGHHIISASSD  369 (508)
T ss_pred             cchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCcc--ccccceEEcC--CCCeEEEecCC
Confidence            345666676 899999999999999999999999999999999999999999999  5599999999  99999999999


Q ss_pred             CeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEE
Q 021291           86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA  165 (314)
Q Consensus        86 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (314)
                      |+|++|+..+.+|..    +++.........+                                    +-.-|.+..-++
T Consensus       370 gtvkvW~~KtteC~~----Tfk~~~~d~~vns------------------------------------v~~~PKnpeh~i  409 (508)
T KOG0275|consen  370 GTVKVWHGKTTECLS----TFKPLGTDYPVNS------------------------------------VILLPKNPEHFI  409 (508)
T ss_pred             ccEEEecCcchhhhh----hccCCCCccccee------------------------------------EEEcCCCCceEE
Confidence            999999999998866    2222211111001                                    112233333344


Q ss_pred             EeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCce
Q 021291          166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL  245 (314)
Q Consensus       166 ~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~  245 (314)
                      + +...++|++-++. |+.++.+..       |..  ..+...+.. .+|.   |+ ++++.++|+.++.|...+ +..-
T Consensus       410 V-CNrsntv~imn~q-GQvVrsfsS-------GkR--EgGdFi~~~-lSpk---Ge-wiYcigED~vlYCF~~~s-G~LE  472 (508)
T KOG0275|consen  410 V-CNRSNTVYIMNMQ-GQVVRSFSS-------GKR--EGGDFINAI-LSPK---GE-WIYCIGEDGVLYCFSVLS-GKLE  472 (508)
T ss_pred             E-EcCCCeEEEEecc-ceEEeeecc-------CCc--cCCceEEEE-ecCC---Cc-EEEEEccCcEEEEEEeec-Ccee
Confidence            3 3345889999875 777888763       221  233344444 8987   66 999999999999999998 8899


Q ss_pred             EeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEe
Q 021291          246 TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN  280 (314)
Q Consensus       246 ~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~  280 (314)
                      .++..|...|..++.+|..+.|++-+.||.+++|.
T Consensus       473 ~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  473 RTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             eeeecccccccccccCcccchhhhhcccchhhhcC
Confidence            99999999999999999999999999999999995

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.1e-21  Score=166.61  Aligned_cols=247  Identities=15%  Similarity=0.155  Sum_probs=171.9

Q ss_pred             cCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCC-eEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeC
Q 021291           15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH-RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI   93 (314)
Q Consensus        15 ~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~   93 (314)
                      .+|+..-+.++|.|+|.+|++++.||.|++|+.... +....+..+.  ..|.+++...    ++|++|+.+++|.+|.+
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g--~~v~~ia~~s----~~f~~~s~~~tv~~y~f   83 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISG--ELVSSIACYS----NHFLTGSEQNTVLRYKF   83 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccC--ceeEEEeecc----cceEEeeccceEEEeeC
Confidence            369999999999999999999999999999997665 5555555455  4488888754    79999999999999999


Q ss_pred             CCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCceEEEeec
Q 021291           94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGE  169 (314)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~  169 (314)
                      .+++...  ++.--..+...+.++..+.... ...+.....+.+.... .....+.+|..    +.|+|.++.+ + +.+
T Consensus        84 ps~~~~~--iL~Rftlp~r~~~v~g~g~~ia-agsdD~~vK~~~~~D~-s~~~~lrgh~apVl~l~~~p~~~fL-A-vss  157 (933)
T KOG1274|consen   84 PSGEEDT--ILARFTLPIRDLAVSGSGKMIA-AGSDDTAVKLLNLDDS-SQEKVLRGHDAPVLQLSYDPKGNFL-A-VSS  157 (933)
T ss_pred             CCCCccc--eeeeeeccceEEEEecCCcEEE-eecCceeEEEEecccc-chheeecccCCceeeeeEcCCCCEE-E-EEe
Confidence            8876432  2222333444444433322211 1122222333333222 33445666766    8889998644 3 344


Q ss_pred             CcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeee
Q 021291          170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK  249 (314)
Q Consensus       170 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~  249 (314)
                      .||.|++||+.++.+..++.....    .........+..++ |+|+   |. .+++...|+.|++|+... ..+...+.
T Consensus       158 ~dG~v~iw~~~~~~~~~tl~~v~k----~n~~~~s~i~~~~a-W~Pk---~g-~la~~~~d~~Vkvy~r~~-we~~f~Lr  227 (933)
T KOG1274|consen  158 CDGKVQIWDLQDGILSKTLTGVDK----DNEFILSRICTRLA-WHPK---GG-TLAVPPVDNTVKVYSRKG-WELQFKLR  227 (933)
T ss_pred             cCceEEEEEcccchhhhhcccCCc----cccccccceeeeee-ecCC---CC-eEEeeccCCeEEEEccCC-ceeheeec
Confidence            589999999999988777663211    11111134566666 9998   33 677777899999999987 66665554


Q ss_pred             --cCCcceEEEEEeCCCCeEEEecCCCcEEEEecCC
Q 021291          250 --VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH  283 (314)
Q Consensus       250 --~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~  283 (314)
                        .+...+..+.|+|+|+|||+++.||.|.|||+++
T Consensus       228 ~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  228 DKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             ccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence              3445599999999999999999999999999994

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.91  E-value=1.7e-22  Score=165.15  Aligned_cols=253  Identities=16%  Similarity=0.251  Sum_probs=177.8

Q ss_pred             eEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEE--EeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS--SWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (314)
Q Consensus        11 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v   88 (314)
                      ++....|...|..++|.|....|++++.|.++++||+++.++...  +.+|...  |.+++|.|. +...|++|+.||.|
T Consensus        93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~S--vkS~cf~~~-n~~vF~tGgRDg~i  169 (720)
T KOG0321|consen   93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGS--VKSECFMPT-NPAVFCTGGRDGEI  169 (720)
T ss_pred             hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccc--cchhhhccC-CCcceeeccCCCcE
Confidence            455568999999999999667899999999999999999888776  8889855  999999996 55789999999999


Q ss_pred             EEEeCCCCCCCC----------------CCeee---------eecceeeE---EEeeeeeccccccccCCCCcceeeccC
Q 021291           89 KCWDIENGGLSS----------------NPSLT---------IKTNSYHF---CKLSLVKEPYANAKQANEPKDCYEREV  140 (314)
Q Consensus        89 ~iwd~~~~~~~~----------------~~~~~---------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (314)
                      .|||++-.....                .|...         ........   ..+..+....+...+.++...+|+++.
T Consensus       170 llWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk  249 (720)
T KOG0321|consen  170 LLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRK  249 (720)
T ss_pred             EEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecc
Confidence            999987543100                00000         00011111   112222233344555567888999977


Q ss_pred             Cceeee-------cCCCCCC-------ceeccCCCceEEEeecCcCeEEEEecCCCce--eeeecccccCCCCCcCCCCC
Q 021291          141 GETVDT-------DSLCDSK-------DDVPAEGPKYMAVAGEQLSEVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGR  204 (314)
Q Consensus       141 ~~~~~~-------~~~~~~~-------~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~--~~~~~~~~~~~~~~h~~~~~  204 (314)
                      ......       .+.-|..       +.....|.+++| ++. |+.|++|++.+...  +..+.        ++   ..
T Consensus       250 ~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~A-sCt-D~sIy~ynm~s~s~sP~~~~s--------g~---~~  316 (720)
T KOG0321|consen  250 NYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFA-SCT-DNSIYFYNMRSLSISPVAEFS--------GK---LN  316 (720)
T ss_pred             cccccccCCCcccCccCcccceeeeEEEEecCCCCeEEE-Eec-CCcEEEEeccccCcCchhhcc--------Cc---cc
Confidence            643222       2222211       555566788876 455 89999999986542  23333        22   12


Q ss_pred             ceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEe--CCCCeEEEecCCCcEEEEecC
Q 021291          205 GMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSID--ESCNGGISGGADQKIVLYNLD  282 (314)
Q Consensus       205 ~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~l~s~s~dg~i~iw~~~  282 (314)
                      ...+--...+|+   +. ++++|+.|...++|.+.++..+...+.+|...|++++|.  +.+. ++|++.|-.+++|++.
T Consensus       317 ~sf~vks~lSpd---~~-~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~-v~TcSdD~~~kiW~l~  391 (720)
T KOG0321|consen  317 SSFYVKSELSPD---DC-SLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTP-VATCSDDFRVKIWRLS  391 (720)
T ss_pred             ceeeeeeecCCC---Cc-eEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCC-ceeeccCcceEEEecc
Confidence            222221237777   55 999999999999999999888899999999999999994  4444 7888999999999996


Q ss_pred             CC
Q 021291          283 HS  284 (314)
Q Consensus       283 ~~  284 (314)
                      .+
T Consensus       392 ~~  393 (720)
T KOG0321|consen  392 NG  393 (720)
T ss_pred             Cc
Confidence            55

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=2.7e-22  Score=158.03  Aligned_cols=211  Identities=16%  Similarity=0.240  Sum_probs=162.5

Q ss_pred             eEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEE-E-----------------eccCCcccEEEEEEcc
Q 021291           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS-S-----------------WVHSAAHGIVSVATGP   72 (314)
Q Consensus        11 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-~-----------------~~~~~~~~v~~~~~~~   72 (314)
                      ++.+..|.-+|.+++++|++.+.++++.||+|.=|++.+++.... +                 +.|.  ..|.+++.++
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~--keil~~avS~  212 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHV--KEILTLAVSS  212 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccccccc--ceeEEEEEcC
Confidence            778889999999999999999999999999999999988764311 1                 1444  4599999999


Q ss_pred             cCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCC
Q 021291           73 SIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDS  152 (314)
Q Consensus        73 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (314)
                        |+++|++|+.|..|.||+.++.+.++  .+..+...+..                                       
T Consensus       213 --Dgkylatgg~d~~v~Iw~~~t~ehv~--~~~ghr~~V~~---------------------------------------  249 (479)
T KOG0299|consen  213 --DGKYLATGGRDRHVQIWDCDTLEHVK--VFKGHRGAVSS---------------------------------------  249 (479)
T ss_pred             --CCcEEEecCCCceEEEecCcccchhh--cccccccceee---------------------------------------
Confidence              99999999999999999999987655  22222222221                                       


Q ss_pred             CceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCc
Q 021291          153 KDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS  232 (314)
Q Consensus       153 ~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~  232 (314)
                       ++|-..-..++  +++.|++|++|++.....+.++-        +|.+    .+.++.+.+-    ++ .+.+|+.|++
T Consensus       250 -L~fr~gt~~ly--s~s~Drsvkvw~~~~~s~vetly--------GHqd----~v~~IdaL~r----eR-~vtVGgrDrT  309 (479)
T KOG0299|consen  250 -LAFRKGTSELY--SASADRSVKVWSIDQLSYVETLY--------GHQD----GVLGIDALSR----ER-CVTVGGRDRT  309 (479)
T ss_pred             -eeeecCcccee--eeecCCceEEEehhHhHHHHHHh--------CCcc----ceeeechhcc----cc-eEEeccccce
Confidence             23333334444  56679999999999888888887        7854    5555553332    33 6777779999


Q ss_pred             EEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291          233 ILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF  289 (314)
Q Consensus       233 i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~  289 (314)
                      +++|++.  ......+.+|.+.+-+++|-.+. .++|||.||.|.+|++.+.+.++.
T Consensus       310 ~rlwKi~--eesqlifrg~~~sidcv~~In~~-HfvsGSdnG~IaLWs~~KKkplf~  363 (479)
T KOG0299|consen  310 VRLWKIP--EESQLIFRGGEGSIDCVAFINDE-HFVSGSDNGSIALWSLLKKKPLFT  363 (479)
T ss_pred             eEEEecc--ccceeeeeCCCCCeeeEEEeccc-ceeeccCCceEEEeeecccCceeE
Confidence            9999996  44455677899999999995444 589999999999999998888775

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=3.3e-21  Score=145.31  Aligned_cols=211  Identities=15%  Similarity=0.155  Sum_probs=135.3

Q ss_pred             EEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccc-cccCCCC
Q 021291           54 SSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN-AKQANEP  132 (314)
Q Consensus        54 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  132 (314)
                      +.++...  ..|.++.|++  +|..+++++.|.+|+|||..+++.++  .+..+........|.-....... ..-....
T Consensus         8 k~f~~~~--~~i~sl~fs~--~G~~litss~dDsl~LYd~~~g~~~~--ti~skkyG~~~~~Fth~~~~~i~sStk~d~t   81 (311)
T KOG1446|consen    8 KVFRETN--GKINSLDFSD--DGLLLITSSEDDSLRLYDSLSGKQVK--TINSKKYGVDLACFTHHSNTVIHSSTKEDDT   81 (311)
T ss_pred             cccccCC--CceeEEEecC--CCCEEEEecCCCeEEEEEcCCCceee--EeecccccccEEEEecCCceEEEccCCCCCc
Confidence            3444444  4499999999  99999999999999999999998765  22222223332222221111111 1111223


Q ss_pred             cceeeccCCceeeecCCCCCC----ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceee
Q 021291          133 KDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCM  208 (314)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  208 (314)
                      .+...+... .....+.||..    ++.+|-++.++  +++.|++|++||++..++...+..             .+.. 
T Consensus        82 IryLsl~dN-kylRYF~GH~~~V~sL~~sP~~d~Fl--S~S~D~tvrLWDlR~~~cqg~l~~-------------~~~p-  144 (311)
T KOG1446|consen   82 IRYLSLHDN-KYLRYFPGHKKRVNSLSVSPKDDTFL--SSSLDKTVRLWDLRVKKCQGLLNL-------------SGRP-  144 (311)
T ss_pred             eEEEEeecC-ceEEEcCCCCceEEEEEecCCCCeEE--ecccCCeEEeeEecCCCCceEEec-------------CCCc-
Confidence            333444433 45567889988    88899987655  788899999999998776555442             1111 


Q ss_pred             eEEEecCCCCCCceEEEEeecCCcEEEEEccCC----------------------------------------------C
Q 021291          209 AVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP----------------------------------------------G  242 (314)
Q Consensus       209 ~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~----------------------------------------------~  242 (314)
                       +++|.|.   |. ++|++.....|++||+|..                                              |
T Consensus       145 -i~AfDp~---GL-ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G  219 (311)
T KOG1446|consen  145 -IAAFDPE---GL-IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG  219 (311)
T ss_pred             -ceeECCC---Cc-EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC
Confidence             1136665   33 5555555556666666542                                              3


Q ss_pred             CceEeeecCCcc---eEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEeeee
Q 021291          243 IPLTAMKVHLEP---VLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFGIG  292 (314)
Q Consensus       243 ~~~~~~~~h~~~---v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~  292 (314)
                      ..+.++..+...   -....|.||++++++|+.||+|.+|+++++.++....+
T Consensus       220 ~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~  272 (311)
T KOG1446|consen  220 TVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRG  272 (311)
T ss_pred             cEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecC
Confidence            344444444332   14667899999999999999999999999998877555

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=8.2e-23  Score=170.43  Aligned_cols=210  Identities=17%  Similarity=0.288  Sum_probs=155.4

Q ss_pred             CceeEEEEccCCCEEEEecCCCeEEEEeCCCC----eEEEEEeccCC-cccEEEEEEcccCCCCeEEEeecCCeEEEEeC
Q 021291           19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQH----RTVSSSWVHSA-AHGIVSVATGPSIGLNKVISQGRDGTVKCWDI   93 (314)
Q Consensus        19 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~----~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~   93 (314)
                      ....+++.+++-..++.++.. .++||.+...    ++...++.... ...+..+.|.. .+.++|++++..|.|.+||+
T Consensus        40 ~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~-~~~NlIAT~s~nG~i~vWdl  117 (839)
T KOG0269|consen   40 AKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQ-LYSNLIATCSTNGVISVWDL  117 (839)
T ss_pred             cccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhccccc-chhhhheeecCCCcEEEEec
Confidence            456778888888888888776 6888877643    22222211110 02356678874 36789999999999999999


Q ss_pred             CCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCe
Q 021291           94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSE  173 (314)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~  173 (314)
                      ..... .+.+..+..+......                                      ++|++...++++ +|+.||+
T Consensus       118 nk~~r-nk~l~~f~EH~Rs~~~--------------------------------------ldfh~tep~ili-SGSQDg~  157 (839)
T KOG0269|consen  118 NKSIR-NKLLTVFNEHERSANK--------------------------------------LDFHSTEPNILI-SGSQDGT  157 (839)
T ss_pred             Ccccc-chhhhHhhhhccceee--------------------------------------eeeccCCccEEE-ecCCCce
Confidence            86311 1111122222222111                                      457777777766 8999999


Q ss_pred             EEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCc
Q 021291          174 VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE  253 (314)
Q Consensus       174 i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~  253 (314)
                      |++||++..+...++.        +.    ...+..+. |+|..  +. .++++.+.|.+++||+|.+.++...+.+|.+
T Consensus       158 vK~~DlR~~~S~~t~~--------~n----SESiRDV~-fsp~~--~~-~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~G  221 (839)
T KOG0269|consen  158 VKCWDLRSKKSKSTFR--------SN----SESIRDVK-FSPGY--GN-KFASIHDSGYLQLWDLRQPDRCEKKLTAHNG  221 (839)
T ss_pred             EEEEeeeccccccccc--------cc----chhhhcee-eccCC--Cc-eEEEecCCceEEEeeccCchhHHHHhhcccC
Confidence            9999999888777776        33    33677777 99974  33 8999999999999999998999999999999


Q ss_pred             ceEEEEEeCCCCeEEEecCCCcEEEEecCCCee
Q 021291          254 PVLCLSIDESCNGGISGGADQKIVLYNLDHSTY  286 (314)
Q Consensus       254 ~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~  286 (314)
                      +|.++.|+|++.+|||||.|+.|+|||+..++.
T Consensus       222 pV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~  254 (839)
T KOG0269|consen  222 PVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA  254 (839)
T ss_pred             ceEEEeecCCCceeeecCCCccEEEEeccCCCc
Confidence            999999999999999999999999999986543

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=5.8e-23  Score=178.20  Aligned_cols=231  Identities=19%  Similarity=0.292  Sum_probs=169.0

Q ss_pred             CCceeEEEEccCCCE----EEEecCCCeEEEEeCCC---C---eEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCe
Q 021291           18 RASVTDVCFHQTKPI----LFAGTTGGELRIWDTVQ---H---RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (314)
Q Consensus        18 ~~~v~~~~~~~~~~~----l~s~~~dg~v~iwd~~~---~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (314)
                      ...-+.++|.+.|..    ||.|..||.|.+||...   +   ..+.+...|.+.  |..+.|++. .+++|++|+.||.
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~--V~gLDfN~~-q~nlLASGa~~ge  140 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGP--VLGLDFNPF-QGNLLASGADDGE  140 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCc--eeeeecccc-CCceeeccCCCCc
Confidence            345678999986654    89999999999999765   2   235566678755  999999995 4469999999999


Q ss_pred             EEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEe
Q 021291           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA  167 (314)
Q Consensus        88 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (314)
                      |.|||++..+..-    +............                                    ++|+..-.++|+ +
T Consensus       141 I~iWDlnn~~tP~----~~~~~~~~~eI~~------------------------------------lsWNrkvqhILA-S  179 (1049)
T KOG0307|consen  141 ILIWDLNKPETPF----TPGSQAPPSEIKC------------------------------------LSWNRKVSHILA-S  179 (1049)
T ss_pred             EEEeccCCcCCCC----CCCCCCCcccceE------------------------------------eccchhhhHHhh-c
Confidence            9999998754321    1110000000000                                    557777777776 5


Q ss_pred             ecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCC---cEEEEEccCCCCc
Q 021291          168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG---SILVWDIRNPGIP  244 (314)
Q Consensus       168 g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg---~i~vwd~~~~~~~  244 (314)
                      ++.+|.+.|||++..+.+..+.        .+..  +..+..+. |+|+.. .  .+++++.|.   .|.+||+|....+
T Consensus       180 ~s~sg~~~iWDlr~~~pii~ls--------~~~~--~~~~S~l~-WhP~~a-T--ql~~As~dd~~PviqlWDlR~assP  245 (1049)
T KOG0307|consen  180 GSPSGRAVIWDLRKKKPIIKLS--------DTPG--RMHCSVLA-WHPDHA-T--QLLVASGDDSAPVIQLWDLRFASSP  245 (1049)
T ss_pred             cCCCCCceeccccCCCcccccc--------cCCC--ccceeeee-eCCCCc-e--eeeeecCCCCCceeEeecccccCCc
Confidence            6668999999999988877776        3322  24566776 999954 2  455555443   5999999988899


Q ss_pred             eEeeecCCcceEEEEEeCCC-CeEEEecCCCcEEEEecCCCeeeEeeeeeeecCCCceeceeecccc
Q 021291          245 LTAMKVHLEPVLCLSIDESC-NGGISGGADQKIVLYNLDHSTYVLFGIGFVCDQEGNKFGTTWHIRH  310 (314)
Q Consensus       245 ~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  310 (314)
                      ++++++|...|.+|.|++.. .+|+|++.|+.|.+|+.++++.+..+..    ...=.|...|+.|.
T Consensus       246 ~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~----~~nW~fdv~w~pr~  308 (1049)
T KOG0307|consen  246 LKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA----QGNWCFDVQWCPRN  308 (1049)
T ss_pred             hhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC----CCcceeeeeecCCC
Confidence            99999999999999997655 7899999999999999999998876422    23335566666553

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=4.3e-22  Score=156.26  Aligned_cols=211  Identities=15%  Similarity=0.224  Sum_probs=156.1

Q ss_pred             ecCCCCceeEEEEcc-CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEe
Q 021291           14 LRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD   92 (314)
Q Consensus        14 l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd   92 (314)
                      -.+|++.|.+++|+. -.+.||+||.|.+|++||+.++++..++..|...  |.++.|+|. ....|++|+.|++|.+.|
T Consensus       239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~--Vq~l~wh~~-~p~~LLsGs~D~~V~l~D  315 (463)
T KOG0270|consen  239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKK--VQTLEWHPY-EPSVLLSGSYDGTVALKD  315 (463)
T ss_pred             cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCc--eeEEEecCC-CceEEEeccccceEEeee
Confidence            347999999999998 4568999999999999999999999999988855  999999996 568999999999999999


Q ss_pred             CCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcC
Q 021291           93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS  172 (314)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~  172 (314)
                      .+....... .+.+...-..                                         ++|.|.....++ ++..||
T Consensus       316 ~R~~~~s~~-~wk~~g~VEk-----------------------------------------v~w~~~se~~f~-~~tddG  352 (463)
T KOG0270|consen  316 CRDPSNSGK-EWKFDGEVEK-----------------------------------------VAWDPHSENSFF-VSTDDG  352 (463)
T ss_pred             ccCccccCc-eEEeccceEE-----------------------------------------EEecCCCceeEE-EecCCc
Confidence            995322110 1111111000                                         568887776665 577899


Q ss_pred             eEEEEecCCC-ceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecC
Q 021291          173 EVEIWDLNTA-ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH  251 (314)
Q Consensus       173 ~i~vwd~~~~-~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h  251 (314)
                      +|+-+|+|.. +++.++.        +|..    .+.++. +++.-+ +  ++++++.|+.|++|++.. ..+. ....|
T Consensus       353 ~v~~~D~R~~~~~vwt~~--------AHd~----~ISgl~-~n~~~p-~--~l~t~s~d~~Vklw~~~~-~~~~-~v~~~  414 (463)
T KOG0270|consen  353 TVYYFDIRNPGKPVWTLK--------AHDD----EISGLS-VNIQTP-G--LLSTASTDKVVKLWKFDV-DSPK-SVKEH  414 (463)
T ss_pred             eEEeeecCCCCCceeEEE--------eccC----CcceEE-ecCCCC-c--ceeeccccceEEEEeecC-CCCc-ccccc
Confidence            9999999976 7888888        7855    455554 665533 2  899999999999999975 3321 11122


Q ss_pred             C---cceEEEEEeCCCC-eEEEecCCCcEEEEecCCCeeeE
Q 021291          252 L---EPVLCLSIDESCN-GGISGGADQKIVLYNLDHSTYVL  288 (314)
Q Consensus       252 ~---~~v~~~~~~~~~~-~l~s~s~dg~i~iw~~~~~~~~~  288 (314)
                      .   +...|.+++|+-. .++.|+..+.++|||+.+...+.
T Consensus       415 ~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~  455 (463)
T KOG0270|consen  415 SFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR  455 (463)
T ss_pred             cccccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence            2   2355666777654 46788888889999998776543

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=3.9e-22  Score=156.50  Aligned_cols=201  Identities=21%  Similarity=0.300  Sum_probs=148.8

Q ss_pred             eEEEEcc-------CCCEEEEecCCCeEEEEeCCCCeE---EE------------------EEeccCCcccEEEEEEccc
Q 021291           22 TDVCFHQ-------TKPILFAGTTGGELRIWDTVQHRT---VS------------------SSWVHSAAHGIVSVATGPS   73 (314)
Q Consensus        22 ~~~~~~~-------~~~~l~s~~~dg~v~iwd~~~~~~---~~------------------~~~~~~~~~~v~~~~~~~~   73 (314)
                      .|++|..       -|+++|.|+.|..|.|||+.-...   ..                  ...+|+  +.|..|+|+..
T Consensus       177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHT--davl~Ls~n~~  254 (463)
T KOG0270|consen  177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHT--DAVLALSWNRN  254 (463)
T ss_pred             hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccch--HHHHHHHhccc
Confidence            4666643       367999999999999999763110   00                  112465  44889999873


Q ss_pred             CCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC
Q 021291           74 IGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK  153 (314)
Q Consensus        74 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (314)
                       -.+.|++||.|.+|++||+.++++..  .++.+......                                        
T Consensus       255 -~~nVLaSgsaD~TV~lWD~~~g~p~~--s~~~~~k~Vq~----------------------------------------  291 (463)
T KOG0270|consen  255 -FRNVLASGSADKTVKLWDVDTGKPKS--SITHHGKKVQT----------------------------------------  291 (463)
T ss_pred             -cceeEEecCCCceEEEEEcCCCCcce--ehhhcCCceeE----------------------------------------
Confidence             34789999999999999999998754  33333333322                                        


Q ss_pred             ceeccCCCceEEEeecCcCeEEEEecCCCce-eeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCc
Q 021291          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS  232 (314)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~  232 (314)
                      +.|+|....+++ +|+.|++|.+.|.|.... -..++             ..+-+-.++ |.|...   ..++++..||.
T Consensus       292 l~wh~~~p~~LL-sGs~D~~V~l~D~R~~~~s~~~wk-------------~~g~VEkv~-w~~~se---~~f~~~tddG~  353 (463)
T KOG0270|consen  292 LEWHPYEPSVLL-SGSYDGTVALKDCRDPSNSGKEWK-------------FDGEVEKVA-WDPHSE---NSFFVSTDDGT  353 (463)
T ss_pred             EEecCCCceEEE-eccccceEEeeeccCccccCceEE-------------eccceEEEE-ecCCCc---eeEEEecCCce
Confidence            457777766665 799999999999995322 12222             234566666 888743   38999999999


Q ss_pred             EEEEEccCCCCceEeeecCCcceEEEEEeCCC-CeEEEecCCCcEEEEecCCCe
Q 021291          233 ILVWDIRNPGIPLTAMKVHLEPVLCLSIDESC-NGGISGGADQKIVLYNLDHST  285 (314)
Q Consensus       233 i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~i~iw~~~~~~  285 (314)
                      |+-+|+|++++++.++++|.++|.+|++++.- .+++|+|.|+.|++|++....
T Consensus       354 v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~  407 (463)
T KOG0270|consen  354 VYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS  407 (463)
T ss_pred             EEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCC
Confidence            99999999899999999999999999996543 368999999999999986443

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.89  E-value=1.4e-21  Score=154.08  Aligned_cols=257  Identities=19%  Similarity=0.243  Sum_probs=177.8

Q ss_pred             eEEecCCCCceeEEEEccCC--CEEEEecCCCeEEEEeCCCC----eEEEEEeccCCcccEEEEEEcccCCCCeEEEeec
Q 021291           11 VAVLRGHRASVTDVCFHQTK--PILFAGTTGGELRIWDTVQH----RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (314)
Q Consensus        11 ~~~l~~h~~~v~~~~~~~~~--~~l~s~~~dg~v~iwd~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (314)
                      ..+.+-|.+.|++++|+|..  +++|+|..-|+|-+||+.+.    .-+..+..|.  .+|.+|.|+|. +...+++.|.
T Consensus       179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs--~~Vs~l~F~P~-n~s~i~ssSy  255 (498)
T KOG4328|consen  179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHS--GPVSGLKFSPA-NTSQIYSSSY  255 (498)
T ss_pred             cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCC--ccccceEecCC-Chhheeeecc
Confidence            44566789999999999943  68899999999999999532    2344555666  55999999996 4478999999


Q ss_pred             CCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccc-cccCCCCcceeeccCCceeeecCCCCCC----ceeccC
Q 021291           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN-AKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAE  159 (314)
Q Consensus        85 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  159 (314)
                      ||+|++-|++......  ++........++.+.+....... ....-+....++.+....-...+.-|..    ++++|.
T Consensus       256 DGtiR~~D~~~~i~e~--v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~  333 (498)
T KOG4328|consen  256 DGTIRLQDFEGNISEE--VLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPV  333 (498)
T ss_pred             CceeeeeeecchhhHH--HhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCC
Confidence            9999999999875432  44554344444433333222211 1222235567777766654444444444    899999


Q ss_pred             CCceEEEeecCcCeEEEEecCCCceeee-ecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEc
Q 021291          160 GPKYMAVAGEQLSEVEIWDLNTAERCTR-LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI  238 (314)
Q Consensus       160 ~~~~~~~~g~~d~~i~vwd~~~~~~~~~-~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~  238 (314)
                      ...+++ +++.|++++|||++....... +         -+.-+++..+.+.. |+|.   +. .|++.+.|..|+|||.
T Consensus       334 ~p~~la-T~s~D~T~kIWD~R~l~~K~sp~---------lst~~HrrsV~sAy-FSPs---~g-tl~TT~~D~~IRv~ds  398 (498)
T KOG4328|consen  334 CPWFLA-TASLDQTAKIWDLRQLRGKASPF---------LSTLPHRRSVNSAY-FSPS---GG-TLLTTCQDNEIRVFDS  398 (498)
T ss_pred             Cchhee-ecccCcceeeeehhhhcCCCCcc---------eecccccceeeeeE-EcCC---CC-ceEeeccCCceEEeec
Confidence            988887 677799999999996543332 1         11122355677776 9998   33 5999999999999998


Q ss_pred             c---CCCCceEeeecCC----cc--eEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeE
Q 021291          239 R---NPGIPLTAMKVHL----EP--VLCLSIDESCNGGISGGADQKIVLYNLDHSTYVL  288 (314)
Q Consensus       239 ~---~~~~~~~~~~~h~----~~--v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~  288 (314)
                      .   ....+...+. |.    ..  .....|+|+..++++|-.-..|-|+|-..++.+.
T Consensus       399 s~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~  456 (498)
T KOG4328|consen  399 SCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVC  456 (498)
T ss_pred             ccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEee
Confidence            4   2134444443 32    22  3456799999999999999999999988877443

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=6.8e-21  Score=156.21  Aligned_cols=250  Identities=15%  Similarity=0.192  Sum_probs=181.7

Q ss_pred             EEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCe
Q 021291           24 VCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPS  103 (314)
Q Consensus        24 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~  103 (314)
                      +.|+. .+.||.|... .|.+|+..+++.......+.  ..|+++.|++  +|.+|+.|..+|.|.|||..+.+.+.  .
T Consensus       183 ldWss-~n~laValg~-~vylW~~~s~~v~~l~~~~~--~~vtSv~ws~--~G~~LavG~~~g~v~iwD~~~~k~~~--~  254 (484)
T KOG0305|consen  183 LDWSS-ANVLAVALGQ-SVYLWSASSGSVTELCSFGE--ELVTSVKWSP--DGSHLAVGTSDGTVQIWDVKEQKKTR--T  254 (484)
T ss_pred             hhccc-CCeEEEEecc-eEEEEecCCCceEEeEecCC--CceEEEEECC--CCCEEEEeecCCeEEEEehhhccccc--c
Confidence            67774 4467766544 69999999988666555555  5599999999  99999999999999999998877654  2


Q ss_pred             eee-ecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCceEEEeecCcCeEEEEe
Q 021291          104 LTI-KTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWD  178 (314)
Q Consensus       104 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~vwd  178 (314)
                      +.. +........+.   ..........+....++++........+.+|..    +.|++++.++.  +|+.|+.+.|||
T Consensus       255 ~~~~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lA--SGgnDN~~~Iwd  329 (484)
T KOG0305|consen  255 LRGSHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLA--SGGNDNVVFIWD  329 (484)
T ss_pred             ccCCcCceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeec--cCCCccceEecc
Confidence            222 22222222222   222233334445555667666655556777777    99999997543  788899999999


Q ss_pred             cCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEe--ecCCcEEEEEccCCCCceEeeecCCcceE
Q 021291          179 LNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG--YEDGSILVWDIRNPGIPLTAMKVHLEPVL  256 (314)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g--~~dg~i~vwd~~~~~~~~~~~~~h~~~v~  256 (314)
                      ....+++..+.        .|    .+.+-+++ |+|-.. |  +||+|  +.|+.|++||..+ +..+..+.. ...|.
T Consensus       330 ~~~~~p~~~~~--------~H----~aAVKA~a-wcP~q~-~--lLAsGGGs~D~~i~fwn~~~-g~~i~~vdt-gsQVc  391 (484)
T KOG0305|consen  330 GLSPEPKFTFT--------EH----TAAVKALA-WCPWQS-G--LLATGGGSADRCIKFWNTNT-GARIDSVDT-GSQVC  391 (484)
T ss_pred             CCCccccEEEe--------cc----ceeeeEee-eCCCcc-C--ceEEcCCCcccEEEEEEcCC-CcEeccccc-CCcee
Confidence            98888888887        56    55777887 999854 3  77775  5799999999998 888877764 67999


Q ss_pred             EEEEeCCCCeEEEec--CCCcEEEEecCCCeeeEe-------eeeeeecCCCceece
Q 021291          257 CLSIDESCNGGISGG--ADQKIVLYNLDHSTYVLF-------GIGFVCDQEGNKFGT  304 (314)
Q Consensus       257 ~~~~~~~~~~l~s~s--~dg~i~iw~~~~~~~~~~-------~~~~~~~~~~~~~~~  304 (314)
                      +|.|++..+-|+++-  .++.|.||++.+-+.+..       ...++.+|+|..+++
T Consensus       392 sL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t  448 (484)
T KOG0305|consen  392 SLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVT  448 (484)
T ss_pred             eEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEE
Confidence            999999886665543  467899999988776654       344567788766554

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=4.2e-21  Score=144.21  Aligned_cols=228  Identities=16%  Similarity=0.167  Sum_probs=163.5

Q ss_pred             CCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCC
Q 021291           16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN   95 (314)
Q Consensus        16 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~   95 (314)
                      .|..++.+++|.+ ...+++|+.||.|+++|+.++.... +..|.  .+|.||.+++  ....+++||+|++|++||.++
T Consensus        52 ~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~-igth~--~~i~ci~~~~--~~~~vIsgsWD~~ik~wD~R~  125 (323)
T KOG1036|consen   52 KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQ-IGTHD--EGIRCIEYSY--EVGCVISGSWDKTIKFWDPRN  125 (323)
T ss_pred             ecCCceeeeeccC-CceEEEeccCceEEEEEecCCccee-eccCC--CceEEEEeec--cCCeEEEcccCccEEEEeccc
Confidence            4899999999997 4578999999999999999876653 45576  5599999998  778999999999999999997


Q ss_pred             CCCCCCCeeeeecceeeEEEeeeee-ccccccccCCCCcceeeccCCceeeecCCCCCC-----ceeccCCCceEEEeec
Q 021291           96 GGLSSNPSLTIKTNSYHFCKLSLVK-EPYANAKQANEPKDCYEREVGETVDTDSLCDSK-----DDVPAEGPKYMAVAGE  169 (314)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~  169 (314)
                      .....    ......   ..+.... .........+..+.+|+++.........+..-.     +++-|++..++  .++
T Consensus       126 ~~~~~----~~d~~k---kVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~--~sS  196 (323)
T KOG1036|consen  126 KVVVG----TFDQGK---KVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYV--VSS  196 (323)
T ss_pred             ccccc----ccccCc---eEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceE--EEe
Confidence            43322    222222   1222222 223333455667778888776654432222211     77778777665  466


Q ss_pred             CcCeEEEEecCCC----ceeeeecccccCCCCCcCCCC-----CceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccC
Q 021291          170 QLSEVEIWDLNTA----ERCTRLHQNSCGGSPNFSSKG-----RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (314)
Q Consensus       170 ~d~~i~vwd~~~~----~~~~~~~~~~~~~~~~h~~~~-----~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~  240 (314)
                      -||.|.+=.+...    +....|+        .|....     --++.++. |+|-..    .|++|+.||.|.+||+.+
T Consensus       197 ieGRVavE~~d~s~~~~skkyaFk--------CHr~~~~~~~~~yPVNai~-Fhp~~~----tfaTgGsDG~V~~Wd~~~  263 (323)
T KOG1036|consen  197 IEGRVAVEYFDDSEEAQSKKYAFK--------CHRLSEKDTEIIYPVNAIA-FHPIHG----TFATGGSDGIVNIWDLFN  263 (323)
T ss_pred             ecceEEEEccCCchHHhhhceeEE--------eeecccCCceEEEEeceeE-eccccc----eEEecCCCceEEEccCcc
Confidence            7899888666544    3334444        343222     22577787 999732    799999999999999998


Q ss_pred             CCCceEeeecCCcceEEEEEeCCCCeEEEecC
Q 021291          241 PGIPLTAMKVHLEPVLCLSIDESCNGGISGGA  272 (314)
Q Consensus       241 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~  272 (314)
                       .+.+..+......|.+++|+.+|..||.++.
T Consensus       264 -rKrl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  264 -RKRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             -hhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence             8888888887788999999999999999874

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.89  E-value=7.4e-22  Score=155.34  Aligned_cols=214  Identities=14%  Similarity=0.210  Sum_probs=168.1

Q ss_pred             CCceEEecCCCCceeEEEEcc-CCCEEEEecCCCeEEEEeCCCCe-------EEEEEeccCCcccEEEEEEcccCCCCeE
Q 021291            8 PDPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHR-------TVSSSWVHSAAHGIVSVATGPSIGLNKV   79 (314)
Q Consensus         8 ~~~~~~l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~l   79 (314)
                      .+|-.+|+||.+.-..++|++ ..-.|++++.|++|++||+....       ....+.+|.  +.|..++|++. +..+|
T Consensus       167 ~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~--~~VeDV~~h~~-h~~lF  243 (422)
T KOG0264|consen  167 CRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHE--DVVEDVAWHPL-HEDLF  243 (422)
T ss_pred             CCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCC--cceehhhcccc-chhhh
Confidence            356668999999999999999 44589999999999999987432       345677888  45999999996 45789


Q ss_pred             EEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ce
Q 021291           80 ISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DD  155 (314)
Q Consensus        80 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  155 (314)
                      ++++.|+.+.|||++++..........+......+.|++................+|+++........+.+|.+    +.
T Consensus       244 ~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~  323 (422)
T KOG0264|consen  244 GSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVE  323 (422)
T ss_pred             eeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEE
Confidence            99999999999999964222222344556677788888888777777888889999999999988889999988    99


Q ss_pred             eccCCCceEEEeecCcCeEEEEecCCCceeee------------ecccccCCCCCcCCCCCceeeeEEEecCCCCCCceE
Q 021291          156 VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTR------------LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVN  223 (314)
Q Consensus       156 ~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~------------~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~  223 (314)
                      |+|..+.+++++| .|+.+.+||+..-...+.            |..      .||    +..+.... |+|+++   ..
T Consensus       324 WSPh~etvLASSg-~D~rl~vWDls~ig~eq~~eda~dgppEllF~H------gGH----~~kV~Dfs-Wnp~eP---W~  388 (422)
T KOG0264|consen  324 WSPHNETVLASSG-TDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIH------GGH----TAKVSDFS-WNPNEP---WT  388 (422)
T ss_pred             eCCCCCceeEecc-cCCcEEEEeccccccccChhhhccCCcceeEEe------cCc----cccccccc-CCCCCC---eE
Confidence            9999999998666 599999999874322211            111      155    55677776 999865   38


Q ss_pred             EEEeecCCcEEEEEcc
Q 021291          224 VLAGYEDGSILVWDIR  239 (314)
Q Consensus       224 l~~g~~dg~i~vwd~~  239 (314)
                      |++.++|+.+.||...
T Consensus       389 I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  389 IASVAEDNILQIWQMA  404 (422)
T ss_pred             EEEecCCceEEEeecc
Confidence            8999999999999986

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=7.3e-22  Score=159.40  Aligned_cols=233  Identities=21%  Similarity=0.348  Sum_probs=170.6

Q ss_pred             eEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCC--------CeEEEEEeccCCcccEEEEEEcccCCCCeEEEe
Q 021291           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ--------HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ   82 (314)
Q Consensus        11 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~   82 (314)
                      -.+++.|.+.|+.++|.|....|++++.||.+++|++++        -+.+.+|++|.++  |.|+++.+  ++..+++|
T Consensus       287 k~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gP--Vl~v~v~~--n~~~~ysg  362 (577)
T KOG0642|consen  287 KFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGP--VLCVVVPS--NGEHCYSG  362 (577)
T ss_pred             eeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCc--eEEEEecC--CceEEEee
Confidence            347889999999999999888999999999999999932        2578899999955  99999999  99999999


Q ss_pred             ecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceecc
Q 021291           83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPA  158 (314)
Q Consensus        83 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  158 (314)
                      +.||+|+.|++....-      .....                              ....+...+.||.+    ++++.
T Consensus       363 g~Dg~I~~w~~p~n~d------p~ds~------------------------------dp~vl~~~l~Ghtdavw~l~~s~  406 (577)
T KOG0642|consen  363 GIDGTIRCWNLPPNQD------PDDSY------------------------------DPSVLSGTLLGHTDAVWLLALSS  406 (577)
T ss_pred             ccCceeeeeccCCCCC------ccccc------------------------------Ccchhccceeccccceeeeeecc
Confidence            9999999998863211      00000                              00112223445544    56777


Q ss_pred             CCCceEEEeecCcCeEEEEecCCCceeeeecccccCCC----------CCcC----------------------------
Q 021291          159 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGS----------PNFS----------------------------  200 (314)
Q Consensus       159 ~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~----------~~h~----------------------------  200 (314)
                      ...+++  +++.||++++|+.....+ .+|..++....          ..|.                            
T Consensus       407 ~~~~Ll--scs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~  483 (577)
T KOG0642|consen  407 TKDRLL--SCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSAS  483 (577)
T ss_pred             ccccee--eecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCC
Confidence            766655  566799999999875544 22221110000          0000                            


Q ss_pred             -C-CCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEE
Q 021291          201 -S-KGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVL  278 (314)
Q Consensus       201 -~-~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~i  278 (314)
                       . .....+..+. ++|..+    +.+++.+|+.|+++|..+ +.++....+|...++++++.|+|.+|++++.|+.+++
T Consensus       484 ~~~~~~~~in~vV-s~~~~~----~~~~~hed~~Ir~~dn~~-~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l  557 (577)
T KOG0642|consen  484 PGPRRYPQINKVV-SHPTAD----ITFTAHEDRSIRFFDNKT-GKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRL  557 (577)
T ss_pred             CcccccCccceEE-ecCCCC----eeEecccCCceecccccc-cccchheeeccceecceeecCCCceEEeecCCceeeh
Confidence             0 0112233444 666632    899999999999999998 9999999999999999999999999999999999999


Q ss_pred             EecCCCeeeEeeee
Q 021291          279 YNLDHSTYVLFGIG  292 (314)
Q Consensus       279 w~~~~~~~~~~~~~  292 (314)
                      |.++...++.-...
T Consensus       558 ~kld~k~~~~es~~  571 (577)
T KOG0642|consen  558 WKLDVKTCVLESTA  571 (577)
T ss_pred             hhccchheeecccc
Confidence            99988877655443

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.89  E-value=1.5e-21  Score=150.46  Aligned_cols=213  Identities=16%  Similarity=0.291  Sum_probs=153.0

Q ss_pred             CCCCceEEecCCCCceeEEEEcc-CCCEEEEecCCCeEEEEeCCCCeEE---EEEeccCCcccEEEEEEcccCCCCeEEE
Q 021291            6 PPPDPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTV---SSSWVHSAAHGIVSVATGPSIGLNKVIS   81 (314)
Q Consensus         6 ~~~~~~~~l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~s   81 (314)
                      ...+|+.++.+|...=.+++||| ....|+||.--+.|++|...++...   ..+.+|.  ..|..|+|+|. ....|++
T Consensus       199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~--~SVEDLqWSpt-E~~vfaS  275 (440)
T KOG0302|consen  199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHT--KSVEDLQWSPT-EDGVFAS  275 (440)
T ss_pred             cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccc--cchhhhccCCc-cCceEEe
Confidence            44579999999999999999999 2336888888889999998887543   3355677  45999999996 4479999


Q ss_pred             eecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCC
Q 021291           82 QGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGP  161 (314)
Q Consensus        82 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (314)
                      ||.||+|+|||++.+....  .+..+.+......                                      ++|+....
T Consensus       276 cS~DgsIrIWDiRs~~~~~--~~~~kAh~sDVNV--------------------------------------ISWnr~~~  315 (440)
T KOG0302|consen  276 CSCDGSIRIWDIRSGPKKA--AVSTKAHNSDVNV--------------------------------------ISWNRREP  315 (440)
T ss_pred             eecCceEEEEEecCCCccc--eeEeeccCCceee--------------------------------------EEccCCcc
Confidence            9999999999999885322  2222222221111                                      44665554


Q ss_pred             ceEEEeecCcCeEEEEecCC---CceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEc
Q 021291          162 KYMAVAGEQLSEVEIWDLNT---AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI  238 (314)
Q Consensus       162 ~~~~~~g~~d~~i~vwd~~~---~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~  238 (314)
                        ++++|+.||+++|||+|+   ++++..|+        -|    +.+|+++. |+|.+..   .|++++.|.+|.+||+
T Consensus       316 --lLasG~DdGt~~iwDLR~~~~~~pVA~fk--------~H----k~pItsie-W~p~e~s---~iaasg~D~QitiWDl  377 (440)
T KOG0302|consen  316 --LLASGGDDGTLSIWDLRQFKSGQPVATFK--------YH----KAPITSIE-WHPHEDS---VIAASGEDNQITIWDL  377 (440)
T ss_pred             --eeeecCCCceEEEEEhhhccCCCcceeEE--------ec----cCCeeEEE-eccccCc---eEEeccCCCcEEEEEe
Confidence              445888899999999985   44667777        45    67899998 9998542   8999999999999998


Q ss_pred             cCCCC---------------ceEeeecC--CcceEEEEEeCCCC-eEEEecCCCcEEEEe
Q 021291          239 RNPGI---------------PLTAMKVH--LEPVLCLSIDESCN-GGISGGADQKIVLYN  280 (314)
Q Consensus       239 ~~~~~---------------~~~~~~~h--~~~v~~~~~~~~~~-~l~s~s~dg~i~iw~  280 (314)
                      .....               |-+.+-.|  ...|..|.|+++-. +|++.+.|| +.||.
T Consensus       378 svE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk  436 (440)
T KOG0302|consen  378 SVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK  436 (440)
T ss_pred             eccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence            53111               11123334  34688899976532 678888898 45553

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.89  E-value=2.1e-22  Score=160.60  Aligned_cols=209  Identities=18%  Similarity=0.251  Sum_probs=167.4

Q ss_pred             CCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCC
Q 021291           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG   97 (314)
Q Consensus        18 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~   97 (314)
                      ..-|.++...|||+.|++|+.-.++.|||+.........+.....-..+.++.+|  |.+..+++..||.|.|||+.+..
T Consensus       465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp--DakvcFsccsdGnI~vwDLhnq~  542 (705)
T KOG0639|consen  465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP--DAKVCFSCCSDGNIAVWDLHNQT  542 (705)
T ss_pred             ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC--ccceeeeeccCCcEEEEEcccce
Confidence            4678999999999999999999999999997654332222222223378899999  99999999999999999999886


Q ss_pred             CCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEE
Q 021291           98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIW  177 (314)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vw  177 (314)
                      +++    .++.+......                                      +.++++|.++.  +|+.|++|+-|
T Consensus       543 ~Vr----qfqGhtDGasc--------------------------------------Idis~dGtklW--TGGlDntvRcW  578 (705)
T KOG0639|consen  543 LVR----QFQGHTDGASC--------------------------------------IDISKDGTKLW--TGGLDNTVRCW  578 (705)
T ss_pred             eee----cccCCCCCcee--------------------------------------EEecCCCceee--cCCCccceeeh
Confidence            655    33332221111                                      56889998877  78899999999


Q ss_pred             ecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEE
Q 021291          178 DLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLC  257 (314)
Q Consensus       178 d~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~  257 (314)
                      |+++++.+.....             .+-|+++. ++|.   +. ++++|-+++.+.|-...  +...+.+.-|.+.|.+
T Consensus       579 DlregrqlqqhdF-------------~SQIfSLg-~cP~---~d-WlavGMens~vevlh~s--kp~kyqlhlheScVLS  638 (705)
T KOG0639|consen  579 DLREGRQLQQHDF-------------SSQIFSLG-YCPT---GD-WLAVGMENSNVEVLHTS--KPEKYQLHLHESCVLS  638 (705)
T ss_pred             hhhhhhhhhhhhh-------------hhhheecc-cCCC---cc-ceeeecccCcEEEEecC--CccceeecccccEEEE
Confidence            9999987765542             45688887 9998   55 99999999999988877  4556778889999999


Q ss_pred             EEEeCCCCeEEEecCCCcEEEEecCCCeeeEeeee
Q 021291          258 LSIDESCNGGISGGADQKIVLYNLDHSTYVLFGIG  292 (314)
Q Consensus       258 ~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~  292 (314)
                      +.|.+.|+++++.+.|+.+..|.+..|..+++..+
T Consensus       639 lKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE  673 (705)
T KOG0639|consen  639 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE  673 (705)
T ss_pred             EEecccCceeeecCchhhhhhccCccccceeeccc
Confidence            99999999999999999999999999999887433

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=1.6e-20  Score=154.70  Aligned_cols=247  Identities=17%  Similarity=0.275  Sum_probs=178.3

Q ss_pred             CCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCe-EEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCC
Q 021291           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN   95 (314)
Q Consensus        17 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~   95 (314)
                      -..+|.++||+.+.+.||.+-.||.|-||++..+= +...+.++.. ..|.+++|++   +..|++.+.+|.|.-||+.+
T Consensus        24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~d-rsIE~L~W~e---~~RLFS~g~sg~i~EwDl~~   99 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPED-RSIESLAWAE---GGRLFSSGLSGSITEWDLHT   99 (691)
T ss_pred             eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCC-CceeeEEEcc---CCeEEeecCCceEEEEeccc
Confidence            35789999999998899999999999999998753 3445556554 6799999996   48899999999999999998


Q ss_pred             CCCCCCCeeeeecceeeEEEeeeeeccccccccCC---CCcceeeccCCceee-ecCCCCCC----ceeccCCCceEEEe
Q 021291           96 GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN---EPKDCYEREVGETVD-TDSLCDSK----DDVPAEGPKYMAVA  167 (314)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~  167 (314)
                      .+.    .+.........  ++++..+.......+   +.........+.... ..+.....    ++|+|++..++  +
T Consensus       100 lk~----~~~~d~~gg~I--Wsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~--~  171 (691)
T KOG2048|consen  100 LKQ----KYNIDSNGGAI--WSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIA--G  171 (691)
T ss_pred             Cce----eEEecCCCcce--eEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEE--e
Confidence            864    33444433332  333333333333333   222222333333222 22322323    88899987655  7


Q ss_pred             ecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEe
Q 021291          168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA  247 (314)
Q Consensus       168 g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~  247 (314)
                      |+.||.|++||..++..+......  ..  +-.......++++. |-.+   +  .|++|...|+|.+||... +..++.
T Consensus       172 Gs~Dg~Iriwd~~~~~t~~~~~~~--~d--~l~k~~~~iVWSv~-~Lrd---~--tI~sgDS~G~V~FWd~~~-gTLiqS  240 (691)
T KOG2048|consen  172 GSIDGVIRIWDVKSGQTLHIITMQ--LD--RLSKREPTIVWSVL-FLRD---S--TIASGDSAGTVTFWDSIF-GTLIQS  240 (691)
T ss_pred             cccCceEEEEEcCCCceEEEeeec--cc--ccccCCceEEEEEE-Eeec---C--cEEEecCCceEEEEcccC-cchhhh
Confidence            888999999999998876632210  00  11122345788888 6644   2  799999999999999998 999999


Q ss_pred             eecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCee
Q 021291          248 MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTY  286 (314)
Q Consensus       248 ~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~  286 (314)
                      +..|...|.+++.++++.++++++.|+.|..+...+.+.
T Consensus       241 ~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~  279 (691)
T KOG2048|consen  241 HSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS  279 (691)
T ss_pred             hhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc
Confidence            999999999999999999999999999999998887755

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.89  E-value=7.1e-21  Score=140.36  Aligned_cols=221  Identities=15%  Similarity=0.191  Sum_probs=163.1

Q ss_pred             CCCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeec-
Q 021291            6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-   84 (314)
Q Consensus         6 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-   84 (314)
                      ..++.+.+++||++.|+|++.+.+.++|+||+.|.++++||+++|+++..++..   .+|..+.|++  ++++++.+.+ 
T Consensus        40 ~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~---~~Vk~~~F~~--~gn~~l~~tD~  114 (327)
T KOG0643|consen   40 LNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTN---SPVKRVDFSF--GGNLILASTDK  114 (327)
T ss_pred             cCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecC---CeeEEEeecc--CCcEEEEEehh
Confidence            356789999999999999999999999999999999999999999999998765   5699999999  8888776654 


Q ss_pred             ----CCeEEEEeCCCCCC---CCCCeeeeecce--eeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC--
Q 021291           85 ----DGTVKCWDIENGGL---SSNPSLTIKTNS--YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--  153 (314)
Q Consensus        85 ----dg~v~iwd~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  153 (314)
                          .+.|.++|++....   ..+|.+.+....  .....+.+.. ......-..+....|+.+.+.........|..  
T Consensus       115 ~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~-~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~I  193 (327)
T KOG0643|consen  115 QMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLG-ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKI  193 (327)
T ss_pred             hcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccC-CEEEEecCCCcEEEEEcccCceeeechhhhcccc
Confidence                46899999984331   223344444433  1222222211 12233445567788899888777666666655  


Q ss_pred             --ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCc--------------------------------
Q 021291          154 --DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNF--------------------------------  199 (314)
Q Consensus       154 --~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h--------------------------------  199 (314)
                        +.++++..+++  +++.|.+-++||.++.+.+.++..++.++..+.                                
T Consensus       194 nd~q~s~d~T~Fi--T~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArF  271 (327)
T KOG0643|consen  194 NDLQFSRDRTYFI--TGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARF  271 (327)
T ss_pred             ccccccCCcceEE--ecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhH
Confidence              99999988665  788999999999999888777764433222111                                


Q ss_pred             -----------CCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEcc
Q 021291          200 -----------SSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR  239 (314)
Q Consensus       200 -----------~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~  239 (314)
                                 -..+-+++.+++ |+|+   |. ..++|++||.|++.-..
T Consensus       272 yh~i~eEEigrvkGHFGPINsvA-fhPd---Gk-sYsSGGEDG~VR~h~Fd  317 (327)
T KOG0643|consen  272 YHLIFEEEIGRVKGHFGPINSVA-FHPD---GK-SYSSGGEDGYVRLHHFD  317 (327)
T ss_pred             HHHHHHHHhccccccccCcceeE-ECCC---Cc-ccccCCCCceEEEEEec
Confidence                       012346788998 9999   55 79999999999997655

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=3.8e-21  Score=144.89  Aligned_cols=226  Identities=16%  Similarity=0.246  Sum_probs=150.3

Q ss_pred             CceEEecCCCCceeEEEEccCCC--EEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKP--ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg   86 (314)
                      ..+..+-.|.+.|+++.|.+.-.  .|++|+.||.|.+|+....+++.++++|.+.  |+.++.+|  .+++-++.+.|+
T Consensus        74 ~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~--Vt~lsiHP--S~KLALsVg~D~  149 (362)
T KOG0294|consen   74 KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQ--VTDLSIHP--SGKLALSVGGDQ  149 (362)
T ss_pred             hhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccc--cceeEecC--CCceEEEEcCCc
Confidence            34566778999999999998654  8999999999999999999999999999966  99999999  888888999999


Q ss_pred             eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEE
Q 021291           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV  166 (314)
Q Consensus        87 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (314)
                      .++.||+-+++.-.  +..+..... ...|.+.+  ............+|.+...............++..+.....++ 
T Consensus       150 ~lr~WNLV~Gr~a~--v~~L~~~at-~v~w~~~G--d~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~-  223 (362)
T KOG0294|consen  150 VLRTWNLVRGRVAF--VLNLKNKAT-LVSWSPQG--DHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELL-  223 (362)
T ss_pred             eeeeehhhcCccce--eeccCCcce-eeEEcCCC--CEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEE-
Confidence            99999998886422  223332222 22333222  1122222233344444333222111111111333333333444 


Q ss_pred             eecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCC----
Q 021291          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG----  242 (314)
Q Consensus       167 ~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~----  242 (314)
                      +|..|+.|.+||..+..+...+.        +|...+.+..    .|..  +++. +|++++.||.|+|||++...    
T Consensus       224 vG~d~~~i~~~D~ds~~~~~~~~--------AH~~RVK~i~----~~~~--~~~~-~lvTaSSDG~I~vWd~~~~~k~~~  288 (362)
T KOG0294|consen  224 VGGDNEWISLKDTDSDTPLTEFL--------AHENRVKDIA----SYTN--PEHE-YLVTASSDGFIKVWDIDMETKKRP  288 (362)
T ss_pred             EecCCceEEEeccCCCccceeee--------cchhheeeeE----EEec--CCce-EEEEeccCceEEEEEccccccCCc
Confidence            46668999999999988888888        8877555432    1221  2244 99999999999999998621    


Q ss_pred             CceEeeecCCcceEEEEE
Q 021291          243 IPLTAMKVHLEPVLCLSI  260 (314)
Q Consensus       243 ~~~~~~~~h~~~v~~~~~  260 (314)
                      .++..+.. ...++|+..
T Consensus       289 ~~l~e~n~-~~RltCl~~  305 (362)
T KOG0294|consen  289 TLLAELNT-NVRLTCLRV  305 (362)
T ss_pred             ceeEEeec-CCccceeee
Confidence            34444443 456666654

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.88  E-value=3.2e-21  Score=153.70  Aligned_cols=218  Identities=15%  Similarity=0.176  Sum_probs=178.9

Q ss_pred             eeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCC
Q 021291           21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSS  100 (314)
Q Consensus        21 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~  100 (314)
                      -.|++......|+++|+..+.|+|||++...+.+.+++|...  |+++.++-  ...+|++++..|.|.|-.+.++....
T Consensus        82 ~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~st--vt~v~YN~--~DeyiAsvs~gGdiiih~~~t~~~tt  157 (673)
T KOG4378|consen   82 AFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQST--VTYVDYNN--TDEYIASVSDGGDIIIHGTKTKQKTT  157 (673)
T ss_pred             HHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcce--eEEEEecC--CcceeEEeccCCcEEEEecccCcccc
Confidence            345555555579999999999999999977788888999954  99999998  77999999999999999999876433


Q ss_pred             CCeeeee-cceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCceEEEeecCcCeEE
Q 021291          101 NPSLTIK-TNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVE  175 (314)
Q Consensus       101 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~  175 (314)
                        .+... ........+++..........+.+.+.+|++............|..    ++|+|.++.+++..| .|..|.
T Consensus       158 --~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG-~Dkki~  234 (673)
T KOG4378|consen  158 --TFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVG-YDKKIN  234 (673)
T ss_pred             --ceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEec-ccceEE
Confidence              33333 2333456677777777788888899999999988888877777777    999999988887555 599999


Q ss_pred             EEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcce
Q 021291          176 IWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPV  255 (314)
Q Consensus       176 vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v  255 (314)
                      +||.+.......+.-             ..+..+++ |.++   |. +|++|...|.|..||++....|+..+.+|...|
T Consensus       235 ~yD~~s~~s~~~l~y-------------~~Plstva-f~~~---G~-~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sV  296 (673)
T KOG4378|consen  235 IYDIRSQASTDRLTY-------------SHPLSTVA-FSEC---GT-YLCAGNSKGELIAYDMRSTKAPVAVRSAHDASV  296 (673)
T ss_pred             Eeecccccccceeee-------------cCCcceee-ecCC---ce-EEEeecCCceEEEEecccCCCCceEeeecccce
Confidence            999998776666652             33677777 9998   55 999999999999999998889999999999999


Q ss_pred             EEEEEeCC
Q 021291          256 LCLSIDES  263 (314)
Q Consensus       256 ~~~~~~~~  263 (314)
                      ++++|-+.
T Consensus       297 t~vafq~s  304 (673)
T KOG4378|consen  297 TRVAFQPS  304 (673)
T ss_pred             eEEEeeec
Confidence            99999654

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.88  E-value=4.2e-21  Score=143.09  Aligned_cols=212  Identities=18%  Similarity=0.250  Sum_probs=154.1

Q ss_pred             EEecCCCCceeEEEEcc-CCCEEEEecCC-------CeEEEEeCCCCe---------EEEEEe-ccCCcccEEEEEEccc
Q 021291           12 AVLRGHRASVTDVCFHQ-TKPILFAGTTG-------GELRIWDTVQHR---------TVSSSW-VHSAAHGIVSVATGPS   73 (314)
Q Consensus        12 ~~l~~h~~~v~~~~~~~-~~~~l~s~~~d-------g~v~iwd~~~~~---------~~~~~~-~~~~~~~v~~~~~~~~   73 (314)
                      ++|..|.++|+.++-+| +.++|+|+..+       -.+.||.+.+..         ++..+. .+-  ..|.|+.|.| 
T Consensus        57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteav--g~i~cvew~P-  133 (370)
T KOG1007|consen   57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAV--GKINCVEWEP-  133 (370)
T ss_pred             hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHh--CceeeEEEcC-
Confidence            45677899999999999 66778877542       247899987532         233333 223  3499999999 


Q ss_pred             CCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC
Q 021291           74 IGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK  153 (314)
Q Consensus        74 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (314)
                       ++..+++-. |..|.+|++.....+.. .+..+........|.  .                                 
T Consensus       134 -ns~klasm~-dn~i~l~~l~ess~~va-ev~ss~s~e~~~~ft--s---------------------------------  175 (370)
T KOG1007|consen  134 -NSDKLASMD-DNNIVLWSLDESSKIVA-EVLSSESAEMRHSFT--S---------------------------------  175 (370)
T ss_pred             -CCCeeEEec-cCceEEEEcccCcchhe-eecccccccccceec--c---------------------------------
Confidence             888998877 78999999988754211 111111000000000  0                                 


Q ss_pred             ceecc--CCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCC
Q 021291          154 DDVPA--EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG  231 (314)
Q Consensus       154 ~~~~~--~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg  231 (314)
                      -+|+|  +++ .+++++  |+++..||+|+..+...+..       +|    ...+..+. |+|+   .+.+|++++.||
T Consensus       176 g~WspHHdgn-qv~tt~--d~tl~~~D~RT~~~~~sI~d-------AH----gq~vrdlD-fNpn---kq~~lvt~gDdg  237 (370)
T KOG1007|consen  176 GAWSPHHDGN-QVATTS--DSTLQFWDLRTMKKNNSIED-------AH----GQRVRDLD-FNPN---KQHILVTCGDDG  237 (370)
T ss_pred             cccCCCCccc-eEEEeC--CCcEEEEEccchhhhcchhh-------hh----cceeeecc-CCCC---ceEEEEEcCCCc
Confidence            35887  343 343333  69999999999888877764       55    34788888 9998   555999999999


Q ss_pred             cEEEEEccCCCCceEeeecCCcceEEEEEeCC-CCeEEEecCCCcEEEEecC
Q 021291          232 SILVWDIRNPGIPLTAMKVHLEPVLCLSIDES-CNGGISGGADQKIVLYNLD  282 (314)
Q Consensus       232 ~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~dg~i~iw~~~  282 (314)
                      .|++||.|....++.++.+|..+|+++.|+|. .++|.|||.|..|.+|...
T Consensus       238 yvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~  289 (370)
T KOG1007|consen  238 YVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCAS  289 (370)
T ss_pred             cEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecc
Confidence            99999999989999999999999999999764 4578999999999999764

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.87  E-value=2.1e-20  Score=144.94  Aligned_cols=208  Identities=19%  Similarity=0.315  Sum_probs=154.6

Q ss_pred             EecCCCCceeEEEEcc-CCCEEEEecCCCeEEEEeCCCC-------eEEEEEeccCCcccEEEEEEcccCCCCeEEEeec
Q 021291           13 VLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQH-------RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (314)
Q Consensus        13 ~l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (314)
                      .+.||+++|..++|+| +...||+||.|.+|.||++..+       +.+..+.+|.  ..|--++|+|. ..+.|++++.
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~--rrVg~V~wHPt-A~NVLlsag~  152 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQ--RRVGLVQWHPT-APNVLLSAGS  152 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecc--eeEEEEeeccc-chhhHhhccC
Confidence            4679999999999999 6779999999999999998764       3567788998  55999999996 4478999999


Q ss_pred             CCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceE
Q 021291           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM  164 (314)
Q Consensus        85 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (314)
                      |.+|.+||+.+++.    ++++. ++...  ++                                    ++|+.+|..+.
T Consensus       153 Dn~v~iWnv~tgea----li~l~-hpd~i--~S------------------------------------~sfn~dGs~l~  189 (472)
T KOG0303|consen  153 DNTVSIWNVGTGEA----LITLD-HPDMV--YS------------------------------------MSFNRDGSLLC  189 (472)
T ss_pred             CceEEEEeccCCce----eeecC-CCCeE--EE------------------------------------EEeccCCceee
Confidence            99999999999975    33444 22111  11                                    55888987543


Q ss_pred             EEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEee---cCCcEEEEEccCC
Q 021291          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY---EDGSILVWDIRNP  241 (314)
Q Consensus       165 ~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~---~dg~i~vwd~~~~  241 (314)
                        +.+.|..|+|||.++++.+..-.        +|.......+   . |--+   |. ++.+|.   .+..+-+||..+.
T Consensus       190 --TtckDKkvRv~dpr~~~~v~e~~--------~heG~k~~Ra---i-fl~~---g~-i~tTGfsr~seRq~aLwdp~nl  251 (472)
T KOG0303|consen  190 --TTCKDKKVRVIDPRRGTVVSEGV--------AHEGAKPARA---I-FLAS---GK-IFTTGFSRMSERQIALWDPNNL  251 (472)
T ss_pred             --eecccceeEEEcCCCCcEeeecc--------cccCCCccee---E-Eecc---Cc-eeeeccccccccceeccCcccc
Confidence              66679999999999999888775        6755333333   2 6555   54 565553   4678999999876


Q ss_pred             CCceE--eeecCCcceEEEEEeCCCCeE-EEecCCCcEEEEecCCCe
Q 021291          242 GIPLT--AMKVHLEPVLCLSIDESCNGG-ISGGADQKIVLYNLDHST  285 (314)
Q Consensus       242 ~~~~~--~~~~h~~~v~~~~~~~~~~~l-~s~s~dg~i~iw~~~~~~  285 (314)
                      .+++.  ++.. +..|.---|+++...+ +.|-.|+.||.|++....
T Consensus       252 ~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  252 EEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             cCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence            66653  3333 4455544558888776 455579999999998766

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.87  E-value=1.6e-19  Score=144.30  Aligned_cols=253  Identities=15%  Similarity=0.140  Sum_probs=167.3

Q ss_pred             EecCC-CCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEE
Q 021291           13 VLRGH-RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW   91 (314)
Q Consensus        13 ~l~~h-~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iw   91 (314)
                      .|+++ ++-|.|++|.++|. ++||..+|.|.||+..+.+..+....|.  ..|.+++...  +|. |++|+.|+.|..|
T Consensus       240 ~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~--ggv~~L~~lr--~Gt-llSGgKDRki~~W  313 (626)
T KOG2106|consen  240 IFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHD--GGVFSLCMLR--DGT-LLSGGKDRKIILW  313 (626)
T ss_pred             ccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecC--CceEEEEEec--Ccc-EeecCccceEEec
Confidence            34443 36799999999884 7899999999999988777776666777  5599999988  754 5569999999999


Q ss_pred             eCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCccee--eccCCceeeecCCCCCC----ceeccCCCceEE
Q 021291           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCY--EREVGETVDTDSLCDSK----DDVPAEGPKYMA  165 (314)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~  165 (314)
                      |-.-.+ .+  ..+++........+.... +.  .........+.  .+...-.  ....+|.+    ++.+|+.+.++ 
T Consensus       314 d~~y~k-~r--~~elPe~~G~iRtv~e~~-~d--i~vGTtrN~iL~Gt~~~~f~--~~v~gh~delwgla~hps~~q~~-  384 (626)
T KOG2106|consen  314 DDNYRK-LR--ETELPEQFGPIRTVAEGK-GD--ILVGTTRNFILQGTLENGFT--LTVQGHGDELWGLATHPSKNQLL-  384 (626)
T ss_pred             cccccc-cc--cccCchhcCCeeEEecCC-Cc--EEEeeccceEEEeeecCCce--EEEEecccceeeEEcCCChhhee-
Confidence            933222 11  122222221111111111 11  01111111111  1111111  12223333    77888876554 


Q ss_pred             EeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCce
Q 021291          166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL  245 (314)
Q Consensus       166 ~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~  245 (314)
                       +++.|+.+++|+  ..++..+..             ....+.++. |+|.   |  .++.|...|...+.|..+ ...+
T Consensus       385 -T~gqdk~v~lW~--~~k~~wt~~-------------~~d~~~~~~-fhps---g--~va~Gt~~G~w~V~d~e~-~~lv  441 (626)
T KOG2106|consen  385 -TCGQDKHVRLWN--DHKLEWTKI-------------IEDPAECAD-FHPS---G--VVAVGTATGRWFVLDTET-QDLV  441 (626)
T ss_pred             -eccCcceEEEcc--CCceeEEEE-------------ecCceeEee-ccCc---c--eEEEeeccceEEEEeccc-ceeE
Confidence             566799999999  444444433             233677777 9997   5  799999999999999997 5555


Q ss_pred             EeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe---------eeeeeecCCCceece
Q 021291          246 TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF---------GIGFVCDQEGNKFGT  304 (314)
Q Consensus       246 ~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~---------~~~~~~~~~~~~~~~  304 (314)
                      ..-.. .++++.++|+|+|.+||.|+.|+.|+||.+......+.         +..+..++++..+.+
T Consensus       442 ~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~  508 (626)
T KOG2106|consen  442 TIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVS  508 (626)
T ss_pred             EEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEe
Confidence            55555 89999999999999999999999999999988776664         233445566555443

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.87  E-value=3.5e-21  Score=145.92  Aligned_cols=247  Identities=16%  Similarity=0.174  Sum_probs=154.6

Q ss_pred             CCCCceEEecCCCCceeEEEEccC-CCEEEEecCCCeEEEEeCCCCeEEEEEe---ccCCcccEEEEEEcccCCCCeEEE
Q 021291            6 PPPDPVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHRTVSSSW---VHSAAHGIVSVATGPSIGLNKVIS   81 (314)
Q Consensus         6 ~~~~~~~~l~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~s   81 (314)
                      ...++...+.||...|+.+.|.|+ .++++++|.|..||+|++++..++..+-   +|.  +.|.++.|++  ++.+|++
T Consensus       123 ~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHr--deVLSvD~~~--~gd~i~S  198 (385)
T KOG1034|consen  123 VSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHR--DEVLSVDFSL--DGDRIAS  198 (385)
T ss_pred             chhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEeccccccc--CcEEEEEEcC--CCCeeec
Confidence            345677889999999999999994 5799999999999999999999998874   576  4499999999  9999999


Q ss_pred             eecCCeEEEEeCCCCCCCCCCee--eeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC--ceec
Q 021291           82 QGRDGTVKCWDIENGGLSSNPSL--TIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVP  157 (314)
Q Consensus        82 ~~~dg~v~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  157 (314)
                      ++.|.+|++|++...+.......  ........ ..|-......                   .......-|..  -+.-
T Consensus       199 cGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~-~pfpt~~~~f-------------------p~fst~diHrnyVDCvr  258 (385)
T KOG1034|consen  199 CGMDHSLKLWRLNVKEFKNKLELSITYSPNKTT-RPFPTPKTHF-------------------PDFSTTDIHRNYVDCVR  258 (385)
T ss_pred             cCCcceEEEEecChhHHhhhhhhhcccCCCCcc-CcCCcccccc-------------------ccccccccccchHHHHH
Confidence            99999999999986543221000  00000000 0000000000                   00001111222  1111


Q ss_pred             cCCCceEEEeecCcCeEEEEec-CCCceeeeecccc-cCCCCCcCCCCCceeeeEE-EecCCCCCCceEEEEeecCCcEE
Q 021291          158 AEGPKYMAVAGEQLSEVEIWDL-NTAERCTRLHQNS-CGGSPNFSSKGRGMCMAVQ-AYLPSKSQGFVNVLAGYEDGSIL  234 (314)
Q Consensus       158 ~~~~~~~~~~g~~d~~i~vwd~-~~~~~~~~~~~~~-~~~~~~h~~~~~~~~~~~~-~~~p~~~~g~~~l~~g~~dg~i~  234 (314)
                      --|+.++  +-+.++.|..|-. +-.+.+...+.+. .....++-......++-+. +|.|.   ++ .|+.|.+.|.|+
T Consensus       259 w~gd~il--SkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~---~~-~la~gnq~g~v~  332 (385)
T KOG1034|consen  259 WFGDFIL--SKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPW---QK-MLALGNQSGKVY  332 (385)
T ss_pred             HHhhhee--ecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHH---HH-HHhhccCCCcEE
Confidence            2344443  4555789999987 3333322221111 0111122222233344443 25554   44 899999999999


Q ss_pred             EEEccCCCCce-Eeee--cCCcceEEEEEeCCCCeEEEecCCCcEEEEecC
Q 021291          235 VWDIRNPGIPL-TAMK--VHLEPVLCLSIDESCNGGISGGADQKIVLYNLD  282 (314)
Q Consensus       235 vwd~~~~~~~~-~~~~--~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~  282 (314)
                      +||+++...+. .++.  .....|...+|+.++.+|+..+.|++|--||.-
T Consensus       333 vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  333 VWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             EEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            99999733322 2222  224579999999999999999999999999854

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=1.3e-19  Score=136.30  Aligned_cols=228  Identities=12%  Similarity=0.173  Sum_probs=152.5

Q ss_pred             ceEEecCCCCceeEEEEcc--CCCEEEEecCCCeEEEEeCCCC---------eEEEEEeccCCcccEEEEEEcccCCCCe
Q 021291           10 PVAVLRGHRASVTDVCFHQ--TKPILFAGTTGGELRIWDTVQH---------RTVSSSWVHSAAHGIVSVATGPSIGLNK   78 (314)
Q Consensus        10 ~~~~l~~h~~~v~~~~~~~--~~~~l~s~~~dg~v~iwd~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~~~   78 (314)
                      +....+.|.+.|..+.|.+  -|+.+|+++.|++++||.-...         ....++....  ..|+.+.|.|..-|-.
T Consensus        51 ~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~Dsr--ssV~DV~FaP~hlGLk  128 (361)
T KOG2445|consen   51 CTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSR--SSVTDVKFAPKHLGLK  128 (361)
T ss_pred             EeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCC--cceeEEEecchhcceE
Confidence            4556778999999999987  6899999999999999985211         2334455555  4499999999767788


Q ss_pred             EEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC---ce
Q 021291           79 VISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK---DD  155 (314)
Q Consensus        79 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  155 (314)
                      |++++.||+|+||+.-..--..  ..++...-.. . ..+.+                            ..+..   +.
T Consensus       129 lA~~~aDG~lRIYEA~dp~nLs--~W~Lq~Ei~~-~-~~pp~----------------------------~~~~~~~Cvs  176 (361)
T KOG2445|consen  129 LAAASADGILRIYEAPDPMNLS--QWTLQHEIQN-V-IDPPG----------------------------KNKQPCFCVS  176 (361)
T ss_pred             EEEeccCcEEEEEecCCccccc--cchhhhhhhh-c-cCCcc----------------------------cccCcceEEe
Confidence            9999999999999875432111  0111100000 0 00000                            00000   34


Q ss_pred             eccCC--CceEEEeecCc-----CeEEEEecCCCc----eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEE
Q 021291          156 VPAEG--PKYMAVAGEQL-----SEVEIWDLNTAE----RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNV  224 (314)
Q Consensus       156 ~~~~~--~~~~~~~g~~d-----~~i~vwd~~~~~----~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l  224 (314)
                      |+|..  +.+++ .|+.+     +.++||......    .+..+.        +|    ..++..+. |.|+-.....+|
T Consensus       177 Wn~sr~~~p~iA-vgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~--------d~----~dpI~di~-wAPn~Gr~y~~l  242 (361)
T KOG2445|consen  177 WNPSRMHEPLIA-VGSDEDAPHLNKVKIYEYNENGRKWLKVAELP--------DH----TDPIRDIS-WAPNIGRSYHLL  242 (361)
T ss_pred             eccccccCceEE-EEcccCCccccceEEEEecCCcceeeeehhcC--------CC----CCcceeee-eccccCCceeeE
Confidence            54332  33444 45533     378888765433    233333        45    55788887 999843333478


Q ss_pred             EEeecCCcEEEEEccCCC-------------------CceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCe
Q 021291          225 LAGYEDGSILVWDIRNPG-------------------IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST  285 (314)
Q Consensus       225 ~~g~~dg~i~vwd~~~~~-------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~  285 (314)
                      ++++.|| |+||.++...                   +.+..+..|...|+.+.|+-.|..|++.|.||+||+|...-..
T Consensus       243 AvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n  321 (361)
T KOG2445|consen  243 AVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNN  321 (361)
T ss_pred             EEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhh
Confidence            9999999 9999987311                   1345577999999999999999999999999999999876554


Q ss_pred             e
Q 021291          286 Y  286 (314)
Q Consensus       286 ~  286 (314)
                      +
T Consensus       322 ~  322 (361)
T KOG2445|consen  322 L  322 (361)
T ss_pred             h
Confidence            3

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.87  E-value=7.8e-19  Score=142.45  Aligned_cols=248  Identities=9%  Similarity=0.082  Sum_probs=158.5

Q ss_pred             CCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeE-EEeecCCeEEEEeCCCCCCCCCCeeeeec
Q 021291           30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKV-ISQGRDGTVKCWDIENGGLSSNPSLTIKT  108 (314)
Q Consensus        30 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~  108 (314)
                      ++.+++++.|+.|++||+.+++.+..+..+.   .+.+++|+|  +++.+ ++++.++.|++||..+++...  .+....
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~---~~~~l~~~~--dg~~l~~~~~~~~~v~~~d~~~~~~~~--~~~~~~   73 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ---RPRGITLSK--DGKLLYVCASDSDTIQVIDLATGEVIG--TLPSGP   73 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEECCC---CCCceEECC--CCCEEEEEECCCCeEEEEECCCCcEEE--eccCCC
Confidence            3578899999999999999999888887653   267899999  88876 567789999999999876533  111111


Q ss_pred             ceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCC--CCceeccCCCceEEEeecCcCeEEEEecCCCceee
Q 021291          109 NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCD--SKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCT  186 (314)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~  186 (314)
                       ......+++................+|++...........+.  ..++|+|+++.+++ +...+..+.+||.++++...
T Consensus        74 -~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~-~~~~~~~~~~~d~~~~~~~~  151 (300)
T TIGR03866        74 -DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVN-TSETTNMAHFIDTKTYEIVD  151 (300)
T ss_pred             -CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEE-EecCCCeEEEEeCCCCeEEE
Confidence             112222333322222222234566777776654333222122  12899999986554 33323467788998877665


Q ss_pred             eecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCC-----c--ceEEEE
Q 021291          187 RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL-----E--PVLCLS  259 (314)
Q Consensus       187 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~-----~--~v~~~~  259 (314)
                      .+..       +      .....+. |+|+   ++.+++++..++.|++||+++ ++.+..+..+.     .  ....++
T Consensus       152 ~~~~-------~------~~~~~~~-~s~d---g~~l~~~~~~~~~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~i~  213 (300)
T TIGR03866       152 NVLV-------D------QRPRFAE-FTAD---GKELWVSSEIGGTVSVIDVAT-RKVIKKITFEIPGVHPEAVQPVGIK  213 (300)
T ss_pred             EEEc-------C------CCccEEE-ECCC---CCEEEEEcCCCCEEEEEEcCc-ceeeeeeeecccccccccCCccceE
Confidence            4431       1      1234455 9998   553445666799999999997 66666554321     1  234688


Q ss_pred             EeCCCCeEEE-ecCCCcEEEEecCCCeeeEe------eeeeeecCCCceece
Q 021291          260 IDESCNGGIS-GGADQKIVLYNLDHSTYVLF------GIGFVCDQEGNKFGT  304 (314)
Q Consensus       260 ~~~~~~~l~s-~s~dg~i~iw~~~~~~~~~~------~~~~~~~~~~~~~~~  304 (314)
                      |++++++++. .+.++.+.+||+++++.+..      ...++++|+|..+..
T Consensus       214 ~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~  265 (300)
T TIGR03866       214 LTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLT  265 (300)
T ss_pred             ECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEE
Confidence            9999997544 45567899999998776543      233567777776543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=7.3e-21  Score=150.31  Aligned_cols=204  Identities=19%  Similarity=0.213  Sum_probs=149.5

Q ss_pred             CCCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCC---------CeEEEEEeccCCcccEEEEEEcccCCC
Q 021291            6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ---------HRTVSSSWVHSAAHGIVSVATGPSIGL   76 (314)
Q Consensus         6 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~   76 (314)
                      ..++++..+.+|=..|+|+.|+.||.+|+|||.||.|.+|.+.+         -+.+..+..|.  -+|+++...+..-.
T Consensus       111 ssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Ht--lsITDl~ig~Gg~~  188 (476)
T KOG0646|consen  111 SSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHT--LSITDLQIGSGGTN  188 (476)
T ss_pred             ccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCc--ceeEEEEecCCCcc
Confidence            34677778889999999999999999999999999999998642         35677888888  44999998773234


Q ss_pred             CeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCcee
Q 021291           77 NKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDV  156 (314)
Q Consensus        77 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (314)
                      .+++|+|.|.++++||+..+.++.    ++.......+                                       +++
T Consensus       189 ~rl~TaS~D~t~k~wdlS~g~LLl----ti~fp~si~a---------------------------------------v~l  225 (476)
T KOG0646|consen  189 ARLYTASEDRTIKLWDLSLGVLLL----TITFPSSIKA---------------------------------------VAL  225 (476)
T ss_pred             ceEEEecCCceEEEEEeccceeeE----EEecCCccee---------------------------------------EEE
Confidence            689999999999999999987643    2222211111                                       446


Q ss_pred             ccCCCceEEEeecCcCeEEEEecCCCce--------eeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEee
Q 021291          157 PAEGPKYMAVAGEQLSEVEIWDLNTAER--------CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY  228 (314)
Q Consensus       157 ~~~~~~~~~~~g~~d~~i~vwd~~~~~~--------~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~  228 (314)
                      +|.+..++  .|+.+|.|.+.++.....        .............||..+  ..++|++ ++-|   |. +|++|+
T Consensus       226 Dpae~~~y--iGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~--~~ITcLa-is~D---gt-lLlSGd  296 (476)
T KOG0646|consen  226 DPAERVVY--IGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENE--SAITCLA-ISTD---GT-LLLSGD  296 (476)
T ss_pred             cccccEEE--ecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCC--cceeEEE-EecC---cc-EEEeeC
Confidence            67766555  577899999887754321        000111111122366542  4778887 8887   44 999999


Q ss_pred             cCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCC
Q 021291          229 EDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESC  264 (314)
Q Consensus       229 ~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~  264 (314)
                      .||.|.|||+.+ .++++++....++|+.+.+.|-.
T Consensus       297 ~dg~VcvWdi~S-~Q~iRtl~~~kgpVtnL~i~~~~  331 (476)
T KOG0646|consen  297 EDGKVCVWDIYS-KQCIRTLQTSKGPVTNLQINPLE  331 (476)
T ss_pred             CCCCEEEEecch-HHHHHHHhhhccccceeEeeccc
Confidence            999999999998 88888887678899999985543

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.87  E-value=3.6e-21  Score=153.69  Aligned_cols=200  Identities=19%  Similarity=0.313  Sum_probs=160.6

Q ss_pred             EecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEe
Q 021291           13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD   92 (314)
Q Consensus        13 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd   92 (314)
                      .|..-.-.+.+++.+||.+..+++..||.|.|||+.+...++.|++|.  +.+.||.+++  +|..|.+|+-|.+|+.||
T Consensus       504 eltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGht--DGascIdis~--dGtklWTGGlDntvRcWD  579 (705)
T KOG0639|consen  504 ELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT--DGASCIDISK--DGTKLWTGGLDNTVRCWD  579 (705)
T ss_pred             hcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCC--CCceeEEecC--CCceeecCCCccceeehh
Confidence            444444567889999999999999999999999999999999999999  5599999999  999999999999999999


Q ss_pred             CCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcC
Q 021291           93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS  172 (314)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~  172 (314)
                      ++++....+       +......|+                                    +..+|.++.++  .|-.++
T Consensus       580 lregrqlqq-------hdF~SQIfS------------------------------------Lg~cP~~dWla--vGMens  614 (705)
T KOG0639|consen  580 LREGRQLQQ-------HDFSSQIFS------------------------------------LGYCPTGDWLA--VGMENS  614 (705)
T ss_pred             hhhhhhhhh-------hhhhhhhee------------------------------------cccCCCcccee--eecccC
Confidence            999875442       111112222                                    34678887654  477788


Q ss_pred             eEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCC
Q 021291          173 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL  252 (314)
Q Consensus       173 ~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~  252 (314)
                      .+.|......+. ..+.        -|    .+.+.++. |.+.   |+ ++++.+.|..+..|.+.. +..+...+. .
T Consensus       615 ~vevlh~skp~k-yqlh--------lh----eScVLSlK-Fa~c---Gk-wfvStGkDnlLnawrtPy-GasiFqskE-~  674 (705)
T KOG0639|consen  615 NVEVLHTSKPEK-YQLH--------LH----ESCVLSLK-FAYC---GK-WFVSTGKDNLLNAWRTPY-GASIFQSKE-S  674 (705)
T ss_pred             cEEEEecCCccc-eeec--------cc----ccEEEEEE-eccc---Cc-eeeecCchhhhhhccCcc-ccceeeccc-c
Confidence            888887765443 3333        23    66899998 9998   66 999999999999999987 666665553 6


Q ss_pred             cceEEEEEeCCCCeEEEecCCCcEEEEec
Q 021291          253 EPVLCLSIDESCNGGISGGADQKIVLYNL  281 (314)
Q Consensus       253 ~~v~~~~~~~~~~~l~s~s~dg~i~iw~~  281 (314)
                      +.|.++.++.|.++|+|||.|++..||.+
T Consensus       675 SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  675 SSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             CcceeeeeccCceEEEecCCCcceEEEEE
Confidence            78999999999999999999999998876

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=6.7e-20  Score=144.80  Aligned_cols=222  Identities=16%  Similarity=0.224  Sum_probs=164.1

Q ss_pred             CCceeEEEEccCCCEEEEecCCCeEEEEeCCCC--eEEEEEeccCCcccEEEEEEcccCCCC-eEEEeecCCeEEEEeCC
Q 021291           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQH--RTVSSSWVHSAAHGIVSVATGPSIGLN-KVISQGRDGTVKCWDIE   94 (314)
Q Consensus        18 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~v~iwd~~   94 (314)
                      .+.|+++.|+|...+|++|+.||+++||.++..  ..++.+....  .+|.+.+|.|  +|. .+++++.-..+..||+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~--fPi~~a~f~p--~G~~~i~~s~rrky~ysyDle  288 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEK--FPIQKAEFAP--NGHSVIFTSGRRKYLYSYDLE  288 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeecc--CccceeeecC--CCceEEEecccceEEEEeecc
Confidence            468999999999999999999999999998643  3555555555  4599999999  888 89999999999999999


Q ss_pred             CCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeE
Q 021291           95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEV  174 (314)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i  174 (314)
                      +.+..+  +...........  .                                   ...++++++.++ ..| ..|.|
T Consensus       289 ~ak~~k--~~~~~g~e~~~~--e-----------------------------------~FeVShd~~fia-~~G-~~G~I  327 (514)
T KOG2055|consen  289 TAKVTK--LKPPYGVEEKSM--E-----------------------------------RFEVSHDSNFIA-IAG-NNGHI  327 (514)
T ss_pred             cccccc--ccCCCCcccchh--h-----------------------------------eeEecCCCCeEE-Ecc-cCceE
Confidence            887543  111111110000  0                                   044778887544 345 47999


Q ss_pred             EEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCc-
Q 021291          175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE-  253 (314)
Q Consensus       175 ~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~-  253 (314)
                      .+....+++.+.+++             ..+.+..+. |+.+   ++ .|++.+.+|.|++||++. ..+++.+....+ 
T Consensus       328 ~lLhakT~eli~s~K-------------ieG~v~~~~-fsSd---sk-~l~~~~~~GeV~v~nl~~-~~~~~rf~D~G~v  388 (514)
T KOG2055|consen  328 HLLHAKTKELITSFK-------------IEGVVSDFT-FSSD---SK-ELLASGGTGEVYVWNLRQ-NSCLHRFVDDGSV  388 (514)
T ss_pred             Eeehhhhhhhhheee-------------eccEEeeEE-EecC---Cc-EEEEEcCCceEEEEecCC-cceEEEEeecCcc
Confidence            999999999999988             467888887 9976   55 677777889999999998 677777764222 


Q ss_pred             ceEEEEEeCCCCeEEEecCCCcEEEEecCCC------eeeE-------eeeeeeecCCCceec
Q 021291          254 PVLCLSIDESCNGGISGGADQKIVLYNLDHS------TYVL-------FGIGFVCDQEGNKFG  303 (314)
Q Consensus       254 ~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~------~~~~-------~~~~~~~~~~~~~~~  303 (314)
                      .-++++.+.++.+||+||..|.|.|||.++.      +.+.       .+..+.+.+++.+++
T Consensus       389 ~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLA  451 (514)
T KOG2055|consen  389 HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILA  451 (514)
T ss_pred             ceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhh
Confidence            3456777899999999999999999996533      2222       244455666665554

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=1.5e-21  Score=169.52  Aligned_cols=219  Identities=17%  Similarity=0.238  Sum_probs=168.4

Q ss_pred             CceEEecCCCCceeEEEEcc-CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCe
Q 021291            9 DPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (314)
                      ..+.+++.|++.|..+.|++ .+++||+|+.||.|.|||+.+-+...........+.|.+++|+.. ..+.|++++.+|.
T Consensus       107 ~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrk-vqhILAS~s~sg~  185 (1049)
T KOG0307|consen  107 EVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRK-VSHILASGSPSGR  185 (1049)
T ss_pred             HHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchh-hhHHhhccCCCCC
Confidence            46778889999999999999 566999999999999999987655544432223356999999974 4478899999999


Q ss_pred             EEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEe
Q 021291           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA  167 (314)
Q Consensus        88 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (314)
                      +.|||++..+.    ++.+...... +.++.                                   ++|+|++..-++++
T Consensus       186 ~~iWDlr~~~p----ii~ls~~~~~-~~~S~-----------------------------------l~WhP~~aTql~~A  225 (1049)
T KOG0307|consen  186 AVIWDLRKKKP----IIKLSDTPGR-MHCSV-----------------------------------LAWHPDHATQLLVA  225 (1049)
T ss_pred             ceeccccCCCc----ccccccCCCc-cceee-----------------------------------eeeCCCCceeeeee
Confidence            99999998754    3344333322 11111                                   67999987666655


Q ss_pred             ecCcC--eEEEEecCCCc-eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCc
Q 021291          168 GEQLS--EVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (314)
Q Consensus       168 g~~d~--~i~vwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~  244 (314)
                      ...|+  .|.+||+|... .++.+.        +|    ...+.++. |++.++  + ++++++.|+.|.+|+..+ ++.
T Consensus       226 s~dd~~PviqlWDlR~assP~k~~~--------~H----~~Gilsls-Wc~~D~--~-lllSsgkD~~ii~wN~~t-gEv  288 (1049)
T KOG0307|consen  226 SGDDSAPVIQLWDLRFASSPLKILE--------GH----QRGILSLS-WCPQDP--R-LLLSSGKDNRIICWNPNT-GEV  288 (1049)
T ss_pred             cCCCCCceeEeecccccCCchhhhc--------cc----ccceeeec-cCCCCc--h-hhhcccCCCCeeEecCCC-ceE
Confidence            44443  69999998544 455555        67    34678887 998733  3 899999999999999999 999


Q ss_pred             eEeeecCCcceEEEEEeCCCC-eEEEecCCCcEEEEecCCCe
Q 021291          245 LTAMKVHLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHST  285 (314)
Q Consensus       245 ~~~~~~h~~~v~~~~~~~~~~-~l~s~s~dg~i~iw~~~~~~  285 (314)
                      +..+....+++..+.|.|... .++.++.||.|.|+.+....
T Consensus       289 l~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  289 LGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             eeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            999998889999999987665 67888999999999988665

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.86  E-value=1.5e-19  Score=136.94  Aligned_cols=233  Identities=18%  Similarity=0.226  Sum_probs=170.7

Q ss_pred             CCceeEEEEc-------cCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCccc---EEEEEEcccCCCCeEEEeecCCe
Q 021291           18 RASVTDVCFH-------QTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHG---IVSVATGPSIGLNKVISQGRDGT   87 (314)
Q Consensus        18 ~~~v~~~~~~-------~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~~l~s~~~dg~   87 (314)
                      ...|...+|-       |+..++|+.+.|.-|++||.-+|+....+++..+.+.   ..+++|+|  ||.+|++|. ...
T Consensus       104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~--DGeqlfaGy-krc  180 (406)
T KOG2919|consen  104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSP--DGEQLFAGY-KRC  180 (406)
T ss_pred             CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecC--CCCeEeecc-cce
Confidence            3567777775       5667999999999999999999999988876543232   46899999  999998876 569


Q ss_pred             EEEEeC-CCCCCCCCCeeeeecc-ee-eEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceE
Q 021291           88 VKCWDI-ENGGLSSNPSLTIKTN-SY-HFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM  164 (314)
Q Consensus        88 v~iwd~-~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (314)
                      |+++|+ +.+....  .+..... .. ....++.                                   ++|+|.....+
T Consensus       181 irvFdt~RpGr~c~--vy~t~~~~k~gq~giisc-----------------------------------~a~sP~~~~~~  223 (406)
T KOG2919|consen  181 IRVFDTSRPGRDCP--VYTTVTKGKFGQKGIISC-----------------------------------FAFSPMDSKTL  223 (406)
T ss_pred             EEEeeccCCCCCCc--chhhhhcccccccceeee-----------------------------------eeccCCCCcce
Confidence            999999 5543221  1111111 00 0000000                                   56888887677


Q ss_pred             EEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEee-cCCcEEEEEccCCCC
Q 021291          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-EDGSILVWDIRNPGI  243 (314)
Q Consensus       165 ~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~-~dg~i~vwd~~~~~~  243 (314)
                      + .|+....+-||.-..+.++..+-        +|    .+-++.+. |.++   |+ .|++|. .|-.|..||+|....
T Consensus       224 a-~gsY~q~~giy~~~~~~pl~llg--------gh----~gGvThL~-~~ed---Gn-~lfsGaRk~dkIl~WDiR~~~~  285 (406)
T KOG2919|consen  224 A-VGSYGQRVGIYNDDGRRPLQLLG--------GH----GGGVTHLQ-WCED---GN-KLFSGARKDDKILCWDIRYSRD  285 (406)
T ss_pred             e-eecccceeeeEecCCCCceeeec--------cc----CCCeeeEE-eccC---cC-eecccccCCCeEEEEeehhccc
Confidence            6 57777889999888888888776        66    55788887 9998   55 566665 477899999999889


Q ss_pred             ceEeeecCCc-ceEEEEE--eCCCCeEEEecCCCcEEEEecCC-CeeeE-------eeeeeeecCCCceeceeecc
Q 021291          244 PLTAMKVHLE-PVLCLSI--DESCNGGISGGADQKIVLYNLDH-STYVL-------FGIGFVCDQEGNKFGTTWHI  308 (314)
Q Consensus       244 ~~~~~~~h~~-~v~~~~~--~~~~~~l~s~s~dg~i~iw~~~~-~~~~~-------~~~~~~~~~~~~~~~~~w~~  308 (314)
                      ++..+..|.+ .-..|-|  +|++++|++|+.||.|++||++. +..+.       ...+++.+|.-.++++.-.-
T Consensus       286 pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  286 PVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             hhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence            9999999877 4455666  79999999999999999999988 43222       35777888887777775443

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=2e-19  Score=153.09  Aligned_cols=204  Identities=17%  Similarity=0.222  Sum_probs=150.5

Q ss_pred             EecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEe
Q 021291           13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD   92 (314)
Q Consensus        13 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd   92 (314)
                      .|...+-++++++|+.+|+++|.||.|-.|++-+..+......+++|..+  |.++.|+|  ++++|++.+-||+|++||
T Consensus        91 iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~ap--Vl~l~~~p--~~~fLAvss~dG~v~iw~  166 (933)
T KOG1274|consen   91 ILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAP--VLQLSYDP--KGNFLAVSSCDGKVQIWD  166 (933)
T ss_pred             eeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCc--eeeeeEcC--CCCEEEEEecCceEEEEE
Confidence            33445678999999999999999999999999999999999999999955  99999999  999999999999999999


Q ss_pred             CCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcC
Q 021291           93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS  172 (314)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~  172 (314)
                      +.++.+..    .+...........                       .+.       ...++|+|++..+++. +. |+
T Consensus       167 ~~~~~~~~----tl~~v~k~n~~~~-----------------------s~i-------~~~~aW~Pk~g~la~~-~~-d~  210 (933)
T KOG1274|consen  167 LQDGILSK----TLTGVDKDNEFIL-----------------------SRI-------CTRLAWHPKGGTLAVP-PV-DN  210 (933)
T ss_pred             cccchhhh----hcccCCccccccc-----------------------cce-------eeeeeecCCCCeEEee-cc-CC
Confidence            99987644    2111110000000                       000       0006799998777653 43 79


Q ss_pred             eEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCC
Q 021291          173 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL  252 (314)
Q Consensus       173 ~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~  252 (314)
                      .|++|+..+.+....+...       +   .......++ |+|+   |. |||+++.||.|.|||.++ -..    ....
T Consensus       211 ~Vkvy~r~~we~~f~Lr~~-------~---~ss~~~~~~-wsPn---G~-YiAAs~~~g~I~vWnv~t-~~~----~~~~  270 (933)
T KOG1274|consen  211 TVKVYSRKGWELQFKLRDK-------L---SSSKFSDLQ-WSPN---GK-YIAASTLDGQILVWNVDT-HER----HEFK  270 (933)
T ss_pred             eEEEEccCCceeheeeccc-------c---cccceEEEE-EcCC---Cc-EEeeeccCCcEEEEeccc-chh----cccc
Confidence            9999999999988887742       2   222356666 9999   66 999999999999999996 111    2235


Q ss_pred             cceEEEEEeCCCCeEEEecCCCcE
Q 021291          253 EPVLCLSIDESCNGGISGGADQKI  276 (314)
Q Consensus       253 ~~v~~~~~~~~~~~l~s~s~dg~i  276 (314)
                      ..|.+++|.|++.-+-.-...|..
T Consensus       271 ~~Vc~~aw~p~~n~it~~~~~g~~  294 (933)
T KOG1274|consen  271 RAVCCEAWKPNANAITLITALGTL  294 (933)
T ss_pred             ceeEEEecCCCCCeeEEEeecccc
Confidence            689999998887755333333333

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.85  E-value=2.8e-19  Score=133.47  Aligned_cols=214  Identities=17%  Similarity=0.180  Sum_probs=153.3

Q ss_pred             CceEEec-CCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeE-EEEEeccC---CcccEEEEEEcccCCCCeEEEee
Q 021291            9 DPVAVLR-GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT-VSSSWVHS---AAHGIVSVATGPSIGLNKVISQG   83 (314)
Q Consensus         9 ~~~~~l~-~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-~~~~~~~~---~~~~v~~~~~~~~~~~~~l~s~~   83 (314)
                      +.+..|. .|-+.|.|+.|.|++..+++-. |..|.+|+++.+.. .+.+....   .....++-+|+|..+++.+++.+
T Consensus       113 E~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~  191 (370)
T KOG1007|consen  113 ECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS  191 (370)
T ss_pred             hHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC
Confidence            4455555 5667999999999999988766 77899999988765 33332211   11337888999977888888866


Q ss_pred             cCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCce
Q 021291           84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY  163 (314)
Q Consensus        84 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (314)
                       |+++..||+++..+..    .+..... .....                                    +.|+|+-+++
T Consensus       192 -d~tl~~~D~RT~~~~~----sI~dAHg-q~vrd------------------------------------lDfNpnkq~~  229 (370)
T KOG1007|consen  192 -DSTLQFWDLRTMKKNN----SIEDAHG-QRVRD------------------------------------LDFNPNKQHI  229 (370)
T ss_pred             -CCcEEEEEccchhhhc----chhhhhc-ceeee------------------------------------ccCCCCceEE
Confidence             7899999999876532    1111100 00001                                    5688988888


Q ss_pred             EEEeecCcCeEEEEecCCCc-eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCC-
Q 021291          164 MAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP-  241 (314)
Q Consensus       164 ~~~~g~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~-  241 (314)
                      ++ +++.||.|++||.|..+ ++..+.        +|    ...++++. |+|..  .+ ++++|+.|..|.+|..... 
T Consensus       230 lv-t~gDdgyvriWD~R~tk~pv~el~--------~H----sHWvW~VR-fn~~h--dq-LiLs~~SDs~V~Lsca~svS  292 (370)
T KOG1007|consen  230 LV-TCGDDGYVRIWDTRKTKFPVQELP--------GH----SHWVWAVR-FNPEH--DQ-LILSGGSDSAVNLSCASSVS  292 (370)
T ss_pred             EE-EcCCCccEEEEeccCCCccccccC--------CC----ceEEEEEE-ecCcc--ce-EEEecCCCceeEEEeccccc
Confidence            77 55669999999999654 555565        56    45899998 99973  33 8999999999999965321 


Q ss_pred             ---------------------------CCceEeeecCCcceEEEEEeC-CCCeEEEecCCCcEEEEecC
Q 021291          242 ---------------------------GIPLTAMKVHLEPVLCLSIDE-SCNGGISGGADQKIVLYNLD  282 (314)
Q Consensus       242 ---------------------------~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~i~iw~~~  282 (314)
                                                 ...+.++..|.+.|.+++|+. +-=.+|+-|.||.+.|=.+.
T Consensus       293 SE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  293 SEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             cccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence                                       113456778999999999954 44457999999999887665

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.84  E-value=7e-19  Score=146.41  Aligned_cols=264  Identities=13%  Similarity=0.139  Sum_probs=178.2

Q ss_pred             EEecCCCCceeEEEEccC-----------CCEEEEecCCCeEEEEeCCCCeEEEEEe-----------------------
Q 021291           12 AVLRGHRASVTDVCFHQT-----------KPILFAGTTGGELRIWDTVQHRTVSSSW-----------------------   57 (314)
Q Consensus        12 ~~l~~h~~~v~~~~~~~~-----------~~~l~s~~~dg~v~iwd~~~~~~~~~~~-----------------------   57 (314)
                      ..+--|...|+.+.--|-           ...+.|++.|++||+||++.+..-..++                       
T Consensus       363 ~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d  442 (1080)
T KOG1408|consen  363 SSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHD  442 (1080)
T ss_pred             eeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhh
Confidence            344458888888776551           1258999999999999987521100000                       


Q ss_pred             ------------ccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeec--cc
Q 021291           58 ------------VHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKE--PY  123 (314)
Q Consensus        58 ------------~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  123 (314)
                                  .......+.+++.+|  ++++|++|..-|+|+|||+...+...  .++.+........++...-  ..
T Consensus       443 ~~~~~fdka~~s~~d~r~G~R~~~vSp--~gqhLAsGDr~GnlrVy~Lq~l~~~~--~~eAHesEilcLeyS~p~~~~kL  518 (1080)
T KOG1408|consen  443 ASAGIFDKALVSTCDSRFGFRALAVSP--DGQHLASGDRGGNLRVYDLQELEYTC--FMEAHESEILCLEYSFPVLTNKL  518 (1080)
T ss_pred             ccCCcccccchhhcCcccceEEEEECC--CcceecccCccCceEEEEehhhhhhh--heecccceeEEEeecCchhhhHh
Confidence                        011113589999999  99999999999999999998776533  2333333333333332211  11


Q ss_pred             cccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCC-ceEEEeecCcCeEEEEecCCCceeeeecccccCCCCC
Q 021291          124 ANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGP-KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPN  198 (314)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~  198 (314)
                      ......+....++++.....+...+.+|..    +.|...|- .-++ +++.|+.|.+--.+.......+..       +
T Consensus       519 LASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Mi-scGADksimFr~~qk~~~g~~f~r-------~  590 (1080)
T KOG1408|consen  519 LASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMI-SCGADKSIMFRVNQKASSGRLFPR-------H  590 (1080)
T ss_pred             hhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEE-eccCchhhheehhccccCceeccc-------c
Confidence            222233344566777777788888888887    66766653 3344 455577665443332222333332       3


Q ss_pred             cCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeec---CCcceEEEEEeCCCCeEEEecCCCc
Q 021291          199 FSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV---HLEPVLCLSIDESCNGGISGGADQK  275 (314)
Q Consensus       199 h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~s~s~dg~  275 (314)
                      |..-....++.+. ..|..   + ++++++.|..|+|||+.+ ++..+.+++   |.+....+..+|.|.||++.+.|++
T Consensus       591 t~t~~ktTlYDm~-Vdp~~---k-~v~t~cQDrnirif~i~s-gKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdkt  664 (1080)
T KOG1408|consen  591 TQTLSKTTLYDMA-VDPTS---K-LVVTVCQDRNIRIFDIES-GKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKT  664 (1080)
T ss_pred             ccccccceEEEee-eCCCc---c-eEEEEecccceEEEeccc-cceeeeecccccCCCceEEEEECCCccEEEEeecCCc
Confidence            3333456678887 88873   3 899999999999999998 888888874   5567778889999999999999999


Q ss_pred             EEEEecCCCeeeEeeeee
Q 021291          276 IVLYNLDHSTYVLFGIGF  293 (314)
Q Consensus       276 i~iw~~~~~~~~~~~~~~  293 (314)
                      +.++|+-+++++.+..||
T Consensus       665 l~~~Df~sgEcvA~m~GH  682 (1080)
T KOG1408|consen  665 LCFVDFVSGECVAQMTGH  682 (1080)
T ss_pred             eEEEEeccchhhhhhcCc
Confidence            999999999988764443

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.84  E-value=1.3e-18  Score=146.81  Aligned_cols=258  Identities=20%  Similarity=0.216  Sum_probs=167.7

Q ss_pred             CCceEEecCCCCceeEEEEcc-CCCEEEEecCCCeEEEEeCCCCeE--EE--EEeccCCcccEEEEEEcccCCCCeEEEe
Q 021291            8 PDPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRT--VS--SSWVHSAAHGIVSVATGPSIGLNKVISQ   82 (314)
Q Consensus         8 ~~~~~~l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~--~~--~~~~~~~~~~v~~~~~~~~~~~~~l~s~   82 (314)
                      ..|-..+. -...|+|++|+| +.++|+.|..+|+|.+||+..+..  ..  ....+.+..+++.+.|.....+.-|+++
T Consensus       233 ~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~  311 (555)
T KOG1587|consen  233 NTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSL  311 (555)
T ss_pred             CCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEE
Confidence            45555555 467899999999 788999999999999999987654  22  2334455577999999874334569999


Q ss_pred             ecCCeEEEEeCCCCCCCCCCee-eeec-----ceeeEEEeeeeecc--ccccccCCCCcceee-ccCCc--ee------e
Q 021291           83 GRDGTVKCWDIENGGLSSNPSL-TIKT-----NSYHFCKLSLVKEP--YANAKQANEPKDCYE-REVGE--TV------D  145 (314)
Q Consensus        83 ~~dg~v~iwd~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~--~~------~  145 (314)
                      +.||.|..|+++.-....+... ....     .........+.+.+  ..........+.++. -+.+.  ..      .
T Consensus       312 ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~  391 (555)
T KOG1587|consen  312 SSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGH  391 (555)
T ss_pred             ecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccc
Confidence            9999999998875443211000 0000     01111111111111  111111111122222 11111  11      1


Q ss_pred             ecCCCCCC----ceeccCCCceEEEeecCcCeEEEEecC-CCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCC
Q 021291          146 TDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLN-TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQG  220 (314)
Q Consensus       146 ~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g  220 (314)
                      ..+..|.+    +.++|-+..+++++|  |-+++||... ...++..+..        +    ...+++++ |+|..+. 
T Consensus       392 ~~~~~h~g~v~~v~~nPF~~k~fls~g--DW~vriWs~~~~~~Pl~~~~~--------~----~~~v~~va-WSptrpa-  455 (555)
T KOG1587|consen  392 STFITHIGPVYAVSRNPFYPKNFLSVG--DWTVRIWSEDVIASPLLSLDS--------S----PDYVTDVA-WSPTRPA-  455 (555)
T ss_pred             ccccccCcceEeeecCCCccceeeeec--cceeEeccccCCCCcchhhhh--------c----cceeeeeE-EcCcCce-
Confidence            12223333    788899988887655  7899999987 5566666652        2    33588887 9998663 


Q ss_pred             ceEEEEeecCCcEEEEEccC-CCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCC
Q 021291          221 FVNVLAGYEDGSILVWDIRN-PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS  284 (314)
Q Consensus       221 ~~~l~~g~~dg~i~vwd~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~  284 (314)
                        .|+++..||.|.+||+.. ...|+.+...+....+.+.|+++|+.|+.|...|.+++|++...
T Consensus       456 --vF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  456 --VFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES  518 (555)
T ss_pred             --EEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence              899999999999999974 24566666666667778888999999999999999999999643

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.84  E-value=8e-19  Score=133.06  Aligned_cols=231  Identities=16%  Similarity=0.204  Sum_probs=161.6

Q ss_pred             eeEEEEccCCCEEEEecCCCeEEEEeCCCC------------eEEEEEeccCCcccEEEEEEccc-----CCCCeEEEee
Q 021291           21 VTDVCFHQTKPILFAGTTGGELRIWDTVQH------------RTVSSSWVHSAAHGIVSVATGPS-----IGLNKVISQG   83 (314)
Q Consensus        21 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~------------~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~l~s~~   83 (314)
                      ...+.|+|||..|++-+.|..+++|++...            +....++...+ ..|...+|-+.     ++..++++.+
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg-~tvydy~wYs~M~s~qP~t~l~a~ss  130 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEG-ETVYDYCWYSRMKSDQPSTNLFAVSS  130 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccC-CEEEEEEeeeccccCCCccceeeecc
Confidence            346889999999999999999999997531            11122222222 45888888631     2667899999


Q ss_pred             cCCeEEEEeCCCCCCCCCCeeeeeccee-eEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCc
Q 021291           84 RDGTVKCWDIENGGLSSNPSLTIKTNSY-HFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPK  162 (314)
Q Consensus        84 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (314)
                      .|.-|++||.-++++..  .+..-.+.. ...+++                                    ++|+|||+.
T Consensus       131 r~~PIh~wdaftG~lra--Sy~~ydh~de~taAhs------------------------------------L~Fs~DGeq  172 (406)
T KOG2919|consen  131 RDQPIHLWDAFTGKLRA--SYRAYDHQDEYTAAHS------------------------------------LQFSPDGEQ  172 (406)
T ss_pred             ccCceeeeecccccccc--chhhhhhHHhhhhhee------------------------------------EEecCCCCe
Confidence            99999999999998644  221111100 000011                                    679999998


Q ss_pred             eEEEeecCcCeEEEEec-CCCceeeeecccccCCCCCc-CCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccC
Q 021291          163 YMAVAGEQLSEVEIWDL-NTAERCTRLHQNSCGGSPNF-SSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (314)
Q Consensus       163 ~~~~~g~~d~~i~vwd~-~~~~~~~~~~~~~~~~~~~h-~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~  240 (314)
                      ++  +|. .+.|++||+ |.++....+...      .+ .....+.+.+++ |+|..+.   .+++|+....+-||.-..
T Consensus       173 lf--aGy-krcirvFdt~RpGr~c~vy~t~------~~~k~gq~giisc~a-~sP~~~~---~~a~gsY~q~~giy~~~~  239 (406)
T KOG2919|consen  173 LF--AGY-KRCIRVFDTSRPGRDCPVYTTV------TKGKFGQKGIISCFA-FSPMDSK---TLAVGSYGQRVGIYNDDG  239 (406)
T ss_pred             Ee--ecc-cceEEEeeccCCCCCCcchhhh------hcccccccceeeeee-ccCCCCc---ceeeecccceeeeEecCC
Confidence            87  466 689999999 555532222210      12 223456677776 9998542   799999999999998887


Q ss_pred             CCCceEeeecCCcceEEEEEeCCCCeEEEecC-CCcEEEEecCCCeeeEe-----------eeeeeecCCCceece
Q 021291          241 PGIPLTAMKVHLEPVLCLSIDESCNGGISGGA-DQKIVLYNLDHSTYVLF-----------GIGFVCDQEGNKFGT  304 (314)
Q Consensus       241 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-dg~i~iw~~~~~~~~~~-----------~~~~~~~~~~~~~~~  304 (314)
                       ..++..+.+|.+.|+.+.|.++|+.|++|+. |-.|..||++..+....           -+-|..+|.+..+++
T Consensus       240 -~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~Las  314 (406)
T KOG2919|consen  240 -RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILAS  314 (406)
T ss_pred             -CCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeec
Confidence             8899999999999999999999999999985 67899999986654331           233556666665543

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=1.7e-19  Score=141.11  Aligned_cols=206  Identities=18%  Similarity=0.224  Sum_probs=144.9

Q ss_pred             eEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCC
Q 021291           22 TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSN  101 (314)
Q Consensus        22 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  101 (314)
                      .+++|+.+|..|++|+.||++|||+......+.....|...  |.++.|+|  |+++|++.+.| ..+||+.+++..+..
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~e--V~DL~FS~--dgk~lasig~d-~~~VW~~~~g~~~a~  222 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAE--VKDLDFSP--DGKFLASIGAD-SARVWSVNTGAALAR  222 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCc--cccceeCC--CCcEEEEecCC-ceEEEEeccCchhhh
Confidence            68999999999999999999999998887777777777744  99999999  99999999999 999999999855441


Q ss_pred             CeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCC---CceEEEeecCcCeEEEEe
Q 021291          102 PSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEG---PKYMAVAGEQLSEVEIWD  178 (314)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g~~d~~i~vwd  178 (314)
                      ..-.-.......|.                                        |+.++   ...+++.-..-+.|+.||
T Consensus       223 ~t~~~k~~~~~~cR----------------------------------------F~~d~~~~~l~laa~~~~~~~v~~~~  262 (398)
T KOG0771|consen  223 KTPFSKDEMFSSCR----------------------------------------FSVDNAQETLRLAASQFPGGGVRLCD  262 (398)
T ss_pred             cCCcccchhhhhce----------------------------------------ecccCCCceEEEEEecCCCCceeEEE
Confidence            11011111112222                                        33322   223333333345666666


Q ss_pred             cCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEE
Q 021291          179 LNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCL  258 (314)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~  258 (314)
                      +.....-..++.       .........+.+++ .+++   |+ +++.|+.||.|.|++..+.......-+.|...|+.+
T Consensus       263 ~~~w~~~~~l~~-------~~~~~~~~siSsl~-VS~d---Gk-f~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~l  330 (398)
T KOG0771|consen  263 ISLWSGSNFLRL-------RKKIKRFKSISSLA-VSDD---GK-FLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGL  330 (398)
T ss_pred             eeeeccccccch-------hhhhhccCcceeEE-EcCC---Cc-EEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeE
Confidence            553322111110       00000122567776 8887   66 999999999999999998444444455899999999


Q ss_pred             EEeCCCCeEEEecCCCcEEEEecCCC
Q 021291          259 SIDESCNGGISGGADQKIVLYNLDHS  284 (314)
Q Consensus       259 ~~~~~~~~l~s~s~dg~i~iw~~~~~  284 (314)
                      .|+|+.+++++.+.|....+..+.-.
T Consensus       331 tF~Pdsr~~~svSs~~~~~v~~l~vd  356 (398)
T KOG0771|consen  331 TFSPDSRYLASVSSDNEAAVTKLAVD  356 (398)
T ss_pred             EEcCCcCcccccccCCceeEEEEeec
Confidence            99999999999999999999877653

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=3.6e-19  Score=134.45  Aligned_cols=251  Identities=12%  Similarity=0.139  Sum_probs=142.2

Q ss_pred             ceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEE
Q 021291           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (314)
Q Consensus        10 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~   89 (314)
                      +-+.|.+|..+|++++||+||+.|+|++.|..|.+||+..|.+++.++..   ++|+...|+|... +.++..-.+..-.
T Consensus        57 iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~---spv~~~q~hp~k~-n~~va~~~~~sp~  132 (405)
T KOG1273|consen   57 IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFD---SPVWGAQWHPRKR-NKCVATIMEESPV  132 (405)
T ss_pred             hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEcc---CccceeeeccccC-CeEEEEEecCCcE
Confidence            44577899999999999999999999999999999999999988888754   5578888877533 2222222222222


Q ss_pred             EEeCCCCCCCCCCe---eeeec-cee-eEEEeeeeeccccccccCCCCcceeeccCCceeee-cCCCCCC---ceeccCC
Q 021291           90 CWDIENGGLSSNPS---LTIKT-NSY-HFCKLSLVKEPYANAKQANEPKDCYEREVGETVDT-DSLCDSK---DDVPAEG  160 (314)
Q Consensus        90 iwd~~~~~~~~~~~---~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~  160 (314)
                      +-++..+....-|.   ..+.. ... ....    ...........+...+++..+.+.... .....+.   +.++..|
T Consensus       133 vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr----~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g  208 (405)
T KOG1273|consen  133 VIDFSDPKHSVLPKDDDGDLNSSASHGVFDR----RGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKG  208 (405)
T ss_pred             EEEecCCceeeccCCCccccccccccccccC----CCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccC
Confidence            22222111000000   00000 000 0000    000000011111112222222211110 0000011   5677778


Q ss_pred             CceEEEeecCcCeEEEEecCCCce---------eeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCC
Q 021291          161 PKYMAVAGEQLSEVEIWDLNTAER---------CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG  231 (314)
Q Consensus       161 ~~~~~~~g~~d~~i~vwd~~~~~~---------~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg  231 (314)
                      +.+++  .+.|+.|+.|+++.-..         .+.+.           +-++...+..++|+.+   |.+.+++.....
T Consensus       209 ~~lii--NtsDRvIR~ye~~di~~~~r~~e~e~~~K~q-----------DvVNk~~Wk~ccfs~d---geYv~a~s~~aH  272 (405)
T KOG1273|consen  209 RFLII--NTSDRVIRTYEISDIDDEGRDGEVEPEHKLQ-----------DVVNKLQWKKCCFSGD---GEYVCAGSARAH  272 (405)
T ss_pred             cEEEE--ecCCceEEEEehhhhcccCccCCcChhHHHH-----------HHHhhhhhhheeecCC---ccEEEeccccce
Confidence            76653  45589999999873211         11111           0011112222248876   773444445567


Q ss_pred             cEEEEEccCCCCceEeeecCC-cceEEEEEeCCCCeEEEecCCCcEEEEecCCCee
Q 021291          232 SILVWDIRNPGIPLTAMKVHL-EPVLCLSIDESCNGGISGGADQKIVLYNLDHSTY  286 (314)
Q Consensus       232 ~i~vwd~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~  286 (314)
                      .++||.... +.+++.+.|.. .....+.|+|-...+++- ..|.+++|.......
T Consensus       273 aLYIWE~~~-GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~en  326 (405)
T KOG1273|consen  273 ALYIWEKSI-GSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVEN  326 (405)
T ss_pred             eEEEEecCC-cceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeecccc
Confidence            799999988 99999999887 678899999998888877 678999998775543

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.83  E-value=5.4e-19  Score=149.12  Aligned_cols=195  Identities=17%  Similarity=0.237  Sum_probs=156.1

Q ss_pred             CCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEE---eccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCC
Q 021291           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSS---WVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE   94 (314)
Q Consensus        18 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~   94 (314)
                      ...+++++.++.|++.+.|...|.|-+|++..|-...++   ..|..  +|+.++...  -++.+++++.+|.+++||..
T Consensus       448 ~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~--~V~gla~D~--~n~~~vsa~~~Gilkfw~f~  523 (910)
T KOG1539|consen  448 DINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKG--EVTGLAVDG--TNRLLVSAGADGILKFWDFK  523 (910)
T ss_pred             CcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccC--ceeEEEecC--CCceEEEccCcceEEEEecC
Confidence            467899999999999999999999999999999888888   46774  499999987  67899999999999999999


Q ss_pred             CCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeE
Q 021291           95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEV  174 (314)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i  174 (314)
                      ...+..    .+.......+                                       +..+.... +++ .+..|-.|
T Consensus       524 ~k~l~~----~l~l~~~~~~---------------------------------------iv~hr~s~-l~a-~~~ddf~I  558 (910)
T KOG1539|consen  524 KKVLKK----SLRLGSSITG---------------------------------------IVYHRVSD-LLA-IALDDFSI  558 (910)
T ss_pred             Ccceee----eeccCCCcce---------------------------------------eeeeehhh-hhh-hhcCceeE
Confidence            876433    2211111111                                       11222222 333 34457899


Q ss_pred             EEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcc
Q 021291          175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP  254 (314)
Q Consensus       175 ~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~  254 (314)
                      +++|..+.+.++.|.        ||.+    .++++. |+||   |+ +|++++.|++|++||+.+ +.++-.+. -..+
T Consensus       559 ~vvD~~t~kvvR~f~--------gh~n----ritd~~-FS~D---gr-WlisasmD~tIr~wDlpt-~~lID~~~-vd~~  619 (910)
T KOG1539|consen  559 RVVDVVTRKVVREFW--------GHGN----RITDMT-FSPD---GR-WLISASMDSTIRTWDLPT-GTLIDGLL-VDSP  619 (910)
T ss_pred             EEEEchhhhhhHHhh--------cccc----ceeeeE-eCCC---Cc-EEEEeecCCcEEEEeccC-cceeeeEe-cCCc
Confidence            999999999999998        8855    677777 9998   66 999999999999999998 77776665 3678


Q ss_pred             eEEEEEeCCCCeEEEecCC-CcEEEEe
Q 021291          255 VLCLSIDESCNGGISGGAD-QKIVLYN  280 (314)
Q Consensus       255 v~~~~~~~~~~~l~s~s~d-g~i~iw~  280 (314)
                      .+++.|+|+|.+|||...| .-|++|.
T Consensus       620 ~~sls~SPngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  620 CTSLSFSPNGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             ceeeEECCCCCEEEEEEecCceEEEEE
Confidence            9999999999999999988 5699995

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.83  E-value=3.2e-18  Score=141.79  Aligned_cols=260  Identities=15%  Similarity=0.164  Sum_probs=171.8

Q ss_pred             CceEEecCCCCceeEEEEccCCC---EEEEecCCCeEEEEeCCCC--eEEEEEeccCCcccEEEEEEcccCCCCeEEEee
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKP---ILFAGTTGGELRIWDTVQH--RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG   83 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~---~l~s~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (314)
                      ..+..++||.++|+|+.|-|+.+   ++++|+.|+.|.+|.++..  .++..+++|.    +.++++..  ........+
T Consensus        45 ~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~----~~~~cv~a--~~~~~~~~~  118 (764)
T KOG1063|consen   45 LIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHC----KECVCVVA--RSSVMTCKA  118 (764)
T ss_pred             eeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcc----eeEEEEEe--eeeEEEeec
Confidence            35778999999999999999776   8999999999999999843  3455666655    45555554  323333347


Q ss_pred             cCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCc----eeeecCCCCCC----ce
Q 021291           84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE----TVDTDSLCDSK----DD  155 (314)
Q Consensus        84 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~----~~  155 (314)
                      .|+++.+||.+..+......+.+.........++....+.....+.++......+....    .....+.+|.+    ++
T Consensus       119 ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~  198 (764)
T KOG1063|consen  119 ADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLA  198 (764)
T ss_pred             cCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhh
Confidence            89999999996555211112222222221222233333344455555555555554333    45567889988    88


Q ss_pred             eccCCC-ceEEEeecCcCeEEEEecCCCceee---------------------ee--cccccCCCCCcCCCCCceeeeEE
Q 021291          156 VPAEGP-KYMAVAGEQLSEVEIWDLNTAERCT---------------------RL--HQNSCGGSPNFSSKGRGMCMAVQ  211 (314)
Q Consensus       156 ~~~~~~-~~~~~~g~~d~~i~vwd~~~~~~~~---------------------~~--~~~~~~~~~~h~~~~~~~~~~~~  211 (314)
                      |...+. .+++++++.|..|+||.+.-+....                     .+  ......-..||    ...++++.
T Consensus       199 f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GH----eDWV~sv~  274 (764)
T KOG1063|consen  199 FARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGH----EDWVYSVW  274 (764)
T ss_pred             hhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCc----ccceEEEE
Confidence            886655 7777899999999999875332100                     00  00000111256    55889998


Q ss_pred             EecCCCCCCceEEEEeecCCcEEEEEccCC-C-----CceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCC
Q 021291          212 AYLPSKSQGFVNVLAGYEDGSILVWDIRNP-G-----IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH  283 (314)
Q Consensus       212 ~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~-~-----~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~  283 (314)
                       |+|.   +. .|++++.|.++.+|.-... +     -.+..+.+......+.-|+|++..+++-+.-|-.++|....
T Consensus       275 -W~p~---~~-~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d  347 (764)
T KOG1063|consen  275 -WHPE---GL-DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKD  347 (764)
T ss_pred             -Eccc---hh-hheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccC
Confidence             9998   54 7999999999999987652 1     12233444455688999999999999999999999999433

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.83  E-value=5.4e-19  Score=146.09  Aligned_cols=238  Identities=15%  Similarity=0.185  Sum_probs=161.3

Q ss_pred             ceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCC
Q 021291           20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLS   99 (314)
Q Consensus        20 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~   99 (314)
                      .|..++|.|||..|+.+..| .+.+||..+|..++++++|...  |.|++|+.  ||+.|++|+.|..|.+|+..-....
T Consensus        14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDt--VycVAys~--dGkrFASG~aDK~VI~W~~klEG~L   88 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDT--VYCVAYAK--DGKRFASGSADKSVIIWTSKLEGIL   88 (1081)
T ss_pred             chheeEECCCCceEEEecCC-EEEEEeCCCcccccccccccce--EEEEEEcc--CCceeccCCCceeEEEeccccccee
Confidence            79999999999988877665 6999999999999999999955  99999999  9999999999999999987644322


Q ss_pred             CCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC-ceeccCCCceEEEeecCcCeEEEEe
Q 021291          100 SNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-DDVPAEGPKYMAVAGEQLSEVEIWD  178 (314)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~d~~i~vwd  178 (314)
                      +    -.+........|++.........  -+....|...............-. .+|..||++++  -|-.||+|.+-+
T Consensus        89 k----YSH~D~IQCMsFNP~~h~LasCs--LsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqyla--lG~~nGTIsiRN  160 (1081)
T KOG1538|consen   89 K----YSHNDAIQCMSFNPITHQLASCS--LSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLA--LGMFNGTISIRN  160 (1081)
T ss_pred             e----eccCCeeeEeecCchHHHhhhcc--hhhccccChhhhhHHhhhhheeEEEeeecCCCcEEE--EeccCceEEeec
Confidence            1    23344445555555443332221  122223332222111111111111 78999998765  477789999886


Q ss_pred             cCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCC-----------------------------------------
Q 021291          179 LNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSK-----------------------------------------  217 (314)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~-----------------------------------------  217 (314)
                      - +++....+..+         ...+..+++++ |+|..                                         
T Consensus       161 k-~gEek~~I~Rp---------gg~Nspiwsi~-~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~Cis  229 (1081)
T KOG1538|consen  161 K-NGEEKVKIERP---------GGSNSPIWSIC-WNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCIS  229 (1081)
T ss_pred             C-CCCcceEEeCC---------CCCCCCceEEE-ecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhhe
Confidence            4 34433333321         11233444444 44431                                         


Q ss_pred             --CCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCC
Q 021291          218 --SQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS  284 (314)
Q Consensus       218 --~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~  284 (314)
                        ++|+ +++.|+.|+.+++|.-+  +..+.++.....+|+.++..|++++++.|+.||+|..|++-..
T Consensus       230 Yf~NGE-y~LiGGsdk~L~~fTR~--GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fS  295 (1081)
T KOG1538|consen  230 YFTNGE-YILLGGSDKQLSLFTRD--GVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFS  295 (1081)
T ss_pred             eccCCc-EEEEccCCCceEEEeec--CeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHh
Confidence              1155 67777788888887654  6667777777789999999999999999999999999987543

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.83  E-value=2.8e-19  Score=133.59  Aligned_cols=211  Identities=18%  Similarity=0.223  Sum_probs=148.3

Q ss_pred             CCCCceeEEEEccCC-----CEEEEecCCCeEEEEeCCCC--eE--EEEE---eccCCcccEEEEEEcccCCCCeEEEee
Q 021291           16 GHRASVTDVCFHQTK-----PILFAGTTGGELRIWDTVQH--RT--VSSS---WVHSAAHGIVSVATGPSIGLNKVISQG   83 (314)
Q Consensus        16 ~h~~~v~~~~~~~~~-----~~l~s~~~dg~v~iwd~~~~--~~--~~~~---~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (314)
                      .|.-+++.+.|.|+.     ++|||.+ | .+|+|.+...  +.  ...+   +.....+++++..|+.. +.+++.++|
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs~-D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~-dp~~igtSS  170 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATSS-D-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEV-DPNLIGTSS  170 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhccc-C-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccC-CcceeEeec
Confidence            478899999999965     3566654 3 6999998742  21  1112   11222357999999875 668999999


Q ss_pred             cCCeEEEEeCCCCCC--CCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCC
Q 021291           84 RDGTVKCWDIENGGL--SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGP  161 (314)
Q Consensus        84 ~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (314)
                      -|-+..|||++++..  ++. .+..+......                                        ++|...+.
T Consensus       171 iDTTCTiWdie~~~~~~vkT-QLIAHDKEV~D----------------------------------------Iaf~~~s~  209 (364)
T KOG0290|consen  171 IDTTCTIWDIETGVSGTVKT-QLIAHDKEVYD----------------------------------------IAFLKGSR  209 (364)
T ss_pred             ccCeEEEEEEeeccccceee-EEEecCcceeE----------------------------------------EEeccCcc
Confidence            999999999998722  111 00111111110                                        56878777


Q ss_pred             ceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecC-CcEEEEEccC
Q 021291          162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED-GSILVWDIRN  240 (314)
Q Consensus       162 ~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~d-g~i~vwd~~~  240 (314)
                      .+++..| .||.|++||+|..+....+-.       .  .........+. |++.++.   ++|+-..| ..|.|.|+|.
T Consensus       210 ~~FASvg-aDGSvRmFDLR~leHSTIIYE-------~--p~~~~pLlRLs-wnkqDpn---ymATf~~dS~~V~iLDiR~  275 (364)
T KOG0290|consen  210 DVFASVG-ADGSVRMFDLRSLEHSTIIYE-------D--PSPSTPLLRLS-WNKQDPN---YMATFAMDSNKVVILDIRV  275 (364)
T ss_pred             ceEEEec-CCCcEEEEEecccccceEEec-------C--CCCCCcceeec-cCcCCch---HHhhhhcCCceEEEEEecC
Confidence            7887555 499999999998776544431       0  11134566666 8776442   77765554 4699999999


Q ss_pred             CCCceEeeecCCcceEEEEEeCCC-CeEEEecCCCcEEEEecCCC
Q 021291          241 PGIPLTAMKVHLEPVLCLSIDESC-NGGISGGADQKIVLYNLDHS  284 (314)
Q Consensus       241 ~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~i~iw~~~~~  284 (314)
                      +..++..+.+|.+.|+.++|.|.. ..|+|++.|..+.+||+..-
T Consensus       276 P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~  320 (364)
T KOG0290|consen  276 PCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM  320 (364)
T ss_pred             CCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence            999999999999999999997754 57999999999999999754

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.83  E-value=2.6e-18  Score=133.88  Aligned_cols=254  Identities=18%  Similarity=0.234  Sum_probs=154.9

Q ss_pred             ceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCC--------C--------CeEEEEEeccCCcccEEEEEEccc
Q 021291           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTV--------Q--------HRTVSSSWVHSAAHGIVSVATGPS   73 (314)
Q Consensus        10 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~--------~--------~~~~~~~~~~~~~~~v~~~~~~~~   73 (314)
                      .+..|..|..+|+++.|+|+|.+||+|+.+|.|.+|...        +        ......+.+|...  |+.++|+| 
T Consensus        57 y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~d--iydL~Ws~-  133 (434)
T KOG1009|consen   57 YLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDD--IYDLAWSP-  133 (434)
T ss_pred             EeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccc--hhhhhccC-
Confidence            466788999999999999999999999999999999765        2        1234566778755  99999999 


Q ss_pred             CCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCC------------
Q 021291           74 IGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVG------------  141 (314)
Q Consensus        74 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  141 (314)
                       ++.++++++.|.++++||+..+.+..  ...-+.+......+.+............ ....+.+...            
T Consensus       134 -d~~~l~s~s~dns~~l~Dv~~G~l~~--~~~dh~~yvqgvawDpl~qyv~s~s~dr-~~~~~~~~~~~~~~~~~~~~m~  209 (434)
T KOG1009|consen  134 -DSNFLVSGSVDNSVRLWDVHAGQLLA--ILDDHEHYVQGVAWDPLNQYVASKSSDR-HPEGFSAKLKQVIKRHGLDIMP  209 (434)
T ss_pred             -CCceeeeeeccceEEEEEeccceeEe--eccccccccceeecchhhhhhhhhccCc-ccceeeeeeeeeeeeeeeeEee
Confidence             99999999999999999999997654  3333333333333333322222111111 0011100000            


Q ss_pred             -------ceeeecCCCCCC--------ceeccCCCceEEEeecC--c-----CeEEEEecCCC-ceeeeecccccCCCCC
Q 021291          142 -------ETVDTDSLCDSK--------DDVPAEGPKYMAVAGEQ--L-----SEVEIWDLNTA-ERCTRLHQNSCGGSPN  198 (314)
Q Consensus       142 -------~~~~~~~~~~~~--------~~~~~~~~~~~~~~g~~--d-----~~i~vwd~~~~-~~~~~~~~~~~~~~~~  198 (314)
                             ...... .-|..        ++|+|+|..++.-+|..  +     +..++|+-... ++...++         
T Consensus       210 ~~~~~~~e~~s~r-LfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp---------  279 (434)
T KOG1009|consen  210 AKAFNEREGKSTR-LFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLP---------  279 (434)
T ss_pred             ecccCCCCcceee-eeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecC---------
Confidence                   000000 11111        88999997554322210  1     12334433221 1222222         


Q ss_pred             cCCCCCceeeeEEEecCC-------CCC-------CceEEEEeecCCcEEEEEccCCCCceEee-ecCCcceEEEEEeCC
Q 021291          199 FSSKGRGMCMAVQAYLPS-------KSQ-------GFVNVLAGYEDGSILVWDIRNPGIPLTAM-KVHLEPVLCLSIDES  263 (314)
Q Consensus       199 h~~~~~~~~~~~~~~~p~-------~~~-------g~~~l~~g~~dg~i~vwd~~~~~~~~~~~-~~h~~~v~~~~~~~~  263 (314)
                         ...-....+. |+|-       ...       -+..++.++. ..|++||.++ -.|+... .-|-.+|++++|+++
T Consensus       280 ---~~~k~~lavr-~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~-~~P~~~v~nihy~~iTDiaws~d  353 (434)
T KOG1009|consen  280 ---SPKKPALAVR-FSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQT-LEPLAVVDNIHYSAITDIAWSDD  353 (434)
T ss_pred             ---CCCcceEEEE-eeeeEEEeccccccccccccccceEEEEeec-ceEEEecccc-ccceEEEeeeeeeeecceeecCC
Confidence               1122333333 3331       000       1224555554 5899999998 5555544 468899999999999


Q ss_pred             CCeEEEecCCCcEEEEecCCCee
Q 021291          264 CNGGISGGADQKIVLYNLDHSTY  286 (314)
Q Consensus       264 ~~~l~s~s~dg~i~iw~~~~~~~  286 (314)
                      |..|+..|.||...+-.++..+.
T Consensus       354 g~~l~vSS~DGyCS~vtfe~~el  376 (434)
T KOG1009|consen  354 GSVLLVSSTDGFCSLVTFEPWEL  376 (434)
T ss_pred             CcEEEEeccCCceEEEEEcchhc
Confidence            99999999999988877776543

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=1.1e-18  Score=133.07  Aligned_cols=198  Identities=18%  Similarity=0.249  Sum_probs=144.1

Q ss_pred             CEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecce
Q 021291           31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNS  110 (314)
Q Consensus        31 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~  110 (314)
                      +.+|++-..|.|++||..+++.+..++++...  +..+.|......+.+.+|+.||+|++||++......  .+.....+
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~--~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a--~~~~~~~~  116 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPAT--TNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESA--RISWTQQS  116 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCc--ccceEEecCCCCCeeEEeccCCeEEEEEeecchhhh--heeccCCC
Confidence            46888999999999999999999999999855  888998763345788999999999999999876543  22222222


Q ss_pred             -eeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccC-CCceEEEeecC----cCeEEEEecCCCce
Q 021291          111 -YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAE-GPKYMAVAGEQ----LSEVEIWDLNTAER  184 (314)
Q Consensus       111 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~----d~~i~vwd~~~~~~  184 (314)
                       ...                                        ++|.-+ ..++++ +|..    |-.|.+||+|..+.
T Consensus       117 ~~~f----------------------------------------~~ld~nck~~ii~-~GtE~~~s~A~v~lwDvR~~qq  155 (376)
T KOG1188|consen  117 GTPF----------------------------------------ICLDLNCKKNIIA-CGTELTRSDASVVLWDVRSEQQ  155 (376)
T ss_pred             CCcc----------------------------------------eEeeccCcCCeEE-eccccccCceEEEEEEeccccc
Confidence             011                                        112221 123333 4432    56799999998776


Q ss_pred             -eeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCC--ceEeeecCCcceEEEEEe
Q 021291          185 -CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI--PLTAMKVHLEPVLCLSID  261 (314)
Q Consensus       185 -~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~--~~~~~~~h~~~v~~~~~~  261 (314)
                       +..+..       .|    ..-++++. |+|..++   +|++|+.||.|.|||+....+  .+...-.|...|..+.|.
T Consensus       156 ~l~~~~e-------SH----~DDVT~lr-FHP~~pn---lLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~  220 (376)
T KOG1188|consen  156 LLRQLNE-------SH----NDDVTQLR-FHPSDPN---LLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWL  220 (376)
T ss_pred             hhhhhhh-------hc----cCcceeEE-ecCCCCC---eEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeee
Confidence             555553       56    44678887 9998664   999999999999999985322  233333577889999996


Q ss_pred             CCC-CeEEEecCCCcEEEEecCCCeeeE
Q 021291          262 ESC-NGGISGGADQKIVLYNLDHSTYVL  288 (314)
Q Consensus       262 ~~~-~~l~s~s~dg~i~iw~~~~~~~~~  288 (314)
                      .++ +.|.+-+......+|+++.+....
T Consensus       221 ~~~ykrI~clTH~Etf~~~ele~~~~~~  248 (376)
T KOG1188|consen  221 SKKYKRIMCLTHMETFAIYELEDGSEET  248 (376)
T ss_pred             cCCcceEEEEEccCceeEEEccCCChhh
Confidence            655 558888999999999999887543

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.81  E-value=1.2e-17  Score=133.80  Aligned_cols=209  Identities=22%  Similarity=0.386  Sum_probs=158.3

Q ss_pred             ceEEecCCCCceeEEEEccCCCEEEEecCCC--------eEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEE
Q 021291           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGG--------ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS   81 (314)
Q Consensus        10 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg--------~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s   81 (314)
                      ..+.+.||+..|.|++.+||.-.+++|-.-|        .+++||..+-..+..+....  ..|.|++|++.+.|.+|+.
T Consensus        96 ~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~--~GV~~vaFsk~~~G~~l~~  173 (626)
T KOG2106|consen   96 SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFD--RGVTCVAFSKINGGSLLCA  173 (626)
T ss_pred             hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeecccc--ccceeeeecccCCCceEEE
Confidence            3455679999999999999998888876555        49999988877777776544  5599999999766777666


Q ss_pred             e--ecCCeEEEEeCCCCCCCCCCeeeeec-ceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceecc
Q 021291           82 Q--GRDGTVKCWDIENGGLSSNPSLTIKT-NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPA  158 (314)
Q Consensus        82 ~--~~dg~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (314)
                      .  +.+..+.+||...+....    ..+. +.....                                       ..|+|
T Consensus       174 vD~s~~h~lSVWdWqk~~~~~----~vk~sne~v~~---------------------------------------a~FHP  210 (626)
T KOG2106|consen  174 VDDSNPHMLSVWDWQKKAKLG----PVKTSNEVVFL---------------------------------------ATFHP  210 (626)
T ss_pred             ecCCCccccchhhchhhhccC----cceeccceEEE---------------------------------------EEecc
Confidence            5  346679999998765433    1111 111111                                       45899


Q ss_pred             CCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEc
Q 021291          159 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI  238 (314)
Q Consensus       159 ~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~  238 (314)
                      .+.++++..|-  +.+.+|+++.+....+..        -.....+..+.+++ |.++   |.  +++|..+|.|.||+.
T Consensus       211 td~nliit~Gk--~H~~Fw~~~~~~l~k~~~--------~fek~ekk~Vl~v~-F~en---gd--viTgDS~G~i~Iw~~  274 (626)
T KOG2106|consen  211 TDPNLIITCGK--GHLYFWTLRGGSLVKRQG--------IFEKREKKFVLCVT-FLEN---GD--VITGDSGGNILIWSK  274 (626)
T ss_pred             CCCcEEEEeCC--ceEEEEEccCCceEEEee--------ccccccceEEEEEE-EcCC---CC--EEeecCCceEEEEeC
Confidence            99998876553  899999999887655433        12222346789998 9998   53  999999999999999


Q ss_pred             cCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEec
Q 021291          239 RNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL  281 (314)
Q Consensus       239 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~  281 (314)
                      .. .+..+...+|.+.|.+++.-.+|. |+||+.|..|..||-
T Consensus       275 ~~-~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~  315 (626)
T KOG2106|consen  275 GT-NRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDD  315 (626)
T ss_pred             CC-ceEEeEeeecCCceEEEEEecCcc-EeecCccceEEeccc
Confidence            87 666666669999999999999997 556999999999983

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.81  E-value=1.3e-18  Score=144.11  Aligned_cols=217  Identities=20%  Similarity=0.257  Sum_probs=154.9

Q ss_pred             ceEEecCCCCceeEEEEccCCCEEEEecCC-----CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeec
Q 021291           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTG-----GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (314)
Q Consensus        10 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (314)
                      .++.|.||.-.|.|++.+|+|+++||++..     ..|++|+..+-...+.+.+|.-.  |+.|+|+|  |+++|++++.
T Consensus       517 Ev~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLT--VT~l~FSp--dg~~LLsvsR  592 (764)
T KOG1063|consen  517 EVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLT--VTRLAFSP--DGRYLLSVSR  592 (764)
T ss_pred             hhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceE--EEEEEECC--CCcEEEEeec
Confidence            356678999999999999999999999764     36999999988888889999855  99999999  9999999999


Q ss_pred             CCeEEEEeCCCCCCCCCCeeeeeccee-eEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCce
Q 021291           85 DGTVKCWDIENGGLSSNPSLTIKTNSY-HFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY  163 (314)
Q Consensus        85 dg~v~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (314)
                      |+++.+|........   .+.+..... .-..+.                                    .+|+|++.++
T Consensus       593 DRt~sl~~~~~~~~~---e~~fa~~k~HtRIIWd------------------------------------csW~pde~~F  633 (764)
T KOG1063|consen  593 DRTVSLYEVQEDIKD---EFRFACLKAHTRIIWD------------------------------------CSWSPDEKYF  633 (764)
T ss_pred             CceEEeeeeecccch---hhhhccccccceEEEE------------------------------------cccCccccee
Confidence            999999998554321   111111111 111111                                    4689998774


Q ss_pred             EEEeecCcCeEEEEecCCC--ceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCC-CceEEEEeecCCcEEEEEccC
Q 021291          164 MAVAGEQLSEVEIWDLNTA--ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQ-GFVNVLAGYEDGSILVWDIRN  240 (314)
Q Consensus       164 ~~~~g~~d~~i~vwd~~~~--~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~-g~~~l~~g~~dg~i~vwd~~~  240 (314)
                        ++++.|.+|++|.....  +.+..+...      .+    ...++++. |.|-.-. ....+++|-+.|.|.+|....
T Consensus       634 --aTaSRDK~VkVW~~~~~~d~~i~~~a~~------~~----~~aVTAv~-~~~~~~~e~~~~vavGle~GeI~l~~~~~  700 (764)
T KOG1063|consen  634 --ATASRDKKVKVWEEPDLRDKYISRFACL------KF----SLAVTAVA-YLPVDHNEKGDVVAVGLEKGEIVLWRRKR  700 (764)
T ss_pred             --EEecCCceEEEEeccCchhhhhhhhchh------cc----CCceeeEE-eeccccccccceEEEEecccEEEEEeccc
Confidence              37889999999998877  333332210      22    44666776 7663211 112789999999999999651


Q ss_pred             CCC-----------ceEeeecCCcceEEEEEeCC----------CCeEEEecCCCcEEEEecC
Q 021291          241 PGI-----------PLTAMKVHLEPVLCLSIDES----------CNGGISGGADQKIVLYNLD  282 (314)
Q Consensus       241 ~~~-----------~~~~~~~h~~~v~~~~~~~~----------~~~l~s~s~dg~i~iw~~~  282 (314)
                      ..+           .+....+|.+.|+.+.|.|.          ...|++|+.|..++++++.
T Consensus       701 ~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~  763 (764)
T KOG1063|consen  701 EHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD  763 (764)
T ss_pred             ccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence            011           11122356778999999754          3457999999999999875

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.81  E-value=4.9e-19  Score=134.39  Aligned_cols=232  Identities=17%  Similarity=0.217  Sum_probs=158.2

Q ss_pred             CCCceeEEEEccC----CCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEe
Q 021291           17 HRASVTDVCFHQT----KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD   92 (314)
Q Consensus        17 h~~~v~~~~~~~~----~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd   92 (314)
                      |...-..++|+-+    ..+||.|+.-|.|+|.|+.++++...+.+|.++  |..+.+.|. +.++++++|.|.+|++||
T Consensus        88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~s--INeik~~p~-~~qlvls~SkD~svRlwn  164 (385)
T KOG1034|consen   88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGS--INEIKFHPD-RPQLVLSASKDHSVRLWN  164 (385)
T ss_pred             CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCcc--chhhhcCCC-CCcEEEEecCCceEEEEe
Confidence            6777888888863    348899999999999999999999999999966  999999994 346899999999999999


Q ss_pred             CCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCceEEEee
Q 021291           93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAG  168 (314)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g  168 (314)
                      +++..++.  ++                                         .-..+|.+    +.|+++|.+++  ++
T Consensus       165 I~~~~Cv~--Vf-----------------------------------------GG~egHrdeVLSvD~~~~gd~i~--Sc  199 (385)
T KOG1034|consen  165 IQTDVCVA--VF-----------------------------------------GGVEGHRDEVLSVDFSLDGDRIA--SC  199 (385)
T ss_pred             ccCCeEEE--Ee-----------------------------------------cccccccCcEEEEEEcCCCCeee--cc
Confidence            99987643  11                                         11233333    66899998554  67


Q ss_pred             cCcCeEEEEecCCCceeeeecc------ccc----------CCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCc
Q 021291          169 EQLSEVEIWDLNTAERCTRLHQ------NSC----------GGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS  232 (314)
Q Consensus       169 ~~d~~i~vwd~~~~~~~~~~~~------~~~----------~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~  232 (314)
                      +.|.+|++|++...+....++.      +..          .+...-.+-++..+-|+. |-     |. ++++-+-++.
T Consensus       200 GmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvr-w~-----gd-~ilSkscena  272 (385)
T KOG1034|consen  200 GMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVR-WF-----GD-FILSKSCENA  272 (385)
T ss_pred             CCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHH-HH-----hh-heeecccCce
Confidence            7799999999985432211110      000          000000011122333443 44     33 7888888899


Q ss_pred             EEEEEccCCCC-------------ceEeeecCCcceEEEEE--eCCCCeEEEecCCCcEEEEecCCCeeeE---------
Q 021291          233 ILVWDIRNPGI-------------PLTAMKVHLEPVLCLSI--DESCNGGISGGADQKIVLYNLDHSTYVL---------  288 (314)
Q Consensus       233 i~vwd~~~~~~-------------~~~~~~~h~~~v~~~~~--~~~~~~l~s~s~dg~i~iw~~~~~~~~~---------  288 (314)
                      |..|-.-...+             .+.++......|+-+.|  ++-++.||.|.+.|.|.+||++......         
T Consensus       273 I~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~  352 (385)
T KOG1034|consen  273 IVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKS  352 (385)
T ss_pred             EEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccc
Confidence            99998721121             22334444456666665  7888899999999999999998776531         


Q ss_pred             --eeeeeeecCCCceec
Q 021291          289 --FGIGFVCDQEGNKFG  303 (314)
Q Consensus       289 --~~~~~~~~~~~~~~~  303 (314)
                        ++...+++.+|..+.
T Consensus       353 ~~tVRQ~sfS~dgs~lv  369 (385)
T KOG1034|consen  353 GSTVRQTSFSRDGSILV  369 (385)
T ss_pred             cceeeeeeecccCcEEE
Confidence              133455667776554

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.80  E-value=1.7e-18  Score=140.19  Aligned_cols=218  Identities=14%  Similarity=0.192  Sum_probs=144.8

Q ss_pred             CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCC----------eEEEEEeccCCcccEEEEEEcccCCCCe
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH----------RTVSSSWVHSAAHGIVSVATGPSIGLNK   78 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~   78 (314)
                      +++.+|++|.++|.|+++.+++..+++|+.||+|+.|++...          .....+.+|...  |+.+++++  ....
T Consensus       335 epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtda--vw~l~~s~--~~~~  410 (577)
T KOG0642|consen  335 EPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDA--VWLLALSS--TKDR  410 (577)
T ss_pred             eeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccc--eeeeeecc--cccc
Confidence            689999999999999999999999999999999999965421          234567889855  99999999  7788


Q ss_pred             EEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccC--CCCcceeeccCCceeee----cCCC--
Q 021291           79 VISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA--NEPKDCYEREVGETVDT----DSLC--  150 (314)
Q Consensus        79 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~----~~~~--  150 (314)
                      |++++.||+|++|+...... .  .+...........+...........+.  .....+.++........    ...+  
T Consensus       411 Llscs~DgTvr~w~~~~~~~-~--~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~  487 (577)
T KOG0642|consen  411 LLSCSSDGTVRLWEPTEESP-C--TFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPR  487 (577)
T ss_pred             eeeecCCceEEeeccCCcCc-c--ccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCccc
Confidence            99999999999999876543 1  112111111111111111111111111  01111111111111100    0011  


Q ss_pred             ---CCC-ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEE
Q 021291          151 ---DSK-DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA  226 (314)
Q Consensus       151 ---~~~-~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~  226 (314)
                         +.. +.+.|.+...+  ++..|+.|+++|..++..+....        +|..    .+.+++ +.|+++    +|++
T Consensus       488 ~~~~in~vVs~~~~~~~~--~~hed~~Ir~~dn~~~~~l~s~~--------a~~~----svtsla-i~~ng~----~l~s  548 (577)
T KOG0642|consen  488 RYPQINKVVSHPTADITF--TAHEDRSIRFFDNKTGKILHSMV--------AHKD----SVTSLA-IDPNGP----YLMS  548 (577)
T ss_pred             ccCccceEEecCCCCeeE--ecccCCceecccccccccchhee--------eccc----eeccee-ecCCCc----eEEe
Confidence               111 66777775333  67789999999999999988777        5633    677776 999844    9999


Q ss_pred             eecCCcEEEEEccCCCCceEeeecCCc
Q 021291          227 GYEDGSILVWDIRNPGIPLTAMKVHLE  253 (314)
Q Consensus       227 g~~dg~i~vwd~~~~~~~~~~~~~h~~  253 (314)
                      |+.|+.+++|.+.. ..++.....|..
T Consensus       549 ~s~d~sv~l~kld~-k~~~~es~~~r~  574 (577)
T KOG0642|consen  549 GSHDGSVRLWKLDV-KTCVLESTAHRK  574 (577)
T ss_pred             ecCCceeehhhccc-hheeeccccccc
Confidence            99999999999987 666666666643

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.80  E-value=3.2e-18  Score=136.85  Aligned_cols=241  Identities=14%  Similarity=0.173  Sum_probs=155.7

Q ss_pred             ceeEEEEccCCC-EEEEecCCCeEEEEeCCCCe---E--EEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeC
Q 021291           20 SVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHR---T--VSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI   93 (314)
Q Consensus        20 ~v~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~---~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~   93 (314)
                      .+.++.|+.... .+++-+.|..|++|.-. ++   .  +....+.    .-.|++...  ...++++|+..+.|+|||+
T Consensus        36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~-g~~~~Vp~~~k~~gd----~~~Cv~~~s--~S~y~~sgG~~~~Vkiwdl  108 (673)
T KOG4378|consen   36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKD-GKTPEVPRVRKLTGD----NAFCVACAS--QSLYEISGGQSGCVKIWDL  108 (673)
T ss_pred             cceeeeccccceEEEeecCCceeEEEeccc-CCCCccceeeccccc----hHHHHhhhh--cceeeeccCcCceeeehhh
Confidence            488899987553 23445668899999743 33   1  1222222    234555544  4578999999999999999


Q ss_pred             CCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCceEEEeec
Q 021291           94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGE  169 (314)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~  169 (314)
                      +...+.+  .+..+...+....+..... .......++...+..+..+........+...    +.|++..+.++. +.+
T Consensus       109 ~~kl~hr--~lkdh~stvt~v~YN~~De-yiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~-~as  184 (673)
T KOG4378|consen  109 RAKLIHR--FLKDHQSTVTYVDYNNTDE-YIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLS-IAS  184 (673)
T ss_pred             HHHHHhh--hccCCcceeEEEEecCCcc-eeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeE-eec
Confidence            9655443  2222222222222221111 1112223333333333333222111111111    789999877776 556


Q ss_pred             CcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeee
Q 021291          170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK  249 (314)
Q Consensus       170 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~  249 (314)
                      .+|.|.+||+....++..+..       .|+.    ++..++ |+|.   .+.+|++.+.|..|.+||++. ......+.
T Consensus       185 d~G~VtlwDv~g~sp~~~~~~-------~HsA----P~~gic-fsps---ne~l~vsVG~Dkki~~yD~~s-~~s~~~l~  248 (673)
T KOG4378|consen  185 DKGAVTLWDVQGMSPIFHASE-------AHSA----PCRGIC-FSPS---NEALLVSVGYDKKINIYDIRS-QASTDRLT  248 (673)
T ss_pred             cCCeEEEEeccCCCcccchhh-------hccC----CcCcce-ecCC---ccceEEEecccceEEEeeccc-ccccceee
Confidence            689999999998888777764       6755    444554 9997   344899999999999999996 55555555


Q ss_pred             cCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeE
Q 021291          250 VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVL  288 (314)
Q Consensus       250 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~  288 (314)
                       ...+...++|.++|.+|+.|...|.|..||++..+...
T Consensus       249 -y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv  286 (673)
T KOG4378|consen  249 -YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPV  286 (673)
T ss_pred             -ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCc
Confidence             36799999999999999999999999999999776543

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.80  E-value=1.5e-17  Score=136.66  Aligned_cols=253  Identities=17%  Similarity=0.229  Sum_probs=164.6

Q ss_pred             EEEEcc---CCCEEEEecCCCeEEEEeCCCCeE------EEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeC
Q 021291           23 DVCFHQ---TKPILFAGTTGGELRIWDTVQHRT------VSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI   93 (314)
Q Consensus        23 ~~~~~~---~~~~l~s~~~dg~v~iwd~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~   93 (314)
                      +..|++   ...+|+.+..||.|.++|.+....      +.....|...  |..+.|.|  ....|++++.|.++++||+
T Consensus        54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nA--ifDl~wap--ge~~lVsasGDsT~r~Wdv  129 (720)
T KOG0321|consen   54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNA--IFDLKWAP--GESLLVSASGDSTIRPWDV  129 (720)
T ss_pred             cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccce--eEeeccCC--CceeEEEccCCceeeeeee
Confidence            366766   346899999999999999875332      3455678755  99999999  7789999999999999999


Q ss_pred             CCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCc---------ee----ee------c-------
Q 021291           94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE---------TV----DT------D-------  147 (314)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~----~~------~-------  147 (314)
                      ++.++....++..+........|.+...........++...+|+++-..         ..    ..      .       
T Consensus       130 k~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k  209 (720)
T KOG0321|consen  130 KTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRK  209 (720)
T ss_pred             ccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccc
Confidence            9998877544555666666666666665555666666777777764322         00    00      0       


Q ss_pred             CCCCCC-------ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCC
Q 021291          148 SLCDSK-------DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQG  220 (314)
Q Consensus       148 ~~~~~~-------~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g  220 (314)
                      -..+..       +.+..| +..++.+|..|+.|+|||++.............-....|+.. .-.+++   +.-|.. |
T Consensus       210 ~kA~s~ti~ssvTvv~fkD-e~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skr-s~G~~n---L~lDss-G  283 (720)
T KOG0321|consen  210 WKAASNTIFSSVTVVLFKD-ESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKR-SVGQVN---LILDSS-G  283 (720)
T ss_pred             cccccCceeeeeEEEEEec-cceeeeccCCCcceEEEeecccccccccCCCcccCccCcccc-eeeeEE---EEecCC-C
Confidence            000111       222234 345666666799999999998776544432211111122111 112333   333432 5


Q ss_pred             ceEEEEeecCCcEEEEEccCCC-CceEeeecCCcceEEE--EEeCCCCeEEEecCCCcEEEEecCCCee
Q 021291          221 FVNVLAGYEDGSILVWDIRNPG-IPLTAMKVHLEPVLCL--SIDESCNGGISGGADQKIVLYNLDHSTY  286 (314)
Q Consensus       221 ~~~l~~g~~dg~i~vwd~~~~~-~~~~~~~~h~~~v~~~--~~~~~~~~l~s~s~dg~i~iw~~~~~~~  286 (314)
                      . +|++.+.|+.|++|++.... .++..+.++...-.-+  ..+|++.+|++|+.|...++|.+.+.+.
T Consensus       284 t-~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~  351 (720)
T KOG0321|consen  284 T-YLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEA  351 (720)
T ss_pred             C-eEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccC
Confidence            5 66666679999999998633 4566666554322222  2389999999999999999999998764

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=1e-17  Score=132.69  Aligned_cols=230  Identities=11%  Similarity=0.153  Sum_probs=168.3

Q ss_pred             ceEEecCCCCceeEEEEccCCC-EEEEecCCCeEEEEeCCCCeEEE--EEeccCCcccEEEEEEcccCCCCeEEEeecCC
Q 021291           10 PVAVLRGHRASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVS--SSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (314)
Q Consensus        10 ~~~~l~~h~~~v~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg   86 (314)
                      .++.+.--..+|.+++|.|+|. .+++++...-++.||+.+.+...  .+.++.. ..+.....+|  ++++|+..+..|
T Consensus       249 ~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~-~~~e~FeVSh--d~~fia~~G~~G  325 (514)
T KOG2055|consen  249 KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEE-KSMERFEVSH--DSNFIAIAGNNG  325 (514)
T ss_pred             hheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCccc-chhheeEecC--CCCeEEEcccCc
Confidence            4555555677899999999998 89999999999999999876433  3334432 3477888999  999999999999


Q ss_pred             eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEE
Q 021291           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV  166 (314)
Q Consensus        87 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (314)
                      .|.+--..+++++.    +++.......                                       ++|+.+++.+++ 
T Consensus       326 ~I~lLhakT~eli~----s~KieG~v~~---------------------------------------~~fsSdsk~l~~-  361 (514)
T KOG2055|consen  326 HIHLLHAKTKELIT----SFKIEGVVSD---------------------------------------FTFSSDSKELLA-  361 (514)
T ss_pred             eEEeehhhhhhhhh----eeeeccEEee---------------------------------------EEEecCCcEEEE-
Confidence            99999999988755    3332222211                                       458888877775 


Q ss_pred             eecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccC-----C
Q 021291          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN-----P  241 (314)
Q Consensus       167 ~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~-----~  241 (314)
                      +|+ +|.|.+||++...++..+...         +..  .-++++ .+++   +. +||+|+..|.|.|||.++     .
T Consensus       362 ~~~-~GeV~v~nl~~~~~~~rf~D~---------G~v--~gts~~-~S~n---g~-ylA~GS~~GiVNIYd~~s~~~s~~  424 (514)
T KOG2055|consen  362 SGG-TGEVYVWNLRQNSCLHRFVDD---------GSV--HGTSLC-ISLN---GS-YLATGSDSGIVNIYDGNSCFASTN  424 (514)
T ss_pred             EcC-CceEEEEecCCcceEEEEeec---------Ccc--ceeeee-ecCC---Cc-eEEeccCcceEEEeccchhhccCC
Confidence            444 699999999999999988731         111  223333 5565   44 999999999999999653     2


Q ss_pred             CCceEeeecCCcceEEEEEeCCCCeEEEecC--CCcEEEEecCCCee----------eEeeeeeeecCCCceec
Q 021291          242 GIPLTAMKVHLEPVLCLSIDESCNGGISGGA--DQKIVLYNLDHSTY----------VLFGIGFVCDQEGNKFG  303 (314)
Q Consensus       242 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~--dg~i~iw~~~~~~~----------~~~~~~~~~~~~~~~~~  303 (314)
                      .+|+..+..-...|++|.|+++++.|+.+|.  +..+|+-.+.+...          +-....++++|.+..++
T Consensus       425 PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lA  498 (514)
T KOG2055|consen  425 PKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLA  498 (514)
T ss_pred             CCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEE
Confidence            4677778777889999999999999877775  56788877664432          22334456667666554

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=1.2e-17  Score=126.54  Aligned_cols=200  Identities=12%  Similarity=0.193  Sum_probs=144.0

Q ss_pred             CCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCC
Q 021291           16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN   95 (314)
Q Consensus        16 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~   95 (314)
                      -|.-.|..+-....+.+|++++.|..|.+|+++ |+.+..+......  -+..+.+|  +|+++++++.---|++|.+--
T Consensus       185 kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~--n~~aavSP--~GRFia~~gFTpDVkVwE~~f  259 (420)
T KOG2096|consen  185 KHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSS--NYDAAVSP--DGRFIAVSGFTPDVKVWEPIF  259 (420)
T ss_pred             hcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccccc--ccceeeCC--CCcEEEEecCCCCceEEEEEe
Confidence            466677777777788999999999999999988 8999888776633  77889999  999999999988999998732


Q ss_pred             ---CCCCC-CCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCceEEEe
Q 021291           96 ---GGLSS-NPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVA  167 (314)
Q Consensus        96 ---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~  167 (314)
                         ++... ...+.+                                          .+|+.    ++|+++..+++  +
T Consensus       260 ~kdG~fqev~rvf~L------------------------------------------kGH~saV~~~aFsn~S~r~v--t  295 (420)
T KOG2096|consen  260 TKDGTFQEVKRVFSL------------------------------------------KGHQSAVLAAAFSNSSTRAV--T  295 (420)
T ss_pred             ccCcchhhhhhhhee------------------------------------------ccchhheeeeeeCCCcceeE--E
Confidence               21110 112222                                          33333    67899887665  6


Q ss_pred             ecCcCeEEEEecCCC----c---eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccC
Q 021291          168 GEQLSEVEIWDLNTA----E---RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (314)
Q Consensus       168 g~~d~~i~vwd~~~~----~---~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~  240 (314)
                      .+.||++++||+.-.    +   .+.....+      -|.  ..+....+. .+|.   |+ .|+.. ....++++..+.
T Consensus       296 vSkDG~wriwdtdVrY~~~qDpk~Lk~g~~p------l~a--ag~~p~RL~-lsP~---g~-~lA~s-~gs~l~~~~se~  361 (420)
T KOG2096|consen  296 VSKDGKWRIWDTDVRYEAGQDPKILKEGSAP------LHA--AGSEPVRLE-LSPS---GD-SLAVS-FGSDLKVFASED  361 (420)
T ss_pred             EecCCcEEEeeccceEecCCCchHhhcCCcc------hhh--cCCCceEEE-eCCC---Cc-EEEee-cCCceEEEEccc
Confidence            778999999998532    2   22222100      121  123344676 9998   54 44444 456899999998


Q ss_pred             CCCceEeee-cCCcceEEEEEeCCCCeEEEecCCCcEEEEe
Q 021291          241 PGIPLTAMK-VHLEPVLCLSIDESCNGGISGGADQKIVLYN  280 (314)
Q Consensus       241 ~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~  280 (314)
                       ++...+++ .|...|.+++|+++|++++|++ |..+++..
T Consensus       362 -g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  362 -GKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             -CccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence             66665554 7999999999999999999986 66788775

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.79  E-value=4.4e-17  Score=122.27  Aligned_cols=246  Identities=13%  Similarity=0.181  Sum_probs=177.6

Q ss_pred             cCCCCceeEEEEcc-CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCC-CCeEEEeecCCeEEEEe
Q 021291           15 RGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIG-LNKVISQGRDGTVKCWD   92 (314)
Q Consensus        15 ~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~v~iwd   92 (314)
                      .+|.-.|..+.|-| |.-.+.+++.|.+++|||..+.+....|+..   +.|++-+++|... .-++++|..|-.|++-|
T Consensus        98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me---~~VYshamSp~a~sHcLiA~gtr~~~VrLCD  174 (397)
T KOG4283|consen   98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKME---GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCD  174 (397)
T ss_pred             ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecC---ceeehhhcChhhhcceEEEEecCCCcEEEEe
Confidence            46888999999999 6668999999999999999998888887654   4499999998533 23566778888999999


Q ss_pred             CCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeec--------------CCCCCC----c
Q 021291           93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTD--------------SLCDSK----D  154 (314)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~----~  154 (314)
                      +.++.+..  .+..+........+++............+....|+++........              -..|.+    +
T Consensus       175 i~SGs~sH--~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngl  252 (397)
T KOG4283|consen  175 IASGSFSH--TLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGL  252 (397)
T ss_pred             ccCCccee--eeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeee
Confidence            99998855  455555566666667666666777777788888988765211111              223333    8


Q ss_pred             eeccCCCceEEEeecCcCeEEEEecCCCceee-eecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcE
Q 021291          155 DVPAEGPKYMAVAGEQLSEVEIWDLNTAERCT-RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI  233 (314)
Q Consensus       155 ~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~-~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i  233 (314)
                      +|..++.+++.  .+.|..+++|+..+|+... .+-..      .|.. ..+..+.+.+-+.    +  .++---.++.+
T Consensus       253 a~tSd~~~l~~--~gtd~r~r~wn~~~G~ntl~~~g~~------~~n~-~~~~~~~~~~~~s----~--vfv~~p~~~~l  317 (397)
T KOG4283|consen  253 AWTSDARYLAS--CGTDDRIRVWNMESGRNTLREFGPI------IHNQ-TTSFAVHIQSMDS----D--VFVLFPNDGSL  317 (397)
T ss_pred             eecccchhhhh--ccCccceEEeecccCcccccccccc------cccc-cccceEEEeeccc----c--eEEEEecCCeE
Confidence            99999987763  4457899999998876422 22110      1211 1112222221111    2  33333445899


Q ss_pred             EEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEec
Q 021291          234 LVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL  281 (314)
Q Consensus       234 ~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~  281 (314)
                      .++++-. +..+..+..|-..|.+..+.|+-+...+|+.|+.|..|-.
T Consensus       318 all~~~s-gs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  318 ALLNLLE-GSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             EEEEccC-ceEEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence            9999998 8999999999889999999999889999999999999987

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=6.9e-18  Score=136.58  Aligned_cols=233  Identities=15%  Similarity=0.156  Sum_probs=152.1

Q ss_pred             ceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEe-ccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW-VHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (314)
Q Consensus        10 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v   88 (314)
                      .-+.|.||++.|+|++|+.+|.+|++|+.|-.+.|||.-..+.+..+. +|.  ..|.++.|.|..+...+++|..|..|
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHt--aNIFsvKFvP~tnnriv~sgAgDk~i  119 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHT--ANIFSVKFVPYTNNRIVLSGAGDKLI  119 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccc--cceeEEeeeccCCCeEEEeccCcceE
Confidence            345788999999999999999999999999999999998777777664 677  44999999997666789999999999


Q ss_pred             EEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCceE
Q 021291           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYM  164 (314)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  164 (314)
                      +++|+...+-..    .-+.......                                ....|..    ++-.|++.+.+
T Consensus       120 ~lfdl~~~~~~~----~d~~~~~~~~--------------------------------~~~cht~rVKria~~p~~Phtf  163 (758)
T KOG1310|consen  120 KLFDLDSSKEGG----MDHGMEETTR--------------------------------CWSCHTDRVKRIATAPNGPHTF  163 (758)
T ss_pred             EEEecccccccc----cccCccchhh--------------------------------hhhhhhhhhhheecCCCCCceE
Confidence            999998533111    0000000000                                0111111    56678887776


Q ss_pred             EEeecCcCeEEEEecCCCceeeeec-c-cccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCC
Q 021291          165 AVAGEQLSEVEIWDLNTAERCTRLH-Q-NSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG  242 (314)
Q Consensus       165 ~~~g~~d~~i~vwd~~~~~~~~~~~-~-~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~  242 (314)
                      . ++++||+|+-||++....-..-. . ....+  -+.  ......++. .+|..+   .+|++|+.|-..++||.+...
T Consensus       164 w-sasEDGtirQyDiREph~c~p~~~~~~~l~n--y~~--~lielk~lt-isp~rp---~~laVGgsdpfarLYD~Rr~l  234 (758)
T KOG1310|consen  164 W-SASEDGTIRQYDIREPHVCNPDEDCPSILVN--YNP--QLIELKCLT-ISPSRP---YYLAVGGSDPFARLYDRRRVL  234 (758)
T ss_pred             E-EecCCcceeeecccCCccCCccccccHHHHH--hch--hhheeeeee-ecCCCC---ceEEecCCCchhhhhhhhhhc
Confidence            6 57789999999999743211000 0 00000  010  122345565 888754   399999999999999954210


Q ss_pred             C-----------------ceEeee-cCC--------cc---eEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291          243 I-----------------PLTAMK-VHL--------EP---VLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF  289 (314)
Q Consensus       243 ~-----------------~~~~~~-~h~--------~~---v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~  289 (314)
                      +                 ++.-+. +|.        ..   ++-+.|+|+|.-|...=..-.|+++|+..++....
T Consensus       235 ks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~  310 (758)
T KOG1310|consen  235 KSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTP  310 (758)
T ss_pred             cCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence            0                 122111 222        12   45677899987554433334699999998876653

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=1.2e-17  Score=127.62  Aligned_cols=220  Identities=12%  Similarity=0.178  Sum_probs=143.0

Q ss_pred             CCCceEEecCCCCceeEEEEcc--CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCc-ccEEEEEEcccCCCCeEEEee
Q 021291            7 PPDPVAVLRGHRASVTDVCFHQ--TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAA-HGIVSVATGPSIGLNKVISQG   83 (314)
Q Consensus         7 ~~~~~~~l~~h~~~v~~~~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~s~~   83 (314)
                      .++.+..|++|...++.++|..  ....+.+|+.||+|++||++.......+....++ .+-.|++.+-  .++.+++|.
T Consensus        59 tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nc--k~~ii~~Gt  136 (376)
T KOG1188|consen   59 TGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNC--KKNIIACGT  136 (376)
T ss_pred             chhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccC--cCCeEEecc
Confidence            3567889999999999999987  4678999999999999999987665554432221 4567777765  557777775


Q ss_pred             c----CCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccC
Q 021291           84 R----DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAE  159 (314)
Q Consensus        84 ~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (314)
                      .    |-.|.+||++..+.........+......                                        +.|+|.
T Consensus       137 E~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~----------------------------------------lrFHP~  176 (376)
T KOG1188|consen  137 ELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQ----------------------------------------LRFHPS  176 (376)
T ss_pred             ccccCceEEEEEEeccccchhhhhhhhccCccee----------------------------------------EEecCC
Confidence            4    66899999998764211111112211111                                        568899


Q ss_pred             CCceEEEeecCcCeEEEEecCCCce----eeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEE
Q 021291          160 GPKYMAVAGEQLSEVEIWDLNTAER----CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV  235 (314)
Q Consensus       160 ~~~~~~~~g~~d~~i~vwd~~~~~~----~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~v  235 (314)
                      ..++++ +|+.||-|.+||+.....    ..++.             ....+-.+. |..+   +...|.+-+...+..+
T Consensus       177 ~pnlLl-SGSvDGLvnlfD~~~d~EeDaL~~viN-------------~~sSI~~ig-w~~~---~ykrI~clTH~Etf~~  238 (376)
T KOG1188|consen  177 DPNLLL-SGSVDGLVNLFDTKKDNEEDALLHVIN-------------HGSSIHLIG-WLSK---KYKRIMCLTHMETFAI  238 (376)
T ss_pred             CCCeEE-eecccceEEeeecCCCcchhhHHHhhc-------------ccceeeeee-eecC---CcceEEEEEccCceeE
Confidence            888876 788999999999975431    12222             122233333 4443   2112444444444555


Q ss_pred             EEccCC------------------------------------------------------------CCceEeeec-CCcc
Q 021291          236 WDIRNP------------------------------------------------------------GIPLTAMKV-HLEP  254 (314)
Q Consensus       236 wd~~~~------------------------------------------------------------~~~~~~~~~-h~~~  254 (314)
                      |++...                                                            .+.+..+.+ |...
T Consensus       239 ~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~ei  318 (376)
T KOG1188|consen  239 YELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEI  318 (376)
T ss_pred             EEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHH
Confidence            544320                                                            123334444 5667


Q ss_pred             eEEEEEeCCCCeEEEecCCCcEEEEecCCCee
Q 021291          255 VLCLSIDESCNGGISGGADQKIVLYNLDHSTY  286 (314)
Q Consensus       255 v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~  286 (314)
                      |.++.|...+.++.||+.||.+.+|..+....
T Consensus       319 VR~i~~~~~~~~l~TGGEDG~l~~Wk~~da~e  350 (376)
T KOG1188|consen  319 VRDILFDVKNDVLYTGGEDGLLQAWKVEDATE  350 (376)
T ss_pred             HHHHhhhcccceeeccCCCceEEEEecCCccc
Confidence            88888888888999999999999999754443

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=1.8e-16  Score=123.51  Aligned_cols=256  Identities=14%  Similarity=0.212  Sum_probs=176.9

Q ss_pred             CCceEEecC-CCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC
Q 021291            8 PDPVAVLRG-HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (314)
Q Consensus         8 ~~~~~~l~~-h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg   86 (314)
                      ++|++.... |.+.|.|++|...+++|++|+.+++|.+.|+++.+.+..+......+.|+.+..+|  ..+.|++.+.++
T Consensus        94 ~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P--~DN~~~~~t~~~  171 (609)
T KOG4227|consen   94 PKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHP--TDNTLIVVTRAK  171 (609)
T ss_pred             CCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCC--CCceEEEEecCc
Confidence            366766654 55899999999999999999999999999999998888775444334599999999  668999999999


Q ss_pred             eEEEEeCCCCCCCCCCeeeee-cceeeEEEeeeeeccccccccCCCCcceeeccCCceeeec------CCCCC-C---ce
Q 021291           87 TVKCWDIENGGLSSNPSLTIK-TNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTD------SLCDS-K---DD  155 (314)
Q Consensus        87 ~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~---~~  155 (314)
                      .|.+||.+.......+..... ........|.+............+...+|+++........      +.... .   .-
T Consensus       172 ~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~  251 (609)
T KOG4227|consen  172 LVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSL  251 (609)
T ss_pred             eEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhhee
Confidence            999999987653322222222 2233445555555555556666677788888765433222      11111 1   77


Q ss_pred             eccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCC---ceeeeEEEecCCCCCCceEEEEeecCCc
Q 021291          156 VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGR---GMCMAVQAYLPSKSQGFVNVLAGYEDGS  232 (314)
Q Consensus       156 ~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~---~~~~~~~~~~p~~~~g~~~l~~g~~dg~  232 (314)
                      |+|.|..+++.-  ....-.+||+-+.++.. ++.       .|.....   ..+-+++ |.-+     +-+++|+.+-.
T Consensus       252 ~~~~G~Q~msiR--R~~~P~~~D~~S~R~~V-~k~-------D~N~~GY~N~~T~KS~~-F~~D-----~~v~tGSD~~~  315 (609)
T KOG4227|consen  252 WSPSGNQFMSIR--RGKCPLYFDFISQRCFV-LKS-------DHNPNGYCNIKTIKSMT-FIDD-----YTVATGSDHWG  315 (609)
T ss_pred             eCCCCCeehhhh--ccCCCEEeeeeccccee-Eec-------cCCCCcceeeeeeeeee-eecc-----eeeeccCcccc
Confidence            999999887532  22345678887655432 221       2322111   1122333 6533     26999999999


Q ss_pred             EEEEEccCC----C------------------CceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEec
Q 021291          233 ILVWDIRNP----G------------------IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL  281 (314)
Q Consensus       233 i~vwd~~~~----~------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~  281 (314)
                      |++|.+...    +                  ..+..+++|..-++.+.|++...+|++.+..+.+++|.-
T Consensus       316 i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~  386 (609)
T KOG4227|consen  316 IHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD  386 (609)
T ss_pred             eEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence            999987421    1                  134568899999999999999999999999999999964

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.77  E-value=7.5e-17  Score=125.51  Aligned_cols=170  Identities=18%  Similarity=0.215  Sum_probs=129.3

Q ss_pred             EEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcc
Q 021291           55 SSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKD  134 (314)
Q Consensus        55 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (314)
                      .+.+|.  ++|..++|+|.+| ..+++||+|.+|.||++-.+.+.....                               
T Consensus        76 ~v~GHt--~~vLDi~w~PfnD-~vIASgSeD~~v~vW~IPe~~l~~~lt-------------------------------  121 (472)
T KOG0303|consen   76 LVCGHT--APVLDIDWCPFND-CVIASGSEDTKVMVWQIPENGLTRDLT-------------------------------  121 (472)
T ss_pred             CccCcc--ccccccccCccCC-ceeecCCCCceEEEEECCCcccccCcc-------------------------------
Confidence            456788  4599999999855 899999999999999998765433111                               


Q ss_pred             eeeccCCceeeecCCCCCC----ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeE
Q 021291          135 CYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAV  210 (314)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  210 (314)
                              .....+.+|+.    ++|+|...++|+++|+ |.+|.+||+.+++.+.++.         |    ...++++
T Consensus       122 --------epvv~L~gH~rrVg~V~wHPtA~NVLlsag~-Dn~v~iWnv~tgeali~l~---------h----pd~i~S~  179 (472)
T KOG0303|consen  122 --------EPVVELYGHQRRVGLVQWHPTAPNVLLSAGS-DNTVSIWNVGTGEALITLD---------H----PDMVYSM  179 (472)
T ss_pred             --------cceEEEeecceeEEEEeecccchhhHhhccC-CceEEEEeccCCceeeecC---------C----CCeEEEE
Confidence                    01112233333    6799999888886665 8999999999999887765         4    5589999


Q ss_pred             EEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCc-ceEEEEEeCCCCeEEEec---CCCcEEEEecCCCee
Q 021291          211 QAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE-PVLCLSIDESCNGGISGG---ADQKIVLYNLDHSTY  286 (314)
Q Consensus       211 ~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~s---~dg~i~iw~~~~~~~  286 (314)
                      . |+-+   |. ++++.+.|+.|+|||.+. +.++.+-.+|.+ .-..+.|-.+|..+.||-   .+..+-+||.+.-+.
T Consensus       180 s-fn~d---Gs-~l~TtckDKkvRv~dpr~-~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~e  253 (472)
T KOG0303|consen  180 S-FNRD---GS-LLCTTCKDKKVRVIDPRR-GTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEE  253 (472)
T ss_pred             E-eccC---Cc-eeeeecccceeEEEcCCC-CcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccC
Confidence            8 9988   44 899999999999999998 888888888876 345667878887444432   477899998765543

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=2.7e-16  Score=115.02  Aligned_cols=213  Identities=17%  Similarity=0.275  Sum_probs=146.5

Q ss_pred             CCCCCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeE------EEEEe--ccC---CcccEEEEEEcc
Q 021291            4 RPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT------VSSSW--VHS---AAHGIVSVATGP   72 (314)
Q Consensus         4 ~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~------~~~~~--~~~---~~~~v~~~~~~~   72 (314)
                      .|+...++..+++|.++|+.++|.  ..+|++|+. |.|+=|.......      +...+  .+.   .--.|.+|...|
T Consensus        48 ~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP  124 (325)
T KOG0649|consen   48 EPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDP  124 (325)
T ss_pred             CCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEecc
Confidence            455556777889999999999998  346777654 9999998764322      11111  111   012388999998


Q ss_pred             cCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCC
Q 021291           73 SIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDS  152 (314)
Q Consensus        73 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (314)
                        ..+.++.++.|+.++-||+++++...  .+..++...+....                                    
T Consensus       125 --~enSi~~AgGD~~~y~~dlE~G~i~r--~~rGHtDYvH~vv~------------------------------------  164 (325)
T KOG0649|consen  125 --SENSILFAGGDGVIYQVDLEDGRIQR--EYRGHTDYVHSVVG------------------------------------  164 (325)
T ss_pred             --CCCcEEEecCCeEEEEEEecCCEEEE--EEcCCcceeeeeee------------------------------------
Confidence              66777777789999999999998744  44444444443311                                    


Q ss_pred             CceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCC----CCceeeeEEEecCCCCCCceEEEEee
Q 021291          153 KDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSK----GRGMCMAVQAYLPSKSQGFVNVLAGY  228 (314)
Q Consensus       153 ~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~----~~~~~~~~~~~~p~~~~g~~~l~~g~  228 (314)
                         -+..+ .++  +|++||++++||.++++++..+..-      .|...    ....+.+++ -+.+      ++++|+
T Consensus       165 ---R~~~~-qil--sG~EDGtvRvWd~kt~k~v~~ie~y------k~~~~lRp~~g~wigala-~~ed------WlvCGg  225 (325)
T KOG0649|consen  165 ---RNANG-QIL--SGAEDGTVRVWDTKTQKHVSMIEPY------KNPNLLRPDWGKWIGALA-VNED------WLVCGG  225 (325)
T ss_pred             ---cccCc-cee--ecCCCccEEEEeccccceeEEeccc------cChhhcCcccCceeEEEe-ccCc------eEEecC
Confidence               12233 334  7999999999999999998877632      12111    223456665 4443      888886


Q ss_pred             cCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCC
Q 021291          229 EDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH  283 (314)
Q Consensus       229 ~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~  283 (314)
                       ...+.+|.++. .++...+.- ..+|..+.|..+  .+++++..+.|.-|.+..
T Consensus       226 -Gp~lslwhLrs-se~t~vfpi-pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~G  275 (325)
T KOG0649|consen  226 -GPKLSLWHLRS-SESTCVFPI-PARVHLVDFVDD--CVLIGGEGNHVQSYTLNG  275 (325)
T ss_pred             -CCceeEEeccC-CCceEEEec-ccceeEeeeecc--eEEEeccccceeeeeecc
Confidence             45799999998 777777763 678889999887  678888888888887763

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.76  E-value=2.7e-15  Score=123.16  Aligned_cols=253  Identities=15%  Similarity=0.153  Sum_probs=152.4

Q ss_pred             ceEEecCCCCceeEEEEccCCCEEEEe-cCCCeEEEEeCCC-CeE--EEEEeccCCcccEEEEEEcccCCCCeEEEeec-
Q 021291           10 PVAVLRGHRASVTDVCFHQTKPILFAG-TTGGELRIWDTVQ-HRT--VSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-   84 (314)
Q Consensus        10 ~~~~l~~h~~~v~~~~~~~~~~~l~s~-~~dg~v~iwd~~~-~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-   84 (314)
                      .++++. +.+....++++|++++|+++ ..++.|.+|+++. ++.  +.... ..  .....++++|  ++++|++++. 
T Consensus        27 ~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~--~~p~~i~~~~--~g~~l~v~~~~  100 (330)
T PRK11028         27 LLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LP--GSPTHISTDH--QGRFLFSASYN  100 (330)
T ss_pred             eeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CC--CCceEEEECC--CCCEEEEEEcC
Confidence            455554 34667889999999988765 4588899999863 332  22222 12  2367899999  9898887765 


Q ss_pred             CCeEEEEeCCCCCCCCCCeeeeec-ceeeEEEeeeeeccccccccCCCCcceeeccCCceee-------ecCCCCCC--c
Q 021291           85 DGTVKCWDIENGGLSSNPSLTIKT-NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVD-------TDSLCDSK--D  154 (314)
Q Consensus        85 dg~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~--~  154 (314)
                      ++.|.+|++++.....+....... ...+...+++................+|++.....+.       ....+...  +
T Consensus       101 ~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~  180 (330)
T PRK11028        101 ANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHM  180 (330)
T ss_pred             CCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceE
Confidence            889999999743222111111111 1223334444443333344445667777776533221       11112111  8


Q ss_pred             eeccCCCceEEEeecCcCeEEEEecCC--Cc--eeeeecccccCCCCCcCC--CCCceeeeEEEecCCCCCCceEEEEee
Q 021291          155 DVPAEGPKYMAVAGEQLSEVEIWDLNT--AE--RCTRLHQNSCGGSPNFSS--KGRGMCMAVQAYLPSKSQGFVNVLAGY  228 (314)
Q Consensus       155 ~~~~~~~~~~~~~g~~d~~i~vwd~~~--~~--~~~~~~~~~~~~~~~h~~--~~~~~~~~~~~~~p~~~~g~~~l~~g~  228 (314)
                      +|+|+|++++++ ...+++|.+||+..  ++  .+..+.        .++.  ........+. ++|+   |+ +++++.
T Consensus       181 ~~~pdg~~lyv~-~~~~~~v~v~~~~~~~~~~~~~~~~~--------~~p~~~~~~~~~~~i~-~~pd---g~-~lyv~~  246 (330)
T PRK11028        181 VFHPNQQYAYCV-NELNSSVDVWQLKDPHGEIECVQTLD--------MMPADFSDTRWAADIH-ITPD---GR-HLYACD  246 (330)
T ss_pred             EECCCCCEEEEE-ecCCCEEEEEEEeCCCCCEEEEEEEe--------cCCCcCCCCccceeEE-ECCC---CC-EEEEec
Confidence            999999887764 44479999999973  22  222222        1111  0111233465 9998   66 566654


Q ss_pred             -cCCcEEEEEccCCCCceEeeecC---CcceEEEEEeCCCCeEEEecC-CCcEEEEecCC
Q 021291          229 -EDGSILVWDIRNPGIPLTAMKVH---LEPVLCLSIDESCNGGISGGA-DQKIVLYNLDH  283 (314)
Q Consensus       229 -~dg~i~vwd~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~l~s~s~-dg~i~iw~~~~  283 (314)
                       .++.|.+|++...+..+ .+.++   ......+.++|+|++|+++.. ++.|.+|+++.
T Consensus       247 ~~~~~I~v~~i~~~~~~~-~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~  305 (330)
T PRK11028        247 RTASLISVFSVSEDGSVL-SFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG  305 (330)
T ss_pred             CCCCeEEEEEEeCCCCeE-EEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence             57899999997533222 22222   124567899999999987765 89999998863

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=2.4e-16  Score=130.50  Aligned_cols=216  Identities=15%  Similarity=0.212  Sum_probs=158.9

Q ss_pred             CCCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC
Q 021291            6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD   85 (314)
Q Consensus         6 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (314)
                      ...++.+.+..-.+.|++++.+|.+..++.|+.||.+..++...++...........++|.+++|+|  ++..+++|+.|
T Consensus        98 ~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~--~~~~i~~Gs~D  175 (691)
T KOG2048|consen   98 HTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNP--TGTKIAGGSID  175 (691)
T ss_pred             ccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecC--CccEEEecccC
Confidence            3456777778888999999999999999999999988888888776655443344447799999999  98999999999


Q ss_pred             CeEEEEeCCCCCCCCCCeeeeecce----eeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCC
Q 021291           86 GTVKCWDIENGGLSSNPSLTIKTNS----YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGP  161 (314)
Q Consensus        86 g~v~iwd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (314)
                      |.|++||...+....  ..+.+...    ...+.+++.                                    +-.++ 
T Consensus       176 g~Iriwd~~~~~t~~--~~~~~~d~l~k~~~~iVWSv~------------------------------------~Lrd~-  216 (691)
T KOG2048|consen  176 GVIRIWDVKSGQTLH--IITMQLDRLSKREPTIVWSVL------------------------------------FLRDS-  216 (691)
T ss_pred             ceEEEEEcCCCceEE--EeeecccccccCCceEEEEEE------------------------------------EeecC-
Confidence            999999999876422  11111111    122222221                                    22444 


Q ss_pred             ceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCC
Q 021291          162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP  241 (314)
Q Consensus       162 ~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~  241 (314)
                       .++ +|...|+|.+||...+..+..+.        .|    ..-+.+++ -.+++   . .+++++.|+.|.-|.....
T Consensus       217 -tI~-sgDS~G~V~FWd~~~gTLiqS~~--------~h----~adVl~La-v~~~~---d-~vfsaGvd~~ii~~~~~~~  277 (691)
T KOG2048|consen  217 -TIA-SGDSAGTVTFWDSIFGTLIQSHS--------CH----DADVLALA-VADNE---D-RVFSAGVDPKIIQYSLTTN  277 (691)
T ss_pred             -cEE-EecCCceEEEEcccCcchhhhhh--------hh----hcceeEEE-EcCCC---C-eEEEccCCCceEEEEecCC
Confidence             243 78778999999999999988877        45    44677776 66653   3 8999999999988887753


Q ss_pred             CC---ceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCC
Q 021291          242 GI---PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH  283 (314)
Q Consensus       242 ~~---~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~  283 (314)
                      ..   .......|...|.+++..++  .|++|+.|..+.+-..+.
T Consensus       278 ~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~  320 (691)
T KOG2048|consen  278 KSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE  320 (691)
T ss_pred             ccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccc
Confidence            33   22334578889999999888  789999999888765544

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=7.3e-16  Score=112.77  Aligned_cols=195  Identities=16%  Similarity=0.209  Sum_probs=136.5

Q ss_pred             CceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCC
Q 021291           19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL   98 (314)
Q Consensus        19 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~   98 (314)
                      ..|+++-..|..+-++.++.|+.++-||+++|+..+.+++|.  +.|.++.--.  ....+++|++||++++||.+++++
T Consensus       115 PeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHt--DYvH~vv~R~--~~~qilsG~EDGtvRvWd~kt~k~  190 (325)
T KOG0649|consen  115 PEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHT--DYVHSVVGRN--ANGQILSGAEDGTVRVWDTKTQKH  190 (325)
T ss_pred             CccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCc--ceeeeeeecc--cCcceeecCCCccEEEEeccccce
Confidence            578999999977777777799999999999999999999999  5599998855  557899999999999999999987


Q ss_pred             CCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC---ceeccCCCceEEEeecCcCeEE
Q 021291           99 SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK---DDVPAEGPKYMAVAGEQLSEVE  175 (314)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~d~~i~  175 (314)
                      ++  .+....++  .+                                 ++.|-+   .++.-+.+ .++ +|. ...+.
T Consensus       191 v~--~ie~yk~~--~~---------------------------------lRp~~g~wigala~~ed-Wlv-CGg-Gp~ls  230 (325)
T KOG0649|consen  191 VS--MIEPYKNP--NL---------------------------------LRPDWGKWIGALAVNED-WLV-CGG-GPKLS  230 (325)
T ss_pred             eE--EeccccCh--hh---------------------------------cCcccCceeEEEeccCc-eEE-ecC-CCcee
Confidence            55  22222111  11                                 000000   22333333 343 444 47899


Q ss_pred             EEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcce
Q 021291          176 IWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPV  255 (314)
Q Consensus       176 vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v  255 (314)
                      +|.++..++...|+.             .+.+-.+. |..+      .++++++.+.|.-|.+.  +..-..........
T Consensus       231 lwhLrsse~t~vfpi-------------pa~v~~v~-F~~d------~vl~~G~g~~v~~~~l~--Gvl~a~ip~~s~~c  288 (325)
T KOG0649|consen  231 LWHLRSSESTCVFPI-------------PARVHLVD-FVDD------CVLIGGEGNHVQSYTLN--GVLQANIPVESTAC  288 (325)
T ss_pred             EEeccCCCceEEEec-------------ccceeEee-eecc------eEEEeccccceeeeeec--cEEEEeccCCccce
Confidence            999999999888873             33455555 7765      78888888899999887  55555555444555


Q ss_pred             EEEEEeCC-CCeEEEecCCCcEEEE
Q 021291          256 LCLSIDES-CNGGISGGADQKIVLY  279 (314)
Q Consensus       256 ~~~~~~~~-~~~l~s~s~dg~i~iw  279 (314)
                      ++..|+.. .++|-.++....+.|+
T Consensus       289 ~s~s~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  289 YSASWQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             eeecccCCceEEEEecccceeeeee
Confidence            66666332 3455556666677665

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.74  E-value=2.1e-16  Score=118.40  Aligned_cols=203  Identities=17%  Similarity=0.201  Sum_probs=144.2

Q ss_pred             CCCCceeEEEEcc-CCCEEEEecCCCeEEEEeCCCCe---EEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEE
Q 021291           16 GHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHR---TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW   91 (314)
Q Consensus        16 ~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iw   91 (314)
                      .+.+++++..|+. +.+++.+++-|-+..|||++++.   ....+-.|..+  |..++|... ..+.|++++.||.|++|
T Consensus       148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKE--V~DIaf~~~-s~~~FASvgaDGSvRmF  224 (364)
T KOG0290|consen  148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKE--VYDIAFLKG-SRDVFASVGADGSVRMF  224 (364)
T ss_pred             ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcc--eeEEEeccC-ccceEEEecCCCcEEEE
Confidence            3567899999998 88899999999999999999863   35556678844  999999982 34689999999999999


Q ss_pred             eCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCc
Q 021291           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL  171 (314)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d  171 (314)
                      |++..+... .+++-........                              .        ++|++...+++++-+...
T Consensus       225 DLR~leHST-IIYE~p~~~~pLl------------------------------R--------LswnkqDpnymATf~~dS  265 (364)
T KOG0290|consen  225 DLRSLEHST-IIYEDPSPSTPLL------------------------------R--------LSWNKQDPNYMATFAMDS  265 (364)
T ss_pred             Eecccccce-EEecCCCCCCcce------------------------------e--------eccCcCCchHHhhhhcCC
Confidence            999764321 0111111000000                              0        668888888777656556


Q ss_pred             CeEEEEecCCCc-eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCC-----ce
Q 021291          172 SEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI-----PL  245 (314)
Q Consensus       172 ~~i~vwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~-----~~  245 (314)
                      ..|.+.|+|... .+..+.        +|    .+.+..++ |.|..+  . .|++++.|..+.+||+.....     ++
T Consensus       266 ~~V~iLDiR~P~tpva~L~--------~H----~a~VNgIa-WaPhS~--~-hictaGDD~qaliWDl~q~~~~~~~dPi  329 (364)
T KOG0290|consen  266 NKVVILDIRVPCTPVARLR--------NH----QASVNGIA-WAPHSS--S-HICTAGDDCQALIWDLQQMPRENGEDPI  329 (364)
T ss_pred             ceEEEEEecCCCcceehhh--------cC----cccccceE-ecCCCC--c-eeeecCCcceEEEEecccccccCCCCch
Confidence            789999999654 566666        67    45667776 999843  2 899999999999999986433     33


Q ss_pred             EeeecCCcceEEEEEeC-CCCeEEEecCCCcEEE
Q 021291          246 TAMKVHLEPVLCLSIDE-SCNGGISGGADQKIVL  278 (314)
Q Consensus       246 ~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~i~i  278 (314)
                      ..+. -.+.|+.+.|++ ...+++.+. ++++.+
T Consensus       330 lay~-a~~EVNqi~Ws~~~~Dwiai~~-~kklei  361 (364)
T KOG0290|consen  330 LAYT-AGGEVNQIQWSSSQPDWIAICF-GKKLEI  361 (364)
T ss_pred             hhhh-ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence            3344 367899999963 445666654 444544

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.74  E-value=2.5e-16  Score=124.75  Aligned_cols=254  Identities=13%  Similarity=0.141  Sum_probs=174.2

Q ss_pred             CceEEecCCCCceeEEEEcc-CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCe
Q 021291            9 DPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (314)
                      .-+..+..|..+|.++.|+| +-..+++.++||+|++-|++++..-..+........+..+.|+.  +...++.+..=|.
T Consensus       225 d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~--e~~~vl~~~~~G~  302 (498)
T KOG4328|consen  225 DGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSA--ESRSVLFGDNVGN  302 (498)
T ss_pred             CceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccC--CCccEEEeecccc
Confidence            45778889999999999999 66789999999999999998764333333222224577888888  6677777777779


Q ss_pred             EEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceee---ecCCCCCC----ceeccCC
Q 021291           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVD---TDSLCDSK----DDVPAEG  160 (314)
Q Consensus        88 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~----~~~~~~~  160 (314)
                      ..+||.+++...-. .+.++...+....+.+................+|+++......   .....|..    ..|||.+
T Consensus       303 f~~iD~R~~~s~~~-~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~  381 (498)
T KOG4328|consen  303 FNVIDLRTDGSEYE-NLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSG  381 (498)
T ss_pred             eEEEEeecCCccch-hhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCC
Confidence            99999998764221 2344555666666677766666666777778899987654322   23334444    8899999


Q ss_pred             CceEEEeecCcCeEEEEecC----CCceeeeecccccCCCCCcCCCCC--ceeeeEEEecCCCCCCceEEEEeecCCcEE
Q 021291          161 PKYMAVAGEQLSEVEIWDLN----TAERCTRLHQNSCGGSPNFSSKGR--GMCMAVQAYLPSKSQGFVNVLAGYEDGSIL  234 (314)
Q Consensus       161 ~~~~~~~g~~d~~i~vwd~~----~~~~~~~~~~~~~~~~~~h~~~~~--~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~  234 (314)
                      ..+ + +.+.|..|+|||..    .-.+..++.         |.....  -..... .|.|+.+    ++++|..-..|-
T Consensus       382 gtl-~-TT~~D~~IRv~dss~~sa~~~p~~~I~---------Hn~~t~RwlT~fKA-~W~P~~~----li~vg~~~r~ID  445 (498)
T KOG4328|consen  382 GTL-L-TTCQDNEIRVFDSSCISAKDEPLGTIP---------HNNRTGRWLTPFKA-AWDPDYN----LIVVGRYPRPID  445 (498)
T ss_pred             Cce-E-eeccCCceEEeecccccccCCccceee---------ccCcccccccchhh-eeCCCcc----EEEEeccCccee
Confidence            884 4 45568999999983    334444444         322111  122233 3999744    999999999999


Q ss_pred             EEEccCCCCceEeeecCCc-ceEE-EEEeCCCCeEEEe-cCCCcEEEEecC
Q 021291          235 VWDIRNPGIPLTAMKVHLE-PVLC-LSIDESCNGGISG-GADQKIVLYNLD  282 (314)
Q Consensus       235 vwd~~~~~~~~~~~~~h~~-~v~~-~~~~~~~~~l~s~-s~dg~i~iw~~~  282 (314)
                      |+|-.. ++.+.++..... .|.+ ..|+|-+..+++| +..|.|+||--+
T Consensus       446 v~~~~~-~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k  495 (498)
T KOG4328|consen  446 VFDGNG-GQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK  495 (498)
T ss_pred             EEcCCC-CEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence            999886 776766544333 5555 4679988745555 457888888644

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.74  E-value=6.7e-16  Score=134.04  Aligned_cols=220  Identities=19%  Similarity=0.297  Sum_probs=150.8

Q ss_pred             CCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccC-CcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCC
Q 021291           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS-AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG   96 (314)
Q Consensus        18 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~   96 (314)
                      ..+-..+.|+|-...++++...-.|+|||.+.++.+..|..+. ....|+.+.+-...|..++++|+.||.|+||+--..
T Consensus      1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred             CCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence            3345678888877788888866789999999999988886543 224699999987667789999999999999975433


Q ss_pred             CCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEE
Q 021291           97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI  176 (314)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v  176 (314)
                      ... ++.+        ...+.......   ....+...+                  ++|.....++++ +|. -..|+|
T Consensus      1144 ~~~-~~eL--------VTaw~~Ls~~~---~~~r~~~~v------------------~dWqQ~~G~Ll~-tGd-~r~IRI 1191 (1387)
T KOG1517|consen 1144 KWK-KPEL--------VTAWSSLSDQL---PGARGTGLV------------------VDWQQQSGHLLV-TGD-VRSIRI 1191 (1387)
T ss_pred             ccC-Ccee--------EEeeccccccC---ccCCCCCee------------------eehhhhCCeEEe-cCC-eeEEEE
Confidence            210 0010        01111000000   000000000                  456666555554 565 489999


Q ss_pred             EecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCC--ceEeeecCCcc
Q 021291          177 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI--PLTAMKVHLEP  254 (314)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~--~~~~~~~h~~~  254 (314)
                      ||.........++.       +    ....++++.   ++-..|. .+++|..||.|++||.|....  .+...+.|+..
T Consensus      1192 WDa~~E~~~~diP~-------~----s~t~vTaLS---~~~~~gn-~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~ 1256 (1387)
T KOG1517|consen 1192 WDAHKEQVVADIPY-------G----SSTLVTALS---ADLVHGN-IIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDV 1256 (1387)
T ss_pred             EecccceeEeeccc-------C----CCccceeec---ccccCCc-eEEEeecCCceEEeecccCCccccceeecccCCc
Confidence            99998887777763       1    233455544   3333355 999999999999999986433  67788889887


Q ss_pred             --eEEEEEeCCCCe-EEEecCCCcEEEEecCCC
Q 021291          255 --VLCLSIDESCNG-GISGGADQKIVLYNLDHS  284 (314)
Q Consensus       255 --v~~~~~~~~~~~-l~s~s~dg~i~iw~~~~~  284 (314)
                        |..+.+.++|.- |++||.||.|++||++..
T Consensus      1257 ~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1257 EPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred             ccceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence              999999776655 999999999999999984

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.74  E-value=7.1e-16  Score=117.05  Aligned_cols=215  Identities=14%  Similarity=0.168  Sum_probs=159.0

Q ss_pred             eEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCC---eEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCe
Q 021291           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH---RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (314)
Q Consensus        11 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (314)
                      +..+.--..+|+|.+|++|+..+|.+-....|.||.....   +...+++.|..  .|+++.|+|  ..+.|++|+.|..
T Consensus         3 ~~~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~--~vtgvdWap--~snrIvtcs~drn   78 (361)
T KOG1523|consen    3 VVVFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDK--IVTGVDWAP--KSNRIVTCSHDRN   78 (361)
T ss_pred             eEEeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCc--ceeEEeecC--CCCceeEccCCCC
Confidence            3455555689999999999999999999999999997654   46677888884  499999999  8899999999999


Q ss_pred             EEEEeC-CCCCCCCCCeeeee-cceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEE
Q 021291           88 VKCWDI-ENGGLSSNPSLTIK-TNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA  165 (314)
Q Consensus        88 v~iwd~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (314)
                      -++|.. ..++...  .+.+. .+....+                                       +.|+|.++.+. 
T Consensus        79 ayVw~~~~~~~Wkp--tlvLlRiNrAAt~---------------------------------------V~WsP~enkFA-  116 (361)
T KOG1523|consen   79 AYVWTQPSGGTWKP--TLVLLRINRAATC---------------------------------------VKWSPKENKFA-  116 (361)
T ss_pred             ccccccCCCCeecc--ceeEEEeccceee---------------------------------------EeecCcCceEE-
Confidence            999999 4444322  32222 2222222                                       56999987554 


Q ss_pred             EeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccC-----
Q 021291          166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN-----  240 (314)
Q Consensus       166 ~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~-----  240 (314)
                       .|+..+.|.||=.+..+.--.-+        .-..++++.+.++. |+|++-    ++++|+.|+..+||..--     
T Consensus       117 -VgSgar~isVcy~E~ENdWWVsK--------hikkPirStv~sld-WhpnnV----LlaaGs~D~k~rVfSayIK~Vde  182 (361)
T KOG1523|consen  117 -VGSGARLISVCYYEQENDWWVSK--------HIKKPIRSTVTSLD-WHPNNV----LLAAGSTDGKCRVFSAYIKGVDE  182 (361)
T ss_pred             -eccCccEEEEEEEecccceehhh--------hhCCccccceeeee-ccCCcc----eecccccCcceeEEEEeeecccc
Confidence             35545888888776544321111        11233577889998 999733    899999999999997521     


Q ss_pred             ------------CCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCe
Q 021291          241 ------------PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST  285 (314)
Q Consensus       241 ------------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~  285 (314)
                                  .++++.++....+.|..+.|+|+|..|+-.+.|..+.+=|...+.
T Consensus       183 kpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  183 KPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             CCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence                        023344555567899999999999999999999999999988775

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.74  E-value=6.4e-16  Score=118.47  Aligned_cols=262  Identities=15%  Similarity=0.180  Sum_probs=169.0

Q ss_pred             CCceeEEEEccCCCEEEEecCCCeEEEEeCCCCe-----EEEEEeccCC----------cccEEEEEEcccCCCCeEEEe
Q 021291           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-----TVSSSWVHSA----------AHGIVSVATGPSIGLNKVISQ   82 (314)
Q Consensus        18 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-----~~~~~~~~~~----------~~~v~~~~~~~~~~~~~l~s~   82 (314)
                      .+-|.++.|...|.+||||..+|.|.++.-+...     ....++.|..          ...|..+.|.+..+...++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            4578899999999999999999999999754322     2334444432          135889999985555678888


Q ss_pred             ecCCeEEEEeCCCCCCCC------------------CCeeee--------------ecceeeEEEeeeeeccccccccCC
Q 021291           83 GRDGTVKCWDIENGGLSS------------------NPSLTI--------------KTNSYHFCKLSLVKEPYANAKQAN  130 (314)
Q Consensus        83 ~~dg~v~iwd~~~~~~~~------------------~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~  130 (314)
                      ..|.+|++|.+.......                  .|+...              ..+..+...++..........++.
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADd  184 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADD  184 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccc
Confidence            899999999986543322                  111110              112333344444444445555556


Q ss_pred             CCcceeeccCCc--eeeecCCCCCC---------ceeccCCCceEEEeecCcCeEEEEecCCCce----eeeecccccCC
Q 021291          131 EPKDCYEREVGE--TVDTDSLCDSK---------DDVPAEGPKYMAVAGEQLSEVEIWDLNTAER----CTRLHQNSCGG  195 (314)
Q Consensus       131 ~~~~~~~~~~~~--~~~~~~~~~~~---------~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~----~~~~~~~~~~~  195 (314)
                      .....|.+.-..  .-......+.-         ..|+|..-++++.+.+ .|+|++-|+|...+    ...+..+..+.
T Consensus       185 LRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSS-KGtIrLcDmR~~aLCd~hsKlfEepedp~  263 (433)
T KOG1354|consen  185 LRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSS-KGTIRLCDMRQSALCDAHSKLFEEPEDPS  263 (433)
T ss_pred             eeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecC-CCcEEEeechhhhhhcchhhhhccccCCc
Confidence            666666654322  11111122211         6789988888877666 69999999995432    11222221112


Q ss_pred             CCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCC------------cce---EEEEE
Q 021291          196 SPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL------------EPV---LCLSI  260 (314)
Q Consensus       196 ~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~------------~~v---~~~~~  260 (314)
                      ....-.+.-..+..+. |+++   |+ ++++-.. -+|++||+....+++.++.-|.            +.|   ..++|
T Consensus       264 ~rsffseiIsSISDvK-Fs~s---Gr-yilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~  337 (433)
T KOG1354|consen  264 SRSFFSEIISSISDVK-FSHS---GR-YILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSW  337 (433)
T ss_pred             chhhHHHHhhhhhceE-EccC---Cc-EEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEE
Confidence            2222223445677787 9987   76 7777643 5899999976688888888774            233   35788


Q ss_pred             eCCCCeEEEecCCCcEEEEecCCCee
Q 021291          261 DESCNGGISGGADQKIVLYNLDHSTY  286 (314)
Q Consensus       261 ~~~~~~l~s~s~dg~i~iw~~~~~~~  286 (314)
                      +.++.+++|||....+++++...|..
T Consensus       338 sg~~~~v~TGsy~n~frvf~~~~gsk  363 (433)
T KOG1354|consen  338 SGNDSYVMTGSYNNVFRVFNLARGSK  363 (433)
T ss_pred             cCCcceEecccccceEEEecCCCCcc
Confidence            99999999999999999999766643

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.73  E-value=1.4e-17  Score=140.90  Aligned_cols=250  Identities=16%  Similarity=0.227  Sum_probs=174.5

Q ss_pred             ceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEE
Q 021291           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (314)
Q Consensus        10 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~   89 (314)
                      .++.|.||..+|.|+.|...|.++++|+.|..|+||..+++.++...++|.+.  |+.++.+.  +..+++++|.|..|+
T Consensus       182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~d--itdlavs~--~n~~iaaaS~D~vIr  257 (1113)
T KOG0644|consen  182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGD--ITDLAVSS--NNTMIAAASNDKVIR  257 (1113)
T ss_pred             HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccc--cchhccch--hhhhhhhcccCceEE
Confidence            35567799999999999999999999999999999999999999999999966  99999998  778899999999999


Q ss_pred             EEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCC--cee---------------------ee
Q 021291           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVG--ETV---------------------DT  146 (314)
Q Consensus        90 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---------------------~~  146 (314)
                      +|.+.++..+.  ++..+........|++..     .....+...+|+.+-.  ...                     ..
T Consensus       258 vWrl~~~~pvs--vLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~  330 (1113)
T KOG0644|consen  258 VWRLPDGAPVS--VLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDR  330 (1113)
T ss_pred             EEecCCCchHH--HHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccc
Confidence            99999987655  444455555544444433     1222223333333200  000                     00


Q ss_pred             cCCC--------CCC--ceeccCC----------CceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCce
Q 021291          147 DSLC--------DSK--DDVPAEG----------PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGM  206 (314)
Q Consensus       147 ~~~~--------~~~--~~~~~~~----------~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~  206 (314)
                      ...+        |.-  ++|....          ..+.+ +.-.+-.+.+|++.++.....+.        +|.+    .
T Consensus       331 f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~-~ar~~~~~~vwnl~~g~l~H~l~--------ghsd----~  397 (1113)
T KOG0644|consen  331 FLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVV-TARNDHRLCVWNLYTGQLLHNLM--------GHSD----E  397 (1113)
T ss_pred             cccccCCcccccchhhHhhhhccceEEEeccccccccce-eeeeeeEeeeeecccchhhhhhc--------cccc----c
Confidence            0000        000  2222111          11111 23335668889999998877776        6755    4


Q ss_pred             eeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCee
Q 021291          207 CMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTY  286 (314)
Q Consensus       207 ~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~  286 (314)
                      .+.+. ++|-++   ....+++.||...|||+-. +.+++........+..-+|+++|..++....-|.+.|.....++.
T Consensus       398 ~yvLd-~Hpfn~---ri~msag~dgst~iwdi~e-g~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s  472 (1113)
T KOG0644|consen  398 VYVLD-VHPFNP---RIAMSAGYDGSTIIWDIWE-GIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKS  472 (1113)
T ss_pred             eeeee-ecCCCc---HhhhhccCCCceEeeeccc-CCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCcc
Confidence            55555 777633   2778899999999999998 777766553355667779999999988888889999998876655


Q ss_pred             eE
Q 021291          287 VL  288 (314)
Q Consensus       287 ~~  288 (314)
                      ..
T Consensus       473 ~k  474 (1113)
T KOG0644|consen  473 QK  474 (1113)
T ss_pred             cc
Confidence            43

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=2.4e-15  Score=128.12  Aligned_cols=269  Identities=17%  Similarity=0.192  Sum_probs=171.6

Q ss_pred             ecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCC-CeEEEeecCCeEEEEe
Q 021291           14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGL-NKVISQGRDGTVKCWD   92 (314)
Q Consensus        14 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~v~iwd   92 (314)
                      +-|-...-..-.|++|+++++....+ .|.||...+++++..+..|.  .+++.+.+.|.... .++++++.||.|++||
T Consensus        12 lgg~n~~~~~avfSnD~k~l~~~~~~-~V~VyS~~Tg~~i~~l~~~~--a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd   88 (792)
T KOG1963|consen   12 LGGRNGNKSPAVFSNDAKFLFLCTGN-FVKVYSTATGECITSLEDHT--APLTSVIVLPSSENANYLIVCSLDGTIRVWD   88 (792)
T ss_pred             eccccceecccccccCCcEEEEeeCC-EEEEEecchHhhhhhccccc--CccceeeecCCCccceEEEEEecCccEEEec
Confidence            44444444456789999988876655 79999999999999999998  45999999985332 4677999999999999


Q ss_pred             CCCCCCCCCCeeeeecceeeEEEeeeeeccccccc----------c-----CCCCcceeeccCCcee-eecCCCC---CC
Q 021291           93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAK----------Q-----ANEPKDCYEREVGETV-DTDSLCD---SK  153 (314)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-----~~~~~~~~~~~~~~~~-~~~~~~~---~~  153 (314)
                      ...+.+++  .+....... ...+.+.........          .     .........+...... ......+   ..
T Consensus        89 ~~~~~Llk--t~~~~~~v~-~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~  165 (792)
T KOG1963|consen   89 WSDGELLK--TFDNNLPVH-ALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKS  165 (792)
T ss_pred             CCCcEEEE--EEecCCcee-EEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCcc
Confidence            99988765  222222211 111111111100000          0     0000111111111100 0111112   22


Q ss_pred             ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcE
Q 021291          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI  233 (314)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i  233 (314)
                      +.+++.|+...++-   +..+.+|+...... .....   -....|    .-.+.+.+ ++|+   ++ ++++|..||.|
T Consensus       166 I~~~~~ge~~~i~~---~~~~~~~~v~~~~~-~~~~~---~~~~~H----tf~~t~~~-~spn---~~-~~Aa~d~dGrI  229 (792)
T KOG1963|consen  166 IVDNNSGEFKGIVH---MCKIHIYFVPKHTK-HTSSR---DITVHH----TFNITCVA-LSPN---ER-YLAAGDSDGRI  229 (792)
T ss_pred             EEEcCCceEEEEEE---eeeEEEEEecccce-eeccc---hhhhhh----cccceeEE-eccc---cc-eEEEeccCCcE
Confidence            77888887665432   46789998877551 11110   001123    22356666 9998   55 99999999999


Q ss_pred             EEEEccC---CCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe------eeeeeecCCCceece
Q 021291          234 LVWDIRN---PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF------GIGFVCDQEGNKFGT  304 (314)
Q Consensus       234 ~vwd~~~---~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~------~~~~~~~~~~~~~~~  304 (314)
                      .+|.--.   ...-...+.-|.+.|++++|+++|.+|.||+.+|.+.+|.++++++.+.      +..+..+|++..+..
T Consensus       230 ~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl  309 (792)
T KOG1963|consen  230 LVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSL  309 (792)
T ss_pred             EEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEE
Confidence            9996432   1234567888999999999999999999999999999999999986553      566777788776554

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.73  E-value=1.2e-16  Score=130.72  Aligned_cols=203  Identities=18%  Similarity=0.226  Sum_probs=153.6

Q ss_pred             eEEecCCCCceeEEEEccCCCEEEEecCC---CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCe
Q 021291           11 VAVLRGHRASVTDVCFHQTKPILFAGTTG---GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (314)
Q Consensus        11 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (314)
                      ++..-.|...|..+.|+..|.||++...+   ..|.|+++...+...-|+...  +.|.++.|+|  ...+|+.++. ..
T Consensus       514 v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~ksk--G~vq~v~FHP--s~p~lfVaTq-~~  588 (733)
T KOG0650|consen  514 VCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSK--GLVQRVKFHP--SKPYLFVATQ-RS  588 (733)
T ss_pred             eEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcC--CceeEEEecC--CCceEEEEec-cc
Confidence            34445689999999999999999997654   479999998776666665555  3499999999  7677777775 58


Q ss_pred             EEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEe
Q 021291           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA  167 (314)
Q Consensus        88 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (314)
                      |+|||+....+++    .+.........                                      ++++|.|.+++  .
T Consensus       589 vRiYdL~kqelvK----kL~tg~kwiS~--------------------------------------msihp~GDnli--~  624 (733)
T KOG0650|consen  589 VRIYDLSKQELVK----KLLTGSKWISS--------------------------------------MSIHPNGDNLI--L  624 (733)
T ss_pred             eEEEehhHHHHHH----HHhcCCeeeee--------------------------------------eeecCCCCeEE--E
Confidence            9999998866544    22222221111                                      55889999887  4


Q ss_pred             ecCcCeEEEEecCCCc-eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccC------
Q 021291          168 GEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN------  240 (314)
Q Consensus       168 g~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~------  240 (314)
                      |+.|+.+..||+.-.. +.+++.        -|    ...+.+++ |++.-+    ++++|+.||++.|+.-.-      
T Consensus       625 gs~d~k~~WfDldlsskPyk~lr--------~H----~~avr~Va-~H~ryP----Lfas~sdDgtv~Vfhg~VY~Dl~q  687 (733)
T KOG0650|consen  625 GSYDKKMCWFDLDLSSKPYKTLR--------LH----EKAVRSVA-FHKRYP----LFASGSDDGTVIVFHGMVYNDLLQ  687 (733)
T ss_pred             ecCCCeeEEEEcccCcchhHHhh--------hh----hhhhhhhh-hccccc----eeeeecCCCcEEEEeeeeehhhhc
Confidence            7789999999998554 444454        45    34667776 998755    899999999999985431      


Q ss_pred             -C-CCceEeeecCCcc----eEEEEEeCCCCeEEEecCCCcEEEE
Q 021291          241 -P-GIPLTAMKVHLEP----VLCLSIDESCNGGISGGADQKIVLY  279 (314)
Q Consensus       241 -~-~~~~~~~~~h~~~----v~~~~~~~~~~~l~s~s~dg~i~iw  279 (314)
                       + -.++..+.+|...    |..+.|+|...+|++++.||+|++|
T Consensus       688 npliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  688 NPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             CCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence             0 2357788899765    9999999999999999999999998

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.73  E-value=1.5e-15  Score=133.71  Aligned_cols=227  Identities=16%  Similarity=0.276  Sum_probs=153.7

Q ss_pred             CCceEEecCCCCceeEEEEccC-CCEEEEecCCCeEEEEeCCCC-------eEEEEEeccCCcccEEEEEEcccCCCCeE
Q 021291            8 PDPVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQH-------RTVSSSWVHSAAHGIVSVATGPSIGLNKV   79 (314)
Q Consensus         8 ~~~~~~l~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l   79 (314)
                      +..+..|..|...|..++.+++ +.+++|||.||+|++||..+-       +...++....  .++.++...+  .++.+
T Consensus      1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~--sr~~~vt~~~--~~~~~ 1113 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEG--SRVEKVTMCG--NGDQF 1113 (1431)
T ss_pred             ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccC--CceEEEEecc--CCCeE
Confidence            3568888889999999999884 499999999999999998642       2222332222  5699999999  89999


Q ss_pred             EEeecCCeEEEEeCCCCCCCCCCeeeee--cceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceec
Q 021291           80 ISQGRDGTVKCWDIENGGLSSNPSLTIK--TNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVP  157 (314)
Q Consensus        80 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (314)
                      |.++.||.|++.+++.............  ......+..++                                   .++.
T Consensus      1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m-----------------------------------~a~~ 1158 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSM-----------------------------------HAFT 1158 (1431)
T ss_pred             EEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEe-----------------------------------eccc
Confidence            9999999999999986321110000000  00000000000                                   1122


Q ss_pred             cCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEE
Q 021291          158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD  237 (314)
Q Consensus       158 ~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd  237 (314)
                      ...+..+++.+..-+.|..||+++.....+++.          ....|.+++++ .+|.   +. +++.|+..|.+.+||
T Consensus      1159 ~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~----------~~~hG~vTSi~-idp~---~~-WlviGts~G~l~lWD 1223 (1431)
T KOG1240|consen 1159 AIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN----------QLRHGLVTSIV-IDPW---CN-WLVIGTSRGQLVLWD 1223 (1431)
T ss_pred             ccccceeEEEEEeccceEEecchhhhhHHhhhc----------CccccceeEEE-ecCC---ce-EEEEecCCceEEEEE
Confidence            222222223455568899999998877666552          22467888887 9987   44 999999999999999


Q ss_pred             ccCCCCceEeee-cCCcceEEEEEeCCC---CeEEEec--CCCcEEEEecCCCeeeEe
Q 021291          238 IRNPGIPLTAMK-VHLEPVLCLSIDESC---NGGISGG--ADQKIVLYNLDHSTYVLF  289 (314)
Q Consensus       238 ~~~~~~~~~~~~-~h~~~v~~~~~~~~~---~~l~s~s--~dg~i~iw~~~~~~~~~~  289 (314)
                      +|- +.++..+. .+..+|+.+..++-.   ...++++  ..+.|.+|++.++.+.+.
T Consensus      1224 LRF-~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~v 1280 (1431)
T KOG1240|consen 1224 LRF-RVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTV 1280 (1431)
T ss_pred             eec-CceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEE
Confidence            997 77777765 556788888886533   3444444  467899999999966554

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.73  E-value=5.7e-15  Score=114.23  Aligned_cols=199  Identities=15%  Similarity=0.244  Sum_probs=143.3

Q ss_pred             ceeEEEEccCCCEEEEecCC--CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCC
Q 021291           20 SVTDVCFHQTKPILFAGTTG--GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG   97 (314)
Q Consensus        20 ~v~~~~~~~~~~~l~s~~~d--g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~   97 (314)
                      .|..+-|+..  ++|..+.+  +.+++.+++++..+..+.-.   .+|.++.++.    ++|+.+-.+ .|.|||+++.+
T Consensus        48 ~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fp---t~IL~VrmNr----~RLvV~Lee-~IyIydI~~Mk  117 (391)
T KOG2110|consen   48 SIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTICEIFFP---TSILAVRMNR----KRLVVCLEE-SIYIYDIKDMK  117 (391)
T ss_pred             EEEEeecccc--eeEEEecCCCceEEEEEcccCceEEEEecC---CceEEEEEcc----ceEEEEEcc-cEEEEecccce
Confidence            3445556533  45544443  45899998888777766544   4599999977    677777765 49999999987


Q ss_pred             CCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEE
Q 021291           98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIW  177 (314)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vw  177 (314)
                      .... +.+...++...++++                                      ++..+.++..-.....|.|.+|
T Consensus       118 lLhT-I~t~~~n~~gl~AlS--------------------------------------~n~~n~ylAyp~s~t~GdV~l~  158 (391)
T KOG2110|consen  118 LLHT-IETTPPNPKGLCALS--------------------------------------PNNANCYLAYPGSTTSGDVVLF  158 (391)
T ss_pred             eehh-hhccCCCccceEeec--------------------------------------cCCCCceEEecCCCCCceEEEE
Confidence            6551 111122333333322                                      2233334433233345889999


Q ss_pred             ecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCc-EEEEEccCCCCceEeeecC--Ccc
Q 021291          178 DLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS-ILVWDIRNPGIPLTAMKVH--LEP  254 (314)
Q Consensus       178 d~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~-i~vwd~~~~~~~~~~~~~h--~~~  254 (314)
                      |..+.+....+.        +|    .+.+-+++ |+|+   |. +||++++.|+ |||+.+.+ ++.+.++.--  ...
T Consensus       159 d~~nl~~v~~I~--------aH----~~~lAala-fs~~---G~-llATASeKGTVIRVf~v~~-G~kl~eFRRG~~~~~  220 (391)
T KOG2110|consen  159 DTINLQPVNTIN--------AH----KGPLAALA-FSPD---GT-LLATASEKGTVIRVFSVPE-GQKLYEFRRGTYPVS  220 (391)
T ss_pred             EcccceeeeEEE--------ec----CCceeEEE-ECCC---CC-EEEEeccCceEEEEEEcCC-ccEeeeeeCCceeeE
Confidence            999999998888        77    66788887 9998   55 9999999998 89999998 8888888733  236


Q ss_pred             eEEEEEeCCCCeEEEecCCCcEEEEecCCCe
Q 021291          255 VLCLSIDESCNGGISGGADQKIVLYNLDHST  285 (314)
Q Consensus       255 v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~  285 (314)
                      |.+++|++++++|++.|..++|++|.++...
T Consensus       221 IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  221 IYSLSFSPDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             EEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence            8899999999999999999999999988654

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.72  E-value=4.1e-15  Score=115.03  Aligned_cols=219  Identities=11%  Similarity=0.158  Sum_probs=149.7

Q ss_pred             CCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC--eEEEEeCC
Q 021291           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG--TVKCWDIE   94 (314)
Q Consensus        17 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg--~v~iwd~~   94 (314)
                      -...+..+.|+.+...|..|+.|| .++|+.+.........  .....|.-+-|+.    .+++..+.+.  .+++.++.
T Consensus         4 ~~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~--~~~~~IvEmLFSS----SLvaiV~~~qpr~Lkv~~~K   76 (391)
T KOG2110|consen    4 KKPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKD--TEGVSIVEMLFSS----SLVAIVSIKQPRKLKVVHFK   76 (391)
T ss_pred             CCcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhccc--CCCeEEEEeeccc----ceeEEEecCCCceEEEEEcc
Confidence            345677888999999999999998 6899877644422221  2224577888876    5666555543  48888887


Q ss_pred             CCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeE
Q 021291           95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEV  174 (314)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i  174 (314)
                      .+..+.+  +.+...-                                           +++--+-++++++ =  ...|
T Consensus        77 k~~~ICe--~~fpt~I-------------------------------------------L~VrmNr~RLvV~-L--ee~I  108 (391)
T KOG2110|consen   77 KKTTICE--IFFPTSI-------------------------------------------LAVRMNRKRLVVC-L--EESI  108 (391)
T ss_pred             cCceEEE--EecCCce-------------------------------------------EEEEEccceEEEE-E--cccE
Confidence            6654331  1111100                                           1122223455543 2  3559


Q ss_pred             EEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEE--eecCCcEEEEEccCCCCceEeeecCC
Q 021291          175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA--GYEDGSILVWDIRNPGIPLTAMKVHL  252 (314)
Q Consensus       175 ~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~--g~~dg~i~vwd~~~~~~~~~~~~~h~  252 (314)
                      +|||+++.+.+.++..        -+.    ....+.+++|+.. +. +++-  ....|.|.+||+.+ -+++..+.+|.
T Consensus       109 yIydI~~MklLhTI~t--------~~~----n~~gl~AlS~n~~-n~-ylAyp~s~t~GdV~l~d~~n-l~~v~~I~aH~  173 (391)
T KOG2110|consen  109 YIYDIKDMKLLHTIET--------TPP----NPKGLCALSPNNA-NC-YLAYPGSTTSGDVVLFDTIN-LQPVNTINAHK  173 (391)
T ss_pred             EEEecccceeehhhhc--------cCC----CccceEeeccCCC-Cc-eEEecCCCCCceEEEEEccc-ceeeeEEEecC
Confidence            9999999999988872        111    1111224666633 33 5553  23468999999998 88999999999


Q ss_pred             cceEEEEEeCCCCeEEEecCCCc-EEEEecCCCeeeEe---------eeeeeecCCCceecee
Q 021291          253 EPVLCLSIDESCNGGISGGADQK-IVLYNLDHSTYVLF---------GIGFVCDQEGNKFGTT  305 (314)
Q Consensus       253 ~~v~~~~~~~~~~~l~s~s~dg~-i~iw~~~~~~~~~~---------~~~~~~~~~~~~~~~~  305 (314)
                      +++-+++|+++|.+|||+|..|+ |||+.+.+|++++.         +..+++++++..++.+
T Consensus       174 ~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~s  236 (391)
T KOG2110|consen  174 GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAAS  236 (391)
T ss_pred             CceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEe
Confidence            99999999999999999999996 89999999988874         4557788888877653

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=2.1e-15  Score=127.63  Aligned_cols=222  Identities=12%  Similarity=0.096  Sum_probs=139.5

Q ss_pred             ceEEecCCCCceeEEEEccCCCEEEEecCC---CeEEEEeCCCCeEE--EEEeccCCcccEEEEEEcccCCCCeEEEee-
Q 021291           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTG---GELRIWDTVQHRTV--SSSWVHSAAHGIVSVATGPSIGLNKVISQG-   83 (314)
Q Consensus        10 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-   83 (314)
                      ..+.+..|...+...+|+|||+.|+.++.+   ..|++||+.+++..  ..+.++     ...++|+|  |++.|+.++ 
T Consensus       195 ~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~-----~~~~~wSP--DG~~La~~~~  267 (429)
T PRK01742        195 NQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH-----NGAPAFSP--DGSRLAFASS  267 (429)
T ss_pred             CceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc-----cCceeECC--CCCEEEEEEe
Confidence            345677788899999999999999887654   47999999887543  222222     45789999  999888764 


Q ss_pred             cCCeEEEE--eCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCC
Q 021291           84 RDGTVKCW--DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGP  161 (314)
Q Consensus        84 ~dg~v~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (314)
                      .+|.+.||  |+.++...     .+.......                                      ...+|+|+|+
T Consensus       268 ~~g~~~Iy~~d~~~~~~~-----~lt~~~~~~--------------------------------------~~~~wSpDG~  304 (429)
T PRK01742        268 KDGVLNIYVMGANGGTPS-----QLTSGAGNN--------------------------------------TEPSWSPDGQ  304 (429)
T ss_pred             cCCcEEEEEEECCCCCeE-----eeccCCCCc--------------------------------------CCEEECCCCC
Confidence            68876665  55554321     111110000                                      0056999998


Q ss_pred             ceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCC
Q 021291          162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP  241 (314)
Q Consensus       162 ~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~  241 (314)
                      .++++ +..++...||++..........        ++    .+  .... |+|+   |+ .|+..+.++ +.+||+.+ 
T Consensus       305 ~i~f~-s~~~g~~~I~~~~~~~~~~~~l--------~~----~~--~~~~-~SpD---G~-~ia~~~~~~-i~~~Dl~~-  362 (429)
T PRK01742        305 SILFT-SDRSGSPQVYRMSASGGGASLV--------GG----RG--YSAQ-ISAD---GK-TLVMINGDN-VVKQDLTS-  362 (429)
T ss_pred             EEEEE-ECCCCCceEEEEECCCCCeEEe--------cC----CC--CCcc-CCCC---CC-EEEEEcCCC-EEEEECCC-
Confidence            77654 4456778888765322211221        12    11  2344 9998   55 666666554 66699987 


Q ss_pred             CCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecC--CCeeeEeeeeeeecCCCceeceeeccc
Q 021291          242 GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD--HSTYVLFGIGFVCDQEGNKFGTTWHIR  309 (314)
Q Consensus       242 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~w~~~  309 (314)
                      +........+  ....+.|+|+|++|+.++.++.+.+|++.  .++....+.+    .++......|++.
T Consensus       363 g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~----~~g~~~~p~wsp~  426 (429)
T PRK01742        363 GSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPG----SDGQVKFPAWSPY  426 (429)
T ss_pred             CCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccC----CCCCCCCcccCCC
Confidence            5433222222  33567899999999999999988888763  4555444432    3455556677764

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.72  E-value=3.2e-14  Score=120.80  Aligned_cols=251  Identities=22%  Similarity=0.387  Sum_probs=173.5

Q ss_pred             EecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCe-EEEEEeccCCcccEEEEEE-cccCCCC-eEEEeec-CCeE
Q 021291           13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-TVSSSWVHSAAHGIVSVAT-GPSIGLN-KVISQGR-DGTV   88 (314)
Q Consensus        13 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~v~~~~~-~~~~~~~-~l~s~~~-dg~v   88 (314)
                      .+.+|...+.++.|.+.+..++.++.|+.+.+|+...+. ....+..... ..+..+.+ .+  ++. .++..+. |+.+
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~d~~~  136 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD-SSVSKLALSSP--DGNSILLASSSLDGTV  136 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC-CceeeEEEECC--CcceEEeccCCCCccE
Confidence            467899999999999999999999999999999998876 6666666432 24777777 66  766 5555444 9999


Q ss_pred             EEEeCCC-CCCCCCCeeeeecceeeEEEeeeeecccccccc-CCCCcceeeccCCceeeecCCCCCC----ceeccCCCc
Q 021291           89 KCWDIEN-GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQ-ANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPK  162 (314)
Q Consensus        89 ~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  162 (314)
                      .+||... .....  .+..+........+.+... ...... .......|+....... ..+.+|..    ++|+|++..
T Consensus       137 ~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~  212 (466)
T COG2319         137 KLWDLSTPGKLIR--TLEGHSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGKPL-STLAGHTDPVSSLAFSPDGGL  212 (466)
T ss_pred             EEEEecCCCeEEE--EEecCcccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCceE-EeeccCCCceEEEEEcCCcce
Confidence            9999987 33221  2222333333333433333 111122 2555666666653322 22333444    888888873


Q ss_pred             eEEEeecCcCeEEEEecCCCceee-eecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCC
Q 021291          163 YMAVAGEQLSEVEIWDLNTAERCT-RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP  241 (314)
Q Consensus       163 ~~~~~g~~d~~i~vwd~~~~~~~~-~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~  241 (314)
                       ++++++.|+.|++||...+.... .+.        +|....    .. . |+|++   . ++++++.|+.+++|+.+..
T Consensus       213 -~~~~~~~d~~i~~wd~~~~~~~~~~~~--------~~~~~~----~~-~-~~~~~---~-~~~~~~~d~~~~~~~~~~~  273 (466)
T COG2319         213 -LIASGSSDGTIRLWDLSTGKLLRSTLS--------GHSDSV----VS-S-FSPDG---S-LLASGSSDGTIRLWDLRSS  273 (466)
T ss_pred             -EEEEecCCCcEEEEECCCCcEEeeecC--------CCCcce----eE-e-ECCCC---C-EEEEecCCCcEEEeeecCC
Confidence             33355779999999988777766 455        553321    11 3 99984   3 7889999999999999974


Q ss_pred             CCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291          242 GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF  289 (314)
Q Consensus       242 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~  289 (314)
                      ...+..+.+|...|.++.|+|++..+++++.|+.+.+|+.........
T Consensus       274 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  321 (466)
T COG2319         274 SSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSS  321 (466)
T ss_pred             CcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEE
Confidence            443555578899999999999888888899999999999887765544

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=3.5e-16  Score=121.96  Aligned_cols=253  Identities=15%  Similarity=0.148  Sum_probs=164.1

Q ss_pred             eEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCC------CeEEEEEeccCCcccEEEEEEcccCCCCeEEEeec
Q 021291           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ------HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (314)
Q Consensus        11 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (314)
                      .+-+.+|.+.|+++.|+.++++|++|+.|..+++|+++.      .+.+.. .+|.+...|.|++|..  ...++++|..
T Consensus        49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~-~~~~H~SNIF~L~F~~--~N~~~~SG~~  125 (609)
T KOG4227|consen   49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGV-MEHPHRSNIFSLEFDL--ENRFLYSGER  125 (609)
T ss_pred             hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCcee-ccCccccceEEEEEcc--CCeeEecCCC
Confidence            345678999999999999999999999999999999864      244443 3444446699999998  7789999999


Q ss_pred             CCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeecc---ccccccCCCCcceeeccCCcee-eecCCCCCC-----ce
Q 021291           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEP---YANAKQANEPKDCYEREVGETV-DTDSLCDSK-----DD  155 (314)
Q Consensus        85 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~  155 (314)
                      +++|.+-|+++.+.+-    ...........+.+...+   ........+.+.+|+++..... .-.+.....     +.
T Consensus       126 ~~~VI~HDiEt~qsi~----V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~  201 (609)
T KOG4227|consen  126 WGTVIKHDIETKQSIY----VANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAE  201 (609)
T ss_pred             cceeEeeecccceeee----eecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeee
Confidence            9999999999876432    222222122222222222   2333444556677777665422 222233322     78


Q ss_pred             eccCCCceEEEeecCcCeEEEEecCCCce-eeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEE
Q 021291          156 VPAEGPKYMAVAGEQLSEVEIWDLNTAER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL  234 (314)
Q Consensus       156 ~~~~~~~~~~~~g~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~  234 (314)
                      |+|....++++..+ .+-+-+||.+.... +......     .+-+.+ ...-+.+. |+|+   |. .+++--....-.
T Consensus       202 F~P~~P~Li~~~~~-~~G~~~~D~R~~~~~~~~~~~~-----~~L~~~-~~~~M~~~-~~~~---G~-Q~msiRR~~~P~  269 (609)
T KOG4227|consen  202 FHPETPALILVNSE-TGGPNVFDRRMQARPVYQRSMF-----KGLPQE-NTEWMGSL-WSPS---GN-QFMSIRRGKCPL  269 (609)
T ss_pred             ecCCCceeEEeccc-cCCCCceeeccccchHHhhhcc-----ccCccc-chhhhhee-eCCC---CC-eehhhhccCCCE
Confidence            89999888886555 57799999986543 2221100     011111 11224555 9998   54 455555555666


Q ss_pred             EEEccCCCCceEeeecCC-------cceEEEEEeCCCCeEEEecCCCcEEEEecCCC
Q 021291          235 VWDIRNPGIPLTAMKVHL-------EPVLCLSIDESCNGGISGGADQKIVLYNLDHS  284 (314)
Q Consensus       235 vwd~~~~~~~~~~~~~h~-------~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~  284 (314)
                      +||+-+...++..+. |.       ..+.+++|-.+.. ++|||.+=.|++|.+...
T Consensus       270 ~~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~  324 (609)
T KOG4227|consen  270 YFDFISQRCFVLKSD-HNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRA  324 (609)
T ss_pred             EeeeecccceeEecc-CCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCC
Confidence            788876344444443 22       2577888877654 899999999999998644

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.70  E-value=2.5e-16  Score=129.84  Aligned_cols=209  Identities=15%  Similarity=0.241  Sum_probs=136.7

Q ss_pred             CCceeEEEEcc-CCCEEEEecCCCeEEEEeCCCC-------eEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEE
Q 021291           18 RASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQH-------RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (314)
Q Consensus        18 ~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~   89 (314)
                      ...|+.+.|.| |...||.++.||.|++|.+..+       .....+.+|...  |+++.|+|- ..+.|++++.|-+|+
T Consensus       627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eK--I~slRfHPL-AadvLa~asyd~Ti~  703 (1012)
T KOG1445|consen  627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEK--ITSLRFHPL-AADVLAVASYDSTIE  703 (1012)
T ss_pred             CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccce--EEEEEecch-hhhHhhhhhccceee
Confidence            45799999999 8889999999999999998753       234567778844  999999995 457899999999999


Q ss_pred             EEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeec
Q 021291           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE  169 (314)
Q Consensus        90 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  169 (314)
                      +||+.+++...    .+..+....  |.                                    ++|+|+|+.+.  +-+
T Consensus       704 lWDl~~~~~~~----~l~gHtdqI--f~------------------------------------~AWSpdGr~~A--tVc  739 (1012)
T KOG1445|consen  704 LWDLANAKLYS----RLVGHTDQI--FG------------------------------------IAWSPDGRRIA--TVC  739 (1012)
T ss_pred             eeehhhhhhhh----eeccCcCce--eE------------------------------------EEECCCCccee--eee
Confidence            99999986533    222221111  11                                    67999998654  444


Q ss_pred             CcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEee---cCCcEEEEEccCCC-Cce
Q 021291          170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY---EDGSILVWDIRNPG-IPL  245 (314)
Q Consensus       170 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~---~dg~i~vwd~~~~~-~~~  245 (314)
                      .||+|++|..++++....-.         . .+.......+. |.-+   |+.++++|.   ....|.+||..+.. .++
T Consensus       740 KDg~~rVy~Prs~e~pv~Eg---------~-gpvgtRgARi~-wacd---gr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl  805 (1012)
T KOG1445|consen  740 KDGTLRVYEPRSREQPVYEG---------K-GPVGTRGARIL-WACD---GRIVIVVGFDKSSERQVQMYDAQTLDLRPL  805 (1012)
T ss_pred             cCceEEEeCCCCCCCccccC---------C-CCccCcceeEE-EEec---CcEEEEecccccchhhhhhhhhhhccCCcc
Confidence            69999999999876432211         1 11222233333 5544   773444442   23568899877532 344


Q ss_pred             EeeecCCcc-eEEEEEeCCCC-eEEEecCCCcEEEEecCCCeee
Q 021291          246 TAMKVHLEP-VLCLSIDESCN-GGISGGADQKIVLYNLDHSTYV  287 (314)
Q Consensus       246 ~~~~~h~~~-v~~~~~~~~~~-~l~s~s~dg~i~iw~~~~~~~~  287 (314)
                      .+..--..+ +.--.+++|.. +++||-.|..|.+|++-....-
T Consensus       806 ~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy  849 (1012)
T KOG1445|consen  806 YTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPY  849 (1012)
T ss_pred             eeeeecccCccccccccCCCceEEEecCCCceEEEEEecCCCce
Confidence            433211111 11112355544 5688889999999998765543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.70  E-value=1.2e-14  Score=120.77  Aligned_cols=205  Identities=13%  Similarity=0.163  Sum_probs=126.7

Q ss_pred             CCCCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEe---------------------------
Q 021291            5 PPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW---------------------------   57 (314)
Q Consensus         5 ~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~---------------------------   57 (314)
                      +..+..+++|+||++.|.|++|+.||+.+|+|+.|..|.+|+..-.-.+ .+.                           
T Consensus        40 ~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-kYSH~D~IQCMsFNP~~h~LasCsLsdFgl  118 (1081)
T KOG1538|consen   40 TSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-KYSHNDAIQCMSFNPITHQLASCSLSDFGL  118 (1081)
T ss_pred             CCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-eeccCCeeeEeecCchHHHhhhcchhhccc
Confidence            3445678999999999999999999999999999999999985421111 110                           


Q ss_pred             ---------ccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeec-ceeeEEEeeeeeccccccc
Q 021291           58 ---------VHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKT-NSYHFCKLSLVKEPYANAK  127 (314)
Q Consensus        58 ---------~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  127 (314)
                               .|....+|.+++|..  ||++|+.|-.+|+|.|-+-...+.     ..+.. .......+++.+.+.....
T Consensus       119 WS~~qK~V~K~kss~R~~~CsWtn--DGqylalG~~nGTIsiRNk~gEek-----~~I~Rpgg~Nspiwsi~~~p~sg~G  191 (1081)
T KOG1538|consen  119 WSPEQKSVSKHKSSSRIICCSWTN--DGQYLALGMFNGTISIRNKNGEEK-----VKIERPGGSNSPIWSICWNPSSGEG  191 (1081)
T ss_pred             cChhhhhHHhhhhheeEEEeeecC--CCcEEEEeccCceEEeecCCCCcc-----eEEeCCCCCCCCceEEEecCCCCCC
Confidence                     122223455555555  899999999999999886543321     12221 2223333444443322211


Q ss_pred             cCCCCcceeeccCCc---eeeecCCC------CCC--ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCC
Q 021291          128 QANEPKDCYEREVGE---TVDTDSLC------DSK--DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGS  196 (314)
Q Consensus       128 ~~~~~~~~~~~~~~~---~~~~~~~~------~~~--~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~  196 (314)
                       ......+.+....-   .+...+.+      ...  +++.++|+++++  |+.|+.+.+|. +.|-.+-++..      
T Consensus       192 -~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~Li--GGsdk~L~~fT-R~GvrLGTvg~------  261 (1081)
T KOG1538|consen  192 -RNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILL--GGSDKQLSLFT-RDGVRLGTVGE------  261 (1081)
T ss_pred             -ccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEE--ccCCCceEEEe-ecCeEEeeccc------
Confidence             11111111211100   11111111      111  777899998775  44489999996 45655555431      


Q ss_pred             CCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEc
Q 021291          197 PNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI  238 (314)
Q Consensus       197 ~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~  238 (314)
                            ....++.++ ..|+   ++ .++.|+.||+|..|++
T Consensus       262 ------~D~WIWtV~-~~PN---sQ-~v~~GCqDGTiACyNl  292 (1081)
T KOG1538|consen  262 ------QDSWIWTVQ-AKPN---SQ-YVVVGCQDGTIACYNL  292 (1081)
T ss_pred             ------cceeEEEEE-EccC---Cc-eEEEEEccCeeehhhh
Confidence                  356899998 9998   55 8999999999998875

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.69  E-value=4.4e-14  Score=119.94  Aligned_cols=212  Identities=26%  Similarity=0.493  Sum_probs=155.0

Q ss_pred             CCceEEecCCCCceeEEEEccCCCEEEEecC-CCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCC-eEEEeecC
Q 021291            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTT-GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLN-KVISQGRD   85 (314)
Q Consensus         8 ~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~d   85 (314)
                      ......+.+|...|.+++|+|++.++++++. |+.+++|+..+++.+..+..|..  .|.+++|+|  ++. .+++++.|
T Consensus       145 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~--~~~~~~~~~~~d  220 (466)
T COG2319         145 GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTD--PVSSLAFSP--DGGLLIASGSSD  220 (466)
T ss_pred             CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCC--ceEEEEEcC--CcceEEEEecCC
Confidence            3667788899999999999999998988886 99999999998888888888874  499999998  877 55566999


Q ss_pred             CeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEE
Q 021291           86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA  165 (314)
Q Consensus        86 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (314)
                      +.|++||...+.....   .+..+.....                                       ..|++++. +++
T Consensus       221 ~~i~~wd~~~~~~~~~---~~~~~~~~~~---------------------------------------~~~~~~~~-~~~  257 (466)
T COG2319         221 GTIRLWDLSTGKLLRS---TLSGHSDSVV---------------------------------------SSFSPDGS-LLA  257 (466)
T ss_pred             CcEEEEECCCCcEEee---ecCCCCccee---------------------------------------EeECCCCC-EEE
Confidence            9999998875443210   0111111000                                       13778874 343


Q ss_pred             EeecCcCeEEEEecCCCce-eeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCc
Q 021291          166 VAGEQLSEVEIWDLNTAER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (314)
Q Consensus       166 ~~g~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~  244 (314)
                       +++.|+.+++||.+.... ...+.        +|    ...+.++. |.|+   +. .+++++.|+.+.+||... ...
T Consensus       258 -~~~~d~~~~~~~~~~~~~~~~~~~--------~~----~~~v~~~~-~~~~---~~-~~~~~~~d~~~~~~~~~~-~~~  318 (466)
T COG2319         258 -SGSSDGTIRLWDLRSSSSLLRTLS--------GH----SSSVLSVA-FSPD---GK-LLASGSSDGTVRLWDLET-GKL  318 (466)
T ss_pred             -EecCCCcEEEeeecCCCcEEEEEe--------cC----CccEEEEE-ECCC---CC-EEEEeeCCCcEEEEEcCC-Cce
Confidence             677799999999987665 33332        45    44666666 9995   44 566688888899999887 554


Q ss_pred             eEeee--cCCcceEEEEEeCCCCeEEEe-cCCCcEEEEecCCCe
Q 021291          245 LTAMK--VHLEPVLCLSIDESCNGGISG-GADQKIVLYNLDHST  285 (314)
Q Consensus       245 ~~~~~--~h~~~v~~~~~~~~~~~l~s~-s~dg~i~iw~~~~~~  285 (314)
                      .....  .|...+..+.|.+++..++.+ ..|+.+.+|++....
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  362 (466)
T COG2319         319 LSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK  362 (466)
T ss_pred             EEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence            44444  788889999993332455555 688999999998887

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.69  E-value=1.1e-15  Score=119.52  Aligned_cols=180  Identities=18%  Similarity=0.205  Sum_probs=133.3

Q ss_pred             CCCceeEEEEccCCC-EEEEecCCCeEEEEeCCCC---------eEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC
Q 021291           17 HRASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQH---------RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (314)
Q Consensus        17 h~~~v~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg   86 (314)
                      ...+|..+.|.++.. .||||+.|..|+||.++.+         +.+..+..|..+  |.++.|+|  +|+.|++|+.+|
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~a--VN~vRf~p--~gelLASg~D~g   87 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRA--VNVVRFSP--DGELLASGGDGG   87 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcce--eEEEEEcC--CcCeeeecCCCc
Confidence            346899999998654 9999999999999988653         234556677755  99999999  999999999999


Q ss_pred             eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEE
Q 021291           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV  166 (314)
Q Consensus        87 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (314)
                      .|.+|-...-..     .                                                     +. +.-   
T Consensus        88 ~v~lWk~~~~~~-----~-----------------------------------------------------~~-d~e---  105 (434)
T KOG1009|consen   88 EVFLWKQGDVRI-----F-----------------------------------------------------DA-DTE---  105 (434)
T ss_pred             eEEEEEecCcCC-----c-----------------------------------------------------cc-cch---
Confidence            999998765110     0                                                     00 000   


Q ss_pred             eecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceE
Q 021291          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (314)
Q Consensus       167 ~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~  246 (314)
                       ...+.       +.......+.        +|.    .-++.++ |+|+   +. ++++++.|..+++||+.. ++.+.
T Consensus       106 -~~~~k-------e~w~v~k~lr--------~h~----~diydL~-Ws~d---~~-~l~s~s~dns~~l~Dv~~-G~l~~  159 (434)
T KOG1009|consen  106 -ADLNK-------EKWVVKKVLR--------GHR----DDIYDLA-WSPD---SN-FLVSGSVDNSVRLWDVHA-GQLLA  159 (434)
T ss_pred             -hhhCc-------cceEEEEEec--------ccc----cchhhhh-ccCC---Cc-eeeeeeccceEEEEEecc-ceeEe
Confidence             00000       0011111222        342    2455665 9998   44 999999999999999998 99999


Q ss_pred             eeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeE
Q 021291          247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVL  288 (314)
Q Consensus       247 ~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~  288 (314)
                      .+..|...|..++|+|-.+++++-|.|...+.+.+...+.+.
T Consensus       160 ~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~  201 (434)
T KOG1009|consen  160 ILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIK  201 (434)
T ss_pred             eccccccccceeecchhhhhhhhhccCcccceeeeeeeeeee
Confidence            999999999999999999999999999988887776554443

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.68  E-value=1.5e-16  Score=126.26  Aligned_cols=199  Identities=16%  Similarity=0.188  Sum_probs=153.0

Q ss_pred             eeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCC
Q 021291           21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSS  100 (314)
Q Consensus        21 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~  100 (314)
                      -..+.|+.+|++|+.|+.-|-|..+|..+++....+...   ..|.++.|..  +.++|+. .....+.|||-..-++  
T Consensus       132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~---Etv~Dv~~LH--neq~~AV-AQK~y~yvYD~~GtEl--  203 (545)
T KOG1272|consen  132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM---ETVRDVTFLH--NEQFFAV-AQKKYVYVYDNNGTEL--  203 (545)
T ss_pred             CeeeeecCCccEEEecCCccceeeeecccceeeeeeehh---hhhhhhhhhc--chHHHHh-hhhceEEEecCCCcEE--
Confidence            456888999999999999999999999999988887655   4499999998  6455555 4567899999765432  


Q ss_pred             CCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecC
Q 021291          101 NPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLN  180 (314)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~  180 (314)
                         ..++.....   ..                                    +.|.|.. + |+++++..|.++.-|+.
T Consensus       204 ---HClk~~~~v---~r------------------------------------LeFLPyH-f-LL~~~~~~G~L~Y~DVS  239 (545)
T KOG1272|consen  204 ---HCLKRHIRV---AR------------------------------------LEFLPYH-F-LLVAASEAGFLKYQDVS  239 (545)
T ss_pred             ---eehhhcCch---hh------------------------------------hcccchh-h-eeeecccCCceEEEeec
Confidence               111111110   00                                    3455653 4 44467778999999999


Q ss_pred             CCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEE
Q 021291          181 TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSI  260 (314)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~  260 (314)
                      +|+.+..+..            ..+....+. -+|-+.    .+-.|..+|+|.+|.... ..++..+..|.++|.+|++
T Consensus       240 ~GklVa~~~t------------~~G~~~vm~-qNP~Na----Vih~GhsnGtVSlWSP~s-kePLvKiLcH~g~V~siAv  301 (545)
T KOG1272|consen  240 TGKLVASIRT------------GAGRTDVMK-QNPYNA----VIHLGHSNGTVSLWSPNS-KEPLVKILCHRGPVSSIAV  301 (545)
T ss_pred             hhhhhHHHHc------------cCCccchhh-cCCccc----eEEEcCCCceEEecCCCC-cchHHHHHhcCCCcceEEE
Confidence            9999888763            133344444 667532    889999999999999998 8888888899999999999


Q ss_pred             eCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291          261 DESCNGGISGGADQKIVLYNLDHSTYVLF  289 (314)
Q Consensus       261 ~~~~~~l~s~s~dg~i~iw~~~~~~~~~~  289 (314)
                      +++|+|++|.+.|..++|||++.-.++..
T Consensus       302 ~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t  330 (545)
T KOG1272|consen  302 DRGGRYMATTGLDRKVKIWDLRNFYQLHT  330 (545)
T ss_pred             CCCCcEEeecccccceeEeeeccccccce
Confidence            99999999999999999999998776543

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.68  E-value=2.8e-15  Score=121.33  Aligned_cols=224  Identities=17%  Similarity=0.191  Sum_probs=144.7

Q ss_pred             CCCEEEEecCCCeEEEEeCCCCeEEEEE--eccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeee
Q 021291           29 TKPILFAGTTGGELRIWDTVQHRTVSSS--WVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTI  106 (314)
Q Consensus        29 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~  106 (314)
                      ++--|+.|-.-|.|.+.|....+..+.+  ..+.....|+|+.|-|. +...|+.+-.+|.+.+||.+-..-...|.+..
T Consensus       184 ~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg-~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~  262 (636)
T KOG2394|consen  184 KGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPG-SDSLFLVAHASGNLYLYDKEIVCGATAPSYQA  262 (636)
T ss_pred             CCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeC-CCceEEEEEecCceEEeeccccccCCCCcccc
Confidence            4556777777888888886552211111  11222256999999995 33677778889999999874322112222222


Q ss_pred             ecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceee
Q 021291          107 KTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCT  186 (314)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~  186 (314)
                      ...............      ....-...|.+...        .-...+|+|||+++.  +-+.||.++|||..+.+++.
T Consensus       263 ~k~~~~f~i~t~ksk------~~rNPv~~w~~~~g--------~in~f~FS~DG~~LA--~VSqDGfLRvF~fdt~eLlg  326 (636)
T KOG2394|consen  263 LKDGDQFAILTSKSK------KTRNPVARWHIGEG--------SINEFAFSPDGKYLA--TVSQDGFLRIFDFDTQELLG  326 (636)
T ss_pred             cCCCCeeEEeeeecc------ccCCccceeEeccc--------cccceeEcCCCceEE--EEecCceEEEeeccHHHHHH
Confidence            221111111100000      00001111111111        111178999998765  44569999999999988877


Q ss_pred             eecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeC----
Q 021291          187 RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDE----  262 (314)
Q Consensus       187 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~----  262 (314)
                      .++.            .-+...|++ |+||   |+ +|++|++|..|.||.+.. .+.+..-++|.++|..|+|+|    
T Consensus       327 ~mkS------------YFGGLLCvc-WSPD---GK-yIvtGGEDDLVtVwSf~e-rRVVARGqGHkSWVs~VaFDpytt~  388 (636)
T KOG2394|consen  327 VMKS------------YFGGLLCVC-WSPD---GK-YIVTGGEDDLVTVWSFEE-RRVVARGQGHKSWVSVVAFDPYTTS  388 (636)
T ss_pred             HHHh------------hccceEEEE-EcCC---cc-EEEecCCcceEEEEEecc-ceEEEeccccccceeeEeecccccc
Confidence            6662            345678887 9999   66 999999999999999998 889999999999999999982    


Q ss_pred             --------------------------------------------CCCeEEEecCCCcEEEEecCCCeee
Q 021291          263 --------------------------------------------SCNGGISGGADQKIVLYNLDHSTYV  287 (314)
Q Consensus       263 --------------------------------------------~~~~l~s~s~dg~i~iw~~~~~~~~  287 (314)
                                                                  ....|.+.+.|-.+.+||+......
T Consensus       389 ~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~  457 (636)
T KOG2394|consen  389 TEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLV  457 (636)
T ss_pred             cccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhcc
Confidence                                                        1124778889999999999865443

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.66  E-value=1.3e-13  Score=113.28  Aligned_cols=276  Identities=13%  Similarity=0.103  Sum_probs=156.2

Q ss_pred             CCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEee-cCC
Q 021291            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG-RDG   86 (314)
Q Consensus         8 ~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg   86 (314)
                      .+.+.++......-..+.|+|||+++++++.||.|.++|+.+++.+.+++...   ...++++++  ||++++++. .++
T Consensus        26 ~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~---~~~~i~~s~--DG~~~~v~n~~~~  100 (369)
T PF02239_consen   26 NKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG---NPRGIAVSP--DGKYVYVANYEPG  100 (369)
T ss_dssp             -SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS---EEEEEEE----TTTEEEEEEEETT
T ss_pred             CeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC---CcceEEEcC--CCCEEEEEecCCC
Confidence            46677777554444457899999999999999999999999999999987654   357899999  999988765 589


Q ss_pred             eEEEEeCCCCCCCCCCeeeeeccee-------eEEEe-eeeecc-ccccccCCCCcceeeccCCceeee-cCCCCCC---
Q 021291           87 TVKCWDIENGGLSSNPSLTIKTNSY-------HFCKL-SLVKEP-YANAKQANEPKDCYEREVGETVDT-DSLCDSK---  153 (314)
Q Consensus        87 ~v~iwd~~~~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---  153 (314)
                      .+.++|.++.+.++    .+.....       ....+ .....+ ..............+......+.. .......   
T Consensus       101 ~v~v~D~~tle~v~----~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D  176 (369)
T PF02239_consen  101 TVSVIDAETLEPVK----TIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHD  176 (369)
T ss_dssp             EEEEEETTT--EEE----EEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEE
T ss_pred             ceeEecccccccee----ecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccc
Confidence            99999999986544    3322211       11111 111122 112222233333344443332221 1111111   


Q ss_pred             ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccC----------------CCCC-----------------cC
Q 021291          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCG----------------GSPN-----------------FS  200 (314)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~----------------~~~~-----------------h~  200 (314)
                      ..|+|++++++++ ...++.|.++|.++++....+......                ....                 |.
T Consensus       177 ~~~dpdgry~~va-~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d  255 (369)
T PF02239_consen  177 GGFDPDGRYFLVA-ANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHD  255 (369)
T ss_dssp             EEE-TTSSEEEEE-EGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-ST
T ss_pred             cccCcccceeeec-ccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccch
Confidence            8899999988764 334578999999887765543210000                0000                 10


Q ss_pred             CCC---------CceeeeEEEecCCCCCCceEEEEe----ecCCcEEEEEccCCCCceEeeecC-CcceEEEEEeCCCCe
Q 021291          201 SKG---------RGMCMAVQAYLPSKSQGFVNVLAG----YEDGSILVWDIRNPGIPLTAMKVH-LEPVLCLSIDESCNG  266 (314)
Q Consensus       201 ~~~---------~~~~~~~~~~~p~~~~g~~~l~~g----~~dg~i~vwd~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~  266 (314)
                      ...         .+...-+. -+|+   ++ ++.+.    ..++.|.++|.++ .+.+..+... ...+..+.|+++|+.
T Consensus       256 ~~~wkvv~~I~~~G~glFi~-thP~---s~-~vwvd~~~~~~~~~v~viD~~t-l~~~~~i~~~~~~~~~h~ef~~dG~~  329 (369)
T PF02239_consen  256 DYAWKVVKTIPTQGGGLFIK-THPD---SR-YVWVDTFLNPDADTVQVIDKKT-LKVVKTITPGPGKRVVHMEFNPDGKE  329 (369)
T ss_dssp             TTBTSEEEEEE-SSSS--EE---TT----S-EEEEE-TT-SSHT-EEEEECCG-TEEEE-HHHHHT--EEEEEE-TTSSE
T ss_pred             hhcCeEEEEEECCCCcceee-cCCC---Cc-cEEeeccCCCCCceEEEEECcC-cceeEEEeccCCCcEeccEECCCCCE
Confidence            000         01112333 5666   44 66665    5568999999998 5555665432 235899999999997


Q ss_pred             EEEecCC--CcEEEEecCCCeeeEeeeeeeecCCCce
Q 021291          267 GISGGAD--QKIVLYNLDHSTYVLFGIGFVCDQEGNK  301 (314)
Q Consensus       267 l~s~s~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~~  301 (314)
                      +..+..+  +.|.+||..+.+.+..+.  ...|.|..
T Consensus       330 v~vS~~~~~~~i~v~D~~Tl~~~~~i~--~~tP~G~f  364 (369)
T PF02239_consen  330 VWVSVWDGNGAIVVYDAKTLKEKKRIP--VPTPTGKF  364 (369)
T ss_dssp             EEEEEE--TTEEEEEETTTTEEEEEEE----SEEEEE
T ss_pred             EEEEEecCCCEEEEEECCCcEEEEEEE--eeCCCeEe
Confidence            7544443  379999999999998877  44465543

...

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.66  E-value=3.7e-14  Score=106.20  Aligned_cols=112  Identities=11%  Similarity=0.241  Sum_probs=85.9

Q ss_pred             ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeec---C
Q 021291          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE---D  230 (314)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~---d  230 (314)
                      ++|+|+|+.++++.|..++.|.+||++ ++.+..+.              ......+. |+|+   |+ ++++++.   .
T Consensus        65 ~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--------------~~~~n~i~-wsP~---G~-~l~~~g~~n~~  124 (194)
T PF08662_consen   65 VAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--------------TQPRNTIS-WSPD---GR-FLVLAGFGNLN  124 (194)
T ss_pred             EEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--------------CCCceEEE-ECCC---CC-EEEEEEccCCC
Confidence            679999999888788778899999997 66666665              22445676 9998   66 6666543   4


Q ss_pred             CcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecC------CCcEEEEecCCCeeeEe
Q 021291          231 GSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA------DQKIVLYNLDHSTYVLF  289 (314)
Q Consensus       231 g~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~------dg~i~iw~~~~~~~~~~  289 (314)
                      |.|.+||.++ .+.+.... | ..++.++|+|+|++|+++..      |+.++||++. |+.+..
T Consensus       125 G~l~~wd~~~-~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~  185 (194)
T PF08662_consen  125 GDLEFWDVRK-KKKISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYK  185 (194)
T ss_pred             cEEEEEECCC-CEEeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEe
Confidence            6799999997 66666654 3 35789999999999998874      7889999985 555543

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.65  E-value=1.9e-13  Score=112.24  Aligned_cols=252  Identities=10%  Similarity=0.096  Sum_probs=142.8

Q ss_pred             EEEecCCCeEEEEeCCC-Ce--EEEEEeccCCcccEEEEEEcccCCCCeEEEee-cCCeEEEEeCCC-CCCCCCCeeeee
Q 021291           33 LFAGTTGGELRIWDTVQ-HR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQG-RDGTVKCWDIEN-GGLSSNPSLTIK  107 (314)
Q Consensus        33 l~s~~~dg~v~iwd~~~-~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~v~iwd~~~-~~~~~~~~~~~~  107 (314)
                      +++...|+.|.+||+.+ ++  .+..+...   .....++++|  ++++|++++ .++.|.+|++.. +.+..  .....
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~---~~~~~l~~sp--d~~~lyv~~~~~~~i~~~~~~~~g~l~~--~~~~~   77 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVDVP---GQVQPMVISP--DKRHLYVGVRPEFRVLSYRIADDGALTF--AAESP   77 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEecC---CCCccEEECC--CCCEEEEEECCCCcEEEEEECCCCceEE--eeeec
Confidence            34447789999999964 33  44555432   3367899999  989887664 578999999973 32211  11111


Q ss_pred             c-ceeeEEEeeeeeccccccccCCCCcceeeccCCce---eeecCCCCC--C-ceeccCCCceEEEeecCcCeEEEEecC
Q 021291          108 T-NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGET---VDTDSLCDS--K-DDVPAEGPKYMAVAGEQLSEVEIWDLN  180 (314)
Q Consensus       108 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~-~~~~~~~~~~~~~~g~~d~~i~vwd~~  180 (314)
                      . .......+++............+...++++.....   ......+..  . ++++|+++.+++ +...++.|.+||+.
T Consensus        78 ~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v-~~~~~~~v~v~d~~  156 (330)
T PRK11028         78 LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWV-PCLKEDRIRLFTLS  156 (330)
T ss_pred             CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEE-eeCCCCEEEEEEEC
Confidence            1 11223333433333333333345556666653221   111122211  2 789999987765 55667999999997


Q ss_pred             CCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeec-CCcEEEEEccCC-C--CceEeeecC-----
Q 021291          181 TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE-DGSILVWDIRNP-G--IPLTAMKVH-----  251 (314)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~-dg~i~vwd~~~~-~--~~~~~~~~h-----  251 (314)
                      +...+......      ....+.......+. |+|+   |+ +++++.. ++.|.+||++.. +  +.+..+..+     
T Consensus       157 ~~g~l~~~~~~------~~~~~~g~~p~~~~-~~pd---g~-~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~  225 (330)
T PRK11028        157 DDGHLVAQEPA------EVTTVEGAGPRHMV-FHPN---QQ-YAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFS  225 (330)
T ss_pred             CCCcccccCCC------ceecCCCCCCceEE-ECCC---CC-EEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCC
Confidence            63322110000      00000111234555 9998   65 6655554 899999999741 2  223333322     


Q ss_pred             -CcceEEEEEeCCCCeEEEec-CCCcEEEEecCCCeeeE----e------eeeeeecCCCceec
Q 021291          252 -LEPVLCLSIDESCNGGISGG-ADQKIVLYNLDHSTYVL----F------GIGFVCDQEGNKFG  303 (314)
Q Consensus       252 -~~~v~~~~~~~~~~~l~s~s-~dg~i~iw~~~~~~~~~----~------~~~~~~~~~~~~~~  303 (314)
                       ......+.++|++++|+++. .++.|.+|+++......    .      ..++.++++|+.+.
T Consensus       226 ~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~  289 (330)
T PRK11028        226 DTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLI  289 (330)
T ss_pred             CCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEE
Confidence             11234688999999988875 47899999996543211    1      13566777776554

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=4.5e-15  Score=118.73  Aligned_cols=268  Identities=16%  Similarity=0.172  Sum_probs=159.5

Q ss_pred             ceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEe-ccC----------------------------
Q 021291           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW-VHS----------------------------   60 (314)
Q Consensus        10 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~----------------------------   60 (314)
                      ....|.+|.+.|..+.|+..|..|++|+.|..|.+||...++....+. +|.                            
T Consensus       134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~  213 (559)
T KOG1334|consen  134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV  213 (559)
T ss_pred             hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence            456788999999999999999999999999999999987655433332 121                            


Q ss_pred             -----------------CcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccc
Q 021291           61 -----------------AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY  123 (314)
Q Consensus        61 -----------------~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (314)
                                       +.++|.-++.-|. ....|.+++.|+.+.-.|++...........-.........+++...+.
T Consensus       214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~-sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~  292 (559)
T KOG1334|consen  214 SEILETGYVENTKRLAPHEGPVHKLAVEPD-SPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR  292 (559)
T ss_pred             eeeccccceecceecccccCccceeeecCC-CCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence                             1123555555552 2245667777777777777655332211100001110111122222222


Q ss_pred             cc-cccCCCCc---ceeeccCCc------eeeecCCCCCC---------ceeccCCCceEEEeecCcCeEEEEecCCCce
Q 021291          124 AN-AKQANEPK---DCYEREVGE------TVDTDSLCDSK---------DDVPAEGPKYMAVAGEQLSEVEIWDLNTAER  184 (314)
Q Consensus       124 ~~-~~~~~~~~---~~~~~~~~~------~~~~~~~~~~~---------~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~  184 (314)
                      .. ..+.++..   .+++.+...      .+....+.|..         ++++.++..+++  +..|-.|+++....+.-
T Consensus       293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLa--SYnDe~IYLF~~~~~~G  370 (559)
T KOG1334|consen  293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLA--SYNDEDIYLFNKSMGDG  370 (559)
T ss_pred             CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceee--eecccceEEeccccccC
Confidence            21 22233322   233332211      11111121111         888888887775  44467899995432221


Q ss_pred             --eeeec---ccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEE
Q 021291          185 --CTRLH---QNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLS  259 (314)
Q Consensus       185 --~~~~~---~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~  259 (314)
                        .....   .-......||....+  +-.+.-|-|.   .+ ++++|+.-|.|.||+-.+ ++.+..+.+-..-|+||.
T Consensus       371 ~~p~~~s~~~~~~k~vYKGHrN~~T--VKgVNFfGPr---sE-yVvSGSDCGhIFiW~K~t-~eii~~MegDr~VVNCLE  443 (559)
T KOG1334|consen  371 SEPDPSSPREQYVKRVYKGHRNSRT--VKGVNFFGPR---SE-YVVSGSDCGHIFIWDKKT-GEIIRFMEGDRHVVNCLE  443 (559)
T ss_pred             CCCCCCcchhhccchhhcccccccc--cceeeeccCc---cc-eEEecCccceEEEEecch-hHHHHHhhcccceEeccC
Confidence              00000   000001227765433  4455436665   33 999999999999999988 888888888777999999


Q ss_pred             EeCCCCeEEEecCCCcEEEEecCCCeee
Q 021291          260 IDESCNGGISGGADQKIVLYNLDHSTYV  287 (314)
Q Consensus       260 ~~~~~~~l~s~s~dg~i~iw~~~~~~~~  287 (314)
                      -+|--..||+++-|.-|+||-..+.+..
T Consensus       444 pHP~~PvLAsSGid~DVKIWTP~~~er~  471 (559)
T KOG1334|consen  444 PHPHLPVLASSGIDHDVKIWTPLTAERA  471 (559)
T ss_pred             CCCCCchhhccCCccceeeecCCccccc
Confidence            9999999999999999999988555443

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.65  E-value=6.7e-15  Score=119.24  Aligned_cols=182  Identities=17%  Similarity=0.258  Sum_probs=139.1

Q ss_pred             CEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecce
Q 021291           31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNS  110 (314)
Q Consensus        31 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~  110 (314)
                      ..|+.++.||.+.|.+ +.++....+..|.++  |.+-.|+|  +|.-|+++++||.|++|.-... +..  .+. +...
T Consensus        76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A--~~~gRW~~--dGtgLlt~GEDG~iKiWSrsGM-LRS--tl~-Q~~~  146 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILN-KSARVERSISAHAAA--ISSGRWSP--DGAGLLTAGEDGVIKIWSRSGM-LRS--TVV-QNEE  146 (737)
T ss_pred             ceEEEEcCCceEEEec-ccchhhhhhhhhhhh--hhhcccCC--CCceeeeecCCceEEEEeccch-HHH--HHh-hcCc
Confidence            4688899999999998 667888888889855  99999999  9999999999999999985432 211  111 1111


Q ss_pred             eeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceeeeecc
Q 021291          111 YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQ  190 (314)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~  190 (314)
                      ...|                                       ++|.|+.+.++.+.|   +.+.+=.+.....+...+ 
T Consensus       147 ~v~c---------------------------------------~~W~p~S~~vl~c~g---~h~~IKpL~~n~k~i~Wk-  183 (737)
T KOG1524|consen  147 SIRC---------------------------------------ARWAPNSNSIVFCQG---GHISIKPLAANSKIIRWR-  183 (737)
T ss_pred             eeEE---------------------------------------EEECCCCCceEEecC---CeEEEeecccccceeEEe-
Confidence            1122                                       568899888876433   568888877777777777 


Q ss_pred             cccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEe
Q 021291          191 NSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISG  270 (314)
Q Consensus       191 ~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~  270 (314)
                             +|    .+.+.++. |+|...    ++++|++|-..+|||..  ++++..-..|.-+|++++|.|+ ..++.+
T Consensus       184 -------AH----DGiiL~~~-W~~~s~----lI~sgGED~kfKvWD~~--G~~Lf~S~~~ey~ITSva~npd-~~~~v~  244 (737)
T KOG1524|consen  184 -------AH----DGLVLSLS-WSTQSN----IIASGGEDFRFKIWDAQ--GANLFTSAAEEYAITSVAFNPE-KDYLLW  244 (737)
T ss_pred             -------cc----CcEEEEee-cCcccc----ceeecCCceeEEeeccc--CcccccCChhccceeeeeeccc-cceeee
Confidence                   67    67999998 999733    99999999999999987  7888888899999999999999 556666


Q ss_pred             cCCCcEEEEecCCC
Q 021291          271 GADQKIVLYNLDHS  284 (314)
Q Consensus       271 s~dg~i~iw~~~~~  284 (314)
                      |.. ++|+=..+.|
T Consensus       245 S~n-t~R~~~p~~G  257 (737)
T KOG1524|consen  245 SYN-TARFSSPRVG  257 (737)
T ss_pred             eee-eeeecCCCcc
Confidence            654 5664444444

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.63  E-value=7.3e-14  Score=108.96  Aligned_cols=247  Identities=13%  Similarity=0.152  Sum_probs=161.9

Q ss_pred             CCCceeEEEEccCC--CEEEEecCCCeEEEEeCCCCeEEEEE----eccCCcccEEEEEEcccCCCCeEEEeecCCeEEE
Q 021291           17 HRASVTDVCFHQTK--PILFAGTTGGELRIWDTVQHRTVSSS----WVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC   90 (314)
Q Consensus        17 h~~~v~~~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~i   90 (314)
                      -...|..++|.-++  ..|...+.|..+..+.+....+...+    ..+-...+|..++...    ..|++|-.+|.+.+
T Consensus        54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~d----g~Litc~~sG~l~~  129 (412)
T KOG3881|consen   54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLAD----GTLITCVSSGNLQV  129 (412)
T ss_pred             hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcC----CEEEEEecCCcEEE
Confidence            34567888888654  35565657777888887776655443    2233335588887765    68899999999999


Q ss_pred             EeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCC-----CCcceeeccCCceeeecCCCCCC------------
Q 021291           91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN-----EPKDCYEREVGETVDTDSLCDSK------------  153 (314)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~------------  153 (314)
                      |....+..-..+...+...+.....-.....+.  ..+.|     ....+|++.....+........+            
T Consensus       130 ~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~--Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~td  207 (412)
T KOG3881|consen  130 RHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPY--IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITD  207 (412)
T ss_pred             EeccCCccccccceeeecCCceeeeccCCCCCc--eEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecc
Confidence            999966543334444444433222111111111  12222     23456666555322221111111            


Q ss_pred             ceeccCC-CceEEEeecCcCeEEEEecCCCc-eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCC
Q 021291          154 DDVPAEG-PKYMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG  231 (314)
Q Consensus       154 ~~~~~~~-~~~~~~~g~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg  231 (314)
                      +.|-+.. .+.++ +++.-+.|++||++.++ ++..|..            ....++++. ..|.   |. ++++|..-|
T Consensus       208 i~Fl~g~~~~~fa-t~T~~hqvR~YDt~~qRRPV~~fd~------------~E~~is~~~-l~p~---gn-~Iy~gn~~g  269 (412)
T KOG3881|consen  208 IRFLEGSPNYKFA-TITRYHQVRLYDTRHQRRPVAQFDF------------LENPISSTG-LTPS---GN-FIYTGNTKG  269 (412)
T ss_pred             ceecCCCCCceEE-EEecceeEEEecCcccCcceeEecc------------ccCcceeee-ecCC---Cc-EEEEecccc
Confidence            5565552 22333 55556999999999765 4555552            234666666 7777   55 899999999


Q ss_pred             cEEEEEccCCCCce-EeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeE
Q 021291          232 SILVWDIRNPGIPL-TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVL  288 (314)
Q Consensus       232 ~i~vwd~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~  288 (314)
                      .+..||++. +... ..+++..+.|.++..+|.+++|+++|-|..|||+|+++.+.+.
T Consensus       270 ~l~~FD~r~-~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~  326 (412)
T KOG3881|consen  270 QLAKFDLRG-GKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLH  326 (412)
T ss_pred             hhheecccC-ceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhh
Confidence            999999998 5554 4488999999999999999999999999999999999976654

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.63  E-value=3.6e-13  Score=102.50  Aligned_cols=179  Identities=15%  Similarity=0.281  Sum_probs=130.3

Q ss_pred             CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCC-CCCCCCeeeeecceeeEEEeee
Q 021291           40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG-GLSSNPSLTIKTNSYHFCKLSL  118 (314)
Q Consensus        40 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~  118 (314)
                      ..|.|||=...+++.++.-.   .+|.++.+.+    +.++..- ++.|.||...+. +...  .+....++...|.+.+
T Consensus        75 NkviIWDD~k~~~i~el~f~---~~I~~V~l~r----~riVvvl-~~~I~VytF~~n~k~l~--~~et~~NPkGlC~~~~  144 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELSFN---SEIKAVKLRR----DRIVVVL-ENKIYVYTFPDNPKLLH--VIETRSNPKGLCSLCP  144 (346)
T ss_pred             ceEEEEecccCcEEEEEEec---cceeeEEEcC----CeEEEEe-cCeEEEEEcCCChhhee--eeecccCCCceEeecC
Confidence            47999996667777777654   4599999988    5666655 468999998743 3322  3333333444443332


Q ss_pred             eeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCce--eeeecccccCCC
Q 021291          119 VKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAER--CTRLHQNSCGGS  196 (314)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~--~~~~~~~~~~~~  196 (314)
                      .                                       .+..+++.-|-.-|.|.|-|+...+.  ...+.       
T Consensus       145 ~---------------------------------------~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~-------  178 (346)
T KOG2111|consen  145 T---------------------------------------SNKSLLAFPGFKTGQVQIVDLASTKPNAPSIIN-------  178 (346)
T ss_pred             C---------------------------------------CCceEEEcCCCccceEEEEEhhhcCcCCceEEE-------
Confidence            2                                       12445666677779999999986554  34444       


Q ss_pred             CCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCc-EEEEEccCCCCceEeeecC--CcceEEEEEeCCCCeEEEecCC
Q 021291          197 PNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS-ILVWDIRNPGIPLTAMKVH--LEPVLCLSIDESCNGGISGGAD  273 (314)
Q Consensus       197 ~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~-i~vwd~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~s~s~d  273 (314)
                       +|    .+.+.+++ .+-+   |. .+|+++..|+ |||||..+ +.+++++.--  ...|.+|+|+|+..+|+.+|..
T Consensus       179 -AH----~s~Iacv~-Ln~~---Gt-~vATaStkGTLIRIFdt~~-g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdK  247 (346)
T KOG2111|consen  179 -AH----DSDIACVA-LNLQ---GT-LVATASTKGTLIRIFDTED-GTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDK  247 (346)
T ss_pred             -cc----cCceeEEE-EcCC---cc-EEEEeccCcEEEEEEEcCC-CcEeeeeecCCchheEEEEEeCCCccEEEEEcCC
Confidence             67    44667776 7766   55 9999999998 89999999 8888888732  4579999999999999999999


Q ss_pred             CcEEEEecCCCe
Q 021291          274 QKIVLYNLDHST  285 (314)
Q Consensus       274 g~i~iw~~~~~~  285 (314)
                      |+++|+.++...
T Consensus       248 gTlHiF~l~~~~  259 (346)
T KOG2111|consen  248 GTLHIFSLRDTE  259 (346)
T ss_pred             CeEEEEEeecCC
Confidence            999999987643

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=1.8e-13  Score=116.88  Aligned_cols=255  Identities=17%  Similarity=0.229  Sum_probs=147.9

Q ss_pred             CCCCceeEEEEccCCCEEEEecCCCeEEEEeCCC--C--eEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEE
Q 021291           16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ--H--RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW   91 (314)
Q Consensus        16 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~--~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iw   91 (314)
                      .|.-.++|.+++|+++++|+|..||.|.+|.--.  +  .....+.-|.  +.|.+++|++  +|.+|++|+.+|.+.+|
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~--~~V~~L~fS~--~G~~LlSGG~E~VLv~W  278 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHH--DEVNSLSFSS--DGAYLLSGGREGVLVLW  278 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecc--cccceeEEec--CCceEeecccceEEEEE
Confidence            4777799999999999999999999999997332  1  2234454565  4599999999  99999999999999999


Q ss_pred             eCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccC---CceeeecCCC-------CCC----ceec
Q 021291           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREV---GETVDTDSLC-------DSK----DDVP  157 (314)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-------~~~----~~~~  157 (314)
                      .+++++..   .+.--..+...+.++++......... +....++....   ...+......       .+.    ++++
T Consensus       279 q~~T~~kq---fLPRLgs~I~~i~vS~ds~~~sl~~~-DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~id  354 (792)
T KOG1963|consen  279 QLETGKKQ---FLPRLGSPILHIVVSPDSDLYSLVLE-DNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSID  354 (792)
T ss_pred             eecCCCcc---cccccCCeeEEEEEcCCCCeEEEEec-CceEEEEeccchhhhhhccCccCCCccccccccccceeEEEc
Confidence            99998721   22222334444444433322222222 22222221111   1111111111       111    6666


Q ss_pred             cCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCC-------------------------------CCc-------
Q 021291          158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGS-------------------------------PNF-------  199 (314)
Q Consensus       158 ~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~-------------------------------~~h-------  199 (314)
                      |--+.++ ..| ..+.|.+||+.+.+.+..+.....-..                               ..+       
T Consensus       355 pr~~~~v-ln~-~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~L  432 (792)
T KOG1963|consen  355 PRTNSLV-LNG-HPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSL  432 (792)
T ss_pred             CCCCcee-ecC-CCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEE
Confidence            6322222 233 357788887765544333321000000                               000       


Q ss_pred             ------------------CCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCC---------CCceEeeecCC
Q 021291          200 ------------------SSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP---------GIPLTAMKVHL  252 (314)
Q Consensus       200 ------------------~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~---------~~~~~~~~~h~  252 (314)
                                        ..++.....+.+..+|..+ .  .+++++.||.+++|-+...         ..+...-.-|.
T Consensus       433 KFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs-~--~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k  509 (792)
T KOG1963|consen  433 KFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRS-V--RCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHK  509 (792)
T ss_pred             EEEEEcCCcceeEEEEEEecCCCceeEEEEEecCccc-c--eeEEeccCCeEEEEEEecccccCcCccceEEeeeecccc
Confidence                              0111112222221233222 1  6889999999999988321         11222223478


Q ss_pred             cceEEEEEeCCCCeEEEecCCCcEEEEecCCC
Q 021291          253 EPVLCLSIDESCNGGISGGADQKIVLYNLDHS  284 (314)
Q Consensus       253 ~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~  284 (314)
                      .+++.++|+.||. +++.|.|++|.+||..+.
T Consensus       510 ~~i~a~~fs~dGs-lla~s~~~~Itiwd~~~~  540 (792)
T KOG1963|consen  510 TPITALCFSQDGS-LLAVSFDDTITIWDYDTK  540 (792)
T ss_pred             CcccchhhcCCCc-EEEEecCCEEEEecCCCh
Confidence            8999999999996 566778999999999984

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.63  E-value=9.7e-15  Score=120.71  Aligned_cols=200  Identities=19%  Similarity=0.257  Sum_probs=139.2

Q ss_pred             EccCCCEEEE--ecCCCeEEEEeCCCC-eEEE-EEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCC
Q 021291           26 FHQTKPILFA--GTTGGELRIWDTVQH-RTVS-SSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSN  101 (314)
Q Consensus        26 ~~~~~~~l~s--~~~dg~v~iwd~~~~-~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  101 (314)
                      |+.+..++|.  .+.-|.|-||++... +..- .+.+-.....|+.+.|.|. |...|+.+++||.|++|.+..+.+...
T Consensus       587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPF-D~~rLAVa~ddg~i~lWr~~a~gl~e~  665 (1012)
T KOG1445|consen  587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPF-DDERLAVATDDGQINLWRLTANGLPEN  665 (1012)
T ss_pred             eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCC-ChHHeeecccCceEEEEEeccCCCCcc
Confidence            3334445553  456789999998753 3211 1111111145999999998 669999999999999999987654321


Q ss_pred             ---C--eeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEE
Q 021291          102 ---P--SLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI  176 (314)
Q Consensus       102 ---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v  176 (314)
                         |  +++.+...+..                                        +.|+|-...+++ +++.|-+|++
T Consensus       666 ~~tPe~~lt~h~eKI~s----------------------------------------lRfHPLAadvLa-~asyd~Ti~l  704 (1012)
T KOG1445|consen  666 EMTPEKILTIHGEKITS----------------------------------------LRFHPLAADVLA-VASYDSTIEL  704 (1012)
T ss_pred             cCCcceeeecccceEEE----------------------------------------EEecchhhhHhh-hhhccceeee
Confidence               1  11222222211                                        446666666666 5667999999


Q ss_pred             EecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCc-ce
Q 021291          177 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE-PV  255 (314)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~-~v  255 (314)
                      ||+++++....+.        +|    .+.+..++ |+|+   |+ .+++.+.||+|++|.-+...+++++-.+..+ .-
T Consensus       705 WDl~~~~~~~~l~--------gH----tdqIf~~A-WSpd---Gr-~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRg  767 (1012)
T KOG1445|consen  705 WDLANAKLYSRLV--------GH----TDQIFGIA-WSPD---GR-RIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRG  767 (1012)
T ss_pred             eehhhhhhhheec--------cC----cCceeEEE-ECCC---Cc-ceeeeecCceEEEeCCCCCCCccccCCCCccCcc
Confidence            9999999888888        78    44788887 9998   76 8999999999999999987777776554322 33


Q ss_pred             EEEEEeCCCCeEEEecCCC----cEEEEecCCC
Q 021291          256 LCLSIDESCNGGISGGADQ----KIVLYNLDHS  284 (314)
Q Consensus       256 ~~~~~~~~~~~l~s~s~dg----~i~iw~~~~~  284 (314)
                      -.+.|--+|++++..+.|.    .|.+||.++-
T Consensus       768 ARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l  800 (1012)
T KOG1445|consen  768 ARILWACDGRIVIVVGFDKSSERQVQMYDAQTL  800 (1012)
T ss_pred             eeEEEEecCcEEEEecccccchhhhhhhhhhhc
Confidence            4577877888887777664    4777776543

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.62  E-value=3.1e-14  Score=123.98  Aligned_cols=208  Identities=17%  Similarity=0.188  Sum_probs=137.7

Q ss_pred             EEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCC
Q 021291           23 DVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNP  102 (314)
Q Consensus        23 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  102 (314)
                      -++|..+..+|+++|.-..|+|||..+..+...+..... ..|+++.-+-. .|+.+++|..||.|++||.+...... +
T Consensus      1170 v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~-t~vTaLS~~~~-~gn~i~AGfaDGsvRvyD~R~a~~ds-~ 1246 (1387)
T KOG1517|consen 1170 VVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSS-TLVTALSADLV-HGNIIAAGFADGSVRVYDRRMAPPDS-L 1246 (1387)
T ss_pred             eeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCC-ccceeeccccc-CCceEEEeecCCceEEeecccCCccc-c
Confidence            356777555666666688999999998887777654432 45788776542 57999999999999999998653211 0


Q ss_pred             eeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCC
Q 021291          103 SLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTA  182 (314)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~  182 (314)
                      +...+.+........                                    +.+.+.|-.-++ +|+.||.|++||++..
T Consensus      1247 v~~~R~h~~~~~Iv~------------------------------------~slq~~G~~elv-Sgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1247 VCVYREHNDVEPIVH------------------------------------LSLQRQGLGELV-SGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred             ceeecccCCccccee------------------------------------EEeecCCCccee-eeccCCeEEEEecccC
Confidence            111111111100000                                    345555544343 7888999999999985


Q ss_pred             ceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecC-------Ccce
Q 021291          183 ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH-------LEPV  255 (314)
Q Consensus       183 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h-------~~~v  255 (314)
                      .....+...      .|.. ..+..+++. .++..+    ++|+|+. +.|+||++.  ++.+..++.+       ...+
T Consensus      1290 ~~e~~~~iv------~~~~-yGs~lTal~-VH~hap----iiAsGs~-q~ikIy~~~--G~~l~~~k~n~~F~~q~~gs~ 1354 (1387)
T KOG1517|consen 1290 SKETFLTIV------AHWE-YGSALTALT-VHEHAP----IIASGSA-QLIKIYSLS--GEQLNIIKYNPGFMGQRIGSV 1354 (1387)
T ss_pred             cccccceee------eccc-cCccceeee-eccCCC----eeeecCc-ceEEEEecC--hhhhcccccCcccccCcCCCc
Confidence            333322211      2211 122467776 777744    8999988 999999998  4444444322       3467


Q ss_pred             EEEEEeCCCCeEEEecCCCcEEEEecCCCe
Q 021291          256 LCLSIDESCNGGISGGADQKIVLYNLDHST  285 (314)
Q Consensus       256 ~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~  285 (314)
                      .+++|+|...++|.|+.|..|.||..+.++
T Consensus      1355 scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1355 SCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             ceeeecchhHhhhhccCCceEEEeecCCcC
Confidence            999999999999999999999999877654

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=3.6e-13  Score=110.16  Aligned_cols=253  Identities=15%  Similarity=0.123  Sum_probs=153.1

Q ss_pred             CCCCceeEEEEccCCCEE-EEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCC
Q 021291           16 GHRASVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE   94 (314)
Q Consensus        16 ~h~~~v~~~~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~   94 (314)
                      +|...-+.|..+|||+|+ |||.+--.|++||+.+-.  ..+.-|..+..|.-.-.+.  |-..++---.|.+|.+-..-
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS--LKFERhlDae~V~feiLsD--D~SK~v~L~~DR~IefHak~  124 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS--LKFERHLDAEVVDFEILSD--DYSKSVFLQNDRTIEFHAKY  124 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccce--eeeeecccccceeEEEecc--chhhheEeecCceeeehhhc
Confidence            477888999999999975 678889999999987543  3455565545565555555  65666666677777664332


Q ss_pred             CCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC---ceeccCCCceEEEeecCc
Q 021291           95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK---DDVPAEGPKYMAVAGEQL  171 (314)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~d  171 (314)
                      ....    ...++......+ ++ ..+-.......+.....+++..++.+.-.......   +..++...  |+++|+.|
T Consensus       125 G~hy----~~RIP~~GRDm~-y~-~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hg--Lla~Gt~~  196 (703)
T KOG2321|consen  125 GRHY----RTRIPKFGRDMK-YH-KPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHG--LLACGTED  196 (703)
T ss_pred             Ceee----eeecCcCCcccc-cc-CCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccc--eEEecccC
Confidence            2110    000110000000 00 00111223333444444455555433322111111   55666543  44478889


Q ss_pred             CeEEEEecCCCceeeeecccccCCCCCcCC-CCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEe-ee
Q 021291          172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSS-KGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA-MK  249 (314)
Q Consensus       172 ~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~-~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~-~~  249 (314)
                      |.|.+||.++...+.++.....+++  |+. .....++++. |+.+   |- .+++|..+|.|.|||++. .+++.. -.
T Consensus       197 g~VEfwDpR~ksrv~~l~~~~~v~s--~pg~~~~~svTal~-F~d~---gL-~~aVGts~G~v~iyDLRa-~~pl~~kdh  268 (703)
T KOG2321|consen  197 GVVEFWDPRDKSRVGTLDAASSVNS--HPGGDAAPSVTALK-FRDD---GL-HVAVGTSTGSVLIYDLRA-SKPLLVKDH  268 (703)
T ss_pred             ceEEEecchhhhhheeeecccccCC--CccccccCcceEEE-ecCC---ce-eEEeeccCCcEEEEEccc-CCceeeccc
Confidence            9999999999887777764332221  221 1233577887 9876   44 899999999999999998 555543 33


Q ss_pred             cCCcceEEEEEeCC--CCeEEEecCCCcEEEEecCCCeeeEe
Q 021291          250 VHLEPVLCLSIDES--CNGGISGGADQKIVLYNLDHSTYVLF  289 (314)
Q Consensus       250 ~h~~~v~~~~~~~~--~~~l~s~s~dg~i~iw~~~~~~~~~~  289 (314)
                      +..-+|..+.|.+.  ...|+|. ....++|||-.+|+....
T Consensus       269 ~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~as  309 (703)
T KOG2321|consen  269 GYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMAS  309 (703)
T ss_pred             CCccceeeecccccCCCceEEec-chHHhhhcccccCCceee
Confidence            44568999999443  4445554 456899999999987653

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=1.2e-12  Score=110.79  Aligned_cols=223  Identities=12%  Similarity=0.030  Sum_probs=133.4

Q ss_pred             EEecCCCCceeEEEEccCCCEEEEec---CCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEe-ecCC-
Q 021291           12 AVLRGHRASVTDVCFHQTKPILFAGT---TGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ-GRDG-   86 (314)
Q Consensus        12 ~~l~~h~~~v~~~~~~~~~~~l~s~~---~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~dg-   86 (314)
                      +.+..+...+...+|+|||+.|+..+   .+..|.+|++.+++..... ...  ..+....|+|  ||+.|+.. +.+| 
T Consensus       192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~--~~~~~~~~SP--DG~~La~~~~~~g~  266 (429)
T PRK03629        192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFP--RHNGAPAFSP--DGSKLAFALSKTGS  266 (429)
T ss_pred             EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCC--CCcCCeEECC--CCCEEEEEEcCCCC
Confidence            44445667899999999999888653   3457999999887643322 222  2255789999  99988754 4455 


Q ss_pred             -eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEE
Q 021291           87 -TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA  165 (314)
Q Consensus        87 -~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (314)
                       .|.+||+.+++...     +.......                                      ...+|+|+|+.++.
T Consensus       267 ~~I~~~d~~tg~~~~-----lt~~~~~~--------------------------------------~~~~wSPDG~~I~f  303 (429)
T PRK03629        267 LNLYVMDLASGQIRQ-----VTDGRSNN--------------------------------------TEPTWFPDSQNLAY  303 (429)
T ss_pred             cEEEEEECCCCCEEE-----ccCCCCCc--------------------------------------CceEECCCCCEEEE
Confidence             58889998765321     11100000                                      00569999987765


Q ss_pred             EeecCcC--eEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEE-eecC--CcEEEEEccC
Q 021291          166 VAGEQLS--EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA-GYED--GSILVWDIRN  240 (314)
Q Consensus       166 ~~g~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~-g~~d--g~i~vwd~~~  240 (314)
                      ++ ..++  .|.++|+.+++.. .+.        ..    ........ |+|+   |+ +|+. +..+  ..|.+||+.+
T Consensus       304 ~s-~~~g~~~Iy~~d~~~g~~~-~lt--------~~----~~~~~~~~-~SpD---G~-~Ia~~~~~~g~~~I~~~dl~~  364 (429)
T PRK03629        304 TS-DQAGRPQVYKVNINGGAPQ-RIT--------WE----GSQNQDAD-VSSD---GK-FMVMVSSNGGQQHIAKQDLAT  364 (429)
T ss_pred             Ee-CCCCCceEEEEECCCCCeE-Eee--------cC----CCCccCEE-ECCC---CC-EEEEEEccCCCceEEEEECCC
Confidence            43 3334  4555577665432 332        11    11223444 9998   55 4544 4333  3588899886


Q ss_pred             CCCceEeeecCCcceEEEEEeCCCCeEEEecCCCc---EEEEecCCCeeeEeeeeeeecCCCceeceeeccc
Q 021291          241 PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQK---IVLYNLDHSTYVLFGIGFVCDQEGNKFGTTWHIR  309 (314)
Q Consensus       241 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~---i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  309 (314)
                       +. ...+... .......|+|||++|+.++.++.   +.+++++.+. ...+.+    .++......|.+.
T Consensus       365 -g~-~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~-~~~l~~----~~~~~~~p~Wsp~  428 (429)
T PRK03629        365 -GG-VQVLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KARLPA----TDGQVKFPAWSPY  428 (429)
T ss_pred             -CC-eEEeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC-eEECcc----CCCCcCCcccCCC
Confidence             44 3334321 23346789999999998888764   6777775433 333222    3455556667653

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=2e-12  Score=110.06  Aligned_cols=226  Identities=11%  Similarity=0.017  Sum_probs=138.6

Q ss_pred             CCceEEecCCCCceeEEEEccCCCEEEEecC---CCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEE-Eee
Q 021291            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTT---GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQG   83 (314)
Q Consensus         8 ~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~   83 (314)
                      +...+.+..|...+.+.+|+|||+.|+..+.   +..|.+||+.+++.. .+..+.  ..+...+|+|  ||+.|+ +.+
T Consensus       191 g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~--g~~~~~~~SP--DG~~la~~~~  265 (435)
T PRK05137        191 GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFP--GMTFAPRFSP--DGRKVVMSLS  265 (435)
T ss_pred             CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCC--CcccCcEECC--CCCEEEEEEe
Confidence            3445667778889999999999998887653   468999999887654 343444  3377899999  998775 556


Q ss_pred             cCCe--EEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCC
Q 021291           84 RDGT--VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGP  161 (314)
Q Consensus        84 ~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (314)
                      .++.  |.+||+.+++...     +......  ..                                    ..+|+|+|+
T Consensus       266 ~~g~~~Iy~~d~~~~~~~~-----Lt~~~~~--~~------------------------------------~~~~spDG~  302 (435)
T PRK05137        266 QGGNTDIYTMDLRSGTTTR-----LTDSPAI--DT------------------------------------SPSYSPDGS  302 (435)
T ss_pred             cCCCceEEEEECCCCceEE-----ccCCCCc--cC------------------------------------ceeEcCCCC
Confidence            6655  7777887765321     1111100  00                                    045999998


Q ss_pred             ceEEEeecCc--CeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeec-C--CcEEEE
Q 021291          162 KYMAVAGEQL--SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE-D--GSILVW  236 (314)
Q Consensus       162 ~~~~~~g~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~-d--g~i~vw  236 (314)
                      .++.++ ..+  ..|+++|+..++.. .+..        +    .+...... |+|+   |+ .|+.... .  ..|.+|
T Consensus       303 ~i~f~s-~~~g~~~Iy~~d~~g~~~~-~lt~--------~----~~~~~~~~-~Spd---G~-~ia~~~~~~~~~~i~~~  363 (435)
T PRK05137        303 QIVFES-DRSGSPQLYVMNADGSNPR-RISF--------G----GGRYSTPV-WSPR---GD-LIAFTKQGGGQFSIGVM  363 (435)
T ss_pred             EEEEEE-CCCCCCeEEEEECCCCCeE-Eeec--------C----CCcccCeE-ECCC---CC-EEEEEEcCCCceEEEEE
Confidence            776543 223  36888898765543 3331        1    11233444 9998   55 5554433 2  368888


Q ss_pred             EccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCC------CcEEEEecCCCeeeEeeeeeeecCCCceeceeeccc
Q 021291          237 DIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD------QKIVLYNLDHSTYVLFGIGFVCDQEGNKFGTTWHIR  309 (314)
Q Consensus       237 d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  309 (314)
                      |+.. + ....+.. ...+....|+|||+.|+..+.+      ..+.++|++.+... .+   .  ..+......|.+.
T Consensus       364 d~~~-~-~~~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~-~l---~--~~~~~~~p~Wsp~  433 (435)
T PRK05137        364 KPDG-S-GERILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNER-EV---P--TPGDASDPAWSPL  433 (435)
T ss_pred             ECCC-C-ceEeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceE-Ec---c--CCCCccCcccCCC
Confidence            8764 3 2333332 2356788999999988665442      25777887765442 21   1  2333445577654

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=2.7e-13  Score=114.89  Aligned_cols=196  Identities=14%  Similarity=0.092  Sum_probs=123.2

Q ss_pred             CCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC---CeEEEEeCCCCCCCCCCeeeeecceeeEEE
Q 021291           39 GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD---GTVKCWDIENGGLSSNPSLTIKTNSYHFCK  115 (314)
Q Consensus        39 dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  115 (314)
                      +..|.+||.+... ...+..+.  ..+...+|+|  +|+.|+.++.+   ..|.+||+.+++...  +........    
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~--~~v~~p~wSP--DG~~la~~s~~~~~~~i~i~dl~tg~~~~--l~~~~g~~~----  251 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSS--QPLMSPAWSP--DGSKLAYVSFENKKSQLVVHDLRSGARKV--VASFRGHNG----  251 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCC--CccccceEcC--CCCEEEEEEecCCCcEEEEEeCCCCceEE--EecCCCccC----
Confidence            5789999986544 45555565  4499999999  99999987654   369999998764311  111110000    


Q ss_pred             eeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEE--EecCCCceeeeeccccc
Q 021291          116 LSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI--WDLNTAERCTRLHQNSC  193 (314)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v--wd~~~~~~~~~~~~~~~  193 (314)
                                                           ..+|+|+|+.+++ +.+.+|.+.|  ||+.+++. ..+.    
T Consensus       252 -------------------------------------~~~wSPDG~~La~-~~~~~g~~~Iy~~d~~~~~~-~~lt----  288 (429)
T PRK01742        252 -------------------------------------APAFSPDGSRLAF-ASSKDGVLNIYVMGANGGTP-SQLT----  288 (429)
T ss_pred             -------------------------------------ceeECCCCCEEEE-EEecCCcEEEEEEECCCCCe-Eeec----
Confidence                                                 0569999987765 3444676555  56665543 3343    


Q ss_pred             CCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCC
Q 021291          194 GGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD  273 (314)
Q Consensus       194 ~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d  273 (314)
                          .+    ........ |+||   |+.+++++..++...||+++..+.....+ .+..  ....|+|+|++|+..+.+
T Consensus       289 ----~~----~~~~~~~~-wSpD---G~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~  353 (429)
T PRK01742        289 ----SG----AGNNTEPS-WSPD---GQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGD  353 (429)
T ss_pred             ----cC----CCCcCCEE-ECCC---CCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCC
Confidence                22    22344555 9998   55345555567888899876533333333 3433  457899999999888776


Q ss_pred             CcEEEEecCCCeeeEe-----eeeeeecCCCceece
Q 021291          274 QKIVLYNLDHSTYVLF-----GIGFVCDQEGNKFGT  304 (314)
Q Consensus       274 g~i~iw~~~~~~~~~~-----~~~~~~~~~~~~~~~  304 (314)
                      + +.+||+.+++....     ....+++|+|..+..
T Consensus       354 ~-i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~  388 (429)
T PRK01742        354 N-VVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIY  388 (429)
T ss_pred             C-EEEEECCCCCeEEecCCCCCCCceECCCCCEEEE
Confidence            5 56699988764322     122356777765554

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.58  E-value=3.9e-13  Score=100.71  Aligned_cols=157  Identities=16%  Similarity=0.272  Sum_probs=102.5

Q ss_pred             eEEEEccCCCEEEEecC----------CCeEEEEeCCC-CeEEEEEeccCCcccEEEEEEcccCCCCeEEE--eecCCeE
Q 021291           22 TDVCFHQTKPILFAGTT----------GGELRIWDTVQ-HRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS--QGRDGTV   88 (314)
Q Consensus        22 ~~~~~~~~~~~l~s~~~----------dg~v~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s--~~~dg~v   88 (314)
                      ..+.|+++|++|+.-..          -|...||.++. +.....+..... .+|.+++|+|  +++.|+.  |..++.|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~-~~I~~~~WsP--~g~~favi~g~~~~~v   85 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKE-GPIHDVAWSP--NGNEFAVIYGSMPAKV   85 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCC-CceEEEEECc--CCCEEEEEEccCCccc
Confidence            45789999987765332          23455555532 334444443322 3499999999  8888764  4467899


Q ss_pred             EEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEe-
Q 021291           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA-  167 (314)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  167 (314)
                      .+||++..     ++..+.......                                        +.|+|+|+.+++++ 
T Consensus        86 ~lyd~~~~-----~i~~~~~~~~n~----------------------------------------i~wsP~G~~l~~~g~  120 (194)
T PF08662_consen   86 TLYDVKGK-----KIFSFGTQPRNT----------------------------------------ISWSPDGRFLVLAGF  120 (194)
T ss_pred             EEEcCccc-----EeEeecCCCceE----------------------------------------EEECCCCCEEEEEEc
Confidence            99999722     133333322211                                        56999998776532 


Q ss_pred             ecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeec------CCcEEEEEccCC
Q 021291          168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE------DGSILVWDIRNP  241 (314)
Q Consensus       168 g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~------dg~i~vwd~~~~  241 (314)
                      +...|.|.+||.++.+.+..+.         |     ..+..+. |+|+   |+ +++++..      |..++||+..  
T Consensus       121 ~n~~G~l~~wd~~~~~~i~~~~---------~-----~~~t~~~-WsPd---Gr-~~~ta~t~~r~~~dng~~Iw~~~--  179 (194)
T PF08662_consen  121 GNLNGDLEFWDVRKKKKISTFE---------H-----SDATDVE-WSPD---GR-YLATATTSPRLRVDNGFKIWSFQ--  179 (194)
T ss_pred             cCCCcEEEEEECCCCEEeeccc---------c-----CcEEEEE-EcCC---CC-EEEEEEeccceeccccEEEEEec--
Confidence            1335789999999888877665         2     2356776 9998   77 6666653      7889999986  


Q ss_pred             CCceEe
Q 021291          242 GIPLTA  247 (314)
Q Consensus       242 ~~~~~~  247 (314)
                      ++.+..
T Consensus       180 G~~l~~  185 (194)
T PF08662_consen  180 GRLLYK  185 (194)
T ss_pred             CeEeEe
Confidence            555544

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=1.2e-12  Score=111.18  Aligned_cols=207  Identities=10%  Similarity=0.011  Sum_probs=128.5

Q ss_pred             CCceEEecCCCCceeEEEEccCCCEEEEecC---CCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEE-Eee
Q 021291            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTT---GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQG   83 (314)
Q Consensus         8 ~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~   83 (314)
                      +...+.+..|...+.+.+|+|||+.|+..+.   +..|.+||+.+++... +....  ....+.+|+|  +++.|+ +.+
T Consensus       193 g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~--g~~~~~~~Sp--DG~~l~~~~s  267 (433)
T PRK04922        193 GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFR--GINGAPSFSP--DGRRLALTLS  267 (433)
T ss_pred             CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCC--CCccCceECC--CCCEEEEEEe
Confidence            3445556667788999999999999887764   3479999998876543 32233  2256789999  988775 555


Q ss_pred             cCC--eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCC
Q 021291           84 RDG--TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGP  161 (314)
Q Consensus        84 ~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (314)
                      .+|  .|.+||+.+++...     +.......                                      ...+|+|+|+
T Consensus       268 ~~g~~~Iy~~d~~~g~~~~-----lt~~~~~~--------------------------------------~~~~~spDG~  304 (433)
T PRK04922        268 RDGNPEIYVMDLGSRQLTR-----LTNHFGID--------------------------------------TEPTWAPDGK  304 (433)
T ss_pred             CCCCceEEEEECCCCCeEE-----CccCCCCc--------------------------------------cceEECCCCC
Confidence            555  59999998775321     11110000                                      0045999998


Q ss_pred             ceEEEeecCcC--eEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEee-cCC--cEEEE
Q 021291          162 KYMAVAGEQLS--EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-EDG--SILVW  236 (314)
Q Consensus       162 ~~~~~~g~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~-~dg--~i~vw  236 (314)
                      .++.+ ...++  .|+++|+.+++.. .+...      +.      ...... |+|+   |+ .|+..+ .++  .|.+|
T Consensus       305 ~l~f~-sd~~g~~~iy~~dl~~g~~~-~lt~~------g~------~~~~~~-~SpD---G~-~Ia~~~~~~~~~~I~v~  365 (433)
T PRK04922        305 SIYFT-SDRGGRPQIYRVAASGGSAE-RLTFQ------GN------YNARAS-VSPD---GK-KIAMVHGSGGQYRIAVM  365 (433)
T ss_pred             EEEEE-ECCCCCceEEEEECCCCCeE-EeecC------CC------CccCEE-ECCC---CC-EEEEEECCCCceeEEEE
Confidence            77654 33344  4777777666532 22210      11      222445 9998   55 555443 332  69999


Q ss_pred             EccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCC---CcEEEEecCCC
Q 021291          237 DIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD---QKIVLYNLDHS  284 (314)
Q Consensus       237 d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d---g~i~iw~~~~~  284 (314)
                      |+.+ ++.. .+. +........|+|+|++|+..+.+   +.|.+++++.+
T Consensus       366 d~~~-g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~  413 (433)
T PRK04922        366 DLST-GSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR  413 (433)
T ss_pred             ECCC-CCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            9976 4433 343 23345567999999988766653   35777887543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=2.7e-12  Score=108.71  Aligned_cols=226  Identities=12%  Similarity=0.057  Sum_probs=134.0

Q ss_pred             CceEEecCCCCceeEEEEccCCCEEEEecCC---CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEE-Eeec
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTG---GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGR   84 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~   84 (314)
                      ...+.+..+...+.+.+|+|||+.|+..+.+   ..|.+||+.+++... +....  ..+...+|+|  |++.|+ +.+.
T Consensus       186 ~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~--g~~~~~~~SP--DG~~la~~~~~  260 (427)
T PRK02889        186 QNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFK--GSNSAPAWSP--DGRTLAVALSR  260 (427)
T ss_pred             CCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCC--CCccceEECC--CCCEEEEEEcc
Confidence            3445556678889999999999998876643   469999998886543 33233  2367899999  998876 5677


Q ss_pred             CCeEEEEeC--CCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCc
Q 021291           85 DGTVKCWDI--ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPK  162 (314)
Q Consensus        85 dg~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (314)
                      +|...||.+  .++...     .+.......                                      ...+|+|||+.
T Consensus       261 ~g~~~Iy~~d~~~~~~~-----~lt~~~~~~--------------------------------------~~~~wSpDG~~  297 (427)
T PRK02889        261 DGNSQIYTVNADGSGLR-----RLTQSSGID--------------------------------------TEPFFSPDGRS  297 (427)
T ss_pred             CCCceEEEEECCCCCcE-----ECCCCCCCC--------------------------------------cCeEEcCCCCE
Confidence            887777655  333211     111100000                                      00459999988


Q ss_pred             eEEEeecCcCeEEEEec--CCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCC---cEEEEE
Q 021291          163 YMAVAGEQLSEVEIWDL--NTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG---SILVWD  237 (314)
Q Consensus       163 ~~~~~g~~d~~i~vwd~--~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg---~i~vwd  237 (314)
                      ++.+ +..++...+|.+  .+++. ..+...      +      ....... |+|+   |+ +|+..+.++   .|.+||
T Consensus       298 l~f~-s~~~g~~~Iy~~~~~~g~~-~~lt~~------g------~~~~~~~-~SpD---G~-~Ia~~s~~~g~~~I~v~d  358 (427)
T PRK02889        298 IYFT-SDRGGAPQIYRMPASGGAA-QRVTFT------G------SYNTSPR-ISPD---GK-LLAYISRVGGAFKLYVQD  358 (427)
T ss_pred             EEEE-ecCCCCcEEEEEECCCCce-EEEecC------C------CCcCceE-ECCC---CC-EEEEEEccCCcEEEEEEE
Confidence            7654 433455566654  44432 222210      1      1122344 9998   55 565554443   699999


Q ss_pred             ccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCC---cEEEEecCCCeeeEeeeeeeecCCCceeceeeccc
Q 021291          238 IRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQ---KIVLYNLDHSTYVLFGIGFVCDQEGNKFGTTWHIR  309 (314)
Q Consensus       238 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  309 (314)
                      +.+ +... .+.. ........|+|+|+.|+..+.++   .+.+.+++ ++.....    ..+.|..-...|.+.
T Consensus       359 ~~~-g~~~-~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g~~~~~l----~~~~g~~~~p~wsp~  425 (427)
T PRK02889        359 LAT-GQVT-ALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-GRIKQRL----SVQGGDVREPSWGPF  425 (427)
T ss_pred             CCC-CCeE-EccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEECC-CCceEEe----ecCCCCCCCCccCCC
Confidence            986 4433 3332 23346789999999987777544   24455553 3322222    135566666677654

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.57  E-value=7.2e-13  Score=100.97  Aligned_cols=223  Identities=15%  Similarity=0.093  Sum_probs=146.7

Q ss_pred             CCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeC-CCCeE--EEEEeccCCcccEEEEEEcccCCCCeEEEee
Q 021291            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDT-VQHRT--VSSSWVHSAAHGIVSVATGPSIGLNKVISQG   83 (314)
Q Consensus         7 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~-~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (314)
                      +.++.++|+.|...|++++|+|..+.|++|+.|..-+||.. ..++-  ...+..+.  ...+++.|+|  .++.|++|+
T Consensus        44 ~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiN--rAAt~V~WsP--~enkFAVgS  119 (361)
T KOG1523|consen   44 LWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRIN--RAATCVKWSP--KENKFAVGS  119 (361)
T ss_pred             CceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEec--cceeeEeecC--cCceEEecc
Confidence            35789999999999999999999999999999999999998 44433  33344455  4499999999  899999999


Q ss_pred             cCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCce
Q 021291           84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY  163 (314)
Q Consensus        84 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (314)
                      ....|.||-++...--.  +-..-..+......+                                    ++|+|++  .
T Consensus       120 gar~isVcy~E~ENdWW--VsKhikkPirStv~s------------------------------------ldWhpnn--V  159 (361)
T KOG1523|consen  120 GARLISVCYYEQENDWW--VSKHIKKPIRSTVTS------------------------------------LDWHPNN--V  159 (361)
T ss_pred             CccEEEEEEEeccccee--hhhhhCCccccceee------------------------------------eeccCCc--c
Confidence            99999999887643221  000011111111111                                    5688876  3


Q ss_pred             EEEeecCcCeEEEEecCCCce-----e----eeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEE
Q 021291          164 MAVAGEQLSEVEIWDLNTAER-----C----TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL  234 (314)
Q Consensus       164 ~~~~g~~d~~i~vwd~~~~~~-----~----~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~  234 (314)
                      ++++|+.|+..++|..--...     .    ..++..+.   ........+.+..+. |+|+   |. .|+-.+.|..+.
T Consensus       160 LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~l---m~E~~~~ggwvh~v~-fs~s---G~-~lawv~Hds~v~  231 (361)
T KOG1523|consen  160 LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQL---MSEASSSGGWVHGVL-FSPS---GN-RLAWVGHDSTVS  231 (361)
T ss_pred             eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHH---HHhhccCCCceeeeE-eCCC---CC-EeeEecCCCceE
Confidence            445788899999996421110     0    00000000   000112456788887 9998   55 788888999999


Q ss_pred             EEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecC
Q 021291          235 VWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD  282 (314)
Q Consensus       235 vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~  282 (314)
                      +-|...+.+.+..+..-.-+..++.|-.+. .++.++.|..-.++...
T Consensus       232 ~~da~~p~~~v~~~~~~~lP~ls~~~ise~-~vv~ag~~c~P~lf~~~  278 (361)
T KOG1523|consen  232 FVDAAGPSERVQSVATAQLPLLSVSWISEN-SVVAAGYDCGPVLFVTD  278 (361)
T ss_pred             EeecCCCchhccchhhccCCceeeEeecCC-ceeecCCCCCceEEEec
Confidence            999887554555555445788888884443 35666677444444443

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.56  E-value=7.9e-14  Score=113.16  Aligned_cols=190  Identities=11%  Similarity=0.129  Sum_probs=126.6

Q ss_pred             CCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCe
Q 021291            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (314)
Q Consensus         8 ~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (314)
                      ++.-+...+|.+.|.|-.|+|||.-|+|++.||.|++|. ++|-...++....  .+|.|++|.|  +++.++-+-. +.
T Consensus        94 ~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~--~~v~c~~W~p--~S~~vl~c~g-~h  167 (737)
T KOG1524|consen   94 ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNE--ESIRCARWAP--NSNSIVFCQG-GH  167 (737)
T ss_pred             chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcC--ceeEEEEECC--CCCceEEecC-Ce
Confidence            345566778999999999999999999999999999998 5666555554455  5599999999  6555554332 34


Q ss_pred             EEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEe
Q 021291           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA  167 (314)
Q Consensus        88 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (314)
                      +.|=-+.....    .+..+.+......                                      ++|++..+ + +++
T Consensus       168 ~~IKpL~~n~k----~i~WkAHDGiiL~--------------------------------------~~W~~~s~-l-I~s  203 (737)
T KOG1524|consen  168 ISIKPLAANSK----IIRWRAHDGLVLS--------------------------------------LSWSTQSN-I-IAS  203 (737)
T ss_pred             EEEeecccccc----eeEEeccCcEEEE--------------------------------------eecCcccc-c-eee
Confidence            44433332211    2222222221111                                      45777765 3 347


Q ss_pred             ecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEe
Q 021291          168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA  247 (314)
Q Consensus       168 g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~  247 (314)
                      |++|-..++||... ..+..-.        .|    .-++++++ |.|+ .    .++.++.+ ++++            
T Consensus       204 gGED~kfKvWD~~G-~~Lf~S~--------~~----ey~ITSva-~npd-~----~~~v~S~n-t~R~------------  251 (737)
T KOG1524|consen  204 GGEDFRFKIWDAQG-ANLFTSA--------AE----EYAITSVA-FNPE-K----DYLLWSYN-TARF------------  251 (737)
T ss_pred             cCCceeEEeecccC-cccccCC--------hh----ccceeeee-eccc-c----ceeeeeee-eeee------------
Confidence            88899999999764 4443322        33    44788998 9998 2    45555432 3331            


Q ss_pred             eecCCcceEEEEEeCCCCeEEEecCCCcEEEE
Q 021291          248 MKVHLEPVLCLSIDESCNGGISGGADQKIVLY  279 (314)
Q Consensus       248 ~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw  279 (314)
                      -+...+.|..++|++||..++.|...|.+.+=
T Consensus       252 ~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  252 SSPRVGSIFNLSWSADGTQATCGTSTGQLIVA  283 (737)
T ss_pred             cCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence            11235789999999999999999999987653

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.54  E-value=1.5e-11  Score=101.36  Aligned_cols=200  Identities=17%  Similarity=0.113  Sum_probs=130.7

Q ss_pred             EEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceee
Q 021291           33 LFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYH  112 (314)
Q Consensus        33 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  112 (314)
                      +++-..+|.|.|.|..+.+.+..+.....  .-..+.|+|  |++++++++.||.|.++|+.+.+.+.    +++.....
T Consensus         9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~--~h~~~~~s~--Dgr~~yv~~rdg~vsviD~~~~~~v~----~i~~G~~~   80 (369)
T PF02239_consen    9 YVVERGSGSVAVIDGATNKVVARIPTGGA--PHAGLKFSP--DGRYLYVANRDGTVSVIDLATGKVVA----TIKVGGNP   80 (369)
T ss_dssp             EEEEGGGTEEEEEETTT-SEEEEEE-STT--EEEEEE-TT---SSEEEEEETTSEEEEEETTSSSEEE----EEE-SSEE
T ss_pred             EEEecCCCEEEEEECCCCeEEEEEcCCCC--ceeEEEecC--CCCEEEEEcCCCeEEEEECCcccEEE----EEecCCCc
Confidence            34566789999999999999999986542  245678999  99999999999999999999987644    34333322


Q ss_pred             EEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccc
Q 021291          113 FCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNS  192 (314)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~  192 (314)
                      ..                                       ++++++|+++++ +...++.+.++|.++.+.+..++...
T Consensus        81 ~~---------------------------------------i~~s~DG~~~~v-~n~~~~~v~v~D~~tle~v~~I~~~~  120 (369)
T PF02239_consen   81 RG---------------------------------------IAVSPDGKYVYV-ANYEPGTVSVIDAETLEPVKTIPTGG  120 (369)
T ss_dssp             EE---------------------------------------EEE--TTTEEEE-EEEETTEEEEEETTT--EEEEEE--E
T ss_pred             ce---------------------------------------EEEcCCCCEEEE-EecCCCceeEeccccccceeeccccc
Confidence            22                                       668999987765 55568999999999999988876311


Q ss_pred             cCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEE-ec
Q 021291          193 CGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGIS-GG  271 (314)
Q Consensus       193 ~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-~s  271 (314)
                      .     ........+.++. .+|.   +..++++--+.+.|.+.|......+...............|+|++++++. ..
T Consensus       121 ~-----~~~~~~~Rv~aIv-~s~~---~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~  191 (369)
T PF02239_consen  121 M-----PVDGPESRVAAIV-ASPG---RPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAAN  191 (369)
T ss_dssp             E------TTTS---EEEEE-E-SS---SSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEG
T ss_pred             c-----cccccCCCceeEE-ecCC---CCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeeccc
Confidence            0     0001233455565 5665   33256666666889888987743333333334567788999999998755 45


Q ss_pred             CCCcEEEEecCCCeeeEe
Q 021291          272 ADQKIVLYNLDHSTYVLF  289 (314)
Q Consensus       272 ~dg~i~iw~~~~~~~~~~  289 (314)
                      .++.|-++|..+++.+..
T Consensus       192 ~sn~i~viD~~~~k~v~~  209 (369)
T PF02239_consen  192 GSNKIAVIDTKTGKLVAL  209 (369)
T ss_dssp             GGTEEEEEETTTTEEEEE
T ss_pred             ccceeEEEeeccceEEEE
Confidence            577999999999887764

...

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.53  E-value=1.8e-12  Score=110.09  Aligned_cols=231  Identities=12%  Similarity=0.071  Sum_probs=143.4

Q ss_pred             CCeEEEEeCCCC-eEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecc----eeeE
Q 021291           39 GGELRIWDTVQH-RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTN----SYHF  113 (314)
Q Consensus        39 dg~v~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~----~~~~  113 (314)
                      ++.+.||+++.. .....+. ..  ..|.++.|+|. +.++++.|..+|.|.+||++.+.......+.....    +...
T Consensus       221 ~~~~~vW~~~~p~~Pe~~~~-~~--s~v~~~~f~p~-~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~  296 (555)
T KOG1587|consen  221 DGVLLVWSLKNPNTPELVLE-SP--SEVTCLKFCPF-DPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTA  296 (555)
T ss_pred             CceEEEEecCCCCCceEEEe-cC--CceeEEEeccC-CcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEE
Confidence            357999999876 3333333 23  55999999997 66889999999999999999876521111122211    2222


Q ss_pred             EEeeeeecc-ccccccCCCCcceeeccCCceeee----cCCCC---------CC--ceeccCCCceEEEeecCcCeEEEE
Q 021291          114 CKLSLVKEP-YANAKQANEPKDCYEREVGETVDT----DSLCD---------SK--DDVPAEGPKYMAVAGEQLSEVEIW  177 (314)
Q Consensus       114 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~---------~~--~~~~~~~~~~~~~~g~~d~~i~vw  177 (314)
                      +.+.....+ .......++....|+++.......    ....|         ..  ++|.+...+.++ .|+++|.|.-=
T Consensus       297 vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~Fi-VGTe~G~v~~~  375 (555)
T KOG1587|consen  297 VVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFI-VGTEEGKVYKG  375 (555)
T ss_pred             EEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEE-EEcCCcEEEEE
Confidence            222222222 122333456666666544322111    11111         11  778887777776 48888988773


Q ss_pred             ecCCCcee--eeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcce
Q 021291          178 DLNTAERC--TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPV  255 (314)
Q Consensus       178 d~~~~~~~--~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v  255 (314)
                      +....+..  ..++..      .+.....+.+.++. ++|-..   ..+++++ |.+++||.......|+..+..+...|
T Consensus       376 ~r~g~~~~~~~~~~~~------~~~~~h~g~v~~v~-~nPF~~---k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v  444 (555)
T KOG1587|consen  376 CRKGYTPAPEVSYKGH------STFITHIGPVYAVS-RNPFYP---KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYV  444 (555)
T ss_pred             eccCCccccccccccc------ccccccCcceEeee-cCCCcc---ceeeeec-cceeEeccccCCCCcchhhhhcccee
Confidence            33222211  112210      11122456788887 888743   2555555 99999999984388999999999999


Q ss_pred             EEEEEeCCCC-eEEEecCCCcEEEEecCCCe
Q 021291          256 LCLSIDESCN-GGISGGADQKIVLYNLDHST  285 (314)
Q Consensus       256 ~~~~~~~~~~-~l~s~s~dg~i~iw~~~~~~  285 (314)
                      ++++|+|... .++++..||.|.+||+....
T Consensus       445 ~~vaWSptrpavF~~~d~~G~l~iWDLl~~~  475 (555)
T KOG1587|consen  445 TDVAWSPTRPAVFATVDGDGNLDIWDLLQDD  475 (555)
T ss_pred             eeeEEcCcCceEEEEEcCCCceehhhhhccc
Confidence            9999998654 56888889999999997543

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.50  E-value=4e-14  Score=112.75  Aligned_cols=190  Identities=16%  Similarity=0.223  Sum_probs=140.0

Q ss_pred             CceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCC
Q 021291           19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL   98 (314)
Q Consensus        19 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~   98 (314)
                      ..|.++.|-.+.+++|++- ..-+.||| ..|..+..++.+   ..|..+.|.|  ..-+|++++..|.++.-|+.+|++
T Consensus       171 Etv~Dv~~LHneq~~AVAQ-K~y~yvYD-~~GtElHClk~~---~~v~rLeFLP--yHfLL~~~~~~G~L~Y~DVS~Gkl  243 (545)
T KOG1272|consen  171 ETVRDVTFLHNEQFFAVAQ-KKYVYVYD-NNGTELHCLKRH---IRVARLEFLP--YHFLLVAASEAGFLKYQDVSTGKL  243 (545)
T ss_pred             hhhhhhhhhcchHHHHhhh-hceEEEec-CCCcEEeehhhc---Cchhhhcccc--hhheeeecccCCceEEEeechhhh
Confidence            4567777777777777665 45799999 668888888877   5589999999  767788999999999999999987


Q ss_pred             CCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEe
Q 021291           99 SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWD  178 (314)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd  178 (314)
                      +.    .+.........                                      ++-+|-+.  ++-.|...|+|.+|.
T Consensus       244 Va----~~~t~~G~~~v--------------------------------------m~qNP~Na--Vih~GhsnGtVSlWS  279 (545)
T KOG1272|consen  244 VA----SIRTGAGRTDV--------------------------------------MKQNPYNA--VIHLGHSNGTVSLWS  279 (545)
T ss_pred             hH----HHHccCCccch--------------------------------------hhcCCccc--eEEEcCCCceEEecC
Confidence            65    22222221111                                      22334433  334577789999999


Q ss_pred             cCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEE
Q 021291          179 LNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCL  258 (314)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~  258 (314)
                      ....+++..+.        .|    .+.+.+++ +.|.   |+ |+++.+.|..++|||+++.. .+.++.. .-+...+
T Consensus       280 P~skePLvKiL--------cH----~g~V~siA-v~~~---G~-YMaTtG~Dr~~kIWDlR~~~-ql~t~~t-p~~a~~l  340 (545)
T KOG1272|consen  280 PNSKEPLVKIL--------CH----RGPVSSIA-VDRG---GR-YMATTGLDRKVKIWDLRNFY-QLHTYRT-PHPASNL  340 (545)
T ss_pred             CCCcchHHHHH--------hc----CCCcceEE-ECCC---Cc-EEeecccccceeEeeecccc-ccceeec-CCCcccc
Confidence            99999888777        56    55777787 9987   66 99999999999999999844 3334333 4567889


Q ss_pred             EEeCCCCeEEEecCCCcEEEEe
Q 021291          259 SIDESCNGGISGGADQKIVLYN  280 (314)
Q Consensus       259 ~~~~~~~~l~s~s~dg~i~iw~  280 (314)
                      ++|..|.  +..|....|.||.
T Consensus       341 s~Sqkgl--LA~~~G~~v~iw~  360 (545)
T KOG1272|consen  341 SLSQKGL--LALSYGDHVQIWK  360 (545)
T ss_pred             ccccccc--eeeecCCeeeeeh
Confidence            9998875  3444555799995

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.50  E-value=1.2e-12  Score=103.21  Aligned_cols=181  Identities=16%  Similarity=0.219  Sum_probs=117.7

Q ss_pred             EEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceee
Q 021291           66 VSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVD  145 (314)
Q Consensus        66 ~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (314)
                      .+++|++  ++..+++++.||++|+|+..+...+.    ....+.....                               
T Consensus       148 k~vaf~~--~gs~latgg~dg~lRv~~~Ps~~t~l----~e~~~~~eV~-------------------------------  190 (398)
T KOG0771|consen  148 KVVAFNG--DGSKLATGGTDGTLRVWEWPSMLTIL----EEIAHHAEVK-------------------------------  190 (398)
T ss_pred             eEEEEcC--CCCEeeeccccceEEEEecCcchhhh----hhHhhcCccc-------------------------------
Confidence            6889999  99999999999999999976654322    1111111000                               


Q ss_pred             ecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEE
Q 021291          146 TDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL  225 (314)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~  225 (314)
                             ++.|+|||+.++ ..|. | ..+||+.+++..+.....        ..  ..-..-.+ .|+.++.....+++
T Consensus       191 -------DL~FS~dgk~la-sig~-d-~~~VW~~~~g~~~a~~t~--------~~--k~~~~~~c-RF~~d~~~~~l~la  249 (398)
T KOG0771|consen  191 -------DLDFSPDGKFLA-SIGA-D-SARVWSVNTGAALARKTP--------FS--KDEMFSSC-RFSVDNAQETLRLA  249 (398)
T ss_pred             -------cceeCCCCcEEE-EecC-C-ceEEEEeccCchhhhcCC--------cc--cchhhhhc-eecccCCCceEEEE
Confidence                   067999997544 3444 5 899999999977666552        10  11122333 38877432222333


Q ss_pred             E-eecCCcEEEEEccCCCC----ceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe--------eee
Q 021291          226 A-GYEDGSILVWDIRNPGI----PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF--------GIG  292 (314)
Q Consensus       226 ~-g~~dg~i~vwd~~~~~~----~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~--------~~~  292 (314)
                      + -..-+.|+.||+.....    +..+...-...|++++.+.+|++++.|+.||.|-|++..+-+.++.        +.+
T Consensus       250 a~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~  329 (398)
T KOG0771|consen  250 ASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTG  329 (398)
T ss_pred             EecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeee
Confidence            3 33345677777653211    2222222345799999999999999999999999999998887764        566


Q ss_pred             eeecCCCceece
Q 021291          293 FVCDQEGNKFGT  304 (314)
Q Consensus       293 ~~~~~~~~~~~~  304 (314)
                      +.+.|+....++
T Consensus       330 ltF~Pdsr~~~s  341 (398)
T KOG0771|consen  330 LTFSPDSRYLAS  341 (398)
T ss_pred             EEEcCCcCcccc
Confidence            677777765544

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.49  E-value=2e-11  Score=93.12  Aligned_cols=218  Identities=13%  Similarity=0.196  Sum_probs=137.1

Q ss_pred             ceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEE-EeecC------CeEEEEe
Q 021291           20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRD------GTVKCWD   92 (314)
Q Consensus        20 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d------g~v~iwd   92 (314)
                      ....++|+.|...++.|..+| .+||+.+.-+.....+.+...-.+..|-|-.    ++|+ .|+.+      ..|.|||
T Consensus         7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~----N~laLVGGg~~pky~pNkviIWD   81 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRS----NYLALVGGGSRPKYPPNKVIIWD   81 (346)
T ss_pred             ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhh----ceEEEecCCCCCCCCCceEEEEe
Confidence            344599999999999998888 8999988644433332222212244455543    5555 34333      4799999


Q ss_pred             CCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcC
Q 021291           93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS  172 (314)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~  172 (314)
                      =....++.    ++.-......                                       +.+.+  ++++++.   ++
T Consensus        82 D~k~~~i~----el~f~~~I~~---------------------------------------V~l~r--~riVvvl---~~  113 (346)
T KOG2111|consen   82 DLKERCII----ELSFNSEIKA---------------------------------------VKLRR--DRIVVVL---EN  113 (346)
T ss_pred             cccCcEEE----EEEeccceee---------------------------------------EEEcC--CeEEEEe---cC
Confidence            44443322    2221111000                                       11223  4455433   57


Q ss_pred             eEEEEecC-CCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCC-ceEeeec
Q 021291          173 EVEIWDLN-TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI-PLTAMKV  250 (314)
Q Consensus       173 ~i~vwd~~-~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~-~~~~~~~  250 (314)
                      .|+||... +.+.+..+..        ... .++.    ++..|... ...+..-|..-|.|.|-|+..... +-..+.+
T Consensus       114 ~I~VytF~~n~k~l~~~et--------~~N-PkGl----C~~~~~~~-k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~A  179 (346)
T KOG2111|consen  114 KIYVYTFPDNPKLLHVIET--------RSN-PKGL----CSLCPTSN-KSLLAFPGFKTGQVQIVDLASTKPNAPSIINA  179 (346)
T ss_pred             eEEEEEcCCChhheeeeec--------ccC-CCce----EeecCCCC-ceEEEcCCCccceEEEEEhhhcCcCCceEEEc
Confidence            89999987 5566666652        111 2232    23666532 332333466779999999986222 2477889


Q ss_pred             CCcceEEEEEeCCCCeEEEecCCCc-EEEEecCCCeeeEe---------eeeeeecCCCceece
Q 021291          251 HLEPVLCLSIDESCNGGISGGADQK-IVLYNLDHSTYVLF---------GIGFVCDQEGNKFGT  304 (314)
Q Consensus       251 h~~~v~~~~~~~~~~~l~s~s~dg~-i~iw~~~~~~~~~~---------~~~~~~~~~~~~~~~  304 (314)
                      |.+.|.+++.+.+|..+||+|..|+ |||||..+++.++.         +..++++|+...++.
T Consensus       180 H~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~Lav  243 (346)
T KOG2111|consen  180 HDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAV  243 (346)
T ss_pred             ccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEE
Confidence            9999999999999999999999996 89999999998874         344566677765543

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.48  E-value=1.2e-11  Score=95.97  Aligned_cols=201  Identities=14%  Similarity=0.182  Sum_probs=126.4

Q ss_pred             CCceeEEEEcc-CCCEEEEecCCCeEEEEeCCCC----e--------EEEEEeccCCcccEEEEEEcccCCCCeEEEeec
Q 021291           18 RASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQH----R--------TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (314)
Q Consensus        18 ~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~----~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (314)
                      ...|+|++|-| .+..|+.|+..| |.+|.....    +        +...++... ..+|++|.|.+  ||..+++++.
T Consensus       140 QrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pg-h~pVtsmqwn~--dgt~l~tAS~  215 (445)
T KOG2139|consen  140 QRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPG-HNPVTSMQWNE--DGTILVTASF  215 (445)
T ss_pred             hcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCC-CceeeEEEEcC--CCCEEeeccc
Confidence            56799999999 567888888876 899986531    1        112222222 26799999999  9999998876


Q ss_pred             -CCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCce
Q 021291           85 -DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY  163 (314)
Q Consensus        85 -dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (314)
                       |..|.|||+.++..+.  +..... .....                                       +.|||||..+
T Consensus       216 gsssi~iWdpdtg~~~p--L~~~gl-gg~sl---------------------------------------LkwSPdgd~l  253 (445)
T KOG2139|consen  216 GSSSIMIWDPDTGQKIP--LIPKGL-GGFSL---------------------------------------LKWSPDGDVL  253 (445)
T ss_pred             CcceEEEEcCCCCCccc--ccccCC-Cceee---------------------------------------EEEcCCCCEE
Confidence             6689999999987643  221111 11101                                       5699999988


Q ss_pred             EEEeecCcCeEEEEecC-CCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCC
Q 021291          164 MAVAGEQLSEVEIWDLN-TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG  242 (314)
Q Consensus       164 ~~~~g~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~  242 (314)
                      ++++  .|+..++|+.. +.....-..             ..+.+.... |+|+   |+++|++.+..-  ++|.+.-.+
T Consensus       254 faAt--~davfrlw~e~q~wt~erw~l-------------gsgrvqtac-Wspc---GsfLLf~~sgsp--~lysl~f~~  312 (445)
T KOG2139|consen  254 FAAT--CDAVFRLWQENQSWTKERWIL-------------GSGRVQTAC-WSPC---GSFLLFACSGSP--RLYSLTFDG  312 (445)
T ss_pred             EEec--ccceeeeehhcccceecceec-------------cCCceeeee-ecCC---CCEEEEEEcCCc--eEEEEeecC
Confidence            8644  47999999544 333322222             123455554 9998   665666666544  444443212


Q ss_pred             Cc--------------eEeee-----c----CCcceEEEEEeCCCCeEEEecCCC--------cEEEEecCCCe
Q 021291          243 IP--------------LTAMK-----V----HLEPVLCLSIDESCNGGISGGADQ--------KIVLYNLDHST  285 (314)
Q Consensus       243 ~~--------------~~~~~-----~----h~~~v~~~~~~~~~~~l~s~s~dg--------~i~iw~~~~~~  285 (314)
                      ++              +..+.     .    -.+++.+++|+|.|.+|++.=..+        .|.+||.+..-
T Consensus       313 ~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp  386 (445)
T KOG2139|consen  313 EDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSP  386 (445)
T ss_pred             CCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccC
Confidence            11              01111     1    135788999999999998764332        36667766543

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.48  E-value=8.1e-13  Score=98.13  Aligned_cols=159  Identities=18%  Similarity=0.277  Sum_probs=113.2

Q ss_pred             CCCceeEEEEcc-CCC--EEEEecCCCeEEEEeCCCCeEEE----------EEeccCCcccEEEEEEcccCCCCeEEEee
Q 021291           17 HRASVTDVCFHQ-TKP--ILFAGTTGGELRIWDTVQHRTVS----------SSWVHSAAHGIVSVATGPSIGLNKVISQG   83 (314)
Q Consensus        17 h~~~v~~~~~~~-~~~--~l~s~~~dg~v~iwd~~~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (314)
                      -.+.+.|..+.. ++.  +|+.|-.+|.|.+||+.++..+.          ....|.  .+|.++.|.+  .-+.=++++
T Consensus       149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~--qpvlsldyas--~~~rGisgg  224 (323)
T KOG0322|consen  149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHK--QPVLSLDYAS--SCDRGISGG  224 (323)
T ss_pred             ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhcc--Ccceeeeech--hhcCCcCCC
Confidence            346677777544 333  56678889999999999874332          333566  4599999988  556667888


Q ss_pred             cCCeEEEEeCCCC--CCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCC
Q 021291           84 RDGTVKCWDIENG--GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGP  161 (314)
Q Consensus        84 ~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (314)
                      .+..+..|.++..  .+......+++.                                        .+..++.+-||++
T Consensus       225 a~dkl~~~Sl~~s~gslq~~~e~~lkn----------------------------------------pGv~gvrIRpD~K  264 (323)
T KOG0322|consen  225 ADDKLVMYSLNHSTGSLQIRKEITLKN----------------------------------------PGVSGVRIRPDGK  264 (323)
T ss_pred             ccccceeeeeccccCcccccceEEecC----------------------------------------CCccceEEccCCc
Confidence            8888999988643  221111111111                                        1112255678875


Q ss_pred             ceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEc
Q 021291          162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI  238 (314)
Q Consensus       162 ~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~  238 (314)
                       ++ ++++.|+.|+||..++..++..++        -|    .+.+.+++ |+|+.+    ++++++.|+.|.+|++
T Consensus       265 -Il-ATAGWD~RiRVyswrtl~pLAVLk--------yH----sagvn~vA-fspd~~----lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  265 -IL-ATAGWDHRIRVYSWRTLNPLAVLK--------YH----SAGVNAVA-FSPDCE----LMAAASKDARISLWKL  322 (323)
T ss_pred             -EE-eecccCCcEEEEEeccCCchhhhh--------hh----hcceeEEE-eCCCCc----hhhhccCCceEEeeec
Confidence             44 477889999999999999999998        56    45788898 999843    8999999999999986

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.48  E-value=1.9e-11  Score=94.96  Aligned_cols=197  Identities=15%  Similarity=0.128  Sum_probs=127.1

Q ss_pred             CCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCC
Q 021291           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG   97 (314)
Q Consensus        18 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~   97 (314)
                      +..+..++|++.-..+|++..|-.|++||-.. ++...++.... ..|+|++|-|. .+..|+.|+.. -|.+|.....-
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQ-rnvtclawRPl-saselavgCr~-gIciW~~s~tl  173 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQ-RNVTCLAWRPL-SASELAVGCRA-GICIWSDSRTL  173 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhh-cceeEEEeccC-Ccceeeeeecc-eeEEEEcCccc
Confidence            34577899999766789999999999999654 66666654332 56999999994 34567777765 58999876432


Q ss_pred             CCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC---ceeccCCCceEEEeecCcCeE
Q 021291           98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK---DDVPAEGPKYMAVAGEQLSEV  174 (314)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~d~~i  174 (314)
                      ....+.   .......                             ......++|..   +.|.+||..++ .++-.|..|
T Consensus       174 n~~r~~---~~~s~~~-----------------------------~qvl~~pgh~pVtsmqwn~dgt~l~-tAS~gsssi  220 (445)
T KOG2139|consen  174 NANRNI---RMMSTHH-----------------------------LQVLQDPGHNPVTSMQWNEDGTILV-TASFGSSSI  220 (445)
T ss_pred             cccccc---ccccccc-----------------------------hhheeCCCCceeeEEEEcCCCCEEe-ecccCcceE
Confidence            111100   0000000                             00011122222   77999987655 345557899


Q ss_pred             EEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcc
Q 021291          175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP  254 (314)
Q Consensus       175 ~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~  254 (314)
                      .|||..++..+.-...            ..+.+.-+. |+||   |. +|+++.-|+..++|+.........-..+ .+.
T Consensus       221 ~iWdpdtg~~~pL~~~------------glgg~slLk-wSPd---gd-~lfaAt~davfrlw~e~q~wt~erw~lg-sgr  282 (445)
T KOG2139|consen  221 MIWDPDTGQKIPLIPK------------GLGGFSLLK-WSPD---GD-VLFAATCDAVFRLWQENQSWTKERWILG-SGR  282 (445)
T ss_pred             EEEcCCCCCccccccc------------CCCceeeEE-EcCC---CC-EEEEecccceeeeehhcccceecceecc-CCc
Confidence            9999998876543321            123444555 9999   55 8999999999999966542333333333 459


Q ss_pred             eEEEEEeCCCCeEEE
Q 021291          255 VLCLSIDESCNGGIS  269 (314)
Q Consensus       255 v~~~~~~~~~~~l~s  269 (314)
                      |....|+|+|.+|.-
T Consensus       283 vqtacWspcGsfLLf  297 (445)
T KOG2139|consen  283 VQTACWSPCGSFLLF  297 (445)
T ss_pred             eeeeeecCCCCEEEE
Confidence            999999999987643

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=2.1e-11  Score=103.34  Aligned_cols=198  Identities=14%  Similarity=0.080  Sum_probs=116.4

Q ss_pred             CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC---CeEEEEeCCCCCCCCCCeeeeecceeeEEEe
Q 021291           40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD---GTVKCWDIENGGLSSNPSLTIKTNSYHFCKL  116 (314)
Q Consensus        40 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  116 (314)
                      ..|.++|.+ +.....+..+.  ..+.+.+|+|  |++.|+..+.+   ..|.+||+.+++...  +......  ...  
T Consensus       176 ~~L~~~D~d-G~~~~~l~~~~--~~v~~p~wSP--DG~~la~~s~~~~~~~I~~~dl~~g~~~~--l~~~~g~--~~~--  244 (427)
T PRK02889        176 YQLQISDAD-GQNAQSALSSP--EPIISPAWSP--DGTKLAYVSFESKKPVVYVHDLATGRRRV--VANFKGS--NSA--  244 (427)
T ss_pred             cEEEEECCC-CCCceEeccCC--CCcccceEcC--CCCEEEEEEccCCCcEEEEEECCCCCEEE--eecCCCC--ccc--
Confidence            468888864 44444454555  4489999999  99998876643   359999998875321  1111100  000  


Q ss_pred             eeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEE--ecCCCceeeeecccccC
Q 021291          117 SLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIW--DLNTAERCTRLHQNSCG  194 (314)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vw--d~~~~~~~~~~~~~~~~  194 (314)
                                                           .+|+|+|+.+++ +.+.++...||  |+..+. ...+.     
T Consensus       245 -------------------------------------~~~SPDG~~la~-~~~~~g~~~Iy~~d~~~~~-~~~lt-----  280 (427)
T PRK02889        245 -------------------------------------PAWSPDGRTLAV-ALSRDGNSQIYTVNADGSG-LRRLT-----  280 (427)
T ss_pred             -------------------------------------eEECCCCCEEEE-EEccCCCceEEEEECCCCC-cEECC-----
Confidence                                                 469999987765 44456665555  454443 33343     


Q ss_pred             CCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCC
Q 021291          195 GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQ  274 (314)
Q Consensus       195 ~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg  274 (314)
                         .+    .+...... |+||   |+.+++++..+|...+|.+...+.....+..+........|+|+|++|+..+.++
T Consensus       281 ---~~----~~~~~~~~-wSpD---G~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~  349 (427)
T PRK02889        281 ---QS----SGIDTEPF-FSPD---GRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVG  349 (427)
T ss_pred             ---CC----CCCCcCeE-EcCC---CCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccC
Confidence               22    11233455 9998   6534444444566677765432223333332333445678999999998776654


Q ss_pred             ---cEEEEecCCCeeeEee-----eeeeecCCCceec
Q 021291          275 ---KIVLYNLDHSTYVLFG-----IGFVCDQEGNKFG  303 (314)
Q Consensus       275 ---~i~iw~~~~~~~~~~~-----~~~~~~~~~~~~~  303 (314)
                         .|.+||+.+++.....     ...+++|+|..+.
T Consensus       350 g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~  386 (427)
T PRK02889        350 GAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRYIL  386 (427)
T ss_pred             CcEEEEEEECCCCCeEEccCCCCccCceECCCCCEEE
Confidence               5999999877644321     2234566766543

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=6.5e-11  Score=100.32  Aligned_cols=196  Identities=13%  Similarity=0.069  Sum_probs=118.5

Q ss_pred             CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeec---CCeEEEEeCCCCCCCCCCeeeeecceeeEEEe
Q 021291           40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR---DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKL  116 (314)
Q Consensus        40 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  116 (314)
                      ..|.+||.+..... .+..+.  ..+...+|+|  ||+.|+..+.   +..|.+||+.+++...  +........     
T Consensus       179 ~~l~~~d~dg~~~~-~lt~~~--~~~~~p~wSP--DG~~la~~s~~~g~~~i~i~dl~~G~~~~--l~~~~~~~~-----  246 (429)
T PRK03629        179 YELRVSDYDGYNQF-VVHRSP--QPLMSPAWSP--DGSKLAYVTFESGRSALVIQTLANGAVRQ--VASFPRHNG-----  246 (429)
T ss_pred             eeEEEEcCCCCCCE-EeecCC--CceeeeEEcC--CCCEEEEEEecCCCcEEEEEECCCCCeEE--ccCCCCCcC-----
Confidence            37999998754433 333344  4599999999  9998886543   4579999998775321  111111000     


Q ss_pred             eeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcC--eEEEEecCCCceeeeecccccC
Q 021291          117 SLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS--EVEIWDLNTAERCTRLHQNSCG  194 (314)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~--~i~vwd~~~~~~~~~~~~~~~~  194 (314)
                                                          ..+|+|||+.++++ .+.++  .|++||+.+++......     
T Consensus       247 ------------------------------------~~~~SPDG~~La~~-~~~~g~~~I~~~d~~tg~~~~lt~-----  284 (429)
T PRK03629        247 ------------------------------------APAFSPDGSKLAFA-LSKTGSLNLYVMDLASGQIRQVTD-----  284 (429)
T ss_pred             ------------------------------------CeEECCCCCEEEEE-EcCCCCcEEEEEECCCCCEEEccC-----
Confidence                                                04599999887654 33234  59999998876543222     


Q ss_pred             CCCCcCCCCCceeeeEEEecCCCCCCceEEEEee-cCCcEEEE--EccCCCCceEeeecCCcceEEEEEeCCCCeEEEec
Q 021291          195 GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-EDGSILVW--DIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG  271 (314)
Q Consensus       195 ~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~-~dg~i~vw--d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s  271 (314)
                          +    ........ |+|+   |+ .|+..+ .++...||  |+.. + ....+..+........|+|+|++|+..+
T Consensus       285 ----~----~~~~~~~~-wSPD---G~-~I~f~s~~~g~~~Iy~~d~~~-g-~~~~lt~~~~~~~~~~~SpDG~~Ia~~~  349 (429)
T PRK03629        285 ----G----RSNNTEPT-WFPD---SQ-NLAYTSDQAGRPQVYKVNING-G-APQRITWEGSQNQDADVSSDGKFMVMVS  349 (429)
T ss_pred             ----C----CCCcCceE-ECCC---CC-EEEEEeCCCCCceEEEEECCC-C-CeEEeecCCCCccCEEECCCCCEEEEEE
Confidence                1    11234455 9998   55 454444 44544555  5554 3 3344544445566789999999987765


Q ss_pred             CC---CcEEEEecCCCeeeEe-----eeeeeecCCCceece
Q 021291          272 AD---QKIVLYNLDHSTYVLF-----GIGFVCDQEGNKFGT  304 (314)
Q Consensus       272 ~d---g~i~iw~~~~~~~~~~-----~~~~~~~~~~~~~~~  304 (314)
                      .+   ..|.+||+++++....     ....+++|+|..+..
T Consensus       350 ~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~  390 (429)
T PRK03629        350 SNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIY  390 (429)
T ss_pred             ccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEE
Confidence            43   3588899987764322     112346677765443

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.45  E-value=1e-09  Score=90.53  Aligned_cols=255  Identities=11%  Similarity=0.094  Sum_probs=149.1

Q ss_pred             CceeEEEEccCCCEEEEecC----CCeEEEEeCCCC--e--EEEEEeccCCcccEEEEEEcccCCCCeEEEeec-CCeEE
Q 021291           19 ASVTDVCFHQTKPILFAGTT----GGELRIWDTVQH--R--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-DGTVK   89 (314)
Q Consensus        19 ~~v~~~~~~~~~~~l~s~~~----dg~v~iwd~~~~--~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~v~   89 (314)
                      .....++++|++++|++...    +|.|..|++...  +  .+.......  .....++++|  ++++|+++.. +|+|.
T Consensus        37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g--~~p~~i~~~~--~g~~l~vany~~g~v~  112 (345)
T PF10282_consen   37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGG--SSPCHIAVDP--DGRFLYVANYGGGSVS  112 (345)
T ss_dssp             SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESS--SCEEEEEECT--TSSEEEEEETTTTEEE
T ss_pred             CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCC--CCcEEEEEec--CCCEEEEEEccCCeEE
Confidence            34466889999999988766    579999988764  3  333333222  3356899999  9999888864 89999


Q ss_pred             EEeCCCCCCCCCCeeee------------ecceeeEEEeeeeeccccccccCCCCcceeeccCCc--e---eeecCCCCC
Q 021291           90 CWDIENGGLSSNPSLTI------------KTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE--T---VDTDSLCDS  152 (314)
Q Consensus        90 iwd~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~  152 (314)
                      ++++.....+.......            .....+...+++.+...............+++....  .   .........
T Consensus       113 v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~  192 (345)
T PF10282_consen  113 VFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGS  192 (345)
T ss_dssp             EEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTS
T ss_pred             EEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCC
Confidence            99998742221111011            011223344444443333333333445555554443  1   111222222


Q ss_pred             C---ceeccCCCceEEEeecCcCeEEEEecC--CCc--eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEE
Q 021291          153 K---DDVPAEGPKYMAVAGEQLSEVEIWDLN--TAE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL  225 (314)
Q Consensus       153 ~---~~~~~~~~~~~~~~g~~d~~i~vwd~~--~~~--~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~  225 (314)
                      .   ++|+|+++++++ ....++.|.++++.  ++.  .+..+..   .+. +.  ........+. ++|+   |+++++
T Consensus       193 GPRh~~f~pdg~~~Yv-~~e~s~~v~v~~~~~~~g~~~~~~~~~~---~~~-~~--~~~~~~~~i~-ispd---g~~lyv  261 (345)
T PF10282_consen  193 GPRHLAFSPDGKYAYV-VNELSNTVSVFDYDPSDGSLTEIQTIST---LPE-GF--TGENAPAEIA-ISPD---GRFLYV  261 (345)
T ss_dssp             SEEEEEE-TTSSEEEE-EETTTTEEEEEEEETTTTEEEEEEEEES---CET-TS--CSSSSEEEEE-E-TT---SSEEEE
T ss_pred             CCcEEEEcCCcCEEEE-ecCCCCcEEEEeecccCCceeEEEEeee---ccc-cc--cccCCceeEE-EecC---CCEEEE
Confidence            2   999999988776 46678999999988  332  2222221   000 11  1112466676 9998   664556


Q ss_pred             EeecCCcEEEEEccCC-CC--ceEeeecCCcceEEEEEeCCCCeEEEec-CCCcEEEEecC--CCeeeE
Q 021291          226 AGYEDGSILVWDIRNP-GI--PLTAMKVHLEPVLCLSIDESCNGGISGG-ADQKIVLYNLD--HSTYVL  288 (314)
Q Consensus       226 ~g~~dg~i~vwd~~~~-~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~s-~dg~i~iw~~~--~~~~~~  288 (314)
                      +...++.|.+|+++.. +.  .+..+.........++++|+|++|+++. .++.|.+|+++  +|....
T Consensus       262 snr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~  330 (345)
T PF10282_consen  262 SNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTP  330 (345)
T ss_dssp             EECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred             EeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEE
Confidence            6667788999999532 22  2333443345579999999999987776 56789999774  555443

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.45  E-value=5.7e-11  Score=101.16  Aligned_cols=196  Identities=14%  Similarity=0.055  Sum_probs=120.9

Q ss_pred             CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeec---CCeEEEEeCCCCCCCCCCeeeeecceeeEEEe
Q 021291           40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR---DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKL  116 (314)
Q Consensus        40 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  116 (314)
                      ..|.++|.+. .....+..+.  ..+.+.+|+|  ||+.|+..+.   +..|.+||+.+++...     +.......  .
T Consensus       182 ~~l~~~d~dg-~~~~~lt~~~--~~v~~p~wSp--DG~~lay~s~~~g~~~i~~~dl~~g~~~~-----l~~~~g~~--~  249 (435)
T PRK05137        182 KRLAIMDQDG-ANVRYLTDGS--SLVLTPRFSP--NRQEITYMSYANGRPRVYLLDLETGQREL-----VGNFPGMT--F  249 (435)
T ss_pred             eEEEEECCCC-CCcEEEecCC--CCeEeeEECC--CCCEEEEEEecCCCCEEEEEECCCCcEEE-----eecCCCcc--c
Confidence            4789999754 4444555565  4499999999  9998887664   4689999998875311     11100000  0


Q ss_pred             eeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcC--eEEEEecCCCceeeeecccccC
Q 021291          117 SLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS--EVEIWDLNTAERCTRLHQNSCG  194 (314)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~--~i~vwd~~~~~~~~~~~~~~~~  194 (314)
                                                          ..+|+|+|+.++++ .+.++  .|++||+.+++.. .+.     
T Consensus       250 ------------------------------------~~~~SPDG~~la~~-~~~~g~~~Iy~~d~~~~~~~-~Lt-----  286 (435)
T PRK05137        250 ------------------------------------APRFSPDGRKVVMS-LSQGGNTDIYTMDLRSGTTT-RLT-----  286 (435)
T ss_pred             ------------------------------------CcEECCCCCEEEEE-EecCCCceEEEEECCCCceE-Ecc-----
Confidence                                                04699999887653 44344  4788898877643 343     


Q ss_pred             CCCCcCCCCCceeeeEEEecCCCCCCceEEEEee-cCC--cEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEec
Q 021291          195 GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-EDG--SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG  271 (314)
Q Consensus       195 ~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~-~dg--~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s  271 (314)
                         .+.    ....... |+||   |+ .|+..+ .+|  .|+++|+.. + ....+..+...+....|+|+|++|+..+
T Consensus       287 ---~~~----~~~~~~~-~spD---G~-~i~f~s~~~g~~~Iy~~d~~g-~-~~~~lt~~~~~~~~~~~SpdG~~ia~~~  352 (435)
T PRK05137        287 ---DSP----AIDTSPS-YSPD---GS-QIVFESDRSGSPQLYVMNADG-S-NPRRISFGGGRYSTPVWSPRGDLIAFTK  352 (435)
T ss_pred             ---CCC----CccCcee-EcCC---CC-EEEEEECCCCCCeEEEEECCC-C-CeEEeecCCCcccCeEECCCCCEEEEEE
Confidence               221    2233444 9998   55 454443 343  588888764 3 3444544455677789999999987765


Q ss_pred             CC---CcEEEEecCCCeeeEe-----eeeeeecCCCceece
Q 021291          272 AD---QKIVLYNLDHSTYVLF-----GIGFVCDQEGNKFGT  304 (314)
Q Consensus       272 ~d---g~i~iw~~~~~~~~~~-----~~~~~~~~~~~~~~~  304 (314)
                      .+   ..|.+||+..+.....     ....+++|+|..+.-
T Consensus       353 ~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~~i~~  393 (435)
T PRK05137        353 QGGGQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGRVIMF  393 (435)
T ss_pred             cCCCceEEEEEECCCCceEeccCCCCCCCCeECCCCCEEEE
Confidence            43   3588888765543221     123456677765543

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.45  E-value=7e-13  Score=107.67  Aligned_cols=86  Identities=21%  Similarity=0.293  Sum_probs=73.6

Q ss_pred             eEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEE
Q 021291           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC   90 (314)
Q Consensus        11 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~i   90 (314)
                      +..+.--++.|+..+|+|||++||+.+.||.+||||..+.+.+..++..-  +...|++|+|  ||+++++|++|.-|.|
T Consensus       283 v~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYF--GGLLCvcWSP--DGKyIvtGGEDDLVtV  358 (636)
T KOG2394|consen  283 VARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYF--GGLLCVCWSP--DGKYIVTGGEDDLVTV  358 (636)
T ss_pred             cceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhc--cceEEEEEcC--CccEEEecCCcceEEE
Confidence            33333345689999999999999999999999999999988887776665  4499999999  9999999999999999


Q ss_pred             EeCCCCCCCC
Q 021291           91 WDIENGGLSS  100 (314)
Q Consensus        91 wd~~~~~~~~  100 (314)
                      |.+...+.+.
T Consensus       359 wSf~erRVVA  368 (636)
T KOG2394|consen  359 WSFEERRVVA  368 (636)
T ss_pred             EEeccceEEE
Confidence            9999887543

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.44  E-value=1.3e-10  Score=99.16  Aligned_cols=225  Identities=11%  Similarity=0.024  Sum_probs=132.1

Q ss_pred             ceEEecCCCCceeEEEEccCCCEEEEecCC---CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEE-EeecC
Q 021291           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTG---GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRD   85 (314)
Q Consensus        10 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d   85 (314)
                      ..+.+..+...+...+|+|||+.|+..+.+   ..|.+||+.+++... +....  ..+....|+|  +|+.|+ +.+.+
T Consensus       190 ~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~--g~~~~~~~Sp--DG~~la~~~~~~  264 (430)
T PRK00178        190 RAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFE--GLNGAPAWSP--DGSKLAFVLSKD  264 (430)
T ss_pred             CceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCC--CCcCCeEECC--CCCEEEEEEccC
Confidence            345555677889999999999988776543   369999998876543 22222  2256789999  988877 45555


Q ss_pred             C--eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCce
Q 021291           86 G--TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY  163 (314)
Q Consensus        86 g--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (314)
                      |  .|.+||+.+++...     +.......  .                                    ...|+|+|+.+
T Consensus       265 g~~~Iy~~d~~~~~~~~-----lt~~~~~~--~------------------------------------~~~~spDg~~i  301 (430)
T PRK00178        265 GNPEIYVMDLASRQLSR-----VTNHPAID--T------------------------------------EPFWGKDGRTL  301 (430)
T ss_pred             CCceEEEEECCCCCeEE-----cccCCCCc--C------------------------------------CeEECCCCCEE
Confidence            5  58888988765321     11100000  0                                    04589999887


Q ss_pred             EEEeecCc--CeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEee-cCC--cEEEEEc
Q 021291          164 MAVAGEQL--SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-EDG--SILVWDI  238 (314)
Q Consensus       164 ~~~~g~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~-~dg--~i~vwd~  238 (314)
                      +..+ ..+  ..|+++|+.+++.......       +.      ...... |+|+   |+ .++... .++  .|.+||+
T Consensus       302 ~f~s-~~~g~~~iy~~d~~~g~~~~lt~~-------~~------~~~~~~-~Spd---g~-~i~~~~~~~~~~~l~~~dl  362 (430)
T PRK00178        302 YFTS-DRGGKPQIYKVNVNGGRAERVTFV-------GN------YNARPR-LSAD---GK-TLVMVHRQDGNFHVAAQDL  362 (430)
T ss_pred             EEEE-CCCCCceEEEEECCCCCEEEeecC-------CC------CccceE-ECCC---CC-EEEEEEccCCceEEEEEEC
Confidence            6643 333  3577888877764322110       11      112233 9998   55 444443 333  5888898


Q ss_pred             cCCCCceEeeecCCcceEEEEEeCCCCeEEEecCC---CcEEEEecCCCeeeEeeeeeeecCCCceeceeeccc
Q 021291          239 RNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD---QKIVLYNLDHSTYVLFGIGFVCDQEGNKFGTTWHIR  309 (314)
Q Consensus       239 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  309 (314)
                      .+ +.. ..+.. ........|+|+|+.|+..+.+   ..|.+++++.... ..+.    .+.|......|.+.
T Consensus       363 ~t-g~~-~~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~-~~l~----~~~g~~~~p~ws~~  428 (430)
T PRK00178        363 QR-GSV-RILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVR-LPLP----TAQGEVREPSWSPY  428 (430)
T ss_pred             CC-CCE-EEccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce-EECc----CCCCCcCCCccCCC
Confidence            86 433 33332 2222356899999988766543   3466777754332 2211    24555556667653

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.44  E-value=9.6e-11  Score=99.65  Aligned_cols=204  Identities=14%  Similarity=0.080  Sum_probs=125.6

Q ss_pred             CceEEecCCCCceeEEEEccCCCEEEEecCC---CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEE-Eeec
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTG---GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGR   84 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~   84 (314)
                      ...+.+..+...+...+|+|||++|+.++.+   ..|++||+.+++.... ..+.  ..+.+++|+|  +++.|+ +.+.
T Consensus       180 ~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~--~~~~~~~~sp--Dg~~l~~~~~~  254 (417)
T TIGR02800       180 ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFP--GMNGAPAFSP--DGSKLAVSLSK  254 (417)
T ss_pred             CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCC--CCccceEECC--CCCEEEEEECC
Confidence            3345555677789999999999999877653   4799999988765433 2333  3367899999  988776 4444


Q ss_pred             CC--eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCc
Q 021291           85 DG--TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPK  162 (314)
Q Consensus        85 dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (314)
                      ++  .|.+||+.++....     +.......  .                                    ...|+|+|+.
T Consensus       255 ~~~~~i~~~d~~~~~~~~-----l~~~~~~~--~------------------------------------~~~~s~dg~~  291 (417)
T TIGR02800       255 DGNPDIYVMDLDGKQLTR-----LTNGPGID--T------------------------------------EPSWSPDGKS  291 (417)
T ss_pred             CCCccEEEEECCCCCEEE-----CCCCCCCC--C------------------------------------CEEECCCCCE
Confidence            44  58888888764311     11100000  0                                    0358899987


Q ss_pred             eEEEeecCcC--eEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCC---cEEEEE
Q 021291          163 YMAVAGEQLS--EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG---SILVWD  237 (314)
Q Consensus       163 ~~~~~g~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg---~i~vwd  237 (314)
                      +++++ ..++  .|+++|+.+++.. .+.        .+    ........ |+|+   |+ +++.++.++   .|.+||
T Consensus       292 l~~~s-~~~g~~~iy~~d~~~~~~~-~l~--------~~----~~~~~~~~-~spd---g~-~i~~~~~~~~~~~i~~~d  352 (417)
T TIGR02800       292 IAFTS-DRGGSPQIYMMDADGGEVR-RLT--------FR----GGYNASPS-WSPD---GD-LIAFVHREGGGFNIAVMD  352 (417)
T ss_pred             EEEEE-CCCCCceEEEEECCCCCEE-Eee--------cC----CCCccCeE-ECCC---CC-EEEEEEccCCceEEEEEe
Confidence            76543 3233  6888888766543 232        11    11334455 9998   55 666666554   788899


Q ss_pred             ccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCC---cEEEEecC
Q 021291          238 IRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQ---KIVLYNLD  282 (314)
Q Consensus       238 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg---~i~iw~~~  282 (314)
                      +.+ +. ...+... .......|+|++++|+..+.++   .+.+.+.+
T Consensus       353 ~~~-~~-~~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~  397 (417)
T TIGR02800       353 LDG-GG-ERVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTD  397 (417)
T ss_pred             CCC-CC-eEEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence            886 33 2333322 2334568999999887777654   35555544

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.44  E-value=3.3e-11  Score=102.46  Aligned_cols=196  Identities=13%  Similarity=0.097  Sum_probs=119.0

Q ss_pred             CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC---CeEEEEeCCCCCCCCCCeeeeecceeeEEEe
Q 021291           40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD---GTVKCWDIENGGLSSNPSLTIKTNSYHFCKL  116 (314)
Q Consensus        40 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  116 (314)
                      ..|.+||... .....+..+.  ..+.+.+|+|  |++.|+..+.+   ..|.+||+.+++...  +.....  ...   
T Consensus       184 ~~l~i~D~~g-~~~~~lt~~~--~~v~~p~wSp--Dg~~la~~s~~~~~~~l~~~dl~~g~~~~--l~~~~g--~~~---  251 (433)
T PRK04922        184 YALQVADSDG-YNPQTILRSA--EPILSPAWSP--DGKKLAYVSFERGRSAIYVQDLATGQREL--VASFRG--ING---  251 (433)
T ss_pred             EEEEEECCCC-CCceEeecCC--CccccccCCC--CCCEEEEEecCCCCcEEEEEECCCCCEEE--eccCCC--Ccc---
Confidence            4699999764 4444455555  4499999999  99999877643   469999998775311  100100  000   


Q ss_pred             eeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcC--eEEEEecCCCceeeeecccccC
Q 021291          117 SLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS--EVEIWDLNTAERCTRLHQNSCG  194 (314)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~--~i~vwd~~~~~~~~~~~~~~~~  194 (314)
                                                          ..+|+|+|+.++++. +.++  .|++||+.+++.. .+.     
T Consensus       252 ------------------------------------~~~~SpDG~~l~~~~-s~~g~~~Iy~~d~~~g~~~-~lt-----  288 (433)
T PRK04922        252 ------------------------------------APSFSPDGRRLALTL-SRDGNPEIYVMDLGSRQLT-RLT-----  288 (433)
T ss_pred             ------------------------------------CceECCCCCEEEEEE-eCCCCceEEEEECCCCCeE-ECc-----
Confidence                                                046999998876543 3334  6999999887643 333     


Q ss_pred             CCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCc--EEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecC
Q 021291          195 GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS--ILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA  272 (314)
Q Consensus       195 ~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~--i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~  272 (314)
                         .+.    ....... |+|+   |+.++++...+|.  |+++|+.. ++ ...+..+.......+|+|+|++|+..+.
T Consensus       289 ---~~~----~~~~~~~-~spD---G~~l~f~sd~~g~~~iy~~dl~~-g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~~~  355 (433)
T PRK04922        289 ---NHF----GIDTEPT-WAPD---GKSIYFTSDRGGRPQIYRVAASG-GS-AERLTFQGNYNARASVSPDGKKIAMVHG  355 (433)
T ss_pred             ---cCC----CCccceE-ECCC---CCEEEEEECCCCCceEEEEECCC-CC-eEEeecCCCCccCEEECCCCCEEEEEEC
Confidence               221    1233455 9998   5523444444554  66667665 33 3333333444557899999999876654


Q ss_pred             CC---cEEEEecCCCeeeEee-----eeeeecCCCceec
Q 021291          273 DQ---KIVLYNLDHSTYVLFG-----IGFVCDQEGNKFG  303 (314)
Q Consensus       273 dg---~i~iw~~~~~~~~~~~-----~~~~~~~~~~~~~  303 (314)
                      ++   .|.+||+.+++.....     ...+++++|..+.
T Consensus       356 ~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~spdG~~i~  394 (433)
T PRK04922        356 SGGQYRIAVMDLSTGSVRTLTPGSLDESPSFAPNGSMVL  394 (433)
T ss_pred             CCCceeEEEEECCCCCeEECCCCCCCCCceECCCCCEEE
Confidence            33   5999999877654321     1235567776543

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.43  E-value=1.4e-12  Score=106.33  Aligned_cols=168  Identities=18%  Similarity=0.189  Sum_probs=111.2

Q ss_pred             EEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCC
Q 021291           53 VSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEP  132 (314)
Q Consensus        53 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (314)
                      .+.+.+|.  +.|.|+.|+.  +|.+|++||.|-.+.|||.-..+..    ..+++. .....|+               
T Consensus        43 E~eL~GH~--GCVN~LeWn~--dG~lL~SGSDD~r~ivWd~~~~Kll----hsI~Tg-HtaNIFs---------------   98 (758)
T KOG1310|consen   43 EAELTGHT--GCVNCLEWNA--DGELLASGSDDTRLIVWDPFEYKLL----HSISTG-HTANIFS---------------   98 (758)
T ss_pred             hhhhcccc--ceecceeecC--CCCEEeecCCcceEEeecchhccee----eeeecc-cccceeE---------------
Confidence            35677898  4599999999  9999999999999999999865542    233322 1122232               


Q ss_pred             cceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCc----------eeeeecccccCCCCCcCCC
Q 021291          133 KDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAE----------RCTRLHQNSCGGSPNFSSK  202 (314)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~----------~~~~~~~~~~~~~~~h~~~  202 (314)
                                           +.|-|....-++++|..|..|++||+...+          ....+.        .|.. 
T Consensus        99 ---------------------vKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~--------cht~-  148 (758)
T KOG1310|consen   99 ---------------------VKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWS--------CHTD-  148 (758)
T ss_pred             ---------------------EeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhh--------hhhh-
Confidence                                 224454444455578889999999998522          111222        3333 


Q ss_pred             CCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecC---------CcceEEEEEeCCC-CeEEEecC
Q 021291          203 GRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH---------LEPVLCLSIDESC-NGGISGGA  272 (314)
Q Consensus       203 ~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h---------~~~v~~~~~~~~~-~~l~s~s~  272 (314)
                         .+-.++ -.|+++   ..+.++++||+|+-+|++.+..+-.....|         --...++..+|.. .+|+.|+.
T Consensus       149 ---rVKria-~~p~~P---htfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgs  221 (758)
T KOG1310|consen  149 ---RVKRIA-TAPNGP---HTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGS  221 (758)
T ss_pred             ---hhhhee-cCCCCC---ceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCC
Confidence               222333 455533   289999999999999999754433322222         2245678887754 47899999


Q ss_pred             CCcEEEEec
Q 021291          273 DQKIVLYNL  281 (314)
Q Consensus       273 dg~i~iw~~  281 (314)
                      |-..++||.
T Consensus       222 dpfarLYD~  230 (758)
T KOG1310|consen  222 DPFARLYDR  230 (758)
T ss_pred             Cchhhhhhh
Confidence            999999994

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.42  E-value=1.3e-12  Score=119.60  Aligned_cols=200  Identities=16%  Similarity=0.290  Sum_probs=146.6

Q ss_pred             ecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeC
Q 021291           14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI   93 (314)
Q Consensus        14 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~   93 (314)
                      ++.|-..|.++.-+|...+.+||+.||.|++|....++.+..++.... +.|+.+.|+.  .|+.+..+..||.+.+|.+
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~--qGnk~~i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNH--QGNKFGIVDGDGDLSLWQA 2280 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcc--cCCceeeeccCCceeeccc
Confidence            344567788888889888999999999999999999988888876554 7799999999  9999999999999999998


Q ss_pred             CCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEee--cCc
Q 021291           94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG--EQL  171 (314)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~d  171 (314)
                      ..     +|.+..+.+......|.+.                                      .   .+++.+|  +.+
T Consensus      2281 ~p-----k~~~s~qchnk~~~Df~Fi--------------------------------------~---s~~~tag~s~d~ 2314 (2439)
T KOG1064|consen 2281 SP-----KPYTSWQCHNKALSDFRFI--------------------------------------G---SLLATAGRSSDN 2314 (2439)
T ss_pred             CC-----cceeccccCCccccceeee--------------------------------------e---hhhhccccCCCC
Confidence            83     3344444443333322221                                      1   1222222  346


Q ss_pred             CeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecC
Q 021291          172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH  251 (314)
Q Consensus       172 ~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h  251 (314)
                      +.+.+||..-.....-+..       .|    .+.+++++ |.|..   + +|++|+.+|.|++||++. .+..+.++. 
T Consensus      2315 ~n~~lwDtl~~~~~s~v~~-------~H----~~gaT~l~-~~P~~---q-llisggr~G~v~l~D~rq-rql~h~~~~- 2376 (2439)
T KOG1064|consen 2315 RNVCLWDTLLPPMNSLVHT-------CH----DGGATVLA-YAPKH---Q-LLISGGRKGEVCLFDIRQ-RQLRHTFQA- 2376 (2439)
T ss_pred             CcccchhcccCcccceeee-------ec----CCCceEEE-EcCcc---e-EEEecCCcCcEEEeehHH-HHHHHHhhh-
Confidence            8899999753321111111       45    44677787 99973   3 999999999999999997 777766665 


Q ss_pred             CcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291          252 LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF  289 (314)
Q Consensus       252 ~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~  289 (314)
                              ++ ...++++|+..|.++||++.....+..
T Consensus      2377 --------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~ 2405 (2439)
T KOG1064|consen 2377 --------LD-TREYFVTGSSEGNIKIWRLSEFGLLHT 2405 (2439)
T ss_pred             --------hh-hhheeeccCcccceEEEEccccchhhc
Confidence                    44 455899999999999999998866654

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.42  E-value=4e-12  Score=97.50  Aligned_cols=188  Identities=14%  Similarity=0.103  Sum_probs=121.7

Q ss_pred             EEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEE-EeecCCeEEEEeCCCCCCCCC
Q 021291           23 DVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCWDIENGGLSSN  101 (314)
Q Consensus        23 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~v~iwd~~~~~~~~~  101 (314)
                      -++|||+|+++|+++.- .+.|-|.++-+..+.+..-   +.|.-+.|..  |.-+++ ....|+.|.+|++...+.-. 
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cl---dki~yieW~a--ds~~ilC~~yk~~~vqvwsl~Qpew~c-   85 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCL---DKIVYIEWKA--DSCHILCVAYKDPKVQVWSLVQPEWYC-   85 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHH---HHhhheeeec--cceeeeeeeeccceEEEEEeecceeEE-
Confidence            47899999999999877 6888888876544433222   3488889988  655554 56778999999998765422 


Q ss_pred             CeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCC
Q 021291          102 PSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNT  181 (314)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~  181 (314)
                         .+...+.....                                      ++|||+|+.++. +...|-.|.+|.+.+
T Consensus        86 ---kIdeg~agls~--------------------------------------~~WSPdgrhiL~-tseF~lriTVWSL~t  123 (447)
T KOG4497|consen   86 ---KIDEGQAGLSS--------------------------------------ISWSPDGRHILL-TSEFDLRITVWSLNT  123 (447)
T ss_pred             ---EeccCCCccee--------------------------------------eeECCCcceEee-eecceeEEEEEEecc
Confidence               22222221111                                      569999998887 566689999999987


Q ss_pred             CceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeec-C------------------------------
Q 021291          182 AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE-D------------------------------  230 (314)
Q Consensus       182 ~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~-d------------------------------  230 (314)
                      ...... +         |   .+..+-.++ |+|+   |+ +.+..+. |                              
T Consensus       124 ~~~~~~-~---------~---pK~~~kg~~-f~~d---g~-f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~Dltgie  185 (447)
T KOG4497|consen  124 QKGYLL-P---------H---PKTNVKGYA-FHPD---GQ-FCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIE  185 (447)
T ss_pred             ceeEEe-c---------c---cccCceeEE-ECCC---Cc-eeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCce
Confidence            664332 1         2   111223343 8887   55 4444332 1                              


Q ss_pred             -----CcEEEEEccCCCCceEeeecC-CcceEEEEEeCCCCeEEEecCCCcEEEEe
Q 021291          231 -----GSILVWDIRNPGIPLTAMKVH-LEPVLCLSIDESCNGGISGGADQKIVLYN  280 (314)
Q Consensus       231 -----g~i~vwd~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~s~dg~i~iw~  280 (314)
                           ..+.|||.-- .-.+  +.-| .-.+..++|+|.+++|+.|+.|+.+||-+
T Consensus       186 WsPdg~~laVwd~~L-eykv--~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvln  238 (447)
T KOG4497|consen  186 WSPDGNWLAVWDNVL-EYKV--YAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLN  238 (447)
T ss_pred             ECCCCcEEEEecchh-hhee--eeeeeccceeEEEeccccceEEeeccchhhhhhc
Confidence                 2344454321 1111  1222 35788999999999999999999999855

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.40  E-value=8.5e-11  Score=104.54  Aligned_cols=262  Identities=13%  Similarity=0.092  Sum_probs=156.2

Q ss_pred             EecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCC--Ce-----EEEEEeccCCcccEEEE-EEcccCCCC-eEEEee
Q 021291           13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ--HR-----TVSSSWVHSAAHGIVSV-ATGPSIGLN-KVISQG   83 (314)
Q Consensus        13 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~--~~-----~~~~~~~~~~~~~v~~~-~~~~~~~~~-~l~s~~   83 (314)
                      ++..-...+.++.+.+.++.+|.++.||.|++.+++.  .+     +.+....+.. +.+.+| +|... ... .++.+.
T Consensus      1093 tys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~-g~vv~m~a~~~~-~~S~~lvy~T 1170 (1431)
T KOG1240|consen 1093 TYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKD-GVVVSMHAFTAI-VQSHVLVYAT 1170 (1431)
T ss_pred             EEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCC-CceEEeeccccc-ccceeEEEEE
Confidence            3333467888999999999999999999999999875  22     1222222332 234444 45442 333 778888


Q ss_pred             cCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeec-CCCCCC---ceeccC
Q 021291           84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTD-SLCDSK---DDVPAE  159 (314)
Q Consensus        84 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~  159 (314)
                      .-+.|..||++.....+......+.........++... -...+...+...+|+++....+..- .+.+..   +..+|-
T Consensus      1171 ~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~-WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~ 1249 (1431)
T KOG1240|consen 1171 DLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCN-WLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPT 1249 (1431)
T ss_pred             eccceEEecchhhhhHHhhhcCccccceeEEEecCCce-EEEEecCCceEEEEEeecCceeecccCcccCCcceEEeecc
Confidence            88999999999876555333344444444444444333 3334555566788888877655443 333322   444443


Q ss_pred             CC--ceEEEeec-CcCeEEEEecCCCceeeeecccccCCCCCcCCCCC-----ceeeeEEEecCCCCCCceEEEEeecCC
Q 021291          160 GP--KYMAVAGE-QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGR-----GMCMAVQAYLPSKSQGFVNVLAGYEDG  231 (314)
Q Consensus       160 ~~--~~~~~~g~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~-----~~~~~~~~~~p~~~~g~~~l~~g~~dg  231 (314)
                      .+  ...+++|+ ..+.|.+|++.++.+...+..........+..+..     ....... ..+.+. +. ++.+|+.|.
T Consensus      1250 ~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~-~~~~~~-~~-~~ltggsd~ 1326 (1431)
T KOG1240|consen 1250 YPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGIS-CGVCEK-NG-FLLTGGSDM 1326 (1431)
T ss_pred             CCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCccccee-eecccC-Cc-eeeecCCcc
Confidence            33  44444555 57889999999998766665321111111111111     1111111 111212 22 899999999


Q ss_pred             cEEEEEccCCCCc----------------------------eE-------------------e--------eecCCcceE
Q 021291          232 SILVWDIRNPGIP----------------------------LT-------------------A--------MKVHLEPVL  256 (314)
Q Consensus       232 ~i~vwd~~~~~~~----------------------------~~-------------------~--------~~~h~~~v~  256 (314)
                      .|+.||...+...                            +.                   .        -..|.++|+
T Consensus      1327 kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~It 1406 (1431)
T KOG1240|consen 1327 KIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPIT 1406 (1431)
T ss_pred             ceeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhh
Confidence            9999997642111                            00                   0        124778999


Q ss_pred             EEEEe-CCCCeEEEecCCCcEEEEe
Q 021291          257 CLSID-ESCNGGISGGADQKIVLYN  280 (314)
Q Consensus       257 ~~~~~-~~~~~l~s~s~dg~i~iw~  280 (314)
                      +|++- .+..+|++++.||.|+||.
T Consensus      1407 dma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1407 DMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             hhhhhccCccEEEEecCCCeeeecC
Confidence            99883 2355789999999999994

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.40  E-value=3.6e-13  Score=114.73  Aligned_cols=204  Identities=16%  Similarity=0.259  Sum_probs=131.7

Q ss_pred             CCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCe
Q 021291            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (314)
Q Consensus         8 ~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (314)
                      ..++..++||.+.|+.++.+.++.++++++.|..|++|.+.++..+..+++|+++  |++++|+|.      .+.+.||+
T Consensus       222 ~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtga--vtaiafsP~------~sss~dgt  293 (1113)
T KOG0644|consen  222 ARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGA--VTAIAFSPR------ASSSDDGT  293 (1113)
T ss_pred             hhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccc--eeeeccCcc------ccCCCCCc
Confidence            3567889999999999999999999999999999999999999999999999966  999999992      27888999


Q ss_pred             EEEEeCC-CCC-CCCCCeeeeecceeeEEEe--eeeeccccccccCC----------------------C----------
Q 021291           88 VKCWDIE-NGG-LSSNPSLTIKTNSYHFCKL--SLVKEPYANAKQAN----------------------E----------  131 (314)
Q Consensus        88 v~iwd~~-~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~----------------------~----------  131 (314)
                      +++||.+ ... ....|. ..... ...+.+  ...+........++                      .          
T Consensus       294 ~~~wd~r~~~~~y~prp~-~~~~~-~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~a  371 (1113)
T KOG0644|consen  294 CRIWDARLEPRIYVPRPL-KFTEK-DLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTA  371 (1113)
T ss_pred             eEeccccccccccCCCCC-Ccccc-cceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceee
Confidence            9999987 111 010000 00000 000000  00000000000000                      0          


Q ss_pred             ----CcceeeccCCceeeecCCCCCC----ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCC
Q 021291          132 ----PKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKG  203 (314)
Q Consensus       132 ----~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~  203 (314)
                          ....|++..+ .....+.+|.+    +.++|-+..+.. +++.||...|||+-.+.+++.+..       +|..  
T Consensus       372 r~~~~~~vwnl~~g-~l~H~l~ghsd~~yvLd~Hpfn~ri~m-sag~dgst~iwdi~eg~pik~y~~-------gh~k--  440 (1113)
T KOG0644|consen  372 RNDHRLCVWNLYTG-QLLHNLMGHSDEVYVLDVHPFNPRIAM-SAGYDGSTIIWDIWEGIPIKHYFI-------GHGK--  440 (1113)
T ss_pred             eeeeEeeeeecccc-hhhhhhcccccceeeeeecCCCcHhhh-hccCCCceEeeecccCCcceeeec-------ccce--
Confidence                0001111111 11223344555    888898887766 555699999999999988877663       5533  


Q ss_pred             CceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccC
Q 021291          204 RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (314)
Q Consensus       204 ~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~  240 (314)
                         ..... |+++   |. .++....-|.++|.....
T Consensus       441 ---l~d~k-FSqd---gt-s~~lsd~hgql~i~g~gq  469 (1113)
T KOG0644|consen  441 ---LVDGK-FSQD---GT-SIALSDDHGQLYILGTGQ  469 (1113)
T ss_pred             ---eeccc-cCCC---Cc-eEecCCCCCceEEeccCC
Confidence               33333 9998   55 677777778888887653

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.38  E-value=4.9e-10  Score=95.43  Aligned_cols=222  Identities=13%  Similarity=0.089  Sum_probs=124.2

Q ss_pred             EecCCCCceeEEEEccCCCEEEEecCC---CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEE-eecCCe-
Q 021291           13 VLRGHRASVTDVCFHQTKPILFAGTTG---GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS-QGRDGT-   87 (314)
Q Consensus        13 ~l~~h~~~v~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s-~~~dg~-   87 (314)
                      .+..+...+.+..|+|||+.|+..+.+   ..|.+||+.+++... +....  ......+|+|  |++.|+. .+.+|. 
T Consensus       212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~--g~~~~~~wSP--DG~~La~~~~~~g~~  286 (448)
T PRK04792        212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFP--GINGAPRFSP--DGKKLALVLSKDGQP  286 (448)
T ss_pred             EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCC--CCcCCeeECC--CCCEEEEEEeCCCCe
Confidence            334455677889999999988876442   368899998876533 22222  2245789999  9997764 566665 


Q ss_pred             -EEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEE
Q 021291           88 -VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV  166 (314)
Q Consensus        88 -v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (314)
                       |.++|+.+++...     +.......                                      ...+|+|+|+.++.+
T Consensus       287 ~Iy~~dl~tg~~~~-----lt~~~~~~--------------------------------------~~p~wSpDG~~I~f~  323 (448)
T PRK04792        287 EIYVVDIATKALTR-----ITRHRAID--------------------------------------TEPSWHPDGKSLIFT  323 (448)
T ss_pred             EEEEEECCCCCeEE-----CccCCCCc--------------------------------------cceEECCCCCEEEEE
Confidence             7777887764311     11110000                                      004599999877664


Q ss_pred             eecCc--CeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCc--EEEEEccCCC
Q 021291          167 AGEQL--SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS--ILVWDIRNPG  242 (314)
Q Consensus       167 ~g~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~--i~vwd~~~~~  242 (314)
                      + ..+  ..|.++|+.+++... +...      ++      ...... |+|+   |+.++++...++.  |.++|+.+ +
T Consensus       324 s-~~~g~~~Iy~~dl~~g~~~~-Lt~~------g~------~~~~~~-~SpD---G~~l~~~~~~~g~~~I~~~dl~~-g  384 (448)
T PRK04792        324 S-ERGGKPQIYRVNLASGKVSR-LTFE------GE------QNLGGS-ITPD---GRSMIMVNRTNGKFNIARQDLET-G  384 (448)
T ss_pred             E-CCCCCceEEEEECCCCCEEE-EecC------CC------CCcCee-ECCC---CCEEEEEEecCCceEEEEEECCC-C
Confidence            3 333  357777887766432 2210      11      112234 9998   5534444444553  55567765 4


Q ss_pred             CceEeeecCCcceEEEEEeCCCCeEEEecC-CCc--EEEEecCCCeeeEeeeeeeecCCCceeceeecc
Q 021291          243 IPLTAMKVHLEPVLCLSIDESCNGGISGGA-DQK--IVLYNLDHSTYVLFGIGFVCDQEGNKFGTTWHI  308 (314)
Q Consensus       243 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-dg~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~w~~  308 (314)
                      .. ..+... .......|+|+|+.|+..+. +|.  +.+++.+ ++......    .+.+..-...|.+
T Consensus       385 ~~-~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~~l~----~~~g~~~~p~Wsp  446 (448)
T PRK04792        385 AM-QVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKARLP----AGQGEVKSPAWSP  446 (448)
T ss_pred             Ce-EEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECc----CCCCCcCCCccCC
Confidence            33 333322 12234579999998766554 333  6667764 33333221    2344444556654

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.37  E-value=5e-11  Score=93.41  Aligned_cols=183  Identities=16%  Similarity=0.151  Sum_probs=126.3

Q ss_pred             CceeEEEEcc-CCCEEEEecCC--CeEEEEeCCCCeEEEEEeccCC-------cccEEEEEEcccCCCCeEEEeecCCeE
Q 021291           19 ASVTDVCFHQ-TKPILFAGTTG--GELRIWDTVQHRTVSSSWVHSA-------AHGIVSVATGPSIGLNKVISQGRDGTV   88 (314)
Q Consensus        19 ~~v~~~~~~~-~~~~l~s~~~d--g~v~iwd~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~l~s~~~dg~v   88 (314)
                      ..+..+.-++ +..++|+|+..  ..+.|||++..+.+..-+.-..       +-.++++.|.+......|+++..-+.|
T Consensus       149 ~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqv  228 (412)
T KOG3881|consen  149 PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQV  228 (412)
T ss_pred             CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeE
Confidence            3455565555 44577789999  8899999998865544332111       134678889882227899999999999


Q ss_pred             EEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEee
Q 021291           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG  168 (314)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  168 (314)
                      ++||.+.++   +|+..+.........                                      +...|.++.++  +|
T Consensus       229 R~YDt~~qR---RPV~~fd~~E~~is~--------------------------------------~~l~p~gn~Iy--~g  265 (412)
T KOG3881|consen  229 RLYDTRHQR---RPVAQFDFLENPISS--------------------------------------TGLTPSGNFIY--TG  265 (412)
T ss_pred             EEecCcccC---cceeEeccccCccee--------------------------------------eeecCCCcEEE--Ee
Confidence            999999664   445444433222111                                      33557887655  46


Q ss_pred             cCcCeEEEEecCCCceeee-ecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEe
Q 021291          169 EQLSEVEIWDLNTAERCTR-LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA  247 (314)
Q Consensus       169 ~~d~~i~vwd~~~~~~~~~-~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~  247 (314)
                      ..-+.+..||++.+..... +.        +    ..+.+.++. .+|.   ++ ++++++.|..|+|+|+.+ .+++..
T Consensus       266 n~~g~l~~FD~r~~kl~g~~~k--------g----~tGsirsih-~hp~---~~-~las~GLDRyvRIhD~kt-rkll~k  327 (412)
T KOG3881|consen  266 NTKGQLAKFDLRGGKLLGCGLK--------G----ITGSIRSIH-CHPT---HP-VLASCGLDRYVRIHDIKT-RKLLHK  327 (412)
T ss_pred             cccchhheecccCceeeccccC--------C----ccCCcceEE-EcCC---Cc-eEEeeccceeEEEeeccc-chhhhh
Confidence            6679999999999987766 44        2    467888887 8887   34 999999999999999998 666544


Q ss_pred             eecCCcceEEEEEeCC
Q 021291          248 MKVHLEPVLCLSIDES  263 (314)
Q Consensus       248 ~~~h~~~v~~~~~~~~  263 (314)
                      ... ...++++-+.++
T Consensus       328 vYv-Ks~lt~il~~~~  342 (412)
T KOG3881|consen  328 VYV-KSRLTFILLRDD  342 (412)
T ss_pred             hhh-hccccEEEecCC
Confidence            332 445566666443

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.36  E-value=4.7e-12  Score=103.76  Aligned_cols=220  Identities=15%  Similarity=0.193  Sum_probs=145.7

Q ss_pred             ceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCC-------CeEEEEEeccCCcccEEEEEEcccCCCCeEEEe
Q 021291           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ-------HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ   82 (314)
Q Consensus        10 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~   82 (314)
                      .+..+.||+..|..++--.+.+-+++++.|.+|++|.++.       ..+..+++.|+  .+|.++.|..  +.+.+++ 
T Consensus       727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHk--k~i~~igfL~--~lr~i~S-  801 (1034)
T KOG4190|consen  727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHK--KPIHDIGFLA--DLRSIAS-  801 (1034)
T ss_pred             eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhcc--Ccccceeeee--ccceeee-
Confidence            3567889999999988766777899999999999999863       24677788888  4599999998  7556655 


Q ss_pred             ecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCc
Q 021291           83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPK  162 (314)
Q Consensus        83 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (314)
                       .||-|++||.--++...+.....+.......                                       .++-.-...
T Consensus       802 -cD~giHlWDPFigr~Laq~~dapk~~a~~~i---------------------------------------kcl~nv~~~  841 (1034)
T KOG4190|consen  802 -CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNI---------------------------------------KCLENVDRH  841 (1034)
T ss_pred             -ccCcceeecccccchhHhhhcCcccCCCcee---------------------------------------EecccCcch
Confidence             4788999998776543311111111111100                                       011111244


Q ss_pred             eEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCC
Q 021291          163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG  242 (314)
Q Consensus       163 ~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~  242 (314)
                      ++++.++...+|+++|.+..+-...++.       ......++...+++ ..|.   |+ .++++-.+|.|.+.|.++ +
T Consensus       842 iliAgcsaeSTVKl~DaRsce~~~E~kV-------cna~~Pna~~R~ia-Va~~---GN-~lAa~LSnGci~~LDaR~-G  908 (1034)
T KOG4190|consen  842 ILIAGCSAESTVKLFDARSCEWTCELKV-------CNAPGPNALTRAIA-VADK---GN-KLAAALSNGCIAILDARN-G  908 (1034)
T ss_pred             heeeeccchhhheeeecccccceeeEEe-------ccCCCCchheeEEE-eccC---cc-hhhHHhcCCcEEEEecCC-C
Confidence            5555557789999999999887666652       11122344566665 7776   55 899999999999999998 7


Q ss_pred             CceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEE-EecCCCeeeE
Q 021291          243 IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVL-YNLDHSTYVL  288 (314)
Q Consensus       243 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~i-w~~~~~~~~~  288 (314)
                      ..+..+....-....++ .|..+.|+....|.++.+ |..-.+...+
T Consensus       909 ~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~  954 (1034)
T KOG4190|consen  909 KVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHL  954 (1034)
T ss_pred             ceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeee
Confidence            77766554333333333 344456677777777777 7665554444

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.33  E-value=8.1e-10  Score=94.02  Aligned_cols=196  Identities=15%  Similarity=0.090  Sum_probs=119.2

Q ss_pred             CCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC---CeEEEEeCCCCCCCCCCeeeeecceeeEEE
Q 021291           39 GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD---GTVKCWDIENGGLSSNPSLTIKTNSYHFCK  115 (314)
Q Consensus        39 dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  115 (314)
                      ...|.++|..... ...+..+.  ..+...+|+|  ++++|+.++.+   ..|++||+.+++...  +......  ... 
T Consensus       169 ~~~l~~~d~~g~~-~~~l~~~~--~~~~~p~~Sp--dg~~la~~~~~~~~~~i~v~d~~~g~~~~--~~~~~~~--~~~-  238 (417)
T TIGR02800       169 RYELQVADYDGAN-PQTITRSR--EPILSPAWSP--DGQKLAYVSFESGKPEIYVQDLATGQREK--VASFPGM--NGA-  238 (417)
T ss_pred             cceEEEEcCCCCC-CEEeecCC--CceecccCCC--CCCEEEEEEcCCCCcEEEEEECCCCCEEE--eecCCCC--ccc-
Confidence            3468888875433 34444454  3488999999  99999877654   479999998874311  1000000  000 


Q ss_pred             eeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCc--CeEEEEecCCCceeeeeccccc
Q 021291          116 LSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL--SEVEIWDLNTAERCTRLHQNSC  193 (314)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d--~~i~vwd~~~~~~~~~~~~~~~  193 (314)
                                                            .+|+|+|+.++++ .+.+  ..|++||+.++... .+.    
T Consensus       239 --------------------------------------~~~spDg~~l~~~-~~~~~~~~i~~~d~~~~~~~-~l~----  274 (417)
T TIGR02800       239 --------------------------------------PAFSPDGSKLAVS-LSKDGNPDIYVMDLDGKQLT-RLT----  274 (417)
T ss_pred             --------------------------------------eEECCCCCEEEEE-ECCCCCccEEEEECCCCCEE-ECC----
Confidence                                                  4599999877653 3333  46899998876543 232    


Q ss_pred             CCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCC--cEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEec
Q 021291          194 GGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG--SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG  271 (314)
Q Consensus       194 ~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg--~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s  271 (314)
                          .+.    ....... |+|+   |+.++++...++  .|+++|+.. ++ ...+..+...+..+.|+|++++|+.++
T Consensus       275 ----~~~----~~~~~~~-~s~d---g~~l~~~s~~~g~~~iy~~d~~~-~~-~~~l~~~~~~~~~~~~spdg~~i~~~~  340 (417)
T TIGR02800       275 ----NGP----GIDTEPS-WSPD---GKSIAFTSDRGGSPQIYMMDADG-GE-VRRLTFRGGYNASPSWSPDGDLIAFVH  340 (417)
T ss_pred             ----CCC----CCCCCEE-ECCC---CCEEEEEECCCCCceEEEEECCC-CC-EEEeecCCCCccCeEECCCCCEEEEEE
Confidence                121    1222344 9987   552334443344  577788775 33 344555566778889999999998887


Q ss_pred             CCC---cEEEEecCCCeeeEee-----eeeeecCCCcee
Q 021291          272 ADQ---KIVLYNLDHSTYVLFG-----IGFVCDQEGNKF  302 (314)
Q Consensus       272 ~dg---~i~iw~~~~~~~~~~~-----~~~~~~~~~~~~  302 (314)
                      .++   .|.+||+.++......     ...+++|+|..+
T Consensus       341 ~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p~~spdg~~l  379 (417)
T TIGR02800       341 REGGGFNIAVMDLDGGGERVLTDTGLDESPSFAPNGRMI  379 (417)
T ss_pred             ccCCceEEEEEeCCCCCeEEccCCCCCCCceECCCCCEE
Confidence            776   7889998875433221     122455666544

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.32  E-value=6.2e-10  Score=91.87  Aligned_cols=194  Identities=15%  Similarity=0.136  Sum_probs=130.8

Q ss_pred             cCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCC-cccEEEEEE------cc------------cCCCCeEEEeecCCeE
Q 021291           28 QTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA-AHGIVSVAT------GP------------SIGLNKVISQGRDGTV   88 (314)
Q Consensus        28 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-~~~v~~~~~------~~------------~~~~~~l~s~~~dg~v   88 (314)
                      |-..++|....||.+++||..+++....+....+ .+..++..|      +|            ..+...++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            3467899999999999999999887776643211 012334444      22            1133467778888999


Q ss_pred             EEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEee
Q 021291           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG  168 (314)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  168 (314)
                      .+|++..+++..  .+....+......                                      +.++.+-. .+- ++
T Consensus        83 ~~ys~~~g~it~--~~st~~h~~~v~~--------------------------------------~~~~~~~~-ciy-S~  120 (541)
T KOG4547|consen   83 LLYSVAGGEITA--KLSTDKHYGNVNE--------------------------------------ILDAQRLG-CIY-SV  120 (541)
T ss_pred             EEEEecCCeEEE--EEecCCCCCccee--------------------------------------eecccccC-ceE-ec
Confidence            999999887533  1111111111110                                      11222222 333 56


Q ss_pred             cCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEee
Q 021291          169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM  248 (314)
Q Consensus       169 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~  248 (314)
                      +.|+.+..|+......++.+..            ....+.+++ ++||   |. .+++++  +.|++||+.+ ++.+..+
T Consensus       121 ~ad~~v~~~~~~~~~~~~~~~~------------~~~~~~sl~-is~D---~~-~l~~as--~~ik~~~~~~-kevv~~f  180 (541)
T KOG4547|consen  121 GADLKVVYILEKEKVIIRIWKE------------QKPLVSSLC-ISPD---GK-ILLTAS--RQIKVLDIET-KEVVITF  180 (541)
T ss_pred             CCceeEEEEecccceeeeeecc------------CCCccceEE-EcCC---CC-EEEecc--ceEEEEEccC-ceEEEEe
Confidence            6689999999999998888773            234566666 9998   44 777775  5899999999 9999999


Q ss_pred             ecCCcceEEEEEeCC-----CCeEE-EecCCCcEEEEecCC
Q 021291          249 KVHLEPVLCLSIDES-----CNGGI-SGGADQKIVLYNLDH  283 (314)
Q Consensus       249 ~~h~~~v~~~~~~~~-----~~~l~-s~s~dg~i~iw~~~~  283 (314)
                      .+|.++|.++.|..+     |.++. +...+.-+.+|-++.
T Consensus       181 tgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  181 TGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             cCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            999999999999544     55554 444566788898765

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.32  E-value=1.8e-11  Score=93.42  Aligned_cols=249  Identities=12%  Similarity=0.184  Sum_probs=142.6

Q ss_pred             CCceeEEEEccCCCEEEEecCCCeEEEEeCCCCe-----EEEEEeccCC----------cccEEEEEEcccCCCCeEEEe
Q 021291           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-----TVSSSWVHSA----------AHGIVSVATGPSIGLNKVISQ   82 (314)
Q Consensus        18 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-----~~~~~~~~~~----------~~~v~~~~~~~~~~~~~l~s~   82 (314)
                      .+.|+++.|...|.||++|...|.|.+|.-+...     ....++.|..          ...|..+.|........|+..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            4679999999999999999999999999865432     2233455432          134788888763334567777


Q ss_pred             ecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccc-----cccCCCCcceeeccCCceeeecCCCCCC-cee
Q 021291           83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN-----AKQANEPKDCYEREVGETVDTDSLCDSK-DDV  156 (314)
Q Consensus        83 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  156 (314)
                      +.|.+|++|.+....+..  +   ..........++.+.+...     ...-.....++...+.+......+.|-. +++
T Consensus       106 tNdktiKlWKiyeknlk~--v---a~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~  180 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKV--V---AENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISF  180 (460)
T ss_pred             cCCceeeeeeeecccchh--h---hccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeee
Confidence            889999999998764321  0   0000000000111111000     0000001111111111111111111222 778


Q ss_pred             ccCCCceEEEeecCcCeEEEEecCCCce---eeeecccccCCCCCcC-CCCCceeeeEEEecCCCCCCceEEEEeecCCc
Q 021291          157 PAEGPKYMAVAGEQLSEVEIWDLNTAER---CTRLHQNSCGGSPNFS-SKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS  232 (314)
Q Consensus       157 ~~~~~~~~~~~g~~d~~i~vwd~~~~~~---~~~~~~~~~~~~~~h~-~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~  232 (314)
                      ..|.+.++  ++. |=.|.+|++.-...   +..++        .|. .+....+++.. |+|...   ..+.-.+..|.
T Consensus       181 NsD~et~l--SaD-dLrINLWnl~i~D~sFnIVDiK--------P~nmeeLteVItSae-Fhp~~c---n~fmYSsSkG~  245 (460)
T COG5170         181 NSDKETLL--SAD-DLRINLWNLEIIDGSFNIVDIK--------PHNMEELTEVITSAE-FHPEMC---NVFMYSSSKGE  245 (460)
T ss_pred             cCchheee--ecc-ceeeeeccccccCCceEEEecc--------CccHHHHHHHHhhcc-cCHhHc---ceEEEecCCCc
Confidence            88877665  443 77899999875442   22233        221 12233456665 999743   27777888999


Q ss_pred             EEEEEccCCCCc-----eEe----------eecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeee
Q 021291          233 ILVWDIRNPGIP-----LTA----------MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYV  287 (314)
Q Consensus       233 i~vwd~~~~~~~-----~~~----------~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~  287 (314)
                      |++-|+|...-+     +..          +.+-...|..+.|+++|+++++-+. -+|++||++..+..
T Consensus       246 Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~p  314 (460)
T COG5170         246 IKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNP  314 (460)
T ss_pred             EEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCC
Confidence            999999842111     111          1122346888999999998887755 47999999877643

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.32  E-value=1.2e-10  Score=101.91  Aligned_cols=198  Identities=15%  Similarity=0.211  Sum_probs=140.1

Q ss_pred             ceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcc--cEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCC
Q 021291           20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAH--GIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG   97 (314)
Q Consensus        20 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~   97 (314)
                      .|....+.-+...++.++.+..+.+||...+.....+......-  ...-+-+++  +.-++++|+.-+.|.+|+.....
T Consensus        89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~--~~~~i~~gsv~~~iivW~~~~dn  166 (967)
T KOG0974|consen   89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSA--EELYIASGSVFGEIIVWKPHEDN  166 (967)
T ss_pred             cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccC--cEEEEEeccccccEEEEeccccC
Confidence            34444444566688888888999999998877666655433110  011222344  55688899999999999987221


Q ss_pred             CCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEE
Q 021291           98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIW  177 (314)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vw  177 (314)
                         .|. .+..+..  ..|.                                    +.++-+|.+++  +.++|+++++|
T Consensus       167 ---~p~-~l~GHeG--~iF~------------------------------------i~~s~dg~~i~--s~SdDRsiRlW  202 (967)
T KOG0974|consen  167 ---KPI-RLKGHEG--SIFS------------------------------------IVTSLDGRYIA--SVSDDRSIRLW  202 (967)
T ss_pred             ---Ccc-eecccCC--ceEE------------------------------------EEEccCCcEEE--EEecCcceeee
Confidence               112 1111111  1111                                    45777887554  67789999999


Q ss_pred             ecCCCceee-eecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCc-ce
Q 021291          178 DLNTAERCT-RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE-PV  255 (314)
Q Consensus       178 d~~~~~~~~-~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~-~v  255 (314)
                      ++.+.+... ..-        +|    ...++.+. |.|+      .++++++|-+.++|+..  +..+..+.+|.. .|
T Consensus       203 ~i~s~~~~~~~~f--------gH----saRvw~~~-~~~n------~i~t~gedctcrvW~~~--~~~l~~y~~h~g~~i  261 (967)
T KOG0974|consen  203 PIDSREVLGCTGF--------GH----SARVWACC-FLPN------RIITVGEDCTCRVWGVN--GTQLEVYDEHSGKGI  261 (967)
T ss_pred             ecccccccCcccc--------cc----cceeEEEE-eccc------eeEEeccceEEEEEecc--cceehhhhhhhhcce
Confidence            999887654 222        56    55788887 9987      89999999999999776  566668888865 69


Q ss_pred             EEEEEeCCCCeEEEecCCCcEEEEecCCC
Q 021291          256 LCLSIDESCNGGISGGADQKIVLYNLDHS  284 (314)
Q Consensus       256 ~~~~~~~~~~~l~s~s~dg~i~iw~~~~~  284 (314)
                      +.++..++...++|++.|+.+++|++...
T Consensus       262 w~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  262 WKIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             eEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence            99999999989999999999999998654

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.31  E-value=3e-08  Score=80.33  Aligned_cols=242  Identities=9%  Similarity=0.042  Sum_probs=139.1

Q ss_pred             EccCCCEEEEecC----------CCeEEEEeCCCCeEEEEEeccCCc-----ccEEEEEEcccCCCCeEEEee-c-CCeE
Q 021291           26 FHQTKPILFAGTT----------GGELRIWDTVQHRTVSSSWVHSAA-----HGIVSVATGPSIGLNKVISQG-R-DGTV   88 (314)
Q Consensus        26 ~~~~~~~l~s~~~----------dg~v~iwd~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~l~s~~-~-dg~v   88 (314)
                      ++|||+.|+.+..          +..|.+||..+.+.+..+.....+     ..-..++++|  ||++|+... . +..|
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~--dgk~l~V~n~~p~~~V  130 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP--DNKTLLFYQFSPSPAV  130 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC--CCCEEEEecCCCCCEE
Confidence            8999988876654          789999999999999888753321     1234789999  999888766 3 6899


Q ss_pred             EEEeCCCCCCCCCCeeeeecceeeEEEeeeee-ccccccccCCCCcceeeccC-Cceeeec---CCCCCC-----ceecc
Q 021291           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK-EPYANAKQANEPKDCYEREV-GETVDTD---SLCDSK-----DDVPA  158 (314)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~-----~~~~~  158 (314)
                      .+.|+.+++.+.    ++....   |..-... ..........+....+.+.. ++.....   +.....     -.+.+
T Consensus       131 ~VvD~~~~kvv~----ei~vp~---~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~  203 (352)
T TIGR02658       131 GVVDLEGKAFVR----MMDVPD---CYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSN  203 (352)
T ss_pred             EEEECCCCcEEE----EEeCCC---CcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEc
Confidence            999999987654    222211   1110000 00000111111111111111 1100000   001000     13455


Q ss_pred             -CCCceEEEeecCcCeEEEEecCCCc-----eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEee----
Q 021291          159 -EGPKYMAVAGEQLSEVEIWDLNTAE-----RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY----  228 (314)
Q Consensus       159 -~~~~~~~~~g~~d~~i~vwd~~~~~-----~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~----  228 (314)
                       +|..+++ +.  .|+|.+.|+....     ....+....     .-.....+....++ ++|+   ++.+++...    
T Consensus       204 ~dg~~~~v-s~--eG~V~~id~~~~~~~~~~~~~~~~~~~-----~~~~wrP~g~q~ia-~~~d---g~~lyV~~~~~~~  271 (352)
T TIGR02658       204 KSGRLVWP-TY--TGKIFQIDLSSGDAKFLPAIEAFTEAE-----KADGWRPGGWQQVA-YHRA---RDRIYLLADQRAK  271 (352)
T ss_pred             CCCcEEEE-ec--CCeEEEEecCCCcceecceeeeccccc-----cccccCCCcceeEE-EcCC---CCEEEEEecCCcc
Confidence             6765553 33  3999999965432     222221100     00000111222254 9988   442333231    


Q ss_pred             -----cCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCC-eEEEec-CCCcEEEEecCCCeeeEee
Q 021291          229 -----EDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCN-GGISGG-ADQKIVLYNLDHSTYVLFG  290 (314)
Q Consensus       229 -----~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s-~dg~i~iw~~~~~~~~~~~  290 (314)
                           ..+.|.++|..+ .+.+..+.. ...+..+++++|++ +|++.. .++.|.+.|..+++.+..+
T Consensus       272 ~thk~~~~~V~ViD~~t-~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       272 WTHKTASRFLFVVDAKT-GKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             ccccCCCCEEEEEECCC-CeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence                 225799999998 787877764 46889999999999 777655 6788999999999887764

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.31  E-value=4.3e-09  Score=89.03  Aligned_cols=227  Identities=10%  Similarity=0.084  Sum_probs=123.4

Q ss_pred             ecCCCCceeEEEEccCCCE---EEEecCC--CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeec-CC-
Q 021291           14 LRGHRASVTDVCFHQTKPI---LFAGTTG--GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-DG-   86 (314)
Q Consensus        14 l~~h~~~v~~~~~~~~~~~---l~s~~~d--g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg-   86 (314)
                      +......+..-+|+|||+.   +++...+  ..|.+.++.+++...... ..  ......+|+|  ||+.|+..+. +| 
T Consensus       180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~-~~--g~~~~p~wSP--DG~~Laf~s~~~g~  254 (428)
T PRK01029        180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA-LQ--GNQLMPTFSP--RKKLLAFISDRYGN  254 (428)
T ss_pred             cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec-CC--CCccceEECC--CCCEEEEEECCCCC
Confidence            4444556677899999974   2244433  368888988775443322 23  2256789999  9988886543 23 


Q ss_pred             ---eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCce
Q 021291           87 ---TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY  163 (314)
Q Consensus        87 ---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (314)
                         .+.+|++..+....  ...+......                                     .....+|+|||+.+
T Consensus       255 ~di~~~~~~~~~g~~g~--~~~lt~~~~~-------------------------------------~~~~p~wSPDG~~L  295 (428)
T PRK01029        255 PDLFIQSFSLETGAIGK--PRRLLNEAFG-------------------------------------TQGNPSFSPDGTRL  295 (428)
T ss_pred             cceeEEEeecccCCCCc--ceEeecCCCC-------------------------------------CcCCeEECCCCCEE
Confidence               34446665431100  0000000000                                     00004699999877


Q ss_pred             EEEeecCcCeEEEE--ecCC-CceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecC--CcEEEEEc
Q 021291          164 MAVAGEQLSEVEIW--DLNT-AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED--GSILVWDI  238 (314)
Q Consensus       164 ~~~~g~~d~~i~vw--d~~~-~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~d--g~i~vwd~  238 (314)
                      +.+ ...+|...+|  ++.. +.....+.        .+    ........ |+||   |+.++++...+  ..|.+||+
T Consensus       296 af~-s~~~g~~~ly~~~~~~~g~~~~~lt--------~~----~~~~~~p~-wSPD---G~~Laf~~~~~g~~~I~v~dl  358 (428)
T PRK01029        296 VFV-SNKDGRPRIYIMQIDPEGQSPRLLT--------KK----YRNSSCPA-WSPD---GKKIAFCSVIKGVRQICVYDL  358 (428)
T ss_pred             EEE-ECCCCCceEEEEECcccccceEEec--------cC----CCCcccee-ECCC---CCEEEEEEcCCCCcEEEEEEC
Confidence            764 3345644444  4432 22233333        11    11234455 9998   55233344333  36999999


Q ss_pred             cCCCCceEeeecCCcceEEEEEeCCCCeEEEec-C--CCcEEEEecCCCeeeEeeeeeeecCCCceeceeecc
Q 021291          239 RNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG-A--DQKIVLYNLDHSTYVLFGIGFVCDQEGNKFGTTWHI  308 (314)
Q Consensus       239 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s-~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~w~~  308 (314)
                      .+ ++. ..+......+....|+|||+.|+..+ .  ...|.++|++.++.....     ...|......|-+
T Consensus       359 ~~-g~~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt-----~~~g~~~~p~Ws~  424 (428)
T PRK01029        359 AT-GRD-YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV-----IGSGEKRFPSWGA  424 (428)
T ss_pred             CC-CCe-EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-----cCCCcccCceecC
Confidence            86 443 34443344667899999999876433 2  356888898877643321     1334444455654

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.30  E-value=2.1e-10  Score=88.63  Aligned_cols=250  Identities=14%  Similarity=0.198  Sum_probs=153.0

Q ss_pred             CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCC-CeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCe
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ-HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (314)
                      .+++.++||.+.|++...-|...-+++.+.|.++|||--.+ ++.-..+. |.-+.++.++.+.+  +...|+.|-..|+
T Consensus        15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~-~~mP~~~~~~~y~~--e~~~L~vg~~ngt   91 (404)
T KOG1409|consen   15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIY-HYMPSPCSAMEYVS--ESRRLYVGQDNGT   91 (404)
T ss_pred             hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhh-hhCCCCceEeeeec--cceEEEEEEecce
Confidence            56788999999999999888777799999999999996433 33333332 44446799999999  8889999999999


Q ss_pred             EEEEeCCCC----CCCCCCeeeeecceeeEEEeeeeeccccccccCC-CCcceeeccCCceeeecCCCCCCceeccCC--
Q 021291           88 VKCWDIENG----GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN-EPKDCYEREVGETVDTDSLCDSKDDVPAEG--  160 (314)
Q Consensus        88 v~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  160 (314)
                      +.-+.+..-    ...+  .+..+........++.  .+........ .....-..+.+..+.....    .+...+.  
T Consensus        92 vtefs~sedfnkm~~~r--~~~~h~~~v~~~if~~--~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~----~~~~t~~~~  163 (404)
T KOG1409|consen   92 VTEFALSEDFNKMTFLK--DYLAHQARVSAIVFSL--THEWVLSTGKDKQFAWHCTESGNRLGGYNF----ETPASALQF  163 (404)
T ss_pred             EEEEEhhhhhhhcchhh--hhhhhhcceeeEEecC--CceeEEEeccccceEEEeeccCCcccceEe----eccCCCCce
Confidence            988876431    1111  0111111111111111  1110000000 0000111111110000000    0111110  


Q ss_pred             CceEEEeecCcCeEEEEecC--CCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEc
Q 021291          161 PKYMAVAGEQLSEVEIWDLN--TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI  238 (314)
Q Consensus       161 ~~~~~~~g~~d~~i~vwd~~--~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~  238 (314)
                      ....+..|...|.|.+-.+.  ....+.++.        +|    .+.+.++. |.|.   .+ .+++|..|..+.+||+
T Consensus       164 d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~--------~h----~~~~~~l~-Wd~~---~~-~LfSg~~d~~vi~wdi  226 (404)
T KOG1409|consen  164 DALYAFVGDHSGQITMLKLEQNGCQLITTFN--------GH----TGEVTCLK-WDPG---QR-LLFSGASDHSVIMWDI  226 (404)
T ss_pred             eeEEEEecccccceEEEEEeecCCceEEEEc--------Cc----ccceEEEE-EcCC---Cc-EEEeccccCceEEEec
Confidence            11122345555655554433  344566666        66    45777887 9986   33 8999999999999999


Q ss_pred             cCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCee
Q 021291          239 RNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTY  286 (314)
Q Consensus       239 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~  286 (314)
                      --......++.+|...|..+..-+.-+.|++++.||.|.+|+++..+.
T Consensus       227 gg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~  274 (404)
T KOG1409|consen  227 GGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRV  274 (404)
T ss_pred             cCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceee
Confidence            854456678889999999999977778899999999999999986543

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.28  E-value=5.1e-09  Score=86.13  Aligned_cols=257  Identities=12%  Similarity=0.145  Sum_probs=152.6

Q ss_pred             CCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEe-----ecC-----Ce
Q 021291           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ-----GRD-----GT   87 (314)
Q Consensus        18 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-----~~d-----g~   87 (314)
                      ..+++..+++++|+++|.+. +..++|++...++.+.+....    .+.++.|+|  -+++|.+=     ..+     -.
T Consensus        34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~----~~~~L~fSP--~g~yL~T~e~~~i~~~~~~~~pn  106 (566)
T KOG2315|consen   34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK----KTYDLLFSP--KGNYLLTWEPWAIYGPKNASNPN  106 (566)
T ss_pred             CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc----eeeeeeecc--cccccccccccccccCCCCCCCc
Confidence            44577889999998877655 457999999888644444332    289999999  77877652     222     34


Q ss_pred             EEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecC-------------------
Q 021291           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDS-------------------  148 (314)
Q Consensus        88 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------  148 (314)
                      +++|+++++....  .+..+........|+.+..  ...-..+.....++....+.....+                   
T Consensus       107 ~~v~~vet~~~~s--~~q~k~Q~~W~~qfs~dEs--l~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~v  182 (566)
T KOG2315|consen  107 VLVYNVETGVQRS--QIQKKMQNGWVPQFSIDES--LAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFV  182 (566)
T ss_pred             eeeeeeccceehh--heehhhhcCcccccccchh--hhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceE
Confidence            7799998843211  1111111100111111100  0000111111111111100000000                   


Q ss_pred             -------------------C---CCC-----------C--ceeccCCCceEEEeecC----------cCeEEEEecCCCc
Q 021291          149 -------------------L---CDS-----------K--DDVPAEGPKYMAVAGEQ----------LSEVEIWDLNTAE  183 (314)
Q Consensus       149 -------------------~---~~~-----------~--~~~~~~~~~~~~~~g~~----------d~~i~vwd~~~~~  183 (314)
                                         .   .|.           .  +.|++-|..+|+.+.++          +.+++++++....
T Consensus       183 AvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s  262 (566)
T KOG2315|consen  183 AVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES  262 (566)
T ss_pred             EEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce
Confidence                               0   000           0  55666666655543321          2357777776444


Q ss_pred             eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCC
Q 021291          184 RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDES  263 (314)
Q Consensus       184 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~  263 (314)
                      +...+.             ..+++.++. |+|++.  ++.++-|..=..+.|||++  +.++..+.  .++-+++-|+|.
T Consensus       263 ~~V~L~-------------k~GPVhdv~-W~~s~~--EF~VvyGfMPAkvtifnlr--~~~v~df~--egpRN~~~fnp~  322 (566)
T KOG2315|consen  263 VSVPLL-------------KEGPVHDVT-WSPSGR--EFAVVYGFMPAKVTIFNLR--GKPVFDFP--EGPRNTAFFNPH  322 (566)
T ss_pred             EEEecC-------------CCCCceEEE-ECCCCC--EEEEEEecccceEEEEcCC--CCEeEeCC--CCCccceEECCC
Confidence            444444             367899998 999832  3456778888899999999  67776664  577889999999


Q ss_pred             CCeEEEecCC---CcEEEEecCCCeeeEee-----eeeeecCCCceecee
Q 021291          264 CNGGISGGAD---QKIVLYNLDHSTYVLFG-----IGFVCDQEGNKFGTT  305 (314)
Q Consensus       264 ~~~l~s~s~d---g~i~iw~~~~~~~~~~~-----~~~~~~~~~~~~~~~  305 (314)
                      |++|+.+|.+   |.|-|||+.+.+++...     .-+..+|+|..|.+.
T Consensus       323 g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTA  372 (566)
T KOG2315|consen  323 GNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTA  372 (566)
T ss_pred             CCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEE
Confidence            9999888864   78999999998877653     335677888877663

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.28  E-value=2e-09  Score=81.67  Aligned_cols=190  Identities=14%  Similarity=0.153  Sum_probs=120.0

Q ss_pred             CCCeEEEEeCCCCeEEE--EEe-ccCCcccEEEEEEcccC-CCC-eEEEeecCCeEEEEeCCCCCCCCCCeeeeec---c
Q 021291           38 TGGELRIWDTVQHRTVS--SSW-VHSAAHGIVSVATGPSI-GLN-KVISQGRDGTVKCWDIENGGLSSNPSLTIKT---N  109 (314)
Q Consensus        38 ~dg~v~iwd~~~~~~~~--~~~-~~~~~~~v~~~~~~~~~-~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~---~  109 (314)
                      ..|.+.+|++++.+...  .++ ...  +.+..|.|.... ++. .++-+..+|.|.++.........    .+..   .
T Consensus        44 R~Gkl~Lys~~d~~~~~l~~~q~~dt--s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~----~L~~ls~~  117 (339)
T KOG0280|consen   44 RSGKLHLYSLEDMKLSPLDTLQCTDT--STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSV----HLRGLSSK  117 (339)
T ss_pred             eccceEEEeecccccCccceeeeecc--cccceeeeeeccCCccceeeeccccceEEEEeeccceeee----eecccchh
Confidence            35678999987655332  222 122  447788887532 344 45567778899998765432110    1111   0


Q ss_pred             eeeEE-EeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceee--
Q 021291          110 SYHFC-KLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCT--  186 (314)
Q Consensus       110 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~--  186 (314)
                      ..... .++                                    +.|++.+..++  ++..+|.+.+-+........  
T Consensus       118 ki~~~~~ls------------------------------------lD~~~~~~~i~--vs~s~G~~~~v~~t~~~le~vq  159 (339)
T KOG0280|consen  118 KISVVEALS------------------------------------LDISTSGTKIF--VSDSRGSISGVYETEMVLEKVQ  159 (339)
T ss_pred             hhhheeeeE------------------------------------EEeeccCceEE--EEcCCCcEEEEecceeeeeecc
Confidence            00000 111                                    45777777654  35457888855544443332  


Q ss_pred             eecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEe-eecCCcceEEEEEe-CCC
Q 021291          187 RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA-MKVHLEPVLCLSID-ESC  264 (314)
Q Consensus       187 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~-~~~h~~~v~~~~~~-~~~  264 (314)
                      .++        +|..    .++... |+-.+++   ++++|+.|+.+..||+|.+++.+.. .+.|...|.++.-+ |.+
T Consensus       160 ~wk--------~He~----E~Wta~-f~~~~pn---lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~  223 (339)
T KOG0280|consen  160 TWK--------VHEF----EAWTAK-FSDKEPN---LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKP  223 (339)
T ss_pred             ccc--------ccce----eeeeee-cccCCCc---eEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCC
Confidence            444        5533    455554 7665442   9999999999999999976766655 66789999999885 467


Q ss_pred             CeEEEecCCCcEEEEecC-CCeee
Q 021291          265 NGGISGGADQKIVLYNLD-HSTYV  287 (314)
Q Consensus       265 ~~l~s~s~dg~i~iw~~~-~~~~~  287 (314)
                      .+|+||+.|-.|++||.+ -++.+
T Consensus       224 ~~I~TGsYDe~i~~~DtRnm~kPl  247 (339)
T KOG0280|consen  224 TYIATGSYDECIRVLDTRNMGKPL  247 (339)
T ss_pred             ceEEEeccccceeeeehhcccCcc
Confidence            799999999999999998 44444

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.27  E-value=3.1e-10  Score=85.90  Aligned_cols=200  Identities=16%  Similarity=0.147  Sum_probs=129.1

Q ss_pred             eeEEEEccCCCEEEEecCCCeEEEEeCCCCeE--EEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCC-
Q 021291           21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHRT--VSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG-   97 (314)
Q Consensus        21 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-   97 (314)
                      ..++.|++.+..++++-.+|.+.+-+......  .+.++.|+.+  ++...|+.. +.+.+++|++|+.+..||++... 
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E--~Wta~f~~~-~pnlvytGgDD~~l~~~D~R~p~~  200 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFE--AWTAKFSDK-EPNLVYTGGDDGSLSCWDIRIPKT  200 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccccccee--eeeeecccC-CCceEEecCCCceEEEEEecCCcc
Confidence            35678888888899999999999666555443  3478889855  899999874 44789999999999999999332 


Q ss_pred             CCCCCeee-eecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEE
Q 021291           98 LSSNPSLT-IKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI  176 (314)
Q Consensus        98 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v  176 (314)
                      .    ++. .+.+....+.+.                                      -+|.....+ ++|+.|..|++
T Consensus       201 ~----i~~n~kvH~~GV~SI~--------------------------------------ss~~~~~~I-~TGsYDe~i~~  237 (339)
T KOG0280|consen  201 F----IWHNSKVHTSGVVSIY--------------------------------------SSPPKPTYI-ATGSYDECIRV  237 (339)
T ss_pred             e----eeecceeeecceEEEe--------------------------------------cCCCCCceE-EEeccccceee
Confidence            2    111 122222222211                                      223333344 38999999999


Q ss_pred             EecCC-CceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCC-C---ceEeeecC
Q 021291          177 WDLNT-AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG-I---PLTAMKVH  251 (314)
Q Consensus       177 wd~~~-~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~-~---~~~~~~~h  251 (314)
                      ||.|+ ++++..-+             ..+.++.+. ++|... +  .+++++.-.-.+|-+..... +   .....+.|
T Consensus       238 ~DtRnm~kPl~~~~-------------v~GGVWRi~-~~p~~~-~--~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~h  300 (339)
T KOG0280|consen  238 LDTRNMGKPLFKAK-------------VGGGVWRIK-HHPEIF-H--RLLAACMHNGAKILDSSDKVLEFQIVLPSDKIH  300 (339)
T ss_pred             eehhcccCccccCc-------------cccceEEEE-ecchhh-h--HHHHHHHhcCceEEEecccccchheeeeccccc
Confidence            99994 55544333             457889997 998733 2  23444444456777765421 2   34455677


Q ss_pred             CcceEEEEEeCCCCeEEEec-CCCcEE-EEecCC
Q 021291          252 LEPVLCLSIDESCNGGISGG-ADQKIV-LYNLDH  283 (314)
Q Consensus       252 ~~~v~~~~~~~~~~~l~s~s-~dg~i~-iw~~~~  283 (314)
                      .+-...-.|+....+|+|++ .|+.++ +|-.-+
T Consensus       301 dSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t  334 (339)
T KOG0280|consen  301 DSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT  334 (339)
T ss_pred             cceeeccccccccceeeeeeccccceeeeeeecc
Confidence            77777777755555788876 466644 665443

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.27  E-value=1.9e-10  Score=94.59  Aligned_cols=207  Identities=14%  Similarity=0.164  Sum_probs=139.6

Q ss_pred             EEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCC
Q 021291           23 DVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNP  102 (314)
Q Consensus        23 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  102 (314)
                      .++++.-.--|+.++....|+-++++.|+.+..+.....  .++++..++  -..+|++|+.+|.|..||.+....+.  
T Consensus       138 Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~--~lN~v~in~--~hgLla~Gt~~g~VEfwDpR~ksrv~--  211 (703)
T KOG2321|consen  138 DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSG--ELNVVSINE--EHGLLACGTEDGVVEFWDPRDKSRVG--  211 (703)
T ss_pred             cccccCCCccEEEeecCcceEEEEccccccccccccccc--cceeeeecC--ccceEEecccCceEEEecchhhhhhe--
Confidence            455554222244444455799999999999998887774  499999999  77899999999999999999876544  


Q ss_pred             eeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCC
Q 021291          103 SLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTA  182 (314)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~  182 (314)
                      .+..... +...    .+..                        ..+.-..+.|+.+|-.  ++.|+.+|.+.|||++..
T Consensus       212 ~l~~~~~-v~s~----pg~~------------------------~~~svTal~F~d~gL~--~aVGts~G~v~iyDLRa~  260 (703)
T KOG2321|consen  212 TLDAASS-VNSH----PGGD------------------------AAPSVTALKFRDDGLH--VAVGTSTGSVLIYDLRAS  260 (703)
T ss_pred             eeecccc-cCCC----cccc------------------------ccCcceEEEecCCcee--EEeeccCCcEEEEEcccC
Confidence            1111111 0000    0000                        0000000556666533  346777899999999998


Q ss_pred             ceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeC
Q 021291          183 ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDE  262 (314)
Q Consensus       183 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~  262 (314)
                      +++..-.         |..  ..++..+. |.+.+  ++..+++. ....++|||-.+ +++...+.. ...++.+++-|
T Consensus       261 ~pl~~kd---------h~~--e~pi~~l~-~~~~~--~q~~v~S~-Dk~~~kiWd~~~-Gk~~asiEp-t~~lND~C~~p  323 (703)
T KOG2321|consen  261 KPLLVKD---------HGY--ELPIKKLD-WQDTD--QQNKVVSM-DKRILKIWDECT-GKPMASIEP-TSDLNDFCFVP  323 (703)
T ss_pred             Cceeecc---------cCC--ccceeeec-ccccC--CCceEEec-chHHhhhccccc-CCceeeccc-cCCcCceeeec
Confidence            8776544         433  34666776 87762  33245554 456899999998 888888775 45599999988


Q ss_pred             CCCeEEEecCCCcEEEEecCC
Q 021291          263 SCNGGISGGADQKIVLYNLDH  283 (314)
Q Consensus       263 ~~~~l~s~s~dg~i~iw~~~~  283 (314)
                      ++-+++++-.+..+..|=+..
T Consensus       324 ~sGm~f~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  324 GSGMFFTANESSKMHTYYIPS  344 (703)
T ss_pred             CCceEEEecCCCcceeEEccc
Confidence            888899998888887776554

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.24  E-value=9e-09  Score=84.72  Aligned_cols=234  Identities=16%  Similarity=0.222  Sum_probs=140.5

Q ss_pred             eEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEE-----eecCCeEEEEeCCCC
Q 021291           22 TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS-----QGRDGTVKCWDIENG   96 (314)
Q Consensus        22 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s-----~~~dg~v~iwd~~~~   96 (314)
                      ++..|+.|..+.| =-..+.+.+|++...+.+. -+.|.  ..|..+.++|.+....+++     .+.-..|+||.....
T Consensus       129 W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~~-~kl~~--~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~  204 (566)
T KOG2315|consen  129 WVPQFSIDESLAA-RLVSNEVQFYDLGSFKTIQ-HKLSV--SGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEE  204 (566)
T ss_pred             cccccccchhhhh-hhhcceEEEEecCCcccee-eeeec--cceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccc
Confidence            5788888775433 3345679999987643322 12344  4499999998433344443     345568999988632


Q ss_pred             CCCCCCeeeeec---ceeeEEEeeeeeccc-----------cccccCCCCcceeeccCCceeeecCCCCCC---ceeccC
Q 021291           97 GLSSNPSLTIKT---NSYHFCKLSLVKEPY-----------ANAKQANEPKDCYEREVGETVDTDSLCDSK---DDVPAE  159 (314)
Q Consensus        97 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  159 (314)
                      ..-.  ....++   .......+...+...           ...-........+.+. +......+.....   +.|+|+
T Consensus       205 ~~~~--~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~L~k~GPVhdv~W~~s  281 (566)
T KOG2315|consen  205 GQHQ--PVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVPLLKEGPVHDVTWSPS  281 (566)
T ss_pred             cccc--hhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-CceEEEecCCCCCceEEEECCC
Confidence            2111  111111   011111111111110           0011111122223333 3333333333333   899999


Q ss_pred             CCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEee--cCCcEEEEE
Q 021291          160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY--EDGSILVWD  237 (314)
Q Consensus       160 ~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~--~dg~i~vwd  237 (314)
                      +..+.++-|..--++.|||++ +..+..+.              .+.-.++- |+|.   |+.++++|.  ..|.|-|||
T Consensus       282 ~~EF~VvyGfMPAkvtifnlr-~~~v~df~--------------egpRN~~~-fnp~---g~ii~lAGFGNL~G~mEvwD  342 (566)
T KOG2315|consen  282 GREFAVVYGFMPAKVTIFNLR-GKPVFDFP--------------EGPRNTAF-FNPH---GNIILLAGFGNLPGDMEVWD  342 (566)
T ss_pred             CCEEEEEEecccceEEEEcCC-CCEeEeCC--------------CCCccceE-ECCC---CCEEEEeecCCCCCceEEEe
Confidence            999998889888899999987 56666665              33455555 9998   664555553  348999999


Q ss_pred             ccCCCCceEeeecCCcceEEEEEeCCCCeEEEecC------CCcEEEEecCCC
Q 021291          238 IRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA------DQKIVLYNLDHS  284 (314)
Q Consensus       238 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~------dg~i~iw~~~~~  284 (314)
                      ..+ .+.+..+..-  .-+-+.|+|||++++|+..      |+.++||++...
T Consensus       343 v~n-~K~i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~  392 (566)
T KOG2315|consen  343 VPN-RKLIAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS  392 (566)
T ss_pred             ccc-hhhccccccC--CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence            998 8888877753  3456799999999988875      788999998754

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.23  E-value=2.3e-09  Score=82.65  Aligned_cols=102  Identities=11%  Similarity=0.086  Sum_probs=71.8

Q ss_pred             ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcE
Q 021291          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI  233 (314)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i  233 (314)
                      ++|++|..++.......-+.+-+||++..+....+..             ...+.+.. |+|..+    .++.+.....+
T Consensus       324 lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQ-------------k~piraf~-WdP~~p----rL~vctg~srL  385 (447)
T KOG4497|consen  324 LAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQ-------------KHPIRAFE-WDPGRP----RLVVCTGKSRL  385 (447)
T ss_pred             eeecCCceEEeeecCCCCceEEEEechhhhhhhhhhh-------------ccceeEEE-eCCCCc----eEEEEcCCceE
Confidence            9999998755432333345789999998887666652             34677776 999755    45555556679


Q ss_pred             EEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCc
Q 021291          234 LVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQK  275 (314)
Q Consensus       234 ~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~  275 (314)
                      ++|...-  ...-...+..-.|..+.|..+|..++..+.|..
T Consensus       386 Y~W~psg--~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDaf  425 (447)
T KOG4497|consen  386 YFWAPSG--PRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAF  425 (447)
T ss_pred             EEEcCCC--ceEEecCCCCceeeeEEecCCCcEEEEEcCCce
Confidence            9998873  323233333468999999999999999998864

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.23  E-value=5e-09  Score=89.30  Aligned_cols=195  Identities=15%  Similarity=0.093  Sum_probs=111.2

Q ss_pred             eEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC-C--eEEEEeCCCCCCCCCCeeeeecceeeEEEee
Q 021291           41 ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD-G--TVKCWDIENGGLSSNPSLTIKTNSYHFCKLS  117 (314)
Q Consensus        41 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  117 (314)
                      .|.++|.+.... +.+....  ..+.+..|+|  ||+.|+..+.+ +  .|.+||+.+++...  +........      
T Consensus       199 ~l~i~d~dG~~~-~~l~~~~--~~~~~p~wSP--DG~~La~~s~~~g~~~L~~~dl~tg~~~~--lt~~~g~~~------  265 (448)
T PRK04792        199 QLMIADYDGYNE-QMLLRSP--EPLMSPAWSP--DGRKLAYVSFENRKAEIFVQDIYTQVREK--VTSFPGING------  265 (448)
T ss_pred             EEEEEeCCCCCc-eEeecCC--CcccCceECC--CCCEEEEEEecCCCcEEEEEECCCCCeEE--ecCCCCCcC------
Confidence            677778655433 3343344  4588999999  99988866543 3  58888988765311  111110000      


Q ss_pred             eeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcC--eEEEEecCCCceeeeecccccCC
Q 021291          118 LVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS--EVEIWDLNTAERCTRLHQNSCGG  195 (314)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~--~i~vwd~~~~~~~~~~~~~~~~~  195 (314)
                                                         ..+|+|+|+.++++ .+.++  .|+++|+.+++.. .+.      
T Consensus       266 -----------------------------------~~~wSPDG~~La~~-~~~~g~~~Iy~~dl~tg~~~-~lt------  302 (448)
T PRK04792        266 -----------------------------------APRFSPDGKKLALV-LSKDGQPEIYVVDIATKALT-RIT------  302 (448)
T ss_pred             -----------------------------------CeeECCCCCEEEEE-EeCCCCeEEEEEECCCCCeE-ECc------
Confidence                                               04599999987654 34455  4888898877643 333      


Q ss_pred             CCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCC--cEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecC-
Q 021291          196 SPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG--SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA-  272 (314)
Q Consensus       196 ~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg--~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-  272 (314)
                        .+    ........ |+||   |+.++++...++  .|+++|+.+ ++. ..+..........+|+|+|++|+..+. 
T Consensus       303 --~~----~~~~~~p~-wSpD---G~~I~f~s~~~g~~~Iy~~dl~~-g~~-~~Lt~~g~~~~~~~~SpDG~~l~~~~~~  370 (448)
T PRK04792        303 --RH----RAIDTEPS-WHPD---GKSLIFTSERGGKPQIYRVNLAS-GKV-SRLTFEGEQNLGGSITPDGRSMIMVNRT  370 (448)
T ss_pred             --cC----CCCccceE-ECCC---CCEEEEEECCCCCceEEEEECCC-CCE-EEEecCCCCCcCeeECCCCCEEEEEEec
Confidence              12    11233444 9998   553445544444  466667765 433 333322333445789999998866654 


Q ss_pred             CC--cEEEEecCCCeeeEee-----eeeeecCCCceec
Q 021291          273 DQ--KIVLYNLDHSTYVLFG-----IGFVCDQEGNKFG  303 (314)
Q Consensus       273 dg--~i~iw~~~~~~~~~~~-----~~~~~~~~~~~~~  303 (314)
                      ++  .|.++|+++++.....     ...+++|+|..+.
T Consensus       371 ~g~~~I~~~dl~~g~~~~lt~~~~d~~ps~spdG~~I~  408 (448)
T PRK04792        371 NGKFNIARQDLETGAMQVLTSTRLDESPSVAPNGTMVI  408 (448)
T ss_pred             CCceEEEEEECCCCCeEEccCCCCCCCceECCCCCEEE
Confidence            34  3555677776543211     1124667776543

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.23  E-value=2.6e-11  Score=65.56  Aligned_cols=38  Identities=29%  Similarity=0.711  Sum_probs=36.6

Q ss_pred             CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEe
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWD   46 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd   46 (314)
                      ++++++++|.+.|++|+|+|++++|++|+.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            57899999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.21  E-value=1.2e-08  Score=87.16  Aligned_cols=195  Identities=11%  Similarity=0.051  Sum_probs=114.5

Q ss_pred             eEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC---CeEEEEeCCCCCCCCCCeeeeecceeeEEEee
Q 021291           41 ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD---GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLS  117 (314)
Q Consensus        41 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  117 (314)
                      .|.++|.+.+. ...+..+.  ..+....|+|  ||+.|+..+.+   ..|.+||+.+++...  +......  ..    
T Consensus       180 ~l~~~d~~g~~-~~~l~~~~--~~~~~p~wSp--DG~~la~~s~~~~~~~l~~~~l~~g~~~~--l~~~~g~--~~----  246 (430)
T PRK00178        180 TLQRSDYDGAR-AVTLLQSR--EPILSPRWSP--DGKRIAYVSFEQKRPRIFVQNLDTGRREQ--ITNFEGL--NG----  246 (430)
T ss_pred             EEEEECCCCCC-ceEEecCC--CceeeeeECC--CCCEEEEEEcCCCCCEEEEEECCCCCEEE--ccCCCCC--cC----
Confidence            57888876544 34444454  4489999999  99998876543   368999998775321  1111100  00    


Q ss_pred             eeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcC--eEEEEecCCCceeeeecccccCC
Q 021291          118 LVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS--EVEIWDLNTAERCTRLHQNSCGG  195 (314)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~--~i~vwd~~~~~~~~~~~~~~~~~  195 (314)
                                                         ..+|+|+|+.++++ .+.++  .|++||+.+++.. .+.      
T Consensus       247 -----------------------------------~~~~SpDG~~la~~-~~~~g~~~Iy~~d~~~~~~~-~lt------  283 (430)
T PRK00178        247 -----------------------------------APAWSPDGSKLAFV-LSKDGNPEIYVMDLASRQLS-RVT------  283 (430)
T ss_pred             -----------------------------------CeEECCCCCEEEEE-EccCCCceEEEEECCCCCeE-Ecc------
Confidence                                               04599999877653 33333  6888999887643 333      


Q ss_pred             CCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCC--cEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCC
Q 021291          196 SPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG--SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD  273 (314)
Q Consensus       196 ~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg--~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d  273 (314)
                        .+    ........ |+|+   |+.++++...++  .|+++|+.. ++. ..+...........|+|+|++|+..+.+
T Consensus       284 --~~----~~~~~~~~-~spD---g~~i~f~s~~~g~~~iy~~d~~~-g~~-~~lt~~~~~~~~~~~Spdg~~i~~~~~~  351 (430)
T PRK00178        284 --NH----PAIDTEPF-WGKD---GRTLYFTSDRGGKPQIYKVNVNG-GRA-ERVTFVGNYNARPRLSADGKTLVMVHRQ  351 (430)
T ss_pred             --cC----CCCcCCeE-ECCC---CCEEEEEECCCCCceEEEEECCC-CCE-EEeecCCCCccceEECCCCCEEEEEEcc
Confidence              12    11233344 9998   553444544444  577777765 443 3333222334457899999998766543


Q ss_pred             -C--cEEEEecCCCeeeEee-----eeeeecCCCceec
Q 021291          274 -Q--KIVLYNLDHSTYVLFG-----IGFVCDQEGNKFG  303 (314)
Q Consensus       274 -g--~i~iw~~~~~~~~~~~-----~~~~~~~~~~~~~  303 (314)
                       +  .|.+||+.+++.....     ...+++|+|..+.
T Consensus       352 ~~~~~l~~~dl~tg~~~~lt~~~~~~~p~~spdg~~i~  389 (430)
T PRK00178        352 DGNFHVAAQDLQRGSVRILTDTSLDESPSVAPNGTMLI  389 (430)
T ss_pred             CCceEEEEEECCCCCEEEccCCCCCCCceECCCCCEEE
Confidence             3  4888898877543321     1224556665443

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.20  E-value=1.3e-09  Score=95.59  Aligned_cols=103  Identities=17%  Similarity=0.230  Sum_probs=82.5

Q ss_pred             ceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCC
Q 021291          162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP  241 (314)
Q Consensus       162 ~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~  241 (314)
                      .+.+++|+--+.|.+|++..-+....+.        +|    .+.+.++. |+-+   |+ ++++.++|.++++|++.+.
T Consensus       145 ~~~i~~gsv~~~iivW~~~~dn~p~~l~--------GH----eG~iF~i~-~s~d---g~-~i~s~SdDRsiRlW~i~s~  207 (967)
T KOG0974|consen  145 ELYIASGSVFGEIIVWKPHEDNKPIRLK--------GH----EGSIFSIV-TSLD---GR-YIASVSDDRSIRLWPIDSR  207 (967)
T ss_pred             EEEEEeccccccEEEEeccccCCcceec--------cc----CCceEEEE-EccC---Cc-EEEEEecCcceeeeecccc
Confidence            3455567777999999988433333344        77    66899988 9877   66 9999999999999999984


Q ss_pred             CCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCC
Q 021291          242 GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH  283 (314)
Q Consensus       242 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~  283 (314)
                      .......-+|+..|+.+.|.++  .++|++.|.+.++|+.+.
T Consensus       208 ~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~  247 (967)
T KOG0974|consen  208 EVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNG  247 (967)
T ss_pred             cccCcccccccceeEEEEeccc--eeEEeccceEEEEEeccc
Confidence            4444467799999999999999  899999999999996553

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.17  E-value=3e-07  Score=72.19  Aligned_cols=258  Identities=15%  Similarity=0.126  Sum_probs=149.3

Q ss_pred             CCCceeEEEEccCCCEEEEecC---CCeEEEEeCCC--CeEEEEEeccCCcccEEEEEEcccCCCCeEEEeec-CCeEEE
Q 021291           17 HRASVTDVCFHQTKPILFAGTT---GGELRIWDTVQ--HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-DGTVKC   90 (314)
Q Consensus        17 h~~~v~~~~~~~~~~~l~s~~~---dg~v~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~v~i   90 (314)
                      +.+.++-|+|+|++++|.++-.   +|.|..|.++.  |+....-+......+-..+++++  ++++++++.. .|.|.+
T Consensus        38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~--~g~~vf~AnY~~g~v~v  115 (346)
T COG2706          38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE--DGRFVFVANYHSGSVSV  115 (346)
T ss_pred             ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC--CCCEEEEEEccCceEEE
Confidence            4566788999999999988755   47788887764  44322211111112347899999  9999998876 589999


Q ss_pred             EeCCCCCCCCCCeeee-ecce----------eeEEEeeeeeccccccccCCCCcceeeccCCceeee---cC-CCCCC--
Q 021291           91 WDIENGGLSSNPSLTI-KTNS----------YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDT---DS-LCDSK--  153 (314)
Q Consensus        91 wd~~~~~~~~~~~~~~-~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~--  153 (314)
                      +-++....+..++-.. +...          .+...+.+........-.......++++..+.....   .+ ++...  
T Consensus       116 ~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRH  195 (346)
T COG2706         116 YPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRH  195 (346)
T ss_pred             EEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcce
Confidence            9996633222221111 1111          233334444333322223333344455554331111   11 11111  


Q ss_pred             ceeccCCCceEEEeecCcCeEEEEecCCC-ceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEe-ecCC
Q 021291          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTA-ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG-YEDG  231 (314)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g-~~dg  231 (314)
                      +.|+|+++...+ ....+++|.+|..... ..+..++.....+. ...  ......++. .+||   |+ +|.++ -...
T Consensus       196 i~FHpn~k~aY~-v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~-dF~--g~~~~aaIh-is~d---Gr-FLYasNRg~d  266 (346)
T COG2706         196 IVFHPNGKYAYL-VNELNSTVDVLEYNPAVGKFEELQTIDTLPE-DFT--GTNWAAAIH-ISPD---GR-FLYASNRGHD  266 (346)
T ss_pred             EEEcCCCcEEEE-EeccCCEEEEEEEcCCCceEEEeeeeccCcc-ccC--CCCceeEEE-ECCC---CC-EEEEecCCCC
Confidence            999999987776 4667899999998763 22222221111110 121  233455666 8888   77 55444 3445


Q ss_pred             cEEEEEccCCCCceEeee---cCCcceEEEEEeCCCCeEEEecCC-CcEEEEecCCCe
Q 021291          232 SILVWDIRNPGIPLTAMK---VHLEPVLCLSIDESCNGGISGGAD-QKIVLYNLDHST  285 (314)
Q Consensus       232 ~i~vwd~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~s~d-g~i~iw~~~~~~  285 (314)
                      .|.+|.+...+..+....   .+...-....|++.+++|+.+.+| ..|.+|..+...
T Consensus       267 sI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T  324 (346)
T COG2706         267 SIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET  324 (346)
T ss_pred             eEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence            788888876444343332   334456889999999999888875 468888776443

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.17  E-value=5.1e-09  Score=81.18  Aligned_cols=195  Identities=15%  Similarity=0.197  Sum_probs=117.6

Q ss_pred             CCceeEEEEccCCCEEEEecCCCeEEEEeCCC----CeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeC
Q 021291           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQ----HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI   93 (314)
Q Consensus        18 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~   93 (314)
                      ..+++++++.++-..|+.|-..|++.-+.+..    ...++....|.  .+|..+-|+.  ....+++.+.|..+.---.
T Consensus        68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~--~~v~~~if~~--~~e~V~s~~~dk~~~~hc~  143 (404)
T KOG1409|consen   68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQ--ARVSAIVFSL--THEWVLSTGKDKQFAWHCT  143 (404)
T ss_pred             CCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhh--cceeeEEecC--CceeEEEeccccceEEEee
Confidence            46789999999999999999999999887543    34455556677  5599999988  7789999999977755444


Q ss_pred             CCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccC-CceeeecCCCCCC----ceeccCCCceEEEee
Q 021291           94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREV-GETVDTDSLCDSK----DDVPAEGPKYMAVAG  168 (314)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~g  168 (314)
                      +.+.....-.+.-...... +  .+.   ........+......+.. .-.+...+.+|..    ++|.+....+  .+|
T Consensus       144 e~~~~lg~Y~~~~~~t~~~-~--d~~---~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~L--fSg  215 (404)
T KOG1409|consen  144 ESGNRLGGYNFETPASALQ-F--DAL---YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLL--FSG  215 (404)
T ss_pred             ccCCcccceEeeccCCCCc-e--eeE---EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEE--Eec
Confidence            5443322111111110000 0  000   111111222222233322 2244555667766    6676665433  378


Q ss_pred             cCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccC
Q 021291          169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (314)
Q Consensus       169 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~  240 (314)
                      ..|..+.+||+-..+-+.-...       +|...    +..+. +.+.   -+ .+.+++.||.|.+||.+.
T Consensus       216 ~~d~~vi~wdigg~~g~~~el~-------gh~~k----V~~l~-~~~~---t~-~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  216 ASDHSVIMWDIGGRKGTAYELQ-------GHNDK----VQALS-YAQH---TR-QLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             cccCceEEEeccCCcceeeeec-------cchhh----hhhhh-hhhh---he-eeeeccCCCeEEEEeccc
Confidence            8899999999976554332221       66443    33333 4433   22 789999999999999864

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.16  E-value=1.9e-09  Score=80.40  Aligned_cols=210  Identities=15%  Similarity=0.144  Sum_probs=111.6

Q ss_pred             EecCCCC-ceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccC--------CCCeEEEee
Q 021291           13 VLRGHRA-SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSI--------GLNKVISQG   83 (314)
Q Consensus        13 ~l~~h~~-~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------~~~~l~s~~   83 (314)
                      ...+|.+ .|+.+.++.+ ..|+++..++.+......++.+....+.....++..+++.+..+        .++.++++.
T Consensus        30 ~i~~~~d~~~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~  108 (319)
T KOG4714|consen   30 EIMQHADVKLSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGY  108 (319)
T ss_pred             hcccccceEEEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecC
Confidence            3334443 2556666643 46788888887777766555443322222111223333332110        247899999


Q ss_pred             cCCeEEEEeCCCCCCCCCCeeeeecceeeEEEee---eeeccccccccCCCCcceeeccCCceeeecC---CCCCCceec
Q 021291           84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLS---LVKEPYANAKQANEPKDCYEREVGETVDTDS---LCDSKDDVP  157 (314)
Q Consensus        84 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  157 (314)
                      .||.+.+++.+.-......+-..+......+.+.   ....+.......-.....+.+++........   ..-..++-+
T Consensus       109 ~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~h  188 (319)
T KOG4714|consen  109 ADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSH  188 (319)
T ss_pred             CCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCC
Confidence            9999999998762111100101111111111111   0000000111111112222333222211111   111116777


Q ss_pred             cCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEE
Q 021291          158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD  237 (314)
Q Consensus       158 ~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd  237 (314)
                      |..+++++ +|+.||.+-+||.+....+..+-.       .|    +..++.+. |+|..++   .|+++++||.+..||
T Consensus       189 p~qq~~v~-cgt~dg~~~l~d~rn~~~p~S~l~-------ah----k~~i~eV~-FHpk~p~---~Lft~sedGslw~wd  252 (319)
T KOG4714|consen  189 PAQQHLVC-CGTDDGIVGLWDARNVAMPVSLLK-------AH----KAEIWEVH-FHPKNPE---HLFTCSEDGSLWHWD  252 (319)
T ss_pred             cccccEEE-EecCCCeEEEEEcccccchHHHHH-------Hh----hhhhhhee-ccCCCch---heeEecCCCcEEEEc
Confidence            88877765 788899999999998765544432       55    44677777 9998653   799999999999999


Q ss_pred             cc
Q 021291          238 IR  239 (314)
Q Consensus       238 ~~  239 (314)
                      ..
T Consensus       253 as  254 (319)
T KOG4714|consen  253 AS  254 (319)
T ss_pred             CC
Confidence            87

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.15  E-value=3.8e-10  Score=91.09  Aligned_cols=237  Identities=14%  Similarity=0.089  Sum_probs=130.4

Q ss_pred             EEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccc-----ccccc
Q 021291           54 SSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY-----ANAKQ  128 (314)
Q Consensus        54 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~  128 (314)
                      ..+..|.  +.|..|.|+.  .|..|++++.|..|.+||...+....    .+..... ...|...+.+.     .....
T Consensus       136 ~kL~~H~--GcVntV~FN~--~Gd~l~SgSDD~~vv~WdW~~~~~~l----~f~SGH~-~NvfQaKFiP~s~d~ti~~~s  206 (559)
T KOG1334|consen  136 KKLNKHK--GCVNTVHFNQ--RGDVLASGSDDLQVVVWDWVSGSPKL----SFESGHC-NNVFQAKFIPFSGDRTIVTSS  206 (559)
T ss_pred             hcccCCC--Cccceeeecc--cCceeeccCccceEEeehhhccCccc----ccccccc-cchhhhhccCCCCCcCceecc
Confidence            4556777  4599999999  99999999999999999998775422    2221110 01111111111     11111


Q ss_pred             CCCCcceeec-cCCcee-eecCCCCCC----ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccc---c----CC
Q 021291          129 ANEPKDCYER-EVGETV-DTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNS---C----GG  195 (314)
Q Consensus       129 ~~~~~~~~~~-~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~---~----~~  195 (314)
                      ..+....-.+ ..+... ...+..|.+    ++.-|+..+.+.+ ++.|+.+.-+|++.......+....   .    ..
T Consensus       207 ~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S-~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~  285 (559)
T KOG1334|consen  207 RDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLS-CGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLY  285 (559)
T ss_pred             ccCceeeeeeccccceecceecccccCccceeeecCCCCCcccc-cccccceeeeeeccCCccceeeeeccCCccceeee
Confidence            1122222222 112111 222333433    8888888887774 5558999999998765433222000   0    00


Q ss_pred             C--------------------------CCcCCCCCc----------------eeeeEEEecCCCCCCceEEEEeecCCcE
Q 021291          196 S--------------------------PNFSSKGRG----------------MCMAVQAYLPSKSQGFVNVLAGYEDGSI  233 (314)
Q Consensus       196 ~--------------------------~~h~~~~~~----------------~~~~~~~~~p~~~~g~~~l~~g~~dg~i  233 (314)
                      .                          ..+..+..+                .|+++. |+.++.    -+++...|-.|
T Consensus       286 ~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~-Ysh~~s----ElLaSYnDe~I  360 (559)
T KOG1334|consen  286 TIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLV-YSHDGS----ELLASYNDEDI  360 (559)
T ss_pred             eEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEE-ecCCcc----ceeeeecccce
Confidence            0                          000011111                234444 554422    34455556667


Q ss_pred             EEEEccCC-C----------CceEe-eecCCc--ceEEEEE-eCCCCeEEEecCCCcEEEEecCCCeeeEe-------ee
Q 021291          234 LVWDIRNP-G----------IPLTA-MKVHLE--PVLCLSI-DESCNGGISGGADQKIVLYNLDHSTYVLF-------GI  291 (314)
Q Consensus       234 ~vwd~~~~-~----------~~~~~-~~~h~~--~v~~~~~-~~~~~~l~s~s~dg~i~iw~~~~~~~~~~-------~~  291 (314)
                      +++.-... +          ..+.. +++|..  .|..+-| .|...|+++||.-|.|.||+-.+++.+..       ..
T Consensus       361 YLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVN  440 (559)
T KOG1334|consen  361 YLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVN  440 (559)
T ss_pred             EEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEe
Confidence            77743210 1          12222 677754  5888888 88899999999999999999988876654       23


Q ss_pred             eeeecCCCceecee
Q 021291          292 GFVCDQEGNKFGTT  305 (314)
Q Consensus       292 ~~~~~~~~~~~~~~  305 (314)
                      .+-++|--.+++++
T Consensus       441 CLEpHP~~PvLAsS  454 (559)
T KOG1334|consen  441 CLEPHPHLPVLASS  454 (559)
T ss_pred             ccCCCCCCchhhcc
Confidence            34455655555553

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.13  E-value=1.4e-07  Score=77.85  Aligned_cols=248  Identities=11%  Similarity=0.114  Sum_probs=140.5

Q ss_pred             EEEecCC----CeEEEEeC--CCCeEE--EEEeccCCcccEEEEEEcccCCCCeEEEeec----CCeEEEEeCCCC--CC
Q 021291           33 LFAGTTG----GELRIWDT--VQHRTV--SSSWVHSAAHGIVSVATGPSIGLNKVISQGR----DGTVKCWDIENG--GL   98 (314)
Q Consensus        33 l~s~~~d----g~v~iwd~--~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~----dg~v~iwd~~~~--~~   98 (314)
                      ++.|+..    +.|.+|++  ++++..  ......   .....++++|  ++++|+++..    ++.|..|++...  ++
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~---~~Ps~l~~~~--~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L   76 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEG---ENPSWLAVSP--DGRRLYVVNEGSGDSGGVSSYRIDPDTGTL   76 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEES---SSECCEEE-T--TSSEEEEEETTSSTTTEEEEEEEETTTTEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCC---CCCceEEEEe--CCCEEEEEEccccCCCCEEEEEECCCccee
Confidence            4555555    68999888  444432  222222   3367889999  8899998876    578999998764  32


Q ss_pred             CCCCeeeeecceeeEEEe--eeeeccccccccCCCCcceeeccCCceeeec----------------CCCCCC-ceeccC
Q 021291           99 SSNPSLTIKTNSYHFCKL--SLVKEPYANAKQANEPKDCYEREVGETVDTD----------------SLCDSK-DDVPAE  159 (314)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~-~~~~~~  159 (314)
                      ..  +-.........|.+  +............++...++.+.....+...                ...|.. +.++|+
T Consensus        77 ~~--~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pd  154 (345)
T PF10282_consen   77 TL--LNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPD  154 (345)
T ss_dssp             EE--EEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TT
T ss_pred             EE--eeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCC
Confidence            11  22222222223333  3344444455556677777777653211111                111222 889999


Q ss_pred             CCceEEEeecCcCeEEEEecCCCc--ee--eeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEE
Q 021291          160 GPKYMAVAGEQLSEVEIWDLNTAE--RC--TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV  235 (314)
Q Consensus       160 ~~~~~~~~g~~d~~i~vwd~~~~~--~~--~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~v  235 (314)
                      +++++++--+ ...|.+|++....  ..  ..+..           +.......+. |+|+   ++...++.-.++.|.+
T Consensus       155 g~~v~v~dlG-~D~v~~~~~~~~~~~l~~~~~~~~-----------~~G~GPRh~~-f~pd---g~~~Yv~~e~s~~v~v  218 (345)
T PF10282_consen  155 GRFVYVPDLG-ADRVYVYDIDDDTGKLTPVDSIKV-----------PPGSGPRHLA-FSPD---GKYAYVVNELSNTVSV  218 (345)
T ss_dssp             SSEEEEEETT-TTEEEEEEE-TTS-TEEEEEEEEC-----------STTSSEEEEE-E-TT---SSEEEEEETTTTEEEE
T ss_pred             CCEEEEEecC-CCEEEEEEEeCCCceEEEeecccc-----------ccCCCCcEEE-EcCC---cCEEEEecCCCCcEEE
Confidence            9988765444 4579999997655  21  12221           1223355565 9998   6646677777889999


Q ss_pred             EEccCC-CC--ceEeeec----C--CcceEEEEEeCCCCeEEEe-cCCCcEEEEecCC--CeeeE--e-------eeeee
Q 021291          236 WDIRNP-GI--PLTAMKV----H--LEPVLCLSIDESCNGGISG-GADQKIVLYNLDH--STYVL--F-------GIGFV  294 (314)
Q Consensus       236 wd~~~~-~~--~~~~~~~----h--~~~v~~~~~~~~~~~l~s~-s~dg~i~iw~~~~--~~~~~--~-------~~~~~  294 (314)
                      +++... +.  .+..+..    .  ......|+++|+|++|.++ ..++.|.+|+++.  ++...  .       ...+.
T Consensus       219 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~  298 (345)
T PF10282_consen  219 FDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFA  298 (345)
T ss_dssp             EEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEE
T ss_pred             EeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEE
Confidence            999821 32  1222221    1  1257889999999987554 4577899999943  22211  1       24566


Q ss_pred             ecCCCceec
Q 021291          295 CDQEGNKFG  303 (314)
Q Consensus       295 ~~~~~~~~~  303 (314)
                      ++++|..+.
T Consensus       299 ~s~~g~~l~  307 (345)
T PF10282_consen  299 FSPDGRYLY  307 (345)
T ss_dssp             E-TTSSEEE
T ss_pred             EeCCCCEEE
Confidence            778876554

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.12  E-value=8.4e-09  Score=84.91  Aligned_cols=229  Identities=13%  Similarity=0.085  Sum_probs=129.6

Q ss_pred             ceeEEEEccCCCEEEEecC-----------CCeEEEEeCCCCeEEEEEeccCCcccEEE-EEEcccCCCCeEEEeecCCe
Q 021291           20 SVTDVCFHQTKPILFAGTT-----------GGELRIWDTVQHRTVSSSWVHSAAHGIVS-VATGPSIGLNKVISQGRDGT   87 (314)
Q Consensus        20 ~v~~~~~~~~~~~l~s~~~-----------dg~v~iwd~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~l~s~~~dg~   87 (314)
                      .|.-+.|||..+||+|-+.           ...++|||+.+|...+.+........++- ..||.  |++++|--.. .+
T Consensus       251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~--DdKy~Arm~~-~s  327 (698)
T KOG2314|consen  251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSH--DDKYFARMTG-NS  327 (698)
T ss_pred             CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEecc--CCceeEEecc-ce
Confidence            4888999999999998653           14799999999999988876443344544 57998  8888886665 47


Q ss_pred             EEEEeCCCCCCCCCCeeeeecceeeEEEeeee---------------------ecccccc--------------------
Q 021291           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLV---------------------KEPYANA--------------------  126 (314)
Q Consensus        88 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~--------------------  126 (314)
                      |.||+.....+.....+.+.  ....-.+++.                     .-|....                    
T Consensus       328 isIyEtpsf~lld~Kslki~--gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~g  405 (698)
T KOG2314|consen  328 ISIYETPSFMLLDKKSLKIS--GIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSG  405 (698)
T ss_pred             EEEEecCceeeecccccCCc--cccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCC
Confidence            88888655332211011100  0000000000                     0000000                    


Q ss_pred             ---------------ccCCCCcceeeccCCceeeecCCCCCC---ceeccCCCceEEEeecC-cCeEEEEecCC-Cc---
Q 021291          127 ---------------KQANEPKDCYEREVGETVDTDSLCDSK---DDVPAEGPKYMAVAGEQ-LSEVEIWDLNT-AE---  183 (314)
Q Consensus       127 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~-d~~i~vwd~~~-~~---  183 (314)
                                     ...-....+..++..........-...   .+|-|.|+.+.+.+|.. ..++.+|-+.+ ..   
T Consensus       406 dyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~  485 (698)
T KOG2314|consen  406 DYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPS  485 (698)
T ss_pred             cEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchh
Confidence                           000001111122221111111111111   67889999887776643 35688898873 22   


Q ss_pred             eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEe---ecCCcEEEEEccCCCCceEeeecCCcceEEEEE
Q 021291          184 RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG---YEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSI  260 (314)
Q Consensus       184 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g---~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~  260 (314)
                      ++..+.              ...+..+. |+|.   |+ +++.+   +..|.+.++|+.. ..+...-..-.-..+.+.|
T Consensus       486 lVk~~d--------------k~~~N~vf-wsPk---G~-fvvva~l~s~~g~l~F~D~~~-a~~k~~~~~eh~~at~veW  545 (698)
T KOG2314|consen  486 LVKELD--------------KKFANTVF-WSPK---GR-FVVVAALVSRRGDLEFYDTDY-ADLKDTASPEHFAATEVEW  545 (698)
T ss_pred             hhhhhc--------------ccccceEE-EcCC---Cc-EEEEEEecccccceEEEecch-hhhhhccCccccccccceE
Confidence            233333              23567777 9998   77 44443   4578999999985 2222222111234578999


Q ss_pred             eCCCCeEEEecCC
Q 021291          261 DESCNGGISGGAD  273 (314)
Q Consensus       261 ~~~~~~l~s~s~d  273 (314)
                      +|.|+|++|++.-
T Consensus       546 DPtGRYvvT~ss~  558 (698)
T KOG2314|consen  546 DPTGRYVVTSSSS  558 (698)
T ss_pred             CCCCCEEEEeeeh
Confidence            9999999999864

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.11  E-value=1.4e-07  Score=88.09  Aligned_cols=228  Identities=14%  Similarity=0.066  Sum_probs=132.7

Q ss_pred             eeEEEEccCCCEEEEe-cCCCeEEEEeCCCCeEEEEEeccC--------C-------cccEEEEEEcccCCCCeEEEeec
Q 021291           21 VTDVCFHQTKPILFAG-TTGGELRIWDTVQHRTVSSSWVHS--------A-------AHGIVSVATGPSIGLNKVISQGR   84 (314)
Q Consensus        21 v~~~~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~--------~-------~~~v~~~~~~~~~~~~~l~s~~~   84 (314)
                      ...++++++++.|+.+ ...+.|+++|..++. +.++.+..        +       -..-..++++|. ++..+++.+.
T Consensus       626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~-~g~LyVad~~  703 (1057)
T PLN02919        626 PQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPV-NEKVYIAMAG  703 (1057)
T ss_pred             CcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecC-CCeEEEEECC
Confidence            5778999887765554 456789999987654 33332210        0       012368899982 3345567677


Q ss_pred             CCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceE
Q 021291           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM  164 (314)
Q Consensus        85 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (314)
                      ++.|++||..++...     .+......   ...          .+.          ......+..-.+++++|+++.++
T Consensus       704 ~~~I~v~d~~~g~v~-----~~~G~G~~---~~~----------~g~----------~~~~~~~~~P~GIavspdG~~LY  755 (1057)
T PLN02919        704 QHQIWEYNISDGVTR-----VFSGDGYE---RNL----------NGS----------SGTSTSFAQPSGISLSPDLKELY  755 (1057)
T ss_pred             CCeEEEEECCCCeEE-----EEecCCcc---ccC----------CCC----------ccccccccCccEEEEeCCCCEEE
Confidence            899999999876421     11100000   000          000          00000011111188999998776


Q ss_pred             EEeecCcCeEEEEecCCCceeeeeccc----ccCCCCCcCC-----CCCceeeeEEEecCCCCCCceEEEEeecCCcEEE
Q 021291          165 AVAGEQLSEVEIWDLNTAERCTRLHQN----SCGGSPNFSS-----KGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV  235 (314)
Q Consensus       165 ~~~g~~d~~i~vwd~~~~~~~~~~~~~----~~~~~~~h~~-----~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~v  235 (314)
                      + +.+.++.|++||+.++.........    ......+..+     ..-.....++ ++|+   |. ++++...++.|++
T Consensus       756 V-ADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gva-vd~d---G~-LYVADs~N~rIrv  829 (1057)
T PLN02919        756 I-ADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVL-CAKD---GQ-IYVADSYNHKIKK  829 (1057)
T ss_pred             E-EECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceee-EeCC---Cc-EEEEECCCCEEEE
Confidence            6 4555799999999876532111000    0000000000     0011234565 8877   55 7888888999999


Q ss_pred             EEccCCCCceEeeec--------------CCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCee
Q 021291          236 WDIRNPGIPLTAMKV--------------HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTY  286 (314)
Q Consensus       236 wd~~~~~~~~~~~~~--------------h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~  286 (314)
                      ||..+ +... .+.+              .-.....|+++++|+.+++-+.++.|++||+++++.
T Consensus       830 iD~~t-g~v~-tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        830 LDPAT-KRVT-TLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             EECCC-CeEE-EEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            99985 4332 2222              112567899999999899999999999999998764

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.11  E-value=6.3e-09  Score=86.06  Aligned_cols=114  Identities=14%  Similarity=0.136  Sum_probs=92.8

Q ss_pred             ceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCC
Q 021291          162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP  241 (314)
Q Consensus       162 ~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~  241 (314)
                      ..+++-|...|.|.+|+...++....+...      .|    .+.+.++. ++.+-  +  .|.+++.|+.+..|+... 
T Consensus        70 t~~lvlgt~~g~v~~ys~~~g~it~~~st~------~h----~~~v~~~~-~~~~~--~--ciyS~~ad~~v~~~~~~~-  133 (541)
T KOG4547|consen   70 TSMLVLGTPQGSVLLYSVAGGEITAKLSTD------KH----YGNVNEIL-DAQRL--G--CIYSVGADLKVVYILEKE-  133 (541)
T ss_pred             ceEEEeecCCccEEEEEecCCeEEEEEecC------CC----CCcceeee-ccccc--C--ceEecCCceeEEEEeccc-
Confidence            345556777899999999999988887632      34    45666665 55542  2  799999999999999998 


Q ss_pred             CCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEeeeee
Q 021291          242 GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFGIGF  293 (314)
Q Consensus       242 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~  293 (314)
                      .+.++.+++....+.+++.+||+..|+++|  +.|++||+++.+.+..+.||
T Consensus       134 ~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh  183 (541)
T KOG4547|consen  134 KVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGH  183 (541)
T ss_pred             ceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCC
Confidence            888899999889999999999999888876  57999999999998876654

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.08  E-value=4.1e-07  Score=76.73  Aligned_cols=197  Identities=6%  Similarity=-0.015  Sum_probs=116.3

Q ss_pred             ceeEEEEccCCCE-EEEecC---CCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEE-EeecC--CeEEEEe
Q 021291           20 SVTDVCFHQTKPI-LFAGTT---GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRD--GTVKCWD   92 (314)
Q Consensus        20 ~v~~~~~~~~~~~-l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d--g~v~iwd   92 (314)
                      .+..-.|+|||+. ++..+.   +..|.++|+.+++...... ..  .......|+|  ||+.++ +.+.+  ..|.++|
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~--g~~~~~~~SP--DG~~la~~~~~~g~~~Iy~~d  263 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQ--GMLVVSDVSK--DGSKLLLTMAPKGQPDIYLYD  263 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CC--CcEEeeEECC--CCCEEEEEEccCCCcEEEEEE
Confidence            6778999999984 554333   3579999998886654433 33  3366788999  988766 44433  4677778


Q ss_pred             CCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCc-
Q 021291           93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL-  171 (314)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d-  171 (314)
                      +.+++...     +......  ...                                    ..|+|||+.+++++...+ 
T Consensus       264 l~~g~~~~-----LT~~~~~--d~~------------------------------------p~~SPDG~~I~F~Sdr~g~  300 (419)
T PRK04043        264 TNTKTLTQ-----ITNYPGI--DVN------------------------------------GNFVEDDKRIVFVSDRLGY  300 (419)
T ss_pred             CCCCcEEE-----cccCCCc--cCc------------------------------------cEECCCCCEEEEEECCCCC
Confidence            77764311     1111100  000                                    349999998877553321 


Q ss_pred             CeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecC--------CcEEEEEccCCCC
Q 021291          172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED--------GSILVWDIRNPGI  243 (314)
Q Consensus       172 ~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~d--------g~i~vwd~~~~~~  243 (314)
                      ..|++.|+.+++.......       +.    .    ... |+|+   |+.++++...+        ..|.+.|+.. +.
T Consensus       301 ~~Iy~~dl~~g~~~rlt~~-------g~----~----~~~-~SPD---G~~Ia~~~~~~~~~~~~~~~~I~v~d~~~-g~  360 (419)
T PRK04043        301 PNIFMKKLNSGSVEQVVFH-------GK----N----NSS-VSTY---KNYIVYSSRETNNEFGKNTFNLYLISTNS-DY  360 (419)
T ss_pred             ceEEEEECCCCCeEeCccC-------CC----c----Cce-ECCC---CCEEEEEEcCCCcccCCCCcEEEEEECCC-CC
Confidence            2688888887765332220       11    1    124 9998   55344444433        3688888876 43


Q ss_pred             ceEeeecCCcceEEEEEeCCCCeEEEecCC-C--cEEEEecCCCee
Q 021291          244 PLTAMKVHLEPVLCLSIDESCNGGISGGAD-Q--KIVLYNLDHSTY  286 (314)
Q Consensus       244 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d-g--~i~iw~~~~~~~  286 (314)
                       ...+... .......|+|||+.|+-.+.+ +  .+.+.+++....
T Consensus       361 -~~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~  404 (419)
T PRK04043        361 -IRRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKS  404 (419)
T ss_pred             -eEECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCee
Confidence             3444432 233357899999987555443 2  366667765443

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.07  E-value=1.3e-07  Score=80.13  Aligned_cols=201  Identities=12%  Similarity=0.040  Sum_probs=110.9

Q ss_pred             CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCe--E-EEeecCC--eEEEEeCCCCCCCCCCeeeeecceeeEE
Q 021291           40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNK--V-ISQGRDG--TVKCWDIENGGLSSNPSLTIKTNSYHFC  114 (314)
Q Consensus        40 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--l-~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~  114 (314)
                      +.|.+.|.+.+... .+....  ..+.+-+|+|  ||+.  + ++...+|  .|.+.++.+++...  +.........  
T Consensus       165 ~~l~~~d~dG~~~~-~lt~~~--~~~~sP~wSP--DG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--lt~~~g~~~~--  235 (428)
T PRK01029        165 GELWSVDYDGQNLR-PLTQEH--SLSITPTWMH--IGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--ILALQGNQLM--  235 (428)
T ss_pred             ceEEEEcCCCCCce-EcccCC--CCcccceEcc--CCCceEEEEEEccCCCceEEEEECCCCCceE--eecCCCCccc--
Confidence            46778887654433 333333  3367789999  9875  3 2444443  57777888775322  2111111100  


Q ss_pred             EeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEee---cCcCeEEEEecCCCc--eeeeec
Q 021291          115 KLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG---EQLSEVEIWDLNTAE--RCTRLH  189 (314)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~d~~i~vwd~~~~~--~~~~~~  189 (314)
                                                             .+|+|||+.++.++.   ..|-.+.+|++..+.  ....+.
T Consensus       236 ---------------------------------------p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt  276 (428)
T PRK01029        236 ---------------------------------------PTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLL  276 (428)
T ss_pred             ---------------------------------------eEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEee
Confidence                                                   459999988776431   112334447766531  222222


Q ss_pred             ccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEE--EccCCCCceEeeecCCcceEEEEEeCCCCeE
Q 021291          190 QNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW--DIRNPGIPLTAMKVHLEPVLCLSIDESCNGG  267 (314)
Q Consensus       190 ~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vw--d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l  267 (314)
                      .       +.    .+...... |+||   |+.++++...+|...+|  ++...+.....+..+...+....|+|||++|
T Consensus       277 ~-------~~----~~~~~~p~-wSPD---G~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~L  341 (428)
T PRK01029        277 N-------EA----FGTQGNPS-FSPD---GTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKI  341 (428)
T ss_pred             c-------CC----CCCcCCeE-ECCC---CCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEE
Confidence            1       11    11223444 9998   55344444456655555  4432133344555555677889999999988


Q ss_pred             EEecCC---CcEEEEecCCCeeeEee------eeeeecCCCceec
Q 021291          268 ISGGAD---QKIVLYNLDHSTYVLFG------IGFVCDQEGNKFG  303 (314)
Q Consensus       268 ~s~s~d---g~i~iw~~~~~~~~~~~------~~~~~~~~~~~~~  303 (314)
                      +..+.+   ..|.+||+.+++.....      ....++|+|..+.
T Consensus       342 af~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~  386 (428)
T PRK01029        342 AFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLV  386 (428)
T ss_pred             EEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEE
Confidence            766543   36999999888654321      2245567776543

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.06  E-value=8.7e-07  Score=71.95  Aligned_cols=218  Identities=9%  Similarity=0.008  Sum_probs=121.8

Q ss_pred             CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeec----------CCeEEEEeCCCCCCCCCCeeeeecc
Q 021291           40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR----------DGTVKCWDIENGGLSSNPSLTIKTN  109 (314)
Q Consensus        40 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~----------dg~v~iwd~~~~~~~~~~~~~~~~~  109 (314)
                      ++|.+.|..+++.+..+..-..+  - .+ ++|  |++.|+.+..          +..|.+||..+.+.+.+  +.+...
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P--~-~~-~sp--Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~--i~~p~~   98 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLP--N-PV-VAS--DGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIAD--IELPEG   98 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCC--c-ee-ECC--CCCEEEEEeccccccccCCCCCEEEEEECccCcEEeE--EccCCC
Confidence            89999999999999888765533  2 34 999  9888886654          78999999999876541  121111


Q ss_pred             eeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceeeeec
Q 021291          110 SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLH  189 (314)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~  189 (314)
                      +.....-..                                 ..++++|+|+.++++.-+.+..|.+.|+.+++.+..+.
T Consensus        99 p~~~~~~~~---------------------------------~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~  145 (352)
T TIGR02658        99 PRFLVGTYP---------------------------------WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMD  145 (352)
T ss_pred             chhhccCcc---------------------------------ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEe
Confidence            000000000                                 00446666665554332335666666666666555443


Q ss_pred             ccccCCC--------CCcCCC-----------CCceeeeEEEecC------CCC-----CCceEEEEeecCCcEEEEEcc
Q 021291          190 QNSCGGS--------PNFSSK-----------GRGMCMAVQAYLP------SKS-----QGFVNVLAGYEDGSILVWDIR  239 (314)
Q Consensus       190 ~~~~~~~--------~~h~~~-----------~~~~~~~~~~~~p------~~~-----~g~~~l~~g~~dg~i~vwd~~  239 (314)
                      .+.+...        ..|...           .........-|.+      ..+     +|. ++.+..+ |.|++.|+.
T Consensus       146 vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~-~~~vs~e-G~V~~id~~  223 (352)
T TIGR02658       146 VPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGR-LVWPTYT-GKIFQIDLS  223 (352)
T ss_pred             CCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCc-EEEEecC-CeEEEEecC
Confidence            2210000        000000           0000001000222      111     355 5555555 999999964


Q ss_pred             CC----CCceEeeec-------CCcceEEEEEeCCCCeEEEec----------CCCcEEEEecCCCeeeEee------ee
Q 021291          240 NP----GIPLTAMKV-------HLEPVLCLSIDESCNGGISGG----------ADQKIVLYNLDHSTYVLFG------IG  292 (314)
Q Consensus       240 ~~----~~~~~~~~~-------h~~~v~~~~~~~~~~~l~s~s----------~dg~i~iw~~~~~~~~~~~------~~  292 (314)
                      ..    ..+...+..       ..+.+.-++++++++.+....          ..+.|.++|..+++.+.++      .+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~  303 (352)
T TIGR02658       224 SGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDS  303 (352)
T ss_pred             CCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceee
Confidence            31    222222221       223344599999998887642          1257999999999988863      46


Q ss_pred             eeecCCCc
Q 021291          293 FVCDQEGN  300 (314)
Q Consensus       293 ~~~~~~~~  300 (314)
                      +.++++++
T Consensus       304 iavS~Dgk  311 (352)
T TIGR02658       304 INVSQDAK  311 (352)
T ss_pred             EEECCCCC
Confidence            77888887

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.06  E-value=3.6e-09  Score=89.75  Aligned_cols=213  Identities=14%  Similarity=0.116  Sum_probs=140.4

Q ss_pred             ceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEE
Q 021291           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (314)
Q Consensus        10 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~   89 (314)
                      .-++|.||++.|.-+.|+.+.+.|-|...+|.|.||-+-+|.....+......+.|.+++|+.  +|..++..-.||.|.
T Consensus        63 mNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~--dG~kIcIvYeDGavI  140 (1189)
T KOG2041|consen   63 MNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL--DGTKICIVYEDGAVI  140 (1189)
T ss_pred             hhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC--CCcEEEEEEccCCEE
Confidence            457899999999999999999999999999999999998886554444444446699999999  999999999999998


Q ss_pred             EEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeec
Q 021291           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE  169 (314)
Q Consensus        90 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  169 (314)
                      +=.++.++...+   .++......                                        +.|++|.+.+++  +-
T Consensus       141 VGsvdGNRIwgK---eLkg~~l~h----------------------------------------v~ws~D~~~~Lf--~~  175 (1189)
T KOG2041|consen  141 VGSVDGNRIWGK---ELKGQLLAH----------------------------------------VLWSEDLEQALF--KK  175 (1189)
T ss_pred             EEeeccceecch---hcchheccc----------------------------------------eeecccHHHHHh--hh
Confidence            877776543221   111111111                                        448888876664  44


Q ss_pred             CcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEE----EecCCCCCCceEEEEeecCCcEEEEEccCCCCce
Q 021291          170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQ----AYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL  245 (314)
Q Consensus       170 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~----~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~  245 (314)
                      .+|.+.+||.+..- ...+...+.++.+|-.......+-.+.    .+-|..|+.. .++++..+|.+.+..-.+...|+
T Consensus       176 ange~hlydnqgnF-~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP-~lavcy~nGr~QiMR~eND~~Pv  253 (1189)
T KOG2041|consen  176 ANGETHLYDNQGNF-ERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRP-RLAVCYANGRMQIMRSENDPEPV  253 (1189)
T ss_pred             cCCcEEEecccccH-HHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCC-EEEEEEcCceehhhhhcCCCCCe
Confidence            56899999976321 111111111111111110001111221    1222223233 89999999999998776645665


Q ss_pred             EeeecCCcceEEEEEeCCCCeEEEecCC
Q 021291          246 TAMKVHLEPVLCLSIDESCNGGISGGAD  273 (314)
Q Consensus       246 ~~~~~h~~~v~~~~~~~~~~~l~s~s~d  273 (314)
                      ..-.+  -.|....|+++|..|+.++.|
T Consensus       254 v~dtg--m~~vgakWnh~G~vLAvcG~~  279 (1189)
T KOG2041|consen  254 VVDTG--MKIVGAKWNHNGAVLAVCGND  279 (1189)
T ss_pred             EEecc--cEeecceecCCCcEEEEccCc
Confidence            44333  678999999999999999875

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.05  E-value=5.8e-10  Score=60.17  Aligned_cols=38  Identities=16%  Similarity=0.185  Sum_probs=36.2

Q ss_pred             CceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEe
Q 021291          243 IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN  280 (314)
Q Consensus       243 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~  280 (314)
                      +++.++.+|...|++|+|+|++.+|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            56789999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.05  E-value=2.9e-09  Score=90.52  Aligned_cols=214  Identities=17%  Similarity=0.250  Sum_probs=132.7

Q ss_pred             CceEEecCCCCceeEEEEccC-CCEEEEecCCCeEEEEeCCCCe-EEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC
Q 021291            9 DPVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHR-TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg   86 (314)
                      ..-..+.||...|+.+-|+|+ ...|++++.|-.+..||++... .+..+..-.  ..-..++|+-. + ..+++.+...
T Consensus       105 aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~--s~asqVkwnyk-~-p~vlasshg~  180 (1081)
T KOG0309|consen  105 AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWR--SAASQVKWNYK-D-PNVLASSHGN  180 (1081)
T ss_pred             ceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeeccc--ccCceeeeccc-C-cchhhhccCC
Confidence            445577899999999999994 5689999999999999998754 444443333  33678999873 3 4444455567


Q ss_pred             eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEE
Q 021291           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV  166 (314)
Q Consensus        87 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (314)
                      .|++||.+.+..   |...++.+......                                      ++|...-...+. 
T Consensus       181 ~i~vwd~r~gs~---pl~s~K~~vs~vn~--------------------------------------~~fnr~~~s~~~-  218 (1081)
T KOG0309|consen  181 DIFVWDLRKGST---PLCSLKGHVSSVNS--------------------------------------IDFNRFKYSEIM-  218 (1081)
T ss_pred             ceEEEeccCCCc---ceEEecccceeeeh--------------------------------------HHHhhhhhhhhc-
Confidence            899999998763   34444442111110                                      112211112233 


Q ss_pred             eecCcCeEEEEecCCCcee--eeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcE---------EE
Q 021291          167 AGEQLSEVEIWDLNTAERC--TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI---------LV  235 (314)
Q Consensus       167 ~g~~d~~i~vwd~~~~~~~--~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i---------~v  235 (314)
                      +.+.|++|++||.......  +...             ...+++.-. |.|-+. |. ++.---.+..+         ..
T Consensus       219 s~~~d~tvkfw~y~kSt~e~~~~vt-------------t~~piw~~r-~~Pfg~-g~-~~mp~~G~n~v~~~~c~n~d~e  282 (1081)
T KOG0309|consen  219 SSSNDGTVKFWDYSKSTTESKRTVT-------------TNFPIWRGR-YLPFGE-GY-CIMPMVGGNMVPQLRCENSDLE  282 (1081)
T ss_pred             ccCCCCceeeecccccccccceecc-------------ccCcceecc-ccccCc-ee-EeccccCCeeeeeccccchhhh
Confidence            5677999999998754322  2222             122333333 666532 32 22211112233         34


Q ss_pred             EEccCCCCceEeeecCCcceEEEEEeC----------CCCeEEEecCCCcEEEEecCCC
Q 021291          236 WDIRNPGIPLTAMKVHLEPVLCLSIDE----------SCNGGISGGADQKIVLYNLDHS  284 (314)
Q Consensus       236 wd~~~~~~~~~~~~~h~~~v~~~~~~~----------~~~~l~s~s~dg~i~iw~~~~~  284 (314)
                      |+..+..++++.+.||.+.|...-|-.          ..-.|+|-|.|..+++|-+...
T Consensus       283 ~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~  341 (1081)
T KOG0309|consen  283 WNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ  341 (1081)
T ss_pred             hccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence            555555689999999999988777721          1225899999999999988643

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.04  E-value=1.7e-07  Score=76.68  Aligned_cols=246  Identities=11%  Similarity=0.009  Sum_probs=154.0

Q ss_pred             CceeEEEEccCCCEEEEecCCC---------------eEEEEeCCCCeEEEEEeccCCcccEE-EEEEcccCCCCeEEEe
Q 021291           19 ASVTDVCFHQTKPILFAGTTGG---------------ELRIWDTVQHRTVSSSWVHSAAHGIV-SVATGPSIGLNKVISQ   82 (314)
Q Consensus        19 ~~v~~~~~~~~~~~l~s~~~dg---------------~v~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~s~   82 (314)
                      ..|.-+.|+|.++||.+=+..+               .+.+||+.++..+..+.....+.-.+ -+.|+-  +..+++=.
T Consensus        72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~--~D~y~ARv  149 (561)
T COG5354          72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSI--DDKYVARV  149 (561)
T ss_pred             CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeee--cchhhhhh
Confidence            4588899999999999876544               49999999999999887766432245 677877  65666543


Q ss_pred             ecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeecccc-c-----cccCCCCcceeeccCCceeeec-CCCCCC--
Q 021291           83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-N-----AKQANEPKDCYEREVGETVDTD-SLCDSK--  153 (314)
Q Consensus        83 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--  153 (314)
                      . ...+.|+++ +.....-|...++......-.+++.+.... .     .....+...++.+.....+... +..-++  
T Consensus       150 v-~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~q  227 (561)
T COG5354         150 V-GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQ  227 (561)
T ss_pred             c-cCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccE
Confidence            2 347999997 444333233333333333333333321111 0     1112233444555444333222 222222  


Q ss_pred             ceeccCCCceEEEeecC---------cCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEE
Q 021291          154 DDVPAEGPKYMAVAGEQ---------LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNV  224 (314)
Q Consensus       154 ~~~~~~~~~~~~~~g~~---------d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l  224 (314)
                      +.|.+.|+++++..-..         +..++|++++.........             ..+.+...+ |.|..  .++.+
T Consensus       228 LkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~-------------~~~pVhdf~-W~p~S--~~F~v  291 (561)
T COG5354         228 LKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKD-------------LKDPVHDFT-WEPLS--SRFAV  291 (561)
T ss_pred             EEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceecc-------------ccccceeee-ecccC--CceeE
Confidence            78889998876643211         2567888887444332221             356788887 99984  34467


Q ss_pred             EEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCC---CcEEEEecCCCeeeE
Q 021291          225 LAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD---QKIVLYNLDHSTYVL  288 (314)
Q Consensus       225 ~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d---g~i~iw~~~~~~~~~  288 (314)
                      ++|..+-.+.++|++.  ....  ......=+.+.|+|.+++++.++.|   |.+-+||......+.
T Consensus       292 i~g~~pa~~s~~~lr~--Nl~~--~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~  354 (561)
T COG5354         292 ISGYMPASVSVFDLRG--NLRF--YFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVA  354 (561)
T ss_pred             Eecccccceeeccccc--ceEE--ecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEE
Confidence            7788999999999994  4433  3345566788899999999998876   679999988776655

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.04  E-value=1.5e-09  Score=92.20  Aligned_cols=209  Identities=18%  Similarity=0.262  Sum_probs=138.9

Q ss_pred             CCceeEEEEccCCCEEEEecCCCeEEEEeCCCC-eEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCC
Q 021291           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQH-RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG   96 (314)
Q Consensus        18 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~   96 (314)
                      .+++.++..+|.|+-+|.++.-| +.+-|+... ...+.+ .|..+-.|-.+.|+|...-.+-+.......-.+|++...
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l-~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s  101 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWL-HHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS  101 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceee-eccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence            46788999999999999999988 667787653 333333 344334578888988544344444334445568888643


Q ss_pred             CCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEE
Q 021291           97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI  176 (314)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v  176 (314)
                      .-.. ..+-++.+......                                      +.|.|+...+++ +++-|..+..
T Consensus       102 s~~a-Ief~lhghsraitd--------------------------------------~n~~~q~pdVla-tcsvdt~vh~  141 (1081)
T KOG0309|consen  102 SSNA-IEFVLHGHSRAITD--------------------------------------INFNPQHPDVLA-TCSVDTYVHA  141 (1081)
T ss_pred             Cccc-eEEEEecCccceec--------------------------------------cccCCCCCccee-ecccccccee
Confidence            3211 11222222211111                                      457787776666 6777999999


Q ss_pred             EecCCCce-eeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcce
Q 021291          177 WDLNTAER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPV  255 (314)
Q Consensus       177 wd~~~~~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v  255 (314)
                      ||+++... +..+..            -......+. |+-..+    .+.+.+..+.|.+||++.+..++..+++|...|
T Consensus       142 wd~rSp~~p~ys~~~------------w~s~asqVk-wnyk~p----~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~v  204 (1081)
T KOG0309|consen  142 WDMRSPHRPFYSTSS------------WRSAASQVK-WNYKDP----NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSV  204 (1081)
T ss_pred             eeccCCCcceeeeec------------ccccCceee-ecccCc----chhhhccCCceEEEeccCCCcceEEecccceee
Confidence            99998764 333321            122344555 775533    455566677899999999889999999999999


Q ss_pred             EEEEEe-CCCCeEEEecCCCcEEEEecCCCe
Q 021291          256 LCLSID-ESCNGGISGGADQKIVLYNLDHST  285 (314)
Q Consensus       256 ~~~~~~-~~~~~l~s~s~dg~i~iw~~~~~~  285 (314)
                      +.++|. .....+.+.+.||+|++||.+...
T Consensus       205 n~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt  235 (1081)
T KOG0309|consen  205 NSIDFNRFKYSEIMSSSNDGTVKFWDYSKST  235 (1081)
T ss_pred             ehHHHhhhhhhhhcccCCCCceeeecccccc
Confidence            999994 333457999999999999987554

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.04  E-value=4.5e-07  Score=83.32  Aligned_cols=239  Identities=10%  Similarity=0.079  Sum_probs=136.3

Q ss_pred             CCCceeEEEEccCCCEEEEecCCCeEEEE----eCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEe
Q 021291           17 HRASVTDVCFHQTKPILFAGTTGGELRIW----DTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD   92 (314)
Q Consensus        17 h~~~v~~~~~~~~~~~l~s~~~dg~v~iw----d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd   92 (314)
                      ..+.|.++.|-++...++.+..+|.|.+.    +..+...- ....-.  .+|.+++|||  |+..|+.+..+++|.+.+
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E-~VG~vd--~GI~a~~WSP--D~Ella~vT~~~~l~~mt  148 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIE-IVGSVD--SGILAASWSP--DEELLALVTGEGNLLLMT  148 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeE-EEEEEc--CcEEEEEECC--CcCEEEEEeCCCEEEEEe
Confidence            35689999999999899999999999999    54443221 121122  4599999999  999999999999988874


Q ss_pred             CCCCCCCCCCeeeeecceeeE-EEeeeeeccccccccCCCCcce-----eeccCCceeeecCC--CCCC-ceeccCCCce
Q 021291           93 IENGGLSSNPSLTIKTNSYHF-CKLSLVKEPYANAKQANEPKDC-----YEREVGETVDTDSL--CDSK-DDVPAEGPKY  163 (314)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~  163 (314)
                      - +.+.+.  ...+....... ..+++-+.....-. -|...+-     .+....+.-...+.  .... ++|-.||+++
T Consensus       149 ~-~fd~i~--E~~l~~~~~~~~~~VsVGWGkKeTQF-~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yF  224 (928)
T PF04762_consen  149 R-DFDPIS--EVPLDSDDFGESKHVSVGWGKKETQF-HGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYF  224 (928)
T ss_pred             c-cceEEE--EeecCccccCCCceeeeccCcccCcc-CcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEE
Confidence            2 222211  11111111110 01111111000000 0000000     00000000001111  1111 8999999877


Q ss_pred             EEEee--cC--cCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeec---CCcEEEE
Q 021291          164 MAVAG--EQ--LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE---DGSILVW  236 (314)
Q Consensus       164 ~~~~g--~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~---dg~i~vw  236 (314)
                      .+.+-  ..  -+.++||+-. |....+-            .+..+.--+++ |.|.   |. +||+...   ...|.+|
T Consensus       225 AVss~~~~~~~~R~iRVy~Re-G~L~stS------------E~v~gLe~~l~-WrPs---G~-lIA~~q~~~~~~~VvFf  286 (928)
T PF04762_consen  225 AVSSVEPETGSRRVIRVYSRE-GELQSTS------------EPVDGLEGALS-WRPS---GN-LIASSQRLPDRHDVVFF  286 (928)
T ss_pred             EEEEEEcCCCceeEEEEECCC-ceEEecc------------ccCCCccCCcc-CCCC---CC-EEEEEEEcCCCcEEEEE
Confidence            65443  12  2689999854 6543322            23455666666 9998   54 7776654   3457777


Q ss_pred             EccCCCCceEeee----cCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCe
Q 021291          237 DIRNPGIPLTAMK----VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST  285 (314)
Q Consensus       237 d~~~~~~~~~~~~----~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~  285 (314)
                      .-+  |.....+.    .....|..|.|+.++..|+..-.|. |.+|-..+..
T Consensus       287 ErN--GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH  336 (928)
T PF04762_consen  287 ERN--GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH  336 (928)
T ss_pred             ecC--CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE
Confidence            644  44333333    3456899999999999998876665 9999887765

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.03  E-value=3.5e-07  Score=76.75  Aligned_cols=228  Identities=14%  Similarity=0.087  Sum_probs=125.5

Q ss_pred             CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeec
Q 021291           29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKT  108 (314)
Q Consensus        29 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~  108 (314)
                      ++..++.++.+|.+..+|..+|+.+.......   .+.+.-..   .+..++.++.++.|..||.++++.+.+  .....
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~---~~~~~p~v---~~~~v~v~~~~g~l~a~d~~tG~~~W~--~~~~~  175 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS---EVLSPPLV---ANGLVVVRTNDGRLTALDAATGERLWT--YSRVT  175 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc---eeecCCEE---ECCEEEEECCCCeEEEEEcCCCceeeE--EccCC
Confidence            45678888999999999999999887665432   13221111   235677778899999999999986552  11111


Q ss_pred             ceeeEE-Eeeeee-ccccccccCCCCcceeeccCCceeeec-CC---CCCC------ceecc--CCCceEEEeecCcCeE
Q 021291          109 NSYHFC-KLSLVK-EPYANAKQANEPKDCYEREVGETVDTD-SL---CDSK------DDVPA--EGPKYMAVAGEQLSEV  174 (314)
Q Consensus       109 ~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~------~~~~~--~~~~~~~~~g~~d~~i  174 (314)
                      ...... ..++.. ..........+....++...++..-.. ..   +...      ..-+|  .+..+++  ++.++.+
T Consensus       176 ~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~--~~~~g~l  253 (377)
T TIGR03300       176 PALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYA--VSYQGRV  253 (377)
T ss_pred             CceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEE--EEcCCEE
Confidence            100000 000000 011111112223333344444322111 00   0000      00011  2344443  4457999


Q ss_pred             EEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCC-c
Q 021291          175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL-E  253 (314)
Q Consensus       175 ~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~-~  253 (314)
                      +.||.++++.+.....             .. ..... ..     +. .+++++.+|.|+.+|..+ ++.+....... .
T Consensus       254 ~a~d~~tG~~~W~~~~-------------~~-~~~p~-~~-----~~-~vyv~~~~G~l~~~d~~t-G~~~W~~~~~~~~  311 (377)
T TIGR03300       254 AALDLRSGRVLWKRDA-------------SS-YQGPA-VD-----DN-RLYVTDADGVVVALDRRS-GSELWKNDELKYR  311 (377)
T ss_pred             EEEECCCCcEEEeecc-------------CC-ccCce-Ee-----CC-EEEEECCCCeEEEEECCC-CcEEEccccccCC
Confidence            9999999987655441             00 11111 22     22 677788899999999987 66665442211 1


Q ss_pred             ceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEee
Q 021291          254 PVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFG  290 (314)
Q Consensus       254 ~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~  290 (314)
                      ...+....  +..|++++.+|.|+++|.++++.++..
T Consensus       312 ~~ssp~i~--g~~l~~~~~~G~l~~~d~~tG~~~~~~  346 (377)
T TIGR03300       312 QLTAPAVV--GGYLVVGDFEGYLHWLSREDGSFVARL  346 (377)
T ss_pred             ccccCEEE--CCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence            22222222  347888999999999999999988764

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.02  E-value=8.7e-09  Score=81.45  Aligned_cols=79  Identities=18%  Similarity=0.209  Sum_probs=65.3

Q ss_pred             CceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEee-ecCCcceEEEEEeCCCCeEEEecCCCcEEEEecC
Q 021291          204 RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM-KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD  282 (314)
Q Consensus       204 ~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~  282 (314)
                      -.+++.++ ++||   ++ +|+++..|..|++-.... ...+..+ -||..-|..++.-++.. |+++|.|++|++||+.
T Consensus       151 vSml~dVa-vS~D---~~-~IitaDRDEkIRvs~ypa-~f~IesfclGH~eFVS~isl~~~~~-LlS~sGD~tlr~Wd~~  223 (390)
T KOG3914|consen  151 VSMLLDVA-VSPD---DQ-FIITADRDEKIRVSRYPA-TFVIESFCLGHKEFVSTISLTDNYL-LLSGSGDKTLRLWDIT  223 (390)
T ss_pred             hhhhheee-ecCC---CC-EEEEecCCceEEEEecCc-ccchhhhccccHhheeeeeeccCce-eeecCCCCcEEEEecc
Confidence            55888998 9998   44 999999999999988775 3344443 48999999999977654 8999999999999999


Q ss_pred             CCeeeEe
Q 021291          283 HSTYVLF  289 (314)
Q Consensus       283 ~~~~~~~  289 (314)
                      +++.+..
T Consensus       224 sgk~L~t  230 (390)
T KOG3914|consen  224 SGKLLDT  230 (390)
T ss_pred             cCCcccc
Confidence            9998743

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.02  E-value=6e-07  Score=70.26  Aligned_cols=193  Identities=15%  Similarity=0.143  Sum_probs=116.2

Q ss_pred             CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeee-e
Q 021291           29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTI-K  107 (314)
Q Consensus        29 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~  107 (314)
                      ++..+++++.++.|..||..+|+.+..+.........  . ..   .+..++.++.++.|..+|..+++...    .. .
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~--~-~~---~~~~v~v~~~~~~l~~~d~~tG~~~W----~~~~  104 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA--P-VV---DGGRVYVGTSDGSLYALDAKTGKVLW----SIYL  104 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG--E-EE---ETTEEEEEETTSEEEEEETTTSCEEE----EEEE
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce--e-ee---cccccccccceeeeEecccCCcceee----eecc
Confidence            5667888889999999999999999888763321111  1 21   34677777788899999999997644    21 1


Q ss_pred             cc-eeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceee
Q 021291          108 TN-SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCT  186 (314)
Q Consensus       108 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~  186 (314)
                      .. +......                                    .......++.+++  +..++.|..+|+++|+.+.
T Consensus       105 ~~~~~~~~~~------------------------------------~~~~~~~~~~~~~--~~~~g~l~~~d~~tG~~~w  146 (238)
T PF13360_consen  105 TSSPPAGVRS------------------------------------SSSPAVDGDRLYV--GTSSGKLVALDPKTGKLLW  146 (238)
T ss_dssp             -SSCTCSTB--------------------------------------SEEEEETTEEEE--EETCSEEEEEETTTTEEEE
T ss_pred             cccccccccc------------------------------------ccCceEecCEEEE--EeccCcEEEEecCCCcEEE
Confidence            10 0000000                                    0112223454543  3336999999999999987


Q ss_pred             eecccccCCCCCcCCCCCc-------eeeeEEEecCCCCCCceEEEEeecCCc-EEEEEccCCCCceEeeecCCcceEEE
Q 021291          187 RLHQNSCGGSPNFSSKGRG-------MCMAVQAYLPSKSQGFVNVLAGYEDGS-ILVWDIRNPGIPLTAMKVHLEPVLCL  258 (314)
Q Consensus       187 ~~~~~~~~~~~~h~~~~~~-------~~~~~~~~~p~~~~g~~~l~~g~~dg~-i~vwd~~~~~~~~~~~~~h~~~v~~~  258 (314)
                      ....        .......       ....+. +. +   +  .++.+..++. +.+ |+.+ ++.+....  ...+..+
T Consensus       147 ~~~~--------~~~~~~~~~~~~~~~~~~~~-~~-~---~--~v~~~~~~g~~~~~-d~~t-g~~~w~~~--~~~~~~~  207 (238)
T PF13360_consen  147 KYPV--------GEPRGSSPISSFSDINGSPV-IS-D---G--RVYVSSGDGRVVAV-DLAT-GEKLWSKP--ISGIYSL  207 (238)
T ss_dssp             EEES--------STT-SS--EEEETTEEEEEE-CC-T---T--EEEEECCTSSEEEE-ETTT-TEEEEEEC--SS-ECEC
T ss_pred             Eeec--------CCCCCCcceeeecccccceE-EE-C---C--EEEEEcCCCeEEEE-ECCC-CCEEEEec--CCCccCC
Confidence            7762        1111111       112221 22 1   3  5666666665 555 9998 65443322  2222221


Q ss_pred             EEeCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291          259 SIDESCNGGISGGADQKIVLYNLDHSTYVLF  289 (314)
Q Consensus       259 ~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~  289 (314)
                       ....+..|+.++.++.|..||+++++.+++
T Consensus       208 -~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  208 -PSVDGGTLYVTSSDGRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             -EECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred             -ceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence             345566777777999999999999998874

...

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.01  E-value=8.6e-07  Score=69.72  Aligned_cols=230  Identities=10%  Similarity=0.072  Sum_probs=130.7

Q ss_pred             CCeEEEEeCCCCe-EEEEEeccCCcccEEEEEEcccCCCCeEEEeecC---CeEEEEeCCC--CCCCCCCeeeeecceee
Q 021291           39 GGELRIWDTVQHR-TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD---GTVKCWDIEN--GGLSSNPSLTIKTNSYH  112 (314)
Q Consensus        39 dg~v~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~v~iwd~~~--~~~~~~~~~~~~~~~~~  112 (314)
                      +.-|.+|++++.. .+..++.-.....++-|+|+|  +.+.|.++-.+   |.|.-|.++.  +++...........+..
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~--~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~   92 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNP--DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPC   92 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECC--CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCe
Confidence            4569999988422 222222111124489999999  88889887654   6777777764  44321101112222222


Q ss_pred             EEEeeeeeccccccccCCCCcceeeccCCceee---------------ecCCCCCC-ceeccCCCceEEEeecCcCeEEE
Q 021291          113 FCKLSLVKEPYANAKQANEPKDCYEREVGETVD---------------TDSLCDSK-DDVPAEGPKYMAVAGEQLSEVEI  176 (314)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~-~~~~~~~~~~~~~~g~~d~~i~v  176 (314)
                      ...++..+..........+...++.+.....+.               .....|.. ..+.|+++++++..=+.| .|.+
T Consensus        93 yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri~~  171 (346)
T COG2706          93 YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD-RIFL  171 (346)
T ss_pred             EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc-eEEE
Confidence            223333333334444445555555553321110               01112222 778899988876554544 6999


Q ss_pred             EecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecC-----
Q 021291          177 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH-----  251 (314)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h-----  251 (314)
                      |++..+.....-.        .+. +...-..-+. |+|+   ++...+..-.+++|.+|........+..++.+     
T Consensus       172 y~~~dg~L~~~~~--------~~v-~~G~GPRHi~-FHpn---~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~  238 (346)
T COG2706         172 YDLDDGKLTPADP--------AEV-KPGAGPRHIV-FHPN---GKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPE  238 (346)
T ss_pred             EEcccCccccccc--------ccc-CCCCCcceEE-EcCC---CcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcc
Confidence            9999776433222        111 1222344555 9998   66555667779999999998743444444432     


Q ss_pred             ----CcceEEEEEeCCCCeEEEecC-CCcEEEEecCCC
Q 021291          252 ----LEPVLCLSIDESCNGGISGGA-DQKIVLYNLDHS  284 (314)
Q Consensus       252 ----~~~v~~~~~~~~~~~l~s~s~-dg~i~iw~~~~~  284 (314)
                          ......|..+++|++|.++.. ...|-+|.++..
T Consensus       239 dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~  276 (346)
T COG2706         239 DFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD  276 (346)
T ss_pred             ccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence                235667788999999876643 447888877655

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.98  E-value=1.5e-07  Score=70.83  Aligned_cols=197  Identities=11%  Similarity=0.002  Sum_probs=118.3

Q ss_pred             EEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceee
Q 021291           33 LFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYH  112 (314)
Q Consensus        33 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  112 (314)
                      +..++.|.++++.+++-+.....  .|...-.+.++++++  ++.++++.+....|..|.+...................
T Consensus       131 ~~i~sndht~k~~~~~~~s~~~~--~h~~~~~~ns~~~sn--d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~g  206 (344)
T KOG4532|consen  131 LNIASNDHTGKTMVVSGDSNKFA--VHNQNLTQNSLHYSN--DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHG  206 (344)
T ss_pred             eeeccCCcceeEEEEecCcccce--eeccccceeeeEEcC--CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCc
Confidence            55567777777777654332222  232212278899999  99999999999999999987643211101111111112


Q ss_pred             EEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccc
Q 021291          113 FCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNS  192 (314)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~  192 (314)
                      ++                                       .+|+....  ..+.+..||++.|||++..........  
T Consensus       207 F~---------------------------------------~S~s~~~~--~FAv~~Qdg~~~I~DVR~~~tpm~~~s--  243 (344)
T KOG4532|consen  207 FY---------------------------------------NSFSENDL--QFAVVFQDGTCAIYDVRNMATPMAEIS--  243 (344)
T ss_pred             ee---------------------------------------eeeccCcc--eEEEEecCCcEEEEEecccccchhhhc--
Confidence            21                                       34555543  333678899999999997665444332  


Q ss_pred             cCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeee-------cCCcc-eEEEEEeCCC
Q 021291          193 CGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK-------VHLEP-VLCLSIDESC  264 (314)
Q Consensus       193 ~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~-------~h~~~-v~~~~~~~~~  264 (314)
                        ....|   +.+.+..+. |+|-++.+  +|+..-.-+.+.+.|+++ ....+.+.       .|... |..-.|+.++
T Consensus       244 --strp~---hnGa~R~c~-Fsl~g~lD--LLf~sEhfs~~hv~D~R~-~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n  314 (344)
T KOG4532|consen  244 --STRPH---HNGAFRVCR-FSLYGLLD--LLFISEHFSRVHVVDTRN-YVNHQVIVIPDDVERKHNTQHIFGTNFNNEN  314 (344)
T ss_pred             --ccCCC---CCCceEEEE-ecCCCcce--EEEEecCcceEEEEEccc-CceeeEEecCccccccccccccccccccCCC
Confidence              11122   567777777 99876533  455444557899999998 44333222       23333 7777786666


Q ss_pred             CeEEEecCCCcEEEEecCCCee
Q 021291          265 NGGISGGADQKIVLYNLDHSTY  286 (314)
Q Consensus       265 ~~l~s~s~dg~i~iw~~~~~~~  286 (314)
                      ..+.+.+.+ .+.-|++.....
T Consensus       315 ~s~~v~~e~-~~ae~ni~srsR  335 (344)
T KOG4532|consen  315 ESNDVKNEL-QGAEYNILSRSR  335 (344)
T ss_pred             cccccccch-hhheeeccccce
Confidence            655555544 366677766544

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.97  E-value=1.3e-09  Score=94.53  Aligned_cols=198  Identities=18%  Similarity=0.289  Sum_probs=130.6

Q ss_pred             CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeec-CC-
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-DG-   86 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg-   86 (314)
                      +..++|+.|+..-+|++|+-+.++|+.|+..|.|+++++.+|........|..+  |+-+.-+.  +|..+++.+. .. 
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~Sa--vT~vePs~--dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSA--VTLVEPSV--DGSTQLTSSSSSSP 1167 (1516)
T ss_pred             ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccc--cccccccC--CcceeeeeccccCc
Confidence            567788999999999999999999999999999999999999999999999855  99998888  8887775544 32 


Q ss_pred             eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC-------ceeccC
Q 021291           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-------DDVPAE  159 (314)
Q Consensus        87 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~  159 (314)
                      -..+|++...-   .+..++...  ....|+-. .........+....+|++.+.......+.+...       ..|+|+
T Consensus      1168 lsaLW~~~s~~---~~~Hsf~ed--~~vkFsn~-~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~ 1241 (1516)
T KOG1832|consen 1168 LSALWDASSTG---GPRHSFDED--KAVKFSNS-LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPC 1241 (1516)
T ss_pred             hHHHhcccccc---Ccccccccc--ceeehhhh-HHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCC
Confidence            57899987521   112222221  11222211 112222333344566777666554443332211       789999


Q ss_pred             CCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEcc
Q 021291          160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR  239 (314)
Q Consensus       160 ~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~  239 (314)
                      ...++     .||  .+||.+..+.+..|.        .......+      .|+|.   |. -++..+     .|||++
T Consensus      1242 D~LIl-----ndG--vLWDvR~~~aIh~FD--------~ft~~~~G------~FHP~---g~-eVIINS-----EIwD~R 1291 (1516)
T KOG1832|consen 1242 DTLIL-----NDG--VLWDVRIPEAIHRFD--------QFTDYGGG------GFHPS---GN-EVIINS-----EIWDMR 1291 (1516)
T ss_pred             cceEe-----eCc--eeeeeccHHHHhhhh--------hheecccc------cccCC---Cc-eEEeec-----hhhhhH
Confidence            86443     255  689999998888887        33222222      39998   44 455544     389999


Q ss_pred             CCCCceEe
Q 021291          240 NPGIPLTA  247 (314)
Q Consensus       240 ~~~~~~~~  247 (314)
                      + -+.++.
T Consensus      1292 T-F~lLh~ 1298 (1516)
T KOG1832|consen 1292 T-FKLLHS 1298 (1516)
T ss_pred             H-HHHHhc
Confidence            7 554443

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=1.4e-07  Score=74.86  Aligned_cols=85  Identities=19%  Similarity=0.231  Sum_probs=72.1

Q ss_pred             CceEEecCCCCceeEEEEccCCC-EEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCe
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (314)
                      +..+.+.+|...|..++|+|..+ ++..++.+..|+|.|+++...+..+..+   ..+++++|.-. +.++++.|...|.
T Consensus       184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~---~~~wSC~wDld-e~h~IYaGl~nG~  259 (463)
T KOG1645|consen  184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY---NQIWSCCWDLD-ERHVIYAGLQNGM  259 (463)
T ss_pred             chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc---CCceeeeeccC-CcceeEEeccCce
Confidence            34556778889999999999665 7888999999999999999888888777   45999999874 4577888999999


Q ss_pred             EEEEeCCCCC
Q 021291           88 VKCWDIENGG   97 (314)
Q Consensus        88 v~iwd~~~~~   97 (314)
                      |.|||++..+
T Consensus       260 VlvyD~R~~~  269 (463)
T KOG1645|consen  260 VLVYDMRQPE  269 (463)
T ss_pred             EEEEEccCCC
Confidence            9999998765

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.97  E-value=3.3e-06  Score=68.89  Aligned_cols=128  Identities=17%  Similarity=0.136  Sum_probs=93.3

Q ss_pred             ceeccCCCceEEEeecCcC-eEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCc
Q 021291          154 DDVPAEGPKYMAVAGEQLS-EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS  232 (314)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~  232 (314)
                      ..+..+++..+  .|..|| .+-+||..+++..+...             .-+.+.++. .+|+   |+ +++++.....
T Consensus       365 ~r~~~~~e~~v--igt~dgD~l~iyd~~~~e~kr~e~-------------~lg~I~av~-vs~d---GK-~~vvaNdr~e  424 (668)
T COG4946         365 RRIQVDPEGDV--IGTNDGDKLGIYDKDGGEVKRIEK-------------DLGNIEAVK-VSPD---GK-KVVVANDRFE  424 (668)
T ss_pred             EEEccCCcceE--EeccCCceEEEEecCCceEEEeeC-------------CccceEEEE-EcCC---Cc-EEEEEcCceE
Confidence            44555555444  466777 89999999887544333             356788887 9998   55 8999999999


Q ss_pred             EEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCC----cEEEEecCCCeeeEee--e----eeeecCCCcee
Q 021291          233 ILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQ----KIVLYNLDHSTYVLFG--I----GFVCDQEGNKF  302 (314)
Q Consensus       233 i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg----~i~iw~~~~~~~~~~~--~----~~~~~~~~~~~  302 (314)
                      |.+.|+.+ +.+...-+...+-|+.++|+|+++++|-+=-+|    .|+++|+..++.....  .    .-+++|+++.+
T Consensus       425 l~vididn-gnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryL  503 (668)
T COG4946         425 LWVIDIDN-GNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYL  503 (668)
T ss_pred             EEEEEecC-CCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEE
Confidence            99999998 666555555677899999999999998876665    5899999987754431  1    12356666654

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.95  E-value=6.6e-07  Score=67.51  Aligned_cols=205  Identities=10%  Similarity=0.049  Sum_probs=123.9

Q ss_pred             EEEEcc-----CCCEEEEecCCCeEEEEeCCCCeEEEEE-eccCCcccEEEEE-EcccCCCCeEEEeecCCeEEEEeCCC
Q 021291           23 DVCFHQ-----TKPILFAGTTGGELRIWDTVQHRTVSSS-WVHSAAHGIVSVA-TGPSIGLNKVISQGRDGTVKCWDIEN   95 (314)
Q Consensus        23 ~~~~~~-----~~~~l~s~~~dg~v~iwd~~~~~~~~~~-~~~~~~~~v~~~~-~~~~~~~~~l~s~~~dg~v~iwd~~~   95 (314)
                      .+.|-|     .-.+||.|+.-|...+|...+.+....+ ..+..  .|+-+. +..  ..-.+..++.|.++++.+++.
T Consensus        72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn--~v~~~~r~cd--~~~~~~i~sndht~k~~~~~~  147 (344)
T KOG4532|consen   72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNN--DVTLVKRYCD--LKFPLNIASNDHTGKTMVVSG  147 (344)
T ss_pred             cccccchHhhccccEEEeccccceeeeecccCcccceeeeccccc--chhhhhhhcc--cccceeeccCCcceeEEEEec
Confidence            355665     2348999999999999998865433222 22321  122111 111  224567788899999999876


Q ss_pred             CCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEE
Q 021291           96 GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVE  175 (314)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~  175 (314)
                      +....    ..+.....  ..+                                    +++++++.. +++.|. ...|.
T Consensus       148 ~s~~~----~~h~~~~~--~ns------------------------------------~~~snd~~~-~~~Vgd-s~~Vf  183 (344)
T KOG4532|consen  148 DSNKF----AVHNQNLT--QNS------------------------------------LHYSNDPSW-GSSVGD-SRRVF  183 (344)
T ss_pred             Ccccc----eeeccccc--eee------------------------------------eEEcCCCce-EEEecC-CCcce
Confidence            54322    11111110  001                                    457788764 444454 47899


Q ss_pred             EEecCC-CceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeee----c
Q 021291          176 IWDLNT-AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK----V  250 (314)
Q Consensus       176 vwd~~~-~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~----~  250 (314)
                      +|.+.. ++.+.....       +-   ....-.+.. |+..   .. .+|++..||++.|||++..+.+.....    .
T Consensus       184 ~y~id~~sey~~~~~~-------a~---t~D~gF~~S-~s~~---~~-~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~  248 (344)
T KOG4532|consen  184 RYAIDDESEYIENIYE-------AP---TSDHGFYNS-FSEN---DL-QFAVVFQDGTCAIYDVRNMATPMAEISSTRPH  248 (344)
T ss_pred             EEEeCCccceeeeeEe-------cc---cCCCceeee-eccC---cc-eEEEEecCCcEEEEEecccccchhhhcccCCC
Confidence            998764 333222211       11   111223333 7765   22 899999999999999998777665443    5


Q ss_pred             CCcceEEEEEeCCCC--eEEEecCCCcEEEEecCCCeeeEee
Q 021291          251 HLEPVLCLSIDESCN--GGISGGADQKIVLYNLDHSTYVLFG  290 (314)
Q Consensus       251 h~~~v~~~~~~~~~~--~l~s~s~dg~i~iw~~~~~~~~~~~  290 (314)
                      |.+.+..+.|++.|.  +|+-.-.=+.+.+-|+++++....+
T Consensus       249 hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I  290 (344)
T KOG4532|consen  249 HNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVI  290 (344)
T ss_pred             CCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEE
Confidence            888999999986554  2344444568999999998776653

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.93  E-value=3.7e-07  Score=74.69  Aligned_cols=236  Identities=12%  Similarity=0.099  Sum_probs=140.8

Q ss_pred             CCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC----------
Q 021291           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG----------   86 (314)
Q Consensus        17 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg----------   86 (314)
                      -.-++..++|||.|.+|++....| |.+|.-.....+..+...    .|..+.|+|  ++++|.+=+..+          
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~~~----~V~~~~fSP--~~kYL~tw~~~pi~~pe~e~sp  103 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFRHP----DVKYLDFSP--NEKYLVTWSREPIIEPEIEISP  103 (561)
T ss_pred             cCcchhheeecCcchheehhhccc-eEEccccchhheeeeecC----CceecccCc--ccceeeeeccCCccChhhccCC
Confidence            456788999999999999988876 899998776666555433    399999999  999999866543          


Q ss_pred             -----eEEEEeCCCCCCCCCCeeeeecceee-----EEEeeeeeccccccccCCCCcceeeccCCceee---ecCC--CC
Q 021291           87 -----TVKCWDIENGGLSSNPSLTIKTNSYH-----FCKLSLVKEPYANAKQANEPKDCYEREVGETVD---TDSL--CD  151 (314)
Q Consensus        87 -----~v~iwd~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~  151 (314)
                           .+.+||+.++.++.    .+......     ...++......  .-..+....++.+ ......   ..+.  +-
T Consensus       104 ~~~~n~~~vwd~~sg~iv~----sf~~~~q~~~~Wp~~k~s~~D~y~--ARvv~~sl~i~e~-t~n~~~~p~~~lr~~gi  176 (561)
T COG5354         104 FTSKNNVFVWDIASGMIVF----SFNGISQPYLGWPVLKFSIDDKYV--ARVVGSSLYIHEI-TDNIEEHPFKNLRPVGI  176 (561)
T ss_pred             ccccCceeEEeccCceeEe----eccccCCcccccceeeeeecchhh--hhhccCeEEEEec-CCccccCchhhccccce
Confidence                 49999999987643    22222111     22333332222  2224444555554 211111   1111  11


Q ss_pred             CCceeccCCCceEEE-----eecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEE
Q 021291          152 SKDDVPAEGPKYMAV-----AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA  226 (314)
Q Consensus       152 ~~~~~~~~~~~~~~~-----~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~  226 (314)
                      .+.+|+|.++.--++     .+..++.+++|.+..+..+.+...            ....-..+. |.+.   |..+++-
T Consensus       177 ~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~l------------fk~~~~qLk-W~~~---g~~ll~l  240 (561)
T COG5354         177 LDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNL------------FKVSGVQLK-WQVL---GKYLLVL  240 (561)
T ss_pred             eeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeee------------EeecccEEE-EecC---CceEEEE
Confidence            126777775433211     133467899999886665544321            011223344 6665   4422221


Q ss_pred             e----------ecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEec--CCCcEEEEecCCC
Q 021291          227 G----------YEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG--ADQKIVLYNLDHS  284 (314)
Q Consensus       227 g----------~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s--~dg~i~iw~~~~~  284 (314)
                      .          .....+++++++.  .-+.....-.++|...+|.|.+..+++.+  .+-.+.++|++..
T Consensus       241 ~~t~~ksnKsyfgesnLyl~~~~e--~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N  308 (561)
T COG5354         241 VMTHTKSNKSYFGESNLYLLRITE--RSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN  308 (561)
T ss_pred             EEEeeecccceeccceEEEEeecc--cccceeccccccceeeeecccCCceeEEecccccceeecccccc
Confidence            1          1134688888884  22322325678999999998887765544  6778888888765

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.92  E-value=4.9e-06  Score=78.10  Aligned_cols=230  Identities=10%  Similarity=-0.005  Sum_probs=129.6

Q ss_pred             eEEEEcc-CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCC------------cccEEEEEEcccCCCCeEEEee-cCCe
Q 021291           22 TDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA------------AHGIVSVATGPSIGLNKVISQG-RDGT   87 (314)
Q Consensus        22 ~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~~~l~s~~-~dg~   87 (314)
                      ..+++++ +++++++-+.++.|++||.. ++.+..+.....            -.....|++.+  +++.|+.+. ..+.
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~--~gn~LYVaDt~n~~  647 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA--KKNLLYVADTENHA  647 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeC--CCCEEEEEeCCCce
Confidence            4678887 46677777888999999975 454444432100            01257889988  777666554 4568


Q ss_pred             EEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEe
Q 021291           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA  167 (314)
Q Consensus        88 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (314)
                      |+++|..++..     .++.......  ..          ..++....         ...+....+++++|++..+++ +
T Consensus       648 Ir~id~~~~~V-----~tlag~G~~g--~~----------~~gg~~~~---------~~~ln~P~gVa~dp~~g~LyV-a  700 (1057)
T PLN02919        648 LREIDFVNETV-----RTLAGNGTKG--SD----------YQGGKKGT---------SQVLNSPWDVCFEPVNEKVYI-A  700 (1057)
T ss_pred             EEEEecCCCEE-----EEEeccCccc--CC----------CCCChhhh---------HhhcCCCeEEEEecCCCeEEE-E
Confidence            99999877542     1111110000  00          00000000         000000111778886666665 4


Q ss_pred             ecCcCeEEEEecCCCceeeeecccc-cCCCCCcCC--CCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCc
Q 021291          168 GEQLSEVEIWDLNTAERCTRLHQNS-CGGSPNFSS--KGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (314)
Q Consensus       168 g~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~h~~--~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~  244 (314)
                      ...++.|++||..++... .+.... .....++..  ..-.....++ ++|+   |..++++...++.|++||+.+ +..
T Consensus       701 d~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIa-vspd---G~~LYVADs~n~~Irv~D~~t-g~~  774 (1057)
T PLN02919        701 MAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGIS-LSPD---LKELYIADSESSSIRALDLKT-GGS  774 (1057)
T ss_pred             ECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEE-EeCC---CCEEEEEECCCCeEEEEECCC-CcE
Confidence            555789999999876543 222100 000001100  0112345566 9987   443666777789999999986 321


Q ss_pred             eEee-------------ecC--------CcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeee
Q 021291          245 LTAM-------------KVH--------LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYV  287 (314)
Q Consensus       245 ~~~~-------------~~h--------~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~  287 (314)
                      ....             ...        -.....++++++|..+++-+.++.|++||.+++...
T Consensus       775 ~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~  838 (1057)
T PLN02919        775 RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT  838 (1057)
T ss_pred             EEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE
Confidence            1100             000        112368899999998899999999999999877544

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.91  E-value=5.1e-08  Score=77.22  Aligned_cols=157  Identities=11%  Similarity=0.158  Sum_probs=97.3

Q ss_pred             eeEEEEccCCCEEEEecCCCeEEEEeCCCCe----EEEEEeccCCcccEEEEEEcccCCCCeEE---EeecCCeEEEEeC
Q 021291           21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHR----TVSSSWVHSAAHGIVSVATGPSIGLNKVI---SQGRDGTVKCWDI   93 (314)
Q Consensus        21 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~---s~~~dg~v~iwd~   93 (314)
                      +..+.+++++++||.+..+....+++.....    ++........+   ..+.|..  +.....   .+++...+.+|..
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~---~ai~~~~--~~~sv~v~dkagD~~~~di~s~  139 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRP---TAISFIR--EDTSVLVADKAGDVYSFDILSA  139 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCc---ceeeeee--ccceEEEEeecCCceeeeeecc
Confidence            3445677889999999888887777765432    33333333322   3333433  223333   3344455555555


Q ss_pred             CCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCceEEEeec
Q 021291           94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGE  169 (314)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~  169 (314)
                      ..+.+..                                               ..+|-.    ++|+||++.++  ++.
T Consensus       140 ~~~~~~~-----------------------------------------------~lGhvSml~dVavS~D~~~Ii--taD  170 (390)
T KOG3914|consen  140 DSGRCEP-----------------------------------------------ILGHVSMLLDVAVSPDDQFII--TAD  170 (390)
T ss_pred             cccCcch-----------------------------------------------hhhhhhhhheeeecCCCCEEE--Eec
Confidence            5433211                                               111111    67999997655  788


Q ss_pred             CcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeee
Q 021291          170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK  249 (314)
Q Consensus       170 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~  249 (314)
                      .|..|++-.......+..|..       ||..    .+..+. .-++    + .|++|+.|++|++||+++ ++.+.++.
T Consensus       171 RDEkIRvs~ypa~f~Iesfcl-------GH~e----FVS~is-l~~~----~-~LlS~sGD~tlr~Wd~~s-gk~L~t~d  232 (390)
T KOG3914|consen  171 RDEKIRVSRYPATFVIESFCL-------GHKE----FVSTIS-LTDN----Y-LLLSGSGDKTLRLWDITS-GKLLDTCD  232 (390)
T ss_pred             CCceEEEEecCcccchhhhcc-------ccHh----heeeee-eccC----c-eeeecCCCCcEEEEeccc-CCcccccc
Confidence            899999988776666666665       7744    565555 5543    3 689999999999999998 66655543

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.87  E-value=9.2e-07  Score=73.31  Aligned_cols=267  Identities=12%  Similarity=0.119  Sum_probs=138.4

Q ss_pred             eEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeec-----------CCeEEE
Q 021291           22 TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-----------DGTVKC   90 (314)
Q Consensus        22 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-----------dg~v~i   90 (314)
                      +-+.|||.|.||+|--.-| |.+|--++-..++.+. |.   .|.-+.|||  ..++|+|=+.           ...++|
T Consensus       214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp---~Vq~idfSP--~EkYLVT~s~~p~~~~~~d~e~~~l~I  286 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP---GVQFIDFSP--NEKYLVTYSPEPIIVEEDDNEGQQLII  286 (698)
T ss_pred             eeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC---CceeeecCC--ccceEEEecCCccccCcccCCCceEEE
Confidence            4589999999999998887 8899866655555553 42   389999999  8899998653           257999


Q ss_pred             EeCCCCCCCCCCeeeee-cce--eeEEEeeeeeccccccccCCCCcceeeccCCceeee---cCCCCCCceeccCCCceE
Q 021291           91 WDIENGGLSSNPSLTIK-TNS--YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDT---DSLCDSKDDVPAEGPKYM  164 (314)
Q Consensus        91 wd~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  164 (314)
                      ||+.+|.+.+  .+... ...  -....++......+....  ....++.......+..   ...+-.+.+|+|.++.+.
T Consensus       287 WDI~tG~lkr--sF~~~~~~~~~WP~frWS~DdKy~Arm~~--~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llA  362 (698)
T KOG2314|consen  287 WDIATGLLKR--SFPVIKSPYLKWPIFRWSHDDKYFARMTG--NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLA  362 (698)
T ss_pred             EEccccchhc--ceeccCCCccccceEEeccCCceeEEecc--ceEEEEecCceeeecccccCCccccCcccCCCcceEE
Confidence            9999998755  22221 111  111222222222222111  2222222222111111   112222266666653221


Q ss_pred             EEeecCc---CeEEEEecCC----------------------Cceeeeeccc-ccC-----------------CCCCcCC
Q 021291          165 AVAGEQL---SEVEIWDLNT----------------------AERCTRLHQN-SCG-----------------GSPNFSS  201 (314)
Q Consensus       165 ~~~g~~d---~~i~vwd~~~----------------------~~~~~~~~~~-~~~-----------------~~~~h~~  201 (314)
                      .-+-..+   ..+.+-.+.+                      |..++..... ...                 ...-..-
T Consensus       363 Ywtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v  442 (698)
T KOG2314|consen  363 YWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV  442 (698)
T ss_pred             EEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee
Confidence            1110000   0111111111                      1111100000 000                 0000011


Q ss_pred             CCCceeeeEEEecCCCCCCceEEEEeec-CCcEEEEEccC-CCC--ceEeeecCCcceEEEEEeCCCCeEEEe---cCCC
Q 021291          202 KGRGMCMAVQAYLPSKSQGFVNVLAGYE-DGSILVWDIRN-PGI--PLTAMKVHLEPVLCLSIDESCNGGISG---GADQ  274 (314)
Q Consensus       202 ~~~~~~~~~~~~~p~~~~g~~~l~~g~~-dg~i~vwd~~~-~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~---s~dg  274 (314)
                      +....+...+ |.|.+  +++.+++|.. ..++.+|.+.+ ...  .+..+..  ...+.+.|+|.|++++.+   |..|
T Consensus       443 elke~vi~Fa-WEP~g--dkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g  517 (698)
T KOG2314|consen  443 ELKESVIAFA-WEPHG--DKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRG  517 (698)
T ss_pred             ecchheeeee-eccCC--CeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEeccccc
Confidence            2234566666 88873  2334444433 35688888873 222  3334432  556889999999998665   4578


Q ss_pred             cEEEEecCCCeeeE-------eeeeeeecCCCceece
Q 021291          275 KIVLYNLDHSTYVL-------FGIGFVCDQEGNKFGT  304 (314)
Q Consensus       275 ~i~iw~~~~~~~~~-------~~~~~~~~~~~~~~~~  304 (314)
                      .+.++|++......       .......+|.|+++.+
T Consensus       518 ~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT  554 (698)
T KOG2314|consen  518 DLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVT  554 (698)
T ss_pred             ceEEEecchhhhhhccCccccccccceECCCCCEEEE
Confidence            89999998532222       2344567899988765

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.85  E-value=9e-06  Score=62.23  Aligned_cols=72  Identities=11%  Similarity=0.159  Sum_probs=51.4

Q ss_pred             EEEEccCCCEEEEecCCCeEEEEeCCCC--eEEEEEeccCCccc-EEEEEEcccCCCCeEEEeecCCeEEEEeCCCCC
Q 021291           23 DVCFHQTKPILFAGTTGGELRIWDTVQH--RTVSSSWVHSAAHG-IVSVATGPSIGLNKVISQGRDGTVKCWDIENGG   97 (314)
Q Consensus        23 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~-v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~   97 (314)
                      .++.+.+|++||. -.|..|.|-..++.  ..+.+.+.++.+.+ =..++|+|  |+..||.+...|+|+++|+....
T Consensus         2 ~~~~~~~Gk~lAi-~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp--D~tlLa~a~S~G~i~vfdl~g~~   76 (282)
T PF15492_consen    2 HLALSSDGKLLAI-LQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP--DCTLLAYAESTGTIRVFDLMGSE   76 (282)
T ss_pred             ceeecCCCcEEEE-EeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC--CCcEEEEEcCCCeEEEEecccce
Confidence            3567788987775 46677888776543  23333343433222 46799999  99999999999999999998654

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.84  E-value=2.8e-07  Score=79.21  Aligned_cols=212  Identities=10%  Similarity=0.110  Sum_probs=130.7

Q ss_pred             CCceEEecCCCCceeEEEEccCC------------CEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCC
Q 021291            8 PDPVAVLRGHRASVTDVCFHQTK------------PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIG   75 (314)
Q Consensus         8 ~~~~~~l~~h~~~v~~~~~~~~~------------~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   75 (314)
                      .+.++++..|...|+.+.|.|-.            -+||++...|.|.+||...+..+..++.+.  ++|..++|-+..+
T Consensus        45 ~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~--~~~qdl~W~~~rd  122 (1062)
T KOG1912|consen   45 LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSN--DSVQDLCWVPARD  122 (1062)
T ss_pred             hhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCC--cchhheeeeeccC
Confidence            36788889999999999998731            157888889999999999988888888777  5599999987533


Q ss_pred             -C-CeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCC---------------Ccceeec
Q 021291           76 -L-NKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANE---------------PKDCYER  138 (314)
Q Consensus        76 -~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~  138 (314)
                       . ..|+.-....+|.+|+..+|+..++  +...........+.+...........++               ......+
T Consensus       123 ~Srd~LlaIh~ss~lvLwntdtG~k~Wk--~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI  200 (1062)
T KOG1912|consen  123 DSRDVLLAIHGSSTLVLWNTDTGEKFWK--YDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQI  200 (1062)
T ss_pred             cchheeEEecCCcEEEEEEccCCceeec--cccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEE
Confidence             2 4566667778999999999987652  1111111111111111111111111111               1111111


Q ss_pred             cCC--c-----------eeeecCCCCCC-------ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCC
Q 021291          139 EVG--E-----------TVDTDSLCDSK-------DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPN  198 (314)
Q Consensus       139 ~~~--~-----------~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~  198 (314)
                      ...  .           ......+....       ++|+|.-+++++++-  ...+.++|++-..++.....+       
T Consensus       201 ~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~--prellv~dle~~~~l~vvpie-------  271 (1062)
T KOG1912|consen  201 TSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITF--PRELLVFDLEYECCLAVVPIE-------  271 (1062)
T ss_pred             ecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEe--ccceEEEcchhhceeEEEEec-------
Confidence            111  0           00000000000       677888888776543  478999999988888777642       


Q ss_pred             cCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccC
Q 021291          199 FSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (314)
Q Consensus       199 h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~  240 (314)
                           ++.+--+. +-|+.. .. .+++...||.+.+|-.+.
T Consensus       272 -----r~~akfv~-vlP~~~-rd-~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  272 -----RGGAKFVD-VLPDPR-RD-ALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             -----cCCcceeE-eccCCC-cc-eEEEEecCCeEEEEEeec
Confidence                 22333344 778744 33 899999999999997664

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.83  E-value=2.3e-07  Score=81.06  Aligned_cols=184  Identities=14%  Similarity=0.144  Sum_probs=127.0

Q ss_pred             CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeec
Q 021291           29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKT  108 (314)
Q Consensus        29 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~  108 (314)
                      ++..++-|+....+..+|+.+.+..+......  ..|.-|..+    ++.+.+|...|+|.+-|.++.+.+.    ++..
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a--~~v~imR~N----nr~lf~G~t~G~V~LrD~~s~~~ih----t~~a  215 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSA--SGVTIMRYN----NRNLFCGDTRGTVFLRDPNSFETIH----TFDA  215 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccC--CceEEEEec----CcEEEeecccceEEeecCCcCceee----eeec
Confidence            34457777777778889998887776665444  237777764    4899999999999999999886544    4444


Q ss_pred             ceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeec--------CcCeEEEEecC
Q 021291          109 NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE--------QLSEVEIWDLN  180 (314)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--------~d~~i~vwd~~  180 (314)
                      +......                                        |+-.|+ +++++|-        .|.-|+|||+|
T Consensus       216 Hs~siSD----------------------------------------fDv~GN-lLitCG~S~R~~~l~~D~FvkVYDLR  254 (1118)
T KOG1275|consen  216 HSGSISD----------------------------------------FDVQGN-LLITCGYSMRRYNLAMDPFVKVYDLR  254 (1118)
T ss_pred             cccceee----------------------------------------eeccCC-eEEEeecccccccccccchhhhhhhh
Confidence            4443332                                        444444 3333432        26779999999


Q ss_pred             CCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCc---eEeeecCCcceEE
Q 021291          181 TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP---LTAMKVHLEPVLC  257 (314)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~---~~~~~~h~~~v~~  257 (314)
                      +.+.+.-+..        +..    + .-+ .|.|.-+.   .+++.+..|...+-|..+...+   +..+......+..
T Consensus       255 mmral~PI~~--------~~~----P-~fl-rf~Psl~t---~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~  317 (1118)
T KOG1275|consen  255 MMRALSPIQF--------PYG----P-QFL-RFHPSLTT---RLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISA  317 (1118)
T ss_pred             hhhccCCccc--------ccC----c-hhh-hhcccccc---eEEEEecccceeeccccccCCCccceeEEccCCCccee
Confidence            9887665552        211    1 112 38887442   6888889999999994432333   3334444556999


Q ss_pred             EEEeCCCCeEEEecCCCcEEEEe
Q 021291          258 LSIDESCNGGISGGADQKIVLYN  280 (314)
Q Consensus       258 ~~~~~~~~~l~s~s~dg~i~iw~  280 (314)
                      +++++++..++.|..+|.|.+|.
T Consensus       318 fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  318 FDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             EEecCCCceEEEecccCcEeeec
Confidence            99999999999999999999997

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.82  E-value=1.1e-05  Score=66.06  Aligned_cols=256  Identities=15%  Similarity=0.126  Sum_probs=144.3

Q ss_pred             CCCCceeEEEEccCCCEEEEecCCC-eEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCC
Q 021291           16 GHRASVTDVCFHQTKPILFAGTTGG-ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE   94 (314)
Q Consensus        16 ~h~~~v~~~~~~~~~~~l~s~~~dg-~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~   94 (314)
                      +|.+.|.-..+.-+++-++.|..|| .+-|+|.++++... +...-  +.|.++..++  +|++++.+.....|.+.|+.
T Consensus       357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~l--g~I~av~vs~--dGK~~vvaNdr~el~vidid  431 (668)
T COG4946         357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDL--GNIEAVKVSP--DGKKVVVANDRFELWVIDID  431 (668)
T ss_pred             CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCc--cceEEEEEcC--CCcEEEEEcCceEEEEEEec
Confidence            5778888888888888899999999 89999988776544 44444  4499999999  99999999998999999999


Q ss_pred             CCCCCCCCeeeeecce--eeEEEeeeeecccccc---ccCCCCcceeeccCCceeeecCCCCCC--ceeccCCCceEEEe
Q 021291           95 NGGLSSNPSLTIKTNS--YHFCKLSLVKEPYANA---KQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMAVA  167 (314)
Q Consensus        95 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  167 (314)
                      ++....    .-+...  .....+++.....+..   ........++++..++......+...+  -+|.|+++++...+
T Consensus       432 ngnv~~----idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         432 NGNVRL----IDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             CCCeeE----ecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence            986421    111111  1111222222222222   222344556666666655444433333  88999999886654


Q ss_pred             e-----cCcCeEEEEecCCCc--eeeeecccccCCC-----CCcCC----CCCceeeeEEEecCCCCCCceEEEEeecCC
Q 021291          168 G-----EQLSEVEIWDLNTAE--RCTRLHQNSCGGS-----PNFSS----KGRGMCMAVQAYLPSKSQGFVNVLAGYEDG  231 (314)
Q Consensus       168 g-----~~d~~i~vwd~~~~~--~~~~~~~~~~~~~-----~~h~~----~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg  231 (314)
                      .     +.|..+.-+....-.  -+..+....-.+.     ...+.    ...+.-..+..|.-+ . +....+++-.+|
T Consensus       508 ~RsLdPs~Drv~fnf~f~~vskPylv~L~~g~~sP~~q~p~~~~~ea~e~dle~ie~r~eP~pVe-e-~dY~sI~~lk~~  585 (668)
T COG4946         508 ARSLDPSNDRVIFNFSFQRVSKPYLVVLGRGYYSPFNQPPDEANSEAGEVDLEGIEDRVEPFPVE-E-GDYRSIAGLKNG  585 (668)
T ss_pred             ccccCCCCCeeEEEEEEeeeccceEEEecCCCCChhhcCchhcCccccceehhhhcccccccccC-c-cceeEeeecCCC
Confidence            3     223333333222111  1111110000000     00000    001111111112212 1 333566777777


Q ss_pred             cEEEEEccCCCCceE------------e--ee-----cCCcceEEEEEeCCCCeEEEecCCCcEEEEecCC
Q 021291          232 SILVWDIRNPGIPLT------------A--MK-----VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH  283 (314)
Q Consensus       232 ~i~vwd~~~~~~~~~------------~--~~-----~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~  283 (314)
                      .|.++...-.+...+            .  ++     .-...+.++..++|+..++. -.||.+++++++.
T Consensus       586 killfs~pi~Gefs~yy~gq~~kG~l~~ydletkk~~e~k~nvss~rlS~D~s~ilv-k~d~kl~~f~vek  655 (668)
T COG4946         586 KILLFSYPIHGEFSQYYWGQPEKGRLEKYDLETKKVEEYKDNVSSFRLSSDGSKILV-KLDGKLRLFDVEK  655 (668)
T ss_pred             eEEEEEeeccchhhhhhcCCCccceEEEEecchhhHHHHhcccceEEEcCCCCEEEE-EeCCeEEEEeccc
Confidence            777776542222111            1  11     12357888999999999887 7899999999986

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.81  E-value=1.4e-08  Score=78.88  Aligned_cols=116  Identities=18%  Similarity=0.177  Sum_probs=82.4

Q ss_pred             ceeccCCCceEEEeecCcCeEEEEecCCC-----ceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEee
Q 021291          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTA-----ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY  228 (314)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~i~vwd~~~~-----~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~  228 (314)
                      ..|.-.++  ++..|..+|.|..+|++.+     .+...+-         |    .+.+++++ .-..  +++ +|++.+
T Consensus       258 lQf~~s~n--Lv~~GcRngeI~~iDLR~rnqG~~~~a~rly---------h----~Ssvtslq-~Lq~--s~q-~LmaS~  318 (425)
T KOG2695|consen  258 LQFAGSDN--LVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY---------H----DSSVTSLQ-ILQF--SQQ-KLMASD  318 (425)
T ss_pred             HHhcccCC--eeEecccCCcEEEEEeeecccCCCcceEEEE---------c----Ccchhhhh-hhcc--ccc-eEeecc
Confidence            34444443  3447888999999999975     2333333         2    34555555 2221  133 899999


Q ss_pred             cCCcEEEEEccCCCCc---eEeeecCCcceEEEEE--eCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291          229 EDGSILVWDIRNPGIP---LTAMKVHLEPVLCLSI--DESCNGGISGGADQKIVLYNLDHSTYVLF  289 (314)
Q Consensus       229 ~dg~i~vwd~~~~~~~---~~~~~~h~~~v~~~~~--~~~~~~l~s~s~dg~i~iw~~~~~~~~~~  289 (314)
                      .+|+|++||.+. -++   +.++.||...-.-+-+  ++....++++++|...|||.++.+..+-.
T Consensus       319 M~gkikLyD~R~-~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~t  383 (425)
T KOG2695|consen  319 MTGKIKLYDLRA-TKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCT  383 (425)
T ss_pred             CcCceeEeeehh-hhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeec
Confidence            999999999996 555   8888899765444444  66677899999999999999999987764

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.80  E-value=1.3e-05  Score=67.45  Aligned_cols=234  Identities=15%  Similarity=0.065  Sum_probs=127.4

Q ss_pred             CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeec
Q 021291           29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKT  108 (314)
Q Consensus        29 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~  108 (314)
                      .+..+++++.+|.|..+|..+|+.+.........  ......    ++..++.++.++.|..+|.++++..++    ...
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~--~~~p~v----~~~~v~v~~~~g~l~ald~~tG~~~W~----~~~  133 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERL--SGGVGA----DGGLVFVGTEKGEVIALDAEDGKELWR----AKL  133 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCc--ccceEE----cCCEEEEEcCCCEEEEEECCCCcEeee----ecc
Confidence            4668888999999999999999998876654321  112222    457888888999999999999987552    111


Q ss_pred             ceeeEEEeeeeeccccccccCCCCcceeeccCCceeee-cCCCC-------CCceeccCCCceEEEeecCcCeEEEEecC
Q 021291          109 NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDT-DSLCD-------SKDDVPAEGPKYMAVAGEQLSEVEIWDLN  180 (314)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~~~~~~~~~~~~~g~~d~~i~vwd~~  180 (314)
                      .......... ...........+....++...++..-. .....       ..... .+ ..++  .+..++.+..+|++
T Consensus       134 ~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~-~~-~~v~--~~~~~g~v~ald~~  208 (377)
T TIGR03300       134 SSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI-AD-GGVL--VGFAGGKLVALDLQ  208 (377)
T ss_pred             CceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE-EC-CEEE--EECCCCEEEEEEcc
Confidence            1110000000 011111112223344445444433221 11110       00111 12 2333  45557999999999


Q ss_pred             CCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEE
Q 021291          181 TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSI  260 (314)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~  260 (314)
                      +++.+........   .+... .. ....+. -+|--. +. .+++++.+|.++.||..+ ++.+..... . .......
T Consensus       209 tG~~~W~~~~~~~---~g~~~-~~-~~~~~~-~~p~~~-~~-~vy~~~~~g~l~a~d~~t-G~~~W~~~~-~-~~~~p~~  277 (377)
T TIGR03300       209 TGQPLWEQRVALP---KGRTE-LE-RLVDVD-GDPVVD-GG-QVYAVSYQGRVAALDLRS-GRVLWKRDA-S-SYQGPAV  277 (377)
T ss_pred             CCCEeeeeccccC---CCCCc-hh-hhhccC-CccEEE-CC-EEEEEEcCCEEEEEECCC-CcEEEeecc-C-CccCceE
Confidence            9987654431000   00000 00 000000 011100 22 677788899999999987 766655441 1 1122223


Q ss_pred             eCCCCeEEEecCCCcEEEEecCCCeeeEee
Q 021291          261 DESCNGGISGGADQKIVLYNLDHSTYVLFG  290 (314)
Q Consensus       261 ~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~  290 (314)
                        .+..++.++.||.+..+|..+++.++..
T Consensus       278 --~~~~vyv~~~~G~l~~~d~~tG~~~W~~  305 (377)
T TIGR03300       278 --DDNRLYVTDADGVVVALDRRSGSELWKN  305 (377)
T ss_pred             --eCCEEEEECCCCeEEEEECCCCcEEEcc
Confidence              3346777889999999999999877653

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.80  E-value=1.6e-07  Score=72.21  Aligned_cols=220  Identities=13%  Similarity=0.235  Sum_probs=128.2

Q ss_pred             CceeEEEEccCC--CEEEEecCCCeEEEEeCCCCeE-------------------------------------E----EE
Q 021291           19 ASVTDVCFHQTK--PILFAGTTGGELRIWDTVQHRT-------------------------------------V----SS   55 (314)
Q Consensus        19 ~~v~~~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~-------------------------------------~----~~   55 (314)
                      ..|..+.|..++  ..++..+.|.+|++|.+.....                                     +    ..
T Consensus        86 EKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~r  165 (460)
T COG5170          86 EKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCR  165 (460)
T ss_pred             HHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccce
Confidence            357888888743  4566778999999998754210                                     0    00


Q ss_pred             EeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcce
Q 021291           56 SWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDC  135 (314)
Q Consensus        56 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (314)
                      +....++-.|.++.|+.  |...++++ .|-.|.+|+++-...    .+.+       ..+.+..........       
T Consensus       166 vyaNaH~yhiNSiS~Ns--D~et~lSa-DdLrINLWnl~i~D~----sFnI-------VDiKP~nmeeLteVI-------  224 (460)
T COG5170         166 VYANAHPYHINSISFNS--DKETLLSA-DDLRINLWNLEIIDG----SFNI-------VDIKPHNMEELTEVI-------  224 (460)
T ss_pred             eccccceeEeeeeeecC--chheeeec-cceeeeeccccccCC----ceEE-------EeccCccHHHHHHHH-------
Confidence            11122224578888888  76666665 467899998864321    1111       000000000000000       


Q ss_pred             eeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCcee----eeecccccCCCCCcCCCCCceeeeEE
Q 021291          136 YEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERC----TRLHQNSCGGSPNFSSKGRGMCMAVQ  211 (314)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~----~~~~~~~~~~~~~h~~~~~~~~~~~~  211 (314)
                                      ....|+|...+++..+.+ .|.|++-|+|.....    ..+...........-.+....+..+.
T Consensus       225 ----------------tSaeFhp~~cn~fmYSsS-kG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~k  287 (460)
T COG5170         225 ----------------TSAEFHPEMCNVFMYSSS-KGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFK  287 (460)
T ss_pred             ----------------hhcccCHhHcceEEEecC-CCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceE
Confidence                            004478877777766665 599999999843311    11110000000011122344667777


Q ss_pred             EecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCC------------cceE---EEEEeCCCCeEEEecCCCcE
Q 021291          212 AYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL------------EPVL---CLSIDESCNGGISGGADQKI  276 (314)
Q Consensus       212 ~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~------------~~v~---~~~~~~~~~~l~s~s~dg~i  276 (314)
                       |+|+   |+ ++++-.. -+|++||.+....|+.++.-|.            +.|.   .+.|+++...+++||..+..
T Consensus       288 -Fs~n---gr-yIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNf  361 (460)
T COG5170         288 -FSDN---GR-YILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNF  361 (460)
T ss_pred             -EcCC---Cc-EEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccce
Confidence             9998   66 6666544 5899999998788888886553            2333   46789999999999988887


Q ss_pred             EEEecC
Q 021291          277 VLYNLD  282 (314)
Q Consensus       277 ~iw~~~  282 (314)
                      -++-+.
T Consensus       362 giyp~~  367 (460)
T COG5170         362 GIYPTD  367 (460)
T ss_pred             eeeccc
Confidence            777643

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.80  E-value=3.3e-05  Score=60.74  Aligned_cols=201  Identities=13%  Similarity=0.128  Sum_probs=120.0

Q ss_pred             EEEEcc-CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEc-ccCCCCeEEEeecCCeEEEEeCCCCCCCC
Q 021291           23 DVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATG-PSIGLNKVISQGRDGTVKCWDIENGGLSS  100 (314)
Q Consensus        23 ~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~l~s~~~dg~v~iwd~~~~~~~~  100 (314)
                      +..|.+ ++.++++--..+.|..|+..+++... +....    ...+++. +  + ..|+.+..+ .+.++|..+++...
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~----~~G~~~~~~--~-g~l~v~~~~-~~~~~d~~~g~~~~   74 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG----PNGMAFDRP--D-GRLYVADSG-GIAVVDPDTGKVTV   74 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS----EEEEEEECT--T-SEEEEEETT-CEEEEETTTTEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC----CceEEEEcc--C-CEEEEEEcC-ceEEEecCCCcEEE
Confidence            578888 77788888889999999988765543 33322    5677777 5  5 556666654 45566988875422


Q ss_pred             CCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCc-------Ce
Q 021291          101 NPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL-------SE  173 (314)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d-------~~  173 (314)
                        ...............  .                                 +++.++|. +++......       |.
T Consensus        75 --~~~~~~~~~~~~~~N--D---------------------------------~~vd~~G~-ly~t~~~~~~~~~~~~g~  116 (246)
T PF08450_consen   75 --LADLPDGGVPFNRPN--D---------------------------------VAVDPDGN-LYVTDSGGGGASGIDPGS  116 (246)
T ss_dssp             --EEEEETTCSCTEEEE--E---------------------------------EEE-TTS--EEEEEECCBCTTCGGSEE
T ss_pred             --EeeccCCCcccCCCc--e---------------------------------EEEcCCCC-EEEEecCCCccccccccc
Confidence              222211100000000  0                                 56788887 443222111       56


Q ss_pred             EEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCce------Ee
Q 021291          174 VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL------TA  247 (314)
Q Consensus       174 i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~------~~  247 (314)
                      |..++.. ++.......             -.....++ |+|+   ++.++++-+..+.|..+++...+..+      ..
T Consensus       117 v~~~~~~-~~~~~~~~~-------------~~~pNGi~-~s~d---g~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~  178 (246)
T PF08450_consen  117 VYRIDPD-GKVTVVADG-------------LGFPNGIA-FSPD---GKTLYVADSFNGRIWRFDLDADGGELSNRRVFID  178 (246)
T ss_dssp             EEEEETT-SEEEEEEEE-------------ESSEEEEE-EETT---SSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE
T ss_pred             eEEECCC-CeEEEEecC-------------cccccceE-ECCc---chheeecccccceeEEEeccccccceeeeeeEEE
Confidence            7778877 443333321             22455666 9998   55355677888899999997533312      11


Q ss_pred             eecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291          248 MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF  289 (314)
Q Consensus       248 ~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~  289 (314)
                      +..-....-.++++.+|++.++.-..+.|.+++.+ ++.+..
T Consensus       179 ~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~  219 (246)
T PF08450_consen  179 FPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLRE  219 (246)
T ss_dssp             -SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEE
T ss_pred             cCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEE
Confidence            22222247789999999988877778899999988 665543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.76  E-value=4.2e-08  Score=81.12  Aligned_cols=176  Identities=14%  Similarity=0.153  Sum_probs=110.5

Q ss_pred             EEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCC
Q 021291           53 VSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEP  132 (314)
Q Consensus        53 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (314)
                      +..+.+|..  .|..++-..  +.+.|++++.|++|++|.++...-.         .....|.|..              
T Consensus       728 L~nf~GH~~--~iRai~Aid--NENSFiSASkDKTVKLWSik~EgD~---------~~tsaCQfTY--------------  780 (1034)
T KOG4190|consen  728 LCNFTGHQE--KIRAIAAID--NENSFISASKDKTVKLWSIKPEGDE---------IGTSACQFTY--------------  780 (1034)
T ss_pred             eecccCcHH--HhHHHHhcc--cccceeeccCCceEEEEEeccccCc---------cccceeeeEh--------------
Confidence            345567774  377776655  6689999999999999998753211         1111121111              


Q ss_pred             cceeeccCCceeeecCCCCCC----ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceee
Q 021291          133 KDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCM  208 (314)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  208 (314)
                                      ..|..    +.|-.+.+++ + +  .|+.|.+||.--++.+..+....     .|.  ..+.+.
T Consensus       781 ----------------~aHkk~i~~igfL~~lr~i-~-S--cD~giHlWDPFigr~Laq~~dap-----k~~--a~~~ik  833 (1034)
T KOG4190|consen  781 ----------------QAHKKPIHDIGFLADLRSI-A-S--CDGGIHLWDPFIGRLLAQMEDAP-----KEG--AGGNIK  833 (1034)
T ss_pred             ----------------hhccCcccceeeeecccee-e-e--ccCcceeecccccchhHhhhcCc-----ccC--CCceeE
Confidence                            11111    3344444433 2 2  37899999998888776554210     121  122333


Q ss_pred             eEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeee-----cCCcceEEEEEeCCCCeEEEecCCCcEEEEecCC
Q 021291          209 AVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK-----VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH  283 (314)
Q Consensus       209 ~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~  283 (314)
                      ++-  +-+   ...+++.++...+|+++|.+. ..-..+++     +....+.+++..+.|++++.+=..|.|.+.|.++
T Consensus       834 cl~--nv~---~~iliAgcsaeSTVKl~DaRs-ce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~  907 (1034)
T KOG4190|consen  834 CLE--NVD---RHILIAGCSAESTVKLFDARS-CEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARN  907 (1034)
T ss_pred             ecc--cCc---chheeeeccchhhheeeeccc-ccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCC
Confidence            332  112   221344447889999999997 65555554     3345688999999999999999999999999999


Q ss_pred             CeeeE
Q 021291          284 STYVL  288 (314)
Q Consensus       284 ~~~~~  288 (314)
                      |+.+.
T Consensus       908 G~vIN  912 (1034)
T KOG4190|consen  908 GKVIN  912 (1034)
T ss_pred             Cceec
Confidence            98664

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.75  E-value=9.3e-06  Score=68.62  Aligned_cols=195  Identities=11%  Similarity=0.060  Sum_probs=107.8

Q ss_pred             CCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCe-EEEeec---CCeEEEEeCCCCCCCCCCeeeeecceeeEE
Q 021291           39 GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNK-VISQGR---DGTVKCWDIENGGLSSNPSLTIKTNSYHFC  114 (314)
Q Consensus        39 dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  114 (314)
                      ...|.+-|.+... .+.+....   .+..-.|+|  +++. ++..+.   +..|.++|+.+++...  +.....  ....
T Consensus       168 ~~~l~~~d~dg~~-~~~~~~~~---~~~~p~wSp--DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--lt~~~g--~~~~  237 (419)
T PRK04043        168 KSNIVLADYTLTY-QKVIVKGG---LNIFPKWAN--KEQTAFYYTSYGERKPTLYKYNLYTGKKEK--IASSQG--MLVV  237 (419)
T ss_pred             cceEEEECCCCCc-eeEEccCC---CeEeEEECC--CCCcEEEEEEccCCCCEEEEEECCCCcEEE--EecCCC--cEEe
Confidence            3456666654333 33232222   378899999  9884 554433   3568899998875321  111111  0101


Q ss_pred             EeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEee-cCcCeEEEEecCCCceeeeeccccc
Q 021291          115 KLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG-EQLSEVEIWDLNTAERCTRLHQNSC  193 (314)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~d~~i~vwd~~~~~~~~~~~~~~~  193 (314)
                                                             ..|+|||+.++++.. ..+..|.++|+.+++. ..+.    
T Consensus       238 ---------------------------------------~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT----  273 (419)
T PRK04043        238 ---------------------------------------SDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQIT----  273 (419)
T ss_pred             ---------------------------------------eEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEcc----
Confidence                                                   348999988766433 2235788889887763 3333    


Q ss_pred             CCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCC--cEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEec
Q 021291          194 GGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG--SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG  271 (314)
Q Consensus       194 ~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg--~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s  271 (314)
                          .+..    ...... |+||   |+.++++....+  .|++.|+.. ++..+... ....  ...|+|+|++|+-.+
T Consensus       274 ----~~~~----~d~~p~-~SPD---G~~I~F~Sdr~g~~~Iy~~dl~~-g~~~rlt~-~g~~--~~~~SPDG~~Ia~~~  337 (419)
T PRK04043        274 ----NYPG----IDVNGN-FVED---DKRIVFVSDRLGYPNIFMKKLNS-GSVEQVVF-HGKN--NSSVSTYKNYIVYSS  337 (419)
T ss_pred             ----cCCC----ccCccE-ECCC---CCEEEEEECCCCCceEEEEECCC-CCeEeCcc-CCCc--CceECCCCCEEEEEE
Confidence                1111    122233 9998   553444444444  577778875 44322222 1112  248999999886665


Q ss_pred             CC---------CcEEEEecCCCeeeEe-----eeeeeecCCCceec
Q 021291          272 AD---------QKIVLYNLDHSTYVLF-----GIGFVCDQEGNKFG  303 (314)
Q Consensus       272 ~d---------g~i~iw~~~~~~~~~~-----~~~~~~~~~~~~~~  303 (314)
                      ..         ..|.+.|++++.....     ....+++|+|..+.
T Consensus       338 ~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~~~p~~SPDG~~I~  383 (419)
T PRK04043        338 RETNNEFGKNTFNLYLISTNSDYIRRLTANGVNQFPRFSSDGGSIM  383 (419)
T ss_pred             cCCCcccCCCCcEEEEEECCCCCeEECCCCCCcCCeEECCCCCEEE
Confidence            43         2678888877754321     11245667776543

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.73  E-value=1.2e-07  Score=88.48  Aligned_cols=189  Identities=11%  Similarity=0.165  Sum_probs=121.9

Q ss_pred             CEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecce
Q 021291           31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNS  110 (314)
Q Consensus        31 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~  110 (314)
                      +.+.....++...-|..+-+...  ++.+-  ..|.++.-+|  ...+-+||+.||.|++|....++.+.    ......
T Consensus      2181 ~~~~~~n~~~~~~tq~~~~~~~~--~k~~v--~~v~r~~sHp--~~~~Yltgs~dgsv~~~~w~~~~~v~----~~rt~g 2250 (2439)
T KOG1064|consen 2181 NRFTPSNLPWLGSTQTSRGASVM--IKHPV--ENVRRMTSHP--SDPYYLTGSQDGSVRMFEWGHGQQVV----CFRTAG 2250 (2439)
T ss_pred             ccCCcccCCccccceecccceeE--eeccc--CceeeecCCC--CCceEEecCCCceEEEEeccCCCeEE----EeeccC
Confidence            34444455565655654433222  22233  3388888888  66889999999999999988775422    222211


Q ss_pred             eeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceeeeecc
Q 021291          111 YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQ  190 (314)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~  190 (314)
                      . .. .                                   ....|+.+|+.+-+  +..||.+.+|... .+.....+ 
T Consensus      2251 ~-s~-v-----------------------------------tr~~f~~qGnk~~i--~d~dg~l~l~q~~-pk~~~s~q- 2289 (2439)
T KOG1064|consen 2251 N-SR-V-----------------------------------TRSRFNHQGNKFGI--VDGDGDLSLWQAS-PKPYTSWQ- 2289 (2439)
T ss_pred             c-ch-h-----------------------------------hhhhhcccCCceee--eccCCceeecccC-Ccceeccc-
Confidence            1 00 0                                   00457788876654  3447999999987 34443333 


Q ss_pred             cccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEe---ecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeE
Q 021291          191 NSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG---YEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGG  267 (314)
Q Consensus       191 ~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g---~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l  267 (314)
                             .|...    ..... |-..      .++++   +.++.+.+||...+...-.....|.+.++++++-|..+.|
T Consensus      2290 -------chnk~----~~Df~-Fi~s------~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qll 2351 (2439)
T KOG1064|consen 2290 -------CHNKA----LSDFR-FIGS------LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLL 2351 (2439)
T ss_pred             -------cCCcc----cccee-eeeh------hhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEE
Confidence                   34221    22222 3321      44444   3568899999876454444448999999999999999999


Q ss_pred             EEecCCCcEEEEecCCCeeeE
Q 021291          268 ISGGADQKIVLYNLDHSTYVL  288 (314)
Q Consensus       268 ~s~s~dg~i~iw~~~~~~~~~  288 (314)
                      +|||.+|.|++||++..+...
T Consensus      2352 isggr~G~v~l~D~rqrql~h 2372 (2439)
T KOG1064|consen 2352 ISGGRKGEVCLFDIRQRQLRH 2372 (2439)
T ss_pred             EecCCcCcEEEeehHHHHHHH
Confidence            999999999999998776543

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.73  E-value=1.2e-07  Score=76.34  Aligned_cols=211  Identities=14%  Similarity=0.077  Sum_probs=143.8

Q ss_pred             CCCceeEEEEccCCCEEEEecCCCeEEEEeCCC--C-eEEEEEeccCCcccEEEEEEcccCCCCeEEEeec-CCeEEEEe
Q 021291           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ--H-RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-DGTVKCWD   92 (314)
Q Consensus        17 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~--~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~v~iwd   92 (314)
                      |.+.|+.+.-.. .+++.+++.||.++.|.-..  + +.+..+..|.  ..|.+++.+-  ++-++.|.+. |..++++|
T Consensus         8 hrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL--~~I~sl~~S~--dg~L~~Sv~d~Dhs~KvfD   82 (558)
T KOG0882|consen    8 HRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHL--GVILSLAVSY--DGWLFRSVEDPDHSVKVFD   82 (558)
T ss_pred             ccceeeeEeeeh-hheEEeeecchhhhhcCCCCccceeehhhhHHHH--HHHHhhhccc--cceeEeeccCcccceeEEE
Confidence            788888776653 56899999999999998432  1 3344555666  4488999888  8889999787 99999999


Q ss_pred             CCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccC-CCceEEEeecCc
Q 021291           93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAE-GPKYMAVAGEQL  171 (314)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~d  171 (314)
                      +++-....  .+.+...+...+.+                                       .++. -..+++++...+
T Consensus        83 vEn~Dmin--miKL~~lPg~a~wv---------------------------------------~skGd~~s~IAVs~~~s  121 (558)
T KOG0882|consen   83 VENFDMIN--MIKLVDLPGFAEWV---------------------------------------TSKGDKISLIAVSLFKS  121 (558)
T ss_pred             eeccchhh--hcccccCCCceEEe---------------------------------------cCCCCeeeeEEeecccC
Confidence            98866543  22222222222211                                       1111 122466666678


Q ss_pred             CeEEEEecCCCce-eeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCC-----c-
Q 021291          172 SEVEIWDLNTAER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI-----P-  244 (314)
Q Consensus       172 ~~i~vwd~~~~~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~-----~-  244 (314)
                      +.+.++|-....+ ..-+..       -|    ..++..+. +.|.   +. .+++....|.|.-|....+-+     . 
T Consensus       122 g~i~VvD~~~d~~q~~~fkk-------lH----~sPV~~i~-y~qa---~D-s~vSiD~~gmVEyWs~e~~~qfPr~~l~  185 (558)
T KOG0882|consen  122 GKIFVVDGFGDFCQDGYFKK-------LH----FSPVKKIR-YNQA---GD-SAVSIDISGMVEYWSAEGPFQFPRTNLN  185 (558)
T ss_pred             CCcEEECCcCCcCccceecc-------cc----cCceEEEE-eecc---cc-ceeeccccceeEeecCCCcccCcccccc
Confidence            9999999875542 222221       23    45677776 8887   44 788888899999998872111     1 


Q ss_pred             --------eEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291          245 --------LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF  289 (314)
Q Consensus       245 --------~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~  289 (314)
                              +..+........++.|+|++..+.+-+.|..|+++.+.+++.+..
T Consensus       186 ~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqe  238 (558)
T KOG0882|consen  186 FELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQE  238 (558)
T ss_pred             ccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhh
Confidence                    111222345678999999999999999999999999999987654

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.73  E-value=4.3e-08  Score=76.25  Aligned_cols=130  Identities=15%  Similarity=0.205  Sum_probs=88.5

Q ss_pred             CCCceeEEEEccCCCEEEEecCCCeEEEEeCCCC-----eEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEE
Q 021291           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH-----RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW   91 (314)
Q Consensus        17 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iw   91 (314)
                      -++.|.++.|...+++++.|..+|.|...|++.+     .+...+ -|.  ..|+++..... ++++|++.+.+|+|++|
T Consensus       251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~--Ssvtslq~Lq~-s~q~LmaS~M~gkikLy  326 (425)
T KOG2695|consen  251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHD--SSVTSLQILQF-SQQKLMASDMTGKIKLY  326 (425)
T ss_pred             cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcC--cchhhhhhhcc-ccceEeeccCcCceeEe
Confidence            3567889999988899999999999999999864     233333 355  44888876543 45889999999999999


Q ss_pred             eCCCCCCCCC-CeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecC
Q 021291           92 DIENGGLSSN-PSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ  170 (314)
Q Consensus        92 d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  170 (314)
                      |.+.-++... ..+..+.+......                                      +-+.+.. .+++ +++.
T Consensus       327 D~R~~K~~~~V~qYeGHvN~~a~l~--------------------------------------~~v~~ee-g~I~-s~Gd  366 (425)
T KOG2695|consen  327 DLRATKCKKSVMQYEGHVNLSAYLP--------------------------------------AHVKEEE-GSIF-SVGD  366 (425)
T ss_pred             eehhhhcccceeeeecccccccccc--------------------------------------ccccccc-ceEE-EccC
Confidence            9987665320 01111111111100                                      1133333 3344 4667


Q ss_pred             cCeEEEEecCCCceeeeecc
Q 021291          171 LSEVEIWDLNTAERCTRLHQ  190 (314)
Q Consensus       171 d~~i~vwd~~~~~~~~~~~~  190 (314)
                      |...+||.++.+..+.+++.
T Consensus       367 DcytRiWsl~~ghLl~tipf  386 (425)
T KOG2695|consen  367 DCYTRIWSLDSGHLLCTIPF  386 (425)
T ss_pred             eeEEEEEecccCceeeccCC
Confidence            99999999999999988874

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.70  E-value=2.3e-07  Score=72.31  Aligned_cols=179  Identities=13%  Similarity=0.180  Sum_probs=109.0

Q ss_pred             CCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCe-E--EEEEeccCC---cccEEEEEEcccCCCCeEEEeecCCeEE
Q 021291           16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-T--VSSSWVHSA---AHGIVSVATGPSIGLNKVISQGRDGTVK   89 (314)
Q Consensus        16 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-~--~~~~~~~~~---~~~v~~~~~~~~~~~~~l~s~~~dg~v~   89 (314)
                      +|+-.|+++.++.|+..++++ .|=.|.+|+++--. .  +..++.+.-   ..-|++..|+|. .-+.|+-.+..|+|+
T Consensus       162 aHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~-~cn~f~YSSSKGtIr  239 (433)
T KOG1354|consen  162 AHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPH-HCNVFVYSSSKGTIR  239 (433)
T ss_pred             cceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHh-HccEEEEecCCCcEE
Confidence            688899999999999888875 56679999987432 2  222222211   134889999996 347788888899999


Q ss_pred             EEeCCCCCCCCC--CeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEe
Q 021291           90 CWDIENGGLSSN--PSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA  167 (314)
Q Consensus        90 iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (314)
                      +-|++...+...  .++.....+....-|+                            .....-+++.|+++|++++  +
T Consensus       240 LcDmR~~aLCd~hsKlfEepedp~~rsffs----------------------------eiIsSISDvKFs~sGryil--s  289 (433)
T KOG1354|consen  240 LCDMRQSALCDAHSKLFEEPEDPSSRSFFS----------------------------EIISSISDVKFSHSGRYIL--S  289 (433)
T ss_pred             EeechhhhhhcchhhhhccccCCcchhhHH----------------------------HHhhhhhceEEccCCcEEE--E
Confidence            999996543211  0111111111111000                            0000111166999998776  4


Q ss_pred             ecCcCeEEEEecC-CCceeeeecccccCCCCCcCCCC--------Cce---eeeEEEecCCCCCCceEEEEeecCCcEEE
Q 021291          168 GEQLSEVEIWDLN-TAERCTRLHQNSCGGSPNFSSKG--------RGM---CMAVQAYLPSKSQGFVNVLAGYEDGSILV  235 (314)
Q Consensus       168 g~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~h~~~~--------~~~---~~~~~~~~p~~~~g~~~l~~g~~dg~i~v  235 (314)
                      -+. -+|++||+. ..+++.+++        -|....        ...   -..+. |+.++   . ++++|+....+++
T Consensus       290 RDy-ltvk~wD~nme~~pv~t~~--------vh~~lr~kLc~lYEnD~IfdKFec~-~sg~~---~-~v~TGsy~n~frv  355 (433)
T KOG1354|consen  290 RDY-LTVKLWDLNMEAKPVETYP--------VHEYLRSKLCSLYENDAIFDKFECS-WSGND---S-YVMTGSYNNVFRV  355 (433)
T ss_pred             ecc-ceeEEEeccccCCcceEEe--------ehHhHHHHHHHHhhccchhheeEEE-EcCCc---c-eEecccccceEEE
Confidence            443 689999994 555665555        232100        011   12333 77663   3 8999999999999


Q ss_pred             EEccC
Q 021291          236 WDIRN  240 (314)
Q Consensus       236 wd~~~  240 (314)
                      ++...
T Consensus       356 f~~~~  360 (433)
T KOG1354|consen  356 FNLAR  360 (433)
T ss_pred             ecCCC
Confidence            99654

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.69  E-value=2.1e-07  Score=69.83  Aligned_cols=73  Identities=19%  Similarity=0.321  Sum_probs=62.0

Q ss_pred             eeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeC-CCCeEEEecCCCcEEEEecCC
Q 021291          207 CMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDE-SCNGGISGGADQKIVLYNLDH  283 (314)
Q Consensus       207 ~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~i~iw~~~~  283 (314)
                      +.+++ -+|..   +.++++|+.||.+-+||.++...+...+++|..+|+.+-|+| ++..|++++.||.+-.||-.+
T Consensus       182 v~~l~-~hp~q---q~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  182 VTALC-SHPAQ---QHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             chhhh-CCccc---ccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            56665 77763   238999999999999999997778888999999999999976 456799999999999999774

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.64  E-value=8.3e-06  Score=75.27  Aligned_cols=243  Identities=12%  Similarity=0.079  Sum_probs=129.9

Q ss_pred             CCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEE------------------------EEeccC-------------
Q 021291           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVS------------------------SSWVHS-------------   60 (314)
Q Consensus        18 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~------------------------~~~~~~-------------   60 (314)
                      ...|.|++||||+..|+..+.+++|.+... +.+.+.                        .|+|..             
T Consensus       120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~  198 (928)
T PF04762_consen  120 DSGILAASWSPDEELLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTV  198 (928)
T ss_pred             cCcEEEEEECCCcCEEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCC
Confidence            578999999999999999999999988752 211111                        111110             


Q ss_pred             ---------CcccEEEEEEcccCCCCeEEEeec---C---CeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccc
Q 021291           61 ---------AAHGIVSVATGPSIGLNKVISQGR---D---GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN  125 (314)
Q Consensus        61 ---------~~~~v~~~~~~~~~~~~~l~s~~~---d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (314)
                               ..+.-..|+|-.  ||.+|++.+.   .   ..++||+-+ |.+..  ..+-...-.....+.+.+...+.
T Consensus       199 ~~~d~~~~s~dd~~~~ISWRG--DG~yFAVss~~~~~~~~R~iRVy~Re-G~L~s--tSE~v~gLe~~l~WrPsG~lIA~  273 (928)
T PF04762_consen  199 PKVDEGKLSWDDGRVRISWRG--DGEYFAVSSVEPETGSRRVIRVYSRE-GELQS--TSEPVDGLEGALSWRPSGNLIAS  273 (928)
T ss_pred             CccccCccccCCCceEEEECC--CCcEEEEEEEEcCCCceeEEEEECCC-ceEEe--ccccCCCccCCccCCCCCCEEEE
Confidence                     001345788888  9999997764   2   579999976 43211  00000000111122222222222


Q ss_pred             cccCCCCcceeeccCCceeee--cCCC--CCC----ceeccCCCceEEEeecCcCeEEEEecCCCc--eeeeecccccCC
Q 021291          126 AKQANEPKDCYEREVGETVDT--DSLC--DSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAE--RCTRLHQNSCGG  195 (314)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~----~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~--~~~~~~~~~~~~  195 (314)
                      .-.......+.-++.+.....  .++.  ...    +.|+++++-+.+ .- . ..|.+|-..+..  ..+.+..     
T Consensus       274 ~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv-~~-~-~~vqLWt~~NYHWYLKqei~~-----  345 (928)
T PF04762_consen  274 SQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAV-WL-E-DRVQLWTRSNYHWYLKQEIRF-----  345 (928)
T ss_pred             EEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEE-Ee-c-CCceEEEeeCCEEEEEEEEEc-----
Confidence            111112233333333222111  1221  111    999999975544 33 2 349999887654  2222221     


Q ss_pred             CCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEcc----CC-C------CceEeee---------------
Q 021291          196 SPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR----NP-G------IPLTAMK---------------  249 (314)
Q Consensus       196 ~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~----~~-~------~~~~~~~---------------  249 (314)
                          .  .......+. |+|..+ .  .|...+.+|.+..++..    .. +      ..+..+.               
T Consensus       346 ----~--~~~~~~~~~-Wdpe~p-~--~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VP  415 (928)
T PF04762_consen  346 ----S--SSESVNFVK-WDPEKP-L--RLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVP  415 (928)
T ss_pred             ----c--CCCCCCceE-ECCCCC-C--EEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCC
Confidence                0  011122255 998744 2  56666665666555432    10 0      0111111               


Q ss_pred             --------cCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCC
Q 021291          250 --------VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS  284 (314)
Q Consensus       250 --------~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~  284 (314)
                              ....+|.+++|++++..+++-..||.|.+|.....
T Consensus       416 PPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~  458 (928)
T PF04762_consen  416 PPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK  458 (928)
T ss_pred             chHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence                    12568999999998877888999999999986543

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.61  E-value=0.00012  Score=57.19  Aligned_cols=185  Identities=14%  Similarity=0.093  Sum_probs=110.4

Q ss_pred             CCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEee
Q 021291           38 TGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLS  117 (314)
Q Consensus        38 ~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  117 (314)
                      .+|+|..||..+|+.+.............+....   ++..+++++.++.|..||..+++...  .......... .   
T Consensus         1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~l~~~d~~tG~~~W--~~~~~~~~~~-~---   71 (238)
T PF13360_consen    1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVP---DGGRVYVASGDGNLYALDAKTGKVLW--RFDLPGPISG-A---   71 (238)
T ss_dssp             -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE---ETTEEEEEETTSEEEEEETTTSEEEE--EEECSSCGGS-G---
T ss_pred             CCCEEEEEECCCCCEEEEEECCCCCCCccceEEE---eCCEEEEEcCCCEEEEEECCCCCEEE--Eeeccccccc-e---
Confidence            3789999999999999888652211222322332   34778888899999999999997644  1121111000 0   


Q ss_pred             eeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCC
Q 021291          118 LVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSP  197 (314)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  197 (314)
                                                            ....+..+++.+  .++.++.+|..+++.+.....       
T Consensus        72 --------------------------------------~~~~~~~v~v~~--~~~~l~~~d~~tG~~~W~~~~-------  104 (238)
T PF13360_consen   72 --------------------------------------PVVDGGRVYVGT--SDGSLYALDAKTGKVLWSIYL-------  104 (238)
T ss_dssp             --------------------------------------EEEETTEEEEEE--TTSEEEEEETTTSCEEEEEEE-------
T ss_pred             --------------------------------------eeeccccccccc--ceeeeEecccCCcceeeeecc-------
Confidence                                                  011234444433  467999999999998887421       


Q ss_pred             CcCCCCC-ceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcc----------e-EEEEEeCCCC
Q 021291          198 NFSSKGR-GMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP----------V-LCLSIDESCN  265 (314)
Q Consensus       198 ~h~~~~~-~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~----------v-~~~~~~~~~~  265 (314)
                      ....... ....... +.     +. .++++..++.|..+|.++ ++.+.........          + ..+.+. ++ 
T Consensus       105 ~~~~~~~~~~~~~~~-~~-----~~-~~~~~~~~g~l~~~d~~t-G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-  174 (238)
T PF13360_consen  105 TSSPPAGVRSSSSPA-VD-----GD-RLYVGTSSGKLVALDPKT-GKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-  174 (238)
T ss_dssp             -SSCTCSTB--SEEE-EE-----TT-EEEEEETCSEEEEEETTT-TEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-
T ss_pred             ccccccccccccCce-Ee-----cC-EEEEEeccCcEEEEecCC-CcEEEEeecCCCCCCcceeeecccccceEEE-CC-
Confidence            1111111 1111222 33     22 688888899999999998 8887777653322          1 222223 44 


Q ss_pred             eEEEecCCCc-EEEEecCCCeeeEe
Q 021291          266 GGISGGADQK-IVLYNLDHSTYVLF  289 (314)
Q Consensus       266 ~l~s~s~dg~-i~iw~~~~~~~~~~  289 (314)
                      .+..++.++. +.+ |+.+++.++.
T Consensus       175 ~v~~~~~~g~~~~~-d~~tg~~~w~  198 (238)
T PF13360_consen  175 RVYVSSGDGRVVAV-DLATGEKLWS  198 (238)
T ss_dssp             EEEEECCTSSEEEE-ETTTTEEEEE
T ss_pred             EEEEEcCCCeEEEE-ECCCCCEEEE
Confidence            6666777775 555 9999997663

...

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.56  E-value=1.8e-05  Score=68.79  Aligned_cols=164  Identities=17%  Similarity=0.199  Sum_probs=100.5

Q ss_pred             ecCCCCceeEEEEcc-------------CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEccc---CCCC
Q 021291           14 LRGHRASVTDVCFHQ-------------TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS---IGLN   77 (314)
Q Consensus        14 l~~h~~~v~~~~~~~-------------~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~   77 (314)
                      |..|.+.|.-..+.-             +|.+++||+.||.|.|-.+.+.+....+..+   .++.+++++|.   ...+
T Consensus        54 ~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~---rpiksial~Pd~~~~~sk  130 (846)
T KOG2066|consen   54 LGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYDFK---RPIKSIALHPDFSRQQSK  130 (846)
T ss_pred             eccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEecC---CcceeEEeccchhhhhhh
Confidence            445666665555443             4999999999999999999988887776655   55999999992   1256


Q ss_pred             eEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceec
Q 021291           78 KVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVP  157 (314)
Q Consensus        78 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (314)
                      .+++|+.-| +.++.-+=.......+..-...+..                                          +.+
T Consensus       131 ~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~------------------------------------------~i~  167 (846)
T KOG2066|consen  131 QFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIH------------------------------------------SIK  167 (846)
T ss_pred             heeecCcce-EEEehhhhhcCccceeeecCccceE------------------------------------------EEE
Confidence            899999988 7776532111111000111111111                                          122


Q ss_pred             cCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCC-CCCceeeeEEEecCCCCCCceEEEEeecCCcEEEE
Q 021291          158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSS-KGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW  236 (314)
Q Consensus       158 ~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~-~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vw  236 (314)
                      ..|+ ++|- ++ |--|++||+.+++.+..++.+       +.. ........+. |.++   .  .++.|-.| +|+|.
T Consensus       168 W~g~-lIAW-an-d~Gv~vyd~~~~~~l~~i~~p-------~~~~R~e~fpphl~-W~~~---~--~LVIGW~d-~v~i~  230 (846)
T KOG2066|consen  168 WRGN-LIAW-AN-DDGVKVYDTPTRQRLTNIPPP-------SQSVRPELFPPHLH-WQDE---D--RLVIGWGD-SVKIC  230 (846)
T ss_pred             ecCc-EEEE-ec-CCCcEEEeccccceeeccCCC-------CCCCCcccCCCceE-ecCC---C--eEEEecCC-eEEEE
Confidence            3344 4443 33 344999999999888877753       211 1112233444 7765   2  57777655 78888


Q ss_pred             EccC
Q 021291          237 DIRN  240 (314)
Q Consensus       237 d~~~  240 (314)
                      .++.
T Consensus       231 ~I~~  234 (846)
T KOG2066|consen  231 SIKK  234 (846)
T ss_pred             EEec
Confidence            8873

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.54  E-value=3.7e-06  Score=72.07  Aligned_cols=200  Identities=11%  Similarity=0.073  Sum_probs=125.2

Q ss_pred             CCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCe---------------EEEEEeccCCcccEEEEEEcccCCCCeEEE
Q 021291           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR---------------TVSSSWVHSAAHGIVSVATGPSIGLNKVIS   81 (314)
Q Consensus        17 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~---------------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s   81 (314)
                      ......|++|+....++|.|+.||.++|..+.+..               .-+++.+|...  |.-+.|+.  +.+.|-+
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~s--V~vvTWNe--~~QKLTt   88 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNAS--VMVVTWNE--NNQKLTT   88 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcce--EEEEEecc--ccccccc
Confidence            34567899999988899999999999999887531               12456788854  99999999  7789999


Q ss_pred             eecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCC
Q 021291           82 QGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGP  161 (314)
Q Consensus        82 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (314)
                      ...+|-|.+|-+-.+....+  +.-....  ....+                                    ++|..+|.
T Consensus        89 SDt~GlIiVWmlykgsW~EE--MiNnRnK--SvV~S------------------------------------msWn~dG~  128 (1189)
T KOG2041|consen   89 SDTSGLIIVWMLYKGSWCEE--MINNRNK--SVVVS------------------------------------MSWNLDGT  128 (1189)
T ss_pred             cCCCceEEEEeeecccHHHH--HhhCcCc--cEEEE------------------------------------EEEcCCCc
Confidence            99999999999887765331  1111111  11111                                    45777777


Q ss_pred             ceEEEeecCcCeEEEEecCCCceee-eecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccC
Q 021291          162 KYMAVAGEQLSEVEIWDLNTAERCT-RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (314)
Q Consensus       162 ~~~~~~g~~d~~i~vwd~~~~~~~~-~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~  240 (314)
                      .+.++  ..||.|.+=.+...+... .++        +      .....+. |++|   .+ .++.+-.+|.+.++|..-
T Consensus       129 kIcIv--YeDGavIVGsvdGNRIwgKeLk--------g------~~l~hv~-ws~D---~~-~~Lf~~ange~hlydnqg  187 (1189)
T KOG2041|consen  129 KICIV--YEDGAVIVGSVDGNRIWGKELK--------G------QLLAHVL-WSED---LE-QALFKKANGETHLYDNQG  187 (1189)
T ss_pred             EEEEE--EccCCEEEEeeccceecchhcc--------h------hecccee-eccc---HH-HHHhhhcCCcEEEecccc
Confidence            66542  335666555544322111 111        1      1222344 9998   33 677778889999999762


Q ss_pred             CC------CceEe----eecCCcceEEEEE--------eCCCCeEEEecCCCcEEEEec
Q 021291          241 PG------IPLTA----MKVHLEPVLCLSI--------DESCNGGISGGADQKIVLYNL  281 (314)
Q Consensus       241 ~~------~~~~~----~~~h~~~v~~~~~--------~~~~~~l~s~s~dg~i~iw~~  281 (314)
                      .-      .+.-.    +......|-.+.|        -|+...|+.+-..|.+.|-.-
T Consensus       188 nF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~  246 (1189)
T KOG2041|consen  188 NFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRS  246 (1189)
T ss_pred             cHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhh
Confidence            10      11111    1111223556666        357777888888888777543

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.48  E-value=1.1e-06  Score=73.69  Aligned_cols=76  Identities=16%  Similarity=0.202  Sum_probs=63.2

Q ss_pred             CCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCC
Q 021291           16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN   95 (314)
Q Consensus        16 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~   95 (314)
                      .....|.|++++|+...|+.|+.||.|.+||...+.....  ...  -....++|+|  +|..|++|+..|.+.+||+.-
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--ka~--~~P~~iaWHp--~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--KAE--FIPTLIAWHP--DGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee--eec--ccceEEEEcC--CCcEEEEEcCCceEEEEEeec
Confidence            4678899999999999999999999999999876533322  222  2378999999  999999999999999999975


Q ss_pred             CC
Q 021291           96 GG   97 (314)
Q Consensus        96 ~~   97 (314)
                      ..
T Consensus       331 sp  332 (545)
T PF11768_consen  331 SP  332 (545)
T ss_pred             Cc
Confidence            53

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.48  E-value=4.2e-05  Score=64.68  Aligned_cols=226  Identities=12%  Similarity=0.067  Sum_probs=119.5

Q ss_pred             CCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEE-EEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeec
Q 021291           30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVS-VATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKT  108 (314)
Q Consensus        30 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~  108 (314)
                      +..++.++.+|.+..+|.++|+.+.+.+...   .+.+ ...    .+..++.+..++.|.-+|.++++..++  .....
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~---~~~ssP~v----~~~~v~v~~~~g~l~ald~~tG~~~W~--~~~~~  190 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAG---EALSRPVV----SDGLVLVHTSNGMLQALNESDGAVKWT--VNLDV  190 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCC---ceecCCEE----ECCEEEEECCCCEEEEEEccCCCEeee--ecCCC
Confidence            4467778889999999999999888776442   1222 112    235677778899999999999987652  11111


Q ss_pred             ceeeEE-Eeeeeec-cccccccCCCCcceeeccCCceeee-cCCC----CC-----Cceecc--CCCceEEEeecCcCeE
Q 021291          109 NSYHFC-KLSLVKE-PYANAKQANEPKDCYEREVGETVDT-DSLC----DS-----KDDVPA--EGPKYMAVAGEQLSEV  174 (314)
Q Consensus       109 ~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~-----~~~~~~--~~~~~~~~~g~~d~~i  174 (314)
                      ...... ..++... .........+....++...++..-. ....    ..     .+.-+|  .+..+++  ++.++.+
T Consensus       191 ~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~--~~~~g~l  268 (394)
T PRK11138        191 PSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYA--LAYNGNL  268 (394)
T ss_pred             CcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEE--EEcCCeE
Confidence            000000 0000000 0000111111122222222221110 0000    00     011111  2344443  3347999


Q ss_pred             EEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCC-c
Q 021291          175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL-E  253 (314)
Q Consensus       175 ~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~-~  253 (314)
                      ..+|+.+++.+-....       +.       ...+. ..     +. .++.++.+|.+..+|..+ ++.+-....-. .
T Consensus       269 ~ald~~tG~~~W~~~~-------~~-------~~~~~-~~-----~~-~vy~~~~~g~l~ald~~t-G~~~W~~~~~~~~  326 (394)
T PRK11138        269 VALDLRSGQIVWKREY-------GS-------VNDFA-VD-----GG-RIYLVDQNDRVYALDTRG-GVELWSQSDLLHR  326 (394)
T ss_pred             EEEECCCCCEEEeecC-------CC-------ccCcE-EE-----CC-EEEEEcCCCeEEEEECCC-CcEEEcccccCCC
Confidence            9999999987655431       10       01111 22     22 677788899999999987 65543322111 1


Q ss_pred             ceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEee
Q 021291          254 PVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFG  290 (314)
Q Consensus       254 ~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~  290 (314)
                      ...+....  +.+|+.++.||.|++.|..+++.++..
T Consensus       327 ~~~sp~v~--~g~l~v~~~~G~l~~ld~~tG~~~~~~  361 (394)
T PRK11138        327 LLTAPVLY--NGYLVVGDSEGYLHWINREDGRFVAQQ  361 (394)
T ss_pred             cccCCEEE--CCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence            12222222  236788889999999999999887753

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.47  E-value=0.00036  Score=55.17  Aligned_cols=219  Identities=9%  Similarity=0.057  Sum_probs=125.6

Q ss_pred             eEEEEcc-CCCEEEEecCCCe-EEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeec-----CCeEEEEeCC
Q 021291           22 TDVCFHQ-TKPILFAGTTGGE-LRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-----DGTVKCWDIE   94 (314)
Q Consensus        22 ~~~~~~~-~~~~l~s~~~dg~-v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-----dg~v~iwd~~   94 (314)
                      ..++.+| .+..++.+-.-|+ ..+||..+++.+..+....+...--.-.|++  ||++|++.-.     .|.|-|||..
T Consensus         8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~--dG~~LytTEnd~~~g~G~IgVyd~~   85 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP--DGRLLYTTENDYETGRGVIGVYDAA   85 (305)
T ss_pred             cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC--CCCEEEEeccccCCCcEEEEEEECc
Confidence            4577788 5666777777664 6689999999888776544321223467999  9999998644     5789999998


Q ss_pred             CCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeec-----
Q 021291           95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE-----  169 (314)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----  169 (314)
                      .+ ..+  +-++.......-.                                      +.+.|+|+.++++.|+     
T Consensus        86 ~~-~~r--i~E~~s~GIGPHe--------------------------------------l~l~pDG~tLvVANGGI~Thp  124 (305)
T PF07433_consen   86 RG-YRR--IGEFPSHGIGPHE--------------------------------------LLLMPDGETLVVANGGIETHP  124 (305)
T ss_pred             CC-cEE--EeEecCCCcChhh--------------------------------------EEEcCCCCEEEEEcCCCccCc
Confidence            32 211  1122222111000                                      3355666555544332     


Q ss_pred             -----------CcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCC-------
Q 021291          170 -----------QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG-------  231 (314)
Q Consensus       170 -----------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg-------  231 (314)
                                 .+..+.+.|..+++.+.+...+.        ....-.+.-++ +.++   |. .++..-..|       
T Consensus       125 d~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~--------~~~~lSiRHLa-~~~~---G~-V~~a~Q~qg~~~~~~P  191 (305)
T PF07433_consen  125 DSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP--------DLHQLSIRHLA-VDGD---GT-VAFAMQYQGDPGDAPP  191 (305)
T ss_pred             ccCceecChhhcCCceEEEecCCCceeeeeecCc--------cccccceeeEE-ecCC---Cc-EEEEEecCCCCCccCC
Confidence                       24456667777777766543210        00122444554 6655   43 222222222       


Q ss_pred             cEEEEEccCCCCceEee-------ecCCcceEEEEEeCCCCeEEEec-CCCcEEEEecCCCeeeEe-----eeeeeecCC
Q 021291          232 SILVWDIRNPGIPLTAM-------KVHLEPVLCLSIDESCNGGISGG-ADQKIVLYNLDHSTYVLF-----GIGFVCDQE  298 (314)
Q Consensus       232 ~i~vwd~~~~~~~~~~~-------~~h~~~v~~~~~~~~~~~l~s~s-~dg~i~iw~~~~~~~~~~-----~~~~~~~~~  298 (314)
                      .|.+++..   ..+..+       ..-...|-+|++++++.+++..| .-+.+.+||..+++.+..     ..+++..++
T Consensus       192 Lva~~~~g---~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D~cGva~~~~  268 (305)
T PF07433_consen  192 LVALHRRG---GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPDACGVAPTDD  268 (305)
T ss_pred             eEEEEcCC---CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCceeeeeecCC
Confidence            12233222   222222       23356789999999998775554 567899999999987764     455555555


Q ss_pred             C
Q 021291          299 G  299 (314)
Q Consensus       299 ~  299 (314)
                      +
T Consensus       269 ~  269 (305)
T PF07433_consen  269 G  269 (305)
T ss_pred             c
Confidence            5

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.46  E-value=4.9e-06  Score=73.15  Aligned_cols=154  Identities=20%  Similarity=0.221  Sum_probs=103.9

Q ss_pred             ceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeec---------CCeEEE
Q 021291           20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR---------DGTVKC   90 (314)
Q Consensus        20 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---------dg~v~i   90 (314)
                      .|+-++.  +++++++|...|+|.+-|.++.+.+.++..|.+.  |..+..    .|+.|++|+.         |..|+|
T Consensus       179 ~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~s--iSDfDv----~GNlLitCG~S~R~~~l~~D~FvkV  250 (1118)
T KOG1275|consen  179 GVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGS--ISDFDV----QGNLLITCGYSMRRYNLAMDPFVKV  250 (1118)
T ss_pred             ceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccc--eeeeec----cCCeEEEeecccccccccccchhhh
Confidence            3444444  5789999999999999999999999999999955  887776    4589999876         567899


Q ss_pred             EeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecC
Q 021291           91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ  170 (314)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  170 (314)
                      ||++..+.+.  .+.+...+. .                                        +.|.|.-...++++.+ 
T Consensus       251 YDLRmmral~--PI~~~~~P~-f----------------------------------------lrf~Psl~t~~~V~S~-  286 (1118)
T KOG1275|consen  251 YDLRMMRALS--PIQFPYGPQ-F----------------------------------------LRFHPSLTTRLAVTSQ-  286 (1118)
T ss_pred             hhhhhhhccC--CcccccCch-h----------------------------------------hhhcccccceEEEEec-
Confidence            9999876543  112211110 0                                        3455654444554443 


Q ss_pred             cCeEEEEecCCCc-eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEcc
Q 021291          171 LSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR  239 (314)
Q Consensus       171 d~~i~vwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~  239 (314)
                      .|...+-|..+.. +.....         +..+....+.+.. ++++   |+ .++.|..+|.|.+|.-+
T Consensus       287 sGq~q~vd~~~lsNP~~~~~---------~v~p~~s~i~~fD-iSsn---~~-alafgd~~g~v~~wa~~  342 (1118)
T KOG1275|consen  287 SGQFQFVDTATLSNPPAGVK---------MVNPNGSGISAFD-ISSN---GD-ALAFGDHEGHVNLWADR  342 (1118)
T ss_pred             ccceeeccccccCCCcccee---------EEccCCCcceeEE-ecCC---Cc-eEEEecccCcEeeecCC
Confidence            4889999843221 111111         1112344577777 8887   55 89999999999999843

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.43  E-value=7.1e-05  Score=65.74  Aligned_cols=211  Identities=14%  Similarity=0.191  Sum_probs=118.7

Q ss_pred             EEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCe-----EEEEeCCCCCCC
Q 021291           25 CFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT-----VKCWDIENGGLS   99 (314)
Q Consensus        25 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~-----v~iwd~~~~~~~   99 (314)
                      +|++.+..++.|+.+|.|.+.+ ..-+.+..++.+... -|..+....  +..+|++.+.|+.     |+|||++..+--
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~s-iv~~L~~~~--~~~~L~sv~Ed~~~np~llkiw~lek~~~n  105 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQS-IVQFLYILN--KQNFLFSVGEDEQGNPVLLKIWDLEKVDKN  105 (933)
T ss_pred             EEcCCCceEEEeeccccEEEec-ccceeeehheecchh-hhhHhhccc--CceEEEEEeecCCCCceEEEEecccccCCC
Confidence            3567788999999999988887 334555788887743 233443333  4468888777654     999999764311


Q ss_pred             CCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEec
Q 021291          100 SNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDL  179 (314)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~  179 (314)
                      ..|... ..+     .+.....+.....                       ...++++.+-+  .+++|-.+|.|..+.=
T Consensus       106 ~sP~c~-~~~-----ri~~~~np~~~~p-----------------------~s~l~Vs~~l~--~Iv~Gf~nG~V~~~~G  154 (933)
T KOG2114|consen  106 NSPQCL-YEH-----RIFTIKNPTNPSP-----------------------ASSLAVSEDLK--TIVCGFTNGLVICYKG  154 (933)
T ss_pred             CCccee-eee-----eeeccCCCCCCCc-----------------------ceEEEEEcccc--EEEEEecCcEEEEEcC
Confidence            101110 000     0000000000000                       00044555533  3347888999988842


Q ss_pred             C---CCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceE
Q 021291          180 N---TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVL  256 (314)
Q Consensus       180 ~---~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~  256 (314)
                      .   .......+         .|  ....+++.+. |..+   +...+.++. -..|.+|.+......+..+..|...++
T Consensus       155 Di~RDrgsr~~~---------~~--~~~~pITgL~-~~~d---~~s~lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~~ln  218 (933)
T KOG2114|consen  155 DILRDRGSRQDY---------SH--RGKEPITGLA-LRSD---GKSVLFVAT-TEQVMLYSLSGRTPSLKVLDNNGISLN  218 (933)
T ss_pred             cchhccccceee---------ec--cCCCCceeeE-EecC---CceeEEEEe-cceeEEEEecCCCcceeeeccCCccce
Confidence            1   11111111         12  2366888887 8776   432333333 347999999852322455788888999


Q ss_pred             EEEEeCCCCeEEEecCCCcEEEEecCCCeee
Q 021291          257 CLSIDESCNGGISGGADQKIVLYNLDHSTYV  287 (314)
Q Consensus       257 ~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~  287 (314)
                      |..+++....++.++. ..+.+|+.+..+.-
T Consensus       219 Css~~~~t~qfIca~~-e~l~fY~sd~~~~c  248 (933)
T KOG2114|consen  219 CSSFSDGTYQFICAGS-EFLYFYDSDGRGPC  248 (933)
T ss_pred             eeecCCCCccEEEecC-ceEEEEcCCCccee
Confidence            9999765554555543 35889988755443

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.43  E-value=0.00016  Score=66.07  Aligned_cols=241  Identities=11%  Similarity=0.054  Sum_probs=127.9

Q ss_pred             CceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCC
Q 021291           19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL   98 (314)
Q Consensus        19 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~   98 (314)
                      +.|.++.|..+.+.++.+..+|.|.+-|.++...... ..-.  .+|.+++|+|  |.+.++..+..++|.+-+-. -..
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eiv-g~vd--~GI~aaswS~--Dee~l~liT~~~tll~mT~~-f~~  142 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIV-GNVD--NGISAASWSP--DEELLALITGRQTLLFMTKD-FEP  142 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceeee-eecc--CceEEEeecC--CCcEEEEEeCCcEEEEEecc-ccc
Confidence            5899999999998999999999999998776543222 1122  5599999999  99999988888887664431 111


Q ss_pred             CCCCeeeeecceeeEEEeeeeeccccccccCCCCcce--e-eccCCceee-ecCCCCCC-ceeccCCCceEEE--eecCc
Q 021291           99 SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDC--Y-EREVGETVD-TDSLCDSK-DDVPAEGPKYMAV--AGEQL  171 (314)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~--~g~~d  171 (314)
                      +.+  ..+.........+--.+......-..+..++.  - .+...+... .....|.. ++|--||+++.+.  ....+
T Consensus       143 i~E--~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~  220 (1265)
T KOG1920|consen  143 IAE--KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETG  220 (1265)
T ss_pred             hhc--cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCC
Confidence            110  01100000000000000000000000000000  0 000000000 01111222 8899999865441  11123


Q ss_pred             -CeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEe---ecCCcEEEEEccCC--CCce
Q 021291          172 -SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG---YEDGSILVWDIRNP--GIPL  245 (314)
Q Consensus       172 -~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g---~~dg~i~vwd~~~~--~~~~  245 (314)
                       +.|++||.. +..- ...           .+..+.-.++. |-|.   |. .+++-   ..|+.|.+|.-+-.  +...
T Consensus       221 ~RkirV~drE-g~Ln-s~s-----------e~~~~l~~~Ls-WkPs---gs-~iA~iq~~~sd~~IvffErNGL~hg~f~  282 (1265)
T KOG1920|consen  221 TRKIRVYDRE-GALN-STS-----------EPVEGLQHSLS-WKPS---GS-LIAAIQCKTSDSDIVFFERNGLRHGEFV  282 (1265)
T ss_pred             ceeEEEeccc-chhh-ccc-----------Cccccccccee-ecCC---CC-eEeeeeecCCCCcEEEEecCCccccccc
Confidence             789999976 4321 111           11234445565 9997   44 56553   34567888875421  2222


Q ss_pred             EeeecCCcceEEEEEeCCCCeEEE---ecCCCcEEEEecCCCe
Q 021291          246 TAMKVHLEPVLCLSIDESCNGGIS---GGADQKIVLYNLDHST  285 (314)
Q Consensus       246 ~~~~~h~~~v~~~~~~~~~~~l~s---~s~dg~i~iw~~~~~~  285 (314)
                      ..+.....+|..++|+.++..|+.   ......|++|-+.+-.
T Consensus       283 l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  283 LPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             cCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence            223333445999999988888876   4444459999887654

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.42  E-value=0.00016  Score=55.56  Aligned_cols=74  Identities=8%  Similarity=0.090  Sum_probs=50.6

Q ss_pred             eeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccC-----CcccEEEEEEcccCC----CCeEEEeecCCeEEEE
Q 021291           21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS-----AAHGIVSVATGPSIG----LNKVISQGRDGTVKCW   91 (314)
Q Consensus        21 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~----~~~l~s~~~dg~v~iw   91 (314)
                      =+-++||||+.+||.+...|+|++||+.. ..+..+....     -...|..|.|.+...    ...|+.-..+|.++-|
T Consensus        46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy  124 (282)
T PF15492_consen   46 WRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY  124 (282)
T ss_pred             heEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence            35699999999999999999999999875 3333433211     113477787765211    1257777778888877


Q ss_pred             eCCC
Q 021291           92 DIEN   95 (314)
Q Consensus        92 d~~~   95 (314)
                      -+..
T Consensus       125 ~vs~  128 (282)
T PF15492_consen  125 LVSV  128 (282)
T ss_pred             EEEc
Confidence            7643

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=1.2e-05  Score=65.21  Aligned_cols=226  Identities=14%  Similarity=0.065  Sum_probs=137.6

Q ss_pred             CceEEecCCCCceeEEEEccCCCEEEEecC-CCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCC-eEE-EeecC
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTT-GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLN-KVI-SQGRD   85 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~-s~~~d   85 (314)
                      +.++.++.|...|.+++.+-++.++.|++. |..++++|+++-..+..++...-+..+ +.-.++. +.. .++ +.-.+
T Consensus        44 EfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a-~wv~skG-d~~s~IAVs~~~s  121 (558)
T KOG0882|consen   44 EFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFA-EWVTSKG-DKISLIAVSLFKS  121 (558)
T ss_pred             eehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCce-EEecCCC-CeeeeEEeecccC
Confidence            456777889999999999999999999777 999999999886665444433222212 2222331 111 233 34457


Q ss_pred             CeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEE
Q 021291           86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA  165 (314)
Q Consensus        86 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (314)
                      +.+.++|-....+..-....++..+....                                        .+.+.++..+ 
T Consensus       122 g~i~VvD~~~d~~q~~~fkklH~sPV~~i----------------------------------------~y~qa~Ds~v-  160 (558)
T KOG0882|consen  122 GKIFVVDGFGDFCQDGYFKKLHFSPVKKI----------------------------------------RYNQAGDSAV-  160 (558)
T ss_pred             CCcEEECCcCCcCccceecccccCceEEE----------------------------------------Eeecccccee-
Confidence            89999998766543211112222222222                                        2444455333 


Q ss_pred             EeecCcCeEEEEecCC-Cc-----eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEcc
Q 021291          166 VAGEQLSEVEIWDLNT-AE-----RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR  239 (314)
Q Consensus       166 ~~g~~d~~i~vwd~~~-~~-----~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~  239 (314)
                       +....|.|.-|.... .+     ....++.  .....+. ........++. |+|+   |. .+.+-+.|..|++++.+
T Consensus       161 -SiD~~gmVEyWs~e~~~qfPr~~l~~~~K~--eTdLy~f-~K~Kt~pts~E-fsp~---g~-qistl~~DrkVR~F~~K  231 (558)
T KOG0882|consen  161 -SIDISGMVEYWSAEGPFQFPRTNLNFELKH--ETDLYGF-PKAKTEPTSFE-FSPD---GA-QISTLNPDRKVRGFVFK  231 (558)
T ss_pred             -eccccceeEeecCCCcccCccccccccccc--cchhhcc-cccccCccceE-Eccc---cC-cccccCcccEEEEEEec
Confidence             555568889998762 11     1111110  0000011 11344566776 9998   44 78888899999999998


Q ss_pred             CCCCceEee--------------------------------ecCCc-ceEEEEEeCCCCeEEEecCCCcEEEEecCCCee
Q 021291          240 NPGIPLTAM--------------------------------KVHLE-PVLCLSIDESCNGGISGGADQKIVLYNLDHSTY  286 (314)
Q Consensus       240 ~~~~~~~~~--------------------------------~~h~~-~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~  286 (314)
                      + +..++.+                                ..|.. .-+.+.|+..+++|+-|+.=| |++.++.+++.
T Consensus       232 t-GklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v  309 (558)
T KOG0882|consen  232 T-GKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTV  309 (558)
T ss_pred             c-chhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeE
Confidence            7 5543332                                12222 345678899999999888776 89999998876


Q ss_pred             eE
Q 021291          287 VL  288 (314)
Q Consensus       287 ~~  288 (314)
                      +.
T Consensus       310 ~r  311 (558)
T KOG0882|consen  310 VR  311 (558)
T ss_pred             EE
Confidence            54

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.37  E-value=0.00058  Score=54.05  Aligned_cols=56  Identities=16%  Similarity=0.234  Sum_probs=43.0

Q ss_pred             EEEccCCCEEEEe-----cCCCeEEEEeCC-CCeEEEEEeccCCcccEEEEEEcccCCCCeEEEee
Q 021291           24 VCFHQTKPILFAG-----TTGGELRIWDTV-QHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG   83 (314)
Q Consensus        24 ~~~~~~~~~l~s~-----~~dg~v~iwd~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (314)
                      -.|++||++|++.     +..|.|-|||.. +-+.+..+..+.  -.-..+.+.|  |++.|+.+-
T Consensus        56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~G--IGPHel~l~p--DG~tLvVAN  117 (305)
T PF07433_consen   56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHG--IGPHELLLMP--DGETLVVAN  117 (305)
T ss_pred             EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCC--cChhhEEEcC--CCCEEEEEc
Confidence            5799999999885     446899999998 567777777765  2357788999  887777653

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.35  E-value=2e-07  Score=78.47  Aligned_cols=204  Identities=18%  Similarity=0.196  Sum_probs=118.3

Q ss_pred             CCceeEEEEccC--CCEEEEecCCCeEEEEeCCCCeEE--EEEeccCCcccEEEEEEcccCCCCeEEEeec----CCeEE
Q 021291           18 RASVTDVCFHQT--KPILFAGTTGGELRIWDTVQHRTV--SSSWVHSAAHGIVSVATGPSIGLNKVISQGR----DGTVK   89 (314)
Q Consensus        18 ~~~v~~~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~----dg~v~   89 (314)
                      ...+.|+++.-+  ..+++.|..+|.|.+-..+...--  ....++.  .+.++++|++- |.+.|+.|-.    |-.+.
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~a--r~Ct~lAwneL-Dtn~LAagldkhrnds~~~  132 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYA--RPCTSLAWNEL-DTNHLAAGLDKHRNDSSLK  132 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceeccccc--ccccccccccc-cHHHHHhhhhhhcccCCcc
Confidence            345778887663  347889999999999887653222  2233344  55999999985 5567777643    56799


Q ss_pred             EEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeec
Q 021291           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE  169 (314)
Q Consensus        90 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  169 (314)
                      |||+.++-...+....+...                                     .+.+...++|..+.+ +++ +|.
T Consensus       133 Iwdi~s~ltvPke~~~fs~~-------------------------------------~l~gqns~cwlrd~k-lvl-aGm  173 (783)
T KOG1008|consen  133 IWDINSLLTVPKESPLFSSS-------------------------------------TLDGQNSVCWLRDTK-LVL-AGM  173 (783)
T ss_pred             ceecccccCCCccccccccc-------------------------------------cccCccccccccCcc-hhh-ccc
Confidence            99998863211000001000                                     000111145664443 333 677


Q ss_pred             CcCeEEEEecCCCc-eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEE-ccCCCCceEe
Q 021291          170 QLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD-IRNPGIPLTA  247 (314)
Q Consensus       170 ~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd-~~~~~~~~~~  247 (314)
                      ..+.+.++|++... ....+..      ..|    .+..  +..|+|+      ++++-. ||.|.+|| .++...++..
T Consensus       174 ~sr~~~ifdlRqs~~~~~svnT------k~v----qG~t--Vdp~~~n------Y~cs~~-dg~iAiwD~~rnienpl~~  234 (783)
T KOG1008|consen  174 TSRSVHIFDLRQSLDSVSSVNT------KYV----QGIT--VDPFSPN------YFCSNS-DGDIAIWDTYRNIENPLQI  234 (783)
T ss_pred             ccchhhhhhhhhhhhhhhhhhh------hhc----ccce--ecCCCCC------ceeccc-cCceeeccchhhhccHHHH
Confidence            67899999998432 2222210      011    2221  1135554      666655 99999999 5554566655


Q ss_pred             eecCCc----ceEEEEEeCCCC-eEEEec-CCCcEEEEecC
Q 021291          248 MKVHLE----PVLCLSIDESCN-GGISGG-ADQKIVLYNLD  282 (314)
Q Consensus       248 ~~~h~~----~v~~~~~~~~~~-~l~s~s-~dg~i~iw~~~  282 (314)
                      +.....    .+..++|.|... .+++.+ ..++|+++++.
T Consensus       235 i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  235 ILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             HhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            543333    389999976432 244444 45789999875

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.35  E-value=6.5e-06  Score=71.39  Aligned_cols=152  Identities=13%  Similarity=0.078  Sum_probs=106.7

Q ss_pred             ccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCc
Q 021291           63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE  142 (314)
Q Consensus        63 ~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (314)
                      ..+.|++++.    ++|+-|..+|.|++.+...... .    .+...+                                
T Consensus        40 D~is~~av~~----~~~~~GtH~g~v~~~~~~~~~~-~----~~~~s~--------------------------------   78 (846)
T KOG2066|consen   40 DAISCCAVHD----KFFALGTHRGAVYLTTCQGNPK-T----NFDHSS--------------------------------   78 (846)
T ss_pred             hHHHHHHhhc----ceeeeccccceEEEEecCCccc-c----cccccc--------------------------------
Confidence            3477888865    8999999999999999875421 0    000000                                


Q ss_pred             eeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCC--CCCC
Q 021291          143 TVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPS--KSQG  220 (314)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~--~~~g  220 (314)
                                   -..+|+++.  +++.||+|.|-.+-+.+...++..             ..++-+++ ++|+  ....
T Consensus        79 -------------~~~~Gey~a--sCS~DGkv~I~sl~~~~~~~~~df-------------~rpiksia-l~Pd~~~~~s  129 (846)
T KOG2066|consen   79 -------------SILEGEYVA--SCSDDGKVVIGSLFTDDEITQYDF-------------KRPIKSIA-LHPDFSRQQS  129 (846)
T ss_pred             -------------cccCCceEE--EecCCCcEEEeeccCCccceeEec-------------CCcceeEE-eccchhhhhh
Confidence                         013456543  788899999999988887766652             33677776 9997  2222


Q ss_pred             ceEEEEeecCCcEEEEEccCCCCceE-eeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291          221 FVNVLAGYEDGSILVWDIRNPGIPLT-AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF  289 (314)
Q Consensus       221 ~~~l~~g~~dg~i~vwd~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~  289 (314)
                      + .+++|+..| +.++.-+-.+.... .+..-.++|.++.|..+  ++|=++.+| |+|||+.+++.+..
T Consensus       130 k-~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~--lIAWand~G-v~vyd~~~~~~l~~  194 (846)
T KOG2066|consen  130 K-QFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGN--LIAWANDDG-VKVYDTPTRQRLTN  194 (846)
T ss_pred             h-heeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCc--EEEEecCCC-cEEEeccccceeec
Confidence            3 689999988 88877553333222 35555789999999877  888888777 99999999987764

>smart00320 WD40 WD40 repeats

Probab=98.34  E-value=1.6e-06  Score=45.97  Aligned_cols=39  Identities=28%  Similarity=0.627  Sum_probs=35.6

Q ss_pred             CCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEe
Q 021291            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWD   46 (314)
Q Consensus         8 ~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd   46 (314)
                      .+++..+.+|...|.+++|++++.++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            356788889999999999999889999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.31  E-value=0.00038  Score=58.94  Aligned_cols=199  Identities=12%  Similarity=0.096  Sum_probs=107.6

Q ss_pred             CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEE-----EEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCe
Q 021291           29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIV-----SVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPS  103 (314)
Q Consensus        29 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~-----~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~  103 (314)
                      .+..+++++.+|.|.-+|.++|+.+.............     .+.-.|..++..++.++.+|.|..+|.++++..++  
T Consensus        68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~--  145 (394)
T PRK11138         68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQ--  145 (394)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccc--
Confidence            45678888899999999999999887765432100000     00111111346777888899999999999988662  


Q ss_pred             eeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCc
Q 021291          104 LTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAE  183 (314)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~  183 (314)
                      ......  ...  ++                                    .+ . +..+++  +..++.+.-+|.++++
T Consensus       146 ~~~~~~--~~s--sP------------------------------------~v-~-~~~v~v--~~~~g~l~ald~~tG~  181 (394)
T PRK11138        146 TKVAGE--ALS--RP------------------------------------VV-S-DGLVLV--HTSNGMLQALNESDGA  181 (394)
T ss_pred             ccCCCc--eec--CC------------------------------------EE-E-CCEEEE--ECCCCEEEEEEccCCC
Confidence            111110  000  00                                    01 1 233443  4447899999999999


Q ss_pred             eeeeecccccCCCCCcCC-CCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCc----c---e
Q 021291          184 RCTRLHQNSCGGSPNFSS-KGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE----P---V  255 (314)
Q Consensus       184 ~~~~~~~~~~~~~~~h~~-~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~----~---v  255 (314)
                      .+-.+...       ... ...+.. +.. ...    +  .++.+..+|.+..+|..+ ++.+........    .   .
T Consensus       182 ~~W~~~~~-------~~~~~~~~~~-sP~-v~~----~--~v~~~~~~g~v~a~d~~~-G~~~W~~~~~~~~~~~~~~~~  245 (394)
T PRK11138        182 VKWTVNLD-------VPSLTLRGES-APA-TAF----G--GAIVGGDNGRVSAVLMEQ-GQLIWQQRISQPTGATEIDRL  245 (394)
T ss_pred             EeeeecCC-------CCcccccCCC-CCE-EEC----C--EEEEEcCCCEEEEEEccC-ChhhheeccccCCCccchhcc
Confidence            88776521       000 000000 000 111    2  466677788888888877 554433221000    0   0


Q ss_pred             EEEEEeC--CCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291          256 LCLSIDE--SCNGGISGGADQKIVLYNLDHSTYVLF  289 (314)
Q Consensus       256 ~~~~~~~--~~~~l~s~s~dg~i~iw~~~~~~~~~~  289 (314)
                      ..+.-+|  .+..++.++.+|.+..+|..+++.++.
T Consensus       246 ~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~  281 (394)
T PRK11138        246 VDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWK  281 (394)
T ss_pred             cccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEe
Confidence            0000011  122455555677777777777766654

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.30  E-value=2.7e-05  Score=67.57  Aligned_cols=167  Identities=11%  Similarity=0.135  Sum_probs=114.4

Q ss_pred             EEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCcee
Q 021291           65 IVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETV  144 (314)
Q Consensus        65 v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (314)
                      -.++.|+|  . .+|+-|+. ..|.+-|..+-+.++  .++.+........+.+...+..                    
T Consensus        18 ~~A~Dw~~--~-GLiAygsh-slV~VVDs~s~q~iq--sie~h~s~V~~VrWap~~~p~~--------------------   71 (1062)
T KOG1912|consen   18 RNAADWSP--S-GLIAYGSH-SLVSVVDSRSLQLIQ--SIELHQSAVTSVRWAPAPSPRD--------------------   71 (1062)
T ss_pred             ccccccCc--c-ceEEEecC-ceEEEEehhhhhhhh--ccccCccceeEEEeccCCCchh--------------------
Confidence            56788998  4 67777775 478999998887766  4455554445454444433221                    


Q ss_pred             eecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEE
Q 021291          145 DTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNV  224 (314)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l  224 (314)
                                -++|....++++++...|.|.+||...+..+..+.        .|.+    .+..++ |-|...+.+.++
T Consensus        72 ----------llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~--------~~~~----~~qdl~-W~~~rd~Srd~L  128 (1062)
T KOG1912|consen   72 ----------LLSPSSSQLLIASADISGRIILVDFVLASVINWLS--------HSND----SVQDLC-WVPARDDSRDVL  128 (1062)
T ss_pred             ----------ccCccccceeEEeccccCcEEEEEehhhhhhhhhc--------CCCc----chhhee-eeeccCcchhee
Confidence                      25555455667788889999999999888777776        3433    344554 766554454477


Q ss_pred             EEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeC-CCCeEEEecCCCcEEEEec
Q 021291          225 LAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDE-SCNGGISGGADQKIVLYNL  281 (314)
Q Consensus       225 ~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~i~iw~~  281 (314)
                      ++-.....|.+|+..+ |+.+...........++.++| +.+.+..-+..|.+.+-+.
T Consensus       129 laIh~ss~lvLwntdt-G~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~  185 (1062)
T KOG1912|consen  129 LAIHGSSTLVLWNTDT-GEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKD  185 (1062)
T ss_pred             EEecCCcEEEEEEccC-CceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEec
Confidence            7777788999999998 777777776666777788877 4445555566777776654

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.30  E-value=0.00094  Score=52.55  Aligned_cols=182  Identities=14%  Similarity=0.152  Sum_probs=106.4

Q ss_pred             eeEEEEc-cCCCEEEEecCCCeEEEEeCCCCeEEEEEec--cC-CcccEEEEEEcccCCCCeEEEeecC--------CeE
Q 021291           21 VTDVCFH-QTKPILFAGTTGGELRIWDTVQHRTVSSSWV--HS-AAHGIVSVATGPSIGLNKVISQGRD--------GTV   88 (314)
Q Consensus        21 v~~~~~~-~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--~~-~~~~v~~~~~~~~~~~~~l~s~~~d--------g~v   88 (314)
                      ...+++. +++.+ +.+..++ +.++|..+++.......  .. .......+++.|  +|++.++....        |.|
T Consensus        42 ~~G~~~~~~~g~l-~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~--~G~ly~t~~~~~~~~~~~~g~v  117 (246)
T PF08450_consen   42 PNGMAFDRPDGRL-YVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP--DGNLYVTDSGGGGASGIDPGSV  117 (246)
T ss_dssp             EEEEEEECTTSEE-EEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T--TS-EEEEEECCBCTTCGGSEEE
T ss_pred             CceEEEEccCCEE-EEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcC--CCCEEEEecCCCccccccccce
Confidence            5667777 56544 4455554 56669888865444433  11 235688999999  98877765543        446


Q ss_pred             EEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEee
Q 021291           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG  168 (314)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  168 (314)
                      ..++.. ++...  .  .......      .+                                 ++|+|+++.+++ +-
T Consensus       118 ~~~~~~-~~~~~--~--~~~~~~p------NG---------------------------------i~~s~dg~~lyv-~d  152 (246)
T PF08450_consen  118 YRIDPD-GKVTV--V--ADGLGFP------NG---------------------------------IAFSPDGKTLYV-AD  152 (246)
T ss_dssp             EEEETT-SEEEE--E--EEEESSE------EE---------------------------------EEEETTSSEEEE-EE
T ss_pred             EEECCC-CeEEE--E--ecCcccc------cc---------------------------------eEECCcchheee-cc
Confidence            666655 32110  0  0000000      00                                 679999987765 55


Q ss_pred             cCcCeEEEEecCCCce----eeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCc
Q 021291          169 EQLSEVEIWDLNTAER----CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (314)
Q Consensus       169 ~~d~~i~vwd~~~~~~----~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~  244 (314)
                      +..+.|..|++.....    ...+.         +.....+..-.++ +..+   |+ +.++....+.|.++|.+  ++.
T Consensus       153 s~~~~i~~~~~~~~~~~~~~~~~~~---------~~~~~~g~pDG~~-vD~~---G~-l~va~~~~~~I~~~~p~--G~~  216 (246)
T PF08450_consen  153 SFNGRIWRFDLDADGGELSNRRVFI---------DFPGGPGYPDGLA-VDSD---GN-LWVADWGGGRIVVFDPD--GKL  216 (246)
T ss_dssp             TTTTEEEEEEEETTTCCEEEEEEEE---------E-SSSSCEEEEEE-EBTT---S--EEEEEETTTEEEEEETT--SCE
T ss_pred             cccceeEEEeccccccceeeeeeEE---------EcCCCCcCCCcce-EcCC---CC-EEEEEcCCCEEEEECCC--ccE
Confidence            5678899999863222    11221         1011123355555 7766   65 66666778899999987  778


Q ss_pred             eEeeecCCcceEEEEEe-CCCCeE
Q 021291          245 LTAMKVHLEPVLCLSID-ESCNGG  267 (314)
Q Consensus       245 ~~~~~~h~~~v~~~~~~-~~~~~l  267 (314)
                      +..+......+++++|. ++...|
T Consensus       217 ~~~i~~p~~~~t~~~fgg~~~~~L  240 (246)
T PF08450_consen  217 LREIELPVPRPTNCAFGGPDGKTL  240 (246)
T ss_dssp             EEEEE-SSSSEEEEEEESTTSSEE
T ss_pred             EEEEcCCCCCEEEEEEECCCCCEE
Confidence            88777665689999994 454444

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.29  E-value=0.00092  Score=51.96  Aligned_cols=218  Identities=11%  Similarity=0.067  Sum_probs=110.9

Q ss_pred             EEecCCCCceeEEEEccCC-CEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEE
Q 021291           12 AVLRGHRASVTDVCFHQTK-PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC   90 (314)
Q Consensus        12 ~~l~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~i   90 (314)
                      +.+.+-.+.+..++|+|+. .++++....+.|...+. +|+.++.+..... .-.-.|++..  ++.++++--.++.+.+
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~-~D~EgI~y~g--~~~~vl~~Er~~~L~~   90 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGF-GDYEGITYLG--NGRYVLSEERDQRLYI   90 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS--SSEEEEEE-S--TTEEEEEETTTTEEEE
T ss_pred             eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCC-CCceeEEEEC--CCEEEEEEcCCCcEEE
Confidence            4566777789999999964 46677778889988886 5788887765431 2378888887  7666666656899999


Q ss_pred             EeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecC
Q 021291           91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ  170 (314)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  170 (314)
                      +++.......    ....    ...+.......                       .-.+-.+++|.+.++.++++--  
T Consensus        91 ~~~~~~~~~~----~~~~----~~~~~l~~~~~-----------------------~N~G~EGla~D~~~~~L~v~kE--  137 (248)
T PF06977_consen   91 FTIDDDTTSL----DRAD----VQKISLGFPNK-----------------------GNKGFEGLAYDPKTNRLFVAKE--  137 (248)
T ss_dssp             EEE----TT------EEE----EEEEE---S--------------------------SS--EEEEEETTTTEEEEEEE--
T ss_pred             EEEecccccc----chhh----ceEEecccccC-----------------------CCcceEEEEEcCCCCEEEEEeC--
Confidence            9985532211    1000    01111100000                       0000011889999888886532  


Q ss_pred             cCeEEEEecCC---CceeeeecccccCCCCCcC--CCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCce
Q 021291          171 LSEVEIWDLNT---AERCTRLHQNSCGGSPNFS--SKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL  245 (314)
Q Consensus       171 d~~i~vwd~~~---~~~~~~~~~~~~~~~~~h~--~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~  245 (314)
                      ..-..+|.++.   ...+......      .+.  .....-..++. |+|.  .|. +++....+..|..+|..  ++++
T Consensus       138 ~~P~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~d~S~l~-~~p~--t~~-lliLS~es~~l~~~d~~--G~~~  205 (248)
T PF06977_consen  138 RKPKRLYEVNGFPGGFDLFVSDDQ------DLDDDKLFVRDLSGLS-YDPR--TGH-LLILSDESRLLLELDRQ--GRVV  205 (248)
T ss_dssp             SSSEEEEEEESTT-SS--EEEE-H------HHH-HT--SS---EEE-EETT--TTE-EEEEETTTTEEEEE-TT----EE
T ss_pred             CCChhhEEEccccCccceeecccc------ccccccceeccccceE-EcCC--CCe-EEEEECCCCeEEEECCC--CCEE
Confidence            33455555543   1111111100      010  00122356666 8887  355 77778888999999954  7776


Q ss_pred             EeeecCC---------cceEEEEEeCCCCeEEEecCCCcEEEE
Q 021291          246 TAMKVHL---------EPVLCLSIDESCNGGISGGADQKIVLY  279 (314)
Q Consensus       246 ~~~~~h~---------~~v~~~~~~~~~~~l~s~s~dg~i~iw  279 (314)
                      ..+.-..         ...-.|+|+++|.+.++ |.-+..++|
T Consensus       206 ~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f  247 (248)
T PF06977_consen  206 SSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF  247 (248)
T ss_dssp             EEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred             EEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence            6655222         24678999999975554 455555544

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.27  E-value=1.2e-06  Score=76.82  Aligned_cols=218  Identities=11%  Similarity=0.151  Sum_probs=123.2

Q ss_pred             eEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCC
Q 021291           51 RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN  130 (314)
Q Consensus        51 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (314)
                      +..++++.+.  ..-+|++|+-  +.++|+.|+..|.|+++++.+|....  ....+........-+..++.........
T Consensus      1092 r~w~~frd~~--~~fTc~afs~--~~~hL~vG~~~Geik~~nv~sG~~e~--s~ncH~SavT~vePs~dgs~~Ltsss~S 1165 (1516)
T KOG1832|consen 1092 RSWRSFRDET--ALFTCIAFSG--GTNHLAVGSHAGEIKIFNVSSGSMEE--SVNCHQSAVTLVEPSVDGSTQLTSSSSS 1165 (1516)
T ss_pred             ccchhhhccc--cceeeEEeec--CCceEEeeeccceEEEEEccCccccc--cccccccccccccccCCcceeeeecccc
Confidence            3445566666  5599999999  88999999999999999999986533  2222222221111111111111111111


Q ss_pred             -CCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeee
Q 021291          131 -EPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMA  209 (314)
Q Consensus       131 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  209 (314)
                       -....|+..........+.+...+.|+..-..-++  |.......+||++++..+.++-.       +...  ...-..
T Consensus      1166 ~PlsaLW~~~s~~~~~Hsf~ed~~vkFsn~~q~r~~--gt~~d~a~~YDvqT~~~l~tylt-------~~~~--~~y~~n 1234 (1516)
T KOG1832|consen 1166 SPLSALWDASSTGGPRHSFDEDKAVKFSNSLQFRAL--GTEADDALLYDVQTCSPLQTYLT-------DTVT--SSYSNN 1234 (1516)
T ss_pred             CchHHHhccccccCccccccccceeehhhhHHHHHh--cccccceEEEecccCcHHHHhcC-------cchh--hhhhcc
Confidence             12345555443333334444333667655433332  44345789999999988777431       1111  111112


Q ss_pred             EEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291          210 VQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF  289 (314)
Q Consensus       210 ~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~  289 (314)
                      ++.|+|++   . +++   .||  .+||.+. .+.++.+...+..+ .=.|+|+|..++.-+     .|||+++-+.+..
T Consensus      1235 ~a~FsP~D---~-LIl---ndG--vLWDvR~-~~aIh~FD~ft~~~-~G~FHP~g~eVIINS-----EIwD~RTF~lLh~ 1298 (1516)
T KOG1832|consen 1235 LAHFSPCD---T-LIL---NDG--VLWDVRI-PEAIHRFDQFTDYG-GGGFHPSGNEVIINS-----EIWDMRTFKLLHS 1298 (1516)
T ss_pred             ccccCCCc---c-eEe---eCc--eeeeecc-HHHHhhhhhheecc-cccccCCCceEEeec-----hhhhhHHHHHHhc
Confidence            22499983   2 343   344  3799998 57777776555332 235899999888765     4799987765543


Q ss_pred             -----eeeeeecCCCce
Q 021291          290 -----GIGFVCDQEGNK  301 (314)
Q Consensus       290 -----~~~~~~~~~~~~  301 (314)
                           ....++...|..
T Consensus      1299 VP~Ldqc~VtFNstG~V 1315 (1516)
T KOG1832|consen 1299 VPSLDQCAVTFNSTGDV 1315 (1516)
T ss_pred             CccccceEEEeccCccc
Confidence                 234455555543

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.22  E-value=0.0011  Score=55.60  Aligned_cols=216  Identities=10%  Similarity=0.058  Sum_probs=111.2

Q ss_pred             ceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEE-------------------------------------------EEE
Q 021291           20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV-------------------------------------------SSS   56 (314)
Q Consensus        20 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~-------------------------------------------~~~   56 (314)
                      .|+.+.|+++..-|+.|...|.|.||.....+..                                           ..+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            5889999998889999999999999975432111                                           011


Q ss_pred             eccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecce----------eeEEEeeeeecccccc
Q 021291           57 WVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNS----------YHFCKLSLVKEPYANA  126 (314)
Q Consensus        57 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~  126 (314)
                      ....  ++|++++.+.   -.+++.|..+|.+.|.|++....+-    ......          .....|.+.       
T Consensus        83 ~~~~--g~vtal~~S~---iGFvaigy~~G~l~viD~RGPavI~----~~~i~~~~~~~~~~~~vt~ieF~vm-------  146 (395)
T PF08596_consen   83 DAKQ--GPVTALKNSD---IGFVAIGYESGSLVVIDLRGPAVIY----NENIRESFLSKSSSSYVTSIEFSVM-------  146 (395)
T ss_dssp             ---S---SEEEEEE-B---TSEEEEEETTSEEEEEETTTTEEEE----EEEGGG--T-SS----EEEEEEEEE-------
T ss_pred             eccC--CcEeEEecCC---CcEEEEEecCCcEEEEECCCCeEEe----eccccccccccccccCeeEEEEEEE-------
Confidence            1222  5699999875   4899999999999999998775432    211111          001111111       


Q ss_pred             ccCCCCcceeeccCCceeeecCCCCCCceeccCC-CceEEEeecCcCeEEEEecC--C-CceeeeecccccCCCCCcCCC
Q 021291          127 KQANEPKDCYEREVGETVDTDSLCDSKDDVPAEG-PKYMAVAGEQLSEVEIWDLN--T-AERCTRLHQNSCGGSPNFSSK  202 (314)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~d~~i~vwd~~--~-~~~~~~~~~~~~~~~~~h~~~  202 (314)
                                                  .+.-|+ ..+++.+|+..|.+.+|.+.  . +.-...+..        ....
T Consensus       147 ----------------------------~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~--------~~~~  190 (395)
T PF08596_consen  147 ----------------------------TLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAG--------ATTN  190 (395)
T ss_dssp             ----------------------------E-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEE--------EE--
T ss_pred             ----------------------------ecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEee--------cccc
Confidence                                        111111 12344467777999888764  1 212222221        1011


Q ss_pred             CCceeeeEEEecCCC-----------------CCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEE-----
Q 021291          203 GRGMCMAVQAYLPSK-----------------SQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSI-----  260 (314)
Q Consensus       203 ~~~~~~~~~~~~p~~-----------------~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~-----  260 (314)
                      ..+.+..+..|+.+.                 ..-. -++....+..++++..-+ .+..+......-....+.+     
T Consensus       191 ~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~-g~vVvvSe~~irv~~~~~-~k~~~K~~~~~~~~~~~~vv~~~~  268 (395)
T PF08596_consen  191 HDSPILSIIPINADTGESALATISAMQGLSKGISIP-GYVVVVSESDIRVFKPPK-SKGAHKSFDDPFLCSSASVVPTIS  268 (395)
T ss_dssp             SS----EEEEEETTT--B-B-BHHHHHGGGGT-----EEEEEE-SSEEEEE-TT----EEEEE-SS-EEEEEEEEEEEE-
T ss_pred             CCCceEEEEEEECCCCCcccCchhHhhccccCCCcC-cEEEEEcccceEEEeCCC-CcccceeeccccccceEEEEeecc
Confidence            233444444342210                 0011 233334467899999887 4444433322222333444     


Q ss_pred             eCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291          261 DESCNGGISGGADQKIVLYNLDHSTYVLF  289 (314)
Q Consensus       261 ~~~~~~l~s~s~dg~i~iw~~~~~~~~~~  289 (314)
                      ...+..|++-..+|.|+++.+..-+.+..
T Consensus       269 ~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~  297 (395)
T PF08596_consen  269 RNGGYCLVCLFNNGSIRIYSLPSLKEIKS  297 (395)
T ss_dssp             EEEEEEEEEEETTSEEEEEETTT--EEEE
T ss_pred             cCCceEEEEEECCCcEEEEECCCchHhhc
Confidence            23566788888999999999999887754

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.20  E-value=0.0004  Score=45.86  Aligned_cols=68  Identities=21%  Similarity=0.320  Sum_probs=52.7

Q ss_pred             eeEEEEcc---CC-CEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCC
Q 021291           21 VTDVCFHQ---TK-PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG   96 (314)
Q Consensus        21 v~~~~~~~---~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~   96 (314)
                      |++|++..   || +.|+.|+.|..||||+-  .+.+..+...   +.|.++.-..  . ..|+.+..+|+|-+|+-...
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~---~~v~~L~~~~--~-~~F~Y~l~NGTVGvY~~~~R   73 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITET---DKVTSLCSLG--G-GRFAYALANGTVGVYDRSQR   73 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecc---cceEEEEEcC--C-CEEEEEecCCEEEEEeCcce
Confidence            67777765   33 58999999999999984  3666666554   4588888877  4 78999999999999987543

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.18  E-value=1.7e-05  Score=66.76  Aligned_cols=77  Identities=17%  Similarity=0.226  Sum_probs=61.2

Q ss_pred             CCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecC
Q 021291          203 GRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD  282 (314)
Q Consensus       203 ~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~  282 (314)
                      ..+.+.+++ ++|++.    .++.|+.||.|.+||... +  +..+....-..+.++|+|+|..+++|+..|.+.+||+.
T Consensus       258 L~s~v~~ca-~sp~E~----kLvlGC~DgSiiLyD~~~-~--~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  258 LPSQVICCA-RSPSED----KLVLGCEDGSIILYDTTR-G--VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             cCCcceEEe-cCcccc----eEEEEecCCeEEEEEcCC-C--eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence            355677776 999844    899999999999999875 3  23333445678899999999999999999999999987


Q ss_pred             CCeee
Q 021291          283 HSTYV  287 (314)
Q Consensus       283 ~~~~~  287 (314)
                      -....
T Consensus       330 Lspi~  334 (545)
T PF11768_consen  330 LSPIK  334 (545)
T ss_pred             cCccc
Confidence            55433

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.16  E-value=0.0003  Score=60.95  Aligned_cols=185  Identities=14%  Similarity=0.041  Sum_probs=114.8

Q ss_pred             EccCCCEEE-EecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC----eEEEEeCCCCCCCC
Q 021291           26 FHQTKPILF-AGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG----TVKCWDIENGGLSS  100 (314)
Q Consensus        26 ~~~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg----~v~iwd~~~~~~~~  100 (314)
                      ++|||+.+. +.-..+.+.+.|.++.+....+....   ....+++++  +++++++.+.+.    ++..-+..+..   
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg---npd~v~~sp--dGk~afvTsyNsE~G~tl~em~a~e~d---  271 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG---NLDNVDTDY--DGKYAFSTCYNSEEGVTLAEMMAAERD---  271 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEeCC---CcccceECC--CCCEEEEeccCcccCcceeeeccccCc---
Confidence            456776553 33345678888888777766665543   245678888  888888776421    22222211110   


Q ss_pred             CCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecC
Q 021291          101 NPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLN  180 (314)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~  180 (314)
                                 ....+.+...                                ..+.++|++.++  +  ++.|.+.|.+
T Consensus       272 -----------~~vvfni~~i--------------------------------ea~vkdGK~~~V--~--gn~V~VID~~  304 (635)
T PRK02888        272 -----------WVVVFNIARI--------------------------------EEAVKAGKFKTI--G--GSKVPVVDGR  304 (635)
T ss_pred             -----------eEEEEchHHH--------------------------------HHhhhCCCEEEE--C--CCEEEEEECC
Confidence                       1111111100                                124567776654  2  4789999999


Q ss_pred             C-----CceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCC-----------c
Q 021291          181 T-----AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI-----------P  244 (314)
Q Consensus       181 ~-----~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~-----------~  244 (314)
                      +     .+.+..++.             ......+. ++||   |+.+++++..+.+|.|.|+.+...           .
T Consensus       305 t~~~~~~~v~~yIPV-------------GKsPHGV~-vSPD---GkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~v  367 (635)
T PRK02888        305 KAANAGSALTRYVPV-------------PKNPHGVN-TSPD---GKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAV  367 (635)
T ss_pred             ccccCCcceEEEEEC-------------CCCccceE-ECCC---CCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceE
Confidence            8     345555542             22455565 9998   775778888899999999986322           1


Q ss_pred             eEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCC
Q 021291          245 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH  283 (314)
Q Consensus       245 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~  283 (314)
                      +.+..- ...-...+|+++|....|--.|..|..|+++.
T Consensus       368 vaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        368 VAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             EEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            333332 22335678999999888888999999999986

>smart00320 WD40 WD40 repeats

Probab=98.04  E-value=1.6e-05  Score=41.86  Aligned_cols=39  Identities=26%  Similarity=0.308  Sum_probs=34.4

Q ss_pred             CCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEe
Q 021291          242 GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN  280 (314)
Q Consensus       242 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~  280 (314)
                      .++...+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            345677788999999999999889999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.03  E-value=0.0033  Score=53.49  Aligned_cols=185  Identities=12%  Similarity=0.070  Sum_probs=95.5

Q ss_pred             ceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEE
Q 021291           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (314)
Q Consensus        10 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~   89 (314)
                      .++.+-...-....+.++|+|++++. ..||.-.|+.....+....  +     .-....|.+  . +.+++-...++|.
T Consensus        24 ~~k~lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~--G-----~g~~~vw~~--~-n~yAv~~~~~~I~   92 (443)
T PF04053_consen   24 SVKELGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF--G-----SGLSFVWSS--R-NRYAVLESSSTIK   92 (443)
T ss_dssp             --EEEEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE--E-----E-SEEEE-T--S-SEEEEE-TTS-EE
T ss_pred             EeccCCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc--C-----ceeEEEEec--C-ccEEEEECCCeEE
Confidence            34445455566889999999998888 5677888988554444332  1     135678887  5 5577777788999


Q ss_pred             EEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeec
Q 021291           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE  169 (314)
Q Consensus        90 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  169 (314)
                      |+.--..+..+  .+..... ....                                         |.  |. ++++.+.
T Consensus        93 I~kn~~~~~~k--~i~~~~~-~~~I-----------------------------------------f~--G~-LL~~~~~  125 (443)
T PF04053_consen   93 IYKNFKNEVVK--SIKLPFS-VEKI-----------------------------------------FG--GN-LLGVKSS  125 (443)
T ss_dssp             EEETTEE-TT-------SS--EEEE-----------------------------------------E---SS-SEEEEET
T ss_pred             EEEcCccccce--EEcCCcc-cceE-----------------------------------------Ec--Cc-EEEEECC
Confidence            96322222211  1111110 0000                                         22  44 5554543


Q ss_pred             CcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCC-------
Q 021291          170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG-------  242 (314)
Q Consensus       170 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~-------  242 (314)
                        +.|.+||+.+++.+..+..             . .+..+. |+++   |. +++..+. ..+.+++.+. .       
T Consensus       126 --~~i~~yDw~~~~~i~~i~v-------------~-~vk~V~-Ws~~---g~-~val~t~-~~i~il~~~~-~~~~~~~~  182 (443)
T PF04053_consen  126 --DFICFYDWETGKLIRRIDV-------------S-AVKYVI-WSDD---GE-LVALVTK-DSIYILKYNL-EAVAAIPE  182 (443)
T ss_dssp             --TEEEEE-TTT--EEEEESS---------------E-EEEE-E-TT---SS-EEEEE-S--SEEEEEE-H-HHHHHBTT
T ss_pred             --CCEEEEEhhHcceeeEEec-------------C-CCcEEE-EECC---CC-EEEEEeC-CeEEEEEecc-hhcccccc
Confidence              5899999999999998872             2 356776 9988   55 6666664 4788877653 1       


Q ss_pred             ----CceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEE
Q 021291          243 ----IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVL  278 (314)
Q Consensus       243 ----~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~i  278 (314)
                          .....+..-...|.+..|..+ -++.|...  .++.
T Consensus       183 ~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~~--~lkY  219 (443)
T PF04053_consen  183 EGVEDAFELIHEISERIKSGCWVED-CFIYTTSN--HLKY  219 (443)
T ss_dssp             TB-GGGEEEEEEE-S--SEEEEETT-EEEEE-TT--EEEE
T ss_pred             cCchhceEEEEEecceeEEEEEEcC-EEEEEcCC--eEEE
Confidence                033444333567888888777 34444332  4554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.01  E-value=0.00088  Score=56.64  Aligned_cols=114  Identities=12%  Similarity=0.096  Sum_probs=66.9

Q ss_pred             ceeccCCCceEEEeecCcCe--EEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCC
Q 021291          154 DDVPAEGPKYMAVAGEQLSE--VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG  231 (314)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~--i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg  231 (314)
                      -+|+|||+.+++ +...|+.  |+++|+..+.... +..         .   .+....- .|+|+   |+.++++.+..|
T Consensus       243 P~fspDG~~l~f-~~~rdg~~~iy~~dl~~~~~~~-Lt~---------~---~gi~~~P-s~spd---G~~ivf~Sdr~G  304 (425)
T COG0823         243 PAFSPDGSKLAF-SSSRDGSPDIYLMDLDGKNLPR-LTN---------G---FGINTSP-SWSPD---GSKIVFTSDRGG  304 (425)
T ss_pred             ccCCCCCCEEEE-EECCCCCccEEEEcCCCCccee-ccc---------C---CccccCc-cCCCC---CCEEEEEeCCCC
Confidence            569999987766 4555665  6667877766333 331         1   1111122 39998   665667777777


Q ss_pred             cEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecC-CCc--EEEEecCCCe
Q 021291          232 SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA-DQK--IVLYNLDHST  285 (314)
Q Consensus       232 ~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-dg~--i~iw~~~~~~  285 (314)
                      .-.||-.+..+.....+......-..-.|+|+|.+|+..+. +|.  |.+.|+.++.
T Consensus       305 ~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         305 RPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             CcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence            65555443324444444433333236678999999877664 344  6666666555

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.97  E-value=0.0096  Score=51.92  Aligned_cols=70  Identities=23%  Similarity=0.248  Sum_probs=45.2

Q ss_pred             CEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEee---------cCCeEEEEeCCCCCCCC
Q 021291           31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG---------RDGTVKCWDIENGGLSS  100 (314)
Q Consensus        31 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~---------~dg~v~iwd~~~~~~~~  100 (314)
                      ..++.++.+|.|.-+|.++|+.+..+........-..+.-+|.-.+..++.++         .++.|..+|..+++...
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W  189 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLW  189 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceee
Confidence            57788889999999999999999887654320000112222211224455543         36889999999998765

The alignment model contains an 8-bladed beta-propeller.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.92  E-value=0.00039  Score=61.42  Aligned_cols=71  Identities=18%  Similarity=0.253  Sum_probs=61.7

Q ss_pred             eeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCC
Q 021291           21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN   95 (314)
Q Consensus        21 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~   95 (314)
                      +++++|+|..-.|+.|-.-|.+.+|...+.+.-.....|.  .+|..+.|++  +|+.++++..-|.|.+|....
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~--a~i~~l~wS~--~G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHP--APIQGLDWSH--DGTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCC--CCceeEEecC--CCCeEEEcCCCceeEEEEeee
Confidence            4679999988889999999999999988776666666677  5599999999  999999999999999998763

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.89  E-value=0.0022  Score=54.27  Aligned_cols=168  Identities=12%  Similarity=0.022  Sum_probs=96.7

Q ss_pred             EecCCCCceeEEEEccCCCEEEEe---cCC-CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEE-EeecCCe
Q 021291           13 VLRGHRASVTDVCFHQTKPILFAG---TTG-GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGT   87 (314)
Q Consensus        13 ~l~~h~~~v~~~~~~~~~~~l~s~---~~d-g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~   87 (314)
                      .+..-...+..-+|+|++..++-.   ... ..+.++++++++....+...   ..-..-+|+|  ||+.|+ +...||.
T Consensus       187 ~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~---g~~~~P~fsp--DG~~l~f~~~rdg~  261 (425)
T COG0823         187 KLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFN---GNNGAPAFSP--DGSKLAFSSSRDGS  261 (425)
T ss_pred             EecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccC---CccCCccCCC--CCCEEEEEECCCCC
Confidence            333344566777899988766543   222 46999999988765554422   1245678999  888777 5555665


Q ss_pred             --EEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCce--eeecCCCCC--CceeccCCC
Q 021291           88 --VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGET--VDTDSLCDS--KDDVPAEGP  161 (314)
Q Consensus        88 --v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~  161 (314)
                        |.+.|+.++...+  +..... ......+++.+.........++...++.......  .........  .-.|+|+|+
T Consensus       262 ~~iy~~dl~~~~~~~--Lt~~~g-i~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~  338 (425)
T COG0823         262 PDIYLMDLDGKNLPR--LTNGFG-INTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGD  338 (425)
T ss_pred             ccEEEEcCCCCccee--cccCCc-cccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCC
Confidence              5566777665322  111111 1224455666665566666666666665544322  111221111  278999999


Q ss_pred             ceEEEeecCcCe--EEEEecCCCceeeeec
Q 021291          162 KYMAVAGEQLSE--VEIWDLNTAERCTRLH  189 (314)
Q Consensus       162 ~~~~~~g~~d~~--i~vwd~~~~~~~~~~~  189 (314)
                      .++..+ ..+|.  |.+.|+.++...+.+.
T Consensus       339 ~i~~~~-~~~g~~~i~~~~~~~~~~~~~lt  367 (425)
T COG0823         339 KIVFES-SSGGQWDIDKNDLASGGKIRILT  367 (425)
T ss_pred             EEEEEe-ccCCceeeEEeccCCCCcEEEcc
Confidence            887755 33454  7777776665444433

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.89  E-value=7.7e-05  Score=63.32  Aligned_cols=79  Identities=18%  Similarity=0.227  Sum_probs=69.3

Q ss_pred             CCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEE-EEEEcccCCCCeEEEeecCCeEEEEeCCC
Q 021291           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIV-SVATGPSIGLNKVISQGRDGTVKCWDIEN   95 (314)
Q Consensus        17 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~s~~~dg~v~iwd~~~   95 (314)
                      -...|.-+.|+|.-.++|++..+|.|.+..+. .+.+.++..+..+  ++ +++|.|  ||+.|+.|-.||+|++-|+++
T Consensus        19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~--v~~sL~W~~--DGkllaVg~kdG~I~L~Dve~   93 (665)
T KOG4640|consen   19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGEN--VTASLCWRP--DGKLLAVGFKDGTIRLHDVEK   93 (665)
T ss_pred             cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCc--cceeeeecC--CCCEEEEEecCCeEEEEEccC
Confidence            34568889999999999999999999999988 7888888877643  66 999999  999999999999999999999


Q ss_pred             CCCCC
Q 021291           96 GGLSS  100 (314)
Q Consensus        96 ~~~~~  100 (314)
                      +..+.
T Consensus        94 ~~~l~   98 (665)
T KOG4640|consen   94 GGRLV   98 (665)
T ss_pred             CCcee
Confidence            87654

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.87  E-value=3.2e-05  Score=67.88  Aligned_cols=114  Identities=15%  Similarity=0.147  Sum_probs=83.0

Q ss_pred             ceeccCCCceEEEee--cCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCC
Q 021291          154 DDVPAEGPKYMAVAG--EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG  231 (314)
Q Consensus       154 ~~~~~~~~~~~~~~g--~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg  231 (314)
                      .+|+|..+.+.+++-  ...|.|.||- .+|++-.....             .-.+.+++ |+|..    ..|+.|-.-|
T Consensus        21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~-------------P~hatSLC-WHpe~----~vLa~gwe~g   81 (1416)
T KOG3617|consen   21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY-------------PVHATSLC-WHPEE----FVLAQGWEMG   81 (1416)
T ss_pred             cccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc-------------ceehhhhc-cChHH----HHHhhccccc
Confidence            568898775544332  2357788883 55664433331             11344565 99963    2889999999


Q ss_pred             cEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeee
Q 021291          232 SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYV  287 (314)
Q Consensus       232 ~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~  287 (314)
                      .+.+|...+ .+.-.....|..+|..+.|+++|..|+|+..-|.|.+|..+...++
T Consensus        82 ~~~v~~~~~-~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~  136 (1416)
T KOG3617|consen   82 VSDVQKTNT-TETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEI  136 (1416)
T ss_pred             eeEEEecCC-ceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeecccc
Confidence            999999886 5555555689999999999999999999999999999998844443

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.86  E-value=0.0019  Score=56.19  Aligned_cols=110  Identities=13%  Similarity=0.130  Sum_probs=62.8

Q ss_pred             ceeccCCCceEEEeecCcCeEEEEecCCCceeee--ecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCC
Q 021291          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTR--LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG  231 (314)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~--~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg  231 (314)
                      +.++|||+++++ ++..+.+|.|+|+.+.+....  +......  .+... ..-.....+ |.++   |. ...+-..|.
T Consensus       326 V~vSPDGkylyV-anklS~tVSVIDv~k~k~~~~~~~~~~~~v--vaeve-vGlGPLHTa-FDg~---G~-aytslf~ds  396 (635)
T PRK02888        326 VNTSPDGKYFIA-NGKLSPTVTVIDVRKLDDLFDGKIKPRDAV--VAEPE-LGLGPLHTA-FDGR---GN-AYTTLFLDS  396 (635)
T ss_pred             eEECCCCCEEEE-eCCCCCcEEEEEChhhhhhhhccCCccceE--EEeec-cCCCcceEE-ECCC---CC-EEEeEeecc
Confidence            679999998776 566789999999987653110  0000000  00000 111223333 8776   55 788888899


Q ss_pred             cEEEEEccCC---------CCceEeeecCCcceEEEE-----EeCCCCeEEEecC
Q 021291          232 SILVWDIRNP---------GIPLTAMKVHLEPVLCLS-----IDESCNGGISGGA  272 (314)
Q Consensus       232 ~i~vwd~~~~---------~~~~~~~~~h~~~v~~~~-----~~~~~~~l~s~s~  272 (314)
                      .|..||+...         ...+..+.-|-.+..-.+     -.++|++|++...
T Consensus       397 qv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk  451 (635)
T PRK02888        397 QIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNK  451 (635)
T ss_pred             eeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence            9999998741         123444544443332222     2677777777643

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.86  E-value=0.0095  Score=48.03  Aligned_cols=184  Identities=13%  Similarity=0.099  Sum_probs=113.5

Q ss_pred             CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeec----------CCeEEEEeCCCCCCCCCCeeeeecc
Q 021291           40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR----------DGTVKCWDIENGGLSSNPSLTIKTN  109 (314)
Q Consensus        40 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~----------dg~v~iwd~~~~~~~~~~~~~~~~~  109 (314)
                      +.+.|+|.++++.+-.+...-    .-.+..+|  +++.+++++.          ...|.+||..+-....  .+.+...
T Consensus        17 ~rv~viD~d~~k~lGmi~~g~----~~~~~~sp--dgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~--EI~iP~k   88 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTGF----LGNVALSP--DGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTG--EIEIPPK   88 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEES----SEEEEE-T--TSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEE--EEEETTS
T ss_pred             ceEEEEECCCCcEEEEeeccc----CCceeECC--CCCEEEEEEEEEeccccccceeEEEEEecCcCcccc--eEecCCc
Confidence            489999999999888776543    34567889  9898887542          4469999999875433  1222221


Q ss_pred             eeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC-ceeccCCCceEEEeecCcCeEEEEecCCCceeeee
Q 021291          110 SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRL  188 (314)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~  188 (314)
                      +.....                                  .+.. .+++.+|+.+++.--+--..|.|-|+..++.+..+
T Consensus        89 ~R~~~~----------------------------------~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei  134 (342)
T PF06433_consen   89 PRAQVV----------------------------------PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEI  134 (342)
T ss_dssp             -B--BS------------------------------------GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEE
T ss_pred             chheec----------------------------------ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeee
Confidence            010000                                  0000 56889999888876666678999999999988877


Q ss_pred             cccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeee----cCCcceE-EEEEeCC
Q 021291          189 HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK----VHLEPVL-CLSIDES  263 (314)
Q Consensus       189 ~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~----~h~~~v~-~~~~~~~  263 (314)
                      ..             . -|..   .-|.++  + -+.+-|.||.+.-..+...++......    .-.+++. .-++...
T Consensus       135 ~~-------------P-GC~~---iyP~~~--~-~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~  194 (342)
T PF06433_consen  135 DT-------------P-GCWL---IYPSGN--R-GFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRD  194 (342)
T ss_dssp             EG-------------T-SEEE---EEEEET--T-EEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETT
T ss_pred             cC-------------C-CEEE---EEecCC--C-ceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECC
Confidence            72             1 2333   334422  1 577888899999999986576653322    1122222 2334444


Q ss_pred             CCeEEEecCCCcEEEEecCCCe
Q 021291          264 CNGGISGGADQKIVLYNLDHST  285 (314)
Q Consensus       264 ~~~l~s~s~dg~i~iw~~~~~~  285 (314)
                      +..++--+.+|.|+--|+....
T Consensus       195 ~~~~~F~Sy~G~v~~~dlsg~~  216 (342)
T PF06433_consen  195 GGRLYFVSYEGNVYSADLSGDS  216 (342)
T ss_dssp             TTEEEEEBTTSEEEEEEETTSS
T ss_pred             CCeEEEEecCCEEEEEeccCCc
Confidence            4344446788888888887665

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.85  E-value=4.4e-06  Score=70.72  Aligned_cols=169  Identities=20%  Similarity=0.252  Sum_probs=101.7

Q ss_pred             EecCCCCceeEEEEcc-CCCEEEEec----CCCeEEEEeCCCC--eE--EEEEeccCCcccEEEEEEcccCCCCeEEEee
Q 021291           13 VLRGHRASVTDVCFHQ-TKPILFAGT----TGGELRIWDTVQH--RT--VSSSWVHSAAHGIVSVATGPSIGLNKVISQG   83 (314)
Q Consensus        13 ~l~~h~~~v~~~~~~~-~~~~l~s~~----~dg~v~iwd~~~~--~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (314)
                      ...+|...+++++|++ |.+.||.|-    .|..+.|||+.++  .+  -..+... ......+++|..  +.+++++|.
T Consensus        97 ~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~-~l~gqns~cwlr--d~klvlaGm  173 (783)
T KOG1008|consen   97 VTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSS-TLDGQNSVCWLR--DTKLVLAGM  173 (783)
T ss_pred             ecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccc-cccCcccccccc--Ccchhhccc
Confidence            3456788999999999 677888773    3668999999876  22  2223221 113366888886  878888999


Q ss_pred             cCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCce
Q 021291           84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY  163 (314)
Q Consensus        84 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (314)
                      ....++++|++......   ..+.+..                                        ++++.+.|-....
T Consensus       174 ~sr~~~ifdlRqs~~~~---~svnTk~----------------------------------------vqG~tVdp~~~nY  210 (783)
T KOG1008|consen  174 TSRSVHIFDLRQSLDSV---SSVNTKY----------------------------------------VQGITVDPFSPNY  210 (783)
T ss_pred             ccchhhhhhhhhhhhhh---hhhhhhh----------------------------------------cccceecCCCCCc
Confidence            99999999998432111   0111111                                        1113345533333


Q ss_pred             EEEeecCcCeEEEEe-cCCCc-eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccC
Q 021291          164 MAVAGEQLSEVEIWD-LNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (314)
Q Consensus       164 ~~~~g~~d~~i~vwd-~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~  240 (314)
                      +  +...|+.|.+|| .+.-+ ++..+..        ...........++ |.|..+ |. ..+..-..++|+++|+..
T Consensus       211 ~--cs~~dg~iAiwD~~rnienpl~~i~~--------~~N~~~~~l~~~a-ycPtrt-gl-la~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  211 F--CSNSDGDIAIWDTYRNIENPLQIILR--------NENKKPKQLFALA-YCPTRT-GL-LAVLSRDSITIRLYDICV  276 (783)
T ss_pred             e--eccccCceeeccchhhhccHHHHHhh--------CCCCcccceeeEE-eccCCc-ch-hhhhccCcceEEEecccc
Confidence            4  344589999999 44333 2222221        1111122467777 999864 54 333444557899999864

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.85  E-value=0.008  Score=49.38  Aligned_cols=184  Identities=10%  Similarity=0.095  Sum_probs=103.6

Q ss_pred             CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCC-----CCeEEEeec----------CCeEEEEeCCCCCCCCCCee
Q 021291           40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIG-----LNKVISQGR----------DGTVKCWDIENGGLSSNPSL  104 (314)
Q Consensus        40 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~l~s~~~----------dg~v~iwd~~~~~~~~~~~~  104 (314)
                      +.|++.|..+.+.+..+..... +.+.+++.....+     ..+|+.|..          .|.|.++++.........+.
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~-E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~   80 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPN-EHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK   80 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETT-EEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCC-ceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence            4689999888888777665543 4466655433211     356776543          28899999987410000011


Q ss_pred             eeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCc-
Q 021291          105 TIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAE-  183 (314)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~-  183 (314)
                      ...........                                      .++.+-+.+++++ .  ++.|.+|++...+ 
T Consensus        81 ~i~~~~~~g~V--------------------------------------~ai~~~~~~lv~~-~--g~~l~v~~l~~~~~  119 (321)
T PF03178_consen   81 LIHSTEVKGPV--------------------------------------TAICSFNGRLVVA-V--GNKLYVYDLDNSKT  119 (321)
T ss_dssp             EEEEEEESS-E--------------------------------------EEEEEETTEEEEE-E--TTEEEEEEEETTSS
T ss_pred             EEEEEeecCcc--------------------------------------eEhhhhCCEEEEe-e--cCEEEEEEccCccc
Confidence            11111111111                                      1233334555543 3  3789999998777 


Q ss_pred             eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeee--cCCcceEEEEEe
Q 021291          184 RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK--VHLEPVLCLSID  261 (314)
Q Consensus       184 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~--~h~~~v~~~~~~  261 (314)
                      ....-.         +.  ....+.++. ...+      ++++|.....+.++..+.....+..+.  .....++++.|-
T Consensus       120 l~~~~~---------~~--~~~~i~sl~-~~~~------~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l  181 (321)
T PF03178_consen  120 LLKKAF---------YD--SPFYITSLS-VFKN------YILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFL  181 (321)
T ss_dssp             EEEEEE---------E---BSSSEEEEE-EETT------EEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE
T ss_pred             chhhhe---------ec--ceEEEEEEe-cccc------EEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEe
Confidence            332222         10  122566665 3322      899999888999886654233333333  234568888887


Q ss_pred             CCCCeEEEecCCCcEEEEecCC
Q 021291          262 ESCNGGISGGADQKIVLYNLDH  283 (314)
Q Consensus       262 ~~~~~l~s~s~dg~i~iw~~~~  283 (314)
                      +++..++.+..+|.+.++..+.
T Consensus       182 ~d~~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  182 VDEDTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             -SSSEEEEEETTSEEEEEEE-S
T ss_pred             cCCcEEEEEcCCCeEEEEEECC
Confidence            5556889999999999998873

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.85  E-value=0.0001  Score=62.61  Aligned_cols=93  Identities=15%  Similarity=0.124  Sum_probs=74.5

Q ss_pred             eeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceE-EEEEeCCCCeEEEecCCCcEEEEecCCC
Q 021291          206 MCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVL-CLSIDESCNGGISGGADQKIVLYNLDHS  284 (314)
Q Consensus       206 ~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~s~dg~i~iw~~~~~  284 (314)
                      .+..+. |+|...    ++|.+..+|.|.+..+.  .+.+.++.-|...++ +++|.|||++|+.|=.||+|++.|++++
T Consensus        22 ~i~~~e-wnP~~d----LiA~~t~~gelli~R~n--~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~   94 (665)
T KOG4640|consen   22 NIKRIE-WNPKMD----LIATRTEKGELLIHRLN--WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKG   94 (665)
T ss_pred             ceEEEE-EcCccc----hhheeccCCcEEEEEec--cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCC
Confidence            344455 999744    89999999999999887  677888887888887 9999999999999999999999999999


Q ss_pred             eeeEeeeeeeecCCCceeceeecc
Q 021291          285 TYVLFGIGFVCDQEGNKFGTTWHI  308 (314)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~w~~  308 (314)
                      ..+...   .++++..+....|-+
T Consensus        95 ~~l~~~---~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   95 GRLVSF---LFSVETDISKGIWDR  115 (665)
T ss_pred             Cceecc---ccccccchheeeccc
Confidence            877542   344566666666643

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.83  E-value=0.0049  Score=53.56  Aligned_cols=77  Identities=10%  Similarity=0.091  Sum_probs=58.8

Q ss_pred             CCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeE---EEEEeccC-CcccEEEEEEcccCCCCeEEEeecCCeEEEEe
Q 021291           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT---VSSSWVHS-AAHGIVSVATGPSIGLNKVISQGRDGTVKCWD   92 (314)
Q Consensus        17 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~---~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd   92 (314)
                      -.+.+..+..+++..++|.|+..|.|.++.+..+..   ...-..+. +...|++++|++  ++..+++|...|+|.+-.
T Consensus        75 ~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~--~~~k~ysGD~~Gkv~~~~  152 (726)
T KOG3621|consen   75 ATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSK--NGMKLYSGDSQGKVVLTE  152 (726)
T ss_pred             ccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecc--cccEEeecCCCceEEEEE
Confidence            345566778888888999999999999998876322   11111111 236699999999  999999999999999988


Q ss_pred             CCC
Q 021291           93 IEN   95 (314)
Q Consensus        93 ~~~   95 (314)
                      +..
T Consensus       153 L~s  155 (726)
T KOG3621|consen  153 LDS  155 (726)
T ss_pred             ech
Confidence            877

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.82  E-value=0.0039  Score=52.30  Aligned_cols=84  Identities=14%  Similarity=0.153  Sum_probs=57.4

Q ss_pred             ceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccC------CcccEEEEEEccc---CCC---C
Q 021291           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS------AAHGIVSVATGPS---IGL---N   77 (314)
Q Consensus        10 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~------~~~~v~~~~~~~~---~~~---~   77 (314)
                      |...++...++|++++.|.-| ++|.|..+|.+.|.|++....+..-....      ....|+++.|.-.   .|+   -
T Consensus        78 P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi  156 (395)
T PF08596_consen   78 PLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSI  156 (395)
T ss_dssp             EEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEE
T ss_pred             chhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccce
Confidence            455666678999999998666 99999999999999998777766532221      2345888988731   132   3


Q ss_pred             eEEEeecCCeEEEEeCC
Q 021291           78 KVISQGRDGTVKCWDIE   94 (314)
Q Consensus        78 ~l~s~~~dg~v~iwd~~   94 (314)
                      .|+.|...|.+.+|.+.
T Consensus       157 ~L~vGTn~G~v~~fkIl  173 (395)
T PF08596_consen  157 CLLVGTNSGNVLTFKIL  173 (395)
T ss_dssp             EEEEEETTSEEEEEEEE
T ss_pred             EEEEEeCCCCEEEEEEe
Confidence            68888999999999874

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.79  E-value=0.00078  Score=60.59  Aligned_cols=99  Identities=11%  Similarity=0.086  Sum_probs=65.0

Q ss_pred             ecCcCeEEEEecCCCc-eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceE
Q 021291          168 GEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (314)
Q Consensus       168 g~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~  246 (314)
                      |-.+..+..||+|-.. .+..-.        .|.........|++ -..+   |  +||+|+.+|.||+||--. .+...
T Consensus       548 Gls~n~lfriDpR~~~~k~v~~~--------~k~Y~~~~~Fs~~a-Tt~~---G--~iavgs~~G~IRLyd~~g-~~AKT  612 (794)
T PF08553_consen  548 GLSDNSLFRIDPRLSGNKLVDSQ--------SKQYSSKNNFSCFA-TTED---G--YIAVGSNKGDIRLYDRLG-KRAKT  612 (794)
T ss_pred             EECCCceEEeccCCCCCceeecc--------ccccccCCCceEEE-ecCC---c--eEEEEeCCCcEEeecccc-hhhhh
Confidence            4446889999999543 222111        22222222333333 3333   4  799999999999999542 34445


Q ss_pred             eeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecC
Q 021291          247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD  282 (314)
Q Consensus       247 ~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~  282 (314)
                      .+.+-..+|..|+.+.||++|+..+ +..+.+++..
T Consensus       613 ~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~  647 (794)
T PF08553_consen  613 ALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDTL  647 (794)
T ss_pred             cCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence            5667789999999999999986665 5567777753

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.76  E-value=0.016  Score=50.64  Aligned_cols=213  Identities=15%  Similarity=0.108  Sum_probs=114.5

Q ss_pred             CCEEEEecCCCeEEEEeCCCCeEEEEEeccCCc----ccEE--EEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCe
Q 021291           30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAA----HGIV--SVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPS  103 (314)
Q Consensus        30 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~----~~v~--~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~  103 (314)
                      +..++.++.++.|.-.|..+|+.+..+......    ..+.  .+...   ++..++.++.++.|.-+|.++++.+.   
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~---~~~~V~v~~~~g~v~AlD~~TG~~~W---  134 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW---DPRKVFFGTFDGRLVALDAETGKQVW---  134 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc---cCCeEEEecCCCeEEEEECCCCCEee---
Confidence            446777888999999999999988776543310    0011  11111   22678888889999999999998755   


Q ss_pred             eeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEe-------ecCcCeEEE
Q 021291          104 LTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA-------GEQLSEVEI  176 (314)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------g~~d~~i~v  176 (314)
                       ...........+.+...+                                .+.  +..+++.+       +..++.+.-
T Consensus       135 -~~~~~~~~~~~~~i~ssP--------------------------------~v~--~~~v~vg~~~~~~~~~~~~g~v~a  179 (488)
T cd00216         135 -KFGNNDQVPPGYTMTGAP--------------------------------TIV--KKLVIIGSSGAEFFACGVRGALRA  179 (488)
T ss_pred             -eecCCCCcCcceEecCCC--------------------------------EEE--CCEEEEeccccccccCCCCcEEEE
Confidence             222111100000000000                                011  12222211       123678999


Q ss_pred             EecCCCceeeeeccccc-CCCCC-cCC------CCCceee-eEEEecCCCCCCceEEEEeecCC----------------
Q 021291          177 WDLNTAERCTRLHQNSC-GGSPN-FSS------KGRGMCM-AVQAYLPSKSQGFVNVLAGYEDG----------------  231 (314)
Q Consensus       177 wd~~~~~~~~~~~~~~~-~~~~~-h~~------~~~~~~~-~~~~~~p~~~~g~~~l~~g~~dg----------------  231 (314)
                      +|..+++.+-.+..... ..... ...      .....+. +.. +.+.   +. .++.++.++                
T Consensus       180 lD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa-~d~~---~g-~V~vg~~~g~~~~~~~~~~~~~~~~  254 (488)
T cd00216         180 YDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPT-YDPK---TN-LVYVGTGNGSPWNWGGRRTPGDNLY  254 (488)
T ss_pred             EECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCee-EeCC---CC-EEEEECCCCCCCccCCccCCCCCCc
Confidence            99999988776653100 00000 000      0000111 111 3332   22 566676554                


Q ss_pred             --cEEEEEccCCCCceEeeec--CC--------cce-EEEEEeCCCC---eEEEecCCCcEEEEecCCCeeeEee
Q 021291          232 --SILVWDIRNPGIPLTAMKV--HL--------EPV-LCLSIDESCN---GGISGGADQKIVLYNLDHSTYVLFG  290 (314)
Q Consensus       232 --~i~vwd~~~~~~~~~~~~~--h~--------~~v-~~~~~~~~~~---~l~s~s~dg~i~iw~~~~~~~~~~~  290 (314)
                        .|.-+|..+ ++.+-..+.  |.        .++ ..+. .-++.   .++.++.+|.+...|.++++.++..
T Consensus       255 ~~~l~Ald~~t-G~~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~  327 (488)
T cd00216         255 TDSIVALDADT-GKVKWFYQTTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISAR  327 (488)
T ss_pred             eeeEEEEcCCC-CCEEEEeeCCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEe
Confidence              688899988 777666542  11        111 1111 12332   5788889999999999999998864

The alignment model contains an 8-bladed beta-propeller.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.75  E-value=0.018  Score=48.01  Aligned_cols=267  Identities=13%  Similarity=0.080  Sum_probs=127.5

Q ss_pred             EEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCC---------------cccEEEEEEcccCCC
Q 021291           12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA---------------AHGIVSVATGPSIGL   76 (314)
Q Consensus        12 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~   76 (314)
                      ..+......+....|||+|+.+|-.. ++.|.+++..+++..+.-..-..               -+.-..+.|+|  |+
T Consensus        36 ~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSp--d~  112 (353)
T PF00930_consen   36 TPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSP--DS  112 (353)
T ss_dssp             EESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-T--TS
T ss_pred             EECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECC--CC
Confidence            33333356788999999999988765 57899999887754432211100               01235788999  99


Q ss_pred             CeEEEeec-CCeEEEEeCCCCCCCC--CC-eeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCC---
Q 021291           77 NKVISQGR-DGTVKCWDIENGGLSS--NP-SLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSL---  149 (314)
Q Consensus        77 ~~l~s~~~-dg~v~iwd~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  149 (314)
                      ++|+.... +..|..+.+.......  .| ....+        +     +............++++..++.......   
T Consensus       113 ~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~--------Y-----Pk~G~~np~v~l~v~~~~~~~~~~~~~~~~~  179 (353)
T PF00930_consen  113 KYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIR--------Y-----PKAGDPNPRVSLFVVDLASGKTTELDPPNSL  179 (353)
T ss_dssp             SEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE---------------BTTS---EEEEEEEESSSTCCCEE---HHH
T ss_pred             CEEEEEEECCcCCceEEeeccCCccccCCcccccc--------c-----CCCCCcCCceEEEEEECCCCcEEEeeecccc
Confidence            99887654 3445444432111000  00 00111        0     0000000111122233333322111111   


Q ss_pred             CCCC-----ceeccCCCceEEEeecCc---CeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEec-CCCCCC
Q 021291          150 CDSK-----DDVPAEGPKYMAVAGEQL---SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYL-PSKSQG  220 (314)
Q Consensus       150 ~~~~-----~~~~~~~~~~~~~~g~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~-p~~~~g  220 (314)
                      ....     +.|.++++.+++..-..+   -.+.+.|..++.....+.....    +.   .. ...... |. ++   +
T Consensus       180 ~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~----~W---v~-~~~~~~-~~~~~---~  247 (353)
T PF00930_consen  180 NPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSD----GW---VD-VYDPPH-FLGPD---G  247 (353)
T ss_dssp             HTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESS----SS---SS-SSSEEE-E-TTT---S
T ss_pred             CCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCC----cc---ee-eecccc-cccCC---C
Confidence            0111     789899875555444332   2466778877665444332110    11   11 111222 44 54   3


Q ss_pred             ceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEE-EEEeCCCCeE-EEecCCC----cEEEEecC-CCeeeEe----
Q 021291          221 FVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLC-LSIDESCNGG-ISGGADQ----KIVLYNLD-HSTYVLF----  289 (314)
Q Consensus       221 ~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~l-~s~s~dg----~i~iw~~~-~~~~~~~----  289 (314)
                      ..++.....+|.-+||-++..+.....+....-.|+. +.+++++..| +++..++    .|..-+++ .++....    
T Consensus       248 ~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~  327 (353)
T PF00930_consen  248 NEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCED  327 (353)
T ss_dssp             SEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTS
T ss_pred             CEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCC
Confidence            3366666688876666555434555566655667765 5668776654 4555432    45555556 3333221    


Q ss_pred             -ee-eeeecCCCceeceee
Q 021291          290 -GI-GFVCDQEGNKFGTTW  306 (314)
Q Consensus       290 -~~-~~~~~~~~~~~~~~w  306 (314)
                       .. ..+++|+|..+...+
T Consensus       328 ~~~~~~~~Spdg~y~v~~~  346 (353)
T PF00930_consen  328 GDHYSASFSPDGKYYVDTY  346 (353)
T ss_dssp             STTEEEEE-TTSSEEEEEE
T ss_pred             CCceEEEECCCCCEEEEEE
Confidence             12 466778888776653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.70  E-value=0.00018  Score=57.86  Aligned_cols=89  Identities=18%  Similarity=0.250  Sum_probs=68.6

Q ss_pred             ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcE
Q 021291          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI  233 (314)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i  233 (314)
                      ++|+|..+.++. .++.+.+|+|.|+++...+..+.        .     ...+++++ |.-++   ..+|++|-.+|.|
T Consensus       199 lafSp~~~GLl~-~asl~nkiki~dlet~~~vssy~--------a-----~~~~wSC~-wDlde---~h~IYaGl~nG~V  260 (463)
T KOG1645|consen  199 LAFSPFNEGLLG-LASLGNKIKIMDLETSCVVSSYI--------A-----YNQIWSCC-WDLDE---RHVIYAGLQNGMV  260 (463)
T ss_pred             hccCccccceee-eeccCceEEEEecccceeeehee--------c-----cCCceeee-eccCC---cceeEEeccCceE
Confidence            889999887665 56778999999999988887776        2     34677776 98874   3389999999999


Q ss_pred             EEEEccCCCCceEeeecC--CcceEEEEE
Q 021291          234 LVWDIRNPGIPLTAMKVH--LEPVLCLSI  260 (314)
Q Consensus       234 ~vwd~~~~~~~~~~~~~h--~~~v~~~~~  260 (314)
                      +|||++.+..++..+.+.  ..+|..++.
T Consensus       261 lvyD~R~~~~~~~e~~a~~t~~pv~~i~~  289 (463)
T KOG1645|consen  261 LVYDMRQPEGPLMELVANVTINPVHKIAP  289 (463)
T ss_pred             EEEEccCCCchHhhhhhhhccCcceeecc
Confidence            999999877777666542  335555544

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.66  E-value=0.0047  Score=52.02  Aligned_cols=99  Identities=12%  Similarity=0.092  Sum_probs=64.9

Q ss_pred             ecCcCeEEEEecCCCce--eeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCce
Q 021291          168 GEQLSEVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL  245 (314)
Q Consensus       168 g~~d~~i~vwd~~~~~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~  245 (314)
                      |-.|..|.-||+|-...  +....        +|.-.......   ||...++ |  +|++|+.+|.|++||--. .+..
T Consensus       400 GLs~n~vfriDpRv~~~~kl~~~q--------~kqy~~k~nFs---c~aTT~s-G--~IvvgS~~GdIRLYdri~-~~AK  464 (644)
T KOG2395|consen  400 GLSDNSVFRIDPRVQGKNKLAVVQ--------SKQYSTKNNFS---CFATTES-G--YIVVGSLKGDIRLYDRIG-RRAK  464 (644)
T ss_pred             eecCCceEEecccccCcceeeeee--------ccccccccccc---eeeecCC-c--eEEEeecCCcEEeehhhh-hhhh
Confidence            54578999999984332  22222        33221111222   2444433 4  899999999999999732 4555


Q ss_pred             EeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecC
Q 021291          246 TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD  282 (314)
Q Consensus       246 ~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~  282 (314)
                      ..+.+-..+|..|..+.+|++|+..+ +..+.+-++.
T Consensus       465 TAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  465 TALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL  500 (644)
T ss_pred             hcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence            66778899999999999999876554 5567666654

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.65  E-value=0.028  Score=47.37  Aligned_cols=206  Identities=14%  Similarity=0.098  Sum_probs=128.3

Q ss_pred             eEEEEccCCC-EEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeec---CCeEEEEeCCCCC
Q 021291           22 TDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR---DGTVKCWDIENGG   97 (314)
Q Consensus        22 ~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~v~iwd~~~~~   97 (314)
                      ..++.++.+. ..++...+..|.+.|..+.+.......-.   ....++++|  +++.+..+..   ++++.+.|..+++
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~---~P~~~~~~~--~~~~vYV~n~~~~~~~vsvid~~t~~  151 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL---GPVGLAVDP--DGKYVYVANAGNGNNTVSVIDAATNK  151 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc---CCceEEECC--CCCEEEEEecccCCceEEEEeCCCCe
Confidence            4677888776 44455556889999988777766654332   257899999  8877776655   6888888888776


Q ss_pred             CCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEE
Q 021291           98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIW  177 (314)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vw  177 (314)
                      ...    ........                                       ..+++.|+|+.++++. ..++.|.+.
T Consensus       152 ~~~----~~~vG~~P---------------------------------------~~~a~~p~g~~vyv~~-~~~~~v~vi  187 (381)
T COG3391         152 VTA----TIPVGNTP---------------------------------------TGVAVDPDGNKVYVTN-SDDNTVSVI  187 (381)
T ss_pred             EEE----EEecCCCc---------------------------------------ceEEECCCCCeEEEEe-cCCCeEEEE
Confidence            533    11111100                                       0066889998777654 557999999


Q ss_pred             ecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecC--CcEEEEEccCCCCceEe-eecCCcc
Q 021291          178 DLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED--GSILVWDIRNPGIPLTA-MKVHLEP  254 (314)
Q Consensus       178 d~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~d--g~i~vwd~~~~~~~~~~-~~~h~~~  254 (314)
                      |........ -..       +-..........+. ++|+   |....++-..+  +.+...|..+ +..... ...-...
T Consensus       188 ~~~~~~v~~-~~~-------~~~~~~~~~P~~i~-v~~~---g~~~yV~~~~~~~~~v~~id~~~-~~v~~~~~~~~~~~  254 (381)
T COG3391         188 DTSGNSVVR-GSV-------GSLVGVGTGPAGIA-VDPD---GNRVYVANDGSGSNNVLKIDTAT-GNVTATDLPVGSGA  254 (381)
T ss_pred             eCCCcceec-ccc-------ccccccCCCCceEE-ECCC---CCEEEEEeccCCCceEEEEeCCC-ceEEEeccccccCC
Confidence            977665543 110       00011122334444 8887   44233333333  6888888886 444433 2211114


Q ss_pred             eEEEEEeCCCCeEEEe-cCCCcEEEEecCCCeeeEe
Q 021291          255 VLCLSIDESCNGGISG-GADQKIVLYNLDHSTYVLF  289 (314)
Q Consensus       255 v~~~~~~~~~~~l~s~-s~dg~i~iw~~~~~~~~~~  289 (314)
                      ...+..+|+|.++... +..+.+.+-|..+......
T Consensus       255 ~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~  290 (381)
T COG3391         255 PRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKT  290 (381)
T ss_pred             CCceeECCCCCEEEEEecCCCeEEEEeCCCCceeee
Confidence            5678889999988766 4457899999888776654

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.61  E-value=0.0024  Score=55.33  Aligned_cols=124  Identities=15%  Similarity=0.225  Sum_probs=79.1

Q ss_pred             CCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCC
Q 021291           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG   96 (314)
Q Consensus        17 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~   96 (314)
                      |...|.=-+++..+++++.|+.-|.+.+|+-..++.. .++.......+..+..++  +..+++.|+..|.|.++-++..
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~-~~~~~~~~~~~~~~~vs~--~e~lvAagt~~g~V~v~ql~~~  108 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR-KLKNEGATGITCVRSVSS--VEYLVAAGTASGRVSVFQLNKE  108 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhh-cccccCccceEEEEEecc--hhHhhhhhcCCceEEeehhhcc
Confidence            3344544556667889999999999999997655433 332211113356667777  7678888899999999988773


Q ss_pred             CCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEE
Q 021291           97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI  176 (314)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v  176 (314)
                       ......+.-+.+..+.+.+..                                   ++|++++..++  +|...|+|..
T Consensus       109 -~p~~~~~~t~~d~~~~~rVTa-----------------------------------l~Ws~~~~k~y--sGD~~Gkv~~  150 (726)
T KOG3621|consen  109 -LPRDLDYVTPCDKSHKCRVTA-----------------------------------LEWSKNGMKLY--SGDSQGKVVL  150 (726)
T ss_pred             -CCCcceeeccccccCCceEEE-----------------------------------EEecccccEEe--ecCCCceEEE
Confidence             222112211111111111111                                   67999998877  7888899988


Q ss_pred             EecCC
Q 021291          177 WDLNT  181 (314)
Q Consensus       177 wd~~~  181 (314)
                      -.+.+
T Consensus       151 ~~L~s  155 (726)
T KOG3621|consen  151 TELDS  155 (726)
T ss_pred             EEech
Confidence            87766

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.56  E-value=0.00031  Score=38.81  Aligned_cols=34  Identities=18%  Similarity=0.332  Sum_probs=29.9

Q ss_pred             CCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeE
Q 021291           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT   52 (314)
Q Consensus        18 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~   52 (314)
                      ...|.+++|+|...+||.|+.||.|.|+.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            457999999999999999999999999998 4543

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.51  E-value=0.058  Score=47.46  Aligned_cols=69  Identities=23%  Similarity=0.203  Sum_probs=43.0

Q ss_pred             CEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEee------cCCeEEEEeCCCCCCCC
Q 021291           31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG------RDGTVKCWDIENGGLSS  100 (314)
Q Consensus        31 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~------~dg~v~iwd~~~~~~~~  100 (314)
                      ..++.++.|+.|.-.|.++|+.+.......... -..+.-+|...+..++.+.      .+|.|.-+|.++++.+.
T Consensus       121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~-~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW  195 (527)
T TIGR03075       121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKA-GYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVW  195 (527)
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEeecccccccc-cccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeE
Confidence            467778899999999999999987765321100 0111111211123455443      26899999999998765

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.49  E-value=0.012  Score=39.09  Aligned_cols=96  Identities=16%  Similarity=0.205  Sum_probs=62.2

Q ss_pred             eccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEE
Q 021291          156 VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV  235 (314)
Q Consensus       156 ~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~v  235 (314)
                      |.-+|+.-|+ .|+.|..|++|+-  .+.+..+..             ...++++....+    +  .++.+..+|+|-+
T Consensus        10 ~d~dg~~eLl-vGs~D~~IRvf~~--~e~~~Ei~e-------------~~~v~~L~~~~~----~--~F~Y~l~NGTVGv   67 (111)
T PF14783_consen   10 FDGDGENELL-VGSDDFEIRVFKG--DEIVAEITE-------------TDKVTSLCSLGG----G--RFAYALANGTVGV   67 (111)
T ss_pred             cCCCCcceEE-EecCCcEEEEEeC--CcEEEEEec-------------ccceEEEEEcCC----C--EEEEEecCCEEEE
Confidence            4455656665 5888999999974  356666652             345666652332    2  7999999999999


Q ss_pred             EEccCCCCceEeeecCCcceEEEEE-eC--CC-CeEEEecCCCcEE
Q 021291          236 WDIRNPGIPLTAMKVHLEPVLCLSI-DE--SC-NGGISGGADQKIV  277 (314)
Q Consensus       236 wd~~~~~~~~~~~~~h~~~v~~~~~-~~--~~-~~l~s~s~dg~i~  277 (314)
                      |+-..   .+...+. ...++++.+ +.  +| .-|++|-.+|.|-
T Consensus        68 Y~~~~---RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   68 YDRSQ---RLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             EeCcc---eeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            98642   3444443 333666655 33  33 2488888888874

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.45  E-value=0.00064  Score=50.75  Aligned_cols=103  Identities=17%  Similarity=0.095  Sum_probs=68.8

Q ss_pred             eecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceE
Q 021291          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (314)
Q Consensus       167 ~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~  246 (314)
                      +|+.+|.|++|.......              |........-.+.+.-|...++. +..++..||.|+.|++.- .+.+.
T Consensus        75 vG~~dg~v~~~n~n~~g~--------------~~d~~~s~~e~i~~~Ip~~~~~~-~~c~~~~dg~ir~~n~~p-~k~~g  138 (238)
T KOG2444|consen   75 VGTSDGAVYVFNWNLEGA--------------HSDRVCSGEESIDLGIPNGRDSS-LGCVGAQDGRIRACNIKP-NKVLG  138 (238)
T ss_pred             eecccceEEEecCCccch--------------HHHhhhcccccceeccccccccc-eeEEeccCCceeeecccc-Cceee
Confidence            466789999998862211              11111111111112334322233 889999999999999986 77777


Q ss_pred             eeecCC-cceEEEEEeCCCCeEEEe--cCCCcEEEEecCCCe
Q 021291          247 AMKVHL-EPVLCLSIDESCNGGISG--GADQKIVLYNLDHST  285 (314)
Q Consensus       247 ~~~~h~-~~v~~~~~~~~~~~l~s~--s~dg~i~iw~~~~~~  285 (314)
                      ....|. .++..+.....+.+|+.+  |.|..++.|+++.-.
T Consensus       139 ~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~  180 (238)
T KOG2444|consen  139 YVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIK  180 (238)
T ss_pred             eeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhhh
Confidence            777777 677777777777888888  889999999887543

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.37  E-value=0.038  Score=51.42  Aligned_cols=161  Identities=11%  Similarity=0.004  Sum_probs=83.4

Q ss_pred             CCceeEEEEccCCCEEEEecCCCeEEEEeCC----C-------------------CeEEEEEeccCC-------------
Q 021291           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTV----Q-------------------HRTVSSSWVHSA-------------   61 (314)
Q Consensus        18 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~----~-------------------~~~~~~~~~~~~-------------   61 (314)
                      ...|.+++|+||+..++..+.++++.+-.-.    .                   |+.-..+++..+             
T Consensus       109 d~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~  188 (1265)
T KOG1920|consen  109 DNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKA  188 (1265)
T ss_pred             cCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhccccccccccc
Confidence            4689999999999999999888888765421    0                   111112221110             


Q ss_pred             ------cccEEEEEEcccCCCCeEEEee----cC-CeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCC
Q 021291           62 ------AHGIVSVATGPSIGLNKVISQG----RD-GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN  130 (314)
Q Consensus        62 ------~~~v~~~~~~~~~~~~~l~s~~----~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (314)
                            .+.=++|+|--  ||++|++..    .+ +.|++||-+ +.+..  .-.-.....+...+.+.+.-.+..-...
T Consensus       189 ~~~~~~~~~~~~IsWRg--Dg~~fAVs~~~~~~~~RkirV~drE-g~Lns--~se~~~~l~~~LsWkPsgs~iA~iq~~~  263 (1265)
T KOG1920|consen  189 LEQIEQDDHKTSISWRG--DGEYFAVSFVESETGTRKIRVYDRE-GALNS--TSEPVEGLQHSLSWKPSGSLIAAIQCKT  263 (1265)
T ss_pred             ccchhhccCCceEEEcc--CCcEEEEEEEeccCCceeEEEeccc-chhhc--ccCcccccccceeecCCCCeEeeeeecC
Confidence                  01124588988  999998732    23 789999988 43321  1111112222233333222222222222


Q ss_pred             CCcceeeccCCceeeec----CCC----CCCceeccCCCceEEEeecCcCe-EEEEecCCCc
Q 021291          131 EPKDCYEREVGETVDTD----SLC----DSKDDVPAEGPKYMAVAGEQLSE-VEIWDLNTAE  183 (314)
Q Consensus       131 ~~~~~~~~~~~~~~~~~----~~~----~~~~~~~~~~~~~~~~~g~~d~~-i~vwd~~~~~  183 (314)
                      +...+.-++.+......    .+.    -..++|+.++.-+.+.+....+. |++|-+.+-.
T Consensus       264 sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  264 SDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             CCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence            22233333332211111    111    11189999987655434333444 9999887643

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.36  E-value=0.073  Score=45.29  Aligned_cols=50  Identities=22%  Similarity=0.315  Sum_probs=39.2

Q ss_pred             eEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCC
Q 021291           41 ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG   96 (314)
Q Consensus        41 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~   96 (314)
                      .|.||+. .|+.+.++.-..  +.|.++.|+.  + ..|+....||++++||+...
T Consensus        62 ~I~iys~-sG~ll~~i~w~~--~~iv~~~wt~--~-e~LvvV~~dG~v~vy~~~G~  111 (410)
T PF04841_consen   62 SIQIYSS-SGKLLSSIPWDS--GRIVGMGWTD--D-EELVVVQSDGTVRVYDLFGE  111 (410)
T ss_pred             EEEEECC-CCCEeEEEEECC--CCEEEEEECC--C-CeEEEEEcCCEEEEEeCCCc
Confidence            5899985 477777776555  4599999988  5 67778889999999998643

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.34  E-value=0.081  Score=45.25  Aligned_cols=201  Identities=15%  Similarity=0.130  Sum_probs=104.3

Q ss_pred             eeEEEEccCCCEEEEe-cCC----CeEEEEeCCCCeEEEEE-eccCCcccEEEEEEcccCCCCeEEEeecCC--------
Q 021291           21 VTDVCFHQTKPILFAG-TTG----GELRIWDTVQHRTVSSS-WVHSAAHGIVSVATGPSIGLNKVISQGRDG--------   86 (314)
Q Consensus        21 v~~~~~~~~~~~l~s~-~~d----g~v~iwd~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg--------   86 (314)
                      +...+++|+|++||-+ +..    ..++++|+++++.+... ....    -..+.|.+  +++.|+....+.        
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~----~~~~~W~~--d~~~~~y~~~~~~~~~~~~~  199 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK----FSSVSWSD--DGKGFFYTRFDEDQRTSDSG  199 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE----SEEEEECT--TSSEEEEEECSTTTSS-CCG
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc----cceEEEeC--CCCEEEEEEeCcccccccCC
Confidence            3467899999988754 333    46999999999776532 2221    23499999  877766554332        


Q ss_pred             ---eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCce
Q 021291           87 ---TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY  163 (314)
Q Consensus        87 ---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (314)
                         .|..|++.+.......++...........                                      +..+++++.+
T Consensus       200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~--------------------------------------~~~s~d~~~l  241 (414)
T PF02897_consen  200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVS--------------------------------------VSRSKDGRYL  241 (414)
T ss_dssp             CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEE--------------------------------------EEE-TTSSEE
T ss_pred             CCcEEEEEECCCChHhCeeEEeecCCCcEEEE--------------------------------------EEecCcccEE
Confidence               37777776654321112222221110000                                      4477888887


Q ss_pred             EEEeecC-c-CeEEEEecCCC----ceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEe--ecCCcEEE
Q 021291          164 MAVAGEQ-L-SEVEIWDLNTA----ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG--YEDGSILV  235 (314)
Q Consensus       164 ~~~~g~~-d-~~i~vwd~~~~----~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g--~~dg~i~v  235 (314)
                      ++.+.+. + ..+.+.|+..+    .....+..        .   ..+....+. .. .   +.+++.+.  ..++.|.-
T Consensus       242 ~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~--------~---~~~~~~~v~-~~-~---~~~yi~Tn~~a~~~~l~~  305 (414)
T PF02897_consen  242 FISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP--------R---EDGVEYYVD-HH-G---DRLYILTNDDAPNGRLVA  305 (414)
T ss_dssp             EEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE--------S---SSS-EEEEE-EE-T---TEEEEEE-TT-TT-EEEE
T ss_pred             EEEEEccccCCeEEEEeccccCCCcCCcEEEeC--------C---CCceEEEEE-cc-C---CEEEEeeCCCCCCcEEEE
Confidence            7655443 2 46888888874    22222221        1   122222222 22 1   33344443  23466777


Q ss_pred             EEccCCCC--ceEeeecCCc--ceEEEEEeCCCCeEEEecCCC--cEEEEecC
Q 021291          236 WDIRNPGI--PLTAMKVHLE--PVLCLSIDESCNGGISGGADQ--KIVLYNLD  282 (314)
Q Consensus       236 wd~~~~~~--~~~~~~~h~~--~v~~~~~~~~~~~l~s~s~dg--~i~iw~~~  282 (314)
                      .++..+..  ....+-.+..  .+..+....+. +++..-.++  .|+++++.
T Consensus       306 ~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~-Lvl~~~~~~~~~l~v~~~~  357 (414)
T PF02897_consen  306 VDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDY-LVLSYRENGSSRLRVYDLD  357 (414)
T ss_dssp             EETTSTSGGGEEEEEE--SSSEEEEEEEEETTE-EEEEEEETTEEEEEEEETT
T ss_pred             ecccccccccceeEEcCCCCceeEEEEEEECCE-EEEEEEECCccEEEEEECC
Confidence            78776332  1224555555  45556555443 344444554  58888988

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.34  E-value=0.097  Score=46.13  Aligned_cols=66  Identities=14%  Similarity=0.099  Sum_probs=47.1

Q ss_pred             CCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEE---E-------EEEcccCCCCeEEEeecCCeEEEEeCCCCCCC
Q 021291           30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIV---S-------VATGPSIGLNKVISQGRDGTVKCWDIENGGLS   99 (314)
Q Consensus        30 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~---~-------~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~   99 (314)
                      +..|+.++.++.|.-.|..+|+.+..+..... ..+.   +       +++.    +..++.++.|+.|.-.|.++++.+
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~-~~~~~~~~~~~~~rg~av~----~~~v~v~t~dg~l~ALDa~TGk~~  143 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLP-DDVIPVMCCDVVNRGVALY----DGKVFFGTLDARLVALDAKTGKVV  143 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCC-cccccccccccccccceEE----CCEEEEEcCCCEEEEEECCCCCEE
Confidence            45777788889999999999999887754221 1111   1       2222    256778888999999999999876


Q ss_pred             C
Q 021291          100 S  100 (314)
Q Consensus       100 ~  100 (314)
                      .
T Consensus       144 W  144 (527)
T TIGR03075       144 W  144 (527)
T ss_pred             e
Confidence            5

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.32  E-value=0.016  Score=51.78  Aligned_cols=117  Identities=14%  Similarity=0.238  Sum_probs=65.5

Q ss_pred             cCCCceEEEeecCcC----eEEEEecCCC------ceeeeecccccCCCCCcCCCC-CceeeeEEEecCCCCCCceEEEE
Q 021291          158 AEGPKYMAVAGEQLS----EVEIWDLNTA------ERCTRLHQNSCGGSPNFSSKG-RGMCMAVQAYLPSKSQGFVNVLA  226 (314)
Q Consensus       158 ~~~~~~~~~~g~~d~----~i~vwd~~~~------~~~~~~~~~~~~~~~~h~~~~-~~~~~~~~~~~p~~~~g~~~l~~  226 (314)
                      -+++.++++.|..++    .|++||+...      .++.....      ..|..+. ..++.+++ .+.+   -. .+|+
T Consensus        74 ~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri------~~~~np~~~~p~s~l~-Vs~~---l~-~Iv~  142 (933)
T KOG2114|consen   74 LNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRI------FTIKNPTNPSPASSLA-VSED---LK-TIVC  142 (933)
T ss_pred             ccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeee------eccCCCCCCCcceEEE-EEcc---cc-EEEE
Confidence            344455655555444    6999998743      12211110      0333332 23344444 6655   22 8999


Q ss_pred             eecCCcEEEEEcc---CCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCe
Q 021291          227 GYEDGSILVWDIR---NPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST  285 (314)
Q Consensus       227 g~~dg~i~vwd~~---~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~  285 (314)
                      |..||.|..+.-+   ..+....-...-.++|+.+++..++..++-+..-..|.+|.+....
T Consensus       143 Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~  204 (933)
T KOG2114|consen  143 GFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT  204 (933)
T ss_pred             EecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCC
Confidence            9999999998643   2122222222346799999997666652222234568888887444

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.32  E-value=0.017  Score=44.30  Aligned_cols=114  Identities=16%  Similarity=0.074  Sum_probs=80.5

Q ss_pred             ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcE
Q 021291          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI  233 (314)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i  233 (314)
                      +...++.+.+++ .|+..+.+.--|..+++..-.-..       +    .+....++  .-     |. +++.|+..|.+
T Consensus        16 LVV~~dskT~v~-igSHs~~~~avd~~sG~~~We~il-------g----~RiE~sa~--vv-----gd-fVV~GCy~g~l   75 (354)
T KOG4649|consen   16 LVVCNDSKTLVV-IGSHSGIVIAVDPQSGNLIWEAIL-------G----VRIECSAI--VV-----GD-FVVLGCYSGGL   75 (354)
T ss_pred             EEEecCCceEEE-EecCCceEEEecCCCCcEEeehhh-------C----ceeeeeeE--EE-----CC-EEEEEEccCcE
Confidence            445566665554 688889999999999987654331       1    11111111  22     33 79999999999


Q ss_pred             EEEEccCCCCceEeeecCCcceE-EEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291          234 LVWDIRNPGIPLTAMKVHLEPVL-CLSIDESCNGGISGGADQKIVLYNLDHSTYVLF  289 (314)
Q Consensus       234 ~vwd~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~  289 (314)
                      ++.+.++ +.....+..- +.|. ....++++..+..|+.|+..+.-|..+...++.
T Consensus        76 Yfl~~~t-Gs~~w~f~~~-~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyk  130 (354)
T KOG4649|consen   76 YFLCVKT-GSQIWNFVIL-ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYK  130 (354)
T ss_pred             EEEEecc-hhheeeeeeh-hhhccceEEcCCCceEEEecCCCcEEEecccccceEEe
Confidence            9999998 7666666543 3333 334578888999999999999999999998886

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.29  E-value=0.054  Score=42.28  Aligned_cols=186  Identities=11%  Similarity=0.089  Sum_probs=103.8

Q ss_pred             ceeEEEEccCCCEEEEecCCC--eEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCC
Q 021291           20 SVTDVCFHQTKPILFAGTTGG--ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG   97 (314)
Q Consensus        20 ~v~~~~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~   97 (314)
                      -...+.|..+|.++-+.+.-|  .|+.+|+.+++.+........ -.-..++...  + ....-.=.++...+||..+.+
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~-~FgEGit~~~--d-~l~qLTWk~~~~f~yd~~tl~  121 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR-YFGEGITILG--D-KLYQLTWKEGTGFVYDPNTLK  121 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT---EEEEEEET--T-EEEEEESSSSEEEEEETTTTE
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc-ccceeEEEEC--C-EEEEEEecCCeEEEEccccce
Confidence            345688877888888877766  799999999988776654431 1234455544  3 444455568899999998765


Q ss_pred             CCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEE
Q 021291           98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIW  177 (314)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vw  177 (314)
                      .+.  .+......-                                           -+..+++.++++-|+  ..|+++
T Consensus       122 ~~~--~~~y~~EGW-------------------------------------------GLt~dg~~Li~SDGS--~~L~~~  154 (264)
T PF05096_consen  122 KIG--TFPYPGEGW-------------------------------------------GLTSDGKRLIMSDGS--SRLYFL  154 (264)
T ss_dssp             EEE--EEE-SSS---------------------------------------------EEEECSSCEEEE-SS--SEEEEE
T ss_pred             EEE--EEecCCcce-------------------------------------------EEEcCCCEEEEECCc--cceEEE
Confidence            433  222221111                                           133667778775555  689999


Q ss_pred             ecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeec-------
Q 021291          178 DLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV-------  250 (314)
Q Consensus       178 d~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~-------  250 (314)
                      |..+.+....+....      . ...-..+.-+- |- +   |. +.|-.-....|...|..+ ++++..+..       
T Consensus       155 dP~~f~~~~~i~V~~------~-g~pv~~LNELE-~i-~---G~-IyANVW~td~I~~Idp~t-G~V~~~iDls~L~~~~  220 (264)
T PF05096_consen  155 DPETFKEVRTIQVTD------N-GRPVSNLNELE-YI-N---GK-IYANVWQTDRIVRIDPET-GKVVGWIDLSGLRPEV  220 (264)
T ss_dssp             -TTT-SEEEEEE-EE------T-TEE---EEEEE-EE-T---TE-EEEEETTSSEEEEEETTT--BEEEEEE-HHHHHHH
T ss_pred             CCcccceEEEEEEEE------C-CEECCCcEeEE-EE-c---CE-EEEEeCCCCeEEEEeCCC-CeEEEEEEhhHhhhcc
Confidence            999887776665211      0 00111223333 33 1   32 444444455566667776 665554421       


Q ss_pred             --------CCcceEEEEEeCCCCe-EEEe
Q 021291          251 --------HLEPVLCLSIDESCNG-GISG  270 (314)
Q Consensus       251 --------h~~~v~~~~~~~~~~~-l~s~  270 (314)
                              -.+-.+.++++|.... ++||
T Consensus       221 ~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  221 GRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             TSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             cccccccccCCeeEeEeEeCCCCEEEEEe
Confidence                    1345789999876654 4665

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PHA02713 hypothetical protein; Provisional

Probab=97.23  E-value=0.036  Score=49.18  Aligned_cols=66  Identities=6%  Similarity=-0.097  Sum_probs=37.9

Q ss_pred             CceEEEEeecC------CcEEEEEccC--CCCceEeeecCCcceEEEEEeCCCCeEEEecCCC--cEEEEecCCCeeeE
Q 021291          220 GFVNVLAGYED------GSILVWDIRN--PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQ--KIVLYNLDHSTYVL  288 (314)
Q Consensus       220 g~~~l~~g~~d------g~i~vwd~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg--~i~iw~~~~~~~~~  288 (314)
                      |+ +.+.|+.+      ..+..||..+  ....+..+.........+.+  +++..++|+.|+  .+..||..+.+-..
T Consensus       464 ~~-IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~  539 (557)
T PHA02713        464 DD-IYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWNH  539 (557)
T ss_pred             CE-EEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccccccc
Confidence            44 55556543      2467888875  22333334332222222332  556788999888  77888888776543

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.22  E-value=0.1  Score=44.02  Aligned_cols=181  Identities=14%  Similarity=0.125  Sum_probs=111.0

Q ss_pred             ceeEEEEccCCCEEEEecC---CCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEee-cCCeEEEEeCCC
Q 021291           20 SVTDVCFHQTKPILFAGTT---GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG-RDGTVKCWDIEN   95 (314)
Q Consensus        20 ~v~~~~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~v~iwd~~~   95 (314)
                      .-..++++++++.+..+..   ++++.+.|..+.+.......-.  .+ ..+++.|  +++.++.+. .++.|.+.|...
T Consensus       117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~--~P-~~~a~~p--~g~~vyv~~~~~~~v~vi~~~~  191 (381)
T COG3391         117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN--TP-TGVAVDP--DGNKVYVTNSDDNTVSVIDTSG  191 (381)
T ss_pred             CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC--Cc-ceEEECC--CCCeEEEEecCCCeEEEEeCCC
Confidence            4457889998877665544   7899999999888887754333  33 8999999  988766555 788999999776


Q ss_pred             CCCCC-CCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeec-CcCe
Q 021291           96 GGLSS-NPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE-QLSE  173 (314)
Q Consensus        96 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~d~~  173 (314)
                      ..... .+.......                                       .....+.++++|.++.++-.. .++.
T Consensus       192 ~~v~~~~~~~~~~~~---------------------------------------~~P~~i~v~~~g~~~yV~~~~~~~~~  232 (381)
T COG3391         192 NSVVRGSVGSLVGVG---------------------------------------TGPAGIAVDPDGNRVYVANDGSGSNN  232 (381)
T ss_pred             cceeccccccccccC---------------------------------------CCCceEEECCCCCEEEEEeccCCCce
Confidence            54321 000000000                                       011116688999877664333 2368


Q ss_pred             EEEEecCCCceeee-ecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEe-ecCCcEEEEEccCCCCceEeeecC
Q 021291          174 VEIWDLNTAERCTR-LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG-YEDGSILVWDIRNPGIPLTAMKVH  251 (314)
Q Consensus       174 i~vwd~~~~~~~~~-~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g-~~dg~i~vwd~~~~~~~~~~~~~h  251 (314)
                      +...|..++..... ...        -   .. ....+. ..|+   |. .+.+. ...+.+.+-|..+ ..........
T Consensus       233 v~~id~~~~~v~~~~~~~--------~---~~-~~~~v~-~~p~---g~-~~yv~~~~~~~V~vid~~~-~~v~~~~~~~  294 (381)
T COG3391         233 VLKIDTATGNVTATDLPV--------G---SG-APRGVA-VDPA---GK-AAYVANSQGGTVSVIDGAT-DRVVKTGPTG  294 (381)
T ss_pred             EEEEeCCCceEEEecccc--------c---cC-CCCcee-ECCC---CC-EEEEEecCCCeEEEEeCCC-Cceeeeeccc
Confidence            99999988776654 221        0   11 233344 8887   55 44444 4558899999887 5555544432


Q ss_pred             Cc---ceEEEEEeC
Q 021291          252 LE---PVLCLSIDE  262 (314)
Q Consensus       252 ~~---~v~~~~~~~  262 (314)
                      ..   .+..+++.+
T Consensus       295 ~~~~~~~~~~~~~~  308 (381)
T COG3391         295 NEALGEPVSIAISP  308 (381)
T ss_pred             ccccccceecccee
Confidence            22   345555543

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.21  E-value=0.092  Score=43.39  Aligned_cols=259  Identities=15%  Similarity=0.081  Sum_probs=108.5

Q ss_pred             CCCCCceEEecCCCCceeE-----EEEccCCCEEEE-ecCCC--eEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCC
Q 021291            5 PPPPDPVAVLRGHRASVTD-----VCFHQTKPILFA-GTTGG--ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGL   76 (314)
Q Consensus         5 ~~~~~~~~~l~~h~~~v~~-----~~~~~~~~~l~s-~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   76 (314)
                      |..+..+..|..+......     =+|.+||+.|+- +..||  .+.+.|+.+++..+--.+...  ......++|  +.
T Consensus        17 ~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~--~~~g~~~s~--~~   92 (386)
T PF14583_consen   17 PDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGD--NTFGGFLSP--DD   92 (386)
T ss_dssp             TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B---TTT-EE-T--TS
T ss_pred             CCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCC--CccceEEec--CC
Confidence            3444555555543332222     356778866554 44444  677788888877665544322  133556667  66


Q ss_pred             CeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCcee
Q 021291           77 NKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDV  156 (314)
Q Consensus        77 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (314)
                      +.++-...+..|+--|+++.+...  ++.+...-.....+.+....        ....-..+...     ....-  -.+
T Consensus        93 ~~~~Yv~~~~~l~~vdL~T~e~~~--vy~~p~~~~g~gt~v~n~d~--------t~~~g~e~~~~-----d~~~l--~~~  155 (386)
T PF14583_consen   93 RALYYVKNGRSLRRVDLDTLEERV--VYEVPDDWKGYGTWVANSDC--------TKLVGIEISRE-----DWKPL--TKW  155 (386)
T ss_dssp             SEEEEEETTTEEEEEETTT--EEE--EEE--TTEEEEEEEEE-TTS--------SEEEEEEEEGG-----G-------SH
T ss_pred             CeEEEEECCCeEEEEECCcCcEEE--EEECCcccccccceeeCCCc--------cEEEEEEEeeh-----hccCc--ccc
Confidence            777666666789999999876422  55554443322222111100        00000000000     00000  001


Q ss_pred             ccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeec---CCc-
Q 021291          157 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE---DGS-  232 (314)
Q Consensus       157 ~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~---dg~-  232 (314)
                      ....+.+.   ......|.-.|+++++....+..             ....--+. |+|..+.   +|+-|.+   +.. 
T Consensus       156 ~~f~e~~~---a~p~~~i~~idl~tG~~~~v~~~-------------~~wlgH~~-fsP~dp~---li~fCHEGpw~~Vd  215 (386)
T PF14583_consen  156 KGFREFYE---ARPHCRIFTIDLKTGERKVVFED-------------TDWLGHVQ-FSPTDPT---LIMFCHEGPWDLVD  215 (386)
T ss_dssp             HHHHHHHH---C---EEEEEEETTT--EEEEEEE-------------SS-EEEEE-EETTEEE---EEEEEE-S-TTTSS
T ss_pred             HHHHHHHh---hCCCceEEEEECCCCceeEEEec-------------CccccCcc-cCCCCCC---EEEEeccCCcceec
Confidence            00011111   11235677888898887666652             33555666 9998542   5555433   222 


Q ss_pred             EEEEEccCCCCceEeeecCCc--ceEEEEEeCCCCeEEE-----ecCCCcEEEEecCCCeeeEe-----eeeeeecCCCc
Q 021291          233 ILVWDIRNPGIPLTAMKVHLE--PVLCLSIDESCNGGIS-----GGADQKIVLYNLDHSTYVLF-----GIGFVCDQEGN  300 (314)
Q Consensus       233 i~vwd~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~l~s-----~s~dg~i~iw~~~~~~~~~~-----~~~~~~~~~~~  300 (314)
                      -+||-++..+.....+..|..  .+..=-|.++|..|.-     ++.+..|.-+|+.+++....     ..-+..+++|.
T Consensus       216 ~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p~~~H~~ss~Dg~  295 (386)
T PF14583_consen  216 QRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMPWCSHFMSSPDGK  295 (386)
T ss_dssp             -SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-SEEEEEE-TTSS
T ss_pred             eEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCCceeeeEEcCCCC
Confidence            377877665555555544432  3334456888887643     23355677788887764332     23344557776


Q ss_pred             eece
Q 021291          301 KFGT  304 (314)
Q Consensus       301 ~~~~  304 (314)
                      .|+.
T Consensus       296 L~vG  299 (386)
T PF14583_consen  296 LFVG  299 (386)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            6643

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.17  E-value=0.077  Score=41.72  Aligned_cols=186  Identities=12%  Similarity=0.117  Sum_probs=105.9

Q ss_pred             CCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCC
Q 021291           16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN   95 (314)
Q Consensus        16 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~   95 (314)
                      |-...|.++.|+|+.+.|++......-.|+=..+|+.+.++....- .--..|.|..  ++.+.++--.++.+.++.+..
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~-~DpE~Ieyig--~n~fvi~dER~~~l~~~~vd~  159 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF-SDPETIEYIG--GNQFVIVDERDRALYLFTVDA  159 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc-CChhHeEEec--CCEEEEEehhcceEEEEEEcC
Confidence            4455699999999999898888888877887788999988754321 1245677777  767777777788888887765


Q ss_pred             CCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEE
Q 021291           96 GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVE  175 (314)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~  175 (314)
                      ....    ......     .+.....                       ...-.+..+++|.|.+..++++ -. -.-+.
T Consensus       160 ~t~~----~~~~~~-----~i~L~~~-----------------------~k~N~GfEGlA~d~~~~~l~~a-KE-r~P~~  205 (316)
T COG3204         160 DTTV----ISAKVQ-----KIPLGTT-----------------------NKKNKGFEGLAWDPVDHRLFVA-KE-RNPIG  205 (316)
T ss_pred             CccE----Eeccce-----EEecccc-----------------------CCCCcCceeeecCCCCceEEEE-Ec-cCCcE
Confidence            5321    111111     0110000                       0001122228899998888763 33 34466


Q ss_pred             EEecCCCceeeeecccccCCCCCcCCCC---CceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeee
Q 021291          176 IWDLNTAERCTRLHQNSCGGSPNFSSKG---RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK  249 (314)
Q Consensus       176 vwd~~~~~~~~~~~~~~~~~~~~h~~~~---~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~  249 (314)
                      ||..............     ..+....   -.-+.++. |++.  .+. +++-+.+++.+.-.|..  +.++..+.
T Consensus       206 I~~~~~~~~~l~~~~~-----~~~~~~~~~f~~DvSgl~-~~~~--~~~-LLVLS~ESr~l~Evd~~--G~~~~~ls  271 (316)
T COG3204         206 IFEVTQSPSSLSVHAS-----LDPTADRDLFVLDVSGLE-FNAI--TNS-LLVLSDESRRLLEVDLS--GEVIELLS  271 (316)
T ss_pred             EEEEecCCcccccccc-----cCcccccceEeeccccce-ecCC--CCc-EEEEecCCceEEEEecC--CCeeeeEE
Confidence            6655432211111100     0111100   01233444 6654  233 78888888888888877  55555544

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.12  E-value=0.1  Score=44.65  Aligned_cols=57  Identities=12%  Similarity=0.052  Sum_probs=37.2

Q ss_pred             EEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCC
Q 021291          223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS  284 (314)
Q Consensus       223 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~  284 (314)
                      +|...+ ++.|.+||..+ ++.+..+...  +|..+.|++++.+++-.+.+ .+.|++.+..
T Consensus       119 LL~~~~-~~~i~~yDw~~-~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~  175 (443)
T PF04053_consen  119 LLGVKS-SDFICFYDWET-GKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLE  175 (443)
T ss_dssp             SEEEEE-TTEEEEE-TTT---EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HH
T ss_pred             EEEEEC-CCCEEEEEhhH-cceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecch
Confidence            455544 44899999998 8888888743  48999999999999888766 6888776544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.11  E-value=0.0017  Score=35.83  Aligned_cols=36  Identities=19%  Similarity=0.261  Sum_probs=31.1

Q ss_pred             CcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeE
Q 021291          252 LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVL  288 (314)
Q Consensus       252 ~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~  288 (314)
                      ...|..++|+|...+||.+..||.|.++.+ ++++++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qriw   46 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRIW   46 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCcc
Confidence            457999999999999999999999999999 555543

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.08  E-value=0.14  Score=42.90  Aligned_cols=222  Identities=12%  Similarity=0.020  Sum_probs=93.8

Q ss_pred             CCCCCCceEEecC---CC----CceeEEEEccCCCEEEEec------CCCeEEEEeCCCCeEEEEEeccCC-cccEEEEE
Q 021291            4 RPPPPDPVAVLRG---HR----ASVTDVCFHQTKPILFAGT------TGGELRIWDTVQHRTVSSSWVHSA-AHGIVSVA   69 (314)
Q Consensus         4 ~~~~~~~~~~l~~---h~----~~v~~~~~~~~~~~l~s~~------~dg~v~iwd~~~~~~~~~~~~~~~-~~~v~~~~   69 (314)
                      .|..++..++++.   +.    ..-..+-.-|+|++++|+-      .-|-+.+.|-++.+.+........ ...-+.+-
T Consensus       108 dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw  187 (461)
T PF05694_consen  108 DPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFW  187 (461)
T ss_dssp             -TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EE
T ss_pred             CCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeE
Confidence            3455566666664   21    1111222336888888752      235688999887777776655332 23356778


Q ss_pred             EcccCCCCeEEEeec--------------------CCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccC
Q 021291           70 TGPSIGLNKVISQGR--------------------DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA  129 (314)
Q Consensus        70 ~~~~~~~~~l~s~~~--------------------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (314)
                      |.|  ..+.++|...                    ..++.+||+.+.+.++    ++.........+.+-+         
T Consensus       188 ~qp--r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q----~idLg~~g~~pLEvRf---------  252 (461)
T PF05694_consen  188 YQP--RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQ----TIDLGEEGQMPLEVRF---------  252 (461)
T ss_dssp             EET--TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEE----EEES-TTEEEEEEEEE---------
T ss_pred             EcC--CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEee----EEecCCCCCceEEEEe---------
Confidence            888  6678887653                    3579999999987654    3333222222222111         


Q ss_pred             CCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEec-CCCc----eeeeecccc-cCCCC----Cc
Q 021291          130 NEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDL-NTAE----RCTRLHQNS-CGGSP----NF  199 (314)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~-~~~~----~~~~~~~~~-~~~~~----~h  199 (314)
                                               ...|+..+-++.+.- ..+|..|-- ..++    .+..+.... .....    .-
T Consensus       253 -------------------------lH~P~~~~gFvg~aL-ss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~  306 (461)
T PF05694_consen  253 -------------------------LHDPDANYGFVGCAL-SSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKP  306 (461)
T ss_dssp             --------------------------SSTT--EEEEEEE---EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGG
T ss_pred             -------------------------cCCCCccceEEEEec-cceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccc
Confidence                                     123444443433332 344444432 3332    122222100 00000    00


Q ss_pred             CCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecC------------------CcceEEEEEe
Q 021291          200 SSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH------------------LEPVLCLSID  261 (314)
Q Consensus       200 ~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h------------------~~~v~~~~~~  261 (314)
                      .......++.+. .+.|   ++++.++.-..|.|+.||+..+.++...-+..                  .+...-|..|
T Consensus       307 ~~~~P~LitDI~-iSlD---DrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS  382 (461)
T PF05694_consen  307 FGAVPPLITDIL-ISLD---DRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLS  382 (461)
T ss_dssp             G-EE------EE-E-TT---S-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-
T ss_pred             cccCCCceEeEE-EccC---CCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEc
Confidence            000135678887 8887   66567778889999999999877665443211                  1123567778


Q ss_pred             CCCCeEEEe
Q 021291          262 ESCNGGISG  270 (314)
Q Consensus       262 ~~~~~l~s~  270 (314)
                      -||+.|...
T Consensus       383 ~DGkRlYvT  391 (461)
T PF05694_consen  383 LDGKRLYVT  391 (461)
T ss_dssp             TTSSEEEEE
T ss_pred             cCCeEEEEE
Confidence            888877443

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.06  E-value=0.12  Score=41.91  Aligned_cols=194  Identities=12%  Similarity=0.070  Sum_probs=105.5

Q ss_pred             eEEEEccCCCEEEEe--cCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCC-CCC
Q 021291           22 TDVCFHQTKPILFAG--TTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN-GGL   98 (314)
Q Consensus        22 ~~~~~~~~~~~l~s~--~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~-~~~   98 (314)
                      ..++++.||++++..  +---.|.|-|+..++.+..+....    ...+--++  + ..|.+.+.||++.-..+.. ++.
T Consensus        98 ~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C~~iyP~~--~-~~F~~lC~DGsl~~v~Ld~~Gk~  170 (342)
T PF06433_consen   98 NMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----CWLIYPSG--N-RGFSMLCGDGSLLTVTLDADGKE  170 (342)
T ss_dssp             GGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----EEEEEEEE--T-TEEEEEETTSCEEEEEETSTSSE
T ss_pred             cceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----EEEEEecC--C-CceEEEecCCceEEEEECCCCCE
Confidence            456888899887764  445679999999999988887654    33333233  3 5688889999999999874 332


Q ss_pred             CCCCeeeeecceeeEEEeeeeecccc------------ccccCCCCcceeeccCCce-ee---ecC----------C-CC
Q 021291           99 SSNPSLTIKTNSYHFCKLSLVKEPYA------------NAKQANEPKDCYEREVGET-VD---TDS----------L-CD  151 (314)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~-~~---~~~----------~-~~  151 (314)
                      ..    .      ....|.....+..            ......+.....++..... ..   ..+          + +-
T Consensus       171 ~~----~------~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~  240 (342)
T PF06433_consen  171 AQ----K------STKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGW  240 (342)
T ss_dssp             EE----E------EEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SS
T ss_pred             eE----e------eccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcce
Confidence            11    0      0112211111110            0111112222222222110 00   000          0 11


Q ss_pred             CCceeccCCCceEEEe--ec----Cc--CeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceE
Q 021291          152 SKDDVPAEGPKYMAVA--GE----QL--SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVN  223 (314)
Q Consensus       152 ~~~~~~~~~~~~~~~~--g~----~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~  223 (314)
                      +.+++++..+.+++.-  |.    .|  ..|-++|+.+++.+.++..             ...+.++. .+.+.  .. +
T Consensus       241 Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-------------~~~~~Si~-Vsqd~--~P-~  303 (342)
T PF06433_consen  241 QLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-------------EHPIDSIA-VSQDD--KP-L  303 (342)
T ss_dssp             S-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-------------EEEESEEE-EESSS--S--E
T ss_pred             eeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-------------CCccceEE-EccCC--Cc-E
Confidence            1167776665555431  11    11  2477889999999999884             23566776 77663  22 5


Q ss_pred             EEE-eecCCcEEEEEccCCCCceEeeec
Q 021291          224 VLA-GYEDGSILVWDIRNPGIPLTAMKV  250 (314)
Q Consensus       224 l~~-g~~dg~i~vwd~~~~~~~~~~~~~  250 (314)
                      |++ ...++.|.+||..+ ++.+.++..
T Consensus       304 L~~~~~~~~~l~v~D~~t-Gk~~~~~~~  330 (342)
T PF06433_consen  304 LYALSAGDGTLDVYDAAT-GKLVRSIEQ  330 (342)
T ss_dssp             EEEEETTTTEEEEEETTT---EEEEE--
T ss_pred             EEEEcCCCCeEEEEeCcC-CcEEeehhc
Confidence            544 45689999999998 888888774

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.94  E-value=0.12  Score=39.91  Aligned_cols=110  Identities=13%  Similarity=0.033  Sum_probs=75.9

Q ss_pred             CCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecc
Q 021291           30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTN  109 (314)
Q Consensus        30 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~  109 (314)
                      ..+++.|+..+.+.--|..+|+.+..-...   .+|.+-+.--   +++++.|...|.+.+.+..+++..++    +...
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg---~RiE~sa~vv---gdfVV~GCy~g~lYfl~~~tGs~~w~----f~~~   92 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG---VRIECSAIVV---GDFVVLGCYSGGLYFLCVKTGSQIWN----FVIL   92 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhC---ceeeeeeEEE---CCEEEEEEccCcEEEEEecchhheee----eeeh
Confidence            467888999999999999999877643222   3355544433   47899999999999999999976552    1111


Q ss_pred             eeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceeeeec
Q 021291          110 SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLH  189 (314)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~  189 (314)
                      ....+.                                      ....+++..+.  +|+.|++.+..|.++..++...+
T Consensus        93 ~~vk~~--------------------------------------a~~d~~~glIy--cgshd~~~yalD~~~~~cVyksk  132 (354)
T KOG4649|consen   93 ETVKVR--------------------------------------AQCDFDGGLIY--CGSHDGNFYALDPKTYGCVYKSK  132 (354)
T ss_pred             hhhccc--------------------------------------eEEcCCCceEE--EecCCCcEEEecccccceEEecc
Confidence            100000                                      12445665333  78999999999999988887755

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.91  E-value=0.024  Score=52.04  Aligned_cols=84  Identities=15%  Similarity=0.144  Sum_probs=60.7

Q ss_pred             CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeec
Q 021291           29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKT  108 (314)
Q Consensus        29 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~  108 (314)
                      .+..++.|+..|.|...|....-. .-.++.....+|++++|+.  +|..++.|-.+|.|.+||+..++..+  .++...
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~-~~~~ne~v~~~Vtsvafn~--dg~~l~~G~~~G~V~v~D~~~~k~l~--~i~e~~  172 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLG-PLHQNERVQGPVTSVAFNQ--DGSLLLAGLGDGHVTVWDMHRAKILK--VITEHG  172 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccc-hhhcCCccCCcceeeEecC--CCceeccccCCCcEEEEEccCCccee--eeeecC
Confidence            455788899999999988764311 1122333336799999999  99999999999999999999987765  555555


Q ss_pred             ceeeEEEee
Q 021291          109 NSYHFCKLS  117 (314)
Q Consensus       109 ~~~~~~~~~  117 (314)
                      .+.....+.
T Consensus       173 ap~t~vi~v  181 (1206)
T KOG2079|consen  173 APVTGVIFV  181 (1206)
T ss_pred             CccceEEEE
Confidence            555444433

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.82  E-value=0.2  Score=40.66  Aligned_cols=79  Identities=14%  Similarity=0.122  Sum_probs=50.3

Q ss_pred             eeeeEEEecCCCCCCceEEEEeecCCcEEEEEccC-CC----C-ceEeeecCCcceEEEEEeCCCCeEEEecCCC-cEEE
Q 021291          206 MCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN-PG----I-PLTAMKVHLEPVLCLSIDESCNGGISGGADQ-KIVL  278 (314)
Q Consensus       206 ~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~-~~----~-~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg-~i~i  278 (314)
                      ....++ |+||   ++.++++=+..+.|+-|++.. .+    + ....+....+..-.++.+.+|.+.+++-.+| .|.+
T Consensus       164 ~~NGla-~SpD---g~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~  239 (307)
T COG3386         164 IPNGLA-FSPD---GKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVR  239 (307)
T ss_pred             ecCceE-ECCC---CCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEE
Confidence            344555 9999   543666666678898888762 11    1 1122223345566788889998765554454 8999


Q ss_pred             EecCCCeeeEe
Q 021291          279 YNLDHSTYVLF  289 (314)
Q Consensus       279 w~~~~~~~~~~  289 (314)
                      |+.+ ++.+..
T Consensus       240 ~~pd-G~l~~~  249 (307)
T COG3386         240 FNPD-GKLLGE  249 (307)
T ss_pred             ECCC-CcEEEE
Confidence            9998 766654

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.74  E-value=0.079  Score=48.26  Aligned_cols=60  Identities=15%  Similarity=0.081  Sum_probs=41.2

Q ss_pred             ecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEccc---CCCCeEEEeecCCeEEEEeCCCC
Q 021291           36 GTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS---IGLNKVISQGRDGTVKCWDIENG   96 (314)
Q Consensus        36 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~l~s~~~dg~v~iwd~~~~   96 (314)
                      ......|+-.|++.|+.+..+..+.. .+|..++-...   ......+.|-.+..|..||.+-.
T Consensus       500 ~~~~~~ly~mDLe~GKVV~eW~~~~~-~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~  562 (794)
T PF08553_consen  500 PNNPNKLYKMDLERGKVVEEWKVHDD-IPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLS  562 (794)
T ss_pred             CCCCCceEEEecCCCcEEEEeecCCC-cceeEecccccccccCCCceEEEECCCceEEeccCCC
Confidence            34567899999999999999988763 22555543210   01245566777889999999854

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.73  E-value=0.0044  Score=56.48  Aligned_cols=67  Identities=15%  Similarity=0.281  Sum_probs=53.7

Q ss_pred             EEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291          223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF  289 (314)
Q Consensus       223 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~  289 (314)
                      .++.|+..|.+...|.+..-.+...-..-..+|++++|+.+|.+++.|=.+|.|.+||+..++.+..
T Consensus       101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~  167 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKV  167 (1206)
T ss_pred             eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceee
Confidence            7899999999999998852222222223367999999999999999999999999999999876654

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.67  E-value=0.17  Score=37.78  Aligned_cols=68  Identities=10%  Similarity=-0.002  Sum_probs=38.6

Q ss_pred             CCCEEEEecCC--CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEE-EeecCCeEEEEeCCCCCCCC
Q 021291           29 TKPILFAGTTG--GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCWDIENGGLSS  100 (314)
Q Consensus        29 ~~~~l~s~~~d--g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~v~iwd~~~~~~~~  100 (314)
                      +|.++.+.+.-  ..|++||+.+++.+..-.....  .+..=-...  -++.+. -.-.||.-..+|.++-++..
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~--~~FgEGit~--~gd~~y~LTw~egvaf~~d~~t~~~lg  125 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPD--TVFGEGITK--LGDYFYQLTWKEGVAFKYDADTLEELG  125 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCc--cccccceee--ccceEEEEEeccceeEEEChHHhhhhc
Confidence            55666666553  4699999999988766543321  121111111  123333 23346778888888876544

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.66  E-value=0.25  Score=39.57  Aligned_cols=236  Identities=14%  Similarity=0.091  Sum_probs=112.9

Q ss_pred             CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCe--e--
Q 021291           29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPS--L--  104 (314)
Q Consensus        29 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~--~--  104 (314)
                      .++.|+.|+.+| +.+++.........+.. .  ..|..+...|  +-+.|+.-+ |+.|.++++..-.......  .  
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~-~--~~I~ql~vl~--~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~   78 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILK-L--SSITQLSVLP--ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP   78 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEee-c--ceEEEEEEec--ccCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence            577899999999 89999833332222222 2  2399999999  666666655 5999999987654322100  0  


Q ss_pred             -------eeecceeeEEEee---eeeccccccccCCCCcceeeccCC--c--eeeecCCCCCC---ceeccCCCceEEEe
Q 021291          105 -------TIKTNSYHFCKLS---LVKEPYANAKQANEPKDCYEREVG--E--TVDTDSLCDSK---DDVPAEGPKYMAVA  167 (314)
Q Consensus       105 -------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~---~~~~~~~~~~~~~~  167 (314)
                             .+.. ......+.   ..........+......++.....  .  .....+.-...   ++|.  ++.+++  
T Consensus        79 ~~~~~~~~~~~-~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v--  153 (275)
T PF00780_consen   79 KSRSLPTKLPE-TKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICV--  153 (275)
T ss_pred             ccccccccccc-cCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEE--
Confidence                   0000 00111111   000111111222223333333321  1  11111111111   6666  344443  


Q ss_pred             ecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceE-
Q 021291          168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT-  246 (314)
Q Consensus       168 g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~-  246 (314)
                      |. .+...+.|+.++.....+............. .......+. --++   ++ +|++-  |..-.+.|..  +++.+ 
T Consensus       154 ~~-~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~-~~~~---~e-~Ll~~--~~~g~fv~~~--G~~~r~  222 (275)
T PF00780_consen  154 GT-SKGFYLIDLNTGSPSELLDPSDSSSSFKSRN-SSSKPLGIF-QLSD---NE-FLLCY--DNIGVFVNKN--GEPSRK  222 (275)
T ss_pred             Ee-CCceEEEecCCCCceEEeCccCCcchhhhcc-cCCCceEEE-EeCC---ce-EEEEe--cceEEEEcCC--CCcCcc
Confidence            33 2568999999776544332110000000000 011112221 1122   33 55543  3333344544  44443 


Q ss_pred             -eeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEeee
Q 021291          247 -AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFGI  291 (314)
Q Consensus       247 -~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~  291 (314)
                       .+.- .....++++...  +|+..+. +.|.||++.+++.+..+.
T Consensus       223 ~~i~W-~~~p~~~~~~~p--yli~~~~-~~iEV~~~~~~~lvQ~i~  264 (275)
T PF00780_consen  223 STIQW-SSAPQSVAYSSP--YLIAFSS-NSIEVRSLETGELVQTIP  264 (275)
T ss_pred             cEEEc-CCchhEEEEECC--EEEEECC-CEEEEEECcCCcEEEEEE
Confidence             3333 446677777544  7777665 459999999998877653

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.66  E-value=0.32  Score=40.84  Aligned_cols=106  Identities=11%  Similarity=0.085  Sum_probs=53.5

Q ss_pred             cCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCC----c
Q 021291          169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI----P  244 (314)
Q Consensus       169 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~----~  244 (314)
                      ....++.+||+.+.+.++++..       +.   .......+. |..+.. ...-++.+....+|..|--...+.    .
T Consensus       219 ~yG~~l~vWD~~~r~~~Q~idL-------g~---~g~~pLEvR-flH~P~-~~~gFvg~aLss~i~~~~k~~~g~W~a~k  286 (461)
T PF05694_consen  219 KYGHSLHVWDWSTRKLLQTIDL-------GE---EGQMPLEVR-FLHDPD-ANYGFVGCALSSSIWRFYKDDDGEWAAEK  286 (461)
T ss_dssp             -S--EEEEEETTTTEEEEEEES--------T---TEEEEEEEE-E-SSTT---EEEEEEE--EEEEEEEE-ETTEEEEEE
T ss_pred             cccCeEEEEECCCCcEeeEEec-------CC---CCCceEEEE-ecCCCC-ccceEEEEeccceEEEEEEcCCCCeeeeE
Confidence            3457899999999999998874       21   123455565 665532 222444444555565554321121    1


Q ss_pred             eEeeec-----------------CCcceEEEEEeCCCCeE-EEecCCCcEEEEecCCCee
Q 021291          245 LTAMKV-----------------HLEPVLCLSIDESCNGG-ISGGADQKIVLYNLDHSTY  286 (314)
Q Consensus       245 ~~~~~~-----------------h~~~v~~~~~~~~~~~l-~s~s~dg~i~iw~~~~~~~  286 (314)
                      +..+..                 -..-|+.|..|.|.++| +++=.+|.|+.||+.....
T Consensus       287 Vi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~  346 (461)
T PF05694_consen  287 VIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFN  346 (461)
T ss_dssp             EEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS
T ss_pred             EEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCC
Confidence            111111                 12357899999999988 4555699999999987643

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.58  E-value=0.3  Score=44.53  Aligned_cols=78  Identities=14%  Similarity=0.156  Sum_probs=52.5

Q ss_pred             CceeEEEEccCCCEEEEecCCCeEEEEeCCC----------CeE---EEEEe------ccCCcccEEEEEEcccC-CCCe
Q 021291           19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQ----------HRT---VSSSW------VHSAAHGIVSVATGPSI-GLNK   78 (314)
Q Consensus        19 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~----------~~~---~~~~~------~~~~~~~v~~~~~~~~~-~~~~   78 (314)
                      -.|..+.++|+|++||..|..|. .|-.+..          |+.   .+++.      .......|..+.|+|.. ++..
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            46888999999999999988774 4444421          111   11111      11112459999999942 2478


Q ss_pred             EEEeecCCeEEEEeCCCCC
Q 021291           79 VISQGRDGTVKCWDIENGG   97 (314)
Q Consensus        79 l~s~~~dg~v~iwd~~~~~   97 (314)
                      |+.-..|+++++||+....
T Consensus       164 l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             EEEEecCCEEEEEecCCCC
Confidence            8888899999999997543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.48  E-value=0.095  Score=41.04  Aligned_cols=109  Identities=16%  Similarity=0.047  Sum_probs=75.8

Q ss_pred             ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeec----
Q 021291          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE----  229 (314)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~----  229 (314)
                      ++++|.-..-++++---.....++|....+.+.++.....--..+|          = .|+||   |+ +|++.-.    
T Consensus        73 i~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGH----------G-vfs~d---G~-~LYATEndfd~  137 (366)
T COG3490          73 IAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGH----------G-VFSPD---GR-LLYATENDFDP  137 (366)
T ss_pred             eecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecc----------c-ccCCC---Cc-EEEeecCCCCC
Confidence            7888888777766544334578899998887777653211111122          1 39998   66 5655433    


Q ss_pred             -CCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEE
Q 021291          230 -DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLY  279 (314)
Q Consensus       230 -dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw  279 (314)
                       -|.|-|||.+..-+.+.++..|.-.-..+.+.+||+.|+.+  +|-|...
T Consensus       138 ~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvva--nGGIeth  186 (366)
T COG3490         138 NRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVA--NGGIETH  186 (366)
T ss_pred             CCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEe--CCceecc
Confidence             37899999998678888999998888999999999988766  3334444

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.34  E-value=0.057  Score=45.46  Aligned_cols=91  Identities=14%  Similarity=0.111  Sum_probs=64.9

Q ss_pred             CCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCC-----------
Q 021291            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIG-----------   75 (314)
Q Consensus         7 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----------   75 (314)
                      |-.....|......+.+++.+|++++.|+...=|.|.++|+.++..++.+++..++ .+.-+......+           
T Consensus       296 ~l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA-qc~wi~~~~~~~~~~~~~~~~~~  374 (415)
T PF14655_consen  296 PLPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA-QCGWIEVPEEGDRDRSNSNSPKS  374 (415)
T ss_pred             ccceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc-eEEEEEeecccccccccccccCC
Confidence            33456677778888999999999999888888899999999999998888887754 111111111000           


Q ss_pred             ----CC-eEEEeecCCeEEEEeCCCCCC
Q 021291           76 ----LN-KVISQGRDGTVKCWDIENGGL   98 (314)
Q Consensus        76 ----~~-~l~s~~~dg~v~iwd~~~~~~   98 (314)
                          .. +++-+-.-|.|.||.++++..
T Consensus       375 ~~~~~l~LvIyaprRg~lEvW~~~~g~R  402 (415)
T PF14655_consen  375 SSRFALFLVIYAPRRGILEVWSMRQGPR  402 (415)
T ss_pred             CCcceEEEEEEeccCCeEEEEecCCCCE
Confidence                01 233566688999999998865

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.27  E-value=0.4  Score=37.58  Aligned_cols=183  Identities=13%  Similarity=0.181  Sum_probs=88.2

Q ss_pred             cEEEEEEcccCCCC-eEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCc
Q 021291           64 GIVSVATGPSIGLN-KVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE  142 (314)
Q Consensus        64 ~v~~~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (314)
                      .+..|+|.|  +.+ +++.....+.|...+.. ++.++  .+.+........                            
T Consensus        23 e~SGLTy~p--d~~tLfaV~d~~~~i~els~~-G~vlr--~i~l~g~~D~Eg----------------------------   69 (248)
T PF06977_consen   23 ELSGLTYNP--DTGTLFAVQDEPGEIYELSLD-GKVLR--RIPLDGFGDYEG----------------------------   69 (248)
T ss_dssp             -EEEEEEET--TTTEEEEEETTTTEEEEEETT---EEE--EEE-SS-SSEEE----------------------------
T ss_pred             CccccEEcC--CCCeEEEEECCCCEEEEEcCC-CCEEE--EEeCCCCCCcee----------------------------
Confidence            499999999  655 55566777888888864 54433  122211110000                            


Q ss_pred             eeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCc------eeeeecccccCCCCCcCCCCCceeeeEEEecCC
Q 021291          143 TVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAE------RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPS  216 (314)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~------~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~  216 (314)
                                 +++.-++  .++++...++.+.++++....      ....+..       +.....+.-.-.++ |+|.
T Consensus        70 -----------I~y~g~~--~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~N~G~EGla-~D~~  128 (248)
T PF06977_consen   70 -----------ITYLGNG--RYVLSEERDQRLYIFTIDDDTTSLDRADVQKISL-------GFPNKGNKGFEGLA-YDPK  128 (248)
T ss_dssp             -----------EEE-STT--EEEEEETTTTEEEEEEE----TT--EEEEEEEE----------S---SS--EEEE-EETT
T ss_pred             -----------EEEECCC--EEEEEEcCCCcEEEEEEeccccccchhhceEEec-------ccccCCCcceEEEE-EcCC
Confidence                       3344444  344455557889999884321      1122221       11111233355565 9987


Q ss_pred             CCCCceEEEEeecCCcEEEEEccC--CCCceEe--ee------cCCcceEEEEEeCCC-CeEEEecCCCcEEEEecCCCe
Q 021291          217 KSQGFVNVLAGYEDGSILVWDIRN--PGIPLTA--MK------VHLEPVLCLSIDESC-NGGISGGADQKIVLYNLDHST  285 (314)
Q Consensus       217 ~~~g~~~l~~g~~dg~i~vwd~~~--~~~~~~~--~~------~h~~~v~~~~~~~~~-~~l~s~s~dg~i~iw~~~~~~  285 (314)
                         ++ .|+++-+..-..+|.++.  ....+..  ..      .....+.+++++|.. .+++....+..|.++| ..|+
T Consensus       129 ---~~-~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~  203 (248)
T PF06977_consen  129 ---TN-RLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGR  203 (248)
T ss_dssp             ---TT-EEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--
T ss_pred             ---CC-EEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCC
Confidence               33 455566776677777653  1111111  11      123457888997754 4556666677777777 3333


Q ss_pred             e----------------eEeeeeeeecCCCceecee
Q 021291          286 Y----------------VLFGIGFVCDQEGNKFGTT  305 (314)
Q Consensus       286 ~----------------~~~~~~~~~~~~~~~~~~~  305 (314)
                      .                +.+..|++++++|.++..+
T Consensus       204 ~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs  239 (248)
T PF06977_consen  204 VVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS  239 (248)
T ss_dssp             EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred             EEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence            2                2346888999999887765

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.12  E-value=0.096  Score=48.70  Aligned_cols=144  Identities=12%  Similarity=-0.011  Sum_probs=87.2

Q ss_pred             eeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCc--CCCCCceeeeEEEecCCCCCCceEEEEeecCCc
Q 021291          155 DVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNF--SSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS  232 (314)
Q Consensus       155 ~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h--~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~  232 (314)
                      ...+|+...++...+.+-.|..||+++.........   .....|  ..+......++. |.|.-+.   ..++...|+.
T Consensus       107 v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~---~pl~~s~ts~ek~vf~~~~~-wnP~vp~---n~av~l~dls  179 (1405)
T KOG3630|consen  107 VCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETT---VPLKNSATSFEKPVFQLKNV-WNPLVPL---NSAVDLSDLS  179 (1405)
T ss_pred             EeccCCceEEEEEecCCceEEEEehHhhhhhhhhhc---cccccccchhcccccccccc-ccCCccc---hhhhhccccc
Confidence            345666655555555556799999986543221100   000011  111233455666 8887543   5677888999


Q ss_pred             EEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEeeeeeeecCCCceeceeec
Q 021291          233 ILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFGIGFVCDQEGNKFGTTWH  307 (314)
Q Consensus       233 i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~w~  307 (314)
                      |++..+......+..+. .....++++|+|.|+.++.|-..|++.-|...-.. ...+.+-..-+.++.+...|.
T Consensus       180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~lei-k~~ip~Pp~~e~yrvl~v~Wl  252 (1405)
T KOG3630|consen  180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEI-KSEIPEPPVEENYRVLSVTWL  252 (1405)
T ss_pred             hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccce-eecccCCCcCCCcceeEEEEe
Confidence            99998875344444433 35678999999999999999999999998765432 222222222234556666664

>PHA03098 kelch-like protein; Provisional

Probab=95.98  E-value=1.1  Score=39.94  Aligned_cols=66  Identities=14%  Similarity=0.073  Sum_probs=34.1

Q ss_pred             CCCEEEEecCCC------eEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC-----CeEEEEeCCCCC
Q 021291           29 TKPILFAGTTGG------ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD-----GTVKCWDIENGG   97 (314)
Q Consensus        29 ~~~~l~s~~~dg------~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----g~v~iwd~~~~~   97 (314)
                      ++.+++.||.++      .+..||..+.+....-...........+.  -  ++..++.|+.+     ..+..||..+++
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~  369 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--F--NNRIYVIGGIYNSISLNTVESWKPGESK  369 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--E--CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence            455667776543      57788887765532211111101112222  2  44677777765     346677777654


Q ss_pred             C
Q 021291           98 L   98 (314)
Q Consensus        98 ~   98 (314)
                      .
T Consensus       370 W  370 (534)
T PHA03098        370 W  370 (534)
T ss_pred             e
Confidence            3

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=95.84  E-value=0.63  Score=38.29  Aligned_cols=91  Identities=15%  Similarity=0.235  Sum_probs=55.9

Q ss_pred             CeEEEEecCCC----ceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCC-ceE
Q 021291          172 SEVEIWDLNTA----ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI-PLT  246 (314)
Q Consensus       172 ~~i~vwd~~~~----~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~-~~~  246 (314)
                      |.|.++++...    ..+..+          |.....+.++++..|.     |  .|+++. ++.|.+|++.. .+ .+.
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i----------~~~~~~g~V~ai~~~~-----~--~lv~~~-g~~l~v~~l~~-~~~l~~  122 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLI----------HSTEVKGPVTAICSFN-----G--RLVVAV-GNKLYVYDLDN-SKTLLK  122 (321)
T ss_dssp             EEEEEEEECSS-----EEEEE----------EEEEESS-EEEEEEET-----T--EEEEEE-TTEEEEEEEET-TSSEEE
T ss_pred             cEEEEEEEEcccccceEEEEE----------EEEeecCcceEhhhhC-----C--EEEEee-cCEEEEEEccC-cccchh
Confidence            88999999884    122222          1122467888888562     3  444443 47899999997 44 332


Q ss_pred             eee-cCCcceEEEEEeCCCCeEEEecCCCcEEEEecCC
Q 021291          247 AMK-VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH  283 (314)
Q Consensus       247 ~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~  283 (314)
                      .-. .....+.++....+  +++.|..-..+.++.++.
T Consensus       123 ~~~~~~~~~i~sl~~~~~--~I~vgD~~~sv~~~~~~~  158 (321)
T PF03178_consen  123 KAFYDSPFYITSLSVFKN--YILVGDAMKSVSLLRYDE  158 (321)
T ss_dssp             EEEE-BSSSEEEEEEETT--EEEEEESSSSEEEEEEET
T ss_pred             hheecceEEEEEEecccc--EEEEEEcccCEEEEEEEc
Confidence            222 12336677766655  888998888888886654

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.81  E-value=0.067  Score=28.65  Aligned_cols=31  Identities=23%  Similarity=0.214  Sum_probs=26.2

Q ss_pred             CceeEEEEccC-C--CEEEEecCCCeEEEEeCCC
Q 021291           19 ASVTDVCFHQT-K--PILFAGTTGGELRIWDTVQ   49 (314)
Q Consensus        19 ~~v~~~~~~~~-~--~~l~s~~~dg~v~iwd~~~   49 (314)
                      +.|.+++|+|+ +  .+|+-+-.-|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            47899999984 4  5888888889999999985

It contains a characteristic DLL sequence motif.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.71  E-value=0.78  Score=36.21  Aligned_cols=73  Identities=14%  Similarity=0.180  Sum_probs=43.8

Q ss_pred             eEEEEcc-CCCEEEEecCCCe-EEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC-----CeEEEEeCC
Q 021291           22 TDVCFHQ-TKPILFAGTTGGE-LRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD-----GTVKCWDIE   94 (314)
Q Consensus        22 ~~~~~~~-~~~~l~s~~~dg~-v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----g~v~iwd~~   94 (314)
                      ..++|+| ...-++.+-.-|+ ..++|..+.+.+.++...++...--.=.|+|  ||.+|+..-.|     |.|-|||.+
T Consensus        71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~--dG~~LYATEndfd~~rGViGvYd~r  148 (366)
T COG3490          71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP--DGRLLYATENDFDPNRGVIGVYDAR  148 (366)
T ss_pred             CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC--CCcEEEeecCCCCCCCceEEEEecc
Confidence            3466666 3444555555554 4577877776666554333211122335888  98888876544     678899987


Q ss_pred             CC
Q 021291           95 NG   96 (314)
Q Consensus        95 ~~   96 (314)
                      .+
T Consensus       149 ~~  150 (366)
T COG3490         149 EG  150 (366)
T ss_pred             cc
Confidence            43

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.70  E-value=1.5  Score=39.39  Aligned_cols=60  Identities=10%  Similarity=-0.042  Sum_probs=37.9

Q ss_pred             CceeEEEEccCCCEEEEec------CCC--eEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC
Q 021291           19 ASVTDVCFHQTKPILFAGT------TGG--ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD   85 (314)
Q Consensus        19 ~~v~~~~~~~~~~~l~s~~------~dg--~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (314)
                      ..+...+++|+|+.++...      .|+  .|.+++.. +.......+.    ....-.|+|  +|+.+++.+..
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~----~~t~PsWsp--DG~~lw~v~dg  417 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH----SLTRPSWSL--DADAVWVVVDG  417 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC----CCCCceECC--CCCceEEEecC
Confidence            3567889999998876554      243  55555643 2232222222    267889999  98888877643

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.69  E-value=1.8  Score=40.17  Aligned_cols=72  Identities=13%  Similarity=0.062  Sum_probs=49.6

Q ss_pred             CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCccc------EEEEEEcc--------------cCCCCeEEEeecCCeE
Q 021291           29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHG------IVSVATGP--------------SIGLNKVISQGRDGTV   88 (314)
Q Consensus        29 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~------v~~~~~~~--------------~~~~~~l~s~~~dg~v   88 (314)
                      .+..|+.++.++.|.-.|..+|+.+.++........      ...+++..              ...+..++.++.|+.|
T Consensus       193 vgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L  272 (764)
T TIGR03074       193 VGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL  272 (764)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence            355788888899999999999999988764332110      11233321              1123578888889999


Q ss_pred             EEEeCCCCCCCC
Q 021291           89 KCWDIENGGLSS  100 (314)
Q Consensus        89 ~iwd~~~~~~~~  100 (314)
                      .-.|.++++...
T Consensus       273 iALDA~TGk~~W  284 (764)
T TIGR03074       273 IALDADTGKLCE  284 (764)
T ss_pred             EEEECCCCCEEE
Confidence            999999997643

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.63  E-value=1.1  Score=37.44  Aligned_cols=95  Identities=7%  Similarity=0.072  Sum_probs=50.3

Q ss_pred             cCCCceEEEeecCcCe--EEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCC----
Q 021291          158 AEGPKYMAVAGEQLSE--VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG----  231 (314)
Q Consensus       158 ~~~~~~~~~~g~~d~~--i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg----  231 (314)
                      +++..++..+- .||.  |.+++...+. ...+..       |     .-.+..+..++++   ++.+.+++..++    
T Consensus       245 ~~~~~~l~~s~-~~G~~hly~~~~~~~~-~~~lT~-------G-----~~~V~~i~~~d~~---~~~iyf~a~~~~p~~r  307 (353)
T PF00930_consen  245 PDGNEFLWISE-RDGYRHLYLYDLDGGK-PRQLTS-------G-----DWEVTSILGWDED---NNRIYFTANGDNPGER  307 (353)
T ss_dssp             TTSSEEEEEEE-TTSSEEEEEEETTSSE-EEESS--------S-----SS-EEEEEEEECT---SSEEEEEESSGGTTSB
T ss_pred             CCCCEEEEEEE-cCCCcEEEEEcccccc-eecccc-------C-----ceeecccceEcCC---CCEEEEEecCCCCCce
Confidence            66666665544 5664  5556665554 333431       1     2234344447776   343555665532    


Q ss_pred             cEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEe
Q 021291          232 SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISG  270 (314)
Q Consensus       232 ~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~  270 (314)
                      .|+..++.. +..+..+......-..+.|+|++++++-.
T Consensus       308 ~lY~v~~~~-~~~~~~LT~~~~~~~~~~~Spdg~y~v~~  345 (353)
T PF00930_consen  308 HLYRVSLDS-GGEPKCLTCEDGDHYSASFSPDGKYYVDT  345 (353)
T ss_dssp             EEEEEETTE-TTEEEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred             EEEEEEeCC-CCCeEeccCCCCCceEEEECCCCCEEEEE
Confidence            444445551 34455565443333689999999987543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.62  E-value=1.1  Score=40.14  Aligned_cols=73  Identities=16%  Similarity=0.105  Sum_probs=49.5

Q ss_pred             eeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCC
Q 021291           21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE   94 (314)
Q Consensus        21 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~   94 (314)
                      ..-+.-+.-++..++-+....+.|||...+.....-.- ...+.|.++.|...++++.+++.+..+.|.+|--.
T Consensus        32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~  104 (631)
T PF12234_consen   32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQL  104 (631)
T ss_pred             cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEcc
Confidence            33444444444333434445799999988764433222 22256999999887799999999999999999653

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.60  E-value=1.6  Score=39.08  Aligned_cols=70  Identities=16%  Similarity=0.119  Sum_probs=44.5

Q ss_pred             ccCCCEEEEecCCC------eEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC------CeEEEEeCC
Q 021291           27 HQTKPILFAGTTGG------ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD------GTVKCWDIE   94 (314)
Q Consensus        27 ~~~~~~l~s~~~dg------~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~v~iwd~~   94 (314)
                      +..+.+++.||.++      .+..+|..+++.......... ..-.+++...   +...++|+.|      .++..||..
T Consensus       282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~-r~~~~~~~~~---~~lYv~GG~~~~~~~l~~ve~YD~~  357 (571)
T KOG4441|consen  282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSP-RCRVGVAVLN---GKLYVVGGYDSGSDRLSSVERYDPR  357 (571)
T ss_pred             CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcc-cccccEEEEC---CEEEEEccccCCCcccceEEEecCC
Confidence            33466778888774      688899887744332222221 2244555554   4788889888      368889998


Q ss_pred             CCCCCC
Q 021291           95 NGGLSS  100 (314)
Q Consensus        95 ~~~~~~  100 (314)
                      +++...
T Consensus       358 ~~~W~~  363 (571)
T KOG4441|consen  358 TNQWTP  363 (571)
T ss_pred             CCceec
Confidence            887544

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.34  E-value=1.8  Score=38.88  Aligned_cols=70  Identities=13%  Similarity=0.117  Sum_probs=38.0

Q ss_pred             CceeeeEEEecCCCCCCceEEEEeecCCcEEE---EEccCCCC-ce---Eeee-cCCcceEEEEEeCCCCeEEEecCCCc
Q 021291          204 RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV---WDIRNPGI-PL---TAMK-VHLEPVLCLSIDESCNGGISGGADQK  275 (314)
Q Consensus       204 ~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~v---wd~~~~~~-~~---~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~  275 (314)
                      .+.+..+. |+||   |. .++.-. ++.|++   -.... +. .+   ..+. +-...+.++.|..++.++ .+..++.
T Consensus       447 ~g~Issl~-wSpD---G~-RiA~i~-~g~v~Va~Vvr~~~-G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~  518 (591)
T PRK13616        447 PGPISELQ-LSRD---GV-RAAMII-GGKVYLAVVEQTED-GQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPE  518 (591)
T ss_pred             CCCcCeEE-ECCC---CC-EEEEEE-CCEEEEEEEEeCCC-CceeecccEEeecccCCccccceEecCCEEE-EEecCCC
Confidence            34577887 9999   55 343333 467777   33222 32 11   1122 223446889998888754 4444444


Q ss_pred             EEEEec
Q 021291          276 IVLYNL  281 (314)
Q Consensus       276 i~iw~~  281 (314)
                      -.+|.+
T Consensus       519 ~~v~~v  524 (591)
T PRK13616        519 HPVWYV  524 (591)
T ss_pred             CceEEE
Confidence            444543

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.19  E-value=1  Score=34.44  Aligned_cols=104  Identities=15%  Similarity=0.132  Sum_probs=64.6

Q ss_pred             ceeccCCCceEEEeecCcCeEEEEe--cCCCce-----eeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEE
Q 021291          154 DDVPAEGPKYMAVAGEQLSEVEIWD--LNTAER-----CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA  226 (314)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~i~vwd--~~~~~~-----~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~  226 (314)
                      ++|+.+.+.+.. .-+.+-+|.-||  ..++..     +..++..   .+..+.. ..++  +   ...   +|. +.++
T Consensus       163 l~Wd~d~K~fY~-iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~---~~~e~~~-PDGm--~---ID~---eG~-L~Va  228 (310)
T KOG4499|consen  163 LAWDSDAKKFYY-IDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKS---QPFESLE-PDGM--T---IDT---EGN-LYVA  228 (310)
T ss_pred             ccccccCcEEEE-EccCceEEeeeecCCCcccccCcceeEEeccC---CCcCCCC-CCcc--e---Ecc---CCc-EEEE
Confidence            888877776655 466677887777  555542     2222210   1111211 1222  1   322   265 6777


Q ss_pred             eecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCC-CC-eEEEecC
Q 021291          227 GYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDES-CN-GGISGGA  272 (314)
Q Consensus       227 g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~-~~-~l~s~s~  272 (314)
                      ....++|...|..+ ++.+.++.-....|++++|-.. -. +.+|+..
T Consensus       229 ~~ng~~V~~~dp~t-GK~L~eiklPt~qitsccFgGkn~d~~yvT~aa  275 (310)
T KOG4499|consen  229 TFNGGTVQKVDPTT-GKILLEIKLPTPQITSCCFGGKNLDILYVTTAA  275 (310)
T ss_pred             EecCcEEEEECCCC-CcEEEEEEcCCCceEEEEecCCCccEEEEEehh
Confidence            77788999999998 9999999988999999999443 22 3345444

>PHA02713 hypothetical protein; Provisional

Probab=95.16  E-value=1.2  Score=39.90  Aligned_cols=20  Identities=0%  Similarity=-0.052  Sum_probs=14.9

Q ss_pred             CceEEEEeecCC--cEEEEEccC
Q 021291          220 GFVNVLAGYEDG--SILVWDIRN  240 (314)
Q Consensus       220 g~~~l~~g~~dg--~i~vwd~~~  240 (314)
                      |. +.++|+.++  .+..||..+
T Consensus       513 ~~-iyv~Gg~~~~~~~e~yd~~~  534 (557)
T PHA02713        513 NT-IMMLHCYESYMLQDTFNVYT  534 (557)
T ss_pred             CE-EEEEeeecceeehhhcCccc
Confidence            44 788888888  677777775

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.16  E-value=1.2  Score=35.00  Aligned_cols=168  Identities=13%  Similarity=0.051  Sum_probs=93.0

Q ss_pred             EEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC--eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccC
Q 021291           52 TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG--TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA  129 (314)
Q Consensus        52 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (314)
                      .+.++ .|........+.|..  ++.++-+.+.-|  .|+.+|+.+++...  ...+.......-               
T Consensus        35 vv~~y-pHd~~aFTQGL~~~~--~g~LyESTG~yG~S~l~~~d~~tg~~~~--~~~l~~~~FgEG---------------   94 (264)
T PF05096_consen   35 VVETY-PHDPTAFTQGLEFLD--DGTLYESTGLYGQSSLRKVDLETGKVLQ--SVPLPPRYFGEG---------------   94 (264)
T ss_dssp             EEEEE-E--TT-EEEEEEEEE--TTEEEEEECSTTEEEEEEEETTTSSEEE--EEE-TTT--EEE---------------
T ss_pred             EEEEC-CCCCcccCccEEecC--CCEEEEeCCCCCcEEEEEEECCCCcEEE--EEECCcccccee---------------
Confidence            34443 355446678899977  777778888766  79999999987543  122221111000               


Q ss_pred             CCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeee
Q 021291          130 NEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMA  209 (314)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  209 (314)
                                              ++..  ++.++..+= .++...+||..+.+.+.++..             .+.-+.
T Consensus        95 ------------------------it~~--~d~l~qLTW-k~~~~f~yd~~tl~~~~~~~y-------------~~EGWG  134 (264)
T PF05096_consen   95 ------------------------ITIL--GDKLYQLTW-KEGTGFVYDPNTLKKIGTFPY-------------PGEGWG  134 (264)
T ss_dssp             ------------------------EEEE--TTEEEEEES-SSSEEEEEETTTTEEEEEEE--------------SSS--E
T ss_pred             ------------------------EEEE--CCEEEEEEe-cCCeEEEEccccceEEEEEec-------------CCcceE
Confidence                                    1111  244554444 469999999999998888873             122333


Q ss_pred             EEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecC--Cc---ceEEEEEeCCCCeEEEecCCCcEEEEecCCC
Q 021291          210 VQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH--LE---PVLCLSIDESCNGGISGGADQKIVLYNLDHS  284 (314)
Q Consensus       210 ~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h--~~---~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~  284 (314)
                      ++ .  +   |. .|+.......|+++|..+ -+....+...  ..   .++-|.|- +|...|=.=....|..-|..+|
T Consensus       135 Lt-~--d---g~-~Li~SDGS~~L~~~dP~~-f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG  205 (264)
T PF05096_consen  135 LT-S--D---GK-RLIMSDGSSRLYFLDPET-FKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETG  205 (264)
T ss_dssp             EE-E--C---SS-CEEEE-SSSEEEEE-TTT--SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-
T ss_pred             EE-c--C---CC-EEEEECCccceEEECCcc-cceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCC
Confidence            33 2  2   44 455544466899999876 5555555432  22   34556664 4555555555666777777777


Q ss_pred             eeeE
Q 021291          285 TYVL  288 (314)
Q Consensus       285 ~~~~  288 (314)
                      +.+.
T Consensus       206 ~V~~  209 (264)
T PF05096_consen  206 KVVG  209 (264)
T ss_dssp             BEEE
T ss_pred             eEEE
Confidence            6543

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=95.09  E-value=0.011  Score=53.20  Aligned_cols=58  Identities=14%  Similarity=0.156  Sum_probs=44.6

Q ss_pred             EEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEE-----------eCCCCeEEEecCCCcEEEEecC
Q 021291          223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSI-----------DESCNGGISGGADQKIVLYNLD  282 (314)
Q Consensus       223 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~-----------~~~~~~l~s~s~dg~i~iw~~~  282 (314)
                      ++..+-.++.|++.....  .....+.+|...++.++|           +|||..++.++.||.+++|.+-
T Consensus       197 ~ic~~~~~~~i~lL~~~r--a~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy  265 (1283)
T KOG1916|consen  197 YICYGLKGGEIRLLNINR--ALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY  265 (1283)
T ss_pred             eeeeccCCCceeEeeech--HHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence            888888899999887764  223455678887777654           7889888999999988888653

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=95.03  E-value=1.6  Score=35.60  Aligned_cols=101  Identities=15%  Similarity=0.154  Sum_probs=57.8

Q ss_pred             ceeccCCCceEEEeecCcCeEEEEecCC--Cceeee---ecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEee
Q 021291          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNT--AERCTR---LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY  228 (314)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~i~vwd~~~--~~~~~~---~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~  228 (314)
                      ++||||++.+++ +-+..+.|.-|++..  +.....   +..       ..   ..+..-.++ ..-+   |..++ ++.
T Consensus       168 la~SpDg~tly~-aDT~~~~i~r~~~d~~~g~~~~~~~~~~~-------~~---~~G~PDG~~-vDad---G~lw~-~a~  231 (307)
T COG3386         168 LAFSPDGKTLYV-ADTPANRIHRYDLDPATGPIGGRRGFVDF-------DE---EPGLPDGMA-VDAD---GNLWV-AAV  231 (307)
T ss_pred             eEECCCCCEEEE-EeCCCCeEEEEecCcccCccCCcceEEEc-------cC---CCCCCCceE-EeCC---CCEEE-ecc
Confidence            899999987765 555567888887752  111110   000       00   111111111 3322   65333 444


Q ss_pred             cCC-cEEEEEccCCCCceEeeecCCcceEEEEE-eCCCCeE-EEecC
Q 021291          229 EDG-SILVWDIRNPGIPLTAMKVHLEPVLCLSI-DESCNGG-ISGGA  272 (314)
Q Consensus       229 ~dg-~i~vwd~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l-~s~s~  272 (314)
                      .+| .|.+|+.+  ++++..+.-....+++++| .++.+.| +|+..
T Consensus       232 ~~g~~v~~~~pd--G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~  276 (307)
T COG3386         232 WGGGRVVRFNPD--GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSAR  276 (307)
T ss_pred             cCCceEEEECCC--CcEEEEEECCCCCCccceEeCCCcCEEEEEecC
Confidence            443 89999988  7888888877788999999 4444444 44433

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.84  E-value=0.32  Score=37.41  Aligned_cols=69  Identities=17%  Similarity=0.254  Sum_probs=49.5

Q ss_pred             EccCCCEEEEecCCCeEEEEeCCCCeEEEEE-------ec-----cCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeC
Q 021291           26 FHQTKPILFAGTTGGELRIWDTVQHRTVSSS-------WV-----HSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI   93 (314)
Q Consensus        26 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-------~~-----~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~   93 (314)
                      +..++++|++-+.+|.+++||+.+++.+..-       ..     ......|..+.++.  +|.-+++-+ +|....|+.
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~--~G~PiV~ls-ng~~y~y~~   94 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS--NGVPIVTLS-NGDSYSYSP   94 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC--CCCEEEEEe-CCCEEEecc
Confidence            3446889999999999999999988764322       10     01224588888887  878777765 578899987


Q ss_pred             CCCC
Q 021291           94 ENGG   97 (314)
Q Consensus        94 ~~~~   97 (314)
                      .-+.
T Consensus        95 ~L~~   98 (219)
T PF07569_consen   95 DLGC   98 (219)
T ss_pred             ccce
Confidence            6543

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=94.84  E-value=1.6  Score=34.89  Aligned_cols=227  Identities=15%  Similarity=0.120  Sum_probs=117.0

Q ss_pred             ceeEEEEccCCCEEEEecCCCeEEEEeCC------CC-eEEEEEeccC---CcccEEEEEEcccC----------CCCeE
Q 021291           20 SVTDVCFHQTKPILFAGTTGGELRIWDTV------QH-RTVSSSWVHS---AAHGIVSVATGPSI----------GLNKV   79 (314)
Q Consensus        20 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~------~~-~~~~~~~~~~---~~~~v~~~~~~~~~----------~~~~l   79 (314)
                      .-+.|+|+|.+.+-++....+...+||..      .. ..+-++....   .+...+.+.|+...          ....|
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            34679999999888888888999999986      12 2233333211   12346778877510          11236


Q ss_pred             EEeecCCeEEEEeCCCCCCCC-CCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceecc
Q 021291           80 ISQGRDGTVKCWDIENGGLSS-NPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPA  158 (314)
Q Consensus        80 ~s~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (314)
                      +.+++||+|.-|...-..... .....+..... ...+                                   ..+++..
T Consensus       104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~-gavY-----------------------------------kGLAi~~  147 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQ-GNVY-----------------------------------KGLAVGP  147 (336)
T ss_pred             EEEeCCceEEeecCcCCcccccccEEEEccCCC-ccee-----------------------------------eeeEEee
Confidence            788899999999864332200 00111110000 0000                                   0033332


Q ss_pred             --CCCceEEEeecCcCeEEEEecCCCcee--eeecccccCCCCCcCC---CCCceeeeEEEecCCCCCCceEEEEeecCC
Q 021291          159 --EGPKYMAVAGEQLSEVEIWDLNTAERC--TRLHQNSCGGSPNFSS---KGRGMCMAVQAYLPSKSQGFVNVLAGYEDG  231 (314)
Q Consensus       159 --~~~~~~~~~g~~d~~i~vwd~~~~~~~--~~~~~~~~~~~~~h~~---~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg  231 (314)
                        .+..+++ +--..++|.+||-.=....  ..+..+..  ..+...   ..-+.-.-+. |...++++. .=+.|..-|
T Consensus       148 ~~~~~~LYa-adF~~g~IDVFd~~f~~~~~~g~F~DP~i--PagyAPFnIqnig~~lyVt-YA~qd~~~~-d~v~G~G~G  222 (336)
T TIGR03118       148 TGGGDYLYA-ANFRQGRIDVFKGSFRPPPLPGSFIDPAL--PAGYAPFNVQNLGGTLYVT-YAQQDADRN-DEVAGAGLG  222 (336)
T ss_pred             cCCCceEEE-eccCCCceEEecCccccccCCCCccCCCC--CCCCCCcceEEECCeEEEE-EEecCCccc-ccccCCCcc
Confidence              2444554 5566789999985422211  01111000  000000   0000001111 222222122 234445557


Q ss_pred             cEEEEEccCCCCceEeee--cCCcceEEEEE------eCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291          232 SILVWDIRNPGIPLTAMK--VHLEPVLCLSI------DESCNGGISGGADQKIVLYNLDHSTYVLF  289 (314)
Q Consensus       232 ~i~vwd~~~~~~~~~~~~--~h~~~v~~~~~------~~~~~~l~s~s~dg~i~iw~~~~~~~~~~  289 (314)
                      .|-+||+.  ++.++.+.  +.-..-+.|+.      ...+.+|+--=.||+|..+|..+++.+-.
T Consensus       223 ~VdvFd~~--G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~  286 (336)
T TIGR03118       223 YVNVFTLN--GQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQ  286 (336)
T ss_pred             eEEEEcCC--CcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeee
Confidence            99999988  78888774  22234566666      33566666666699999999998886544

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.63  E-value=0.17  Score=27.14  Aligned_cols=32  Identities=13%  Similarity=0.128  Sum_probs=25.7

Q ss_pred             cEEEEEEcccCCC--CeEEEeecCCeEEEEeCCCC
Q 021291           64 GIVSVATGPSIGL--NKVISQGRDGTVKCWDIENG   96 (314)
Q Consensus        64 ~v~~~~~~~~~~~--~~l~s~~~dg~v~iwd~~~~   96 (314)
                      .|.++.|+|. .+  ++|+.+-.-|.|.|+|+++.
T Consensus         2 AvR~~kFsP~-~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    2 AVRCCKFSPE-PGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CeEEEEeCCC-CCcccEEEEEccCCeEEEEEcccC
Confidence            3889999983 33  57888888899999999963

It contains a characteristic DLL sequence motif.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=94.50  E-value=2.7  Score=35.84  Aligned_cols=59  Identities=8%  Similarity=-0.060  Sum_probs=38.5

Q ss_pred             ceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEec
Q 021291          221 FVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL  281 (314)
Q Consensus       221 ~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~  281 (314)
                      +.++.+-+.||.+.+|+-+. -.....+.. ---.-.+.|.+....|++++.+..+.-|..
T Consensus       145 ~~~IcVQS~DG~L~~feqe~-~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  145 RDFICVQSMDGSLSFFEQES-FAFSRFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKY  203 (418)
T ss_pred             ceEEEEEecCceEEEEeCCc-EEEEEEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence            44899999999999999774 222222322 222234666666667778777777777765

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.47  E-value=1  Score=42.42  Aligned_cols=96  Identities=13%  Similarity=0.009  Sum_probs=58.9

Q ss_pred             ceeccCCCceEEEeecCcCeEEEEecCCCce-eeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCc
Q 021291          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS  232 (314)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~  232 (314)
                      +.|.|.-....++ ...|+.|++..+..... ...++             .....++++ |+|.   |. .++.|..+|+
T Consensus       161 ~~wnP~vp~n~av-~l~dlsl~V~~~~~~~~~v~s~p-------------~t~~~Tav~-WSpr---GK-Ql~iG~nnGt  221 (1405)
T KOG3630|consen  161 NVWNPLVPLNSAV-DLSDLSLRVKSTKQLAQNVTSFP-------------VTNSQTAVL-WSPR---GK-QLFIGRNNGT  221 (1405)
T ss_pred             ccccCCccchhhh-hccccchhhhhhhhhhhhhcccC-------------cccceeeEE-eccc---cc-eeeEecCCCe
Confidence            4466654433443 44478888887653322 22222             344677887 9998   55 8999999999


Q ss_pred             EEEEEccCCCCceEeeecC----CcceEEEEEeCCCCeEEEe
Q 021291          233 ILVWDIRNPGIPLTAMKVH----LEPVLCLSIDESCNGGISG  270 (314)
Q Consensus       233 i~vwd~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~s~  270 (314)
                      +.-|-..  .+....+...    ...|.+|.|-....+++.-
T Consensus       222 ~vQy~P~--leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy  261 (1405)
T KOG3630|consen  222 EVQYEPS--LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVY  261 (1405)
T ss_pred             EEEeecc--cceeecccCCCcCCCcceeEEEEecceeEEEEe
Confidence            9888755  2222222211    3579999996666666543

>PHA02790 Kelch-like protein; Provisional

Probab=94.37  E-value=3.3  Score=36.33  Aligned_cols=65  Identities=9%  Similarity=0.014  Sum_probs=33.5

Q ss_pred             CCCEEEEecCCC-----eEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC--CeEEEEeCCCCC
Q 021291           29 TKPILFAGTTGG-----ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD--GTVKCWDIENGG   97 (314)
Q Consensus        29 ~~~~l~s~~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d--g~v~iwd~~~~~   97 (314)
                      ++.+++.||.++     .+..||..+++....-......... +++ .-  ++...+.|+.+  .++..||..+++
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~--~~~iYviGG~~~~~sve~ydp~~n~  342 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PA--NNKLYVVGGLPNPTSVERWFHGDAA  342 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EE--CCEEEEECCcCCCCceEEEECCCCe
Confidence            455667777653     5677887776543322111111111 222 22  55666777754  356777765543

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.94  E-value=0.38  Score=37.01  Aligned_cols=64  Identities=14%  Similarity=0.244  Sum_probs=47.7

Q ss_pred             EEEEeecCCcEEEEEccCCCCceE-e------ee-------cCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeE
Q 021291          223 NVLAGYEDGSILVWDIRNPGIPLT-A------MK-------VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVL  288 (314)
Q Consensus       223 ~l~~g~~dg~i~vwd~~~~~~~~~-~------~~-------~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~  288 (314)
                      ++++-+.+|.+++||+.+ .+.+. .      +.       .....|..+.++.+|.-|++-+ +|..+.|+.+-+.-+.
T Consensus        24 ~Ll~iT~~G~l~vWnl~~-~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L~~W~~  101 (219)
T PF07569_consen   24 YLLAITSSGLLYVWNLKK-GKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDLGCWIR  101 (219)
T ss_pred             EEEEEeCCCeEEEEECCC-CeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccccceeEE
Confidence            899999999999999997 33221 1      22       2456788899999998888775 5788999987665443

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.76  E-value=1.9  Score=37.15  Aligned_cols=61  Identities=20%  Similarity=0.159  Sum_probs=42.9

Q ss_pred             EEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCe-----EEEeecCCeEEEEeCCC
Q 021291           32 ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNK-----VISQGRDGTVKCWDIEN   95 (314)
Q Consensus        32 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----l~s~~~dg~v~iwd~~~   95 (314)
                      +|.++.....++-.|++.|+.+..++.+..   |.-+.+.|...+..     -+.|-.|..|.-||++-
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d---i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv  413 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD---INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRV  413 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCC---cceeeccCCcchhcccccccEEeecCCceEEecccc
Confidence            344566666788899999999999988753   77777777222222     23455678899999884

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=93.58  E-value=0.23  Score=37.57  Aligned_cols=65  Identities=12%  Similarity=0.150  Sum_probs=45.2

Q ss_pred             CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEe--ecCCeEEEEeCCCC
Q 021291           29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ--GRDGTVKCWDIENG   96 (314)
Q Consensus        29 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~--~~dg~v~iwd~~~~   96 (314)
                      ++.+..+++.||.|+.|++...+.+.....|.. .++..+..+.  .+..+..+  |.|..++.|++..-
T Consensus       113 ~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~-~~~e~~ivv~--sd~~i~~a~~S~d~~~k~W~ve~~  179 (238)
T KOG2444|consen  113 DSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF-ESGEELIVVG--SDEFLKIADTSHDRVLKKWNVEKI  179 (238)
T ss_pred             ccceeEEeccCCceeeeccccCceeeeeccccC-CCcceeEEec--CCceEEeeccccchhhhhcchhhh
Confidence            556889999999999999998888877766663 2244444444  44566666  66777777776543

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.57  E-value=4.3  Score=34.80  Aligned_cols=161  Identities=11%  Similarity=0.145  Sum_probs=82.0

Q ss_pred             EEEEEEcccCCCCeEEEe-ecCC----eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeecc
Q 021291           65 IVSVATGPSIGLNKVISQ-GRDG----TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYERE  139 (314)
Q Consensus        65 v~~~~~~~~~~~~~l~s~-~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (314)
                      +....++|  ++++++-+ +..|    +|+++|+++++.+.        .....+....                     
T Consensus       126 ~~~~~~Sp--dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~--------d~i~~~~~~~---------------------  174 (414)
T PF02897_consen  126 LGGFSVSP--DGKRLAYSLSDGGSEWYTLRVFDLETGKFLP--------DGIENPKFSS---------------------  174 (414)
T ss_dssp             EEEEEETT--TSSEEEEEEEETTSSEEEEEEEETTTTEEEE--------EEEEEEESEE---------------------
T ss_pred             eeeeeECC--CCCEEEEEecCCCCceEEEEEEECCCCcCcC--------Ccccccccce---------------------
Confidence            44678888  98988743 4444    59999999985322        1111111110                     


Q ss_pred             CCceeeecCCCCCCceeccCCCceEEEeecC---------cCeEEEEecCCCcee--eeecccccCCCCCcCCCCCce-e
Q 021291          140 VGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ---------LSEVEIWDLNTAERC--TRLHQNSCGGSPNFSSKGRGM-C  207 (314)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---------d~~i~vwd~~~~~~~--~~~~~~~~~~~~~h~~~~~~~-~  207 (314)
                                    +.|.++++.++.+.-..         ...|+.|.+.+...-  ..+..        .   .... .
T Consensus       175 --------------~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~--------~---~~~~~~  229 (414)
T PF02897_consen  175 --------------VSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEE--------P---DEPFWF  229 (414)
T ss_dssp             --------------EEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC---------T---TCTTSE
T ss_pred             --------------EEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEee--------c---CCCcEE
Confidence                          34888887776654332         335888888766433  33331        1   1122 4


Q ss_pred             eeEEEecCCCCCCceEEEEeecC---CcEEEEEccCC---CCceEeeecCCcceE-EEEEeCCCCeEEEec--CCCcEEE
Q 021291          208 MAVQAYLPSKSQGFVNVLAGYED---GSILVWDIRNP---GIPLTAMKVHLEPVL-CLSIDESCNGGISGG--ADQKIVL  278 (314)
Q Consensus       208 ~~~~~~~p~~~~g~~~l~~g~~d---g~i~vwd~~~~---~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~s--~dg~i~i  278 (314)
                      ..+. .+++   ++.+++.....   ..+++.|+...   ......+......+. .+....+..++.|-.  ..+.|.-
T Consensus       230 ~~~~-~s~d---~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~  305 (414)
T PF02897_consen  230 VSVS-RSKD---GRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVA  305 (414)
T ss_dssp             EEEE-E-TT---SSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEE
T ss_pred             EEEE-ecCc---ccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEE
Confidence            5555 7776   66344444333   34788888762   233444444444443 344443323333431  2356666


Q ss_pred             EecCCCe
Q 021291          279 YNLDHST  285 (314)
Q Consensus       279 w~~~~~~  285 (314)
                      .++....
T Consensus       306 ~~l~~~~  312 (414)
T PF02897_consen  306 VDLADPS  312 (414)
T ss_dssp             EETTSTS
T ss_pred             ecccccc
Confidence            6777665

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.48  E-value=6.2  Score=36.41  Aligned_cols=45  Identities=16%  Similarity=0.277  Sum_probs=34.0

Q ss_pred             CCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeee
Q 021291          203 GRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK  249 (314)
Q Consensus       203 ~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~  249 (314)
                      ....+..+. |+|.+..+. .|++=..|+++++||+..+..+...+.
T Consensus       145 ~~~~i~qv~-WhP~s~~~~-~l~vLtsdn~lR~y~~~~~~~p~~v~~  189 (717)
T PF10168_consen  145 SSLEIKQVR-WHPWSESDS-HLVVLTSDNTLRLYDISDPQHPWQVLS  189 (717)
T ss_pred             CCceEEEEE-EcCCCCCCC-eEEEEecCCEEEEEecCCCCCCeEEEE
Confidence            345677777 999865555 788888999999999987666655543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]

Probab=93.42  E-value=4.2  Score=34.23  Aligned_cols=175  Identities=13%  Similarity=0.102  Sum_probs=96.9

Q ss_pred             CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCee-eeecceeeEEEeee
Q 021291           40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSL-TIKTNSYHFCKLSL  118 (314)
Q Consensus        40 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~  118 (314)
                      ..|.|.| ++...+..+.+-....+|.++.|..  |-.+++|--.-.-+.+.|+.+.+..+  ++ .++.....      
T Consensus       406 N~vYilD-e~lnvvGkltGl~~gERIYAvRf~g--dv~yiVTfrqtDPlfviDlsNPenPk--vlGeLKIPGfS------  474 (603)
T COG4880         406 NAVYILD-ENLNVVGKLTGLAPGERIYAVRFVG--DVLYIVTFRQTDPLFVIDLSNPENPK--VLGELKIPGFS------  474 (603)
T ss_pred             ceeEEEc-CCCcEEEEEeccCCCceEEEEEEeC--ceEEEEEEeccCceEEEEcCCCCCCc--eeEEEecCCch------
Confidence            3577777 4567777887776667899999988  76677777776778899998766432  11 11111110      


Q ss_pred             eeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCe--EEEEecCCCceeeeecccccCCC
Q 021291          119 VKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSE--VEIWDLNTAERCTRLHQNSCGGS  196 (314)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~--i~vwd~~~~~~~~~~~~~~~~~~  196 (314)
                                                         .-++|-|++.++-.|..+|.  |.+||+.+....+....-     
T Consensus       475 -----------------------------------~YLHpigen~~lGvG~~~g~vKiSLFdiSdl~~PkEv~~y-----  514 (603)
T COG4880         475 -----------------------------------EYLHPIGENRLLGVGAYQGGVKISLFDISDLAAPKEVSNY-----  514 (603)
T ss_pred             -----------------------------------hhccccCCCcEEEeecccCCceEEEEeccCCCCchhhhhe-----
Confidence                                               11556677777666777775  556887754432221100     


Q ss_pred             CCcCCCCCce-eeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEec
Q 021291          197 PNFSSKGRGM-CMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG  271 (314)
Q Consensus       197 ~~h~~~~~~~-~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s  271 (314)
                       .-+. ..+. ...-.+|.-|.. -..+++-+...|.  ++.+.. +..+..-..|...+...-|..|..+++.++
T Consensus       515 -~l~~-~wspvf~dhHAFl~d~~-~~ifFlPay~~gy--if~ied-g~kl~k~~e~k~na~RA~fi~dylY~vg~~  584 (603)
T COG4880         515 -TLSN-AWSPVFYDHHAFLYDPE-AEIFFLPAYLGGY--IFFIED-GSKLRKRAERKLNADRAFFIKDYLYLVGGN  584 (603)
T ss_pred             -ehhh-hcchhhhccceeecCCc-ccEEEecccCccE--EEEEec-CceeeehhhhcccceeeEEecceEEEeccc
Confidence             0000 0000 000001332322 2225566666666  455555 444444446777777777888866655543

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=93.04  E-value=3.1  Score=35.85  Aligned_cols=58  Identities=12%  Similarity=0.126  Sum_probs=45.0

Q ss_pred             EEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecC
Q 021291          223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD  282 (314)
Q Consensus       223 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~  282 (314)
                      ++++++..|.|++||--. ......+.+....|..+..+.+|.++++.+. ..+.+-|+.
T Consensus       575 yIa~as~kGDirLyDRig-~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~  632 (776)
T COG5167         575 YIAAASRKGDIRLYDRIG-KRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP  632 (776)
T ss_pred             eEEEecCCCceeeehhhc-chhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence            899999999999999653 3444556777889999999999998766654 467776664

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=93.01  E-value=1.7  Score=38.08  Aligned_cols=120  Identities=13%  Similarity=0.165  Sum_probs=65.1

Q ss_pred             CCCceeEEEEccC----CCEEEEecCCCeEEEEeCCC-----CeEEEEEec-cCCccc--EEEEEEcccCCCCeEEEeec
Q 021291           17 HRASVTDVCFHQT----KPILFAGTTGGELRIWDTVQ-----HRTVSSSWV-HSAAHG--IVSVATGPSIGLNKVISQGR   84 (314)
Q Consensus        17 h~~~v~~~~~~~~----~~~l~s~~~dg~v~iwd~~~-----~~~~~~~~~-~~~~~~--v~~~~~~~~~~~~~l~s~~~   84 (314)
                      .-..|..+.|.|-    -.-|++......|.||.+..     ++.+..-.. ...+-+  -..+-|+|  ....|+.-..
T Consensus        55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP--k~~iL~VLT~  132 (671)
T PF15390_consen   55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP--KKAILTVLTA  132 (671)
T ss_pred             ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC--CCceEEEEec
Confidence            3456889999984    22444455667899998752     233222111 111111  24677999  6566655444


Q ss_pred             CCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceE
Q 021291           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM  164 (314)
Q Consensus        85 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (314)
                      ...=.+++++......  ...++......|                                       .+|..||++++
T Consensus       133 ~dvSV~~sV~~d~srV--kaDi~~~G~IhC---------------------------------------ACWT~DG~RLV  171 (671)
T PF15390_consen  133 RDVSVLPSVHCDSSRV--KADIKTSGLIHC---------------------------------------ACWTKDGQRLV  171 (671)
T ss_pred             CceeEeeeeeeCCceE--EEeccCCceEEE---------------------------------------EEecCcCCEEE
Confidence            4333455554332211  122333333333                                       56888998888


Q ss_pred             EEeecCcCeEEEEecC
Q 021291          165 AVAGEQLSEVEIWDLN  180 (314)
Q Consensus       165 ~~~g~~d~~i~vwd~~  180 (314)
                      ++.|+ .=.-++||-.
T Consensus       172 VAvGS-sLHSyiWd~~  186 (671)
T PF15390_consen  172 VAVGS-SLHSYIWDSA  186 (671)
T ss_pred             EEeCC-eEEEEEecCc
Confidence            87776 2456777754

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=92.85  E-value=2.9  Score=35.57  Aligned_cols=100  Identities=13%  Similarity=0.143  Sum_probs=60.0

Q ss_pred             ccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCc
Q 021291           63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE  142 (314)
Q Consensus        63 ~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (314)
                      ..+.+++.+|  .+++.++...-|.|.++|+.++..++    -.+......|.+-..........               
T Consensus       308 R~~~~i~~sP--~~~laA~tDslGRV~LiD~~~~~vvr----mWKGYRdAqc~wi~~~~~~~~~~---------------  366 (415)
T PF14655_consen  308 REGESICLSP--SGRLAAVTDSLGRVLLIDVARGIVVR----MWKGYRDAQCGWIEVPEEGDRDR---------------  366 (415)
T ss_pred             ceEEEEEECC--CCCEEEEEcCCCcEEEEECCCChhhh----hhccCccceEEEEEeeccccccc---------------
Confidence            4488999999  87888887778999999999987655    34444444454433221111000               


Q ss_pred             eeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceeeeec
Q 021291          143 TVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLH  189 (314)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~  189 (314)
                            .......-.+....+|++-.-.-|.|.||+++++..+..+.
T Consensus       367 ------~~~~~~~~~~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  367 ------SNSNSPKSSSRFALFLVIYAPRRGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             ------ccccccCCCCcceEEEEEEeccCCeEEEEecCCCCEEEEEE
Confidence                  00000000011122344445557999999999999888776

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=92.78  E-value=6.5  Score=34.68  Aligned_cols=159  Identities=10%  Similarity=0.128  Sum_probs=82.0

Q ss_pred             CceeEEEEccCCCEE-EEec--CCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccC--CCCeEEEeecCCeEEEEeC
Q 021291           19 ASVTDVCFHQTKPIL-FAGT--TGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSI--GLNKVISQGRDGTVKCWDI   93 (314)
Q Consensus        19 ~~v~~~~~~~~~~~l-~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~l~s~~~dg~v~iwd~   93 (314)
                      .+|..++|. ||+.+ +|.-  .+|.++.=|   .+.+..|      +.|..++|.|..  +...|++.-....|.+|.+
T Consensus        20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF------EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL   89 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF------EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQL   89 (671)
T ss_pred             ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc------ceeeeeeecCcccCCCCceEEEeccceEEEEEe
Confidence            467889997 55544 4432  233333222   2233333      349999999831  2235666666789999998


Q ss_pred             CCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC-ceeccCCCceEEEeecCcC
Q 021291           94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-DDVPAEGPKYMAVAGEQLS  172 (314)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~d~  172 (314)
                      ..........+..     ..|.+                            ...++.... ..|+|...-+.+.++. | 
T Consensus        90 ~~s~~e~~K~l~s-----QtcEi----------------------------~e~~pvLpQGCVWHPk~~iL~VLT~~-d-  134 (671)
T PF15390_consen   90 CPSTTERNKLLMS-----QTCEI----------------------------REPFPVLPQGCVWHPKKAILTVLTAR-D-  134 (671)
T ss_pred             ccCccccccceee-----eeeec----------------------------cCCcccCCCcccccCCCceEEEEecC-c-
Confidence            6322111001000     11111                            001111111 6699987755544443 3 


Q ss_pred             eEEEEecCCCce--eeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEcc
Q 021291          173 EVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR  239 (314)
Q Consensus       173 ~i~vwd~~~~~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~  239 (314)
                      .-.+++++....  ...++             ..+.+.|.+ |.+|   |+.++++.+..=.-++||-.
T Consensus       135 vSV~~sV~~d~srVkaDi~-------------~~G~IhCAC-WT~D---G~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  135 VSVLPSVHCDSSRVKADIK-------------TSGLIHCAC-WTKD---GQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             eeEeeeeeeCCceEEEecc-------------CCceEEEEE-ecCc---CCEEEEEeCCeEEEEEecCc
Confidence            234555553332  22233             356677765 9998   55455555555667889864

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=92.47  E-value=0.89  Score=24.00  Aligned_cols=33  Identities=12%  Similarity=0.232  Sum_probs=24.7

Q ss_pred             cCCCEEEE-ecCCCeEEEEeCCCCeEEEEEeccC
Q 021291           28 QTKPILFA-GTTGGELRIWDTVQHRTVSSSWVHS   60 (314)
Q Consensus        28 ~~~~~l~s-~~~dg~v~iwd~~~~~~~~~~~~~~   60 (314)
                      |++++|++ ...+++|.++|..+++.+..+....
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~   34 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGG   34 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCC
Confidence            46666655 4458899999999988888877643

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=92.37  E-value=4.8  Score=32.18  Aligned_cols=158  Identities=13%  Similarity=0.127  Sum_probs=91.0

Q ss_pred             EEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCcee
Q 021291           65 IVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETV  144 (314)
Q Consensus        65 v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (314)
                      +..+.++.    ++...+.++.-++|.|+.+...... +-.+.......                               
T Consensus        89 ~~Dv~vse----~yvyvad~ssGL~IvDIS~P~sP~~-~~~lnt~gyay-------------------------------  132 (370)
T COG5276          89 FADVRVSE----EYVYVADWSSGLRIVDISTPDSPTL-IGFLNTDGYAY-------------------------------  132 (370)
T ss_pred             hheeEecc----cEEEEEcCCCceEEEeccCCCCcce-eccccCCceEE-------------------------------
Confidence            66777765    6788888888899999988753220 01111111221                               


Q ss_pred             eecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEE
Q 021291          145 DTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNV  224 (314)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l  224 (314)
                                .+.-.|+...+  ...|.-+.+.|+.+.......-         .-....+....++ .+     |+ +-
T Consensus       133 ----------gv~vsGn~aYV--adlddgfLivdvsdpssP~lag---------rya~~~~d~~~v~-IS-----Gn-~A  184 (370)
T COG5276         133 ----------GVYVSGNYAYV--ADLDDGFLIVDVSDPSSPQLAG---------RYALPGGDTHDVA-IS-----GN-YA  184 (370)
T ss_pred             ----------EEEecCCEEEE--eeccCcEEEEECCCCCCceeee---------eeccCCCCceeEE-Ee-----cC-eE
Confidence                      24455665554  2324456778877654332111         1011111223333 55     44 67


Q ss_pred             EEeecCCcEEEEEccCCCCceEeeecCCc-ceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeE
Q 021291          225 LAGYEDGSILVWDIRNPGIPLTAMKVHLE-PVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVL  288 (314)
Q Consensus       225 ~~g~~dg~i~vwd~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~  288 (314)
                      ..+..|+-+.+.|+.++..|+..-.-..+ .+.++..+++.-+++..  +--+.+-|....+..+
T Consensus       185 YvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy--~egvlivd~s~~ssp~  247 (370)
T COG5276         185 YVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY--DEGVLIVDVSGPSSPT  247 (370)
T ss_pred             EEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc--ccceEEEecCCCCCce
Confidence            77778999999999987777644333333 67888888886655544  3347777777766443

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=92.35  E-value=3.9  Score=36.79  Aligned_cols=100  Identities=14%  Similarity=0.155  Sum_probs=61.1

Q ss_pred             ecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEcc-----CC-
Q 021291          168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR-----NP-  241 (314)
Q Consensus       168 g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~-----~~-  241 (314)
                      .+....+.|||.+.+.....-.         +  ...+.+..+. |...+ +|+ .+++.+..+.|.+|.-.     +. 
T Consensus        47 ~~~~~~LtIWD~~~~~lE~~~~---------f--~~~~~I~dLD-Wtst~-d~q-siLaVGf~~~v~l~~Q~R~dy~~~~  112 (631)
T PF12234_consen   47 DSSRSELTIWDTRSGVLEYEES---------F--SEDDPIRDLD-WTSTP-DGQ-SILAVGFPHHVLLYTQLRYDYTNKG  112 (631)
T ss_pred             ECCCCEEEEEEcCCcEEEEeee---------e--cCCCceeece-eeecC-CCC-EEEEEEcCcEEEEEEccchhhhcCC
Confidence            4445789999999887443322         1  1245677777 76552 377 45555566788887532     10 


Q ss_pred             --CCceEee--ecCC-cceEEEEEeCCCCeEEEecCCCcEEEEecCC
Q 021291          242 --GIPLTAM--KVHL-EPVLCLSIDESCNGGISGGADQKIVLYNLDH  283 (314)
Q Consensus       242 --~~~~~~~--~~h~-~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~  283 (314)
                        ..++..+  ..|+ .+|.+..|-++|.+++.+  .+.+.|++-.-
T Consensus       113 p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~~  157 (631)
T PF12234_consen  113 PSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKWL  157 (631)
T ss_pred             cccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECCCc
Confidence              1233333  3444 589999999999755443  45688887543

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=92.29  E-value=2.1  Score=38.31  Aligned_cols=67  Identities=12%  Similarity=0.159  Sum_probs=41.4

Q ss_pred             EEEEeecCCcEEEEEccC---CCCceEee-----------ec-----------CCcceEEEEEeC----CCCeEEEecCC
Q 021291          223 NVLAGYEDGSILVWDIRN---PGIPLTAM-----------KV-----------HLEPVLCLSIDE----SCNGGISGGAD  273 (314)
Q Consensus       223 ~l~~g~~dg~i~vwd~~~---~~~~~~~~-----------~~-----------h~~~v~~~~~~~----~~~~l~s~s~d  273 (314)
                      .++.+..||.+.......   .+......           .+           -...+..++++.    +..+|++.+.|
T Consensus       160 ~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~~D  239 (547)
T PF11715_consen  160 NLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLSRD  239 (547)
T ss_dssp             BEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEETT
T ss_pred             EEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEeCC
Confidence            678888899888887664   12211111           00           012445555554    66789999999


Q ss_pred             CcEEEEecCCCeeeEe
Q 021291          274 QKIVLYNLDHSTYVLF  289 (314)
Q Consensus       274 g~i~iw~~~~~~~~~~  289 (314)
                      +.+|+||+.+++++..
T Consensus       240 ~~LRiW~l~t~~~~~~  255 (547)
T PF11715_consen  240 HTLRIWSLETGQCLAT  255 (547)
T ss_dssp             SEEEEEETTTTCEEEE
T ss_pred             CeEEEEECCCCeEEEE
Confidence            9999999999999554

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=92.22  E-value=5.4  Score=32.43  Aligned_cols=70  Identities=20%  Similarity=0.226  Sum_probs=40.6

Q ss_pred             CCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEe
Q 021291           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD   92 (314)
Q Consensus        18 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd   92 (314)
                      .+.+..+..++||+++++++.-....-||-....-...-+...  .+|..|.|.|  ++.+.+ ....|.|+.=+
T Consensus       144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~--~riq~~gf~~--~~~lw~-~~~Gg~~~~s~  213 (302)
T PF14870_consen  144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSS--RRIQSMGFSP--DGNLWM-LARGGQIQFSD  213 (302)
T ss_dssp             ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SS--S-EEEEEE-T--TS-EEE-EETTTEEEEEE
T ss_pred             cceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCcc--ceehhceecC--CCCEEE-EeCCcEEEEcc
Confidence            4567888888999999888776666788754322222222233  5699999999  855555 44788888776

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=92.00  E-value=4.6  Score=31.13  Aligned_cols=78  Identities=9%  Similarity=-0.011  Sum_probs=50.0

Q ss_pred             eeEEEecCCCCCCceEEEEeecCCcEEEEEccCC-C-----CceEeeec---CCc-ceEEEEEeCCCCeEEEecCCCcEE
Q 021291          208 MAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP-G-----IPLTAMKV---HLE-PVLCLSIDESCNGGISGGADQKIV  277 (314)
Q Consensus       208 ~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~-~-----~~~~~~~~---h~~-~v~~~~~~~~~~~l~s~s~dg~i~  277 (314)
                      ..++ |+.+   -+.+.+.-+.+-.|.-||.+.+ +     +.+..++.   ... .--.++.+.+|.+.++.=..++|.
T Consensus       161 Ngl~-Wd~d---~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~  236 (310)
T KOG4499|consen  161 NGLA-WDSD---AKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQ  236 (310)
T ss_pred             cccc-cccc---CcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEE
Confidence            3444 7755   3336777788888988884321 2     22323322   111 223466688888888877888999


Q ss_pred             EEecCCCeeeEe
Q 021291          278 LYNLDHSTYVLF  289 (314)
Q Consensus       278 iw~~~~~~~~~~  289 (314)
                      ..|..+|+.+..
T Consensus       237 ~~dp~tGK~L~e  248 (310)
T KOG4499|consen  237 KVDPTTGKILLE  248 (310)
T ss_pred             EECCCCCcEEEE
Confidence            999999998875

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=91.87  E-value=11  Score=35.21  Aligned_cols=71  Identities=17%  Similarity=0.249  Sum_probs=45.4

Q ss_pred             CCEEEEecCCCeEEEEeCCCCeEEEEEeccCCc----------ccEEEEEEcccCCCCeEEEeec----------CCeEE
Q 021291           30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAA----------HGIVSVATGPSIGLNKVISQGR----------DGTVK   89 (314)
Q Consensus        30 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~----------~~v~~~~~~~~~~~~~l~s~~~----------dg~v~   89 (314)
                      +..++.++.|+.|.-.|.++|+.+..+.....-          ..-..+.-.|.-.++.++.++.          +|.|+
T Consensus       260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~  339 (764)
T TIGR03074       260 ARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIR  339 (764)
T ss_pred             CCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEE
Confidence            447888999999999999999998776432100          0000111112112345666643          68899


Q ss_pred             EEeCCCCCCCC
Q 021291           90 CWDIENGGLSS  100 (314)
Q Consensus        90 iwd~~~~~~~~  100 (314)
                      -+|.+++++..
T Consensus       340 A~Da~TGkl~W  350 (764)
T TIGR03074       340 AFDVNTGALVW  350 (764)
T ss_pred             EEECCCCcEee
Confidence            99999998765

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=91.53  E-value=7.5  Score=32.62  Aligned_cols=234  Identities=11%  Similarity=0.005  Sum_probs=97.7

Q ss_pred             EEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeec------------------
Q 021291           23 DVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR------------------   84 (314)
Q Consensus        23 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~------------------   84 (314)
                      ...++++.+.++-......|+-.|+++.+....+....  ..+-...|....++..++-.-.                  
T Consensus        85 g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~--~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~  162 (386)
T PF14583_consen   85 GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPD--DWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFY  162 (386)
T ss_dssp             T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--T--TEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHH
T ss_pred             ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCc--ccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHH
Confidence            45666777776555455678888999887766666665  3355567754325555443211                  


Q ss_pred             ----CCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccC---CC-CcceeeccCCceeeecCCCCCC---
Q 021291           85 ----DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA---NE-PKDCYEREVGETVDTDSLCDSK---  153 (314)
Q Consensus        85 ----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~---  153 (314)
                          ...|.--|+.+++...  ++.-.. -.....+++........--.   .. ..++|.++........+..+..   
T Consensus       163 ~a~p~~~i~~idl~tG~~~~--v~~~~~-wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~  239 (386)
T PF14583_consen  163 EARPHCRIFTIDLKTGERKV--VFEDTD-WLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGES  239 (386)
T ss_dssp             HC---EEEEEEETTT--EEE--EEEESS--EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEE
T ss_pred             hhCCCceEEEEECCCCceeE--EEecCc-cccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcc
Confidence                1234455666665311  221111 11122222222111111011   11 1255655544333333333322   


Q ss_pred             ---ceeccCCCceEEEee---cCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEe
Q 021291          154 ---DDVPAEGPKYMAVAG---EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG  227 (314)
Q Consensus       154 ---~~~~~~~~~~~~~~g---~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g  227 (314)
                         --|.|+|..+...+.   ..+..|.-+|+.+++.......              ..+.-.. -+++   |. +++--
T Consensus       240 ~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~--------------p~~~H~~-ss~D---g~-L~vGD  300 (386)
T PF14583_consen  240 VGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM--------------PWCSHFM-SSPD---GK-LFVGD  300 (386)
T ss_dssp             EEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE---------------SEEEEE-E-TT---SS-EEEEE
T ss_pred             cccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC--------------CceeeeE-EcCC---CC-EEEec
Confidence               458899988766443   3345678888888765432221              1222222 4454   54 44332


Q ss_pred             ecCC----------------cEEEEEccCCCCceEeeecCC----------c-ceEEEEEeCCCCeE-EEecCCCcEEEE
Q 021291          228 YEDG----------------SILVWDIRNPGIPLTAMKVHL----------E-PVLCLSIDESCNGG-ISGGADQKIVLY  279 (314)
Q Consensus       228 ~~dg----------------~i~vwd~~~~~~~~~~~~~h~----------~-~v~~~~~~~~~~~l-~s~s~dg~i~iw  279 (314)
                      +.|.                -|++++... +.. ..+..|.          . .=....|+||++++ .++...|...||
T Consensus       301 G~d~p~~v~~~~~~~~~~~p~i~~~~~~~-~~~-~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY  378 (386)
T PF14583_consen  301 GGDAPVDVADAGGYKIENDPWIYLFDVEA-GRF-RKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVY  378 (386)
T ss_dssp             E-------------------EEEEEETTT-TEE-EEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEE
T ss_pred             CCCCCccccccccceecCCcEEEEecccc-Cce-eeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEE
Confidence            3321                456677764 322 2222221          1 12457899999986 555567877777


Q ss_pred             ecC
Q 021291          280 NLD  282 (314)
Q Consensus       280 ~~~  282 (314)
                      -++
T Consensus       379 ~v~  381 (386)
T PF14583_consen  379 LVE  381 (386)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            544

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=91.42  E-value=3.5  Score=28.65  Aligned_cols=72  Identities=22%  Similarity=0.330  Sum_probs=47.8

Q ss_pred             eEEEEccCCCEEEEecCCCeEEEEeCCCC--------eEEEEEeccCCcccEEEEEEcc---cCCCCeEEEeecCCeEEE
Q 021291           22 TDVCFHQTKPILFAGTTGGELRIWDTVQH--------RTVSSSWVHSAAHGIVSVATGP---SIGLNKVISQGRDGTVKC   90 (314)
Q Consensus        22 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~--------~~~~~~~~~~~~~~v~~~~~~~---~~~~~~l~s~~~dg~v~i   90 (314)
                      ..-.|......|+.++.-|.|.|++....        ..++.+...   ..|++|+-.+   ..+.+.|+.|+. ..|..
T Consensus         2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin---~~italaaG~l~~~~~~D~LliGt~-t~lla   77 (136)
T PF14781_consen    2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNIN---QEITALAAGRLKPDDGRDCLLIGTQ-TSLLA   77 (136)
T ss_pred             eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECC---CceEEEEEEecCCCCCcCEEEEecc-ceEEE
Confidence            34466666678888999999999987633        234444433   3377775433   334566777765 48999


Q ss_pred             EeCCCCC
Q 021291           91 WDIENGG   97 (314)
Q Consensus        91 wd~~~~~   97 (314)
                      ||+..+.
T Consensus        78 YDV~~N~   84 (136)
T PF14781_consen   78 YDVENNS   84 (136)
T ss_pred             EEcccCc
Confidence            9998775

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=90.88  E-value=4  Score=28.37  Aligned_cols=104  Identities=18%  Similarity=0.153  Sum_probs=60.9

Q ss_pred             ecCcCeEEEEecCCCc--------eeeeecccccCCCCCcCCCCCceeeeEE--EecCCCCCCceEEEEeecCCcEEEEE
Q 021291          168 GEQLSEVEIWDLNTAE--------RCTRLHQNSCGGSPNFSSKGRGMCMAVQ--AYLPSKSQGFVNVLAGYEDGSILVWD  237 (314)
Q Consensus       168 g~~d~~i~vwd~~~~~--------~~~~~~~~~~~~~~~h~~~~~~~~~~~~--~~~p~~~~g~~~l~~g~~dg~i~vwd  237 (314)
                      ++.-++|.|+++....        .+..+..             ...+.+++  .|.|+.  ++..|+.|+. ..|..||
T Consensus        16 aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi-------------n~~italaaG~l~~~~--~~D~LliGt~-t~llaYD   79 (136)
T PF14781_consen   16 ATTGGKVFIHNPHERGQRTGRQDSDISFLNI-------------NQEITALAAGRLKPDD--GRDCLLIGTQ-TSLLAYD   79 (136)
T ss_pred             EecCCEEEEECCCccccccccccCceeEEEC-------------CCceEEEEEEecCCCC--CcCEEEEecc-ceEEEEE
Confidence            3345899999876432        2333331             22344443  366542  2227788775 4789999


Q ss_pred             ccCCCCceEeeecCCcceEEEEE----eCCCCeEEEecCCCcEEEEecCCCeeeEee
Q 021291          238 IRNPGIPLTAMKVHLEPVLCLSI----DESCNGGISGGADQKIVLYNLDHSTYVLFG  290 (314)
Q Consensus       238 ~~~~~~~~~~~~~h~~~v~~~~~----~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~  290 (314)
                      +.+ ..-+. .+.-.+.|+++.+    ..... |+..+.+..|.-||.+..+..|..
T Consensus        80 V~~-N~d~F-yke~~DGvn~i~~g~~~~~~~~-l~ivGGncsi~Gfd~~G~e~fWtV  133 (136)
T PF14781_consen   80 VEN-NSDLF-YKEVPDGVNAIVIGKLGDIPSP-LVIVGGNCSIQGFDYEGNEIFWTV  133 (136)
T ss_pred             ccc-Cchhh-hhhCccceeEEEEEecCCCCCc-EEEECceEEEEEeCCCCcEEEEEe
Confidence            986 33222 2233577888877    22333 444555778888998777666654

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.75  E-value=7.4  Score=31.16  Aligned_cols=190  Identities=9%  Similarity=0.097  Sum_probs=102.5

Q ss_pred             ccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCc
Q 021291           63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE  142 (314)
Q Consensus        63 ~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (314)
                      ..|.++.|+|  +.+.|++......-.+|=..+|+++.  .+.+......          ..                  
T Consensus        86 ~nvS~LTynp--~~rtLFav~n~p~~iVElt~~Gdlir--tiPL~g~~Dp----------E~------------------  133 (316)
T COG3204          86 ANVSSLTYNP--DTRTLFAVTNKPAAIVELTKEGDLIR--TIPLTGFSDP----------ET------------------  133 (316)
T ss_pred             ccccceeeCC--CcceEEEecCCCceEEEEecCCceEE--EecccccCCh----------hH------------------
Confidence            3399999999  88888887777766666656666544  1111111000          00                  


Q ss_pred             eeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceeeeecc-cccCCCCCcCCCCCceeeeEEEecCCCCCCc
Q 021291          143 TVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQ-NSCGGSPNFSSKGRGMCMAVQAYLPSKSQGF  221 (314)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~  221 (314)
                                 +.+.-+|  .++++-..++.+.++.+........+.. .-..   +.....+...-.++ |.|.   ++
T Consensus       134 -----------Ieyig~n--~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L---~~~~k~N~GfEGlA-~d~~---~~  193 (316)
T COG3204         134 -----------IEYIGGN--QFVIVDERDRALYLFTVDADTTVISAKVQKIPL---GTTNKKNKGFEGLA-WDPV---DH  193 (316)
T ss_pred             -----------eEEecCC--EEEEEehhcceEEEEEEcCCccEEeccceEEec---cccCCCCcCceeee-cCCC---Cc
Confidence                       3343443  3444666778888877665432222221 0000   11111122334455 9987   33


Q ss_pred             eEEEEeecCCcEEEEEccCCCCc--eEeeecCC-------cceEEEEEeC-CCCeEEEecCCCcEEEEecCCCee-----
Q 021291          222 VNVLAGYEDGSILVWDIRNPGIP--LTAMKVHL-------EPVLCLSIDE-SCNGGISGGADQKIVLYNLDHSTY-----  286 (314)
Q Consensus       222 ~~l~~g~~dg~i~vwd~~~~~~~--~~~~~~h~-------~~v~~~~~~~-~~~~l~s~s~dg~i~iw~~~~~~~-----  286 (314)
                       .|+.+-+-.-+.||........  +.....+.       ..|.++.|++ .+.+|+-+..++.+.-.|....-.     
T Consensus       194 -~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL  272 (316)
T COG3204         194 -RLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSL  272 (316)
T ss_pred             -eEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEe
Confidence             6777777777888876631111  11111222       2466778864 455667777777777777664421     


Q ss_pred             ----------eEeeeeeeecCCCceecee
Q 021291          287 ----------VLFGIGFVCDQEGNKFGTT  305 (314)
Q Consensus       287 ----------~~~~~~~~~~~~~~~~~~~  305 (314)
                                +.+..|++.+++|.++..+
T Consensus       273 ~~g~~gL~~dipqaEGiamDd~g~lYIvS  301 (316)
T COG3204         273 TKGNHGLSSDIPQAEGIAMDDDGNLYIVS  301 (316)
T ss_pred             ccCCCCCcccCCCcceeEECCCCCEEEEe
Confidence                      1135677777877766554

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=90.62  E-value=1.5  Score=23.06  Aligned_cols=31  Identities=16%  Similarity=0.239  Sum_probs=23.4

Q ss_pred             cCCCceEEEeecCcCeEEEEecCCCceeeeec
Q 021291          158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLH  189 (314)
Q Consensus       158 ~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~  189 (314)
                      |+++.+++ +...+++|.++|..+++.+..+.
T Consensus         1 pd~~~lyv-~~~~~~~v~~id~~~~~~~~~i~   31 (42)
T TIGR02276         1 PDGTKLYV-TNSGSNTVSVIDTATNKVIATIP   31 (42)
T ss_pred             CCCCEEEE-EeCCCCEEEEEECCCCeEEEEEE
Confidence            46676765 45457899999999888777766

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=90.56  E-value=16  Score=34.57  Aligned_cols=246  Identities=12%  Similarity=0.053  Sum_probs=120.4

Q ss_pred             ceeEEEEccCCCEEEEecCCCeEEEEeC--CCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCC
Q 021291           20 SVTDVCFHQTKPILFAGTTGGELRIWDT--VQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG   97 (314)
Q Consensus        20 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~   97 (314)
                      .|.-..|-.|..+|.++..||.+.-|.+  .++..-..-+.+-+..++.--.|+.. ..+.+++++ |+-..+|--+..-
T Consensus       585 SIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk-~~t~vfa~s-drP~viY~~n~kL  662 (1096)
T KOG1897|consen  585 SILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSK-SRTAVFALS-DRPTVIYSSNGKL  662 (1096)
T ss_pred             heeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeC-CceEEEEeC-CCCEEEEecCCcE
Confidence            3444555556789999999999886654  44443322222333345666667662 223444444 5555555544321


Q ss_pred             CCCCCeeeeec-ceeeEEEeeeeeccccccccCCCCcceeeccCCceee-ecCCCCCC---ceeccCCCceEEEeecC--
Q 021291           98 LSSNPSLTIKT-NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVD-TDSLCDSK---DDVPAEGPKYMAVAGEQ--  170 (314)
Q Consensus        98 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~g~~--  170 (314)
                      +..    .+.. .-...|.++....+.......++...+..++.-+.+. ...+-+..   +++.+.. .++.+.+..  
T Consensus       663 v~s----pls~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~s-l~~~v~s~r~e  737 (1096)
T KOG1897|consen  663 VYS----PLSLKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPLGESPRRICYQESS-LTFGVLSNRIE  737 (1096)
T ss_pred             EEe----ccchHHhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeecCCCChhheEecccc-eEEEEEecccc
Confidence            110    1111 1223444544444444455555555555554433211 11221111   5555522 222221110  


Q ss_pred             --------c---CeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeec----------
Q 021291          171 --------L---SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE----------  229 (314)
Q Consensus       171 --------d---~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~----------  229 (314)
                              .   ..++++|..+.+.+...+.        ...+.-..+.++. |..|.  +. ++++|..          
T Consensus       738 ~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef--------~~~E~~~Si~s~~-~~~d~--~t-~~vVGT~~v~Pde~ep~  805 (1096)
T KOG1897|consen  738 SSAEYYGEEYEVSFLRVLDQNTFEVLSSHEF--------ERNETALSIISCK-FTDDP--NT-YYVVGTGLVYPDENEPV  805 (1096)
T ss_pred             cchhhcCCcceEEEEEEecCCceeEEeeccc--------cccceeeeeeeee-ecCCC--ce-EEEEEEEeeccCCCCcc
Confidence                    1   2477788777665554432        1111122344454 76652  33 6777652          


Q ss_pred             CCcEEEEEccCCCCceEeeecC--CcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeE
Q 021291          230 DGSILVWDIRNPGIPLTAMKVH--LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVL  288 (314)
Q Consensus       230 dg~i~vwd~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~  288 (314)
                      .|.|.+|.... .+.+.....+  .+.+.++.. -+|++||.  -...|++|++.+++.+.
T Consensus       806 ~GRIivfe~~e-~~~L~~v~e~~v~Gav~aL~~-fngkllA~--In~~vrLye~t~~~eLr  862 (1096)
T KOG1897|consen  806 NGRIIVFEFEE-LNSLELVAETVVKGAVYALVE-FNGKLLAG--INQSVRLYEWTTERELR  862 (1096)
T ss_pred             cceEEEEEEec-CCceeeeeeeeeccceeehhh-hCCeEEEe--cCcEEEEEEccccceeh
Confidence            47788887775 4444433322  233444332 35555544  46689999999886554

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=90.45  E-value=11  Score=32.46  Aligned_cols=41  Identities=10%  Similarity=0.238  Sum_probs=28.6

Q ss_pred             CCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCC
Q 021291            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTV   48 (314)
Q Consensus         7 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~   48 (314)
                      .++++.++.=-.+.|.++.|+.+. .|+....||.++++|+.
T Consensus        69 sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~  109 (410)
T PF04841_consen   69 SGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF  109 (410)
T ss_pred             CCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC
Confidence            344444443233788888898754 56667899999999986

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PRK10115 protease 2; Provisional

Probab=89.99  E-value=16  Score=33.84  Aligned_cols=72  Identities=7%  Similarity=-0.085  Sum_probs=46.3

Q ss_pred             ceeEEEEccCCCEEEEecC-----CCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC------CeE
Q 021291           20 SVTDVCFHQTKPILFAGTT-----GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD------GTV   88 (314)
Q Consensus        20 ~v~~~~~~~~~~~l~s~~~-----dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~v   88 (314)
                      .+..+.++|||++|+.+..     .-.|++-|+.+++.+...-...    -..++|.+  |++.|+-...+      ..|
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~----~~~~~w~~--D~~~~~y~~~~~~~~~~~~v  201 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV----EPSFVWAN--DSWTFYYVRKHPVTLLPYQV  201 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc----ceEEEEee--CCCEEEEEEecCCCCCCCEE
Confidence            3667889999998875432     3368899998876432211111    14689998  87766654332      367


Q ss_pred             EEEeCCCCC
Q 021291           89 KCWDIENGG   97 (314)
Q Consensus        89 ~iwd~~~~~   97 (314)
                      ..+++.++.
T Consensus       202 ~~h~lgt~~  210 (686)
T PRK10115        202 WRHTIGTPA  210 (686)
T ss_pred             EEEECCCCh
Confidence            888888773

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=89.91  E-value=0.045  Score=46.03  Aligned_cols=107  Identities=14%  Similarity=0.228  Sum_probs=68.8

Q ss_pred             ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcE
Q 021291          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI  233 (314)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i  233 (314)
                      ++|..+++.+++. ....+.+.+||+.+... .++...      +.      ...++..|++-.+    .++.|...|.+
T Consensus        80 m~wDkegdvlavl-Aek~~piylwd~n~eyt-qqLE~g------g~------~s~sll~wsKg~~----el~ig~~~gn~  141 (615)
T KOG2247|consen   80 MAWDKEGDVLAVL-AEKTGPIYLWDVNSEYT-QQLESG------GT------SSKSLLAWSKGTP----ELVIGNNAGNI  141 (615)
T ss_pred             hhhccccchhhhh-hhcCCCeeechhhhhhH-HHHhcc------Cc------chHHHHhhccCCc----cccccccccce
Confidence            4566777766554 44468899999975432 222210      11      1111123877533    78888899999


Q ss_pred             EEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEe
Q 021291          234 LVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN  280 (314)
Q Consensus       234 ~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~  280 (314)
                      .|++..+ .+.+.....|...++++++.+.+. .+.++.|..+.+-.
T Consensus       142 viynhgt-sR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~L~v~~  186 (615)
T KOG2247|consen  142 VIYNHGT-SRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNTLSVTT  186 (615)
T ss_pred             EEEeccc-hhhhhhhcccccceeEEEecccce-eeecCcHHHHHHhh
Confidence            9999987 555555555999999999988775 56666666554433

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.78  E-value=10  Score=36.84  Aligned_cols=34  Identities=18%  Similarity=0.204  Sum_probs=31.0

Q ss_pred             cCCcceEEEEEeCCCCeEEEecCCCcEEEEecCC
Q 021291          250 VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH  283 (314)
Q Consensus       250 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~  283 (314)
                      .+.++|..+..+.....+.+-+..|+|.+|++..
T Consensus       240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             CCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence            5678999999999888999999999999999987

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=89.71  E-value=4.2  Score=30.00  Aligned_cols=33  Identities=21%  Similarity=0.230  Sum_probs=25.3

Q ss_pred             cEEEEEEccc----CCCCeEEEeecCCeEEEEeCCCC
Q 021291           64 GIVSVATGPS----IGLNKVISQGRDGTVKCWDIENG   96 (314)
Q Consensus        64 ~v~~~~~~~~----~~~~~l~s~~~dg~v~iwd~~~~   96 (314)
                      .|..++|||.    +.+-.|++...++.|.||.....
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~  123 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN  123 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence            5899999993    12236788899999999987643

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=89.45  E-value=0.98  Score=40.34  Aligned_cols=40  Identities=15%  Similarity=0.297  Sum_probs=29.5

Q ss_pred             CceeEEEEcc----CCCEEEEecCCCeEEEEeCCCCeEEEEEec
Q 021291           19 ASVTDVCFHQ----TKPILFAGTTGGELRIWDTVQHRTVSSSWV   58 (314)
Q Consensus        19 ~~v~~~~~~~----~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~   58 (314)
                      ..+..++++.    +..+|++.+.|+++|+||+.+++++.+...
T Consensus       215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~  258 (547)
T PF11715_consen  215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATIDL  258 (547)
T ss_dssp             --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEET
T ss_pred             CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEecc
Confidence            3445556655    677999999999999999999999776543

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=89.20  E-value=9.6  Score=30.17  Aligned_cols=109  Identities=8%  Similarity=0.003  Sum_probs=58.1

Q ss_pred             ceeccCCCceEEEee-cCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCc
Q 021291          154 DDVPAEGPKYMAVAG-EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS  232 (314)
Q Consensus       154 ~~~~~~~~~~~~~~g-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~  232 (314)
                      .+++++++.+.++.. .....++++..  +........       +.      ...... |+++   +. ..+....+..
T Consensus        29 ~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~-------g~------~l~~PS-~d~~---g~-~W~v~~~~~~   88 (253)
T PF10647_consen   29 PAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLT-------GG------SLTRPS-WDPD---GW-VWTVDDGSGG   88 (253)
T ss_pred             eEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeecc-------CC------cccccc-ccCC---CC-EEEEEcCCCc
Confidence            778999987776651 11234555543  333222211       11      333333 8887   54 4444445555


Q ss_pred             EEEEE-ccCCCCceEeeecC--CcceEEEEEeCCCCeEEEec---CCCcEEEEecC
Q 021291          233 ILVWD-IRNPGIPLTAMKVH--LEPVLCLSIDESCNGGISGG---ADQKIVLYNLD  282 (314)
Q Consensus       233 i~vwd-~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~s~s---~dg~i~iw~~~  282 (314)
                      .+++. ..........+...  ...|+.+.++|||..++...   .++.|.+=-+.
T Consensus        89 ~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~  144 (253)
T PF10647_consen   89 VRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVV  144 (253)
T ss_pred             eEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEE
Confidence            56553 23211111222211  12899999999999876555   35677776543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>smart00564 PQQ beta-propeller repeat

Probab=88.96  E-value=1.4  Score=21.74  Aligned_cols=25  Identities=20%  Similarity=0.327  Sum_probs=21.1

Q ss_pred             EEEEecCCCeEEEEeCCCCeEEEEE
Q 021291           32 ILFAGTTGGELRIWDTVQHRTVSSS   56 (314)
Q Consensus        32 ~l~s~~~dg~v~iwd~~~~~~~~~~   56 (314)
                      .++.++.+|.+..+|.++|+.+..+
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEEEc
Confidence            6788899999999999999887653

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=88.56  E-value=9.2  Score=35.00  Aligned_cols=74  Identities=4%  Similarity=-0.025  Sum_probs=49.2

Q ss_pred             CCceeeeEEEec--CCCCCCceEEEEeecCCcEEEEEccCCCC--ceEeeecCCcceEEEEEe-----CCCC-eEEEecC
Q 021291          203 GRGMCMAVQAYL--PSKSQGFVNVLAGYEDGSILVWDIRNPGI--PLTAMKVHLEPVLCLSID-----ESCN-GGISGGA  272 (314)
Q Consensus       203 ~~~~~~~~~~~~--p~~~~g~~~l~~g~~dg~i~vwd~~~~~~--~~~~~~~h~~~v~~~~~~-----~~~~-~l~s~s~  272 (314)
                      ....++.++ ++  ..   .+ +||+++....|.||-......  ....-..|...|.+|+|-     +.|. +|++++-
T Consensus       162 v~~SaWGLd-Ih~~~~---~r-lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI  236 (717)
T PF08728_consen  162 VGASAWGLD-IHDYKK---SR-LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDI  236 (717)
T ss_pred             cCCceeEEE-EEecCc---ce-EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEec
Confidence            455788887 76  32   23 888888888888886653111  111111356688999992     3343 7888999


Q ss_pred             CCcEEEEec
Q 021291          273 DQKIVLYNL  281 (314)
Q Consensus       273 dg~i~iw~~  281 (314)
                      .|.+.+|++
T Consensus       237 ~G~v~~~~I  245 (717)
T PF08728_consen  237 SGEVWTFKI  245 (717)
T ss_pred             cCcEEEEEE
Confidence            999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=88.15  E-value=0.71  Score=42.35  Aligned_cols=71  Identities=23%  Similarity=0.262  Sum_probs=46.6

Q ss_pred             CceeEEEEcc---CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEE-----------EcccCCCCeEEEeec
Q 021291           19 ASVTDVCFHQ---TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA-----------TGPSIGLNKVISQGR   84 (314)
Q Consensus        19 ~~v~~~~~~~---~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~-----------~~~~~~~~~l~s~~~   84 (314)
                      ..+.-+.|.|   +..++..+-.+++|++.++.+... ..+++|.  .++..++           .+|  ||+.|++++.
T Consensus       181 s~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs--~~~~d~a~~~~g~~~l~~lSp--DGtv~a~a~~  255 (1283)
T KOG1916|consen  181 SDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHS--QRVTDMAFFAEGVLKLASLSP--DGTVFAWAIS  255 (1283)
T ss_pred             CCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcC--CCcccHHHHhhchhhheeeCC--CCcEEEEeec
Confidence            3444455554   667788888899999888765322 3344454  2244443           567  8888888888


Q ss_pred             CCeEEEEeCC
Q 021291           85 DGTVKCWDIE   94 (314)
Q Consensus        85 dg~v~iwd~~   94 (314)
                      ||.++.|.+.
T Consensus       256 dG~v~f~Qiy  265 (1283)
T KOG1916|consen  256 DGSVGFYQIY  265 (1283)
T ss_pred             CCccceeeee
Confidence            8888888753

>PF01011 PQQ: PQQ enzyme repeat family

Probab=87.96  E-value=2.5  Score=21.92  Aligned_cols=28  Identities=18%  Similarity=0.182  Sum_probs=23.7

Q ss_pred             EEEEecCCCeEEEEeCCCCeEEEEEecc
Q 021291           32 ILFAGTTGGELRIWDTVQHRTVSSSWVH   59 (314)
Q Consensus        32 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~   59 (314)
                      .++.++.||.|.-.|.++|+.+..++..
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~   29 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQTG   29 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence            4566799999999999999999888654

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.66  E-value=22  Score=32.53  Aligned_cols=51  Identities=14%  Similarity=0.274  Sum_probs=37.9

Q ss_pred             CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCC
Q 021291           40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG   96 (314)
Q Consensus        40 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~   96 (314)
                      -.|+||++. |+.+..+.-...  .+..+.|+.  + ..|+....||++++|++-..
T Consensus        64 ~~I~If~~s-G~lL~~~~w~~~--~lI~mgWs~--~-eeLI~v~k~g~v~Vy~~~ge  114 (829)
T KOG2280|consen   64 PYIRIFNIS-GQLLGRILWKHG--ELIGMGWSD--D-EELICVQKDGTVHVYGLLGE  114 (829)
T ss_pred             eeEEEEecc-ccchHHHHhcCC--CeeeecccC--C-ceEEEEeccceEEEeecchh
Confidence            458888854 666655443332  388999998  6 78888999999999998754

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.04  E-value=24  Score=32.31  Aligned_cols=53  Identities=17%  Similarity=0.098  Sum_probs=34.3

Q ss_pred             ceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeee--cCCcceEEEEEeCCC
Q 021291          205 GMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK--VHLEPVLCLSIDESC  264 (314)
Q Consensus       205 ~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~--~h~~~v~~~~~~~~~  264 (314)
                      +.+..+. .+|+   .+ +|+--...|.|.+-+.+. .+.+..+.  .| .+-..++|..+.
T Consensus       217 ~~~~ki~-VS~n---~~-~laLyt~~G~i~~vs~D~-~~~lce~~~~~~-~~p~qm~Wcgnd  271 (829)
T KOG2280|consen  217 SSVVKIS-VSPN---RR-FLALYTETGKIWVVSIDL-SQILCEFNCTDH-DPPKQMAWCGND  271 (829)
T ss_pred             ceEEEEE-EcCC---cc-eEEEEecCCcEEEEecch-hhhhhccCCCCC-CchHhceeecCC
Confidence            3455555 7776   33 888888899999988876 66665555  22 233367775554

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=87.00  E-value=15  Score=29.78  Aligned_cols=79  Identities=19%  Similarity=0.294  Sum_probs=48.9

Q ss_pred             ecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCC---CCCceEEEEeecCCcEEEEEccCCCCc
Q 021291          168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSK---SQGFVNVLAGYEDGSILVWDIRNPGIP  244 (314)
Q Consensus       168 g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~---~~g~~~l~~g~~dg~i~vwd~~~~~~~  244 (314)
                      |.--|.|-+||+. ++.++++...      +.-.    ..+.++ ..|.+   ..|. +|+--..||+|..||..+ ++.
T Consensus       218 G~G~G~VdvFd~~-G~l~~r~as~------g~LN----aPWG~a-~APa~FG~~sg~-lLVGNFGDG~InaFD~~s-G~~  283 (336)
T TIGR03118       218 GAGLGYVNVFTLN-GQLLRRVASS------GRLN----APWGLA-IAPESFGSLSGA-LLVGNFGDGTINAYDPQS-GAQ  283 (336)
T ss_pred             CCCcceEEEEcCC-CcEEEEeccC------Cccc----CCceee-eChhhhCCCCCC-eEEeecCCceeEEecCCC-Cce
Confidence            4445899999975 6777777531      2211    233333 33321   1144 677777899999999987 776


Q ss_pred             eEeeecCCc------ceEEEEE
Q 021291          245 LTAMKVHLE------PVLCLSI  260 (314)
Q Consensus       245 ~~~~~~h~~------~v~~~~~  260 (314)
                      +..+....+      .++.|.|
T Consensus       284 ~g~L~~~~G~pi~i~GLWgL~f  305 (336)
T TIGR03118       284 LGQLLDPDNHPVKVDGLWSLTF  305 (336)
T ss_pred             eeeecCCCCCeEEecCeEEeee
Confidence            666664332      4677888

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PHA03098 kelch-like protein; Provisional

Probab=86.87  E-value=22  Score=31.72  Aligned_cols=66  Identities=12%  Similarity=0.120  Sum_probs=33.4

Q ss_pred             CCCEEEEecCC-----CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC------CeEEEEeCCCCC
Q 021291           29 TKPILFAGTTG-----GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD------GTVKCWDIENGG   97 (314)
Q Consensus        29 ~~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~v~iwd~~~~~   97 (314)
                      ++.+++.||.+     ..+..||..+.+....-.... +..-.+++. -  ++...+.|+.+      ..+..||+.+.+
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~-~r~~~~~~~-~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~  417 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIF-PRYNPCVVN-V--NNLIYVIGGISKNDELLKTVECFSLNTNK  417 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCc-CCccceEEE-E--CCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence            56666777765     346778877654332111111 000112222 2  44666666632      357788887664


Q ss_pred             C
Q 021291           98 L   98 (314)
Q Consensus        98 ~   98 (314)
                      .
T Consensus       418 W  418 (534)
T PHA03098        418 W  418 (534)
T ss_pred             e
Confidence            4

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.36  E-value=18  Score=31.65  Aligned_cols=78  Identities=12%  Similarity=0.036  Sum_probs=45.7

Q ss_pred             ceeEEEEccCCCEEEEecCCCeEEEEe---------CCCCeEEEEEe---------ccCCcccEEEEEEcccC-CCCeEE
Q 021291           20 SVTDVCFHQTKPILFAGTTGGELRIWD---------TVQHRTVSSSW---------VHSAAHGIVSVATGPSI-GLNKVI   80 (314)
Q Consensus        20 ~v~~~~~~~~~~~l~s~~~dg~v~iwd---------~~~~~~~~~~~---------~~~~~~~v~~~~~~~~~-~~~~l~   80 (314)
                      .|..+..++.|..++-.|.+|.+.++=         +++|+..-..+         .....-.+..++|+|.. ....|.
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            567788899999999999999665543         12232211110         01111235667787732 014566


Q ss_pred             EeecCCeEEEEeCCCCC
Q 021291           81 SQGRDGTVKCWDIENGG   97 (314)
Q Consensus        81 s~~~dg~v~iwd~~~~~   97 (314)
                      .-+.|..|++||.....
T Consensus       185 iL~sdnviRiy~lS~~t  201 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSEPT  201 (741)
T ss_pred             EEecCcEEEEEecCCcc
Confidence            66667788888876543

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=86.20  E-value=22  Score=30.93  Aligned_cols=62  Identities=11%  Similarity=0.090  Sum_probs=40.4

Q ss_pred             eEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeE--EEEEe---ccCCcccEEEEEEcc
Q 021291           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT--VSSSW---VHSAAHGIVSVATGP   72 (314)
Q Consensus        11 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~---~~~~~~~v~~~~~~~   72 (314)
                      +.++-..-..-+.|+|.|||++|++--..|.|++++..++..  +..+.   ..........|+++|
T Consensus        22 ~~~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~P   88 (454)
T TIGR03606        22 KKVLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHP   88 (454)
T ss_pred             EEEEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECC
Confidence            334444556778999999998877765579999998655432  21111   111235689999998

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=86.11  E-value=20  Score=30.30  Aligned_cols=104  Identities=15%  Similarity=0.162  Sum_probs=58.2

Q ss_pred             eEEEeecCcCeEEEEecC---CC----ceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEE
Q 021291          163 YMAVAGEQLSEVEIWDLN---TA----ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV  235 (314)
Q Consensus       163 ~~~~~g~~d~~i~vwd~~---~~----~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~v  235 (314)
                      +.+.....+|.+..|-+.   .+    +.++.|..             .+-+-.+. ....  .+  .|+.|-++.-|.-
T Consensus       172 ~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-------------~sQ~EGCV-VDDe--~g--~LYvgEE~~GIW~  233 (381)
T PF02333_consen  172 LYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-------------GSQPEGCV-VDDE--TG--RLYVGEEDVGIWR  233 (381)
T ss_dssp             EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--------------SS-EEEEE-EETT--TT--EEEEEETTTEEEE
T ss_pred             EEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-------------CCcceEEE-Eecc--cC--CEEEecCccEEEE
Confidence            444455567888877664   33    24555552             11233332 4433  13  7889999988888


Q ss_pred             EEccCCC----CceEeeec--CCcceEEEEE--eC--CCCeEEEecCCCcEEEEecCCC
Q 021291          236 WDIRNPG----IPLTAMKV--HLEPVLCLSI--DE--SCNGGISGGADQKIVLYNLDHS  284 (314)
Q Consensus       236 wd~~~~~----~~~~~~~~--h~~~v~~~~~--~~--~~~~l~s~s~dg~i~iw~~~~~  284 (314)
                      |+.+...    ..+....+  ....|..|++  ..  .|.+|+|.-.++...||+.+..
T Consensus       234 y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~  292 (381)
T PF02333_consen  234 YDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP  292 (381)
T ss_dssp             EESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred             EecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            8876311    22222222  3457888887  23  3445566666889999998764

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=86.09  E-value=1.7  Score=36.72  Aligned_cols=164  Identities=12%  Similarity=0.127  Sum_probs=83.6

Q ss_pred             CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEE-EEEecc-CCc--ccEE-EEEEcccCCCCeEEEee
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV-SSSWVH-SAA--HGIV-SVATGPSIGLNKVISQG   83 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~-~~~--~~v~-~~~~~~~~~~~~l~s~~   83 (314)
                      +.++.+..-...|..+-..|||+.|..-+. .++.|+++.+.... +++-.. .+.  ..|+ ++..-.  .+..++.++
T Consensus       211 e~i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~--Gg~SLLv~~  287 (733)
T COG4590         211 EIIRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS--GGFSLLVVH  287 (733)
T ss_pred             hhhhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh--CceeEEEEc
Confidence            334445556677888999999998876555 57899988754321 111111 110  1122 222223  567788889


Q ss_pred             cCCeEEEE-eCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCc------------eeeecCCC
Q 021291           84 RDGTVKCW-DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE------------TVDTDSLC  150 (314)
Q Consensus        84 ~dg~v~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~  150 (314)
                      .||-|.-| |++......   +.      +...++....+.............+.+....            ........
T Consensus       288 ~dG~vsQWFdvr~~~~p~---l~------h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~  358 (733)
T COG4590         288 EDGLVSQWFDVRRDGQPH---LN------HIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQ  358 (733)
T ss_pred             CCCceeeeeeeecCCCCc---ce------eeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhc
Confidence            99998877 554432211   11      1111222222222222222222222222211            11111111


Q ss_pred             CCC-ceeccCCCceEEEeecCcCeEEEEecCCCceeee
Q 021291          151 DSK-DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTR  187 (314)
Q Consensus       151 ~~~-~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~  187 (314)
                      ... +++||.+.+++.  - ..|.++++.+.+..+..+
T Consensus       359 ~~~~~~~Sp~~~~Ll~--e-~~gki~~~~l~Nr~Peis  393 (733)
T COG4590         359 APQLVAMSPNQAYLLS--E-DQGKIRLAQLENRNPEIS  393 (733)
T ss_pred             CcceeeeCcccchhee--e-cCCceEEEEecCCCCCcc
Confidence            112 889999988763  2 357899998887654433

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=85.92  E-value=3.4  Score=21.39  Aligned_cols=32  Identities=9%  Similarity=0.230  Sum_probs=20.1

Q ss_pred             ecCCCCceeEEEEccCCCEEEEe-cCC--CeEEEE
Q 021291           14 LRGHRASVTDVCFHQTKPILFAG-TTG--GELRIW   45 (314)
Q Consensus        14 l~~h~~~v~~~~~~~~~~~l~s~-~~d--g~v~iw   45 (314)
                      +......-....|+|||+.|+-+ ..+  |.-.||
T Consensus         4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            33455667889999999877654 444  555555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.91  E-value=36  Score=33.14  Aligned_cols=31  Identities=23%  Similarity=0.462  Sum_probs=26.3

Q ss_pred             CceeEEEEccCCCEEEEecCCCeEEEEeCCC
Q 021291           19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQ   49 (314)
Q Consensus        19 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~   49 (314)
                      .....++|+|...++|.++.+|.|+++-...
T Consensus        36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~   66 (993)
T KOG1983|consen   36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPG   66 (993)
T ss_pred             CCCcceeeccccceEEEEEecccEEEecccc
Confidence            3556789999989999999999999997543

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=85.81  E-value=27  Score=31.59  Aligned_cols=67  Identities=15%  Similarity=0.183  Sum_probs=40.5

Q ss_pred             CCCEEEEecCC------CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC-----eEEEEeCCCCC
Q 021291           29 TKPILFAGTTG------GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG-----TVKCWDIENGG   97 (314)
Q Consensus        29 ~~~~l~s~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-----~v~iwd~~~~~   97 (314)
                      ++.+.++||.|      .++..||..+.+....-....... =..++..   +|...+.|+.||     +|-.||..+.+
T Consensus       332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~-~~~v~~l---~g~iYavGG~dg~~~l~svE~YDp~~~~  407 (571)
T KOG4441|consen  332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRS-DFGVAVL---DGKLYAVGGFDGEKSLNSVECYDPVTNK  407 (571)
T ss_pred             CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccc-cceeEEE---CCEEEEEeccccccccccEEEecCCCCc
Confidence            45677889998      357788887766433211111101 1122222   567888898886     48889988876


Q ss_pred             CC
Q 021291           98 LS   99 (314)
Q Consensus        98 ~~   99 (314)
                      ..
T Consensus       408 W~  409 (571)
T KOG4441|consen  408 WT  409 (571)
T ss_pred             cc
Confidence            53

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=85.71  E-value=19  Score=29.85  Aligned_cols=109  Identities=11%  Similarity=0.084  Sum_probs=51.5

Q ss_pred             ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeec-C--
Q 021291          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE-D--  230 (314)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~-d--  230 (314)
                      ++|.|+|. +++ + ...|.|++++ ..+.....+....     .-..........++ ++|+-.... +|.+... .  
T Consensus         7 ~a~~pdG~-l~v-~-e~~G~i~~~~-~~g~~~~~v~~~~-----~v~~~~~~gllgia-~~p~f~~n~-~lYv~~t~~~~   75 (331)
T PF07995_consen    7 MAFLPDGR-LLV-A-ERSGRIWVVD-KDGSLKTPVADLP-----EVFADGERGLLGIA-FHPDFASNG-YLYVYYTNADE   75 (331)
T ss_dssp             EEEETTSC-EEE-E-ETTTEEEEEE-TTTEECEEEEE-T-----TTBTSTTBSEEEEE-E-TTCCCC--EEEEEEEEE-T
T ss_pred             EEEeCCCc-EEE-E-eCCceEEEEe-CCCcCcceecccc-----cccccccCCcccce-eccccCCCC-EEEEEEEcccC
Confidence            67899985 443 3 3479999999 4444312221100     01111234567787 999633333 3333222 1  


Q ss_pred             ------CcEEEEEccCCCC-------ceEeeec---CCcceEEEEEeCCCCeEEEecCC
Q 021291          231 ------GSILVWDIRNPGI-------PLTAMKV---HLEPVLCLSIDESCNGGISGGAD  273 (314)
Q Consensus       231 ------g~i~vwd~~~~~~-------~~~~~~~---h~~~v~~~~~~~~~~~l~s~s~d  273 (314)
                            ..|.-|.......       .+..+..   ....-..|.|.|+|.+.++.+..
T Consensus        76 ~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~  134 (331)
T PF07995_consen   76 DGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDG  134 (331)
T ss_dssp             SSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-T
T ss_pred             CCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCC
Confidence                  2344444433111       1112222   23345679999999877766553

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=83.98  E-value=34  Score=31.24  Aligned_cols=178  Identities=11%  Similarity=0.103  Sum_probs=0.0

Q ss_pred             CCceeEEEEccCCCEEEEecCCCeEEEEeC--CCCeEEEEEeccCCcccEEEEEEcccCC----CCeEEEeec-CCeEEE
Q 021291           18 RASVTDVCFHQTKPILFAGTTGGELRIWDT--VQHRTVSSSWVHSAAHGIVSVATGPSIG----LNKVISQGR-DGTVKC   90 (314)
Q Consensus        18 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~l~s~~~-dg~v~i   90 (314)
                      .+.|..+.|.++++.+++.-.+|.|.+||.  ...+....+.......-+++ .|.+.-.    ..++++.+. ++.=-.
T Consensus       129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys-~fv~~~~~~~~~~~ll~v~~~~~~k~~  207 (670)
T PF10395_consen  129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYS-KFVNDFELENGKDLLLTVSQLSNSKLS  207 (670)
T ss_pred             ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehh-hhhcccccccCCceEEEEEEcCCCcEE


Q ss_pred             EeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecC
Q 021291           91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ  170 (314)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  170 (314)
                      |.+-.-.....+.+++...........-..                                   |+.....++..   .
T Consensus       208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~-----------------------------------f~Y~~G~LY~l---~  249 (670)
T PF10395_consen  208 YKLISLSNESSSIFELSSTILENFGLEDSK-----------------------------------FCYQFGKLYQL---S  249 (670)
T ss_pred             EEEEEeccCCcceEEeehheeccCCcccce-----------------------------------EEEeCCEEEEE---e


Q ss_pred             cCeEEEEecCCCceeeeecccccCCCCCcCCCCC-ceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeee
Q 021291          171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGR-GMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK  249 (314)
Q Consensus       171 d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~-~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~  249 (314)
                      +++|.+|++...+...++..       .+--... ....++.+-+|+      .++.+..+ .|++.|+.- ...+.++.
T Consensus       250 ~~~i~~ysip~f~~~~tI~l-------~~ii~~~~~~~vSl~~~s~n------RvLLs~~n-kIyLld~~~-~siLse~~  314 (670)
T PF10395_consen  250 KKTISSYSIPNFQIQKTISL-------PSIIDKESDDLVSLKPPSPN------RVLLSVNN-KIYLLDLKF-ESILSEFE  314 (670)
T ss_pred             CCEEEEEEcCCceEEEEEEe-------chhhccccccceEeecCCCC------eEEEEcCC-EEEEEeehh-hhhhhhhh

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=83.80  E-value=17  Score=27.72  Aligned_cols=56  Identities=11%  Similarity=0.216  Sum_probs=39.1

Q ss_pred             CEEEEecCCCeEEEEeCCC--CeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC------eEEEE
Q 021291           31 PILFAGTTGGELRIWDTVQ--HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG------TVKCW   91 (314)
Q Consensus        31 ~~l~s~~~dg~v~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg------~v~iw   91 (314)
                      ..|+.+.....|.+|++.+  .+.+.++..-   +.|..+.++.  .|++|+|--.+.      .+|+|
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv---~~V~~l~y~~--~GDYlvTlE~k~~~~~~~fvR~Y   92 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV---GRVLQLVYSE--AGDYLVTLEEKNKRSPVDFVRAY   92 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcch---hheeEEEecc--ccceEEEEEeecCCccceEEEEE
Confidence            4555546667899999883  3455555543   5599999999  899999865432      56665

>PHA02790 Kelch-like protein; Provisional

Probab=82.93  E-value=33  Score=30.27  Aligned_cols=66  Identities=11%  Similarity=0.035  Sum_probs=33.3

Q ss_pred             CCCEEEEecCCC--eEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC---eEEEEeCCCCCC
Q 021291           29 TKPILFAGTTGG--ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG---TVKCWDIENGGL   98 (314)
Q Consensus        29 ~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~v~iwd~~~~~~   98 (314)
                      ++.+.+.||.++  .+..||..+++....-......... +++. -  ++...+.|+.++   .+..||.++.+.
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~-~~~~-~--~g~IYviGG~~~~~~~ve~ydp~~~~W  388 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNP-AVAS-I--NNVIYVIGGHSETDTTTEYLLPNHDQW  388 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCccc-EEEE-E--CCEEEEecCcCCCCccEEEEeCCCCEE
Confidence            566667777543  5777887655433211111110111 2222 2  456667777543   466777776543

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=82.12  E-value=4.6  Score=34.91  Aligned_cols=59  Identities=12%  Similarity=0.222  Sum_probs=44.3

Q ss_pred             CEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCC
Q 021291           31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE   94 (314)
Q Consensus        31 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~   94 (314)
                      -++|.|+..|.|++||.-.-+....+.+-.  ..|..+..+.  +|+++++.+.. .+.+-|+.
T Consensus       574 GyIa~as~kGDirLyDRig~rAKtalP~lG--~aIk~idvta--~Gk~ilaTCk~-yllL~d~~  632 (776)
T COG5167         574 GYIAAASRKGDIRLYDRIGKRAKTALPGLG--DAIKHIDVTA--NGKHILATCKN-YLLLTDVP  632 (776)
T ss_pred             ceEEEecCCCceeeehhhcchhhhcCcccc--cceeeeEeec--CCcEEEEeecc-eEEEEecc
Confidence            489999999999999955434444455555  3499999999  88888877754 77788875

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=81.88  E-value=33  Score=29.59  Aligned_cols=31  Identities=16%  Similarity=0.184  Sum_probs=25.0

Q ss_pred             cceEEEEEeCCCCeEEEecCCCcEEEEecCC
Q 021291          253 EPVLCLSIDESCNGGISGGADQKIVLYNLDH  283 (314)
Q Consensus       253 ~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~  283 (314)
                      ..|.+++.++..+.|++...+|.|.+|++..
T Consensus       190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            3488999988889999999999999999975

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=81.20  E-value=32  Score=29.02  Aligned_cols=52  Identities=17%  Similarity=0.128  Sum_probs=32.5

Q ss_pred             cceEEEEEeCCCCeEEEecCC-------------------CcEEEEecCCCeeeEe------eeeeeecCCCceece
Q 021291          253 EPVLCLSIDESCNGGISGGAD-------------------QKIVLYNLDHSTYVLF------GIGFVCDQEGNKFGT  304 (314)
Q Consensus       253 ~~v~~~~~~~~~~~l~s~s~d-------------------g~i~iw~~~~~~~~~~------~~~~~~~~~~~~~~~  304 (314)
                      .....++|.|+|.+.++-+..                   |.|.-++.+.++....      ..+++++++|..+.+
T Consensus       124 ~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~t  200 (367)
T TIGR02604       124 HSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFC  200 (367)
T ss_pred             ccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEE
Confidence            447789999999876655521                   4455556655433222      356778888877664

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.12  E-value=8.5  Score=32.89  Aligned_cols=80  Identities=8%  Similarity=0.155  Sum_probs=52.0

Q ss_pred             eEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEE--EEeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVS--SSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (314)
Q Consensus        11 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v   88 (314)
                      +..-....++|.++.||+|.+.||.--.|.+|.+++....+...  ..+.......|....|+.  + .-++-....| +
T Consensus        59 iSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~--s-~e~A~i~~~G-~  134 (657)
T KOG2377|consen   59 ISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS--S-TEIAFITDQG-I  134 (657)
T ss_pred             ceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEec--C-eeEEEEecCC-e
Confidence            33333456799999999999999999999999999974332211  111112224489999987  4 5555555443 5


Q ss_pred             EEEeCC
Q 021291           89 KCWDIE   94 (314)
Q Consensus        89 ~iwd~~   94 (314)
                      -+|.+.
T Consensus       135 e~y~v~  140 (657)
T KOG2377|consen  135 EFYQVL  140 (657)
T ss_pred             EEEEEc
Confidence            555543

>KOG3611 consensus Semaphorins [Signal transduction mechanisms]

Probab=80.73  E-value=25  Score=32.66  Aligned_cols=80  Identities=20%  Similarity=0.260  Sum_probs=54.6

Q ss_pred             CCceEEecCCCCceeEEEEc----cCCC--EEEEecCCCeEE-EEeCCCC-----eEEEEEeccCCcccEEEEEEcccCC
Q 021291            8 PDPVAVLRGHRASVTDVCFH----QTKP--ILFAGTTGGELR-IWDTVQH-----RTVSSSWVHSAAHGIVSVATGPSIG   75 (314)
Q Consensus         8 ~~~~~~l~~h~~~v~~~~~~----~~~~--~l~s~~~dg~v~-iwd~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~   75 (314)
                      ++|+....+ ....+.++..    .+++  .|+.|+.+|+|. +-.+.+.     ..+..++......+|..|..++  .
T Consensus       398 ~~P~l~~~~-~~~~t~I~Vd~~~~~~~~ydVlflGTd~G~vlKvV~~~~~~~~~~~llEElqvf~~~~pI~~m~Ls~--~  474 (737)
T KOG3611|consen  398 GRPLLVKTG-DYRLTQIVVDRVAGLDGNYDVLFLGTDAGTVLKVVSPGKESGKSNVLLEELQVFPDAEPIRSMQLSS--K  474 (737)
T ss_pred             CCceEEecc-cceEEEEEEEEecCCCCcEEEEEEecCCCeEEEEEecCCccCccceeEEEEeecCCCCceeEEEecc--c
Confidence            357777766 6777778776    4444  577899999753 3333221     1455565555446799999999  7


Q ss_pred             CCeEEEeecCCeEEE
Q 021291           76 LNKVISQGRDGTVKC   90 (314)
Q Consensus        76 ~~~l~s~~~dg~v~i   90 (314)
                      .+.|+.|+.+|.++|
T Consensus       475 ~~~LyVgs~~gV~qv  489 (737)
T KOG3611|consen  475 RGSLYVGSRSGVVQV  489 (737)
T ss_pred             CCeEEEEccCcEEEe
Confidence            678999998886665

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=80.59  E-value=23  Score=26.99  Aligned_cols=28  Identities=14%  Similarity=0.128  Sum_probs=19.5

Q ss_pred             CceEEEeecCcCeEEEEecCCCceeeeec
Q 021291          161 PKYMAVAGEQLSEVEIWDLNTAERCTRLH  189 (314)
Q Consensus       161 ~~~~~~~g~~d~~i~vwd~~~~~~~~~~~  189 (314)
                      +.+...+= .||.-..||.++.+++..+.
T Consensus       101 d~~y~LTw-~egvaf~~d~~t~~~lg~~~  128 (262)
T COG3823         101 DYFYQLTW-KEGVAFKYDADTLEELGRFS  128 (262)
T ss_pred             ceEEEEEe-ccceeEEEChHHhhhhcccc
Confidence            44444344 37888999999888777665

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=80.27  E-value=47  Score=30.76  Aligned_cols=70  Identities=9%  Similarity=0.132  Sum_probs=46.5

Q ss_pred             CCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCC
Q 021291           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE   94 (314)
Q Consensus        18 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~   94 (314)
                      ..-++++.-+|.|+-++.+..||.|++|+....+........   .+-..+.|..    .-|+++..|..+.-|.-+
T Consensus        14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~---~p~~nlv~tn----hgl~~~tsdrr~la~~~d   83 (1636)
T KOG3616|consen   14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEA---KPKENLVFTN----HGLVTATSDRRALAWKED   83 (1636)
T ss_pred             cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhc---CCccceeeec----cceEEEeccchhheeecc
Confidence            345778888899999999999999999997654332211111   2234555654    446667777777777543

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=80.06  E-value=8.1  Score=35.33  Aligned_cols=83  Identities=19%  Similarity=0.197  Sum_probs=54.3

Q ss_pred             ceEEecCCCCceeEEEEc--cCCCEEEEecCCCeEEEEeCCCCe-EEEEEeccCCcccEEEEEEcccC---CCC-eEEEe
Q 021291           10 PVAVLRGHRASVTDVCFH--QTKPILFAGTTGGELRIWDTVQHR-TVSSSWVHSAAHGIVSVATGPSI---GLN-KVISQ   82 (314)
Q Consensus        10 ~~~~l~~h~~~v~~~~~~--~~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~---~~~-~l~s~   82 (314)
                      |...++ -...++.++++  ...++||+++....|.||-..... ....-..+.....|-+|+|.+..   +|. .++++
T Consensus       156 P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~  234 (717)
T PF08728_consen  156 PFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVAT  234 (717)
T ss_pred             CCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEE
Confidence            334444 23489999998  778899999888888888654321 11111112222349999998732   122 77889


Q ss_pred             ecCCeEEEEeC
Q 021291           83 GRDGTVKCWDI   93 (314)
Q Consensus        83 ~~dg~v~iwd~   93 (314)
                      +-.|.+.+|++
T Consensus       235 dI~G~v~~~~I  245 (717)
T PF08728_consen  235 DISGEVWTFKI  245 (717)
T ss_pred             eccCcEEEEEE
Confidence            99999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	314
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		1e-04
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		3e-04
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		4e-04
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		4e-04
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		7e-04

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/287 (18%), Positives = 114/287 (39%), Gaps = 44/287 (15%)
Query: 14  LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
           L+GH  SV D+ F  +  +L + +    +++WD      + +  +H   H + SV+  P+
Sbjct: 146 LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRT--MHGHDHNVSSVSIMPN 203
Query: 74  IGLNKVISQGRDGTVKCWDIENGGL----------------SSNPSLTIKTNSYHFCKLS 117
              + ++S  RD T+K W+++ G                  + + +L    ++    ++ 
Sbjct: 204 --GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
Query: 118 LV--KEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVE 175
           +V  KE  A  ++     +C       +  + S     +   +  P    ++G +   ++
Sbjct: 262 VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 321
Query: 176 IWDLNTAERCTRL--HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI 233
           +WD++T      L  H N   G   F S G+                   +L+  +D ++
Sbjct: 322 MWDVSTGMCLMTLVGHDNWVRGVL-FHSGGKF------------------ILSCADDKTL 362
Query: 234 LVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN 280
            VWD +N    +  +  H   V  L   ++    ++G  DQ + ++ 
Sbjct: 363 RVWDYKNKRC-MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 10  PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA 69
           P   L GH   ++ + F+ T  +L + +  G LRIW      + +  + HS      S+ 
Sbjct: 239 PTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQ-----SIV 293
Query: 70  TGPSIGLNKVISQGRDGTVKCWDIENGGL 98
           +   +G +KVIS   DG+V+ W ++   L
Sbjct: 294 SASWVGDDKVISCSMDGSVRLWSLKQNTL 322

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Query: 6   PPPDP--VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAH 63
           P  +P  V VLRGH ASV  V  H    I+ +G+    L +WD  Q + +       + H
Sbjct: 256 PEENPYFVGVLRGHMASVRTVSGHGN--IVVSGSYDNTLIVWDVAQMKCLYIL----SGH 309
Query: 64  GIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL 98
                +T       + IS   D T++ WD+ENG L
Sbjct: 310 TDRIYSTIYDHERKRCISASMDTTIRIWDLENGEL 344

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Query: 6   PPPDP--VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAH 63
           P  +P  V VLRGH ASV  V  H    I+ +G+    L +WD  Q + +       + H
Sbjct: 256 PEENPYFVGVLRGHXASVRTVSGHGN--IVVSGSYDNTLIVWDVAQXKCLYIL----SGH 309
Query: 64  GIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL 98
                +T       + IS   D T++ WD+ENG L
Sbjct: 310 TDRIYSTIYDHERKRCISASXDTTIRIWDLENGEL 344

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 11  VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT 70
           V +L+GH   +  + +  +   L +G+    +RIWD    RT   S   S   G+ +VA 
Sbjct: 158 VMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDL---RTGQCSLTLSIEDGVTTVAV 214
Query: 71  GPSIGLNKVISQGR-DGTVKCWDIENGGL 98
            P  G  K I+ G  D  V+ WD E G L
Sbjct: 215 SPGDG--KYIAAGSLDRAVRVWDSETGFL 241

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	314
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.98
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.98
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.98
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.98
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.97
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.97
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.97
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.96
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.96
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.96
2pm7_B	297	Protein transport protein SEC13, protein transport	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.95
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.95
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.95
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.95
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.95
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.94
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.94
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.94
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.93
3jro_A	753	Fusion protein of protein transport protein SEC13	99.93
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.92
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.91
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.9
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.9
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.9
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.89
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.89
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.88
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.88
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.87
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.87
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.87
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.86
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.86
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.85
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.85
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.84
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.84
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.84
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.84
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.84
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.83
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.83
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.82
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.81
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.81
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.81
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.8
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.79
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.79
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.79
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.78
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.74
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.74
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.73
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.72
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.72
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.72
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.71
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.71
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.7
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.7
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.67
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.67
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.65
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.65
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.64
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.64
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.64
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.63
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.62
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.61
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.59
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.59
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.59
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.58
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.57
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.56
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.56
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.56
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.51
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.49
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.48
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.48
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.46
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.46
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.46
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.44
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.44
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.44
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.43
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.42
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.41
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.37
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.34
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.33
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.32
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.32
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.32
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.3
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.3
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.29
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.29
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.28
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.27
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.24
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.21
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.19
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.16
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.16
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.14
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.13
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.13
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.11
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.07
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.07
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.07
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.04
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.04
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.0
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.0
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.98
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.95
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.94
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.91
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.9
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.9
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.89
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.88
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.87
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.83
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.81
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.79
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.79
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.76
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.72
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.72
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.69
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.69
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.66
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.64
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.6
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.58
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.5
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.45
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.4
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.39
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.32
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.32
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.27
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.27
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.22
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.21
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.19
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.17
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.17
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.07
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.0
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.99
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.99
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.9
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.87
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.86
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.86
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.82
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.82
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.81
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.79
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.77
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.74
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.65
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.64
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.58
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.54
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.54
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.52
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.52
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.5
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.45
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.43
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.41
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.33
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.3
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.27
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.23
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.12
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.09
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.08
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.07
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.04
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.97
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.96
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.93
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.75
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.62
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.43
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.4
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.3
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.15
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.12
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	95.99
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	95.91
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	95.83
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	95.6
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	95.42
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	95.39
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	94.96
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	94.83
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	94.72
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	94.63
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	94.56
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	94.23
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	94.23
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	93.45
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	93.36
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	93.19
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	93.06
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	92.88
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	92.8
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	92.54
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	92.3
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	92.29
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	92.08
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	91.99
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	91.48
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	91.47
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	91.44
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	90.55
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	90.32
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	88.74
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	87.87
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	87.47
3ott_A	758	Two-component system sensor histidine kinase; beta	87.12
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	86.96
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	85.23
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	84.44
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	84.23
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	83.8
3ott_A	758	Two-component system sensor histidine kinase; beta	82.87
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	82.59
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	82.25

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=3.8e-41  Score=272.52  Aligned_cols=259  Identities=15%  Similarity=0.184  Sum_probs=212.6

Q ss_pred             CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v   88 (314)
                      +..++|++|.+.|++++|+|++++|++|+.||+|++||+++++.+..+..|...  |.+++|+|  ++++|++|+.|++|
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~--v~~~~~~~--~~~~l~s~s~d~~i   79 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETP--VRAGKFIA--RKNWIIVGSDDFRI   79 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC--EEEEEEEG--GGTEEEEEETTSEE
T ss_pred             eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCc--EEEEEEeC--CCCEEEEECCCCEE
Confidence            567899999999999999999999999999999999999999999999999854  99999999  99999999999999


Q ss_pred             EEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCceE
Q 021291           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYM  164 (314)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  164 (314)
                      ++||+++++.+.  .+..+........+++... ........+...+|++.........+.+|..    ++|+|.+..++
T Consensus        80 ~vwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l  156 (304)
T 2ynn_A           80 RVFNYNTGEKVV--DFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTF  156 (304)
T ss_dssp             EEEETTTCCEEE--EEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEE
T ss_pred             EEEECCCCcEEE--EEeCCCCcEEEEEEcCCCC-EEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEE
Confidence            999999987643  3333444444455554432 2334555677889999887777777788877    88999655555


Q ss_pred             EEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCc
Q 021291          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (314)
Q Consensus       165 ~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~  244 (314)
                      + +|+.|++|++||++++.....+..       +|    ...+..+. |+|... +. +|++|+.|+.|++||+++ +++
T Consensus       157 ~-sgs~D~~v~iwd~~~~~~~~~~~~-------~~----~~~v~~~~-~~~~~~-~~-~l~s~s~D~~i~iWd~~~-~~~  220 (304)
T 2ynn_A          157 A-SGCLDRTVKVWSLGQSTPNFTLTT-------GQ----ERGVNYVD-YYPLPD-KP-YMITASDDLTIKIWDYQT-KSC  220 (304)
T ss_dssp             E-EEETTSEEEEEETTCSSCSEEEEC-------CC----TTCEEEEE-ECCSTT-CC-EEEEEETTSEEEEEETTT-TEE
T ss_pred             E-EEeCCCeEEEEECCCCCccceecc-------CC----cCcEEEEE-EEEcCC-CC-EEEEEcCCCeEEEEeCCC-Ccc
Confidence            5 677799999999998877666552       23    23456666 887522 44 899999999999999998 889


Q ss_pred             eEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEee
Q 021291          245 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFG  290 (314)
Q Consensus       245 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~  290 (314)
                      +..+.+|...|.+++|+|++.+|++|+.||.|++||+.+++.+...
T Consensus       221 ~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~  266 (304)
T 2ynn_A          221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL  266 (304)
T ss_dssp             EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             ceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeec
Confidence            9999999999999999999999999999999999999998877653

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=6.3e-40  Score=276.11  Aligned_cols=270  Identities=16%  Similarity=0.219  Sum_probs=216.5

Q ss_pred             ceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEE
Q 021291           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (314)
Q Consensus        10 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~   89 (314)
                      ....+.+|.++|++++|+|++++|++|+.||+|+|||+.+++....+.+|...  |.+++|+|  ++++|++|+.|++|+
T Consensus       100 ~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~--V~~v~~~~--~~~~l~sgs~D~~i~  175 (410)
T 1vyh_C          100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDS--VQDISFDH--SGKLLASCSADMTIK  175 (410)
T ss_dssp             CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSC--EEEEEECT--TSSEEEEEETTSCCC
T ss_pred             ceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCc--EEEEEEcC--CCCEEEEEeCCCeEE
Confidence            45678999999999999999999999999999999999999999999999855  99999999  999999999999999


Q ss_pred             EEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCceEE
Q 021291           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMA  165 (314)
Q Consensus        90 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~  165 (314)
                      +||+.++++..  .+..+........+.+... ........+...+|++..+.... .+.+|..    ++++|++..++ 
T Consensus       176 iwd~~~~~~~~--~~~~h~~~V~~v~~~p~~~-~l~s~s~D~~i~~wd~~~~~~~~-~~~~h~~~v~~~~~~~~g~~l~-  250 (410)
T 1vyh_C          176 LWDFQGFECIR--TMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGYCVK-TFTGHREWVRMVRPNQDGTLIA-  250 (410)
T ss_dssp             EEETTSSCEEE--CCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEE-EEECCSSCEEEEEECTTSSEEE-
T ss_pred             EEeCCCCceeE--EEcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcEEE-EEeCCCccEEEEEECCCCCEEE-
Confidence            99999876543  2223333444444444332 22334455677888887766443 3455655    78889886443 


Q ss_pred             EeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCC-----------------CCceEEEEee
Q 021291          166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKS-----------------QGFVNVLAGY  228 (314)
Q Consensus       166 ~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~-----------------~g~~~l~~g~  228 (314)
                       +|+.|+.|++||+++++....+.        +|    ...+.++. |+|+..                 .|. +|++|+
T Consensus       251 -s~s~D~~v~vwd~~~~~~~~~~~--------~h----~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~-~l~sgs  315 (410)
T 1vyh_C          251 -SCSNDQTVRVWVVATKECKAELR--------EH----RHVVECIS-WAPESSYSSISEATGSETKKSGKPGP-FLLSGS  315 (410)
T ss_dssp             -EEETTSCEEEEETTTCCEEEEEC--------CC----SSCEEEEE-ECCSCGGGGGGGCCSCC-------CC-EEEEEE
T ss_pred             -EEcCCCeEEEEECCCCceeeEec--------CC----CceEEEEE-EcCcccccchhhhccccccccCCCCC-EEEEEe
Confidence             67779999999999999888887        56    44788887 998632                 144 899999


Q ss_pred             cCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEee-------eeeeecCCCce
Q 021291          229 EDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFG-------IGFVCDQEGNK  301 (314)
Q Consensus       229 ~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~-------~~~~~~~~~~~  301 (314)
                      .|+.|++||+++ +.++..+.+|...|++++|+|++.+|++|+.||.|++||+.+++.+...       ..++++|++..
T Consensus       316 ~D~~i~iwd~~~-~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~  394 (410)
T 1vyh_C          316 RDKTIKMWDVST-GMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPY  394 (410)
T ss_dssp             TTSEEEEEETTT-TEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSC
T ss_pred             CCCeEEEEECCC-CceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCE
Confidence            999999999998 8899999999999999999999999999999999999999988876653       44557777766


Q ss_pred             ece
Q 021291          302 FGT  304 (314)
Q Consensus       302 ~~~  304 (314)
                      +++
T Consensus       395 l~s  397 (410)
T 1vyh_C          395 VVT  397 (410)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1e-38  Score=262.26  Aligned_cols=271  Identities=15%  Similarity=0.223  Sum_probs=213.5

Q ss_pred             CCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC
Q 021291            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (314)
Q Consensus         7 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg   86 (314)
                      +.+..++|++|.+.|++++|+|++++|++|+.||+|+|||+.+++.+..+..|...  |.+++|+|  ++++|++++.|+
T Consensus        44 ~~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~--v~~~~~s~--~~~~l~s~~~d~  119 (340)
T 1got_B           44 QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSW--VMTCAYAP--SGNYVACGGLDN  119 (340)
T ss_dssp             CCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSC--EEEEEECT--TSSEEEEEETTC
T ss_pred             cchhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCcc--EEEEEECC--CCCEEEEEeCCC
Confidence            34678899999999999999999999999999999999999999999999988854  99999999  999999999999


Q ss_pred             eEEEEeCCCCCCCCCCeeeeec--ceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCC
Q 021291           87 TVKCWDIENGGLSSNPSLTIKT--NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEG  160 (314)
Q Consensus        87 ~v~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  160 (314)
                      .|++||+.+.+........+..  .....+.+..  ..........+...+|++...... ..+.+|..    ++|+|++
T Consensus       120 ~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~l~s~s~d~~i~~wd~~~~~~~-~~~~~h~~~v~~~~~~~~~  196 (340)
T 1got_B          120 ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD--DNQIVTSSGDTTCALWDIETGQQT-TTFTGHTGDVMSLSLAPDT  196 (340)
T ss_dssp             EEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEE--TTEEEEEETTSCEEEEETTTTEEE-EEECCCSSCEEEEEECTTS
T ss_pred             eEEEEECccCCCcceeEEEecCCCccEEEEEECC--CCcEEEEECCCcEEEEECCCCcEE-EEEcCCCCceEEEEECCCC
Confidence            9999999876432211222222  2333333332  222344455677888888776544 34556665    8899998


Q ss_pred             CceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccC
Q 021291          161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (314)
Q Consensus       161 ~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~  240 (314)
                      +.++  +|+.|+.|++||++++.....+.        +|    ...+.+++ |+|+   +. +|++|+.||.|++||++.
T Consensus       197 ~~l~--sg~~d~~v~~wd~~~~~~~~~~~--------~h----~~~v~~v~-~~p~---~~-~l~s~s~d~~v~iwd~~~  257 (340)
T 1got_B          197 RLFV--SGACDASAKLWDVREGMCRQTFT--------GH----ESDINAIC-FFPN---GN-AFATGSDDATCRLFDLRA  257 (340)
T ss_dssp             SEEE--EEETTSCEEEEETTTCSEEEEEC--------CC----SSCEEEEE-ECTT---SS-EEEEEETTSCEEEEETTT
T ss_pred             CEEE--EEeCCCcEEEEECCCCeeEEEEc--------CC----cCCEEEEE-EcCC---CC-EEEEEcCCCcEEEEECCC
Confidence            6433  67779999999999999888887        66    44688887 9998   44 899999999999999997


Q ss_pred             CCCceEeee--cCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEee-------eeeeecCCCceece
Q 021291          241 PGIPLTAMK--VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFG-------IGFVCDQEGNKFGT  304 (314)
Q Consensus       241 ~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~-------~~~~~~~~~~~~~~  304 (314)
                       ++.+..+.  .+...|++++|+|++++|++|+.||.|++||+.+++.+...       ..++++|+|..+++
T Consensus       258 -~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s  329 (340)
T 1got_B          258 -DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVAT  329 (340)
T ss_dssp             -TEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEE
T ss_pred             -CcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEE
Confidence             66665554  23357999999999999999999999999999988876653       33567788876655

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.9e-39  Score=264.30  Aligned_cols=269  Identities=16%  Similarity=0.187  Sum_probs=207.1

Q ss_pred             CCceEEecCCCCceeEEEEccC----CCEEEEecCCCeEEEEeCCCCeE--EEEEeccCCcccEEEEEEcccCCCCeEEE
Q 021291            8 PDPVAVLRGHRASVTDVCFHQT----KPILFAGTTGGELRIWDTVQHRT--VSSSWVHSAAHGIVSVATGPSIGLNKVIS   81 (314)
Q Consensus         8 ~~~~~~l~~h~~~v~~~~~~~~----~~~l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s   81 (314)
                      +...+.+++|.+.|++++|+|+    +.+|+||+.|++|+|||+.+++.  ...+.+|...  |.+++|++  ++..+++
T Consensus        22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~--v~~~~~~~--~~~~l~s   97 (321)
T 3ow8_A           22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLG--VVSVDISH--TLPIAAS   97 (321)
T ss_dssp             EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC--EEEEEECS--SSSEEEE
T ss_pred             hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCC--EEEEEECC--CCCEEEE
Confidence            3456778899999999999974    67999999999999999987654  4467788844  99999999  9999999


Q ss_pred             eecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceec
Q 021291           82 QGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVP  157 (314)
Q Consensus        82 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  157 (314)
                      ++.|++|++||+++++...  .+...........+++.... .......+...+|++......... ..+..    ++|+
T Consensus        98 ~s~D~~i~lWd~~~~~~~~--~~~~~~~~~~~~~~spdg~~-l~~g~~dg~v~i~~~~~~~~~~~~-~~~~~~v~~~~~s  173 (321)
T 3ow8_A           98 SSLDAHIRLWDLENGKQIK--SIDAGPVDAWTLAFSPDSQY-LATGTHVGKVNIFGVESGKKEYSL-DTRGKFILSIAYS  173 (321)
T ss_dssp             EETTSEEEEEETTTTEEEE--EEECCTTCCCCEEECTTSSE-EEEECTTSEEEEEETTTCSEEEEE-ECSSSCEEEEEEC
T ss_pred             EeCCCcEEEEECCCCCEEE--EEeCCCccEEEEEECCCCCE-EEEEcCCCcEEEEEcCCCceeEEe-cCCCceEEEEEEC
Confidence            9999999999999886533  22222222333334333221 222333455677777766544332 23332    8999


Q ss_pred             cCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEE
Q 021291          158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD  237 (314)
Q Consensus       158 ~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd  237 (314)
                      |+++.++  +|+.|+.|++||+++++.+..+.        +|.    ..+.+++ |+|+   ++ +|++|+.|+.|++||
T Consensus       174 pdg~~la--sg~~dg~i~iwd~~~~~~~~~~~--------~h~----~~v~~l~-~spd---~~-~l~s~s~dg~i~iwd  234 (321)
T 3ow8_A          174 PDGKYLA--SGAIDGIINIFDIATGKLLHTLE--------GHA----MPIRSLT-FSPD---SQ-LLVTASDDGYIKIYD  234 (321)
T ss_dssp             TTSSEEE--EEETTSCEEEEETTTTEEEEEEC--------CCS----SCCCEEE-ECTT---SC-EEEEECTTSCEEEEE
T ss_pred             CCCCEEE--EEcCCCeEEEEECCCCcEEEEEc--------ccC----CceeEEE-EcCC---CC-EEEEEcCCCeEEEEE
Confidence            9997544  57779999999999999988887        663    4677787 9998   55 899999999999999


Q ss_pred             ccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEee-------eeeeecCCCceece
Q 021291          238 IRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFG-------IGFVCDQEGNKFGT  304 (314)
Q Consensus       238 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~-------~~~~~~~~~~~~~~  304 (314)
                      ++. +..+..+.+|...|.+++|+|++.+|++++.|+.|++||+++++.+...       ..+++++++..+++
T Consensus       235 ~~~-~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s  307 (321)
T 3ow8_A          235 VQH-ANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVS  307 (321)
T ss_dssp             TTT-CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             CCC-cceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEE
Confidence            998 7888999999999999999999999999999999999999999887653       44567787776654

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=3.3e-39  Score=264.90  Aligned_cols=245  Identities=13%  Similarity=0.121  Sum_probs=188.8

Q ss_pred             CCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEE----EeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEE
Q 021291           16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS----SWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW   91 (314)
Q Consensus        16 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iw   91 (314)
                      .|...|.+++|+|++ .|++|+.||+|+|||+++++.+..    +.+|.  ..|.+++|+|  ++++|++|+.|++|++|
T Consensus        80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~--~~V~~v~~sp--dg~~l~sgs~d~~i~iw  154 (344)
T 4gqb_B           80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHD--DIVSTVSVLS--SGTQAVSGSKDICIKVW  154 (344)
T ss_dssp             EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCS--SCEEEEEECT--TSSEEEEEETTSCEEEE
T ss_pred             ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCC--CCEEEEEECC--CCCEEEEEeCCCeEEEE
Confidence            366789999999986 788999999999999998865433    34677  4599999999  99999999999999999


Q ss_pred             eCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecC-CCCCC----ceeccCCCceEEE
Q 021291           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDS-LCDSK----DDVPAEGPKYMAV  166 (314)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~  166 (314)
                      |+++++++.  .+..+........+++............+...+|+++..+...... ..+..    ++|+|++..+++ 
T Consensus       155 d~~~~~~~~--~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~-  231 (344)
T 4gqb_B          155 DLAQQVVLS--SYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFV-  231 (344)
T ss_dssp             ETTTTEEEE--EECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEE-
T ss_pred             ECCCCcEEE--EEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceE-
Confidence            999987644  3333444455555555544444455566788899998776554432 22322    889998877765 


Q ss_pred             eecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceE
Q 021291          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (314)
Q Consensus       167 ~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~  246 (314)
                      +|+.|+.|++||+++++++..+.        +|    ...+.+++ |+|+   +..+|++|+.|++|+|||+++ ++ +.
T Consensus       232 sg~~dg~v~~wd~~~~~~~~~~~--------~h----~~~v~~v~-fsp~---g~~~lasgs~D~~i~vwd~~~-~~-~~  293 (344)
T 4gqb_B          232 FGDENGTVSLVDTKSTSCVLSSA--------VH----SQCVTGLV-FSPH---SVPFLASLSEDCSLAVLDSSL-SE-LF  293 (344)
T ss_dssp             EEETTSEEEEEESCC--CCEEEE--------CC----SSCEEEEE-ECSS---SSCCEEEEETTSCEEEECTTC-CE-EE
T ss_pred             EeccCCcEEEEECCCCcEEEEEc--------CC----CCCEEEEE-EccC---CCeEEEEEeCCCeEEEEECCC-Cc-EE
Confidence            67779999999999999999888        77    44788887 9998   433899999999999999987 54 45


Q ss_pred             eeecCCcceEEEEEeCCCC-eEEEecCCCcEEEEecCCCee
Q 021291          247 AMKVHLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHSTY  286 (314)
Q Consensus       247 ~~~~h~~~v~~~~~~~~~~-~l~s~s~dg~i~iw~~~~~~~  286 (314)
                      .+.+|.+.|++++|+|++. +|+|+|.||+|++|++.+...
T Consensus       294 ~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~  334 (344)
T 4gqb_B          294 RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL  334 (344)
T ss_dssp             EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred             EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence            6789999999999999986 467999999999999987643

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.1e-38  Score=266.13  Aligned_cols=277  Identities=16%  Similarity=0.242  Sum_probs=212.1

Q ss_pred             CCCCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeec
Q 021291            5 PPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (314)
Q Consensus         5 ~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (314)
                      |....+.++|+||.+.|++++|+|++++|++|+.||+|+|||+.+++....+..|...  |.+++|+|  ++++|++|+.
T Consensus        53 ~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~--v~~~~~s~--~g~~las~~~  128 (380)
T 3iz6_a           53 PTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPW--VMECAFAP--NGQSVACGGL  128 (380)
T ss_dssp             CCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTT--CCCCEECT--TSSEEEECCS
T ss_pred             cceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCC--EEEEEECC--CCCEEEEeeC
Confidence            4445678899999999999999999999999999999999999999999999999855  99999999  9999999999


Q ss_pred             CCeEEEEeCCCCCCC-----CCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeec----CCCCCC--
Q 021291           85 DGTVKCWDIENGGLS-----SNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTD----SLCDSK--  153 (314)
Q Consensus        85 dg~v~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--  153 (314)
                      |+.+++||+.+....     ....+..+......+.+.+............+...+|++..+......    ..+|..  
T Consensus       129 d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v  208 (380)
T 3iz6_a          129 DSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADV  208 (380)
T ss_dssp             SSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCE
T ss_pred             CCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCe
Confidence            999999999764311     111222333333334444433333445556677888998877654332    245555  


Q ss_pred             --ceeccCCCceEEEeecCcCeEEEEecC-CCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecC
Q 021291          154 --DDVPAEGPKYMAVAGEQLSEVEIWDLN-TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED  230 (314)
Q Consensus       154 --~~~~~~~~~~~~~~g~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~d  230 (314)
                        ++|++.+..+++ +|+.|++|++||++ ..+.+..+.        +|    ...+.++. |+|+   +. +|++|+.|
T Consensus       209 ~~~~~~~~~~~~l~-sgs~D~~v~~wd~~~~~~~~~~~~--------~h----~~~v~~v~-~~p~---~~-~l~s~s~D  270 (380)
T 3iz6_a          209 LSLSINSLNANMFI-SGSCDTTVRLWDLRITSRAVRTYH--------GH----EGDINSVK-FFPD---GQ-RFGTGSDD  270 (380)
T ss_dssp             EEEEECSSSCCEEE-EEETTSCEEEEETTTTCCCCEEEC--------CC----SSCCCEEE-ECTT---SS-EEEEECSS
T ss_pred             EEEEeecCCCCEEE-EEECCCeEEEEECCCCCcceEEEC--------Cc----CCCeEEEE-EecC---CC-eEEEEcCC
Confidence              667664444554 67789999999998 446666676        67    44677887 9998   55 89999999


Q ss_pred             CcEEEEEccCCCCceEeeecCC-------cceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe-----------eee
Q 021291          231 GSILVWDIRNPGIPLTAMKVHL-------EPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF-----------GIG  292 (314)
Q Consensus       231 g~i~vwd~~~~~~~~~~~~~h~-------~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~-----------~~~  292 (314)
                      |+|++||+++ +.++..+..+.       ..|++++|+|++.+|++|+.||.|++||+..++.+..           +..
T Consensus       271 ~~i~lwd~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~  349 (380)
T 3iz6_a          271 GTCRLFDMRT-GHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISC  349 (380)
T ss_dssp             SCEEEEETTT-TEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCE
T ss_pred             CeEEEEECCC-CcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEE
Confidence            9999999998 77777766543       2489999999999999999999999999988876653           234


Q ss_pred             eeecCCCceece
Q 021291          293 FVCDQEGNKFGT  304 (314)
Q Consensus       293 ~~~~~~~~~~~~  304 (314)
                      ++++|+|..+++
T Consensus       350 l~~s~dg~~l~s  361 (380)
T 3iz6_a          350 LGLSSDGSALCT  361 (380)
T ss_dssp             EEECSSSSEEEE
T ss_pred             EEECCCCCEEEE
Confidence            567788877665

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.5e-38  Score=267.77  Aligned_cols=249  Identities=18%  Similarity=0.310  Sum_probs=200.2

Q ss_pred             CCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC
Q 021291            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (314)
Q Consensus         7 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg   86 (314)
                      .++.++++++|.+.|++++|+|++++|++|+.||+|+|||+.+++++..+.+|...  |.+++|+|  ++++|++|+.|+
T Consensus       139 ~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~--V~~v~~~p--~~~~l~s~s~D~  214 (410)
T 1vyh_C          139 TGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHN--VSSVSIMP--NGDHIVSASRDK  214 (410)
T ss_dssp             TCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSC--EEEEEECS--SSSEEEEEETTS
T ss_pred             CCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCC--EEEEEEeC--CCCEEEEEeCCC
Confidence            35678899999999999999999999999999999999999999999999999855  99999999  999999999999


Q ss_pred             eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCC-
Q 021291           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGP-  161 (314)
Q Consensus        87 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-  161 (314)
                      +|++||++++.+..  .+..+........+++... ........+...+|++....... .+.+|..    ++|+|++. 
T Consensus       215 ~i~~wd~~~~~~~~--~~~~h~~~v~~~~~~~~g~-~l~s~s~D~~v~vwd~~~~~~~~-~~~~h~~~v~~~~~~~~~~~  290 (410)
T 1vyh_C          215 TIKMWEVQTGYCVK--TFTGHREWVRMVRPNQDGT-LIASCSNDQTVRVWVVATKECKA-ELREHRHVVECISWAPESSY  290 (410)
T ss_dssp             EEEEEETTTCCEEE--EEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEE-EECCCSSCEEEEEECCSCGG
T ss_pred             eEEEEECCCCcEEE--EEeCCCccEEEEEECCCCC-EEEEEcCCCeEEEEECCCCceee-EecCCCceEEEEEEcCcccc
Confidence            99999999987543  2222222333333322221 22334445677888887765433 3455555    78888632 


Q ss_pred             ------------------ceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceE
Q 021291          162 ------------------KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVN  223 (314)
Q Consensus       162 ------------------~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~  223 (314)
                                        .++ ++|+.|+.|++||++++.++..+.        +|    ...+.++. |+|+   |+ +
T Consensus       291 ~~~~~~~~~~~~~~~~~g~~l-~sgs~D~~i~iwd~~~~~~~~~~~--------~h----~~~v~~v~-~~~~---g~-~  352 (410)
T 1vyh_C          291 SSISEATGSETKKSGKPGPFL-LSGSRDKTIKMWDVSTGMCLMTLV--------GH----DNWVRGVL-FHSG---GK-F  352 (410)
T ss_dssp             GGGGGCCSCC-------CCEE-EEEETTSEEEEEETTTTEEEEEEE--------CC----SSCEEEEE-ECSS---SS-C
T ss_pred             cchhhhccccccccCCCCCEE-EEEeCCCeEEEEECCCCceEEEEE--------CC----CCcEEEEE-EcCC---CC-E
Confidence                              233 367789999999999999998888        67    34678887 9998   55 8


Q ss_pred             EEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecC
Q 021291          224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD  282 (314)
Q Consensus       224 l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~  282 (314)
                      |++|+.||.|++||+++ ++++..+.+|...|++++|+|++.+|++|+.||.|++|+++
T Consensus       353 l~s~s~D~~i~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          353 ILSCADDKTLRVWDYKN-KRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             EEEEETTTEEEEECCTT-SCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             EEEEeCCCeEEEEECCC-CceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence            99999999999999988 88899999999999999999999999999999999999864

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.1e-37  Score=253.90  Aligned_cols=245  Identities=17%  Similarity=0.228  Sum_probs=200.5

Q ss_pred             ceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEE
Q 021291           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (314)
Q Consensus        10 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~   89 (314)
                      +...+.+|...|.+++|++++.++++++.|++|++||+.+++++..+..+...  +.+++|+|  ++++|++++.||.|+
T Consensus        72 ~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~--~~~~~~sp--dg~~l~~g~~dg~v~  147 (321)
T 3ow8_A           72 LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVD--AWTLAFSP--DSQYLATGTHVGKVN  147 (321)
T ss_dssp             EEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTC--CCCEEECT--TSSEEEEECTTSEEE
T ss_pred             eeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCcc--EEEEEECC--CCCEEEEEcCCCcEE
Confidence            35578999999999999999999999999999999999999999999888744  99999999  999999999999999


Q ss_pred             EEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCceEE
Q 021291           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMA  165 (314)
Q Consensus        90 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~  165 (314)
                      +||+++++...  .+..+........+++.+.. .......+...+|++...+... .+.+|..    ++|+|+++.++ 
T Consensus       148 i~~~~~~~~~~--~~~~~~~~v~~~~~spdg~~-lasg~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~l~~spd~~~l~-  222 (321)
T 3ow8_A          148 IFGVESGKKEY--SLDTRGKFILSIAYSPDGKY-LASGAIDGIINIFDIATGKLLH-TLEGHAMPIRSLTFSPDSQLLV-  222 (321)
T ss_dssp             EEETTTCSEEE--EEECSSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTTEEEE-EECCCSSCCCEEEECTTSCEEE-
T ss_pred             EEEcCCCceeE--EecCCCceEEEEEECCCCCE-EEEEcCCCeEEEEECCCCcEEE-EEcccCCceeEEEEcCCCCEEE-
Confidence            99999876432  22222233334444443322 2233445667888887765443 4455654    89999987443 


Q ss_pred             EeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCce
Q 021291          166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL  245 (314)
Q Consensus       166 ~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~  245 (314)
                       +|+.|+.|++||+++++....+.        +|    ...+.+++ |+|+   +. +|++|+.|+.|++||+++ ++++
T Consensus       223 -s~s~dg~i~iwd~~~~~~~~~~~--------~h----~~~v~~~~-~sp~---~~-~l~s~s~D~~v~iwd~~~-~~~~  283 (321)
T 3ow8_A          223 -TASDDGYIKIYDVQHANLAGTLS--------GH----ASWVLNVA-FCPD---DT-HFVSSSSDKSVKVWDVGT-RTCV  283 (321)
T ss_dssp             -EECTTSCEEEEETTTCCEEEEEC--------CC----SSCEEEEE-ECTT---SS-EEEEEETTSCEEEEETTT-TEEE
T ss_pred             -EEcCCCeEEEEECCCcceeEEEc--------CC----CCceEEEE-ECCC---CC-EEEEEeCCCcEEEEeCCC-CEEE
Confidence             67789999999999999888887        67    44788887 9998   55 899999999999999998 8899


Q ss_pred             EeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecC
Q 021291          246 TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD  282 (314)
Q Consensus       246 ~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~  282 (314)
                      ..+.+|...|++++|+|++.+|++++.||.|++||..
T Consensus       284 ~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          284 HTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             EEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            9999999999999999999999999999999999964

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.1e-38  Score=263.66  Aligned_cols=252  Identities=13%  Similarity=0.144  Sum_probs=185.5

Q ss_pred             eEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEE----EEeccCCcccEEEEEEcccCCCCeEEEeecCC
Q 021291           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVS----SSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (314)
Q Consensus        11 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg   86 (314)
                      .....+|...|++++|+|++. +++++.||+|+|||+.+++...    ...+|.  ..|.+++|+|  ++++|++++.|+
T Consensus        87 ~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~--~~V~~v~~sp--dg~~l~sgs~dg  161 (357)
T 4g56_B           87 CTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHD--DIVKTLSVFS--DGTQAVSGGKDF  161 (357)
T ss_dssp             CSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCS--SCEEEEEECS--SSSEEEEEETTS
T ss_pred             ecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCC--CCEEEEEECC--CCCEEEEEeCCC
Confidence            344567999999999999985 5567889999999998876543    233566  5599999999  999999999999


Q ss_pred             eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeec-CCCCCC----ceeccCCC
Q 021291           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTD-SLCDSK----DDVPAEGP  161 (314)
Q Consensus        87 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~  161 (314)
                      +|++||+++++...  .+..+........+++............+...+|+++..+..... ...+..    ++|+|++.
T Consensus       162 ~v~iwd~~~~~~~~--~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~  239 (357)
T 4g56_B          162 SVKVWDLSQKAVLK--SYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKD  239 (357)
T ss_dssp             CEEEEETTTTEEEE--EECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTST
T ss_pred             eEEEEECCCCcEEE--EEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhccc
Confidence            99999999887543  333334444444555444444445556677888888776644332 233333    88999987


Q ss_pred             ceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCC
Q 021291          162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP  241 (314)
Q Consensus       162 ~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~  241 (314)
                      .+++ +|+.|+.|++||+++++.+..+.        +|    ...+.+++ |+|+   +..+|++|+.|++|+|||+++ 
T Consensus       240 ~~la-~g~~d~~i~~wd~~~~~~~~~~~--------~~----~~~v~~l~-~sp~---~~~~lasgs~D~~i~iwd~~~-  301 (357)
T 4g56_B          240 DTFA-CGDETGNVSLVNIKNPDSAQTSA--------VH----SQNITGLA-YSYH---SSPFLASISEDCTVAVLDADF-  301 (357)
T ss_dssp             TEEE-EEESSSCEEEEESSCGGGCEEEC--------CC----SSCEEEEE-ECSS---SSCCEEEEETTSCEEEECTTS-
T ss_pred             ceEE-EeecccceeEEECCCCcEeEEEe--------cc----ceeEEEEE-EcCC---CCCEEEEEeCCCEEEEEECCC-
Confidence            7766 57779999999999999988887        66    44688887 9998   332899999999999999997 


Q ss_pred             CCceEeeecCCcceEEEEEeC-CCCeEEEecCCCcEEEEecCCCeeeE
Q 021291          242 GIPLTAMKVHLEPVLCLSIDE-SCNGGISGGADQKIVLYNLDHSTYVL  288 (314)
Q Consensus       242 ~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~i~iw~~~~~~~~~  288 (314)
                      ++++.. .+|.+.|++|+|+| ++.+|+|+|.||.|++|++....+..
T Consensus       302 ~~~~~~-~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~~  348 (357)
T 4g56_B          302 SEVFRD-LSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRTE  348 (357)
T ss_dssp             CEEEEE-CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC------
T ss_pred             CcEeEE-CCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccc
Confidence            666654 47999999999998 78999999999999999998765443

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.7e-36  Score=250.28  Aligned_cols=273  Identities=14%  Similarity=0.220  Sum_probs=211.3

Q ss_pred             CCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC
Q 021291            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (314)
Q Consensus         7 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg   86 (314)
                      ..+..++|++|.+.|++++|+|++++|+||+.||+|+|||..+++....+..|..  .|.+++|+|  ++..|++++.|+
T Consensus        53 ~~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~--~v~~~~~sp--~g~~lasg~~d~  128 (354)
T 2pbi_B           53 VMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCT--WVMACAYAP--SGCAIACGGLDN  128 (354)
T ss_dssp             CCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSS--CCCEEEECT--TSSEEEEESTTS
T ss_pred             ccEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCC--CEEEEEECC--CCCEEEEeeCCC
Confidence            3467889999999999999999999999999999999999999999988888874  499999999  999999999999


Q ss_pred             eEEEEeCCCCCCCC----CCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceecc
Q 021291           87 TVKCWDIENGGLSS----NPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPA  158 (314)
Q Consensus        87 ~v~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  158 (314)
                      .+++|++.......    ...+..+......+.+.+... ........+...+|++....... .+.+|..    ++++|
T Consensus       129 ~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~t~s~D~~v~lwd~~~~~~~~-~~~~h~~~v~~~~~~~  206 (354)
T 2pbi_B          129 KCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM-QILTASGDGTCALWDVESGQLLQ-SFHGHGADVLCLDLAP  206 (354)
T ss_dssp             EEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEE-EEECCSSCEEEEEECC
T ss_pred             CEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCeEEE-EEcCCCCCeEEEEEEe
Confidence            99999987543211    112233333444444444332 22334445677888887776443 3455655    66777


Q ss_pred             CCC-ceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEE
Q 021291          159 EGP-KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD  237 (314)
Q Consensus       159 ~~~-~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd  237 (314)
                      +.. ..++ +|+.|+.|++||+++++++..+.        +|    ...+.++. |+|+   +. +|++|+.|++|++||
T Consensus       207 ~~~g~~l~-sgs~Dg~v~~wd~~~~~~~~~~~--------~h----~~~v~~v~-~~p~---~~-~l~s~s~D~~v~lwd  268 (354)
T 2pbi_B          207 SETGNTFV-SGGCDKKAMVWDMRSGQCVQAFE--------TH----ESDVNSVR-YYPS---GD-AFASGSDDATCRLYD  268 (354)
T ss_dssp             CSSCCEEE-EEETTSCEEEEETTTCCEEEEEC--------CC----SSCEEEEE-ECTT---SS-EEEEEETTSCEEEEE
T ss_pred             CCCCCEEE-EEeCCCeEEEEECCCCcEEEEec--------CC----CCCeEEEE-EeCC---CC-EEEEEeCCCeEEEEE
Confidence            532 3343 67789999999999999988887        66    44788887 9998   44 899999999999999


Q ss_pred             ccCCCCceEeeecC--CcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe-------eeeeeecCCCceece
Q 021291          238 IRNPGIPLTAMKVH--LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF-------GIGFVCDQEGNKFGT  304 (314)
Q Consensus       238 ~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~-------~~~~~~~~~~~~~~~  304 (314)
                      ++. ...+..+..+  ...+.+++|+|++.+|++|+.|+.|++||+.+++.+..       +..++++|+|..+++
T Consensus       269 ~~~-~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s  343 (354)
T 2pbi_B          269 LRA-DREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCS  343 (354)
T ss_dssp             TTT-TEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEE
T ss_pred             CCC-CcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEE
Confidence            997 6666555533  34789999999999999999999999999998887664       344567888877765

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2.7e-37  Score=249.06  Aligned_cols=257  Identities=16%  Similarity=0.161  Sum_probs=190.4

Q ss_pred             eEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCC--CeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ--HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (314)
Q Consensus        11 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v   88 (314)
                      +..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+  .+.+..+.+|...  |.+++|++..++++|++|+.|++|
T Consensus         2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~--V~~v~~s~~~~g~~l~s~s~D~~v   79 (297)
T 2pm7_B            2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGP--VWRVDWAHPKFGTILASCSYDGKV   79 (297)
T ss_dssp             CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSC--EEEEEECCGGGCSEEEEEETTTEE
T ss_pred             ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCC--eEEEEecCCCcCCEEEEEcCCCEE
Confidence            457889999999999999999999999999999999874  3677889999855  999999862237899999999999


Q ss_pred             EEEeCCCCCCCCCCeeeeecceeeEEEeeeee-ccccccccCCCCcceeeccCCce-eeecCCCCCC----ceeccCC--
Q 021291           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK-EPYANAKQANEPKDCYEREVGET-VDTDSLCDSK----DDVPAEG--  160 (314)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~--  160 (314)
                      ++||+++++......+..+........+++.. ..........+...+|++..... ....+.+|..    ++|+|++  
T Consensus        80 ~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~  159 (297)
T 2pm7_B           80 MIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE  159 (297)
T ss_dssp             EEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC--
T ss_pred             EEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccc
Confidence            99999987533211222233444445555432 22333445556677888766532 1233445655    7888873  


Q ss_pred             ----------CceEEEeecCcCeEEEEecCCCc----eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEE
Q 021291          161 ----------PKYMAVAGEQLSEVEIWDLNTAE----RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA  226 (314)
Q Consensus       161 ----------~~~~~~~g~~d~~i~vwd~~~~~----~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~  226 (314)
                                ..+++ +|+.|++|++||+++++    ....+.        +|    ...+.+++ |+|++..+. +|++
T Consensus       160 ~~~~~~~~~~~~~l~-sgs~D~~v~lwd~~~~~~~~~~~~~l~--------~H----~~~V~~v~-~sp~~~~~~-~las  224 (297)
T 2pm7_B          160 EDGEHNGTKESRKFV-TGGADNLVKIWKYNSDAQTYVLESTLE--------GH----SDWVRDVA-WSPTVLLRS-YMAS  224 (297)
T ss_dssp             ----------CCEEE-EEETTSCEEEEEEETTTTEEEEEEEEC--------CC----SSCEEEEE-ECCCCSSSE-EEEE
T ss_pred             ccccCCCCCCcceEE-EEcCCCcEEEEEEcCCCceEEEEEEec--------CC----CCceEEEE-ECCCCCCce-EEEE
Confidence                      23444 67789999999998765    444555        66    45788898 999842234 8999


Q ss_pred             eecCCcEEEEEccCCCCc--eEee--ecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCC
Q 021291          227 GYEDGSILVWDIRNPGIP--LTAM--KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS  284 (314)
Q Consensus       227 g~~dg~i~vwd~~~~~~~--~~~~--~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~  284 (314)
                      ++.|++|++||++.....  ...+  ..|...|.+++|+|++++|++++.||.|++|+....
T Consensus       225 ~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~  286 (297)
T 2pm7_B          225 VSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE  286 (297)
T ss_dssp             EETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred             EECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCC
Confidence            999999999999863221  2233  467889999999999999999999999999998744

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.2e-36  Score=245.59  Aligned_cols=270  Identities=20%  Similarity=0.283  Sum_probs=209.6

Q ss_pred             CCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCe
Q 021291            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (314)
Q Consensus         8 ~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (314)
                      ..+..++.+|.+.|++++|+|++++|++|+.||.|++|++.+++....+.+|...  |.+++|+|  ++++|++++.|+.
T Consensus        13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~--v~~~~~~~--~~~~l~s~~~d~~   88 (312)
T 4ery_A           13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--ISDVAWSS--DSNLLVSASDDKT   88 (312)
T ss_dssp             CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC--EEEEEECT--TSSEEEEEETTSE
T ss_pred             ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCc--eEEEEEcC--CCCEEEEECCCCE
Confidence            3567889999999999999999999999999999999999999999999999854  99999999  9999999999999


Q ss_pred             EEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCce
Q 021291           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKY  163 (314)
Q Consensus        88 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  163 (314)
                      |++||+++++...  .+..+......+.+++... ........+...+|++....... .+..|..    ++|+|+++.+
T Consensus        89 i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l  164 (312)
T 4ery_A           89 LKIWDVSSGKCLK--TLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLK-TLPAHSDPVSAVHFNRDGSLI  164 (312)
T ss_dssp             EEEEETTTCCEEE--EEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCCEEE-EECCCSSCEEEEEECTTSSEE
T ss_pred             EEEEECCCCcEEE--EEcCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCEEEE-EecCCCCcEEEEEEcCCCCEE
Confidence            9999999886543  2333333444444444322 22334455677888887766443 3444544    8899998754


Q ss_pred             EEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCC
Q 021291          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI  243 (314)
Q Consensus       164 ~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~  243 (314)
                      +  +++.|+.|++||+++++.+..+..       .+    ...+..+. |+|+   ++ +|++++.|+.|++||+++ ++
T Consensus       165 ~--~~~~d~~i~~wd~~~~~~~~~~~~-------~~----~~~~~~~~-~~~~---~~-~l~~~~~d~~i~iwd~~~-~~  225 (312)
T 4ery_A          165 V--SSSYDGLCRIWDTASGQCLKTLID-------DD----NPPVSFVK-FSPN---GK-YILAATLDNTLKLWDYSK-GK  225 (312)
T ss_dssp             E--EEETTSCEEEEETTTCCEEEEECC-------SS----CCCEEEEE-ECTT---SS-EEEEEETTTEEEEEETTT-TE
T ss_pred             E--EEeCCCcEEEEECCCCceeeEEec-------cC----CCceEEEE-ECCC---CC-EEEEEcCCCeEEEEECCC-Cc
Confidence            3  577799999999999988777652       22    34566776 9998   55 899999999999999998 88


Q ss_pred             ceEeeecCCcceEE--EEE-eCCCCeEEEecCCCcEEEEecCCCeeeEee-------eeeeecCCCceece
Q 021291          244 PLTAMKVHLEPVLC--LSI-DESCNGGISGGADQKIVLYNLDHSTYVLFG-------IGFVCDQEGNKFGT  304 (314)
Q Consensus       244 ~~~~~~~h~~~v~~--~~~-~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~-------~~~~~~~~~~~~~~  304 (314)
                      ++..+.+|...+..  ..+ .+++.+|++|+.||.|++||+++++.+...       ...+++|++..+++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s  296 (312)
T 4ery_A          226 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS  296 (312)
T ss_dssp             EEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEE
T ss_pred             EEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEE
Confidence            88888888765433  233 467889999999999999999999877654       34567777776654

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.1e-36  Score=247.98  Aligned_cols=232  Identities=15%  Similarity=0.224  Sum_probs=185.9

Q ss_pred             CceEEecCCCCceeEEEEccCC-CEEEEecCCCeEEEEeCCC-----CeEEEEEeccCCcccEEEEEEcccCCCCeEEEe
Q 021291            9 DPVAVLRGHRASVTDVCFHQTK-PILFAGTTGGELRIWDTVQ-----HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ   82 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iwd~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~   82 (314)
                      .+..+|+||.+.|++++|+|++ ++|++|+.|++|++|++..     +..+..+.+|...  |.+++|+|  ++++|+++
T Consensus         8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~--v~~~~~s~--dg~~l~s~   83 (319)
T 3frx_A            8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI--VQDCTLTA--DGAYALSA   83 (319)
T ss_dssp             EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSC--EEEEEECT--TSSEEEEE
T ss_pred             EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCccc--EEEEEECC--CCCEEEEE
Confidence            5677899999999999999954 8999999999999999863     3456788899855  99999999  99999999


Q ss_pred             ecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCc
Q 021291           83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPK  162 (314)
Q Consensus        83 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (314)
                      +.|++|++||+++++...    .+..+......                                      ++|+|++..
T Consensus        84 s~D~~v~~wd~~~~~~~~----~~~~h~~~v~~--------------------------------------~~~~~~~~~  121 (319)
T 3frx_A           84 SWDKTLRLWDVATGETYQ----RFVGHKSDVMS--------------------------------------VDIDKKASM  121 (319)
T ss_dssp             ETTSEEEEEETTTTEEEE----EEECCSSCEEE--------------------------------------EEECTTSCE
T ss_pred             eCCCEEEEEECCCCCeeE----EEccCCCcEEE--------------------------------------EEEcCCCCE
Confidence            999999999999886432    22222111110                                      568888864


Q ss_pred             eEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCC---CCceEEEEeecCCcEEEEEcc
Q 021291          163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKS---QGFVNVLAGYEDGSILVWDIR  239 (314)
Q Consensus       163 ~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~---~g~~~l~~g~~dg~i~vwd~~  239 (314)
                      ++  +|+.|++|++||++ ++.+..+.        +|    ...+.++. |.|...   ++. .+++++.|+.|++||++
T Consensus       122 l~--s~s~D~~i~vwd~~-~~~~~~~~--------~h----~~~v~~~~-~~~~~~~~~~~~-~l~s~~~d~~i~~wd~~  184 (319)
T 3frx_A          122 II--SGSRDKTIKVWTIK-GQCLATLL--------GH----NDWVSQVR-VVPNEKADDDSV-TIISAGNDKMVKAWNLN  184 (319)
T ss_dssp             EE--EEETTSCEEEEETT-SCEEEEEC--------CC----SSCEEEEE-ECCC------CC-EEEEEETTSCEEEEETT
T ss_pred             EE--EEeCCCeEEEEECC-CCeEEEEe--------cc----CCcEEEEE-EccCCCCCCCcc-EEEEEeCCCEEEEEECC
Confidence            43  67789999999997 45566666        56    44677777 888532   233 79999999999999999


Q ss_pred             CCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe------eeeeeecCCCceece
Q 021291          240 NPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF------GIGFVCDQEGNKFGT  304 (314)
Q Consensus       240 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~------~~~~~~~~~~~~~~~  304 (314)
                      + .+....+.+|...|++++|+|++++|++++.||.|++||+.+++.+..      +..++++|++..++.
T Consensus       185 ~-~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~  254 (319)
T 3frx_A          185 Q-FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAA  254 (319)
T ss_dssp             T-TEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEE
T ss_pred             c-chhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEE
Confidence            8 778888999999999999999999999999999999999999987765      345667788876654

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=6.4e-37  Score=249.03  Aligned_cols=255  Identities=15%  Similarity=0.138  Sum_probs=184.7

Q ss_pred             EEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCe--EEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEE
Q 021291           12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (314)
Q Consensus        12 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~   89 (314)
                      ..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+++  .+..+.+|...  |.+++|++..++++|++|+.|++|+
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~--V~~v~~~~~~~~~~l~s~s~D~~v~   84 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGP--VWQVAWAHPMYGNILASCSYDRKVI   84 (316)
T ss_dssp             -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSC--EEEEEECCGGGSSCEEEEETTSCEE
T ss_pred             eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCcc--EEEEEeCCCCCCCEEEEEECCCEEE
Confidence            3567999999999999999999999999999999998775  46778889855  9999998622478999999999999


Q ss_pred             EEeCCCCCCCCCCeeee--ecceeeEEEeeeee-ccccccccCCCCcceeeccCCce--eeecCCCCCC----ceeccCC
Q 021291           90 CWDIENGGLSSNPSLTI--KTNSYHFCKLSLVK-EPYANAKQANEPKDCYEREVGET--VDTDSLCDSK----DDVPAEG  160 (314)
Q Consensus        90 iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~  160 (314)
                      +||+++++...  ...+  +........+++.. ..........+...+|++.....  ....+.+|..    ++|+|+.
T Consensus        85 iWd~~~~~~~~--~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  162 (316)
T 3bg1_A           85 IWREENGTWEK--SHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAV  162 (316)
T ss_dssp             EECCSSSCCCE--EEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCC
T ss_pred             EEECCCCcceE--EEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcccc
Confidence            99998865322  2233  33344445555432 22333445556777888776532  2344556655    7888873


Q ss_pred             C----------------ceEEEeecCcCeEEEEecCCC---ceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCC-C
Q 021291          161 P----------------KYMAVAGEQLSEVEIWDLNTA---ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQ-G  220 (314)
Q Consensus       161 ~----------------~~~~~~g~~d~~i~vwd~~~~---~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~-g  220 (314)
                      .                .+++ +|+.|++|++||++..   +....+.        +|    ...+.+++ |+|++.. +
T Consensus       163 ~~~~~~~~~~~~~~~~~~~l~-sgs~D~~v~lWd~~~~~~~~~~~~l~--------~h----~~~V~~v~-~sp~~~~~~  228 (316)
T 3bg1_A          163 VPGSLIDHPSGQKPNYIKRFA-SGGCDNLIKLWKEEEDGQWKEEQKLE--------AH----SDWVRDVA-WAPSIGLPT  228 (316)
T ss_dssp             CC------CCSCCCCCCCBEE-CCBTTSBCCEEEECTTSCEEEEECCB--------CC----SSCEEEEE-CCCCSSCSC
T ss_pred             CCccccccccccCccccceEE-EecCCCeEEEEEeCCCCccceeeecc--------cC----CCceEEEE-ecCCCCCCC
Confidence            1                2343 7888999999999755   3445555        66    44788887 9998411 2


Q ss_pred             ceEEEEeecCCcEEEEEccCCC---CceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCe
Q 021291          221 FVNVLAGYEDGSILVWDIRNPG---IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST  285 (314)
Q Consensus       221 ~~~l~~g~~dg~i~vwd~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~  285 (314)
                      . +|++|+.|++|++||++...   .....+..|...|++++|+|++.+|++++.||.|++|+.....
T Consensus       229 ~-~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~g  295 (316)
T 3bg1_A          229 S-TIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDG  295 (316)
T ss_dssp             C-EEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECTTS
T ss_pred             c-eEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECCCC
Confidence            3 89999999999999987521   1234567899999999999999999999999999999987543

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.3e-36  Score=245.87  Aligned_cols=253  Identities=17%  Similarity=0.167  Sum_probs=196.3

Q ss_pred             CCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCe
Q 021291            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (314)
Q Consensus         8 ~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (314)
                      ++.++.+.+|..+|.+++|+|++++|++|+.|++|++||+.+++++..+.+|...  |.+++|+|  ++.+|++|+.|++
T Consensus        45 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~--v~~~~~~~--~~~~l~sgs~D~~  120 (304)
T 2ynn_A           45 QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDY--IRSIAVHP--TKPYVLSGSDDLT  120 (304)
T ss_dssp             TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSC--EEEEEECS--SSSEEEEEETTSC
T ss_pred             CceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCc--EEEEEEcC--CCCEEEEECCCCe
Confidence            4678889999999999999999999999999999999999999999999999855  99999999  9999999999999


Q ss_pred             EEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCce
Q 021291           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKY  163 (314)
Q Consensus        88 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  163 (314)
                      |++||++++.... ..+..+........+++............+...+|++...........++..    ++|+|..+..
T Consensus       121 v~lWd~~~~~~~~-~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  199 (304)
T 2ynn_A          121 VKLWNWENNWALE-QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP  199 (304)
T ss_dssp             EEEEEGGGTTEEE-EEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCC
T ss_pred             EEEEECCCCcchh-hhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCC
Confidence            9999998763211 0222233344444444433333445555677888888766544433344433    6777643322


Q ss_pred             EEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCC
Q 021291          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI  243 (314)
Q Consensus       164 ~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~  243 (314)
                      ++++|+.|++|++||+++++++..+.        +|    ...+.++. |+|+   +. +|++|+.||.|++||+++ ++
T Consensus       200 ~l~s~s~D~~i~iWd~~~~~~~~~~~--------~h----~~~v~~~~-~~p~---~~-~l~s~s~Dg~i~iWd~~~-~~  261 (304)
T 2ynn_A          200 YMITASDDLTIKIWDYQTKSCVATLE--------GH----MSNVSFAV-FHPT---LP-IIISGSEDGTLKIWNSST-YK  261 (304)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEE--------CC----SSCEEEEE-ECSS---SS-EEEEEETTSCEEEEETTT-CC
T ss_pred             EEEEEcCCCeEEEEeCCCCccceeeC--------CC----CCCEEEEE-ECCC---CC-EEEEEcCCCeEEEEECCC-Cc
Confidence            33467789999999999999999988        77    34677887 9998   44 899999999999999998 88


Q ss_pred             ceEeeecCCcceEEEEEeCCCC--eEEEecCCCcEEEEecCCC
Q 021291          244 PLTAMKVHLEPVLCLSIDESCN--GGISGGADQKIVLYNLDHS  284 (314)
Q Consensus       244 ~~~~~~~h~~~v~~~~~~~~~~--~l~s~s~dg~i~iw~~~~~  284 (314)
                      ++..+..|...+++++|+|++.  ++++|+.|| +.+|++...
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~~  303 (304)
T 2ynn_A          262 VEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGND  303 (304)
T ss_dssp             EEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC--
T ss_pred             eeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEeccC
Confidence            9999999999999999988875  477776555 888887653

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.7e-35  Score=242.97  Aligned_cols=269  Identities=15%  Similarity=0.206  Sum_probs=206.4

Q ss_pred             CceEEecCCCCceeEEEEccC-CCEEEEecCCCeEEEEeCCCC-----eEEEEEeccCCcccEEEEEEcccCCCCeEEEe
Q 021291            9 DPVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQH-----RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ   82 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~   82 (314)
                      ++..+|+||.+.|++|+|+|+ +++|+||+.||+|+|||+.+.     .+...+.+|...  |.+++|+|  ++++|+++
T Consensus        29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~--V~~~~~s~--dg~~l~s~  104 (340)
T 4aow_A           29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHF--VSDVVISS--DGQFALSG  104 (340)
T ss_dssp             EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSC--EEEEEECT--TSSEEEEE
T ss_pred             EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCC--EEEEEECC--CCCEEEEE
Confidence            345689999999999999997 689999999999999998764     356778888854  99999999  99999999


Q ss_pred             ecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceecc
Q 021291           83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPA  158 (314)
Q Consensus        83 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  158 (314)
                      +.|+.|++|+........  .............+.... .........+...+|+............+|..    ++|++
T Consensus       105 ~~d~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~  181 (340)
T 4aow_A          105 SWDGTLRLWDLTTGTTTR--RFVGHTKDVLSVAFSSDN-RQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSP  181 (340)
T ss_dssp             ETTSEEEEEETTTTEEEE--EEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECS
T ss_pred             cccccceEEeecccceee--eecCCCCceeEEEEeecC-ccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEcc
Confidence            999999999998775422  112222222222222221 12223334456677777776666666777766    78888


Q ss_pred             CCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEc
Q 021291          159 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI  238 (314)
Q Consensus       159 ~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~  238 (314)
                      ++...++++++.|+.|++||+++++.+..+.        +|    ...+.+++ |+|+   ++ +|++|+.||.|++||+
T Consensus       182 ~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~--------~h----~~~v~~~~-~s~~---~~-~l~s~s~Dg~i~iwd~  244 (340)
T 4aow_A          182 NSSNPIIVSCGWDKLVKVWNLANCKLKTNHI--------GH----TGYLNTVT-VSPD---GS-LCASGGKDGQAMLWDL  244 (340)
T ss_dssp             CSSSCEEEEEETTSCEEEEETTTTEEEEEEC--------CC----SSCEEEEE-ECTT---SS-EEEEEETTCEEEEEET
T ss_pred             CCCCcEEEEEcCCCEEEEEECCCCceeeEec--------CC----CCcEEEEE-ECCC---CC-EEEEEeCCCeEEEEEe
Confidence            8777666678889999999999999988887        66    44788887 9998   55 8999999999999999


Q ss_pred             cCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe----------------eeeeeecCCCcee
Q 021291          239 RNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF----------------GIGFVCDQEGNKF  302 (314)
Q Consensus       239 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~----------------~~~~~~~~~~~~~  302 (314)
                      ++ .+++..+.. ...|.++.|+|++. +++++.|+.|++||++.+..+..                +..++++|+|..+
T Consensus       245 ~~-~~~~~~~~~-~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l  321 (340)
T 4aow_A          245 NE-GKHLYTLDG-GDIINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTL  321 (340)
T ss_dssp             TT-TEEEEEEEC-SSCEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEE
T ss_pred             cc-CceeeeecC-CceEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEE
Confidence            98 777777775 56899999999886 55677899999999998866543                3445677888766


Q ss_pred             ce
Q 021291          303 GT  304 (314)
Q Consensus       303 ~~  304 (314)
                      ++
T Consensus       322 ~s  323 (340)
T 4aow_A          322 FA  323 (340)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3.4e-36  Score=248.68  Aligned_cols=268  Identities=14%  Similarity=0.148  Sum_probs=192.4

Q ss_pred             ecCCCCceeEEEEccCCCEEEEecC------CCeEEEEeCCCCeEE----EEEeccCCcccEEEEEEcccCCCCeEEEee
Q 021291           14 LRGHRASVTDVCFHQTKPILFAGTT------GGELRIWDTVQHRTV----SSSWVHSAAHGIVSVATGPSIGLNKVISQG   83 (314)
Q Consensus        14 l~~h~~~v~~~~~~~~~~~l~s~~~------dg~v~iwd~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (314)
                      ..+|...|++++|+|||++||+|+.      |+.|++|+..++...    .....|.  ..|.+++|+|  ++ .+++++
T Consensus        38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~--~~V~~~~~s~--d~-~~l~~s  112 (357)
T 4g56_B           38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTE--AGVTDVAWVS--EK-GILVAS  112 (357)
T ss_dssp             --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECS--SCEEEEEEET--TT-EEEEEE
T ss_pred             cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCC--CCEEEEEEcC--CC-CEEEEE
Confidence            3579999999999999999999997      788999998776532    2334566  4599999999  74 567788


Q ss_pred             cCCeEEEEeCCCCCCCCCCeeeee--cceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceec
Q 021291           84 RDGTVKCWDIENGGLSSNPSLTIK--TNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVP  157 (314)
Q Consensus        84 ~dg~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  157 (314)
                      .||+|+|||+.+++......+...  ........+++.... .......+...+|++....... .+.+|..    ++|+
T Consensus       113 ~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~-l~sgs~dg~v~iwd~~~~~~~~-~~~~h~~~v~~v~~s  190 (357)
T 4g56_B          113 DSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQ-AVSGGKDFSVKVWDLSQKAVLK-SYNAHSSEVNCVAAC  190 (357)
T ss_dssp             TTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSE-EEEEETTSCEEEEETTTTEEEE-EECCCSSCEEEEEEC
T ss_pred             CCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCE-EEEEeCCCeEEEEECCCCcEEE-EEcCCCCCEEEEEEc
Confidence            899999999998875442222222  233444444443322 2334455667888887765443 4556665    8899


Q ss_pred             cCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEE
Q 021291          158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD  237 (314)
Q Consensus       158 ~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd  237 (314)
                      ++++.+++ +++.|+.|++||+++++....+...      .    ....+.++. |+|++  +. +|++|+.|+.|++||
T Consensus       191 ~~~~~~~~-s~~~dg~v~~wd~~~~~~~~~~~~~------~----~~~~v~~v~-~sp~~--~~-~la~g~~d~~i~~wd  255 (357)
T 4g56_B          191 PGKDTIFL-SCGEDGRILLWDTRKPKPATRIDFC------A----SDTIPTSVT-WHPEK--DD-TFACGDETGNVSLVN  255 (357)
T ss_dssp             TTCSSCEE-EEETTSCEEECCTTSSSCBCBCCCT------T----CCSCEEEEE-ECTTS--TT-EEEEEESSSCEEEEE
T ss_pred             cCCCceee-eeccCCceEEEECCCCceeeeeeec------c----ccccccchh-hhhcc--cc-eEEEeecccceeEEE
Confidence            99887766 5666999999999998877655421      1    245678887 99973  33 899999999999999


Q ss_pred             ccCCCCceEeeecCCcceEEEEEeCCC-CeEEEecCCCcEEEEecCCCeeeEe------eeeeeecC-CCceece
Q 021291          238 IRNPGIPLTAMKVHLEPVLCLSIDESC-NGGISGGADQKIVLYNLDHSTYVLF------GIGFVCDQ-EGNKFGT  304 (314)
Q Consensus       238 ~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~i~iw~~~~~~~~~~------~~~~~~~~-~~~~~~~  304 (314)
                      +++ ++++..+.+|...|++++|+|++ ++|++|+.|+.|+|||+++++.+..      +..++++| ++..|++
T Consensus       256 ~~~-~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s  329 (357)
T 4g56_B          256 IKN-PDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTT  329 (357)
T ss_dssp             SSC-GGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEE
T ss_pred             CCC-CcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEE
Confidence            998 88899999999999999999987 5789999999999999999887654      34556776 5666654

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=4.8e-36  Score=244.20  Aligned_cols=244  Identities=15%  Similarity=0.230  Sum_probs=189.1

Q ss_pred             CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v   88 (314)
                      .+++.+++|...|.+++|+|++++|++|+.|++|+|||+.+++.+..+.+|...  |.+++|+|  ++.+|++++.|++|
T Consensus        56 ~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~--v~~~~~~~--~~~~l~s~s~D~~i  131 (319)
T 3frx_A           56 VPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSD--VMSVDIDK--KASMIISGSRDKTI  131 (319)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC--EEEEEECT--TSCEEEEEETTSCE
T ss_pred             ccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCc--EEEEEEcC--CCCEEEEEeCCCeE
Confidence            467889999999999999999999999999999999999999999999999855  99999999  99999999999999


Q ss_pred             EEEeCCCCCCCCCCeeeeec--ceeeEEEeeeeec-----cccccccCCCCcceeeccCCceeeecCCCCCC----ceec
Q 021291           89 KCWDIENGGLSSNPSLTIKT--NSYHFCKLSLVKE-----PYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVP  157 (314)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  157 (314)
                      ++||++...     ...+..  .......+.+...     .........+...+|++...... ..+.+|..    ++|+
T Consensus       132 ~vwd~~~~~-----~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~h~~~v~~~~~s  205 (319)
T 3frx_A          132 KVWTIKGQC-----LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE-ADFIGHNSNINTLTAS  205 (319)
T ss_dssp             EEEETTSCE-----EEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEE-EEECCCCSCEEEEEEC
T ss_pred             EEEECCCCe-----EEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhh-eeecCCCCcEEEEEEc
Confidence            999997532     222222  2223333332211     12334445567788888765433 34556666    8999


Q ss_pred             cCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEE
Q 021291          158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD  237 (314)
Q Consensus       158 ~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd  237 (314)
                      |+++.++  +|+.|+.|++||+++++.+..+.        .     ...+.+++ |+|+   +. +++++.. +.+++|+
T Consensus       206 p~g~~l~--s~~~dg~i~iwd~~~~~~~~~~~--------~-----~~~v~~~~-~sp~---~~-~la~~~~-~~i~v~~  264 (319)
T 3frx_A          206 PDGTLIA--SAGKDGEIMLWNLAAKKAMYTLS--------A-----QDEVFSLA-FSPN---RY-WLAAATA-TGIKVFS  264 (319)
T ss_dssp             TTSSEEE--EEETTCEEEEEETTTTEEEEEEE--------C-----CSCEEEEE-ECSS---SS-EEEEEET-TEEEEEE
T ss_pred             CCCCEEE--EEeCCCeEEEEECCCCcEEEEec--------C-----CCcEEEEE-EcCC---CC-EEEEEcC-CCcEEEE
Confidence            9997543  67779999999999999888877        2     23578887 9998   54 7777764 5699999


Q ss_pred             ccCCCCceEeee--------cCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCC
Q 021291          238 IRNPGIPLTAMK--------VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS  284 (314)
Q Consensus       238 ~~~~~~~~~~~~--------~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~  284 (314)
                      ++. ...+..+.        .|...+.+++|+|+|++|++|+.||.|++||+.++
T Consensus       265 ~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          265 LDP-QYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             ETT-EEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             eCc-CeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence            986 54444443        35668999999999999999999999999998764

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.5e-35  Score=239.30  Aligned_cols=252  Identities=16%  Similarity=0.297  Sum_probs=199.4

Q ss_pred             CCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC
Q 021291            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (314)
Q Consensus         7 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg   86 (314)
                      .++....+.+|...|.+++|+|++++|++|+.||.|++||+++++++..+.+|...  |.+++|+|  ++++|++++.|+
T Consensus        54 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~--v~~~~~~~--~~~~l~s~~~d~  129 (312)
T 4ery_A           54 DGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNP--QSNLIVSGSFDE  129 (312)
T ss_dssp             TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC--EEEEEECS--SSSEEEEEETTS
T ss_pred             CcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCC--EEEEEEcC--CCCEEEEEeCCC
Confidence            35678889999999999999999999999999999999999999999999999854  99999999  999999999999


Q ss_pred             eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCc
Q 021291           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPK  162 (314)
Q Consensus        87 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  162 (314)
                      +|++||+++++...  .+..+........+++... ........+...+|++............+..    ++|+|+++.
T Consensus       130 ~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (312)
T 4ery_A          130 SVRIWDVKTGKCLK--TLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY  206 (312)
T ss_dssp             CEEEEETTTCCEEE--EECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSE
T ss_pred             cEEEEECCCCEEEE--EecCCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCE
Confidence            99999999886533  2222333334444443322 2233444567788888877766555444443    889999976


Q ss_pred             eEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCC
Q 021291          163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG  242 (314)
Q Consensus       163 ~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~  242 (314)
                      ++  +++.|+.|++||+++++.+..+.        +|.....  ..... +++.  ++. +|++|+.||.|++||+++ +
T Consensus       207 l~--~~~~d~~i~iwd~~~~~~~~~~~--------~~~~~~~--~~~~~-~~~~--~~~-~l~sg~~dg~i~vwd~~~-~  269 (312)
T 4ery_A          207 IL--AATLDNTLKLWDYSKGKCLKTYT--------GHKNEKY--CIFAN-FSVT--GGK-WIVSGSEDNLVYIWNLQT-K  269 (312)
T ss_dssp             EE--EEETTTEEEEEETTTTEEEEEEC--------SSCCSSS--CCCEE-EECS--SSC-EEEECCTTSCEEEEETTT-C
T ss_pred             EE--EEcCCCeEEEEECCCCcEEEEEE--------ecCCceE--EEEEE-EEeC--CCc-EEEEECCCCEEEEEECCC-c
Confidence            54  56678999999999999888887        5644322  22222 5543  144 899999999999999998 8


Q ss_pred             CceEeeecCCcceEEEEEeCCCCeEEEec--CCCcEEEEecC
Q 021291          243 IPLTAMKVHLEPVLCLSIDESCNGGISGG--ADQKIVLYNLD  282 (314)
Q Consensus       243 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s--~dg~i~iw~~~  282 (314)
                      +.+..+.+|...|.+++|+|++.+|++++  .|+.|++|+.+
T Consensus       270 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          270 EIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             CEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             hhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            88999999999999999999999999986  69999999975

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.7e-35  Score=241.96  Aligned_cols=247  Identities=16%  Similarity=0.200  Sum_probs=195.5

Q ss_pred             CCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCC----eEEEEEeccCCcccEEEEEEcccCCCCeEEEe
Q 021291            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH----RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ   82 (314)
Q Consensus         7 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~   82 (314)
                      .++.+..+..|...|.+++|+|++++|++|+.|+.|++|++.++    +....+.+|...  |.++.|++  + ..++++
T Consensus        86 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~--~-~~l~s~  160 (340)
T 1got_B           86 TTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGY--LSCCRFLD--D-NQIVTS  160 (340)
T ss_dssp             TCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSC--EEEEEEEE--T-TEEEEE
T ss_pred             CCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCcc--EEEEEECC--C-CcEEEE
Confidence            34677888999999999999999999999999999999999865    456677888854  99999998  6 569999


Q ss_pred             ecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceecc
Q 021291           83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPA  158 (314)
Q Consensus        83 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  158 (314)
                      +.|++|++||+++++...  .+..+........+++... ........+...+|+++...... .+.+|..    ++|+|
T Consensus       161 s~d~~i~~wd~~~~~~~~--~~~~h~~~v~~~~~~~~~~-~l~sg~~d~~v~~wd~~~~~~~~-~~~~h~~~v~~v~~~p  236 (340)
T 1got_B          161 SGDTTCALWDIETGQQTT--TFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQ-TFTGHESDINAICFFP  236 (340)
T ss_dssp             ETTSCEEEEETTTTEEEE--EECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCSEEE-EECCCSSCEEEEEECT
T ss_pred             ECCCcEEEEECCCCcEEE--EEcCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCeeEE-EEcCCcCCEEEEEEcC
Confidence            999999999999886533  2222333344444443322 23344456778888887765443 4455655    89999


Q ss_pred             CCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEc
Q 021291          159 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI  238 (314)
Q Consensus       159 ~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~  238 (314)
                      +++.++  +|+.|++|++||+++++.+..+..         .. ....+.++. |+|+   |+ +|++|+.|+.|++||+
T Consensus       237 ~~~~l~--s~s~d~~v~iwd~~~~~~~~~~~~---------~~-~~~~v~~~~-~s~~---g~-~l~~g~~d~~i~vwd~  299 (340)
T 1got_B          237 NGNAFA--TGSDDATCRLFDLRADQELMTYSH---------DN-IICGITSVS-FSKS---GR-LLLAGYDDFNCNVWDA  299 (340)
T ss_dssp             TSSEEE--EEETTSCEEEEETTTTEEEEEECC---------TT-CCSCEEEEE-ECTT---SS-EEEEEETTSEEEEEET
T ss_pred             CCCEEE--EEcCCCcEEEEECCCCcEEEEEcc---------CC-cccceEEEE-ECCC---CC-EEEEECCCCeEEEEEc
Confidence            987544  677799999999999887776652         11 233578887 9998   55 9999999999999999


Q ss_pred             cCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEe
Q 021291          239 RNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN  280 (314)
Q Consensus       239 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~  280 (314)
                      .+ +..+..+.+|..+|++++|+|++.+|+||+.||.|++||
T Consensus       300 ~~-~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          300 LK-ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             TT-CCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             cc-CcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            98 788899999999999999999999999999999999997

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=4.9e-37  Score=256.06  Aligned_cols=262  Identities=13%  Similarity=0.203  Sum_probs=198.8

Q ss_pred             CCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCe-------EEEEEeccCCcccEEEEEEcccCCCCeE
Q 021291            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-------TVSSSWVHSAAHGIVSVATGPSIGLNKV   79 (314)
Q Consensus         7 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~l   79 (314)
                      .++.+..+++|...|.+++|+|++++|++|+.|+.|++||+.+..       ....+.+|...  |.++.|.|. ++..|
T Consensus        97 ~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~--v~~~~~~~~-~~~~l  173 (380)
T 3iz6_a           97 TSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGY--ASSCQYVPD-QETRL  173 (380)
T ss_dssp             TTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSC--CCCCBCCSS-SSSCE
T ss_pred             CCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcc--eEEEEEecC-CCCEE
Confidence            346778899999999999999999999999999999999986532       33456778744  999999993 24579


Q ss_pred             EEeecCCeEEEEeCCCCCCCCCCee-----eeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC-
Q 021291           80 ISQGRDGTVKCWDIENGGLSSNPSL-----TIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-  153 (314)
Q Consensus        80 ~s~~~dg~v~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  153 (314)
                      ++|+.|++|++||+++++...  .+     ..+........+..............+...+|+++........+.+|.. 
T Consensus       174 ~s~s~D~~i~~wd~~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~  251 (380)
T 3iz6_a          174 ITGSGDQTCVLWDVTTGQRIS--IFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGD  251 (380)
T ss_dssp             EEECTTSCEEEECTTTCCEEE--EECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSC
T ss_pred             EEECCCCcEEEEEcCCCcEEE--EeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCC
Confidence            999999999999999886532  11     1112222223332222233444555677888998765555556667766 


Q ss_pred             ---ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecC
Q 021291          154 ---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED  230 (314)
Q Consensus       154 ---~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~d  230 (314)
                         ++|+|+++.++  +|+.|++|++||+++++.+..+....     .........+.+++ |+|+   |+ +|++|+.|
T Consensus       252 v~~v~~~p~~~~l~--s~s~D~~i~lwd~~~~~~~~~~~~~~-----~~~~~~~~~v~~~~-~s~~---g~-~l~~g~~d  319 (380)
T 3iz6_a          252 INSVKFFPDGQRFG--TGSDDGTCRLFDMRTGHQLQVYNREP-----DRNDNELPIVTSVA-FSIS---GR-LLFAGYSN  319 (380)
T ss_dssp             CCEEEECTTSSEEE--EECSSSCEEEEETTTTEEEEEECCCC-----SSSCCSSCSCSEEE-ECSS---SS-EEEEECTT
T ss_pred             eEEEEEecCCCeEE--EEcCCCeEEEEECCCCcEEEEecccc-----cccccccCceEEEE-ECCC---CC-EEEEEECC
Confidence               89999997543  68889999999999999888776210     11111223477887 9998   55 99999999


Q ss_pred             CcEEEEEccCCCCceEee----ecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCee
Q 021291          231 GSILVWDIRNPGIPLTAM----KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTY  286 (314)
Q Consensus       231 g~i~vwd~~~~~~~~~~~----~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~  286 (314)
                      |.|++||+.. ++.+..+    .+|...|++++|+|++.+|+|||.||.|++|++...+.
T Consensus       320 g~i~vwd~~~-~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~~  378 (380)
T 3iz6_a          320 GDCYVWDTLL-AEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHRK  378 (380)
T ss_dssp             SCEEEEETTT-CCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSSS
T ss_pred             CCEEEEECCC-CceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCcc
Confidence            9999999987 6666666    68999999999999999999999999999999987654

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=7.2e-36  Score=245.09  Aligned_cols=261  Identities=8%  Similarity=0.073  Sum_probs=191.2

Q ss_pred             CCCCceeEEEEccCCCEEEEecCCCeEEEEeCCC------------CeEEEEEeccCCcccEEEEEEcccCCCCeEEEee
Q 021291           16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ------------HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG   83 (314)
Q Consensus        16 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (314)
                      .|...|.+++|+|||++|++++ |+++++||...            +..... ..+.  ..|.+++|+|  + +.|++|+
T Consensus        28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~-~~~~--~~v~~~~~s~--d-~~l~~~s  100 (344)
T 4gqb_B           28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAG-VQTE--AGVADLTWVG--E-RGILVAS  100 (344)
T ss_dssp             SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEE-EEES--SCEEEEEEET--T-TEEEEEE
T ss_pred             cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeee-eccC--CCEEEEEEeC--C-CeEEEEE
Confidence            5778899999999999999887 67788887321            011111 1233  4599999999  7 6789999


Q ss_pred             cCCeEEEEeCCCCCCCCCCeeee--ecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceec
Q 021291           84 RDGTVKCWDIENGGLSSNPSLTI--KTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVP  157 (314)
Q Consensus        84 ~dg~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  157 (314)
                      .||+|+|||+++++.........  +........+++.+. ........+...+|++..+... ..+.+|..    ++|+
T Consensus       101 ~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~-~l~sgs~d~~i~iwd~~~~~~~-~~~~~h~~~V~~~~~~  178 (344)
T 4gqb_B          101 DSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT-QAVSGSKDICIKVWDLAQQVVL-SSYRAHAAQVTCVAAS  178 (344)
T ss_dssp             TTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEE-EEECCCSSCEEEEEEC
T ss_pred             CCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCCCcEE-EEEcCcCCceEEEEec
Confidence            99999999999987654212222  223344444444332 2233445567888888876544 45667776    8899


Q ss_pred             cCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEE
Q 021291          158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD  237 (314)
Q Consensus       158 ~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd  237 (314)
                      +++..+++ +++.|++|++||+++++....+...      .|    ...+.++. |+|++  ++ +|++|+.||.|++||
T Consensus       179 ~~~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~~------~~----~~~~~~~~-~~p~~--~~-~l~sg~~dg~v~~wd  243 (344)
T 4gqb_B          179 PHKDSVFL-SCSEDNRILLWDTRCPKPASQIGCS------AP----GYLPTSLA-WHPQQ--SE-VFVFGDENGTVSLVD  243 (344)
T ss_dssp             SSCTTEEE-EEETTSCEEEEETTSSSCEEECC--------------CCCEEEEE-ECSSC--TT-EEEEEETTSEEEEEE
T ss_pred             CCCCCcee-eeccccccccccccccceeeeeecc------ee----eccceeee-ecCCC--Cc-ceEEeccCCcEEEEE
Confidence            99987766 6777999999999999988776521      11    33567787 99973  33 899999999999999


Q ss_pred             ccCCCCceEeeecCCcceEEEEEeCCC-CeEEEecCCCcEEEEecCCCeeeEe------eeeeeecCCCce
Q 021291          238 IRNPGIPLTAMKVHLEPVLCLSIDESC-NGGISGGADQKIVLYNLDHSTYVLF------GIGFVCDQEGNK  301 (314)
Q Consensus       238 ~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~i~iw~~~~~~~~~~------~~~~~~~~~~~~  301 (314)
                      +++ ++++..+.+|...|++++|+|++ ++|++|+.|+.|+|||+++++....      +..++++|++..
T Consensus       244 ~~~-~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~  313 (344)
T 4gqb_B          244 TKS-TSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHS  313 (344)
T ss_dssp             SCC---CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTT
T ss_pred             CCC-CcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCe
Confidence            998 88999999999999999999998 5799999999999999999876543      344567777753

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.4e-35  Score=261.87  Aligned_cols=248  Identities=15%  Similarity=0.136  Sum_probs=192.2

Q ss_pred             CCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCC
Q 021291           16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN   95 (314)
Q Consensus        16 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~   95 (314)
                      .+.+.+.+++|+|||++|++++ ++.|++|++.+++....+.+|...  |.+++|+|  ++++|++|+.|++|+|||+.+
T Consensus        16 ~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~--v~~~~~sp--dg~~lasg~~d~~v~lWd~~~   90 (611)
T 1nr0_A           16 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQ--TTVAKTSP--SGYYCASGDVHGNVRIWDTTQ   90 (611)
T ss_dssp             CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSC--EEEEEECT--TSSEEEEEETTSEEEEEESSS
T ss_pred             cccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCeEecCCCCc--eEEEEECC--CCcEEEEEeCCCCEEEeECCC
Confidence            3577889999999999999987 569999999988899999999955  99999999  999999999999999999976


Q ss_pred             CCCCCCCeeeeecceeeEEEeeeeeccccccccCCC-CcceeeccCCceeeecCCCCCC----ceeccCCCceEEEeecC
Q 021291           96 GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANE-PKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQ  170 (314)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~  170 (314)
                      ++......+..+........|++.+........... ...++..+.+ .....+.+|..    ++|+|+++..++ +|+.
T Consensus        91 ~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~-~~~~~l~gh~~~v~~v~f~p~~~~~l~-s~s~  168 (611)
T 1nr0_A           91 TTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG-TSNGNLTGQARAMNSVDFKPSRPFRII-SGSD  168 (611)
T ss_dssp             TTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC-CBCBCCCCCSSCEEEEEECSSSSCEEE-EEET
T ss_pred             CcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCC-CCcceecCCCCCceEEEECCCCCeEEE-EEeC
Confidence            543221122223344455555554433322222111 1223333322 23345677776    899999876555 6777


Q ss_pred             cCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeee-
Q 021291          171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK-  249 (314)
Q Consensus       171 d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~-  249 (314)
                      |++|++||.++++....+.        +|    ...+.+++ |+|+   |+ +|++|+.|++|++||+.+ ++++..+. 
T Consensus       169 D~~v~lwd~~~~~~~~~l~--------~H----~~~V~~v~-fspd---g~-~las~s~D~~i~lwd~~~-g~~~~~~~~  230 (611)
T 1nr0_A          169 DNTVAIFEGPPFKFKSTFG--------EH----TKFVHSVR-YNPD---GS-LFASTGGDGTIVLYNGVD-GTKTGVFED  230 (611)
T ss_dssp             TSCEEEEETTTBEEEEEEC--------CC----SSCEEEEE-ECTT---SS-EEEEEETTSCEEEEETTT-CCEEEECBC
T ss_pred             CCeEEEEECCCCeEeeeec--------cc----cCceEEEE-ECCC---CC-EEEEEECCCcEEEEECCC-CcEeeeecc
Confidence            9999999999988888887        67    44788888 9998   55 899999999999999987 77777774 


Q ss_pred             ------cCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeE
Q 021291          250 ------VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVL  288 (314)
Q Consensus       250 ------~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~  288 (314)
                            +|...|.+++|+|++++|++++.|+.|++||+++++.+.
T Consensus       231 ~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~  275 (611)
T 1nr0_A          231 DSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEK  275 (611)
T ss_dssp             TTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             ccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceee
Confidence                  799999999999999999999999999999999887553

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.5e-35  Score=248.11  Aligned_cols=237  Identities=22%  Similarity=0.364  Sum_probs=184.0

Q ss_pred             ceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCC
Q 021291           20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLS   99 (314)
Q Consensus        20 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~   99 (314)
                      .|++++|+|+|++|++|+.||.|+|||+.+++.+..+.+|...  |.+++|+|  ++++|++++.|++|++||++++++.
T Consensus       125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~--v~~~~~~p--~~~~l~s~s~d~~v~iwd~~~~~~~  200 (393)
T 1erj_A          125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQD--IYSLDYFP--SGDKLVSGSGDRTVRIWDLRTGQCS  200 (393)
T ss_dssp             BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC--EEEEEECT--TSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCC--EEEEEEcC--CCCEEEEecCCCcEEEEECCCCeeE
Confidence            4999999999999999999999999999999999999999855  99999999  9999999999999999999988653


Q ss_pred             CCCeeeeec-ceeeEEEeeeeeccccccccCCCCcceeeccCCceeeec------CCCCCC----ceeccCCCceEEEee
Q 021291          100 SNPSLTIKT-NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTD------SLCDSK----DDVPAEGPKYMAVAG  168 (314)
Q Consensus       100 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~----~~~~~~~~~~~~~~g  168 (314)
                      .    .+.. .......+++............+...+|++.........      ..+|..    ++|+|+++.++  +|
T Consensus       201 ~----~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~--s~  274 (393)
T 1erj_A          201 L----TLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV--SG  274 (393)
T ss_dssp             E----EEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEE--EE
T ss_pred             E----EEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEE--EE
Confidence            2    2222 223333333322223334455667788888776544322      245655    89999997544  67


Q ss_pred             cCcCeEEEEecCCCce------------eeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEE
Q 021291          169 EQLSEVEIWDLNTAER------------CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW  236 (314)
Q Consensus       169 ~~d~~i~vwd~~~~~~------------~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vw  236 (314)
                      +.|+.|++||+++...            ...+.        +|    ...+.++. |+|+   +. +|++|+.|+.|++|
T Consensus       275 s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~--------~h----~~~v~~~~-~~~~---~~-~l~sgs~D~~v~iw  337 (393)
T 1erj_A          275 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI--------GH----KDFVLSVA-TTQN---DE-YILSGSKDRGVLFW  337 (393)
T ss_dssp             ETTSEEEEEEC---------------CEEEEEE--------CC----SSCEEEEE-ECGG---GC-EEEEEETTSEEEEE
T ss_pred             eCCCEEEEEECCCCCCcccccCCCCCcceEEEe--------cc----cCcEEEEE-ECCC---CC-EEEEEeCCCeEEEE
Confidence            7899999999986432            33333        55    44688887 9998   44 89999999999999


Q ss_pred             EccCCCCceEeeecCCcceEEEEEeC------CCCeEEEecCCCcEEEEecCCC
Q 021291          237 DIRNPGIPLTAMKVHLEPVLCLSIDE------SCNGGISGGADQKIVLYNLDHS  284 (314)
Q Consensus       237 d~~~~~~~~~~~~~h~~~v~~~~~~~------~~~~l~s~s~dg~i~iw~~~~~  284 (314)
                      |.++ ++++..+.+|...|.+++|++      ++.+|+||+.||.|++|+++..
T Consensus       338 d~~~-~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          338 DKKS-GNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             ETTT-CCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             ECCC-CeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence            9998 888999999999999999965      6889999999999999998643

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=5.6e-36  Score=246.33  Aligned_cols=249  Identities=16%  Similarity=0.200  Sum_probs=181.9

Q ss_pred             CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v   88 (314)
                      .+...+.+|...|.+++|+|++.+|++|+.|++|++||+++++.+..+.+|...  |.+++|+|  ++++|++++.|++|
T Consensus        67 ~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~--v~~v~~sp--~~~~l~s~~~d~~i  142 (343)
T 2xzm_R           67 IPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSE--VYSVAFSP--DNRQILSAGAEREI  142 (343)
T ss_dssp             EEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSC--EEEEEECS--STTEEEEEETTSCE
T ss_pred             cccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCc--EEEEEECC--CCCEEEEEcCCCEE
Confidence            457789999999999999999999999999999999999999999999999855  99999999  99999999999999


Q ss_pred             EEEeCCCCCCCCCCeeeeecceeeEEEeeeeec---------cccccccCCCCcceeeccCCceeeecCCCCCC----ce
Q 021291           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKE---------PYANAKQANEPKDCYEREVGETVDTDSLCDSK----DD  155 (314)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  155 (314)
                      ++||+.............+........+++...         .........+...+|+..  ......+.+|..    ++
T Consensus       143 ~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~h~~~v~~~~  220 (343)
T 2xzm_R          143 KLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN--FQIRYTFKAHESNVNHLS  220 (343)
T ss_dssp             EEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT--TEEEEEEECCSSCEEEEE
T ss_pred             EEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC--CceeEEEcCccccceEEE
Confidence            999997432110000001222333344443321         122233344556667632  233344556665    89


Q ss_pred             eccCCCceEEEeecCcCeEEEEecCCC-ceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEE
Q 021291          156 VPAEGPKYMAVAGEQLSEVEIWDLNTA-ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL  234 (314)
Q Consensus       156 ~~~~~~~~~~~~g~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~  234 (314)
                      |+|+++.++  +|+.|+.|++||++.. .....+.         +    ...+.+++ |+|+   +. +++ ++.|+.|+
T Consensus       221 ~s~~g~~l~--sgs~dg~v~iwd~~~~~~~~~~~~---------~----~~~v~~v~-~sp~---~~-~la-~~~d~~v~  279 (343)
T 2xzm_R          221 ISPNGKYIA--TGGKDKKLLIWDILNLTYPQREFD---------A----GSTINQIA-FNPK---LQ-WVA-VGTDQGVK  279 (343)
T ss_dssp             ECTTSSEEE--EEETTCEEEEEESSCCSSCSEEEE---------C----SSCEEEEE-ECSS---SC-EEE-EEESSCEE
T ss_pred             ECCCCCEEE--EEcCCCeEEEEECCCCcccceeec---------C----CCcEEEEE-ECCC---CC-EEE-EECCCCEE
Confidence            999997544  6777999999999543 3333333         1    23578887 9998   44 555 45688899


Q ss_pred             EEEccCCCCceE--eee-----------cCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCe
Q 021291          235 VWDIRNPGIPLT--AMK-----------VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST  285 (314)
Q Consensus       235 vwd~~~~~~~~~--~~~-----------~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~  285 (314)
                      +||+.+ .+...  .+.           +|...|++++|+|++++|++|+.||.|++|+++++.
T Consensus       280 iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~  342 (343)
T 2xzm_R          280 IFNLMT-QSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA  342 (343)
T ss_dssp             EEESSS-CCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred             EEEeCC-CCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence            999986 43322  333           688899999999999999999999999999987653

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=5e-35  Score=258.27  Aligned_cols=260  Identities=13%  Similarity=0.141  Sum_probs=199.7

Q ss_pred             CCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCC--eEEEEEeccCCcccEEEEEEcccCCCCeEEEeec
Q 021291            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH--RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (314)
Q Consensus         7 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (314)
                      .++.+..|.+|...|++++|+|+|++||+|+.||+|+|||+.++  .....+.+|..  .|.+++|+|  +++.|++++.
T Consensus        48 ~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~--~v~~v~fs~--dg~~l~~~~~  123 (611)
T 1nr0_A           48 SLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSG--PVKDISWDS--ESKRIAAVGE  123 (611)
T ss_dssp             CSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSS--CEEEEEECT--TSCEEEEEEC
T ss_pred             CcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCC--ceEEEEECC--CCCEEEEEEC
Confidence            34678899999999999999999999999999999999998754  34567788884  499999999  9999999886


Q ss_pred             C----CeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----cee
Q 021291           85 D----GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDV  156 (314)
Q Consensus        85 d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  156 (314)
                      +    +.|++||..  +...  .+..+........|++................+|+....+. ...+.+|..    ++|
T Consensus       124 ~~~~~~~v~~wd~~--~~~~--~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~-~~~l~~H~~~V~~v~f  198 (611)
T 1nr0_A          124 GRERFGHVFLFDTG--TSNG--NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF-KSTFGEHTKFVHSVRY  198 (611)
T ss_dssp             CSSCSEEEEETTTC--CBCB--CCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEE-EEEECCCSSCEEEEEE
T ss_pred             CCCceeEEEEeeCC--CCcc--eecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeE-eeeeccccCceEEEEE
Confidence            5    478888853  3222  23444455556666655443345556667788888766543 345677876    899


Q ss_pred             ccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEE
Q 021291          157 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW  236 (314)
Q Consensus       157 ~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vw  236 (314)
                      +|+++.++  +++.|++|++||+.+++.+..+... .....+|    ...+.++. |+|+   |+ +|++++.|++|++|
T Consensus       199 spdg~~la--s~s~D~~i~lwd~~~g~~~~~~~~~-~~~~~~h----~~~V~~v~-~spd---g~-~l~s~s~D~~v~lW  266 (611)
T 1nr0_A          199 NPDGSLFA--STGGDGTIVLYNGVDGTKTGVFEDD-SLKNVAH----SGSVFGLT-WSPD---GT-KIASASADKTIKIW  266 (611)
T ss_dssp             CTTSSEEE--EEETTSCEEEEETTTCCEEEECBCT-TSSSCSS----SSCEEEEE-ECTT---SS-EEEEEETTSEEEEE
T ss_pred             CCCCCEEE--EEECCCcEEEEECCCCcEeeeeccc-ccccccc----CCCEEEEE-ECCC---CC-EEEEEeCCCeEEEE
Confidence            99997443  6777999999999999887776310 0011134    55788998 9998   55 89999999999999


Q ss_pred             EccCCCCce-------------------------------------------EeeecCCcceEEEEEeCCCCeEEEecCC
Q 021291          237 DIRNPGIPL-------------------------------------------TAMKVHLEPVLCLSIDESCNGGISGGAD  273 (314)
Q Consensus       237 d~~~~~~~~-------------------------------------------~~~~~h~~~v~~~~~~~~~~~l~s~s~d  273 (314)
                      |+++ ++++                                           ..+.+|...|++++|+|++++|++++.|
T Consensus       267 d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D  345 (611)
T 1nr0_A          267 NVAT-LKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAE  345 (611)
T ss_dssp             ETTT-TEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             eCCC-CceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCC
Confidence            9986 4332                                           3445899999999999999999999999


Q ss_pred             CcEEEEecCCCeeeE
Q 021291          274 QKIVLYNLDHSTYVL  288 (314)
Q Consensus       274 g~i~iw~~~~~~~~~  288 (314)
                      +.|++||+.+++...
T Consensus       346 ~~v~~Wd~~~~~~~~  360 (611)
T 1nr0_A          346 GHINSWDISTGISNR  360 (611)
T ss_dssp             SCEEEEETTTCCEEE
T ss_pred             CcEEEEECCCCceee
Confidence            999999999887644

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=4.8e-35  Score=241.62  Aligned_cols=249  Identities=16%  Similarity=0.193  Sum_probs=195.7

Q ss_pred             CCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCC------eEEEEEeccCCcccEEEEEEcccCCCCeEE
Q 021291            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH------RTVSSSWVHSAAHGIVSVATGPSIGLNKVI   80 (314)
Q Consensus         7 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~   80 (314)
                      +.+..+.+..|...|.+++|+|++.+|++|+.|+.+++|++...      .....+..|...  |.+++|+|  ++..|+
T Consensus        95 ~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~--~~~~l~  170 (354)
T 2pbi_B           95 TTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNY--LSACSFTN--SDMQIL  170 (354)
T ss_dssp             TCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSC--EEEEEECS--SSSEEE
T ss_pred             CCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCc--EEEEEEeC--CCCEEE
Confidence            45677788899999999999999999999999999999998643      345566778844  99999999  889999


Q ss_pred             EeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeec-cccccccCCCCcceeeccCCceeeecCCCCCC----ce
Q 021291           81 SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKE-PYANAKQANEPKDCYEREVGETVDTDSLCDSK----DD  155 (314)
Q Consensus        81 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  155 (314)
                      +++.|++|++||+++++...  .+..+........+.+... .........+...+|+++...... .+.+|..    ++
T Consensus       171 t~s~D~~v~lwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~-~~~~h~~~v~~v~  247 (354)
T 2pbi_B          171 TASGDGTCALWDVESGQLLQ--SFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQ-AFETHESDVNSVR  247 (354)
T ss_dssp             EEETTSEEEEEETTTCCEEE--EEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEE-EECCCSSCEEEEE
T ss_pred             EEeCCCcEEEEeCCCCeEEE--EEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEE-EecCCCCCeEEEE
Confidence            99999999999999987543  2222333333333433322 234445556778889988776543 3456655    89


Q ss_pred             eccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEE
Q 021291          156 VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV  235 (314)
Q Consensus       156 ~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~v  235 (314)
                      |+|+++.++  +|+.|++|++||++..+.+..+..        +.  ....+.++. |+|+   |. +|++|+.|+.|++
T Consensus       248 ~~p~~~~l~--s~s~D~~v~lwd~~~~~~~~~~~~--------~~--~~~~~~~~~-~s~~---g~-~l~~g~~d~~i~v  310 (354)
T 2pbi_B          248 YYPSGDAFA--SGSDDATCRLYDLRADREVAIYSK--------ES--IIFGASSVD-FSLS---GR-LLFAGYNDYTINV  310 (354)
T ss_dssp             ECTTSSEEE--EEETTSCEEEEETTTTEEEEEECC--------TT--CCSCEEEEE-ECTT---SS-EEEEEETTSCEEE
T ss_pred             EeCCCCEEE--EEeCCCeEEEEECCCCcEEEEEcC--------CC--cccceeEEE-EeCC---CC-EEEEEECCCcEEE
Confidence            999987443  677799999999998887766652        21  123466777 9998   55 9999999999999


Q ss_pred             EEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEe
Q 021291          236 WDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN  280 (314)
Q Consensus       236 wd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~  280 (314)
                      ||+.+ +..+..+.+|...|++++|+|++.+|++|+.||.|++|+
T Consensus       311 wd~~~-~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          311 WDVLK-GSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EETTT-CSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EECCC-CceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            99988 888889999999999999999999999999999999996

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.1e-35  Score=243.00  Aligned_cols=252  Identities=13%  Similarity=0.154  Sum_probs=190.7

Q ss_pred             CceEEecCCCC-ceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEE---EeccCCcccEEEEEEcccCCCCeEEEeec
Q 021291            9 DPVAVLRGHRA-SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS---SWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (314)
Q Consensus         9 ~~~~~l~~h~~-~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (314)
                      ++++++++|.+ .|.+++|+|+|++||+|+.|++|+|||+++++....   ..+|.  ..|.+++|+|  ++++|++++.
T Consensus         6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~--~~v~~~~~sp--~g~~l~s~s~   81 (345)
T 3fm0_A            6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQ--RTVRKVAWSP--CGNYLASASF   81 (345)
T ss_dssp             EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCS--SCEEEEEECT--TSSEEEEEET
T ss_pred             EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccC--CcEEEEEECC--CCCEEEEEEC
Confidence            57889999998 999999999999999999999999999988764422   24676  4599999999  9999999999


Q ss_pred             CCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCc--eeeecCCCCCC----ceecc
Q 021291           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE--TVDTDSLCDSK----DDVPA  158 (314)
Q Consensus        85 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~----~~~~~  158 (314)
                      |++|++||+.++.......+..+........+++... ........+...+|++....  .....+.+|..    ++|+|
T Consensus        82 D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p  160 (345)
T 3fm0_A           82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP  160 (345)
T ss_dssp             TSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS
T ss_pred             CCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCC-EEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC
Confidence            9999999998764321012222333444455554332 22334445677888887654  23445566766    89999


Q ss_pred             CCCceEEEeecCcCeEEEEecCCCce--eeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEE
Q 021291          159 EGPKYMAVAGEQLSEVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW  236 (314)
Q Consensus       159 ~~~~~~~~~g~~d~~i~vwd~~~~~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vw  236 (314)
                      +++.++  +++.|+.|++||.++++.  ...+.        +|    ...+.+++ |+|+   |+ +|++|+.|++|++|
T Consensus       161 ~~~~l~--s~s~d~~i~~w~~~~~~~~~~~~~~--------~h----~~~v~~l~-~sp~---g~-~l~s~s~D~~v~iW  221 (345)
T 3fm0_A          161 SQELLA--SASYDDTVKLYREEEDDWVCCATLE--------GH----ESTVWSLA-FDPS---GQ-RLASCSDDRTVRIW  221 (345)
T ss_dssp             SSSCEE--EEETTSCEEEEEEETTEEEEEEEEC--------CC----SSCEEEEE-ECTT---SS-EEEEEETTSCEEEE
T ss_pred             CCCEEE--EEeCCCcEEEEEecCCCEEEEEEec--------CC----CCceEEEE-ECCC---CC-EEEEEeCCCeEEEe
Confidence            987544  677799999999987753  34555        66    45788898 9998   55 89999999999999


Q ss_pred             EccCCCC--------------ceEeeec-CCcceEEEEEeCCCCeEEEecCCCcEEEEecCCC
Q 021291          237 DIRNPGI--------------PLTAMKV-HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS  284 (314)
Q Consensus       237 d~~~~~~--------------~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~  284 (314)
                      |...++.              ++..+.+ |...|.+++|++++..|++++.|+.|++|+.+.+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~  284 (345)
T 3fm0_A          222 RQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPN  284 (345)
T ss_dssp             EEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTT
T ss_pred             ccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCC
Confidence            9754221              2334444 8889999999999999999999999999998765

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.4e-34  Score=236.56  Aligned_cols=250  Identities=16%  Similarity=0.206  Sum_probs=186.8

Q ss_pred             CceEEecCCCCceeEEEE-----cc-CCCEEEEecCCCeEEEEeCCCC-------eEEEEEeccCCcccEEEEEEcccCC
Q 021291            9 DPVAVLRGHRASVTDVCF-----HQ-TKPILFAGTTGGELRIWDTVQH-------RTVSSSWVHSAAHGIVSVATGPSIG   75 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~-----~~-~~~~l~s~~~dg~v~iwd~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~   75 (314)
                      ++..+|+||.+.|++++|     ++ ++++|++|+.|++|++||+.+.       .....+.+|...  |.+++|+|  +
T Consensus        12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~--V~~~~~~~--~   87 (343)
T 2xzm_R           12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHF--VSDLALSQ--E   87 (343)
T ss_dssp             EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSC--EEEEEECS--S
T ss_pred             eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCc--eEEEEECC--C
Confidence            567789999999999999     77 8999999999999999998643       456778889855  99999999  9


Q ss_pred             CCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeee-cCCCCCC-
Q 021291           76 LNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDT-DSLCDSK-  153 (314)
Q Consensus        76 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-  153 (314)
                      +.+|++++.|++|++||+++++...  .+..+........+++.... .......+...+|++........ ....|.. 
T Consensus        88 ~~~l~s~s~D~~v~lwd~~~~~~~~--~~~~h~~~v~~v~~sp~~~~-l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~  164 (343)
T 2xzm_R           88 NCFAISSSWDKTLRLWDLRTGTTYK--RFVGHQSEVYSVAFSPDNRQ-ILSAGAEREIKLWNILGECKFSSAEKENHSDW  164 (343)
T ss_dssp             TTEEEEEETTSEEEEEETTSSCEEE--EEECCCSCEEEEEECSSTTE-EEEEETTSCEEEEESSSCEEEECCTTTSCSSC
T ss_pred             CCEEEEEcCCCcEEEEECCCCcEEE--EEcCCCCcEEEEEECCCCCE-EEEEcCCCEEEEEeccCCceeeeecccCCCce
Confidence            9999999999999999999886543  23334444455555544332 22334456778888764332221 2234544 


Q ss_pred             ---ceeccCCC---------ceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCc
Q 021291          154 ---DDVPAEGP---------KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGF  221 (314)
Q Consensus       154 ---~~~~~~~~---------~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~  221 (314)
                         ++|+|++.         .+++ +++.|+.|++||. ..+....+.        +|    ...+.++. |+|+   |+
T Consensus       165 v~~~~~~~~~~~~~~~~~~~~~l~-s~~~d~~i~iwd~-~~~~~~~~~--------~h----~~~v~~~~-~s~~---g~  226 (343)
T 2xzm_R          165 VSCVRYSPIMKSANKVQPFAPYFA-SVGWDGRLKVWNT-NFQIRYTFK--------AH----ESNVNHLS-ISPN---GK  226 (343)
T ss_dssp             EEEEEECCCCCSCSCCCSSCCEEE-EEETTSEEEEEET-TTEEEEEEE--------CC----SSCEEEEE-ECTT---SS
T ss_pred             eeeeeeccccccccccCCCCCEEE-EEcCCCEEEEEcC-CCceeEEEc--------Cc----cccceEEE-ECCC---CC
Confidence               78888763         2344 6777999999994 455666666        56    44788887 9998   55


Q ss_pred             eEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCee
Q 021291          222 VNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTY  286 (314)
Q Consensus       222 ~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~  286 (314)
                       +|++|+.||.|++||++....+...+. +...|.+++|+|++.+|++ +.|+.|++|++.+++.
T Consensus       227 -~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~-~~d~~v~iw~~~~~~~  288 (343)
T 2xzm_R          227 -YIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAV-GTDQGVKIFNLMTQSK  288 (343)
T ss_dssp             -EEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEE-EESSCEEEEESSSCCS
T ss_pred             -EEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEE-ECCCCEEEEEeCCCCC
Confidence             899999999999999965355555543 5667999999999987765 4688899999987654

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-34  Score=235.31  Aligned_cols=253  Identities=17%  Similarity=0.149  Sum_probs=184.1

Q ss_pred             CCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCC--eEEEEE-ec-cCCcccEEEEEEcccCCCCeEEEee
Q 021291            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH--RTVSSS-WV-HSAAHGIVSVATGPSIGLNKVISQG   83 (314)
Q Consensus         8 ~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~--~~~~~~-~~-~~~~~~v~~~~~~~~~~~~~l~s~~   83 (314)
                      .+++++|++|.++|.+++|+|+  +|++|+.|++|++||+.++  +.+..+ .. |.  ..|.+++|+|  ++++|++++
T Consensus         4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~--~~v~~v~~sp--~~~~las~s   77 (330)
T 2hes_X            4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHK--KAIRSVAWRP--HTSLLAAGS   77 (330)
T ss_dssp             CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCC--SCEEEEEECT--TSSEEEEEE
T ss_pred             cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCcc--CCEEEEEECC--CCCEEEEEe
Confidence            4678899999999999999987  9999999999999999875  455555 33 66  4599999999  999999999


Q ss_pred             cCCeEEEEeCCCCCC---CCCCeeee--ecceeeEEEeeeeeccccccccCCCCcceeeccCC-c--eeeecCCCCCC--
Q 021291           84 RDGTVKCWDIENGGL---SSNPSLTI--KTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVG-E--TVDTDSLCDSK--  153 (314)
Q Consensus        84 ~dg~v~iwd~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~--  153 (314)
                      .|++|++||++....   ..+....+  +........+++... ........+...+|++... .  .....+.+|..  
T Consensus        78 ~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~-~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v  156 (330)
T 2hes_X           78 FDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY-YLATCSRDKSVWIWETDESGEEYECISVLQEHSQDV  156 (330)
T ss_dssp             TTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC-EEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCE
T ss_pred             CCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCce
Confidence            999999999964321   01111222  233334444444322 2233444567788888432 1  34455667766  


Q ss_pred             --ceeccCCCceEEEeecCcCeEEEEecCCC--ceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeec
Q 021291          154 --DDVPAEGPKYMAVAGEQLSEVEIWDLNTA--ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE  229 (314)
Q Consensus       154 --~~~~~~~~~~~~~~g~~d~~i~vwd~~~~--~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~  229 (314)
                        ++|+|++..++  +++.|++|++||.+++  +++..+.        +|    ...+.++. |+|+.. +. +|++|+.
T Consensus       157 ~~v~~~p~~~~l~--s~s~D~~i~iW~~~~~~~~~~~~~~--------~h----~~~v~~~~-~~~~~~-~~-~l~s~s~  219 (330)
T 2hes_X          157 KHVIWHPSEALLA--SSSYDDTVRIWKDYDDDWECVAVLN--------GH----EGTVWSSD-FDKTEG-VF-RLCSGSD  219 (330)
T ss_dssp             EEEEECSSSSEEE--EEETTSCEEEEEEETTEEEEEEEEC--------CC----SSCEEEEE-ECCSSS-SC-EEEEEET
T ss_pred             EEEEECCCCCEEE--EEcCCCeEEEEECCCCCeeEEEEcc--------CC----CCcEEEEE-ecCCCC-ee-EEEEEeC
Confidence              89999987443  6777999999998866  5666666        67    45788887 999843 33 7999999


Q ss_pred             CCcEEEEEccCCC-------CceEeeec-CCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCe
Q 021291          230 DGSILVWDIRNPG-------IPLTAMKV-HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST  285 (314)
Q Consensus       230 dg~i~vwd~~~~~-------~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~  285 (314)
                      |++|++||++...       .+...+.. |...|.+++|++++ +|++++.||.|++|+..+++
T Consensus       220 D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~  282 (330)
T 2hes_X          220 DSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGE  282 (330)
T ss_dssp             TSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTE
T ss_pred             CCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCc
Confidence            9999999997521       23444544 89999999999766 79999999999999998774

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.3e-34  Score=238.36  Aligned_cols=253  Identities=15%  Similarity=0.174  Sum_probs=183.4

Q ss_pred             ecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCC--eEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEE
Q 021291           14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH--RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW   91 (314)
Q Consensus        14 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iw   91 (314)
                      ..+|.+.|.+++|+|++++|++|+.|++|+|||+.++  +++..+.+|...  |.+++|+|  ++++|++++.|++|++|
T Consensus        57 ~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~--v~~v~~sp--~~~~l~s~s~D~~v~iw  132 (345)
T 3fm0_A           57 SEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENE--VKSVAWAP--SGNLLATCSRDKSVWVW  132 (345)
T ss_dssp             CSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSC--EEEEEECT--TSSEEEEEETTSCEEEE
T ss_pred             ccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCC--ceEEEEeC--CCCEEEEEECCCeEEEE
Confidence            3689999999999999999999999999999998776  467788888854  99999999  99999999999999999


Q ss_pred             eCCCCCCCC-CCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCc-eeeecCCCCCC----ceeccCCCceEE
Q 021291           92 DIENGGLSS-NPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE-TVDTDSLCDSK----DDVPAEGPKYMA  165 (314)
Q Consensus        92 d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~  165 (314)
                      |++++.... ...+..+........+++... ........+...+|+..... .....+.+|..    ++|+|+++.++ 
T Consensus       133 d~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~-  210 (345)
T 3fm0_A          133 EVDEEDEYECVSVLNSHTQDVKHVVWHPSQE-LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLA-  210 (345)
T ss_dssp             EECTTSCEEEEEEECCCCSCEEEEEECSSSS-CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEE-
T ss_pred             ECCCCCCeEEEEEecCcCCCeEEEEECCCCC-EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEE-
Confidence            998764211 001122233344444444332 22333445667778877654 33456677776    89999997544 


Q ss_pred             EeecCcCeEEEEecCCCc---------------eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecC
Q 021291          166 VAGEQLSEVEIWDLNTAE---------------RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED  230 (314)
Q Consensus       166 ~~g~~d~~i~vwd~~~~~---------------~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~d  230 (314)
                       +++.|++|++||.....               ++..+.        +   .....+.+++ |+|+   +. .|++++.|
T Consensus       211 -s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~---~h~~~v~~v~-~~~~---~~-~l~s~~~d  273 (345)
T 3fm0_A          211 -SCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLS--------G---FHSRTIYDIA-WCQL---TG-ALATACGD  273 (345)
T ss_dssp             -EEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEEC--------S---SCSSCEEEEE-ECTT---TC-CEEEEETT
T ss_pred             -EEeCCCeEEEeccccCCCCccceeeccCCccceeEEec--------C---CCCCcEEEEE-EecC---CC-EEEEEeCC
Confidence             67779999999974322               122222        2   1245788887 9998   44 79999999


Q ss_pred             CcEEEEEccCCC---Cce-----EeeecCCcceEEEEEeCCC-CeEEEecCCCcEEEEecCCCeeeEe
Q 021291          231 GSILVWDIRNPG---IPL-----TAMKVHLEPVLCLSIDESC-NGGISGGADQKIVLYNLDHSTYVLF  289 (314)
Q Consensus       231 g~i~vwd~~~~~---~~~-----~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~i~iw~~~~~~~~~~  289 (314)
                      +.|++|+.+...   .+.     ....+|...|++++|+|++ .+|+|||.||.|++|++.+++.+..
T Consensus       274 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~  341 (345)
T 3fm0_A          274 DAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHH  341 (345)
T ss_dssp             SCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC------
T ss_pred             CeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCccc
Confidence            999999987522   111     2235899999999999987 4899999999999999998876543

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=2.2e-34  Score=234.16  Aligned_cols=265  Identities=15%  Similarity=0.137  Sum_probs=182.3

Q ss_pred             CCCCCceEEecC--CCC--ceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEE
Q 021291            5 PPPPDPVAVLRG--HRA--SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI   80 (314)
Q Consensus         5 ~~~~~~~~~l~~--h~~--~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~   80 (314)
                      ..|..|.++|.+  ..+  .+++|+||+++ +||+| .|++|+|||+++++++..+..+.+...|.+++|+|  ++++|+
T Consensus         8 ~~p~~p~rvldap~~~~d~y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~--~~~~l~   83 (318)
T 4ggc_A            8 YIPSLPDRILDAPEIRNDYYLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK--EGNYLA   83 (318)
T ss_dssp             CCCSSCSEEEECTTCCCCTTCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECT--TSSEEE
T ss_pred             ccCCCCCEEeeCCCCcccccceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECC--CCCEEE
Confidence            455667777764  233  35789999876 77765 59999999999999998887766556799999999  999999


Q ss_pred             EeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----cee
Q 021291           81 SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDV  156 (314)
Q Consensus        81 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  156 (314)
                      +|+.||+|++||+++++.+.    ....+......+..... .............+...........+.+|..    +.+
T Consensus        84 sgs~Dg~v~iw~~~~~~~~~----~~~~h~~~~~~~~~~~~-~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (318)
T 4ggc_A           84 VGTSSAEVQLWDVQQQKRLR----NMTSHSARVGSLSWNSY-ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRW  158 (318)
T ss_dssp             EEETTSEEEEEETTTTEEEE----EEECCSSCEEEEEEETT-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEE
T ss_pred             EEECCCcEEEeecCCceeEE----EecCccceEEEeecCCC-EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEE
Confidence            99999999999999987643    34444333333333322 2222333344445555555555555566665    778


Q ss_pred             ccCCCceEEEeecCcCeEEEEecCCCceeeeeccccc-----------CCC--------CCc-----------------C
Q 021291          157 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSC-----------GGS--------PNF-----------------S  200 (314)
Q Consensus       157 ~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~-----------~~~--------~~h-----------------~  200 (314)
                      .++++.++  +++.|+.|++||+++++..........           ...        .+.                 .
T Consensus       159 ~~~~~~l~--s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~  236 (318)
T 4ggc_A          159 APDGRHLA--SGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA  236 (318)
T ss_dssp             CTTSSEEE--EEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEE
T ss_pred             cCCCCEEE--EEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccc
Confidence            88887544  677799999999987653211100000           000        000                 0


Q ss_pred             CCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEe
Q 021291          201 SKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN  280 (314)
Q Consensus       201 ~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~  280 (314)
                      ......+..+. |+|++.  ..++++|+.|+.|++||+++ ++++.++.+|.+.|++|+|+|++++|+|||.||+|+|||
T Consensus       237 ~~~~~~v~~~~-~~~~~~--~~~~~sg~~d~~i~iwd~~~-~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd  312 (318)
T 4ggc_A          237 VDAHSQVCSIL-WSPHYK--ELISGHGFAQNQLVIWKYPT-MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR  312 (318)
T ss_dssp             EECSSCEEEEE-EETTTT--EEEEEECTTTCCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred             ccceeeeeeee-eccccc--ceEEEEEcCCCEEEEEECCC-CcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence            00112234554 777632  21223455899999999998 899999999999999999999999999999999999999


Q ss_pred             cCCC
Q 021291          281 LDHS  284 (314)
Q Consensus       281 ~~~~  284 (314)
                      +.+.
T Consensus       313 ~~~~  316 (318)
T 4ggc_A          313 CFEL  316 (318)
T ss_dssp             CSCC
T ss_pred             CCCC
Confidence            8764

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.3e-34  Score=241.02  Aligned_cols=257  Identities=19%  Similarity=0.251  Sum_probs=189.9

Q ss_pred             CCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCC----------------cccEEEEEEcccCCCCeE
Q 021291           16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA----------------AHGIVSVATGPSIGLNKV   79 (314)
Q Consensus        16 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~----------------~~~v~~~~~~~~~~~~~l   79 (314)
                      +|.+.|.+++|+|||++||+|+ |+.++||++.+++.+..+..+..                ...|.+++|+|  ++++|
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~--dg~~l  138 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP--DGKFL  138 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECT--TSSEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECC--CCCEE
Confidence            6999999999999999999987 67899999999998888765531                12489999999  99999


Q ss_pred             EEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC---cee
Q 021291           80 ISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK---DDV  156 (314)
Q Consensus        80 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  156 (314)
                      ++|+.|++|++||+++++...  .+..+........+++.... .......+...+|++......... ..+..   ++|
T Consensus       139 ~s~~~d~~i~iwd~~~~~~~~--~~~~h~~~v~~~~~~p~~~~-l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~  214 (393)
T 1erj_A          139 ATGAEDRLIRIWDIENRKIVM--ILQGHEQDIYSLDYFPSGDK-LVSGSGDRTVRIWDLRTGQCSLTL-SIEDGVTTVAV  214 (393)
T ss_dssp             EEEETTSCEEEEETTTTEEEE--EECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEE
T ss_pred             EEEcCCCeEEEEECCCCcEEE--EEccCCCCEEEEEEcCCCCE-EEEecCCCcEEEEECCCCeeEEEE-EcCCCcEEEEE
Confidence            999999999999999876533  23333334444444443322 233444566788888776543322 22222   889


Q ss_pred             cc-CCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEE
Q 021291          157 PA-EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV  235 (314)
Q Consensus       157 ~~-~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~v  235 (314)
                      +| ++. +++ +|+.|+.|++||+++++.+..+.... ....+|    ...+.++. |+|+   |+ +|++|+.|+.|++
T Consensus       215 ~~~~~~-~l~-~~s~d~~v~iwd~~~~~~~~~~~~~~-~~~~~h----~~~v~~v~-~~~~---g~-~l~s~s~d~~v~~  282 (393)
T 1erj_A          215 SPGDGK-YIA-AGSLDRAVRVWDSETGFLVERLDSEN-ESGTGH----KDSVYSVV-FTRD---GQ-SVVSGSLDRSVKL  282 (393)
T ss_dssp             CSTTCC-EEE-EEETTSCEEEEETTTCCEEEEEC-------CCC----SSCEEEEE-ECTT---SS-EEEEEETTSEEEE
T ss_pred             ECCCCC-EEE-EEcCCCcEEEEECCCCcEEEeecccc-cCCCCC----CCCEEEEE-ECCC---CC-EEEEEeCCCEEEE
Confidence            98 554 444 67779999999999998877664210 000134    55788898 9998   55 8999999999999


Q ss_pred             EEccCC-----------CCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEeee
Q 021291          236 WDIRNP-----------GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFGI  291 (314)
Q Consensus       236 wd~~~~-----------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~  291 (314)
                      ||+++.           +.+...+.+|...|.+++|++++.+|++|+.|+.|++||+.+++.+....
T Consensus       283 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~  349 (393)
T 1erj_A          283 WNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ  349 (393)
T ss_dssp             EEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEC
Confidence            999752           23456778999999999999999999999999999999999998776543

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-33  Score=233.68  Aligned_cols=266  Identities=14%  Similarity=0.183  Sum_probs=202.8

Q ss_pred             eEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEE
Q 021291           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC   90 (314)
Q Consensus        11 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~i   90 (314)
                      ...|.+|.+.|++++|+|++++|++|+.||.|++||+.+++.+..+..|...  |.+++|+|  ++++|++++.||.|++
T Consensus        25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~--v~~~~~~~--~~~~l~s~~~dg~i~i  100 (369)
T 3zwl_B           25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGT--IWSIDVDC--FTKYCVTGSADYSIKL  100 (369)
T ss_dssp             EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSC--EEEEEECT--TSSEEEEEETTTEEEE
T ss_pred             cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCc--EEEEEEcC--CCCEEEEEeCCCeEEE
Confidence            3458899999999999999999999999999999999999999999999854  99999999  9999999999999999


Q ss_pred             EeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccC----CCCcceeeccCCce----------eeecCCCCC---C
Q 021291           91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA----NEPKDCYEREVGET----------VDTDSLCDS---K  153 (314)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~----------~~~~~~~~~---~  153 (314)
                      ||+.+++...  .+. .........+++...........    .+...+|++.....          ....+..+.   .
T Consensus       101 wd~~~~~~~~--~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (369)
T 3zwl_B          101 WDVSNGQCVA--TWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDA  177 (369)
T ss_dssp             EETTTCCEEE--EEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCC
T ss_pred             EECCCCcEEE--Eee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccc
Confidence            9999887543  222 22233334444332222211111    14556666644321          011111121   2


Q ss_pred             ---ceeccCCCceEEEeecCcCeEEEEecCC-CceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeec
Q 021291          154 ---DDVPAEGPKYMAVAGEQLSEVEIWDLNT-AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE  229 (314)
Q Consensus       154 ---~~~~~~~~~~~~~~g~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~  229 (314)
                         ++|+|+++.++  +++.|+.|++||+++ .+.+..+.        .|    ...+.++. |+|+   +. +|++++.
T Consensus       178 ~~~~~~~~~~~~l~--~~~~dg~i~i~d~~~~~~~~~~~~--------~~----~~~v~~~~-~~~~---~~-~l~~~~~  238 (369)
T 3zwl_B          178 ATVAGWSTKGKYII--AGHKDGKISKYDVSNNYEYVDSID--------LH----EKSISDMQ-FSPD---LT-YFITSSR  238 (369)
T ss_dssp             EEEEEECGGGCEEE--EEETTSEEEEEETTTTTEEEEEEE--------CC----SSCEEEEE-ECTT---SS-EEEEEET
T ss_pred             eeEEEEcCCCCEEE--EEcCCCEEEEEECCCCcEeEEEEe--------cC----CCceeEEE-ECCC---CC-EEEEecC
Confidence               88999987554  566789999999998 67777776        45    44788887 9998   54 8999999


Q ss_pred             CCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCC--------------cEEEEecCCCeeeEee-----
Q 021291          230 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQ--------------KIVLYNLDHSTYVLFG-----  290 (314)
Q Consensus       230 dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg--------------~i~iw~~~~~~~~~~~-----  290 (314)
                      |+.|++||+++ ++.+..+. +...+..++|+|++.++++++.++              .+++||+.+++.+...     
T Consensus       239 d~~i~v~d~~~-~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~  316 (369)
T 3zwl_B          239 DTNSFLVDVST-LQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFG  316 (369)
T ss_dssp             TSEEEEEETTT-CCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSS
T ss_pred             CceEEEEECCC-Cceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccC
Confidence            99999999998 77777777 788999999999999999999988              8999999999877653     


Q ss_pred             --eeeeecCCCceece
Q 021291          291 --IGFVCDQEGNKFGT  304 (314)
Q Consensus       291 --~~~~~~~~~~~~~~  304 (314)
                        ..++++|++..+++
T Consensus       317 ~v~~~~~s~~~~~l~s  332 (369)
T 3zwl_B          317 PLNTVAISPQGTSYAS  332 (369)
T ss_dssp             CEEEEEECTTSSEEEE
T ss_pred             cEEEEEECCCCCEEEE
Confidence              34567788876665

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=5.4e-34  Score=240.86  Aligned_cols=252  Identities=15%  Similarity=0.207  Sum_probs=190.4

Q ss_pred             CCceEEe--cCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC
Q 021291            8 PDPVAVL--RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD   85 (314)
Q Consensus         8 ~~~~~~l--~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (314)
                      ++.++.+  .+|...|++++|+|+|++||+|+.||.|+|||+++++++..+.+|...  |.++++++    ..|++|+.|
T Consensus       135 g~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~--v~~~s~~~----~~l~sgs~d  208 (420)
T 4gga_A          135 GDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR--VGSLSWNS----YILSSGSRS  208 (420)
T ss_dssp             CCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC--EEEEEEET----TEEEEEETT
T ss_pred             CCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCc--eEEEeeCC----CEEEEEeCC
Confidence            4555554  478889999999999999999999999999999999999999999854  99988865    799999999


Q ss_pred             CeEEEEeCCCCCCCCCCeeeeeccee--eEEEeeeeeccccccccCCCCcceeeccCCce---eeecCCCCCC----cee
Q 021291           86 GTVKCWDIENGGLSSNPSLTIKTNSY--HFCKLSLVKEPYANAKQANEPKDCYEREVGET---VDTDSLCDSK----DDV  156 (314)
Q Consensus        86 g~v~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~----~~~  156 (314)
                      +.+++||.......   ...+..+..  ....+.+... ........+...+|+......   .......|..    ++|
T Consensus       209 ~~i~~~d~~~~~~~---~~~~~~h~~~~~~~~~~~~g~-~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~  284 (420)
T 4gga_A          209 GHIHHHDVRVAEHH---VATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW  284 (420)
T ss_dssp             SEEEEEETTSSSCE---EEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEE
T ss_pred             CceeEeeeccccee---eEEecccccceeeeeecCCCC-eeeeeeccccceEEeeccccccceeeeeecccCCceeeeee
Confidence            99999999875432   223333322  2222222221 222333445566777655432   2223334444    889


Q ss_pred             ccCCCceEEE-eecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEE--eecCCcE
Q 021291          157 PAEGPKYMAV-AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA--GYEDGSI  233 (314)
Q Consensus       157 ~~~~~~~~~~-~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~--g~~dg~i  233 (314)
                      +|.+..++++ +|+.|++|++||+++++....+.        .|     ..+.++. |+|+   +. .+++  |+.|+.|
T Consensus       285 ~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~--------~~-----~~v~~~~-~~~~---~~-~lv~~sg~~d~~I  346 (420)
T 4gga_A          285 CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD--------AH-----SQVCSIL-WSPH---YK-ELISGHGFAQNQL  346 (420)
T ss_dssp             CTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE--------CS-----SCEEEEE-EETT---TT-EEEEEECTTTCCE
T ss_pred             CCCcccEEEEEeecCCCEEEEEeCCccccceeec--------cc-----cceeeee-ecCC---CC-eEEEEEecCCCEE
Confidence            9998887765 46789999999999999888877        22     3566776 9998   44 4444  4479999


Q ss_pred             EEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeE
Q 021291          234 LVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVL  288 (314)
Q Consensus       234 ~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~  288 (314)
                      +|||+++ ++++.++.+|.+.|++|+|+|+|.+|+|||.|++|+|||+.......
T Consensus       347 ~iwd~~~-~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~  400 (420)
T 4gga_A          347 VIWKYPT-MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPAR  400 (420)
T ss_dssp             EEEETTT-CCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC-
T ss_pred             EEEECCC-CcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccc
Confidence            9999998 89999999999999999999999999999999999999997665443

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=4.5e-34  Score=234.77  Aligned_cols=266  Identities=15%  Similarity=0.105  Sum_probs=192.7

Q ss_pred             ceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCC----eEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC
Q 021291           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH----RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD   85 (314)
Q Consensus        10 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (314)
                      ....+.+|.+.|++++|+|++++|++|+.||.|++||+.++    +....+.+|...  |.+++|+|..++++|++++.|
T Consensus         3 ~~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~d~~~l~s~~~d   80 (351)
T 3f3f_A            3 MQPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSS--IVAIDWASPEYGRIIASASYD   80 (351)
T ss_dssp             CCCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSC--EEEEEECCGGGCSEEEEEETT
T ss_pred             ccccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCc--EEEEEEcCCCCCCEEEEEcCC
Confidence            44567899999999999999999999999999999999876    467777888854  999999983337899999999


Q ss_pred             CeEEEEeCCCCCCCC-----CCeeeeec--ceeeEEEeeeee-ccccccccCCCCcceeeccCCceeee--------c--
Q 021291           86 GTVKCWDIENGGLSS-----NPSLTIKT--NSYHFCKLSLVK-EPYANAKQANEPKDCYEREVGETVDT--------D--  147 (314)
Q Consensus        86 g~v~iwd~~~~~~~~-----~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--------~--  147 (314)
                      |+|++||+++++...     ++...+..  .......+.+.. ..........+...+|++........        .  
T Consensus        81 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  160 (351)
T 3f3f_A           81 KTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLS  160 (351)
T ss_dssp             SCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCS
T ss_pred             CeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccc
Confidence            999999998874321     11222222  233333343331 12233344556677888765542211        0  


Q ss_pred             --CCCCCC----ceeccC---CCceEEEeecCcCeEEEEecCCCce--eeeecccccCCCCCcCCCCCceeeeEEEecCC
Q 021291          148 --SLCDSK----DDVPAE---GPKYMAVAGEQLSEVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPS  216 (314)
Q Consensus       148 --~~~~~~----~~~~~~---~~~~~~~~g~~d~~i~vwd~~~~~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~  216 (314)
                        ...+..    ++|+|+   +. .++ +++.|+.+.+|+...++.  +..+.        +|    ...+.++. |+|+
T Consensus       161 ~~~~~~~~~~~~~~~~p~~~~~~-~l~-~~~~~~~~~~~~~~~~~~~~~~~~~--------~h----~~~i~~~~-~~p~  225 (351)
T 3f3f_A          161 IPPANHLQSDFCLSWCPSRFSPE-KLA-VSALEQAIIYQRGKDGKLHVAAKLP--------GH----KSLIRSIS-WAPS  225 (351)
T ss_dssp             CCCSSCSCCCEEEEECCCSSSCC-EEE-EEETTEEEEEEECTTSCEEEEEECC--------CC----CSCEEEEE-ECCC
T ss_pred             cccCCcccceeEEEeccCCCCCc-EEE-EecCCCcEEEEccCCCceeeeeecC--------CC----CcceeEEE-ECCC
Confidence              112222    888887   54 444 455689998888777665  44444        55    45788888 9998


Q ss_pred             CCCCceEEEEeecCCcEEEEEccCC---------------------------------------------CCceEeeecC
Q 021291          217 KSQGFVNVLAGYEDGSILVWDIRNP---------------------------------------------GIPLTAMKVH  251 (314)
Q Consensus       217 ~~~g~~~l~~g~~dg~i~vwd~~~~---------------------------------------------~~~~~~~~~h  251 (314)
                      +.....+|++|+.||.|++||++..                                             .+++..+.+|
T Consensus       226 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  305 (351)
T 3f3f_A          226 IGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDH  305 (351)
T ss_dssp             SSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTT
T ss_pred             CCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecc
Confidence            4211138999999999999999862                                             1566778899


Q ss_pred             CcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEeeee
Q 021291          252 LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFGIG  292 (314)
Q Consensus       252 ~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~  292 (314)
                      ...|++++|+|++++|++++.||.|++|++.+++.+..+..
T Consensus       306 ~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~  346 (351)
T 3f3f_A          306 NGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMSV  346 (351)
T ss_dssp             SSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEEE
T ss_pred             cccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhheee
Confidence            99999999999999999999999999999999877665443

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.6e-34  Score=233.09  Aligned_cols=253  Identities=14%  Similarity=0.168  Sum_probs=176.4

Q ss_pred             CceEEe-cC-CCCceeEEEEccCCCEEEEecCCCeEEEEeCCC-------CeEEEEEeccCCcccEEEEEEcccCCCCeE
Q 021291            9 DPVAVL-RG-HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ-------HRTVSSSWVHSAAHGIVSVATGPSIGLNKV   79 (314)
Q Consensus         9 ~~~~~l-~~-h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l   79 (314)
                      +.+..+ .+ |.+.|.+++|+|++++|++|+.|++|+|||++.       .+.+..+.+|...  |.+++|+|  ++++|
T Consensus        47 ~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~--V~~v~~sp--~g~~l  122 (330)
T 2hes_X           47 TLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENE--VKGVAWSN--DGYYL  122 (330)
T ss_dssp             EEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----C--EEEEEECT--TSCEE
T ss_pred             EEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCc--EEEEEECC--CCCEE
Confidence            345556 45 999999999999999999999999999999853       3567788888854  99999999  99999


Q ss_pred             EEeecCCeEEEEeCCCCCCCCCCeeee--ecceeeEEEeeeeeccccccccCCCCcceeeccCCc-eeeecCCCCCC---
Q 021291           80 ISQGRDGTVKCWDIENGGLSSNPSLTI--KTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE-TVDTDSLCDSK---  153 (314)
Q Consensus        80 ~s~~~dg~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---  153 (314)
                      ++|+.|++|++||++......+....+  +........+++... ........+...+|+..... .....+.+|..   
T Consensus       123 as~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~  201 (330)
T 2hes_X          123 ATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA-LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVW  201 (330)
T ss_dssp             EEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEE
T ss_pred             EEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEE
Confidence            999999999999995432111112222  333444444544332 22334445667788776543 34556677876   


Q ss_pred             -ceeccCCCceEEEeecCcCeEEEEecCCC--------ceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEE
Q 021291          154 -DDVPAEGPKYMAVAGEQLSEVEIWDLNTA--------ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNV  224 (314)
Q Consensus       154 -~~~~~~~~~~~~~~g~~d~~i~vwd~~~~--------~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l  224 (314)
                       ++|+|++....+++|+.|++|++||++.+        .....+..       .|    ...+.++. |+|+   +  +|
T Consensus       202 ~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~-------~h----~~~v~~v~-~s~~---~--~l  264 (330)
T 2hes_X          202 SSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPD-------VH----KRQVYNVA-WGFN---G--LI  264 (330)
T ss_dssp             EEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCS-------CC----SSCEEEEE-ECTT---S--CE
T ss_pred             EEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccc-------cc----ccceEEEE-EcCC---C--EE
Confidence             88999854334447888999999998754        22233321       24    45788887 9964   3  69


Q ss_pred             EEeecCCcEEEEEccCCCC--ceE-eeecCCc-ceEEEEEeC--CCCeEEEecCCCcEEEEecCCC
Q 021291          225 LAGYEDGSILVWDIRNPGI--PLT-AMKVHLE-PVLCLSIDE--SCNGGISGGADQKIVLYNLDHS  284 (314)
Q Consensus       225 ~~g~~dg~i~vwd~~~~~~--~~~-~~~~h~~-~v~~~~~~~--~~~~l~s~s~dg~i~iw~~~~~  284 (314)
                      ++++.||.|++||... +.  .+. .+.+|.. .|++++|+|  ++.+|++|+.||.|++|+++..
T Consensus       265 ~s~~~dg~v~iw~~~~-~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~~  329 (330)
T 2hes_X          265 ASVGADGVLAVYEEVD-GEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEKA  329 (330)
T ss_dssp             EEEETTSCEEEEEEET-TEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC---
T ss_pred             EEEeCCCEEEEEEcCC-CceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEeccC
Confidence            9999999999999986 42  232 3467887 899999998  7889999999999999998753

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.3e-35  Score=243.37  Aligned_cols=262  Identities=16%  Similarity=0.162  Sum_probs=189.3

Q ss_pred             CCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCC--CCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC
Q 021291            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTV--QHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD   85 (314)
Q Consensus         8 ~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (314)
                      ++++..+++|.+.|++++|+|++++|++|+.||.|+|||+.  +++.+..+.+|...  |.+++|++..++++|++++.|
T Consensus         1 G~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~~~l~s~~~d   78 (379)
T 3jrp_A            1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGP--VWRVDWAHPKFGTILASCSYD   78 (379)
T ss_dssp             ----CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC--EEEEEECCGGGCSEEEEEETT
T ss_pred             CCccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCc--EEEEEeCCCCCCCEEEEeccC
Confidence            35678899999999999999999999999999999999998  55677788888854  999999972238999999999


Q ss_pred             CeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeee-ccccccccCCCCcceeeccCCce-eeecCCCCCC----ceecc-
Q 021291           86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK-EPYANAKQANEPKDCYEREVGET-VDTDSLCDSK----DDVPA-  158 (314)
Q Consensus        86 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~-  158 (314)
                      |.|++||+++++......+..+........+++.. ..........+...+|++..... ....+..|..    ++|+| 
T Consensus        79 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  158 (379)
T 3jrp_A           79 GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA  158 (379)
T ss_dssp             SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCC
T ss_pred             CEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCc
Confidence            99999999987522111222233344444444432 22334445556778888876632 2223344544    88998 


Q ss_pred             ------------CCCceEEEeecCcCeEEEEecCCCcee----eeecccccCCCCCcCCCCCceeeeEEEecCCCCCCce
Q 021291          159 ------------EGPKYMAVAGEQLSEVEIWDLNTAERC----TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFV  222 (314)
Q Consensus       159 ------------~~~~~~~~~g~~d~~i~vwd~~~~~~~----~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~  222 (314)
                                  ++.. ++ +++.|+.|++||++++...    ..+.        +|    ...+.++. |+|+...+. 
T Consensus       159 ~~~~~~~~~~~~~~~~-l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~--------~h----~~~v~~~~-~sp~~~~~~-  222 (379)
T 3jrp_A          159 TIEEDGEHNGTKESRK-FV-TGGADNLVKIWKYNSDAQTYVLESTLE--------GH----SDWVRDVA-WSPTVLLRS-  222 (379)
T ss_dssp             C----------CTTCE-EE-EEETTSCEEEEEEETTTTEEEEEEEEC--------CC----SSCEEEEE-ECCCCSSSE-
T ss_pred             cccccccccCCCCCCE-EE-EEeCCCeEEEEEecCCCcceeeEEEEe--------cc----cCcEeEEE-ECCCCCCCC-
Confidence                        4553 43 5677999999999876533    3344        45    45788887 999831123 


Q ss_pred             EEEEeecCCcEEEEEccCCCCc----eEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeee
Q 021291          223 NVLAGYEDGSILVWDIRNPGIP----LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYV  287 (314)
Q Consensus       223 ~l~~g~~dg~i~vwd~~~~~~~----~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~  287 (314)
                      +|++++.||.|++||++.....    +.....|...|++++|+|++.+|++++.||.|++|+++.+...
T Consensus       223 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~  291 (379)
T 3jrp_A          223 YLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKW  291 (379)
T ss_dssp             EEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEE
T ss_pred             eEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCcc
Confidence            9999999999999999973221    2222348889999999999999999999999999999865443

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=6.4e-34  Score=238.54  Aligned_cols=259  Identities=17%  Similarity=0.212  Sum_probs=199.0

Q ss_pred             CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCe------EEEEEeccCCcccEEEEEEcccCC----C--
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR------TVSSSWVHSAAHGIVSVATGPSIG----L--   76 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~----~--   76 (314)
                      ...+.+++|.+.|++++|+|  ++|++|+.||.|++||+.+++      .+..+..|...  |.+++|+|  +    +  
T Consensus         7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~--~~~~~g~~   80 (397)
T 1sq9_A            7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSG--LHHVDVLQ--AIERDAFE   80 (397)
T ss_dssp             EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTC--EEEEEEEE--EEETTTEE
T ss_pred             hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCc--EEEEEEec--ccccCCcc
Confidence            45678899999999999998  799999999999999999887      78888888854  99999999  8    8  


Q ss_pred             -CeEEEeecCCeEEEEeCCCCCCCCCC-eeeeec-------ceeeEEEee----eeeccccccccCCCCcceeeccC---
Q 021291           77 -NKVISQGRDGTVKCWDIENGGLSSNP-SLTIKT-------NSYHFCKLS----LVKEPYANAKQANEPKDCYEREV---  140 (314)
Q Consensus        77 -~~l~s~~~dg~v~iwd~~~~~~~~~~-~~~~~~-------~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~---  140 (314)
                       .+|++++.||.|++||+.+++..... ...+..       .......+.    +............+...+|++..   
T Consensus        81 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  160 (397)
T 1sq9_A           81 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD  160 (397)
T ss_dssp             EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred             ccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccc
Confidence             99999999999999999987641111 112222       334444444    33322133344556778888876   


Q ss_pred             ---Cceee----ecC-------CCCCC----ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCC---c
Q 021291          141 ---GETVD----TDS-------LCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPN---F  199 (314)
Q Consensus       141 ---~~~~~----~~~-------~~~~~----~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~---h  199 (314)
                         .....    ..+       ..|..    ++|+|++  +++ +++.|+.|++||+++++.+..+.        .   |
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~-~~~~dg~i~i~d~~~~~~~~~~~--------~~~~h  229 (397)
T 1sq9_A          161 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIA-TGFNNGTVQISELSTLRPLYNFE--------SQHSM  229 (397)
T ss_dssp             HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEE-EECTTSEEEEEETTTTEEEEEEE--------CCC--
T ss_pred             ccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEE-EEeCCCcEEEEECCCCceeEEEe--------ccccc
Confidence               33221    011       22333    8999998  443 57779999999999999888887        4   4


Q ss_pred             CCCCCceeeeEEEecCCCCCCceEEEEeecC---CcEEEEEccCCCCceEeeec-------------CCcceEEEEEeCC
Q 021291          200 SSKGRGMCMAVQAYLPSKSQGFVNVLAGYED---GSILVWDIRNPGIPLTAMKV-------------HLEPVLCLSIDES  263 (314)
Q Consensus       200 ~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~d---g~i~vwd~~~~~~~~~~~~~-------------h~~~v~~~~~~~~  263 (314)
                      .. ....+.++. |+|+   +. +|++++.|   +.|++||+++ ++++..+.+             |...|.+++|+|+
T Consensus       230 ~~-~~~~i~~i~-~~~~---~~-~l~~~~~d~~~g~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  302 (397)
T 1sq9_A          230 IN-NSNSIRSVK-FSPQ---GS-LLAIAHDSNSFGCITLYETEF-GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS  302 (397)
T ss_dssp             -C-CCCCEEEEE-ECSS---TT-EEEEEEEETTEEEEEEEETTT-CCEEEEECBC--------CCBSBSSCEEEEEECSS
T ss_pred             cc-cCCccceEE-ECCC---CC-EEEEEecCCCCceEEEEECCC-CcccceeccCcccccccccccccCCcEEEEEECCC
Confidence            11 134678887 9998   55 89999999   9999999998 788889988             9999999999999


Q ss_pred             CCeEEEecCCCcEEEEecCCCeeeEeee
Q 021291          264 CNGGISGGADQKIVLYNLDHSTYVLFGI  291 (314)
Q Consensus       264 ~~~l~s~s~dg~i~iw~~~~~~~~~~~~  291 (314)
                      +.+|++++.||.|++||+++++.+..+.
T Consensus       303 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~  330 (397)
T 1sq9_A          303 GETLCSAGWDGKLRFWDVKTKERITTLN  330 (397)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             CCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence            9999999999999999999998776655

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-32  Score=223.43  Aligned_cols=265  Identities=14%  Similarity=0.204  Sum_probs=199.7

Q ss_pred             CCCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC
Q 021291            6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD   85 (314)
Q Consensus         6 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (314)
                      .+.++++++++|.+.|++++| +++++|++|+.||.|++||+.+++....+..|..  .|.+++|+|  ++++|++++.|
T Consensus         6 ~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~--~v~~~~~~~--~~~~l~~~~~d   80 (313)
T 3odt_A            6 TGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQG--FLNSVCYDS--EKELLLFGGKD   80 (313)
T ss_dssp             CCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSS--CEEEEEEET--TTTEEEEEETT
T ss_pred             ccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCc--cEEEEEECC--CCCEEEEecCC
Confidence            344788999999999999999 9999999999999999999999999999988884  499999999  99999999999


Q ss_pred             CeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceecc-CC
Q 021291           86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPA-EG  160 (314)
Q Consensus        86 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~  160 (314)
                      |.|++|++....... +...+..+......+... ..........+...+|+   .......+..|..    +++.| ++
T Consensus        81 g~i~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~~~d---~~~~~~~~~~~~~~v~~~~~~~~~~  155 (313)
T 3odt_A           81 TMINGVPLFATSGED-PLYTLIGHQGNVCSLSFQ-DGVVISGSWDKTAKVWK---EGSLVYNLQAHNASVWDAKVVSFSE  155 (313)
T ss_dssp             SCEEEEETTCCTTSC-C-CEECCCSSCEEEEEEE-TTEEEEEETTSEEEEEE---TTEEEEEEECCSSCEEEEEEEETTT
T ss_pred             CeEEEEEeeecCCCC-cccchhhcccCEEEEEec-CCEEEEEeCCCCEEEEc---CCcEEEecccCCCceeEEEEccCCC
Confidence            999999998754221 122333333333333332 22333344445566666   3333334444544    67777 55


Q ss_pred             CceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccC
Q 021291          161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (314)
Q Consensus       161 ~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~  240 (314)
                      + .++ +++.|+.|++||  ..+....+..       .|    ...+.++. |+|+   +  .+++++.||.|++||+++
T Consensus       156 ~-~l~-~~~~d~~i~i~d--~~~~~~~~~~-------~~----~~~i~~~~-~~~~---~--~~~~~~~dg~i~i~d~~~  214 (313)
T 3odt_A          156 N-KFL-TASADKTIKLWQ--NDKVIKTFSG-------IH----NDVVRHLA-VVDD---G--HFISCSNDGLIKLVDMHT  214 (313)
T ss_dssp             T-EEE-EEETTSCEEEEE--TTEEEEEECS-------SC----SSCEEEEE-EEET---T--EEEEEETTSEEEEEETTT
T ss_pred             C-EEE-EEECCCCEEEEe--cCceEEEEec-------cC----cccEEEEE-EcCC---C--eEEEccCCCeEEEEECCc
Confidence            5 444 566789999999  3445555551       13    45788887 9987   4  488999999999999998


Q ss_pred             CCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe-------eeeeeecCCCceec
Q 021291          241 PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF-------GIGFVCDQEGNKFG  303 (314)
Q Consensus       241 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~-------~~~~~~~~~~~~~~  303 (314)
                       ++++..+.+|...|++++|+|++ .|++++.||.|++||+++++.+..       +..+.+++++..+.
T Consensus       215 -~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  282 (313)
T 3odt_A          215 -GDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDIIV  282 (313)
T ss_dssp             -CCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCEEE
T ss_pred             -hhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCEEE
Confidence             88999999999999999999999 589999999999999999987664       34455677776443

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=5.5e-33  Score=248.89  Aligned_cols=252  Identities=15%  Similarity=0.218  Sum_probs=194.8

Q ss_pred             ceEEecCCCCceeEEEEccC-CCEEEEecCCCeEEEEeCCC-----CeEEEEEeccCCcccEEEEEEcccCCCCeEEEee
Q 021291           10 PVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQ-----HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG   83 (314)
Q Consensus        10 ~~~~l~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iwd~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (314)
                      ....+++|.+.|++++|+|+ +++|+||+.||+|++||+.+     +.....+.+|...  |.+++|+|  ++++|++|+
T Consensus       374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~--v~~v~~s~--~g~~l~sgs  449 (694)
T 3dm0_A          374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHF--VEDVVLSS--DGQFALSGS  449 (694)
T ss_dssp             EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSC--EEEEEECT--TSSEEEEEE
T ss_pred             hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCc--EEEEEECC--CCCEEEEEe
Confidence            34578999999999999986 47999999999999999875     3456778889855  99999999  999999999


Q ss_pred             cCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceee--ecCCCCCC----ceec
Q 021291           84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVD--TDSLCDSK----DDVP  157 (314)
Q Consensus        84 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----~~~~  157 (314)
                      .||+|++||+.++....  .+..+........+++.... .......+...+|+........  ....+|..    ++|+
T Consensus       450 ~Dg~v~vwd~~~~~~~~--~~~~h~~~v~~~~~s~~~~~-l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~  526 (694)
T 3dm0_A          450 WDGELRLWDLAAGVSTR--RFVGHTKDVLSVAFSLDNRQ-IVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFS  526 (694)
T ss_dssp             TTSEEEEEETTTTEEEE--EEECCSSCEEEEEECTTSSC-EEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEEC
T ss_pred             CCCcEEEEECCCCccee--EEeCCCCCEEEEEEeCCCCE-EEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEe
Confidence            99999999999886543  33334444455555544322 2233445667777765443322  22345655    8899


Q ss_pred             cCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEE
Q 021291          158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD  237 (314)
Q Consensus       158 ~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd  237 (314)
                      |++...++++++.|++|++||+++++....+.        +|    .+.+.++. |+|+   ++ +|++|+.||.|++||
T Consensus       527 ~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~--------~h----~~~v~~v~-~spd---g~-~l~sg~~Dg~i~iwd  589 (694)
T 3dm0_A          527 PNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA--------GH----TGYVSTVA-VSPD---GS-LCASGGKDGVVLLWD  589 (694)
T ss_dssp             SCSSSCEEEEEETTSCEEEEETTTCCEEEEEC--------CC----SSCEEEEE-ECTT---SS-EEEEEETTSBCEEEE
T ss_pred             CCCCcceEEEEeCCCeEEEEECCCCcEEEEEc--------CC----CCCEEEEE-EeCC---CC-EEEEEeCCCeEEEEE
Confidence            98754344478889999999999999888887        67    45788887 9998   55 999999999999999


Q ss_pred             ccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeE
Q 021291          238 IRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVL  288 (314)
Q Consensus       238 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~  288 (314)
                      +++ ++++..+.. ...|.+++|+|++.+|++++ |+.|++||+++++.+.
T Consensus       590 ~~~-~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~  637 (694)
T 3dm0_A          590 LAE-GKKLYSLEA-NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVE  637 (694)
T ss_dssp             TTT-TEEEECCBC-SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEE
T ss_pred             CCC-CceEEEecC-CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChh
Confidence            998 777777764 56899999999998777665 5669999999987654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2e-33  Score=256.09  Aligned_cols=268  Identities=15%  Similarity=0.157  Sum_probs=214.2

Q ss_pred             CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v   88 (314)
                      +..+.+.+|.+.|++++|+|++++|++|+.||.|+|||+.+++.+..+..|...  |.+++|+|  ++++|++++.||.|
T Consensus         4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~--v~~~~~s~--~~~~l~~~~~dg~i   79 (814)
T 3mkq_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETP--VRAGKFIA--RKNWIIVGSDDFRI   79 (814)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC--EEEEEEEG--GGTEEEEEETTSEE
T ss_pred             ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCc--EEEEEEeC--CCCEEEEEeCCCeE
Confidence            567899999999999999999999999999999999999999999999999854  99999999  99999999999999


Q ss_pred             EEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceecc-CCCce
Q 021291           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPA-EGPKY  163 (314)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~  163 (314)
                      ++||+.+++...  .+..+........+++.... .......+...+|++.........+.+|..    ++|+| ++. .
T Consensus        80 ~vw~~~~~~~~~--~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~  155 (814)
T 3mkq_A           80 RVFNYNTGEKVV--DFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS-T  155 (814)
T ss_dssp             EEEETTTCCEEE--EEECCSSCEEEEEECSSSSE-EEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEE-E
T ss_pred             EEEECCCCcEEE--EEecCCCCEEEEEEeCCCCE-EEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCC-E
Confidence            999999887543  33333344444555544332 233445567788888877666666666665    89999 554 4


Q ss_pred             EEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCC
Q 021291          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI  243 (314)
Q Consensus       164 ~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~  243 (314)
                      ++ +++.||.|++||+.+++....+.        .+   ....+..+. |+|.. ++. ++++++.||.|++||+++ ++
T Consensus       156 l~-~~~~dg~v~vwd~~~~~~~~~~~--------~~---~~~~v~~~~-~~~~~-~~~-~l~~~~~dg~i~~~d~~~-~~  219 (814)
T 3mkq_A          156 FA-SGCLDRTVKVWSLGQSTPNFTLT--------TG---QERGVNYVD-YYPLP-DKP-YMITASDDLTIKIWDYQT-KS  219 (814)
T ss_dssp             EE-EEETTSEEEEEETTCSSCSEEEE--------CC---CTTCCCEEE-ECCST-TCC-EEEEECTTSEEEEEETTT-TE
T ss_pred             EE-EEeCCCeEEEEECCCCcceeEEe--------cC---CCCCEEEEE-EEECC-CCC-EEEEEeCCCEEEEEECCC-Cc
Confidence            44 56679999999999888777766        22   124566776 99831 155 899999999999999998 88


Q ss_pred             ceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEee-------eeeeecCCCc
Q 021291          244 PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFG-------IGFVCDQEGN  300 (314)
Q Consensus       244 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~-------~~~~~~~~~~  300 (314)
                      ++..+.+|...|.+++|+|++.+|++++.||.|++||+.+++.+...       ..++++|++.
T Consensus       220 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  283 (814)
T 3mkq_A          220 CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGR  283 (814)
T ss_dssp             EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCG
T ss_pred             EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCC
Confidence            89999999999999999999999999999999999999988776542       3345566665

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.2e-34  Score=245.82  Aligned_cols=219  Identities=15%  Similarity=0.197  Sum_probs=166.8

Q ss_pred             CceEEecCCCCceeEEEEcc-CCCEEEEecCCCeEEEEeCCCCeEEE--EEeccCCcccEEEEEEcccCCCCeEEEeecC
Q 021291            9 DPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVS--SSWVHSAAHGIVSVATGPSIGLNKVISQGRD   85 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (314)
                      +......+|...|+||+|+| ++++||+|+.||.|+|||+.+++...  .+.+|.  ..|.+|+|+|. ++++|++|+.|
T Consensus       110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~--~~V~~l~f~p~-~~~~l~s~s~D  186 (435)
T 4e54_B          110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAG--GSITGLKFNPL-NTNQFYASSME  186 (435)
T ss_dssp             TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSS--CCCCEEEECSS-CTTEEEEECSS
T ss_pred             eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCC--CCEEEEEEeCC-CCCEEEEEeCC
Confidence            45667778999999999999 67899999999999999998765444  445676  55999999984 56899999999


Q ss_pred             CeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEE
Q 021291           86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA  165 (314)
Q Consensus        86 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (314)
                      |+|++||++++....  ...........                                      ..++|+|++..++ 
T Consensus       187 ~~v~iwd~~~~~~~~--~~~~~~~~~~~--------------------------------------~~~~~~~~~~~l~-  225 (435)
T 4e54_B          187 GTTRLQDFKGNILRV--FASSDTINIWF--------------------------------------CSLDVSASSRMVV-  225 (435)
T ss_dssp             SCEEEEETTSCEEEE--EECCSSCSCCC--------------------------------------CCEEEETTTTEEE-
T ss_pred             CEEEEeeccCCceeE--EeccCCCCccE--------------------------------------EEEEECCCCCEEE-
Confidence            999999998653210  00000000000                                      0056889887443 


Q ss_pred             EeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCC--
Q 021291          166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI--  243 (314)
Q Consensus       166 ~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~--  243 (314)
                       +|+.||.|++||++. +.+..+.        +|    ...+.++. |+|+   +..++++|+.|+.|++||+++...  
T Consensus       226 -~g~~dg~i~~wd~~~-~~~~~~~--------~h----~~~v~~v~-~~p~---~~~~~~s~s~d~~v~iwd~~~~~~~~  287 (435)
T 4e54_B          226 -TGDNVGNVILLNMDG-KELWNLR--------MH----KKKVTHVA-LNPC---CDWFLATASVDQTVKIWDLRQVRGKA  287 (435)
T ss_dssp             -EECSSSBEEEEESSS-CBCCCSB--------CC----SSCEEEEE-ECTT---CSSEEEEEETTSBCCEEETTTCCSSS
T ss_pred             -EEeCCCcEeeeccCc-ceeEEEe--------cc----cceEEeee-ecCC---CceEEEEecCcceeeEEecccccccc
Confidence             677899999999874 4455555        56    44788887 9998   333899999999999999987322  


Q ss_pred             ceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291          244 PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF  289 (314)
Q Consensus       244 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~  289 (314)
                      .+....+|..+|++++|+|++.+|++++.||.|++||+.+++....
T Consensus       288 ~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~  333 (435)
T 4e54_B          288 SFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLG  333 (435)
T ss_dssp             CCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEE
T ss_pred             eEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceE
Confidence            2233468999999999999999999999999999999998876554

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.7e-32  Score=224.55  Aligned_cols=261  Identities=16%  Similarity=0.177  Sum_probs=197.0

Q ss_pred             EecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCe---EEEEEe--ccCCcccEEEEEEcccCCCCeEEEeecCCe
Q 021291           13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR---TVSSSW--VHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (314)
Q Consensus        13 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~---~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (314)
                      ...+|.+.|++++|+|++++|++++ ||.|++||+.+++   .+..+.  .|.  ..|.+++|+|  ++++|++++.|+.
T Consensus        46 ~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~l~~~~~d~~  120 (337)
T 1gxr_A           46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRD--NYIRSCKLLP--DGCTLIVGGEAST  120 (337)
T ss_dssp             EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTT--SBEEEEEECT--TSSEEEEEESSSE
T ss_pred             eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCC--CcEEEEEEcC--CCCEEEEEcCCCc
Confidence            3447999999999999999999999 9999999998764   333444  455  5599999999  9999999999999


Q ss_pred             EEEEeCCCCCCCCCCeeeeecc--eeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCC
Q 021291           88 VKCWDIENGGLSSNPSLTIKTN--SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGP  161 (314)
Q Consensus        88 v~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  161 (314)
                      |++||+++++...  ...+..+  ......+++... ........+...+|++....... .+..|..    ++|+|+++
T Consensus       121 i~~~d~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~v~~~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~  196 (337)
T 1gxr_A          121 LSIWDLAAPTPRI--KAELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQTLVR-QFQGHTDGASCIDISNDGT  196 (337)
T ss_dssp             EEEEECCCC--EE--EEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEE-EECCCSSCEEEEEECTTSS
T ss_pred             EEEEECCCCCcce--eeecccCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCceee-eeecccCceEEEEECCCCC
Confidence            9999999876322  2233322  233333333221 22233445667788887765443 3444544    89999987


Q ss_pred             ceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCC
Q 021291          162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP  241 (314)
Q Consensus       162 ~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~  241 (314)
                      .++  +++.|+.|++||+++++.+..+.             ....+.++. |+|+   ++ ++++++.++.|++||++. 
T Consensus       197 ~l~--~~~~dg~i~~~d~~~~~~~~~~~-------------~~~~v~~~~-~s~~---~~-~l~~~~~~~~i~~~~~~~-  255 (337)
T 1gxr_A          197 KLW--TGGLDNTVRSWDLREGRQLQQHD-------------FTSQIFSLG-YCPT---GE-WLAVGMESSNVEVLHVNK-  255 (337)
T ss_dssp             EEE--EEETTSEEEEEETTTTEEEEEEE-------------CSSCEEEEE-ECTT---SS-EEEEEETTSCEEEEETTS-
T ss_pred             EEE--EEecCCcEEEEECCCCceEeeec-------------CCCceEEEE-ECCC---CC-EEEEEcCCCcEEEEECCC-
Confidence            554  56678999999999998877765             244678887 9998   55 899999999999999997 


Q ss_pred             CCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe------eeeeeecCCCceece
Q 021291          242 GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF------GIGFVCDQEGNKFGT  304 (314)
Q Consensus       242 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~------~~~~~~~~~~~~~~~  304 (314)
                      .+ ...+..|...|.+++|+|++++|++++.||.|++||+++++.+..      +..+.+++++..+.+
T Consensus       256 ~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  323 (337)
T 1gxr_A          256 PD-KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVT  323 (337)
T ss_dssp             SC-EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEE
T ss_pred             CC-eEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEE
Confidence            43 456788999999999999999999999999999999999887754      344567777766654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=5.2e-33  Score=237.85  Aligned_cols=252  Identities=17%  Similarity=0.237  Sum_probs=196.9

Q ss_pred             CCCceEEecCCCCce-eEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC
Q 021291            7 PPDPVAVLRGHRASV-TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD   85 (314)
Q Consensus         7 ~~~~~~~l~~h~~~v-~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (314)
                      .......+++|...| .++.+  ++++|++|+.||.|++||+.+++.+..+.+|...  |.+++|+|  ++ .|++|+.|
T Consensus       110 ~~~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~--V~~l~~~~--~~-~l~s~s~d  182 (464)
T 3v7d_B          110 FVPQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGG--VWALKYAH--GG-ILVSGSTD  182 (464)
T ss_dssp             CCCEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSC--EEEEEECS--TT-EEEEEETT
T ss_pred             cCcceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcC--EEEEEEcC--CC-EEEEEeCC
Confidence            335677899999885 56666  5679999999999999999999999999999855  99999998  75 99999999


Q ss_pred             CeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeec-cccccccCCCCcceeeccCCcee--------------------
Q 021291           86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKE-PYANAKQANEPKDCYEREVGETV--------------------  144 (314)
Q Consensus        86 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--------------------  144 (314)
                      |+|++||+++++...  .+..+........+..... .........+...+|++......                    
T Consensus       183 g~i~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (464)
T 3v7d_B          183 RTVRVWDIKKGCCTH--VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENP  260 (464)
T ss_dssp             SCEEEEETTTTEEEE--EECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCT
T ss_pred             CCEEEEECCCCcEEE--EECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCe
Confidence            999999999886533  2222333333333332211 23334455567777887655422                    


Q ss_pred             --eecCCCCCC--ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCC
Q 021291          145 --DTDSLCDSK--DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQG  220 (314)
Q Consensus       145 --~~~~~~~~~--~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g  220 (314)
                        .....+|..  .+++++++.++  +|+.|+.|++||+++++.+..+.        +|    ...+.++. |+|+   +
T Consensus       261 ~~~~~~~~~~~~v~~~~~~~~~l~--~~~~d~~i~vwd~~~~~~~~~~~--------~~----~~~v~~~~-~~~~---~  322 (464)
T 3v7d_B          261 YFVGVLRGHMASVRTVSGHGNIVV--SGSYDNTLIVWDVAQMKCLYILS--------GH----TDRIYSTI-YDHE---R  322 (464)
T ss_dssp             TEEEEECCCSSCEEEEEEETTEEE--EEETTSCEEEEETTTTEEEEEEC--------CC----SSCEEEEE-EETT---T
T ss_pred             EEEEEccCccceEEEEcCCCCEEE--EEeCCCeEEEEECCCCcEEEEec--------CC----CCCEEEEE-EcCC---C
Confidence              234455555  66778876544  56779999999999999988887        66    44788887 9998   4


Q ss_pred             ceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291          221 FVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF  289 (314)
Q Consensus       221 ~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~  289 (314)
                      . ++++|+.||.|++||+++ ++++..+.+|...|.+++|++  .+|++++.||.|++||+++++....
T Consensus       323 ~-~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~~--~~l~s~s~dg~v~vwd~~~~~~~~~  387 (464)
T 3v7d_B          323 K-RCISASMDTTIRIWDLEN-GELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKFS  387 (464)
T ss_dssp             T-EEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECS--SEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             C-EEEEEeCCCcEEEEECCC-CcEEEEEeCCCCcEEEEEEcC--CEEEEEeCCCcEEEEECCCCceeee
Confidence            4 899999999999999998 889999999999999999985  5899999999999999999876654

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=6.2e-33  Score=233.11  Aligned_cols=269  Identities=17%  Similarity=0.189  Sum_probs=190.7

Q ss_pred             CCceEEecCCCCceeEEEEcc-CCCEEEEecCCCeEEEEeCCCCeEEEEEe-------------ccCCcccEEEEEEccc
Q 021291            8 PDPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSW-------------VHSAAHGIVSVATGPS   73 (314)
Q Consensus         8 ~~~~~~l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-------------~~~~~~~v~~~~~~~~   73 (314)
                      .+....+++|.+.|++++|+| ++++|++|+.||.|++||+.+++....+.             +|.  ..|.+++|+|.
T Consensus        33 ~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~  110 (408)
T 4a11_B           33 NKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHR--YSVETVQWYPH  110 (408)
T ss_dssp             CTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCS--SCEEEEEECTT
T ss_pred             CcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCC--CcEEEEEEccC
Confidence            466788999999999999999 99999999999999999999875543332             366  55999999984


Q ss_pred             CCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeecc--ccccccCCCCcceeeccCCceeeecCCCC
Q 021291           74 IGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEP--YANAKQANEPKDCYEREVGETVDTDSLCD  151 (314)
Q Consensus        74 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (314)
                       ++.+|++++.||.|++||+.+++...  .+.. ........+.+....  ........+...+|++....... .+..|
T Consensus       111 -~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~-~~~~~  185 (408)
T 4a11_B          111 -DTGMFTSSSFDKTLKVWDTNTLQTAD--VFNF-EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSH-ILQGH  185 (408)
T ss_dssp             -CTTCEEEEETTSEEEEEETTTTEEEE--EEEC-SSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCE-EECCC
T ss_pred             -CCcEEEEEeCCCeEEEeeCCCCccce--eccC-CCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceee-eecCC
Confidence             45689999999999999999876533  2221 122222333332211  23344555677888887665433 34455


Q ss_pred             CC----ceeccCCCceEEEeecCcCeEEEEecCCCc-eeeeeccccc---CCCCCcCCCCCceeeeEEEecCCCCCCceE
Q 021291          152 SK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSC---GGSPNFSSKGRGMCMAVQAYLPSKSQGFVN  223 (314)
Q Consensus       152 ~~----~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~-~~~~~~~~~~---~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~  223 (314)
                      ..    ++|+|+++++++ +++.||.|++||++++. .+..+.....   .............+.++. |+|+   ++ +
T Consensus       186 ~~~v~~~~~~~~~~~ll~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~---~~-~  259 (408)
T 4a11_B          186 RQEILAVSWSPRYDYILA-TASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLC-FTSD---GL-H  259 (408)
T ss_dssp             CSCEEEEEECSSCTTEEE-EEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEE-ECTT---SS-E
T ss_pred             CCcEEEEEECCCCCcEEE-EEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEE-EcCC---CC-E
Confidence            54    899999987665 56679999999998776 3333321000   000000122356788887 9998   55 8


Q ss_pred             EEEeecCCcEEEEEccCC----------------------------------------------CCceEeeecCCcceEE
Q 021291          224 VLAGYEDGSILVWDIRNP----------------------------------------------GIPLTAMKVHLEPVLC  257 (314)
Q Consensus       224 l~~g~~dg~i~vwd~~~~----------------------------------------------~~~~~~~~~h~~~v~~  257 (314)
                      |++++.||.|++||+++.                                              ++++..+.+|...|++
T Consensus       260 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~  339 (408)
T 4a11_B          260 LLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDC  339 (408)
T ss_dssp             EEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEE
T ss_pred             EEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEE
Confidence            999999999999998752                                              2345667789999999


Q ss_pred             EEEeCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291          258 LSIDESCNGGISGGADQKIVLYNLDHSTYVLF  289 (314)
Q Consensus       258 ~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~  289 (314)
                      ++|+|++.+|++++.||.|++||+++++.+..
T Consensus       340 ~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~  371 (408)
T 4a11_B          340 CVFQSNFQELYSGSRDCNILAWVPSLYEPVPD  371 (408)
T ss_dssp             EEEETTTTEEEEEETTSCEEEEEECC------
T ss_pred             EEEcCCCCEEEEECCCCeEEEEeCCCCCccCC
Confidence            99999999999999999999999999877653

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-34  Score=247.35  Aligned_cols=273  Identities=10%  Similarity=0.032  Sum_probs=191.7

Q ss_pred             CCceEEecCCCCceeEEEEccCC---------CEEEE-------------------ecCCCeEEEEeCCCCeE----EEE
Q 021291            8 PDPVAVLRGHRASVTDVCFHQTK---------PILFA-------------------GTTGGELRIWDTVQHRT----VSS   55 (314)
Q Consensus         8 ~~~~~~l~~h~~~v~~~~~~~~~---------~~l~s-------------------~~~dg~v~iwd~~~~~~----~~~   55 (314)
                      .+...++. +.+.|.+++|+|++         ++||+                   ++.|++|+|||+.+++.    ...
T Consensus       124 ~r~~~~~~-~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~  202 (524)
T 2j04_B          124 KRRGFIYN-VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQT  202 (524)
T ss_dssp             CSCEEEEE-CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEE
T ss_pred             CcceEEEE-CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEE
Confidence            34455555 68899999999976         56665                   55789999999987654    234


Q ss_pred             EeccCCcccEEEEEEccc----CCCCeEEEeecCCeEEEEeCCCCCCC-------CCCeeeeec--ceeeEEEeeeeecc
Q 021291           56 SWVHSAAHGIVSVATGPS----IGLNKVISQGRDGTVKCWDIENGGLS-------SNPSLTIKT--NSYHFCKLSLVKEP  122 (314)
Q Consensus        56 ~~~~~~~~~v~~~~~~~~----~~~~~l~s~~~dg~v~iwd~~~~~~~-------~~~~~~~~~--~~~~~~~~~~~~~~  122 (314)
                      +..|..  .|.+++|+|.    .++.+|++++.||+|++||+.++...       .++...+..  .....+.++.  ..
T Consensus       203 l~~~~~--~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~--~~  278 (524)
T 2j04_B          203 IVHSFG--EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS--PT  278 (524)
T ss_dssp             EEECCC--SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS--SS
T ss_pred             EEecCC--cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC--CC
Confidence            556664  4999999992    12579999999999999999876532       122223332  3333444432  22


Q ss_pred             ccccccCCCCcceeeccCCceeeecCCCCCC----c--eeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCC
Q 021291          123 YANAKQANEPKDCYEREVGETVDTDSLCDSK----D--DVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGS  196 (314)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~  196 (314)
                      ........+...+|++.........+.+|..    +  +|++++..+++ +++.|++|+|||+++++++..+.       
T Consensus       279 ~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~la-S~S~D~tvklWD~~~~~~~~~~~-------  350 (524)
T 2j04_B          279 TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVS-TVAVDGYFYIFNPKDIATTKTTV-------  350 (524)
T ss_dssp             EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEE-EEETTSEEEEECGGGHHHHCEEE-------
T ss_pred             eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEE-EeccCCeEEEEECCCCCcccccc-------
Confidence            3445556677888988765444444566766    4  46677645555 67789999999999988777666       


Q ss_pred             CCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcE
Q 021291          197 PNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKI  276 (314)
Q Consensus       197 ~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i  276 (314)
                       +|...  ..+.+++ |+|+   ++ .+++++.|++|++||+++ +.++..+.+|...|++|+|+|++++|++|+.||+|
T Consensus       351 -~~~~~--~~v~~v~-fsp~---~~-~l~s~~~d~tv~lwd~~~-~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv  421 (524)
T 2j04_B          351 -SRFRG--SNLVPVV-YCPQ---IY-SYIYSDGASSLRAVPSRA-AFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSL  421 (524)
T ss_dssp             -EECSC--CSCCCEE-EETT---TT-EEEEECSSSEEEEEETTC-TTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEE
T ss_pred             -ccccc--CcccceE-eCCC---cC-eEEEeCCCCcEEEEECcc-cccceeeecCCCceEEEEeCCCCCeEEEEECCCEE
Confidence             45321  2356777 9998   55 799999999999999998 77778899999999999999999999999999999


Q ss_pred             EEEecCCCeeeE-----------eeeeeeecCCCcee
Q 021291          277 VLYNLDHSTYVL-----------FGIGFVCDQEGNKF  302 (314)
Q Consensus       277 ~iw~~~~~~~~~-----------~~~~~~~~~~~~~~  302 (314)
                      ++||+..+....           .+..++++|++..+
T Consensus       422 ~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~  458 (524)
T 2j04_B          422 IITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKY  458 (524)
T ss_dssp             ECCBSCSSTTTCC------CCCCEEEECBCCSSSCEE
T ss_pred             EEEechHhhccccccCccceeeeEEEEeccCCCCCeE
Confidence            999976431110           12355667777643

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=3.9e-33  Score=230.32  Aligned_cols=261  Identities=11%  Similarity=0.098  Sum_probs=184.3

Q ss_pred             CCCCCCCCCceEEecCCCCceeEEEEccCCC-EEEEecC---CCeEEEEeCCCCeEEEEEe-ccCCcccEEEEEEcccCC
Q 021291            1 MSKRPPPPDPVAVLRGHRASVTDVCFHQTKP-ILFAGTT---GGELRIWDTVQHRTVSSSW-VHSAAHGIVSVATGPSIG   75 (314)
Q Consensus         1 m~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~-~l~s~~~---dg~v~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~   75 (314)
                      |.....|....+.+++|.+.|.+++|+|++. ++++|+.   ||.|+|||+.+++...... .|.  ..|.+++|+|  +
T Consensus         1 m~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~--~~v~~~~~~~--~   76 (357)
T 3i2n_A            1 MSAFEKPQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKA--KPIKCGTFGA--T   76 (357)
T ss_dssp             ----CCCCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEES--SCEEEEECTT--C
T ss_pred             CCccChhHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeeccc--CcEEEEEEcC--C
Confidence            5555566566677889999999999999886 4556766   9999999999887654433 566  4599999999  7


Q ss_pred             ---CCeEEEeecCCeEEEEeCCCCC-CCCCCeeeeecceeeEEEeee--eecc---ccccccCCCCcceeeccCCceeee
Q 021291           76 ---LNKVISQGRDGTVKCWDIENGG-LSSNPSLTIKTNSYHFCKLSL--VKEP---YANAKQANEPKDCYEREVGETVDT  146 (314)
Q Consensus        76 ---~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  146 (314)
                         +.+|++++.||.|++||+.+++ ...  .+..+........+..  ...+   ........+...+|++........
T Consensus        77 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~  154 (357)
T 3i2n_A           77 SLQQRYLATGDFGGNLHIWNLEAPEMPVY--SVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVA  154 (357)
T ss_dssp             CTTTCCEEEEETTSCEEEECTTSCSSCSE--EECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSE
T ss_pred             CCCCceEEEecCCCeEEEEeCCCCCccEE--EEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcce
Confidence               6999999999999999999876 322  2222333333332221  1111   223344456778888877653333


Q ss_pred             cCC---CCCC-----ce----eccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEec
Q 021291          147 DSL---CDSK-----DD----VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYL  214 (314)
Q Consensus       147 ~~~---~~~~-----~~----~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  214 (314)
                      .+.   ++..     ++    |+|++..++  +++.|+.|++||+++++......         |    ...+.++. |+
T Consensus       155 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~--~~~~d~~i~i~d~~~~~~~~~~~---------~----~~~v~~~~-~~  218 (357)
T 3i2n_A          155 NMEPVQGENKRDCWTVAFGNAYNQEERVVC--AGYDNGDIKLFDLRNMALRWETN---------I----KNGVCSLE-FD  218 (357)
T ss_dssp             EECCCTTSCCCCEEEEEEECCCC-CCCEEE--EEETTSEEEEEETTTTEEEEEEE---------C----SSCEEEEE-ES
T ss_pred             eccccCCCCCCceEEEEEEeccCCCCCEEE--EEccCCeEEEEECccCceeeecC---------C----CCceEEEE-cC
Confidence            222   2211     34    678887544  56678999999999988755433         3    44788887 99


Q ss_pred             CCCCCCceEEEEeecCCcEEEEEccCCCCceEeee-----cCCcceEEEEEeCCCC-eEEEecCCCcEEEEecCCCe
Q 021291          215 PSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK-----VHLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHST  285 (314)
Q Consensus       215 p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~-~l~s~s~dg~i~iw~~~~~~  285 (314)
                      |...++. ++++|+.||.|++||+++ ++++..+.     +|...|++++|+|++. +|++++.||.|++||++.+.
T Consensus       219 ~~~~~~~-~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  293 (357)
T 3i2n_A          219 RKDISMN-KLVATSLEGKFHVFDMRT-QHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPI  293 (357)
T ss_dssp             CSSSSCC-EEEEEESTTEEEEEEEEE-EETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCS
T ss_pred             CCCCCCC-EEEEECCCCeEEEEeCcC-CCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCc
Confidence            9321145 899999999999999987 55554444     8999999999999998 89999999999999998653

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=8e-33  Score=227.00  Aligned_cols=250  Identities=19%  Similarity=0.261  Sum_probs=188.6

Q ss_pred             CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v   88 (314)
                      .+.+++++|...|.+++|+|++++|++|+.|+.|++|+............+...  +..+.+++  ++..|++++.|+.+
T Consensus        77 ~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~l~s~s~d~~~  152 (340)
T 4aow_A           77 IPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKD--VLSVAFSS--DNRQIVSGSRDKTI  152 (340)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC--EEEEEECT--TSSCEEEEETTSCE
T ss_pred             eeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCc--eeEEEEee--cCccceeecCCCeE
Confidence            467889999999999999999999999999999999999999888888777744  89999999  88999999999999


Q ss_pred             EEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccc-cccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCce
Q 021291           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY-ANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKY  163 (314)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  163 (314)
                      ++||+........ ....+........+....... ...........+|++....... .+.+|..    ++|+|+++.+
T Consensus       153 ~~~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~-~~~~h~~~v~~~~~s~~~~~l  230 (340)
T 4aow_A          153 KLWNTLGVCKYTV-QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKT-NHIGHTGYLNTVTVSPDGSLC  230 (340)
T ss_dssp             EEECTTSCEEEEE-CSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEE-EECCCSSCEEEEEECTTSSEE
T ss_pred             EEEEeCCCceEEE-EeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceee-EecCCCCcEEEEEECCCCCEE
Confidence            9999876532110 011112223333333332222 2233344567778887765443 4456665    8899998754


Q ss_pred             EEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCC
Q 021291          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI  243 (314)
Q Consensus       164 ~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~  243 (314)
                      +  +|+.|+.|++||+++.+.+..+.        .     ...+.++. |+|+   +  .+++++.|+.|++||++. +.
T Consensus       231 ~--s~s~Dg~i~iwd~~~~~~~~~~~--------~-----~~~v~~~~-~~~~---~--~~~~~~~d~~i~iwd~~~-~~  288 (340)
T 4aow_A          231 A--SGGKDGQAMLWDLNEGKHLYTLD--------G-----GDIINALC-FSPN---R--YWLCAATGPSIKIWDLEG-KI  288 (340)
T ss_dssp             E--EEETTCEEEEEETTTTEEEEEEE--------C-----SSCEEEEE-ECSS---S--SEEEEEETTEEEEEETTT-TE
T ss_pred             E--EEeCCCeEEEEEeccCceeeeec--------C-----CceEEeee-cCCC---C--ceeeccCCCEEEEEECCC-Ce
Confidence            3  67779999999999999888877        2     23577776 9987   3  466777899999999986 54


Q ss_pred             ceEee---------ecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCee
Q 021291          244 PLTAM---------KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTY  286 (314)
Q Consensus       244 ~~~~~---------~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~  286 (314)
                      .+..+         .+|...|++++|+|++++|++|+.||.|+|||+++|++
T Consensus       289 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGtr  340 (340)
T 4aow_A          289 IVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR  340 (340)
T ss_dssp             EEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC---
T ss_pred             EEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcCC
Confidence            44433         46888999999999999999999999999999998863

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-33  Score=237.34  Aligned_cols=249  Identities=14%  Similarity=0.177  Sum_probs=193.3

Q ss_pred             CCCCceeEEEEccCCCEEEEecCCCeEEEEeCCC----CeEEEEEeccCCcccEEEEEEcccCC-CCeEEEeecCCeEEE
Q 021291           16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ----HRTVSSSWVHSAAHGIVSVATGPSIG-LNKVISQGRDGTVKC   90 (314)
Q Consensus        16 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~v~i   90 (314)
                      .|...|++++|+|++++|++|+.||.|++||+.+    .+.+..+..|...  |.+++|+|  + +++|++++.|+.|++
T Consensus        65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~--~~~~~l~s~~~dg~v~i  140 (416)
T 2pm9_A           65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSS--VKTVKFNA--KQDNVLASGGNNGEIFI  140 (416)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSC--CCEEEECS--SSTTBEEEECSSSCEEB
T ss_pred             ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccc--eEEEEEcC--CCCCEEEEEcCCCeEEE
Confidence            5889999999999999999999999999999987    4578888888854  99999999  7 889999999999999


Q ss_pred             EeCCCCC------CCCCC-eeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCC-----CCC----c
Q 021291           91 WDIENGG------LSSNP-SLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLC-----DSK----D  154 (314)
Q Consensus        91 wd~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~----~  154 (314)
                      ||+++++      ..... ....+........+++............+...+|++............     |..    +
T Consensus       141 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~  220 (416)
T 2pm9_A          141 WDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVV  220 (416)
T ss_dssp             CBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEE
T ss_pred             EECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEE
Confidence            9999876      21100 111223344444454443344445556677888998877654433322     123    8


Q ss_pred             eeccCCCceEEEeecCcC---eEEEEecCCC-ceeeeecccccCCCCCcCCCCCceeeeEEEecC-CCCCCceEEEEeec
Q 021291          155 DVPAEGPKYMAVAGEQLS---EVEIWDLNTA-ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLP-SKSQGFVNVLAGYE  229 (314)
Q Consensus       155 ~~~~~~~~~~~~~g~~d~---~i~vwd~~~~-~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p-~~~~g~~~l~~g~~  229 (314)
                      +|+|++..+++ +++.|+   .|++||++++ .....+..       +|    ...+.++. |+| +   +. +|++++.
T Consensus       221 ~~~~~~~~~l~-~~~~d~~~~~i~~~d~~~~~~~~~~~~~-------~~----~~~v~~~~-~s~~~---~~-~l~s~~~  283 (416)
T 2pm9_A          221 EWHPKNSTRVA-TATGSDNDPSILIWDLRNANTPLQTLNQ-------GH----QKGILSLD-WCHQD---EH-LLLSSGR  283 (416)
T ss_dssp             EECSSCTTEEE-EEECCSSSCCCCEEETTSTTSCSBCCCS-------CC----SSCEEEEE-ECSSC---SS-CEEEEES
T ss_pred             EECCCCCCEEE-EEECCCCCceEEEEeCCCCCCCcEEeec-------Cc----cCceeEEE-eCCCC---CC-eEEEEeC
Confidence            99999876666 456677   9999999986 34433331       23    45788887 999 5   44 8999999


Q ss_pred             CCcEEEEEccCCCCceEeeecCCcceEEEEEeCCC-CeEEEecCCCcEEEEecCCCee
Q 021291          230 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESC-NGGISGGADQKIVLYNLDHSTY  286 (314)
Q Consensus       230 dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~i~iw~~~~~~~  286 (314)
                      ||.|++||+++ ++++..+.+|...|++++|+|++ .+|++++.||.|++|++...+.
T Consensus       284 dg~v~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~  340 (416)
T 2pm9_A          284 DNTVLLWNPES-AEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTN  340 (416)
T ss_dssp             SSEEEEECSSS-CCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCC
T ss_pred             CCCEEEeeCCC-CccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCC
Confidence            99999999998 88999999999999999999998 8999999999999999987763

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=4.6e-33  Score=232.39  Aligned_cols=266  Identities=12%  Similarity=0.104  Sum_probs=196.4

Q ss_pred             CCCceEEecCCCCceeEEEEccCC-CEEEEecCCCeEEEEeCCCCeEEEEEe--ccCCcccEEEEEEcccCCCCeEEEee
Q 021291            7 PPDPVAVLRGHRASVTDVCFHQTK-PILFAGTTGGELRIWDTVQHRTVSSSW--VHSAAHGIVSVATGPSIGLNKVISQG   83 (314)
Q Consensus         7 ~~~~~~~l~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (314)
                      +.+..+.+.+|.+.|++++|+|++ ++|++|+.||.|+|||+.+++....+.  +|.  ..|.+++|+|. ++++|++++
T Consensus        62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~--~~v~~~~~~~~-~~~~l~s~~  138 (383)
T 3ei3_B           62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPG--DAITGMKFNQF-NTNQLFVSS  138 (383)
T ss_dssp             TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTT--CBEEEEEEETT-EEEEEEEEE
T ss_pred             ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcC--CceeEEEeCCC-CCCEEEEEe
Confidence            446788999999999999999998 999999999999999999888877776  466  55999999993 358999999


Q ss_pred             cCCeEEEEeCCCCCCCCCCeeeeec-----ceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----c
Q 021291           84 RDGTVKCWDIENGGLSSNPSLTIKT-----NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----D  154 (314)
Q Consensus        84 ~dg~v~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~  154 (314)
                      .|+.|++||+++...     ..+..     .......+++... ........+...+|++..  .....+.+|..    +
T Consensus       139 ~d~~i~iwd~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~--~~~~~~~~h~~~v~~~  210 (383)
T 3ei3_B          139 IRGATTLRDFSGSVI-----QVFAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGLDG--HEIFKEKLHKAKVTHA  210 (383)
T ss_dssp             TTTEEEEEETTSCEE-----EEEECCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEETTS--CEEEEEECSSSCEEEE
T ss_pred             CCCEEEEEECCCCce-----EEEeccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEECCC--CEEEEeccCCCcEEEE
Confidence            999999999986432     12221     2233344443322 223334446677777742  23334445555    8


Q ss_pred             eeccCCCceEEEeecCcCeEEEEecCC----CceeeeecccccCCCCCcCCCCCceeeeEEEecC-CCCCCceEEEEeec
Q 021291          155 DVPAEGPKYMAVAGEQLSEVEIWDLNT----AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLP-SKSQGFVNVLAGYE  229 (314)
Q Consensus       155 ~~~~~~~~~~~~~g~~d~~i~vwd~~~----~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p-~~~~g~~~l~~g~~  229 (314)
                      +|+|+++.+++ +++.|+.|++||+++    +..+..+.         |    ...+.++. |+| +   +. +|++++.
T Consensus       211 ~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~---------~----~~~v~~~~-~s~~~---~~-~l~~~~~  271 (383)
T 3ei3_B          211 EFNPRCDWLMA-TSSVDATVKLWDLRNIKDKNSYIAEMP---------H----EKPVNAAY-FNPTD---ST-KLLTTDQ  271 (383)
T ss_dssp             EECSSCTTEEE-EEETTSEEEEEEGGGCCSTTCEEEEEE---------C----SSCEEEEE-ECTTT---SC-EEEEEES
T ss_pred             EECCCCCCEEE-EEeCCCEEEEEeCCCCCcccceEEEec---------C----CCceEEEE-EcCCC---CC-EEEEEcC
Confidence            99999986665 566799999999997    44444443         3    55788888 999 7   44 8999999


Q ss_pred             CCcEEEEEccCCCCceEeeecCC-----------------cceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEeeee
Q 021291          230 DGSILVWDIRNPGIPLTAMKVHL-----------------EPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFGIG  292 (314)
Q Consensus       230 dg~i~vwd~~~~~~~~~~~~~h~-----------------~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~  292 (314)
                      |+.|++||+++ +.....+.+|.                 ..+..++|+|++++  +++.||.|++||+.+++.+..+.+
T Consensus       272 d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~  348 (383)
T 3ei3_B          272 RNEIRVYSSYD-WSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRD  348 (383)
T ss_dssp             SSEEEEEETTB-TTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECB
T ss_pred             CCcEEEEECCC-CccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecC
Confidence            99999999998 66666666553                 34555777888876  889999999999999988766432


Q ss_pred             ---------eeecCCCceecee
Q 021291          293 ---------FVCDQEGNKFGTT  305 (314)
Q Consensus       293 ---------~~~~~~~~~~~~~  305 (314)
                               ++++|++..+++.
T Consensus       349 ~~~~~~~~~~~~s~~g~~l~s~  370 (383)
T 3ei3_B          349 PNAAGIISLNKFSPTGDVLASG  370 (383)
T ss_dssp             TTBCSCCCEEEECTTSSEEEEE
T ss_pred             CCCCceEEEEEEecCccEEEEe
Confidence                     2577777776553

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=6.3e-33  Score=243.55  Aligned_cols=240  Identities=18%  Similarity=0.292  Sum_probs=187.3

Q ss_pred             CCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCe
Q 021291            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (314)
Q Consensus         8 ~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (314)
                      .+.+..+.+|...|.+++|+|++++|++|+.||.|++||. +++.+..+..|...  |.+++|+|  ++++|++++.|+.
T Consensus       334 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~--v~~~~~s~--dg~~l~~~~~d~~  408 (577)
T 2ymu_A          334 GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSS--VRGVAFSP--DGQTIASASDDKT  408 (577)
T ss_dssp             SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSC--EEEEEECT--TSSCEEEEETTSE
T ss_pred             CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCC--eEEEEECC--CCCEEEEEeCCCE
Confidence            4567788999999999999999999999999999999995 57888889999855  99999999  9999999999999


Q ss_pred             EEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCce
Q 021291           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKY  163 (314)
Q Consensus        88 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  163 (314)
                      |++||... +...  .+..+........+++.... .......+...+|+...  .....+.+|..    ++|+|+++.+
T Consensus       409 v~~~~~~~-~~~~--~~~~~~~~v~~~~~s~d~~~-l~~~~~d~~v~~w~~~~--~~~~~~~~~~~~v~~~~~spd~~~l  482 (577)
T 2ymu_A          409 VKLWNRNG-QLLQ--TLTGHSSSVWGVAFSPDDQT-IASASDDKTVKLWNRNG--QLLQTLTGHSSSVRGVAFSPDGQTI  482 (577)
T ss_dssp             EEEECTTC-CEEE--EEECCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTS--CEEEEEECCSSCEEEEEECTTSCEE
T ss_pred             EEEEeCCC-CEEE--EecCCCCCeEEEEECCCCCE-EEEEcCCCEEEEEECCC--CEEEEEcCCCCCEEEEEEcCCCCEE
Confidence            99999643 3222  22223333333344433222 12223334556666533  23334455555    8999999754


Q ss_pred             EEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCC
Q 021291          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI  243 (314)
Q Consensus       164 ~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~  243 (314)
                      +  +++.|+.|++||. +++.+..+.        +|    ...+.+++ |+|+   |+ +|++++.||.|++||..  ++
T Consensus       483 a--s~~~d~~i~iw~~-~~~~~~~~~--------~h----~~~v~~l~-~s~d---g~-~l~s~~~dg~v~lwd~~--~~  540 (577)
T 2ymu_A          483 A--SASDDKTVKLWNR-NGQLLQTLT--------GH----SSSVRGVA-FSPD---GQ-TIASASDDKTVKLWNRN--GQ  540 (577)
T ss_dssp             E--EEETTSEEEEEET-TSCEEEEEE--------CC----SSCEEEEE-ECTT---SS-CEEEEETTSEEEEECTT--SC
T ss_pred             E--EEeCCCEEEEEcC-CCCEEEEEe--------CC----CCCEEEEE-EcCC---CC-EEEEEECcCEEEEEeCC--CC
Confidence            3  5667999999995 677888887        67    44688887 9998   55 89999999999999964  78


Q ss_pred             ceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEe
Q 021291          244 PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN  280 (314)
Q Consensus       244 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~  280 (314)
                      ++..+.+|.+.|++++|+|++++|+|++.|+.|++||
T Consensus       541 ~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          541 LLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            8999999999999999999999999999999999997

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.5e-32  Score=229.36  Aligned_cols=253  Identities=12%  Similarity=0.144  Sum_probs=191.1

Q ss_pred             CCceEEecC-CCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC
Q 021291            8 PDPVAVLRG-HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (314)
Q Consensus         8 ~~~~~~l~~-h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg   86 (314)
                      ++....+.. |...|.+++|+|++++|++|+.||.|++||+.+++.+..+..|...  |.+++|++    +.|++++.||
T Consensus       123 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--v~~~~~~~----~~l~~~~~dg  196 (401)
T 4aez_A          123 GSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQAR--VGCLSWNR----HVLSSGSRSG  196 (401)
T ss_dssp             CCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC--EEEEEEET----TEEEEEETTS
T ss_pred             CcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCc--eEEEEECC----CEEEEEcCCC
Confidence            455555555 8999999999999999999999999999999999999999988854  99999965    7999999999


Q ss_pred             eEEEEeCCCCCCCCCCeeeee--cceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCC
Q 021291           87 TVKCWDIENGGLSSNPSLTIK--TNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEG  160 (314)
Q Consensus        87 ~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  160 (314)
                      .|++||++.....   ...+.  ........+++.. .........+...+|++........ +..|..    ++|+|++
T Consensus       197 ~i~i~d~~~~~~~---~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~-~~~~~~~v~~~~~~p~~  271 (401)
T 4aez_A          197 AIHHHDVRIANHQ---IGTLQGHSSEVCGLAWRSDG-LQLASGGNDNVVQIWDARSSIPKFT-KTNHNAAVKAVAWCPWQ  271 (401)
T ss_dssp             EEEEEETTSSSCE---EEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCSSEEEE-ECCCSSCCCEEEECTTS
T ss_pred             CEEEEecccCcce---eeEEcCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEccCCCCCccEE-ecCCcceEEEEEECCCC
Confidence            9999999854321   22333  3333333444322 2233344456788888887655443 333433    9999999


Q ss_pred             CceEEEe-ecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEE--eecCCcEEEEE
Q 021291          161 PKYMAVA-GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA--GYEDGSILVWD  237 (314)
Q Consensus       161 ~~~~~~~-g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~--g~~dg~i~vwd  237 (314)
                      ..+++++ |+.|+.|++||+++++.+..+..             ...+.++. |+|+   ++ ++++  |+.||.|++||
T Consensus       272 ~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~-------------~~~v~~~~-~s~~---~~-~l~~~~g~~dg~i~v~~  333 (401)
T 4aez_A          272 SNLLATGGGTMDKQIHFWNAATGARVNTVDA-------------GSQVTSLI-WSPH---SK-EIMSTHGFPDNNLSIWS  333 (401)
T ss_dssp             TTEEEEECCTTTCEEEEEETTTCCEEEEEEC-------------SSCEEEEE-ECSS---SS-EEEEEECTTTCEEEEEE
T ss_pred             CCEEEEecCCCCCEEEEEECCCCCEEEEEeC-------------CCcEEEEE-ECCC---CC-eEEEEeecCCCcEEEEe
Confidence            8887754 34799999999999998888762             34688887 9998   54 6776  55899999999


Q ss_pred             ccCCCCce--EeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEee
Q 021291          238 IRNPGIPL--TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFG  290 (314)
Q Consensus       238 ~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~  290 (314)
                      +.+ +...  ..+.+|...|.+++|+|++.+|++++.||.|++|++.+++.+...
T Consensus       334 ~~~-~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~  387 (401)
T 4aez_A          334 YSS-SGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP  387 (401)
T ss_dssp             EET-TEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred             cCC-ccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence            997 4433  346799999999999999999999999999999999999877654

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=3.7e-32  Score=238.65  Aligned_cols=265  Identities=17%  Similarity=0.262  Sum_probs=200.7

Q ss_pred             CCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC
Q 021291            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (314)
Q Consensus         7 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg   86 (314)
                      .++.+..+.+|...|.+++|+|++++|++++.||.|++||.. ++.+..+..|...  |.+++|+|  ++++|++++.|+
T Consensus       292 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~--v~~~~~s~--~g~~l~~~~~dg  366 (577)
T 2ymu_A          292 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSS--VWGVAFSP--DGQTIASASDDK  366 (577)
T ss_dssp             TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSC--EEEEEECT--TSSEEEEEETTS
T ss_pred             CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCC--EEEEEECC--CCCEEEEEeCCC
Confidence            457788899999999999999999999999999999999976 4566778888744  99999999  999999999999


Q ss_pred             eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCc
Q 021291           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPK  162 (314)
Q Consensus        87 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  162 (314)
                      .|++||... +...  .+..+........+++.+... ..........+|+...  .....+.+|..    ++|+|+++.
T Consensus       367 ~v~~~~~~~-~~~~--~~~~~~~~v~~~~~s~dg~~l-~~~~~d~~v~~~~~~~--~~~~~~~~~~~~v~~~~~s~d~~~  440 (577)
T 2ymu_A          367 TVKLWNRNG-QLLQ--TLTGHSSSVRGVAFSPDGQTI-ASASDDKTVKLWNRNG--QLLQTLTGHSSSVWGVAFSPDDQT  440 (577)
T ss_dssp             EEEEEETTC-CEEE--EEECCSSCEEEEEECTTSSCE-EEEETTSEEEEECTTC--CEEEEEECCSSCEEEEEECTTSSE
T ss_pred             EEEEEcCCC-CEEE--EecCCCCCeEEEEECCCCCEE-EEEeCCCEEEEEeCCC--CEEEEecCCCCCeEEEEECCCCCE
Confidence            999999643 3222  222233333444444333222 1222334455565432  23334455655    889999875


Q ss_pred             eEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCC
Q 021291          163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG  242 (314)
Q Consensus       163 ~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~  242 (314)
                      ++  +++.|+.|++||. +++.+..+.        +|    ...+.+++ |+|+   ++ +|++++.|+.|++||..  +
T Consensus       441 l~--~~~~d~~v~~w~~-~~~~~~~~~--------~~----~~~v~~~~-~spd---~~-~las~~~d~~i~iw~~~--~  498 (577)
T 2ymu_A          441 IA--SASDDKTVKLWNR-NGQLLQTLT--------GH----SSSVRGVA-FSPD---GQ-TIASASDDKTVKLWNRN--G  498 (577)
T ss_dssp             EE--EEETTSEEEEEET-TSCEEEEEE--------CC----SSCEEEEE-ECTT---SC-EEEEEETTSEEEEEETT--S
T ss_pred             EE--EEcCCCEEEEEEC-CCCEEEEEc--------CC----CCCEEEEE-EcCC---CC-EEEEEeCCCEEEEEcCC--C
Confidence            44  5667999999996 566677776        56    44678887 9998   55 89999999999999964  7


Q ss_pred             CceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEee-------eeeeecCCCceecee
Q 021291          243 IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFG-------IGFVCDQEGNKFGTT  305 (314)
Q Consensus       243 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~-------~~~~~~~~~~~~~~~  305 (314)
                      +++..+.+|...|++++|+|++++|++++.||.|++||.. ++.+...       ..++++|+|..+.+.
T Consensus       499 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~-~~~~~~~~~h~~~v~~~~fs~dg~~l~s~  567 (577)
T 2ymu_A          499 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASA  567 (577)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-SCEEEEEECCSSCEEEEEECTTSSCEEEE
T ss_pred             CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC-CCEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence            8899999999999999999999999999999999999964 5555543       445678888877653

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.9e-32  Score=245.42  Aligned_cols=248  Identities=19%  Similarity=0.257  Sum_probs=187.4

Q ss_pred             CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v   88 (314)
                      ...+.+.+|...|.+++|+|++++|++|+.||+|+|||+.+++.+..+.+|...  |.+++|+|  ++++|++++.|++|
T Consensus       421 ~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~--v~~~~~s~--~~~~l~s~s~D~~i  496 (694)
T 3dm0_A          421 VAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKD--VLSVAFSL--DNRQIVSASRDRTI  496 (694)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC--EEEEEECT--TSSCEEEEETTSCE
T ss_pred             cccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCC--EEEEEEeC--CCCEEEEEeCCCEE
Confidence            456789999999999999999999999999999999999999999999999855  99999999  99999999999999


Q ss_pred             EEEeCCCCCCCCC-CeeeeecceeeEEEeeeeec-cccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCc
Q 021291           89 KCWDIENGGLSSN-PSLTIKTNSYHFCKLSLVKE-PYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPK  162 (314)
Q Consensus        89 ~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  162 (314)
                      ++||+........ .....+........+++... .........+...+|++...... ..+.+|..    ++|+|+++.
T Consensus       497 ~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~-~~~~~h~~~v~~v~~spdg~~  575 (694)
T 3dm0_A          497 KLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR-STLAGHTGYVSTVAVSPDGSL  575 (694)
T ss_dssp             EEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEE-EEECCCSSCEEEEEECTTSSE
T ss_pred             EEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEE-EEEcCCCCCEEEEEEeCCCCE
Confidence            9999865421100 00011222233444444332 22344555677888888776543 34566766    899999874


Q ss_pred             eEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCC
Q 021291          163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG  242 (314)
Q Consensus       163 ~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~  242 (314)
                      ++  +|+.|+.|++||+++++.+..+.        .     ...+.++. |+|+   +. +++++ .++.|++||+++ +
T Consensus       576 l~--sg~~Dg~i~iwd~~~~~~~~~~~--------~-----~~~v~~~~-~sp~---~~-~l~~~-~~~~i~iwd~~~-~  633 (694)
T 3dm0_A          576 CA--SGGKDGVVLLWDLAEGKKLYSLE--------A-----NSVIHALC-FSPN---RY-WLCAA-TEHGIKIWDLES-K  633 (694)
T ss_dssp             EE--EEETTSBCEEEETTTTEEEECCB--------C-----SSCEEEEE-ECSS---SS-EEEEE-ETTEEEEEETTT-T
T ss_pred             EE--EEeCCCeEEEEECCCCceEEEec--------C-----CCcEEEEE-EcCC---Cc-EEEEE-cCCCEEEEECCC-C
Confidence            43  67779999999999998887765        2     33577887 9998   44 55555 567799999997 6


Q ss_pred             CceEeeecCC-------------------cceEEEEEeCCCCeEEEecCCCcEEEEecCC
Q 021291          243 IPLTAMKVHL-------------------EPVLCLSIDESCNGGISGGADQKIVLYNLDH  283 (314)
Q Consensus       243 ~~~~~~~~h~-------------------~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~  283 (314)
                      ..+..+..+.                   ..+++++|+|++++|++|+.||.|++|++..
T Consensus       634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~  693 (694)
T 3dm0_A          634 SIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR  693 (694)
T ss_dssp             EEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             CChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence            6666554321                   2378999999999999999999999999863

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.5e-33  Score=234.91  Aligned_cols=260  Identities=13%  Similarity=0.132  Sum_probs=194.6

Q ss_pred             CceEEecCCCCceeEEEEccC----C---CEEEEecCCCeEEEEeCCCCeE-----EEEEeccCCc---ccEEEEEEc--
Q 021291            9 DPVAVLRGHRASVTDVCFHQT----K---PILFAGTTGGELRIWDTVQHRT-----VSSSWVHSAA---HGIVSVATG--   71 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~----~---~~l~s~~~dg~v~iwd~~~~~~-----~~~~~~~~~~---~~v~~~~~~--   71 (314)
                      +++..+.+|...|.+++|+|+    +   ++|++++.||.|++||+.+++.     +..+..|...   ..|.+++|+  
T Consensus        53 ~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  132 (397)
T 1sq9_A           53 DKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGAS  132 (397)
T ss_dssp             GGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECC
T ss_pred             CcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeec
Confidence            478899999999999999999    9   9999999999999999998876     7888887311   459999999  


Q ss_pred             --ccCCCCe-EEEeecCCeEEEEeCCC------CCCCC-CCeeee---------ecceeeEEEeeeeeccccccccCCCC
Q 021291           72 --PSIGLNK-VISQGRDGTVKCWDIEN------GGLSS-NPSLTI---------KTNSYHFCKLSLVKEPYANAKQANEP  132 (314)
Q Consensus        72 --~~~~~~~-l~s~~~dg~v~iwd~~~------~~~~~-~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (314)
                        |  +++. |++++.||.|++||+++      ++... .+...+         +........+++..  ........+.
T Consensus       133 ~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~  208 (397)
T 1sq9_A          133 NDR--LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGT  208 (397)
T ss_dssp             C------CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSE
T ss_pred             cCC--CCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCc
Confidence              8  8899 99999999999999998      54432 111122         22233344444433  3334445566


Q ss_pred             cceeeccCCceeeecCCC---C---CC----ceeccCCCceEEEeecCc---CeEEEEecCCCceeeeecccccC-----
Q 021291          133 KDCYEREVGETVDTDSLC---D---SK----DDVPAEGPKYMAVAGEQL---SEVEIWDLNTAERCTRLHQNSCG-----  194 (314)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~---~---~~----~~~~~~~~~~~~~~g~~d---~~i~vwd~~~~~~~~~~~~~~~~-----  194 (314)
                      ..+|++........ +..   |   ..    ++|+|+++.++  +++.|   +.|++||+++++.+..+......     
T Consensus       209 i~i~d~~~~~~~~~-~~~~~~h~~~~~~i~~i~~~~~~~~l~--~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~  285 (397)
T 1sq9_A          209 VQISELSTLRPLYN-FESQHSMINNSNSIRSVKFSPQGSLLA--IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASL  285 (397)
T ss_dssp             EEEEETTTTEEEEE-EECCC---CCCCCEEEEEECSSTTEEE--EEEEETTEEEEEEEETTTCCEEEEECBC--------
T ss_pred             EEEEECCCCceeEE-EeccccccccCCccceEEECCCCCEEE--EEecCCCCceEEEEECCCCcccceeccCcccccccc
Confidence            77888877654433 333   4   33    89999987544  56668   99999999999988887720000     


Q ss_pred             CCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeee------cC---------------Cc
Q 021291          195 GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK------VH---------------LE  253 (314)
Q Consensus       195 ~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~------~h---------------~~  253 (314)
                      ....|    ...+.++. |+|+   ++ +|++++.||.|++||+++ ++++..+.      +|               ..
T Consensus       286 ~~~~~----~~~v~~~~-~~~~---~~-~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  355 (397)
T 1sq9_A          286 GEFAH----SSWVMSLS-FNDS---GE-TLCSAGWDGKLRFWDVKT-KERITTLNMHCDDIEIEEDILAVDEHGDSLAEP  355 (397)
T ss_dssp             CCBSB----SSCEEEEE-ECSS---SS-EEEEEETTSEEEEEETTT-TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred             ccccc----CCcEEEEE-ECCC---CC-EEEEEeCCCeEEEEEcCC-CceeEEEecccCcccchhhhhccccccccccCC
Confidence            00004    45788887 9998   55 899999999999999998 88889998      88               99


Q ss_pred             ceEEEEEeCCC----------CeEEEecCCCcEEEEecCCCe
Q 021291          254 PVLCLSIDESC----------NGGISGGADQKIVLYNLDHST  285 (314)
Q Consensus       254 ~v~~~~~~~~~----------~~l~s~s~dg~i~iw~~~~~~  285 (314)
                      +|++++|+|++          .+|++++.||.|++|++++++
T Consensus       356 ~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          356 GVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             CEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             ceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence            99999999998          799999999999999998764

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.5e-33  Score=239.91  Aligned_cols=253  Identities=14%  Similarity=0.170  Sum_probs=184.3

Q ss_pred             CCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCe-----------EEEEEeccCCc----------ccEEEEEEcccCC
Q 021291           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-----------TVSSSWVHSAA----------HGIVSVATGPSIG   75 (314)
Q Consensus        17 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-----------~~~~~~~~~~~----------~~v~~~~~~~~~~   75 (314)
                      |.+.|++++|+|+|++||+|+.||.|+|||+.+++           ....+.+|...          ..|.+++|+|  +
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~--~  104 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP--Q  104 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC--C
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC--C
Confidence            67899999999999999999999999999998776           57788888722          3499999999  7


Q ss_pred             C--CeEEEeecCCeEEEEeCCCCCCCC----------------------CCe----------------eeeecceeeEEE
Q 021291           76 L--NKVISQGRDGTVKCWDIENGGLSS----------------------NPS----------------LTIKTNSYHFCK  115 (314)
Q Consensus        76 ~--~~l~s~~~dg~v~iwd~~~~~~~~----------------------~~~----------------~~~~~~~~~~~~  115 (314)
                      +  ..|++++.|++|++||+.++....                      .+.                ...+........
T Consensus       105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  184 (447)
T 3dw8_B          105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS  184 (447)
T ss_dssp             CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred             CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence            6  789999999999999987633210                      000                011222333344


Q ss_pred             eeeeeccccccccCCCCcceeeccCCceeee-------cCCCCCC----ceeccCCCceEEEeecCcCeEEEEecCCCce
Q 021291          116 LSLVKEPYANAKQANEPKDCYEREVGETVDT-------DSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAER  184 (314)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~  184 (314)
                      +++....... . ..+...+|++........       .+.+|..    ++|+|++..+++ +|+.|+.|++||+++++.
T Consensus       185 ~~~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-s~~~dg~i~iwd~~~~~~  261 (447)
T 3dw8_B          185 INSDYETYLS-A-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFV-YSSSKGTIRLCDMRASAL  261 (447)
T ss_dssp             ECTTSSEEEE-E-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEE-EEETTSCEEEEETTTCSS
T ss_pred             EcCCCCEEEE-e-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEE-EEeCCCeEEEEECcCCcc
Confidence            4443322222 2 466777888874332222       2445655    899999845555 567799999999998886


Q ss_pred             ----eeeecccccCCCCCcCCC--------CCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCC
Q 021291          185 ----CTRLHQNSCGGSPNFSSK--------GRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL  252 (314)
Q Consensus       185 ----~~~~~~~~~~~~~~h~~~--------~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~  252 (314)
                          ...+.        +|...        ....+.++. |+|+   |+ +|++++. +.|++||+++.++++..+.+|.
T Consensus       262 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~v~~~~-~s~~---g~-~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~  327 (447)
T 3dw8_B          262 CDRHSKLFE--------EPEDPSNRSFFSEIISSISDVK-FSHS---GR-YMMTRDY-LSVKVWDLNMENRPVETYQVHE  327 (447)
T ss_dssp             SCTTCEEEC--------CC-----CCHHHHHTTCEEEEE-ECTT---SS-EEEEEES-SEEEEEETTCCSSCSCCEESCG
T ss_pred             ccceeeEec--------cCCCccccccccccCceEEEEE-ECCC---CC-EEEEeeC-CeEEEEeCCCCccccceeeccc
Confidence                56666        44210        012688887 9998   55 8889988 9999999997678888898886


Q ss_pred             cc---------------eEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeE
Q 021291          253 EP---------------VLCLSIDESCNGGISGGADQKIVLYNLDHSTYVL  288 (314)
Q Consensus       253 ~~---------------v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~  288 (314)
                      ..               +..++|+|++.+|++|+.||.|++||+.+++.+.
T Consensus       328 ~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~  378 (447)
T 3dw8_B          328 YLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT  378 (447)
T ss_dssp             GGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE
T ss_pred             cccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee
Confidence            42               3349999999999999999999999999887654

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.6e-34  Score=238.55  Aligned_cols=230  Identities=11%  Similarity=0.136  Sum_probs=169.5

Q ss_pred             EecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCC--eEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEE
Q 021291           13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH--RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC   90 (314)
Q Consensus        13 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~i   90 (314)
                      .++.|.++|++++|+|++++|++|+.||.|+|||+.++  +.+..+.+|...  |.+++|+|  ++++|++++.|++|++
T Consensus         6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~--v~~~~~s~--~~~~l~s~s~d~~v~v   81 (377)
T 3dwl_C            6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKI--VTCVDWAP--KSNRIVTCSQDRNAYV   81 (377)
T ss_dssp             EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSC--EEEEEECT--TTCCEEEEETTSSEEE
T ss_pred             eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCce--EEEEEEeC--CCCEEEEEeCCCeEEE
Confidence            45557889999999999999999999999999999988  677788888844  99999999  9999999999999999


Q ss_pred             EeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecC
Q 021291           91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ  170 (314)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  170 (314)
                      ||+.+++... +...+..+......                                      ++|+|+++.++  +++.
T Consensus        82 wd~~~~~~~~-~~~~~~~~~~~v~~--------------------------------------~~~~~~~~~l~--~~~~  120 (377)
T 3dwl_C           82 YEKRPDGTWK-QTLVLLRLNRAATF--------------------------------------VRWSPNEDKFA--VGSG  120 (377)
T ss_dssp             C------CCC-CEEECCCCSSCEEE--------------------------------------EECCTTSSCCE--EEES
T ss_pred             EEcCCCCcee-eeeEecccCCceEE--------------------------------------EEECCCCCEEE--EEec
Confidence            9999876111 12222211111110                                      56889887655  5667


Q ss_pred             cCeEEEEecCCCce---eeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCC------
Q 021291          171 LSEVEIWDLNTAER---CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP------  241 (314)
Q Consensus       171 d~~i~vwd~~~~~~---~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~------  241 (314)
                      |+.|++||+++++.   ...+..       .|    ...+.++. |+|+   ++ +|++++.|+.|++||++..      
T Consensus       121 d~~i~iwd~~~~~~~~~~~~~~~-------~h----~~~v~~~~-~~~~---~~-~l~~~~~d~~i~iwd~~~~~~~~~~  184 (377)
T 3dwl_C          121 ARVISVCYFEQENDWWVSKHLKR-------PL----RSTILSLD-WHPN---NV-LLAAGCADRKAYVLSAYVRDVDAKP  184 (377)
T ss_dssp             SSCEEECCC-----CCCCEEECS-------SC----CSCEEEEE-ECTT---SS-EEEEEESSSCEEEEEECCSSCC-CC
T ss_pred             CCeEEEEEECCcccceeeeEeec-------cc----CCCeEEEE-EcCC---CC-EEEEEeCCCEEEEEEEEecccCCCc
Confidence            99999999998773   555551       15    55788888 9998   44 8999999999999998521      


Q ss_pred             -----------CCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCee----eEe-------eeeeeecCCC
Q 021291          242 -----------GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTY----VLF-------GIGFVCDQEG  299 (314)
Q Consensus       242 -----------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~----~~~-------~~~~~~~~~~  299 (314)
                                 ++++..+ +|...|++++|+|++++|++++.||.|++||+.+++.    +..       +..++++|++
T Consensus       185 ~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  263 (377)
T 3dwl_C          185 EASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANES  263 (377)
T ss_dssp             CSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETT
T ss_pred             cccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCC
Confidence                       3455556 8999999999999999999999999999999998876    332       3445566777


Q ss_pred             ceece
Q 021291          300 NKFGT  304 (314)
Q Consensus       300 ~~~~~  304 (314)
                      ..+++
T Consensus       264 ~~l~~  268 (377)
T 3dwl_C          264 AIVAA  268 (377)
T ss_dssp             EEEEE
T ss_pred             CEEEE
Confidence            66554

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=8.4e-33  Score=229.64  Aligned_cols=243  Identities=13%  Similarity=0.117  Sum_probs=190.2

Q ss_pred             EecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCe--EEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEE
Q 021291           13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC   90 (314)
Q Consensus        13 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~i   90 (314)
                      .+..|.++|++++|+|++++|++|+.||.|++||+.+++  .+..+..|...  |.+++|+|  ++++|++++.||.|++
T Consensus         3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~--v~~~~~~~--~~~~l~~~~~dg~i~v   78 (372)
T 1k8k_C            3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQ--VTGVDWAP--DSNRIVTCGTDRNAYV   78 (372)
T ss_dssp             EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSC--EEEEEEET--TTTEEEEEETTSCEEE
T ss_pred             eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCc--ccEEEEeC--CCCEEEEEcCCCeEEE
Confidence            355699999999999999999999999999999999887  88888888854  99999999  9999999999999999


Q ss_pred             EeCCCCCCCCCCeeee--ecceeeEEEeeeeeccccccccCCCCcceeeccCCce---eeecCCCCCC----ceeccCCC
Q 021291           91 WDIENGGLSSNPSLTI--KTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGET---VDTDSLCDSK----DDVPAEGP  161 (314)
Q Consensus        91 wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~----~~~~~~~~  161 (314)
                      ||+++++...  ....  +........+++... ........+...+|++.....   .......|..    ++|+|+++
T Consensus        79 wd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  155 (372)
T 1k8k_C           79 WTLKGRTWKP--TLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV  155 (372)
T ss_dssp             EEEETTEEEE--EEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS
T ss_pred             EECCCCeeee--eEEeecCCCceeEEEECCCCC-EEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCC
Confidence            9998875322  2221  222333344443321 222334456677788876652   3333455555    89999987


Q ss_pred             ceEEEeecCcCeEEEEecC------------------CCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceE
Q 021291          162 KYMAVAGEQLSEVEIWDLN------------------TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVN  223 (314)
Q Consensus       162 ~~~~~~g~~d~~i~vwd~~------------------~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~  223 (314)
                      .++  +++.|+.|++||++                  .++.+..+.        +|    ...+.++. |+|+   +. +
T Consensus       156 ~l~--~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~----~~~v~~~~-~~~~---~~-~  216 (372)
T 1k8k_C          156 LLA--AGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS--------SS----CGWVHGVC-FSAN---GS-R  216 (372)
T ss_dssp             EEE--EEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC--------CC----SSCEEEEE-ECSS---SS-E
T ss_pred             EEE--EEcCCCCEEEEEcccccccccccccccccccchhhheEecC--------CC----CCeEEEEE-ECCC---CC-E
Confidence            544  56679999999964                  456666665        44    45788887 9998   44 8


Q ss_pred             EEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCC
Q 021291          224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH  283 (314)
Q Consensus       224 l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~  283 (314)
                      |++++.|+.|++||+++ ++++..+..|..+|.+++|+|++.+|+++ .|+.|++|+++.
T Consensus       217 l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          217 VAWVSHDSTVCLADADK-KMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             EEEEETTTEEEEEEGGG-TTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             EEEEeCCCEEEEEECCC-CceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence            99999999999999998 88999999999999999999999988887 899999999988

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-33  Score=237.43  Aligned_cols=261  Identities=13%  Similarity=0.155  Sum_probs=190.3

Q ss_pred             CCCCceEEe-cCCCCceeEEEEcc-CCCEEEEecCCCeEEEEeCCC---Ce---EEEEEeccCCcccEEEEEEcccCCCC
Q 021291            6 PPPDPVAVL-RGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQ---HR---TVSSSWVHSAAHGIVSVATGPSIGLN   77 (314)
Q Consensus         6 ~~~~~~~~l-~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~---~~---~~~~~~~~~~~~~v~~~~~~~~~~~~   77 (314)
                      +.++++..+ ++|.+.|++++|+| ++++|++|+.||+|+|||+.+   +.   ....+ .|.  ..|.+++|+|  +++
T Consensus        50 ~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~--~~v~~~~~~~--~~~  124 (437)
T 3gre_A           50 LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCS--STVTQITMIP--NFD  124 (437)
T ss_dssp             CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECS--SCEEEEEECT--TSS
T ss_pred             ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCC--CCEEEEEEeC--CCC
Confidence            456788889 99999999999999 999999999999999999876   33   23333 366  4599999999  999


Q ss_pred             eEEEeecCCeEEEEeCC---CCCCCCCCeeeeecceeeEEEeee------------ee---ccccccccCCCCcceeecc
Q 021291           78 KVISQGRDGTVKCWDIE---NGGLSSNPSLTIKTNSYHFCKLSL------------VK---EPYANAKQANEPKDCYERE  139 (314)
Q Consensus        78 ~l~s~~~dg~v~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~------------~~---~~~~~~~~~~~~~~~~~~~  139 (314)
                      +|++++.||+|++||++   +++...    ...........+..            ..   ..........+...+|+++
T Consensus       125 ~l~s~s~dg~i~vwd~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~  200 (437)
T 3gre_A          125 AFAVSSKDGQIIVLKVNHYQQESEVK----FLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIR  200 (437)
T ss_dssp             EEEEEETTSEEEEEEEEEEEETTEEE----EEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETT
T ss_pred             EEEEEeCCCEEEEEEeccccCCceee----ccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence            99999999999999995   443321    11111111111111            11   1222334445667788887


Q ss_pred             CCceeeecCCC-CCC----ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEec
Q 021291          140 VGETVDTDSLC-DSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYL  214 (314)
Q Consensus       140 ~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  214 (314)
                      ........... |..    ++|+|+++.++  +|+.||.|++||+++++.+..+..       +|    ...+.++. |+
T Consensus       201 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~--s~~~dg~i~iwd~~~~~~~~~~~~-------~~----~~~v~~~~-~~  266 (437)
T 3gre_A          201 TLERLQIIENSPRHGAVSSICIDEECCVLI--LGTTRGIIDIWDIRFNVLIRSWSF-------GD----HAPITHVE-VC  266 (437)
T ss_dssp             TCCEEEEEECCGGGCCEEEEEECTTSCEEE--EEETTSCEEEEETTTTEEEEEEBC-------TT----CEEEEEEE-EC
T ss_pred             CCeeeEEEccCCCCCceEEEEECCCCCEEE--EEcCCCeEEEEEcCCccEEEEEec-------CC----CCceEEEE-ec
Confidence            76654433321 444    89999987544  677799999999999998887752       23    34677885 66


Q ss_pred             CCCC-CCceEEEEeecCCcEEEEEccCCCCceEeeec--------------------------CCcceEEEEEeCCCCeE
Q 021291          215 PSKS-QGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV--------------------------HLEPVLCLSIDESCNGG  267 (314)
Q Consensus       215 p~~~-~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~--------------------------h~~~v~~~~~~~~~~~l  267 (314)
                      |.-. ++. +|++|+.||.|++||+++ ++++..+.+                          |...|++++|+ ++.+|
T Consensus       267 ~~~s~~~~-~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l  343 (437)
T 3gre_A          267 QFYGKNSV-IVVGGSSKTFLTIWNFVK-GHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKIL  343 (437)
T ss_dssp             TTTCTTEE-EEEEESTTEEEEEEETTT-TEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEE
T ss_pred             cccCCCcc-EEEEEcCCCcEEEEEcCC-CcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEE
Confidence            6422 244 899999999999999997 666666553                          55678899999 77899


Q ss_pred             EEecCCCcEEEEecCCCeeeEeeee
Q 021291          268 ISGGADQKIVLYNLDHSTYVLFGIG  292 (314)
Q Consensus       268 ~s~s~dg~i~iw~~~~~~~~~~~~~  292 (314)
                      ++|+.||.|++||+.+++.+..+.+
T Consensus       344 ~s~~~d~~i~~wd~~~~~~~~~~~~  368 (437)
T 3gre_A          344 LTDEATSSIVMFSLNELSSSKAVIS  368 (437)
T ss_dssp             EEEGGGTEEEEEETTCGGGCEEEEC
T ss_pred             EecCCCCeEEEEECCCcccceEEec
Confidence            9999999999999999987766544

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.7e-34  Score=239.46  Aligned_cols=252  Identities=15%  Similarity=0.151  Sum_probs=193.0

Q ss_pred             CCceEEecCCCCceeEEEEccC-CCEEEEecCCCeEEEEeCCCCe------EEEE---EeccCCcccEEEEEEcccCC-C
Q 021291            8 PDPVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHR------TVSS---SWVHSAAHGIVSVATGPSIG-L   76 (314)
Q Consensus         8 ~~~~~~l~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~------~~~~---~~~~~~~~~v~~~~~~~~~~-~   76 (314)
                      .+.+..+.+|...|++++|+|+ +++|++++.||.|++||+.+++      ....   +..|.  ..|.+++|+|  + +
T Consensus       103 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~--~~~  178 (416)
T 2pm9_A          103 INSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSV--DEVISLAWNQ--SLA  178 (416)
T ss_dssp             CCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSS--CCCCEEEECS--SCT
T ss_pred             ccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCC--CCeeEEEeCC--CCC
Confidence            3588899999999999999998 8999999999999999998876      3322   24566  4599999999  7 7


Q ss_pred             CeEEEeecCCeEEEEeCCCCCCCCCCeeeee------cceeeEEEeeeeeccccccccCCC---CcceeeccCCceeeec
Q 021291           77 NKVISQGRDGTVKCWDIENGGLSSNPSLTIK------TNSYHFCKLSLVKEPYANAKQANE---PKDCYEREVGETVDTD  147 (314)
Q Consensus        77 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  147 (314)
                      .+|++++.||.|++||+++++...  .+...      ........+++............+   ...+|+++........
T Consensus       179 ~~l~~~~~dg~v~iwd~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~  256 (416)
T 2pm9_A          179 HVFASAGSSNFASIWDLKAKKEVI--HLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQT  256 (416)
T ss_dssp             TEEEEESSSSCEEEEETTTTEEEE--EECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBC
T ss_pred             cEEEEEcCCCCEEEEECCCCCcce--EEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEE
Confidence            899999999999999999876533  22222      233444455544433344444444   7888999887555555


Q ss_pred             CC-CCCC----ceecc-CCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCc
Q 021291          148 SL-CDSK----DDVPA-EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGF  221 (314)
Q Consensus       148 ~~-~~~~----~~~~~-~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~  221 (314)
                      +. +|..    ++|+| +++ +++ +++.|+.|++||+++++.+..+.        +|.    ..+.++. |+|+++  .
T Consensus       257 ~~~~~~~~v~~~~~s~~~~~-~l~-s~~~dg~v~~wd~~~~~~~~~~~--------~~~----~~v~~~~-~s~~~~--~  319 (416)
T 2pm9_A          257 LNQGHQKGILSLDWCHQDEH-LLL-SSGRDNTVLLWNPESAEQLSQFP--------ARG----NWCFKTK-FAPEAP--D  319 (416)
T ss_dssp             CCSCCSSCEEEEEECSSCSS-CEE-EEESSSEEEEECSSSCCEEEEEE--------CSS----SCCCCEE-ECTTCT--T
T ss_pred             eecCccCceeEEEeCCCCCC-eEE-EEeCCCCEEEeeCCCCccceeec--------CCC----CceEEEE-ECCCCC--C
Confidence            65 6666    89999 665 444 56679999999999999988888        663    4677777 999831  3


Q ss_pred             eEEEEeecCCcEEEEEccCCCCceEee-----------------------------------ecCCcceEEEEEeCCCCe
Q 021291          222 VNVLAGYEDGSILVWDIRNPGIPLTAM-----------------------------------KVHLEPVLCLSIDESCNG  266 (314)
Q Consensus       222 ~~l~~g~~dg~i~vwd~~~~~~~~~~~-----------------------------------~~h~~~v~~~~~~~~~~~  266 (314)
                       +|++++.|+.|++||+.... .....                                   ..|..++.+++|+|+|++
T Consensus       320 -~l~s~~~d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~  397 (416)
T 2pm9_A          320 -LFACASFDNKIEVQTLQNLT-NTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKL  397 (416)
T ss_dssp             -EEEECCSSSEEEEEESCCCC-CSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEE
T ss_pred             -EEEEEecCCcEEEEEccCCC-CCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeE
Confidence             89999999999999998633 22111                                   116778889999999999


Q ss_pred             EEEecCCCcEEEEecCCC
Q 021291          267 GISGGADQKIVLYNLDHS  284 (314)
Q Consensus       267 l~s~s~dg~i~iw~~~~~  284 (314)
                      |++++.||.|+||++.++
T Consensus       398 la~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          398 VQITPDGKGVSITNPKIS  415 (416)
T ss_dssp             ECBCTTSSCBCCBCCCCC
T ss_pred             EEEeCCCCeEEEEEeccC
Confidence            999999999999999875

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-31  Score=221.69  Aligned_cols=255  Identities=13%  Similarity=0.142  Sum_probs=200.9

Q ss_pred             CCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC-
Q 021291            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD-   85 (314)
Q Consensus         7 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-   85 (314)
                      .++.+..+.+|...|.+++|+|++++|++++.||.|++||+.+++.+..+. +.  ..|.+++|+|  ++++|++++.+ 
T Consensus        63 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~--~~v~~~~~~~--~~~~l~~~~~~~  137 (369)
T 3zwl_B           63 NGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SP--VPVKRVEFSP--CGNYFLAILDNV  137 (369)
T ss_dssp             TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CS--SCEEEEEECT--TSSEEEEEECCB
T ss_pred             CchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cC--CCeEEEEEcc--CCCEEEEecCCc
Confidence            457889999999999999999999999999999999999999999998887 55  4599999999  99999999998 


Q ss_pred             ----CeEEEEeCCCCCCCCCC-------eeeeecc----eeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCC
Q 021291           86 ----GTVKCWDIENGGLSSNP-------SLTIKTN----SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLC  150 (314)
Q Consensus        86 ----g~v~iwd~~~~~~~~~~-------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (314)
                          +.|++||+.........       .......    ......+++... ........+...+|++.........+..
T Consensus       138 ~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~  216 (369)
T 3zwl_B          138 MKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGK-YIIAGHKDGKISKYDVSNNYEYVDSIDL  216 (369)
T ss_dssp             TTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGC-EEEEEETTSEEEEEETTTTTEEEEEEEC
T ss_pred             cCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCC-EEEEEcCCCEEEEEECCCCcEeEEEEec
Confidence                99999999877543310       1111111    222333333222 2223344466778888875555555555


Q ss_pred             CCC----ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEE
Q 021291          151 DSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA  226 (314)
Q Consensus       151 ~~~----~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~  226 (314)
                      |..    ++|+|+++.++  +++.|+.|++||+++++.+..+..             ...+..+. |+|+   ++ ++++
T Consensus       217 ~~~~v~~~~~~~~~~~l~--~~~~d~~i~v~d~~~~~~~~~~~~-------------~~~~~~~~-~~~~---~~-~l~~  276 (369)
T 3zwl_B          217 HEKSISDMQFSPDLTYFI--TSSRDTNSFLVDVSTLQVLKKYET-------------DCPLNTAV-ITPL---KE-FIIL  276 (369)
T ss_dssp             CSSCEEEEEECTTSSEEE--EEETTSEEEEEETTTCCEEEEEEC-------------SSCEEEEE-ECSS---SS-EEEE
T ss_pred             CCCceeEEEECCCCCEEE--EecCCceEEEEECCCCceeeeecC-------------CCCceeEE-ecCC---Cc-eEEE
Confidence            555    89999987554  566789999999999998887762             44677787 9998   55 8888


Q ss_pred             eecCC--------------cEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeE
Q 021291          227 GYEDG--------------SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVL  288 (314)
Q Consensus       227 g~~dg--------------~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~  288 (314)
                      ++.++              .+++||..+ ++++..+.+|...|++++|+|++++|++++.||.|++|+++.+....
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~  351 (369)
T 3zwl_B          277 GGGQEAKDVTTTSANEGKFEARFYHKIF-EEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDF  351 (369)
T ss_dssp             EECCC-------------CEEEEEETTT-CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHTC
T ss_pred             eecCCCceEEEEecCCCcceeEEEecCC-CcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccchh
Confidence            88888              899999998 88999999999999999999999999999999999999998765443

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=5.6e-32  Score=228.45  Aligned_cols=235  Identities=18%  Similarity=0.271  Sum_probs=178.3

Q ss_pred             CCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC
Q 021291            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (314)
Q Consensus         7 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg   86 (314)
                      .++++..+.+|.+.|++++|+|++++|++|+.||.|++||+.+++.+..+.+|...  |.+++|+|  ++++|++++.|+
T Consensus       128 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~--v~~~~~~~--~~~~l~s~~~d~  203 (420)
T 3vl1_A          128 FNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRAT--VTDIAIID--RGRNVLSASLDG  203 (420)
T ss_dssp             SCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSC--EEEEEEET--TTTEEEEEETTS
T ss_pred             CcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCc--EEEEEEcC--CCCEEEEEcCCC
Confidence            34567777899999999999999999999999999999999999999999999855  99999999  999999999999


Q ss_pred             eEEEEeCCCCCCCCCCeeeee---cceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCce
Q 021291           87 TVKCWDIENGGLSSNPSLTIK---TNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY  163 (314)
Q Consensus        87 ~v~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (314)
                      +|++||+++++...  .+...   ........+.+.....           ....        .......++|+|+++.+
T Consensus       204 ~v~iwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~-----------~~~~--------~~~~v~~~~~s~~~~~l  262 (420)
T 3vl1_A          204 TIRLWECGTGTTIH--TFNRKENPHDGVNSIALFVGTDRQ-----------LHEI--------STSKKNNLEFGTYGKYV  262 (420)
T ss_dssp             CEEEEETTTTEEEE--EECBTTBTTCCEEEEEEEECCCSS-----------CGGG--------CCCCCCTTCSSCTTEEE
T ss_pred             cEEEeECCCCceeE--EeecCCCCCCCccEEEEecCCcce-----------eeec--------ccCcccceEEcCCCCEE
Confidence            99999999886533  11111   1111222221111000           0000        00011117899998754


Q ss_pred             EEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCC
Q 021291          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI  243 (314)
Q Consensus       164 ~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~  243 (314)
                      +  +|+.||.|++||+++++.+..+..       +|    ...+.++. |+|+   +..+|++|+.||.|++||+++...
T Consensus       263 ~--~~~~dg~i~i~d~~~~~~~~~~~~-------~~----~~~v~~~~-~~~~---~~~~l~~g~~dg~i~vwd~~~~~~  325 (420)
T 3vl1_A          263 I--AGHVSGVITVHNVFSKEQTIQLPS-------KF----TCSCNSLT-VDGN---NANYIYAGYENGMLAQWDLRSPEC  325 (420)
T ss_dssp             E--EEETTSCEEEEETTTCCEEEEECC-------TT----SSCEEEEE-ECSS---CTTEEEEEETTSEEEEEETTCTTS
T ss_pred             E--EEcCCCeEEEEECCCCceeEEccc-------cc----CCCceeEE-EeCC---CCCEEEEEeCCCeEEEEEcCCCcC
Confidence            4  567799999999999988777753       34    45788887 9998   333899999999999999998556


Q ss_pred             ceEeeec-CCcceEEEEEeCCCCeEEEecCCCcEEEEecCCC
Q 021291          244 PLTAMKV-HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS  284 (314)
Q Consensus       244 ~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~  284 (314)
                      ++..+.+ |...|.++.+. ++.+|++++.||.|++|++..+
T Consensus       326 ~~~~~~~~~~~~v~~~~~~-~~~~l~s~~~d~~v~iw~~~~~  366 (420)
T 3vl1_A          326 PVGEFLINEGTPINNVYFA-AGALFVSSGFDTSIKLDIISDP  366 (420)
T ss_dssp             CSEEEEESTTSCEEEEEEE-TTEEEEEETTTEEEEEEEECCT
T ss_pred             chhhhhccCCCCceEEEeC-CCCEEEEecCCccEEEEeccCC
Confidence            6788887 66788888655 6779999999999999998874

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=7.2e-33  Score=229.42  Aligned_cols=202  Identities=10%  Similarity=0.011  Sum_probs=153.6

Q ss_pred             CCCceeEEEEccCCCEEE--EecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCC
Q 021291           17 HRASVTDVCFHQTKPILF--AGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE   94 (314)
Q Consensus        17 h~~~v~~~~~~~~~~~l~--s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~   94 (314)
                      +...+.+++|+|||++|+  +++.|++|+|||+++++++..+. |..  .|.+++|+|  ++++|++++.+ .+++|+..
T Consensus       132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~--~V~~v~fsp--dg~~l~s~s~~-~~~~~~~~  205 (365)
T 4h5i_A          132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRG--EVKDLHFST--DGKVVAYITGS-SLEVISTV  205 (365)
T ss_dssp             TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSS--CCCEEEECT--TSSEEEEECSS-CEEEEETT
T ss_pred             cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCC--ceEEEEEcc--CCceEEeccce-eEEEEEec
Confidence            445688999999999876  45579999999999999998886 553  499999999  99999999855 56677766


Q ss_pred             CCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcC--
Q 021291           95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS--  172 (314)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~--  172 (314)
                      +++...  ......+.....  .                                    ++|+|+++.++.  ++.|+  
T Consensus       206 ~~~~~~--~~~~~~~~~~v~--~------------------------------------v~fspdg~~l~~--~s~d~~~  243 (365)
T 4h5i_A          206 TGSCIA--RKTDFDKNWSLS--K------------------------------------INFIADDTVLIA--ASLKKGK  243 (365)
T ss_dssp             TCCEEE--EECCCCTTEEEE--E------------------------------------EEEEETTEEEEE--EEESSSC
T ss_pred             cCccee--eeecCCCCCCEE--E------------------------------------EEEcCCCCEEEE--EecCCcc
Confidence            664321  001111111100  0                                    568999876654  33344  


Q ss_pred             --eEEEEecCCCcee----eeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceE
Q 021291          173 --EVEIWDLNTAERC----TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (314)
Q Consensus       173 --~i~vwd~~~~~~~----~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~  246 (314)
                        .+++||+......    ..+.        +|    ...+.+++ |+|+   |+ +|++|+.|+.|+|||+++ ++++.
T Consensus       244 ~~~i~~~~~~~~~~~~~~~~~~~--------~~----~~~V~~~~-~Spd---g~-~lasgs~D~~V~iwd~~~-~~~~~  305 (365)
T 4h5i_A          244 GIVLTKISIKSGNTSVLRSKQVT--------NR----FKGITSMD-VDMK---GE-LAVLASNDNSIALVKLKD-LSMSK  305 (365)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEE--------SS----CSCEEEEE-ECTT---SC-EEEEEETTSCEEEEETTT-TEEEE
T ss_pred             eeEEeecccccceecceeeeeec--------CC----CCCeEeEE-ECCC---CC-ceEEEcCCCEEEEEECCC-CcEEE
Confidence              6888998766532    2233        44    44688888 9998   55 999999999999999998 78887


Q ss_pred             e-eecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCC
Q 021291          247 A-MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS  284 (314)
Q Consensus       247 ~-~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~  284 (314)
                      . +.+|..+|++|+|+|+|++|+|||.|++|+||++...
T Consensus       306 ~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          306 IFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             EecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            7 4799999999999999999999999999999999754

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-32  Score=229.70  Aligned_cols=238  Identities=14%  Similarity=0.211  Sum_probs=187.5

Q ss_pred             CCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCC
Q 021291           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG   96 (314)
Q Consensus        17 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~   96 (314)
                      |.+.|++++|+|++++|++|+.||.|++|| .+++.+..+..|...  |.+++|+|  ++++|++++.|+.|++||+.++
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~--v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~  181 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAP--IVSVKWNK--DGTHIISMDVENVTILWNVISG  181 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSC--EEEEEECT--TSSEEEEEETTCCEEEEETTTT
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCcc--EEEEEECC--CCCEEEEEecCCeEEEEECCCC
Confidence            788999999999999999999999999999 678888889888854  99999999  9999999999999999999987


Q ss_pred             CCCCCCeeeeecce---------------eeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceec
Q 021291           97 GLSSNPSLTIKTNS---------------YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVP  157 (314)
Q Consensus        97 ~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  157 (314)
                      +...  .+......               .....+.  ...........+...+|++....... .+..|..    ++|+
T Consensus       182 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~i~~~d~~~~~~~~-~~~~~~~~i~~~~~~  256 (425)
T 1r5m_A          182 TVMQ--HFELKETGGSSINAENHSGDGSLGVDVEWV--DDDKFVIPGPKGAIFVYQITEKTPTG-KLIGHHGPISVLEFN  256 (425)
T ss_dssp             EEEE--EECCC---------------CCCBSCCEEE--ETTEEEEECGGGCEEEEETTCSSCSE-EECCCSSCEEEEEEE
T ss_pred             cEEE--EeeccccCccceeeccccCCcceeeEEEEc--CCCEEEEEcCCCeEEEEEcCCCceee-eeccCCCceEEEEEC
Confidence            6533  11111111               1111222  22223334444566777776654333 2334444    8999


Q ss_pred             cCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEE
Q 021291          158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD  237 (314)
Q Consensus       158 ~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd  237 (314)
                      |+++.++  +++.|+.|++||+++++....+.        +|    ...+.++. |+|+   +  ++++++.|+.|++||
T Consensus       257 ~~~~~l~--~~~~d~~i~i~d~~~~~~~~~~~--------~~----~~~i~~~~-~~~~---~--~l~~~~~d~~i~i~d  316 (425)
T 1r5m_A          257 DTNKLLL--SASDDGTLRIWHGGNGNSQNCFY--------GH----SQSIVSAS-WVGD---D--KVISCSMDGSVRLWS  316 (425)
T ss_dssp             TTTTEEE--EEETTSCEEEECSSSBSCSEEEC--------CC----SSCEEEEE-EETT---T--EEEEEETTSEEEEEE
T ss_pred             CCCCEEE--EEcCCCEEEEEECCCCccceEec--------CC----CccEEEEE-ECCC---C--EEEEEeCCCcEEEEE
Confidence            9987444  56678999999999998888876        55    44678887 9997   4  799999999999999


Q ss_pred             ccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCe
Q 021291          238 IRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST  285 (314)
Q Consensus       238 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~  285 (314)
                      +++ ++++..+..|...|.+++|+|++.+|++++.||.|++||+.+++
T Consensus       317 ~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          317 LKQ-NTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLN  363 (425)
T ss_dssp             TTT-TEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred             CCC-CcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence            998 88889999999999999999999999999999999999998877

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.7e-31  Score=221.28  Aligned_cols=280  Identities=14%  Similarity=0.183  Sum_probs=197.4

Q ss_pred             CCCCCceEEecCCCCceeEEEEccC---CCEEEEecCCCeEEEEeCCC-CeEE-EEEeccCCcccEEEEEEcccCCCCeE
Q 021291            5 PPPPDPVAVLRGHRASVTDVCFHQT---KPILFAGTTGGELRIWDTVQ-HRTV-SSSWVHSAAHGIVSVATGPSIGLNKV   79 (314)
Q Consensus         5 ~~~~~~~~~l~~h~~~v~~~~~~~~---~~~l~s~~~dg~v~iwd~~~-~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l   79 (314)
                      ..|.+.++.+++|.+.|++++|+|+   |++|++|+.||.|+|||+.+ ++.+ ..+.+|...  |.+++|+|  ++++|
T Consensus        26 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~--v~~~~~~~--~~~~l  101 (368)
T 3mmy_A           26 HNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGP--VLDVCWSD--DGSKV  101 (368)
T ss_dssp             SCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSC--EEEEEECT--TSSEE
T ss_pred             CCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCC--EEEEEECc--CCCEE
Confidence            3566889999999999999999998   69999999999999999987 5554 778888854  99999999  99999


Q ss_pred             EEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeecc-ccccccCCCCcceeeccCCceeeecCCCCCC-ceec
Q 021291           80 ISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEP-YANAKQANEPKDCYEREVGETVDTDSLCDSK-DDVP  157 (314)
Q Consensus        80 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  157 (314)
                      ++++.||.|++||+++++...   ...+........+.+.... ........+...+|++........ +..+.. .++.
T Consensus       102 ~s~~~dg~v~iwd~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~  177 (368)
T 3mmy_A          102 FTASCDKTAKMWDLSSNQAIQ---IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMV-LQLPERCYCAD  177 (368)
T ss_dssp             EEEETTSEEEEEETTTTEEEE---EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEE-EECSSCEEEEE
T ss_pred             EEEcCCCcEEEEEcCCCCcee---eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEE-EecCCCceEEE
Confidence            999999999999999886432   1222333333333212211 123334456677788776653332 222333 4455


Q ss_pred             cCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEE
Q 021291          158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD  237 (314)
Q Consensus       158 ~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd  237 (314)
                      +....+++  ++.++.+++||++..........        ........+.+   +.++.......+++++.||.|++||
T Consensus       178 ~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~--------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~dg~i~i~~  244 (368)
T 3mmy_A          178 VIYPMAVV--ATAERGLIVYQLENQPSEFRRIE--------SPLKHQHRCVA---IFKDKQNKPTGFALGSIEGRVAIHY  244 (368)
T ss_dssp             EETTEEEE--EEGGGCEEEEECSSSCEEEEECC--------CSCSSCEEEEE---EEECTTSCEEEEEEEETTSEEEEEE
T ss_pred             ecCCeeEE--EeCCCcEEEEEeccccchhhhcc--------ccccCCCceEE---EcccCCCCCCeEEEecCCCcEEEEe
Confidence            55554443  44479999999987655433321        11111223333   3333211112599999999999999


Q ss_pred             ccCCC--CceEeeecCCc------------ceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe-------eeeeeec
Q 021291          238 IRNPG--IPLTAMKVHLE------------PVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF-------GIGFVCD  296 (314)
Q Consensus       238 ~~~~~--~~~~~~~~h~~------------~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~-------~~~~~~~  296 (314)
                      ++...  ..+..+.+|..            +|++++|+|++.+|++++.||.|++||+++++.+..       +..++++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  324 (368)
T 3mmy_A          245 INPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFN  324 (368)
T ss_dssp             SSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEEC
T ss_pred             cCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEEC
Confidence            99732  56777888876            799999999999999999999999999999988765       3456788


Q ss_pred             CCCceecee
Q 021291          297 QEGNKFGTT  305 (314)
Q Consensus       297 ~~~~~~~~~  305 (314)
                      |+|..+++.
T Consensus       325 ~~g~~l~~~  333 (368)
T 3mmy_A          325 HNGNIFAYA  333 (368)
T ss_dssp             TTSSCEEEE
T ss_pred             CCCCeEEEE
Confidence            888777653

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=9.2e-32  Score=220.92  Aligned_cols=251  Identities=13%  Similarity=0.078  Sum_probs=188.5

Q ss_pred             eEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCe---EEEEEeccCCcccEEEEEEcccCCCC-eEEEeecCC
Q 021291           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR---TVSSSWVHSAAHGIVSVATGPSIGLN-KVISQGRDG   86 (314)
Q Consensus        11 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg   86 (314)
                      +....+|.+.|++++|+|++++|++++.||.|+|||+.+++   ....+..|..  .|.+++|+|  +++ +|++++.||
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~--~v~~~~~~~--~~~~~l~~~~~dg   79 (342)
T 1yfq_A            4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKH--PLLCCNFID--NTDLQIYVGTVQG   79 (342)
T ss_dssp             EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSS--CEEEEEEEE--SSSEEEEEEETTS
T ss_pred             eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCC--ceEEEEECC--CCCcEEEEEcCCC
Confidence            34556899999999999999999999999999999998776   3445557774  499999999  899 999999999


Q ss_pred             eEEEEeC-CCCCCCCCCeeee--ecceeeEEEeeeeeccccccccCCCCcceeeccC---------CceeeecCCCCCC-
Q 021291           87 TVKCWDI-ENGGLSSNPSLTI--KTNSYHFCKLSLVKEPYANAKQANEPKDCYEREV---------GETVDTDSLCDSK-  153 (314)
Q Consensus        87 ~v~iwd~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~-  153 (314)
                      .|++||+ .+++..   .+..  +........+.+  ..........+...+|++..         .... ..+. |.. 
T Consensus        80 ~i~~wd~~~~~~~~---~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~-~~~~  152 (342)
T 1yfq_A           80 EILKVDLIGSPSFQ---ALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS-NNTK-VKNK  152 (342)
T ss_dssp             CEEEECSSSSSSEE---ECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCS-SSSS-SCCC
T ss_pred             eEEEEEeccCCceE---eccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCee-eEEe-eCCc
Confidence            9999999 876531   2222  333344444444  33333444556677777764         3222 2222 333 


Q ss_pred             ---ceeccCCCceEEEeecCcCeEEEEecCC-Cceeee-ecccccCCCCCcCCCCCceeeeEEEecC-CCCCCceEEEEe
Q 021291          154 ---DDVPAEGPKYMAVAGEQLSEVEIWDLNT-AERCTR-LHQNSCGGSPNFSSKGRGMCMAVQAYLP-SKSQGFVNVLAG  227 (314)
Q Consensus       154 ---~~~~~~~~~~~~~~g~~d~~i~vwd~~~-~~~~~~-~~~~~~~~~~~h~~~~~~~~~~~~~~~p-~~~~g~~~l~~g  227 (314)
                         ++|++++   ++ +++.|+.|++||+++ +..... ...       .|    ...+.++. |+| +   +. +++++
T Consensus       153 v~~~~~~~~~---l~-~~~~d~~i~i~d~~~~~~~~~~~~~~-------~~----~~~i~~i~-~~~~~---~~-~l~~~  212 (342)
T 1yfq_A          153 IFTMDTNSSR---LI-VGMNNSQVQWFRLPLCEDDNGTIEES-------GL----KYQIRDVA-LLPKE---QE-GYACS  212 (342)
T ss_dssp             EEEEEECSSE---EE-EEESTTEEEEEESSCCTTCCCEEEEC-------SC----SSCEEEEE-ECSGG---GC-EEEEE
T ss_pred             eEEEEecCCc---EE-EEeCCCeEEEEECCccccccceeeec-------CC----CCceeEEE-ECCCC---CC-EEEEE
Confidence               7788776   33 566689999999998 553222 221       23    44678887 999 7   44 89999


Q ss_pred             ecCCcEEEEEccCC-----CCceEeeecCCc---------ceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEeeee
Q 021291          228 YEDGSILVWDIRNP-----GIPLTAMKVHLE---------PVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFGIG  292 (314)
Q Consensus       228 ~~dg~i~vwd~~~~-----~~~~~~~~~h~~---------~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~  292 (314)
                      +.||.|++|+++..     .++...+..|..         .|++++|+|++++|++++.||.|++||+.+++.+....+
T Consensus       213 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  291 (342)
T 1yfq_A          213 SIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK  291 (342)
T ss_dssp             ETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred             ecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhc
Confidence            99999999999884     278888888866         999999999999999999999999999999988776544

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=5e-31  Score=225.54  Aligned_cols=254  Identities=15%  Similarity=0.185  Sum_probs=195.8

Q ss_pred             CCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC
Q 021291            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (314)
Q Consensus         7 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg   86 (314)
                      .++++..+.+|.+.|++++|+|++ +|++|+.||+|++||+++++++..+.+|...  |.+++|++..++.+|++++.||
T Consensus       151 ~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~--v~~l~~~~~~~~~~l~s~s~d~  227 (464)
T 3v7d_B          151 NKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNST--VRCLDIVEYKNIKYIVTGSRDN  227 (464)
T ss_dssp             TTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSC--EEEEEEEESSSCEEEEEEETTS
T ss_pred             CCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCc--cEEEEEecCCCCCEEEEEcCCC
Confidence            456788999999999999999988 9999999999999999999999999999855  9999999644778999999999


Q ss_pred             eEEEEeCCCCCCCCCC-------------------eeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeec
Q 021291           87 TVKCWDIENGGLSSNP-------------------SLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTD  147 (314)
Q Consensus        87 ~v~iwd~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (314)
                      +|++||++++......                   ......+......++.. ..........+...+|++....... .
T Consensus       228 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~-~  305 (464)
T 3v7d_B          228 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH-GNIVVSGSYDNTLIVWDVAQMKCLY-I  305 (464)
T ss_dssp             CEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEE-TTEEEEEETTSCEEEEETTTTEEEE-E
T ss_pred             cEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEEE-E
Confidence            9999999987643210                   11111222222222222 2223344455677888887665443 3


Q ss_pred             CCCCCC----ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceE
Q 021291          148 SLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVN  223 (314)
Q Consensus       148 ~~~~~~----~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~  223 (314)
                      +.+|..    ++|+|+++.++  +|+.|+.|++||+++++.+..+.        +|    ...+.++. |++.      +
T Consensus       306 ~~~~~~~v~~~~~~~~~~~l~--sg~~dg~i~vwd~~~~~~~~~~~--------~h----~~~v~~~~-~~~~------~  364 (464)
T 3v7d_B          306 LSGHTDRIYSTIYDHERKRCI--SASMDTTIRIWDLENGELMYTLQ--------GH----TALVGLLR-LSDK------F  364 (464)
T ss_dssp             ECCCSSCEEEEEEETTTTEEE--EEETTSCEEEEETTTTEEEEEEC--------CC----SSCEEEEE-ECSS------E
T ss_pred             ecCCCCCEEEEEEcCCCCEEE--EEeCCCcEEEEECCCCcEEEEEe--------CC----CCcEEEEE-EcCC------E
Confidence            455555    88999987554  67779999999999999998887        66    44677777 8754      8


Q ss_pred             EEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291          224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF  289 (314)
Q Consensus       224 l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~  289 (314)
                      +++|+.||.|++||+++ ....... .|...+..++|++++.+|++++ ||.|++||+++++.+..
T Consensus       365 l~s~s~dg~v~vwd~~~-~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~  427 (464)
T 3v7d_B          365 LVSAAADGSIRGWDAND-YSRKFSY-HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHA  427 (464)
T ss_dssp             EEEEETTSEEEEEETTT-CCEEEEE-ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEES
T ss_pred             EEEEeCCCcEEEEECCC-Cceeeee-cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEeh
Confidence            99999999999999997 5444444 3677888899999999999998 89999999999988764

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.8e-32  Score=232.17  Aligned_cols=253  Identities=15%  Similarity=0.173  Sum_probs=194.6

Q ss_pred             eEEecCCCCceeEEEEccC-CCEEEEecCCCeEEEEeCCC----------CeEEEEEeccCCcccEEEEEEcccCCCC-e
Q 021291           11 VAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQ----------HRTVSSSWVHSAAHGIVSVATGPSIGLN-K   78 (314)
Q Consensus        11 ~~~l~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iwd~~~----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~   78 (314)
                      ...+.+|.+.|++++|+|+ +.+|++++.||.|++||+.+          .+.+..+.+|...  |.+++|+|  ++. +
T Consensus       121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~~~--~~~~~  196 (430)
T 2xyi_A          121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKE--GYGLSWNP--NLNGY  196 (430)
T ss_dssp             EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSC--CCCEEECT--TSTTE
T ss_pred             EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCC--eEEEEeCC--CCCCe
Confidence            3556789999999999997 78999999999999999986          5677888888854  99999999  777 9


Q ss_pred             EEEeecCCeEEEEeCCCCCCCCC-----CeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCc--eeeecCCCC
Q 021291           79 VISQGRDGTVKCWDIENGGLSSN-----PSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE--TVDTDSLCD  151 (314)
Q Consensus        79 l~s~~~dg~v~iwd~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  151 (314)
                      |++++.||+|++||+.++.....     ..+..+........+++............+...+|+++...  .....+..|
T Consensus       197 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~  276 (430)
T 2xyi_A          197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH  276 (430)
T ss_dssp             EEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECC
T ss_pred             EEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecC
Confidence            99999999999999987432110     01222333344444544333444455566778888887653  223333455


Q ss_pred             CC----ceeccCCCceEEEeecCcCeEEEEecCC-CceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEE
Q 021291          152 SK----DDVPAEGPKYMAVAGEQLSEVEIWDLNT-AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA  226 (314)
Q Consensus       152 ~~----~~~~~~~~~~~~~~g~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~  226 (314)
                      ..    ++|+|+++++++ +|+.||.|++||+++ ...+..+.        +|    ...+.++. |+|+   ++.+|++
T Consensus       277 ~~~v~~i~~~p~~~~~l~-tg~~dg~v~vwd~~~~~~~~~~~~--------~h----~~~v~~i~-~sp~---~~~~l~s  339 (430)
T 2xyi_A          277 TAEVNCLSFNPYSEFILA-TGSADKTVALWDLRNLKLKLHSFE--------SH----KDEIFQVQ-WSPH---NETILAS  339 (430)
T ss_dssp             SSCEEEEEECSSCTTEEE-EEETTSEEEEEETTCTTSCSEEEE--------CC----SSCEEEEE-ECSS---CTTEEEE
T ss_pred             CCCeEEEEeCCCCCCEEE-EEeCCCeEEEEeCCCCCCCeEEee--------cC----CCCEEEEE-ECCC---CCCEEEE
Confidence            44    899999987776 566799999999998 45566666        55    45788888 9998   4338999


Q ss_pred             eecCCcEEEEEccCCC-------------CceEeeecCCcceEEEEEeCCCC-eEEEecCCCcEEEEecCCC
Q 021291          227 GYEDGSILVWDIRNPG-------------IPLTAMKVHLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHS  284 (314)
Q Consensus       227 g~~dg~i~vwd~~~~~-------------~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~dg~i~iw~~~~~  284 (314)
                      ++.|+.|++||++..+             +++..+.+|...|++++|+|++. +|++++.||.|++|++...
T Consensus       340 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          340 SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             EETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             EeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            9999999999998622             56677789999999999999999 8999999999999998754

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=4.6e-32  Score=230.05  Aligned_cols=256  Identities=13%  Similarity=0.124  Sum_probs=181.8

Q ss_pred             CceEEecCCCCceeEEEEcc-CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCe
Q 021291            9 DPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (314)
                      ..+..+.+|.+.|++|+|+| ++++|++|+.||+|+|||++++........+.....+.+++|+|  ++.+|++|+.||.
T Consensus       155 ~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~g~~dg~  232 (435)
T 4e54_B          155 PTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSA--SSRMVVTGDNVGN  232 (435)
T ss_dssp             CEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEET--TTTEEEEECSSSB
T ss_pred             eeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECC--CCCEEEEEeCCCc
Confidence            34556779999999999998 78999999999999999998765554444444445588999999  9999999999999


Q ss_pred             EEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceee--ecCCCCCC----ceeccCCC
Q 021291           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVD--TDSLCDSK----DDVPAEGP  161 (314)
Q Consensus        88 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----~~~~~~~~  161 (314)
                      |++||++.... .  .+..+........+++............+...+|+++......  ....+|..    ++|+|++.
T Consensus       233 i~~wd~~~~~~-~--~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~  309 (435)
T 4e54_B          233 VILLNMDGKEL-W--NLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGA  309 (435)
T ss_dssp             EEEEESSSCBC-C--CSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSS
T ss_pred             EeeeccCccee-E--EEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCC
Confidence            99999976532 2  2233444555555555444444445566778889887654332  23345655    88999997


Q ss_pred             ceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCC--ceeeeEEEecCCCCCCceEEEEe------------
Q 021291          162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGR--GMCMAVQAYLPSKSQGFVNVLAG------------  227 (314)
Q Consensus       162 ~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~--~~~~~~~~~~p~~~~g~~~l~~g------------  227 (314)
                      .++  +++.|+.|++||+++++....+.        .|.....  ....... |+|+   +. +++++            
T Consensus       310 ~l~--s~~~D~~i~iwd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~-~~~~---~~-~~~~~~~~d~~~~~~~~  374 (435)
T 4e54_B          310 RLL--TTDQKSEIRVYSASQWDCPLGLI--------PHPHRHFQHLTPIKAA-WHPR---YN-LIVVGRYPDPNFKSCTP  374 (435)
T ss_dssp             EEE--EEESSSCEEEEESSSSSSEEEEC--------CCCCCCCSSSCCCBCE-ECSS---SS-CEEEECCCCTTSCCSST
T ss_pred             eeE--EEcCCCEEEEEECCCCccceEEe--------cccccccccceeEEEE-EcCC---CC-EEEEEEcCCCCeEEEEe
Confidence            554  67779999999999988877765        3332211  1222333 6665   22 33333            


Q ss_pred             ecCCcEEEEEccCCCCceEeee-cCCcceEEE-EEeCCCCeEEEecCCCcEEEEecCCCee
Q 021291          228 YEDGSILVWDIRNPGIPLTAMK-VHLEPVLCL-SIDESCNGGISGGADQKIVLYNLDHSTY  286 (314)
Q Consensus       228 ~~dg~i~vwd~~~~~~~~~~~~-~h~~~v~~~-~~~~~~~~l~s~s~dg~i~iw~~~~~~~  286 (314)
                      ..++.|++||..+ ++.+..+. +|...|.++ +|+|+|.+|++|+ |+.|+||++++++.
T Consensus       375 ~~~~~i~iwd~~~-g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~  433 (435)
T 4e54_B          375 YELRTIDVFDGNS-GKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEART  433 (435)
T ss_dssp             TCCCCEEEECSSS-CCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred             cCCCEEEEEECCC-CcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence            3456899999998 77776654 788889887 6999999999886 78999999998864

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2e-32  Score=226.68  Aligned_cols=276  Identities=11%  Similarity=0.081  Sum_probs=198.6

Q ss_pred             EEecCCCCceeEEEEccC----CCEEEEecCCCeEEEEeCCCCeEEEEEeccC---CcccEEEEEEcccCC----CCeEE
Q 021291           12 AVLRGHRASVTDVCFHQT----KPILFAGTTGGELRIWDTVQHRTVSSSWVHS---AAHGIVSVATGPSIG----LNKVI   80 (314)
Q Consensus        12 ~~l~~h~~~v~~~~~~~~----~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~----~~~l~   80 (314)
                      ....+|.++|++++|+|+    ...+++++.++.|++||+.+++.+..+..+.   +...|.+++|+|  +    +.+|+
T Consensus        12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~l~   89 (366)
T 3k26_A           12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTY--DSNTSHPLLA   89 (366)
T ss_dssp             EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEE--CTTTCCEEEE
T ss_pred             EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEecc--CCCCCCCEEE
Confidence            344589999999999984    4566777777799999999887777666543   225599999999  6    67999


Q ss_pred             EeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeec--CCCCCC----c
Q 021291           81 SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTD--SLCDSK----D  154 (314)
Q Consensus        81 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~  154 (314)
                      +++.||.|++||+.+++...  .+..+........+++............+...+|++.........  +..|..    +
T Consensus        90 ~~~~dg~i~v~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~  167 (366)
T 3k26_A           90 VAGSRGIIRIINPITMQCIK--HYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA  167 (366)
T ss_dssp             EEETTCEEEEECTTTCCEEE--EEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEE
T ss_pred             EecCCCEEEEEEchhceEee--eecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEE
Confidence            99999999999999886543  233334444445555423333444555678889999877655443  245555    8


Q ss_pred             eeccCCCceEEEeecCcCeEEEEecCCCceeeeeccccc--------------------CCCCCcCCCCCceeeeEEEec
Q 021291          155 DVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSC--------------------GGSPNFSSKGRGMCMAVQAYL  214 (314)
Q Consensus       155 ~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~--------------------~~~~~h~~~~~~~~~~~~~~~  214 (314)
                      +|+|+++.++  +++.|+.|++||+++++....+.....                    ....+|    ...+.++. |+
T Consensus       168 ~~~~~~~~l~--~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~-~~  240 (366)
T 3k26_A          168 DYDLLGEKIM--SCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIH----RNYVDCVR-WL  240 (366)
T ss_dssp             EECTTSSEEE--EEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSC----SSCCCEEE-EE
T ss_pred             EECCCCCEEE--EecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCC----cceEEEEE-Ec
Confidence            9999987554  566799999999998775543331000                    000013    45677777 88


Q ss_pred             CCCCCCceEEEEeecCCcEEEEEccCCC-------------CceEeeecCCcceEEEEEeCC--CCeEEEecCCCcEEEE
Q 021291          215 PSKSQGFVNVLAGYEDGSILVWDIRNPG-------------IPLTAMKVHLEPVLCLSIDES--CNGGISGGADQKIVLY  279 (314)
Q Consensus       215 p~~~~g~~~l~~g~~dg~i~vwd~~~~~-------------~~~~~~~~h~~~v~~~~~~~~--~~~l~s~s~dg~i~iw  279 (314)
                      ++      ++++++.|+.|++||+++..             ..+..+.+|...|++++|+|+  +++|++++.||.|++|
T Consensus       241 ~~------~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vw  314 (366)
T 3k26_A          241 GD------LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVW  314 (366)
T ss_dssp             TT------EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEE
T ss_pred             CC------EEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEE
Confidence            43      89999999999999998732             236778899999999999999  9999999999999999


Q ss_pred             ecCCCeeeE----e---------eeeeeecCCCceece
Q 021291          280 NLDHSTYVL----F---------GIGFVCDQEGNKFGT  304 (314)
Q Consensus       280 ~~~~~~~~~----~---------~~~~~~~~~~~~~~~  304 (314)
                      |+++++...    .         +..+.+++++..+++
T Consensus       315 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  352 (366)
T 3k26_A          315 DLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIA  352 (366)
T ss_dssp             ECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEE
T ss_pred             ECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEE
Confidence            999875321    1         334566777766654

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.3e-31  Score=222.46  Aligned_cols=269  Identities=15%  Similarity=0.111  Sum_probs=198.2

Q ss_pred             CCCceEEe--cCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEec-cCCcccEEEEEEcccCCCCeEEEee
Q 021291            7 PPDPVAVL--RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWV-HSAAHGIVSVATGPSIGLNKVISQG   83 (314)
Q Consensus         7 ~~~~~~~l--~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~   83 (314)
                      |..+.+.+  .+|...+.+.++++++..+++++.||.|++||+.+++....+.. |.  ..|.+++|+|  ++++|++++
T Consensus        78 ~~~p~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~--~~v~~v~~s~--~~~~l~~~~  153 (401)
T 4aez_A           78 NTTPERVLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDES--TYVASVKWSH--DGSFLSVGL  153 (401)
T ss_dssp             CCSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTT--CCEEEEEECT--TSSEEEEEE
T ss_pred             CCCcceeeeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCC--CCEEEEEECC--CCCEEEEEC
Confidence            33344444  47777654433333345688899999999999999998887776 45  5599999999  999999999


Q ss_pred             cCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccC
Q 021291           84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAE  159 (314)
Q Consensus        84 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  159 (314)
                      .||.|++||+.+++...    .+..+......+... ..........+...+|+++........+.+|..    ++|+|+
T Consensus       154 ~dg~i~iwd~~~~~~~~----~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~  228 (401)
T 4aez_A          154 GNGLVDIYDVESQTKLR----TMAGHQARVGCLSWN-RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSD  228 (401)
T ss_dssp             TTSCEEEEETTTCCEEE----EECCCSSCEEEEEEE-TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTT
T ss_pred             CCCeEEEEECcCCeEEE----EecCCCCceEEEEEC-CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCC
Confidence            99999999999886533    333333333333332 233344555667788888865555555666666    889998


Q ss_pred             CCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEee--cCCcEEEEE
Q 021291          160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY--EDGSILVWD  237 (314)
Q Consensus       160 ~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~--~dg~i~vwd  237 (314)
                      ++.++  +|+.|+.|++||+++++....+.        +|    ...+.++. |+|++   ..++++|+  .|+.|++||
T Consensus       229 ~~~l~--s~~~d~~v~iwd~~~~~~~~~~~--------~~----~~~v~~~~-~~p~~---~~ll~~~~gs~d~~i~i~d  290 (401)
T 4aez_A          229 GLQLA--SGGNDNVVQIWDARSSIPKFTKT--------NH----NAAVKAVA-WCPWQ---SNLLATGGGTMDKQIHFWN  290 (401)
T ss_dssp             SSEEE--EEETTSCEEEEETTCSSEEEEEC--------CC----SSCCCEEE-ECTTS---TTEEEEECCTTTCEEEEEE
T ss_pred             CCEEE--EEeCCCeEEEccCCCCCccEEec--------CC----cceEEEEE-ECCCC---CCEEEEecCCCCCEEEEEE
Confidence            87544  57779999999999998888877        55    44677887 99973   32777765  899999999


Q ss_pred             ccCCCCceEeeecCCcceEEEEEeCCCCeEEE--ecCCCcEEEEecCCCeeeEe---------eeeeeecCCCceece
Q 021291          238 IRNPGIPLTAMKVHLEPVLCLSIDESCNGGIS--GGADQKIVLYNLDHSTYVLF---------GIGFVCDQEGNKFGT  304 (314)
Q Consensus       238 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s--~s~dg~i~iw~~~~~~~~~~---------~~~~~~~~~~~~~~~  304 (314)
                      +++ ++++..+. +...|.+++|++++.+|++  |+.||.|++||+.+++....         +..+.++|++..+++
T Consensus       291 ~~~-~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s  366 (401)
T 4aez_A          291 AAT-GARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILST  366 (401)
T ss_dssp             TTT-CCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEE
T ss_pred             CCC-CCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEE
Confidence            998 78887776 6788999999999999998  55899999999998655432         234567777766554

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.2e-31  Score=225.19  Aligned_cols=232  Identities=16%  Similarity=0.247  Sum_probs=178.5

Q ss_pred             CceEEecCCCCceeEEEEcc-CCCEEEEecCCCeEEEEeCCCC-------eEEEEEeccCCcccEEEEEEcccCCC-CeE
Q 021291            9 DPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQH-------RTVSSSWVHSAAHGIVSVATGPSIGL-NKV   79 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l   79 (314)
                      +.+..+.+|.+.|++++|+| ++++|++|+.||.|+|||+.++       +.+..+.+|...  |.+++|+|  ++ ++|
T Consensus        72 ~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~--v~~~~~~p--~~~~~l  147 (402)
T 2aq5_A           72 KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKR--VGIVAWHP--TAQNVL  147 (402)
T ss_dssp             TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSC--EEEEEECS--SBTTEE
T ss_pred             CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCe--EEEEEECc--CCCCEE
Confidence            45667889999999999999 9999999999999999999987       567888889854  99999999  87 699


Q ss_pred             EEeecCCeEEEEeCCCCCCCCCCeeee--ecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceec
Q 021291           80 ISQGRDGTVKCWDIENGGLSSNPSLTI--KTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVP  157 (314)
Q Consensus        80 ~s~~~dg~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (314)
                      ++++.|++|++||+++++...    .+  ..+......                                      ++|+
T Consensus       148 ~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~v~~--------------------------------------~~~~  185 (402)
T 2aq5_A          148 LSAGCDNVILVWDVGTGAAVL----TLGPDVHPDTIYS--------------------------------------VDWS  185 (402)
T ss_dssp             EEEETTSCEEEEETTTTEEEE----EECTTTCCSCEEE--------------------------------------EEEC
T ss_pred             EEEcCCCEEEEEECCCCCccE----EEecCCCCCceEE--------------------------------------EEEC
Confidence            999999999999999875422    22  111111100                                      5689


Q ss_pred             cCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEe---ecCCcEE
Q 021291          158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG---YEDGSIL  234 (314)
Q Consensus       158 ~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g---~~dg~i~  234 (314)
                      |+++.++  +++.|+.|++||+++++.+..+..       +|..   ..+.++. |+|+   +. +|++|   +.|+.|+
T Consensus       186 ~~~~~l~--~~~~d~~i~iwd~~~~~~~~~~~~-------~~~~---~~~~~~~-~~~~---~~-~l~~g~~~~~d~~i~  248 (402)
T 2aq5_A          186 RDGALIC--TSCRDKRVRVIEPRKGTVVAEKDR-------PHEG---TRPVHAV-FVSE---GK-ILTTGFSRMSERQVA  248 (402)
T ss_dssp             TTSSCEE--EEETTSEEEEEETTTTEEEEEEEC-------SSCS---SSCCEEE-ECST---TE-EEEEEECTTCCEEEE
T ss_pred             CCCCEEE--EEecCCcEEEEeCCCCceeeeecc-------CCCC---CcceEEE-EcCC---Cc-EEEEeccCCCCceEE
Confidence            9887554  566799999999999998888731       5532   2366676 9997   55 88888   7899999


Q ss_pred             EEEccCCCCceEeee-cCCcceEEEEEeCCCCeEE-EecCCCcEEEEecCCCee-eEe---------eeeeeecCCCcee
Q 021291          235 VWDIRNPGIPLTAMK-VHLEPVLCLSIDESCNGGI-SGGADQKIVLYNLDHSTY-VLF---------GIGFVCDQEGNKF  302 (314)
Q Consensus       235 vwd~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~-s~s~dg~i~iw~~~~~~~-~~~---------~~~~~~~~~~~~~  302 (314)
                      +||+++...++.... .|...|.+++|+|++.+|+ +|+.||.|++||+.+++. +..         +.+++++|++..+
T Consensus       249 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~  328 (402)
T 2aq5_A          249 LWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLE  328 (402)
T ss_dssp             EEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSC
T ss_pred             EEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccc
Confidence            999998444454444 5778899999999999885 566899999999998873 222         2334556666544


Q ss_pred             c
Q 021291          303 G  303 (314)
Q Consensus       303 ~  303 (314)
                      +
T Consensus       329 ~  329 (402)
T 2aq5_A          329 V  329 (402)
T ss_dssp             G
T ss_pred             e
Confidence            3

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=8.1e-32  Score=222.40  Aligned_cols=243  Identities=14%  Similarity=0.116  Sum_probs=169.9

Q ss_pred             CCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeE-EEeecCC
Q 021291            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKV-ISQGRDG   86 (314)
Q Consensus         8 ~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg   86 (314)
                      .+++..+++|.+.|++++|+|||++|++|+.|| ++|||+++++.......+    .+..+++.+  +++.+ ++++.|+
T Consensus         9 ~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~----~~~~~~~~~--~~~~~~~~~~~d~   81 (355)
T 3vu4_A            9 RNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR----HLSKVRMLH--RTNYVAFVTGVKE   81 (355)
T ss_dssp             ----------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS----CCCEEEECT--TSSEEEEECSSTT
T ss_pred             cCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC----CeEEEEEcC--CCCEEEEEECCcc
Confidence            355667899999999999999999999998886 789999887766554322    267788887  66666 5788889


Q ss_pred             eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCC-ceeeecCCCCCC-ceeccCCCceE
Q 021291           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVG-ETVDTDSLCDSK-DDVPAEGPKYM  164 (314)
Q Consensus        87 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~  164 (314)
                      +|++||+.+++.+.    .+.... ..  ..+...+............+|++... +.+. .+..... .++++  ..++
T Consensus        82 ~v~iWd~~~~~~~~----~~~~~~-~v--~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~-~~~~~~~~~~~s~--~~la  151 (355)
T 3vu4_A           82 VVHIWDDVKKQDVS----RIKVDA-PV--KDLFLSREFIVVSYGDVISVFKFGNPWKRIT-DDIRFGGVCEFSN--GLLV  151 (355)
T ss_dssp             EEEEEETTTTEEEE----EEECSS-CE--EEEEECSSEEEEEETTEEEEEESSTTCCBSS-CCEEEEEEEEEET--TEEE
T ss_pred             EEEEEECCCCcEEE----EEECCC-ce--EEEEEcCCEEEEEEcCEEEEEECCCCceeeE-EeccCCceEEEEc--cEEE
Confidence            99999999887543    222111 11  12222233333344556777777665 2221 1111111 66777  3343


Q ss_pred             EEeecCcCeEEEEecCCCc----------------eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEee
Q 021291          165 AVAGEQLSEVEIWDLNTAE----------------RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY  228 (314)
Q Consensus       165 ~~~g~~d~~i~vwd~~~~~----------------~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~  228 (314)
                      +++|+.||.|++||++++.                .+..+.        +|    ...+.+++ |+|+   |. +|++|+
T Consensus       152 ~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~--------~h----~~~v~~~~-~s~~---g~-~l~s~s  214 (355)
T 3vu4_A          152 YSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK--------AH----TNPIKMVR-LNRK---SD-MVATCS  214 (355)
T ss_dssp             EEESSCTTCEEEEECCC------------------CCEEEC--------CC----SSCEEEEE-ECTT---SS-EEEEEE
T ss_pred             EeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEE--------cc----CCceEEEE-ECCC---CC-EEEEEe
Confidence            3337889999999999865                144555        66    55788898 9998   55 999999


Q ss_pred             cCCc-EEEEEccCCCCceEeee-c-CCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCe
Q 021291          229 EDGS-ILVWDIRNPGIPLTAMK-V-HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST  285 (314)
Q Consensus       229 ~dg~-i~vwd~~~~~~~~~~~~-~-h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~  285 (314)
                      .|++ |++||+++ ++++..+. + |...|++++|+|++++|++++.|+.|++||++.+.
T Consensus       215 ~d~~~v~iwd~~~-~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~  273 (355)
T 3vu4_A          215 QDGTIIRVFKTED-GVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ  273 (355)
T ss_dssp             TTCSEEEEEETTT-CCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred             CCCCEEEEEECCC-CcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence            9998 99999998 88888888 5 99999999999999999999999999999998653

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=6.6e-32  Score=222.94  Aligned_cols=252  Identities=17%  Similarity=0.190  Sum_probs=182.7

Q ss_pred             cCCCCceeEEEEccC---CCEEEEecCCCeEEEEeCCCCe-EEEEEeccCCcccEEEEEE------cccCCCCeEEEeec
Q 021291           15 RGHRASVTDVCFHQT---KPILFAGTTGGELRIWDTVQHR-TVSSSWVHSAAHGIVSVAT------GPSIGLNKVISQGR   84 (314)
Q Consensus        15 ~~h~~~v~~~~~~~~---~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~v~~~~~------~~~~~~~~l~s~~~   84 (314)
                      .+|...|.+++|+|+   +++|++|+.||.|++||+.+++ .+..+.+|...  |.++.|      +|  ++++|++++.
T Consensus        62 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~s~--~~~~l~~~~~  137 (357)
T 3i2n_A           62 IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEI--INAIDGIGGLGIGE--GAPEIVTGSR  137 (357)
T ss_dssp             EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSC--EEEEEEESGGGCC---CCCEEEEEET
T ss_pred             ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccc--eEEEeeccccccCC--CccEEEEEeC
Confidence            379999999999998   6999999999999999999887 88888888854  999965      56  8899999999


Q ss_pred             CCeEEEEeCCCCCCCCCCeeeeecc----eeeEEEeeeeeccc---cccccCCCCcceeeccCCceeeecCCCCCC----
Q 021291           85 DGTVKCWDIENGGLSSNPSLTIKTN----SYHFCKLSLVKEPY---ANAKQANEPKDCYEREVGETVDTDSLCDSK----  153 (314)
Q Consensus        85 dg~v~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  153 (314)
                      ||.|++||+++++.... .+.....    ......+.+...+.   .......+...+|+++.......  ..|..    
T Consensus       138 d~~i~vwd~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~~~~~v~~  214 (357)
T 3i2n_A          138 DGTVKVWDPRQKDDPVA-NMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE--TNIKNGVCS  214 (357)
T ss_dssp             TSCEEEECTTSCSSCSE-EECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE--EECSSCEEE
T ss_pred             CCeEEEEeCCCCCCcce-eccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee--cCCCCceEE
Confidence            99999999998762211 1211111    22233322222222   22333445677888877665332  22222    


Q ss_pred             ceecc---CCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecC
Q 021291          154 DDVPA---EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED  230 (314)
Q Consensus       154 ~~~~~---~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~d  230 (314)
                      ++|+|   +++.++  +++.|+.|++||+++++....+...   ...+|    ...+.++. |+|+   ++.++++|+.|
T Consensus       215 ~~~~~~~~~~~~l~--~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~----~~~v~~~~-~~~~---~~~~l~~~~~d  281 (357)
T 3i2n_A          215 LEFDRKDISMNKLV--ATSLEGKFHVFDMRTQHPTKGFASV---SEKAH----KSTVWQVR-HLPQ---NRELFLTAGGA  281 (357)
T ss_dssp             EEESCSSSSCCEEE--EEESTTEEEEEEEEEEETTTEEEEE---EEECC----SSCEEEEE-EETT---EEEEEEEEETT
T ss_pred             EEcCCCCCCCCEEE--EECCCCeEEEEeCcCCCcccceeee---ccCCC----cCCEEEEE-ECCC---CCcEEEEEeCC
Confidence            89999   776544  4667899999999887655444310   00033    55788887 9997   44479999999


Q ss_pred             CcEEEEEccCCC------------------CceEeeecCCcceEEEEEeCCCCeEE-EecCCCcEEEEecCCCee
Q 021291          231 GSILVWDIRNPG------------------IPLTAMKVHLEPVLCLSIDESCNGGI-SGGADQKIVLYNLDHSTY  286 (314)
Q Consensus       231 g~i~vwd~~~~~------------------~~~~~~~~h~~~v~~~~~~~~~~~l~-s~s~dg~i~iw~~~~~~~  286 (314)
                      |.|++||++...                  +++..+.+|..+|++++|+|++++|+ +++.||.|++||+.+.+.
T Consensus       282 g~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          282 GGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             SEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred             CcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence            999999998632                  35677889999999999999999998 899999999999987654

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8e-33  Score=249.44  Aligned_cols=257  Identities=16%  Similarity=0.153  Sum_probs=186.0

Q ss_pred             eEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCC--CCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTV--QHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (314)
Q Consensus        11 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v   88 (314)
                      +.++.+|.+.|++++|+|++++|++|+.||.|+|||+.  +++.+..+.+|...  |.+++|+|..++++|++|+.||+|
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~--V~~l~~s~~~~~~~l~s~s~Dg~I   79 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGP--VWRVDWAHPKFGTILASCSYDGKV   79 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSC--EEEEEECCTTSCSEEEEEETTSCE
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCc--eEEEEecCCCCCCEEEEEeCCCeE
Confidence            46789999999999999999999999999999999998  45677788888844  999999982228999999999999


Q ss_pred             EEEeCCCCCCCCCCeeeeecceeeEEEeeeee-ccccccccCCCCcceeeccCCce-eeecCCCCCC----ceeccC---
Q 021291           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK-EPYANAKQANEPKDCYEREVGET-VDTDSLCDSK----DDVPAE---  159 (314)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~---  159 (314)
                      ++||+.+++......+..+........+++.. ..........+...+|++..... ......+|..    ++|+|.   
T Consensus        80 ~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~  159 (753)
T 3jro_A           80 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE  159 (753)
T ss_dssp             EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC--
T ss_pred             EEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccc
Confidence            99999987521111222233344444554442 22334445556778888876532 2223344544    888884   


Q ss_pred             ----------CCceEEEeecCcCeEEEEecCCCc----eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEE
Q 021291          160 ----------GPKYMAVAGEQLSEVEIWDLNTAE----RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL  225 (314)
Q Consensus       160 ----------~~~~~~~~g~~d~~i~vwd~~~~~----~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~  225 (314)
                                +.. ++ +|+.||.|++||++++.    ....+.        +|    ...+.++. |+|+...+. +++
T Consensus       160 ~~~~~~~~~d~~~-l~-sgs~dg~I~iwd~~~~~~~~~~~~~~~--------~h----~~~V~~l~-~sp~~~~~~-~l~  223 (753)
T 3jro_A          160 EDGEHNGTKESRK-FV-TGGADNLVKIWKYNSDAQTYVLESTLE--------GH----SDWVRDVA-WSPTVLLRS-YLA  223 (753)
T ss_dssp             -------CGGGCC-EE-EEETTSCEEEEEEETTTTEEEEEEEEC--------CC----SSCEEEEE-ECCCCSSSE-EEE
T ss_pred             cccccccCCCCCE-EE-EEECCCeEEEEeccCCcccceeeeeec--------CC----CCcEEEEE-eccCCCCCC-EEE
Confidence                      554 33 56679999999998774    334444        55    45788888 999832133 899


Q ss_pred             EeecCCcEEEEEccCCCC----ceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCe
Q 021291          226 AGYEDGSILVWDIRNPGI----PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST  285 (314)
Q Consensus       226 ~g~~dg~i~vwd~~~~~~----~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~  285 (314)
                      +|+.||.|++||++....    .+.....|...|++++|+|++.+|++++.||.|++|+++.+.
T Consensus       224 s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          224 SVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             EEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred             EEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence            999999999999987321    334445688999999999999999999999999999998643

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=4e-30  Score=218.84  Aligned_cols=260  Identities=17%  Similarity=0.313  Sum_probs=199.9

Q ss_pred             CCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC
Q 021291            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (314)
Q Consensus         7 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg   86 (314)
                      .++++..+.+|.+.|.+++|+  +++|++|+.||+|++||+.+++.+..+.+|...  |.+++|++    +.+++++.||
T Consensus       148 ~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~--v~~~~~~~----~~l~s~s~dg  219 (445)
T 2ovr_B          148 TGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTST--VRCMHLHE----KRVVSGSRDA  219 (445)
T ss_dssp             TCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSC--EEEEEEET----TEEEEEETTS
T ss_pred             CCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCc--EEEEEecC----CEEEEEeCCC
Confidence            457889999999999999997  569999999999999999999999999999855  99999966    6899999999


Q ss_pred             eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC--ceeccCCCceE
Q 021291           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYM  164 (314)
Q Consensus        87 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  164 (314)
                      +|++||+++++...    .+..+......+... ..........+...+|++....... .+.+|..  .++..++..++
T Consensus       220 ~i~~wd~~~~~~~~----~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~l~  293 (445)
T 2ovr_B          220 TLRVWDIETGQCLH----VLMGHVAAVRCVQYD-GRRVVSGAYDFMVKVWDPETETCLH-TLQGHTNRVYSLQFDGIHVV  293 (445)
T ss_dssp             EEEEEESSSCCEEE----EEECCSSCEEEEEEC-SSCEEEEETTSCEEEEEGGGTEEEE-EECCCSSCEEEEEECSSEEE
T ss_pred             EEEEEECCCCcEEE----EEcCCcccEEEEEEC-CCEEEEEcCCCEEEEEECCCCcEeE-EecCCCCceEEEEECCCEEE
Confidence            99999999886533    333333333333332 2333444556677888887765443 3445655  44444665443


Q ss_pred             EEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCc
Q 021291          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (314)
Q Consensus       165 ~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~  244 (314)
                        +++.|+.|++||+++++.+..+.        +|    ...+.++. ++++      ++++|+.||.|++||+++ +++
T Consensus       294 --~~~~d~~i~i~d~~~~~~~~~~~--------~~----~~~v~~~~-~~~~------~l~~~~~dg~i~vwd~~~-~~~  351 (445)
T 2ovr_B          294 --SGSLDTSIRVWDVETGNCIHTLT--------GH----QSLTSGME-LKDN------ILVSGNADSTVKIWDIKT-GQC  351 (445)
T ss_dssp             --EEETTSCEEEEETTTCCEEEEEC--------CC----CSCEEEEE-EETT------EEEEEETTSCEEEEETTT-CCE
T ss_pred             --EEeCCCeEEEEECCCCCEEEEEc--------CC----cccEEEEE-EeCC------EEEEEeCCCeEEEEECCC-CcE
Confidence              56779999999999999988887        56    33555555 6533      899999999999999998 888


Q ss_pred             eEeeec---CCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEee------------eeeeecCCCceece
Q 021291          245 LTAMKV---HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFG------------IGFVCDQEGNKFGT  304 (314)
Q Consensus       245 ~~~~~~---h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~------------~~~~~~~~~~~~~~  304 (314)
                      +..+.+   |...|++++|++  .+|++|+.||.|++||+.+++.+...            ..++++|++..++.
T Consensus       352 ~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~  424 (445)
T 2ovr_B          352 LQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAV  424 (445)
T ss_dssp             EEEECSTTSCSSCEEEEEECS--SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEE
T ss_pred             EEEEccCCCCCCCEEEEEECC--CEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEE
Confidence            888886   888999999975  58999999999999999999876543            33556677666544

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.5e-30  Score=213.01  Aligned_cols=243  Identities=17%  Similarity=0.240  Sum_probs=184.5

Q ss_pred             ceEEec--CCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCe--EEEEEeccCCcccEEEEEEcccCCCCeEEEeecC
Q 021291           10 PVAVLR--GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD   85 (314)
Q Consensus        10 ~~~~l~--~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (314)
                      .+..+.  +|...|.+++|+|++++|++++.||.|++||+.+++  ....+..|..  .|.+++|+|  ++++|++++.|
T Consensus        87 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~--~i~~~~~~~--~~~~l~~~~~d  162 (337)
T 1gxr_A           87 PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAP--ACYALAISP--DSKVCFSCCSD  162 (337)
T ss_dssp             CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSS--CEEEEEECT--TSSEEEEEETT
T ss_pred             eeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCC--ceEEEEECC--CCCEEEEEeCC
Confidence            444444  899999999999999999999999999999999877  5666777774  499999999  99999999999


Q ss_pred             CeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC---ceeccCCCc
Q 021291           86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK---DDVPAEGPK  162 (314)
Q Consensus        86 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  162 (314)
                      |.|++||+++++...  .+..+........+++... ........+...+|++.......... ....   ++|+|+++.
T Consensus       163 g~v~~~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~  238 (337)
T 1gxr_A          163 GNIAVWDLHNQTLVR--QFQGHTDGASCIDISNDGT-KLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEW  238 (337)
T ss_dssp             SCEEEEETTTTEEEE--EECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSE
T ss_pred             CcEEEEeCCCCceee--eeecccCceEEEEECCCCC-EEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCE
Confidence            999999999876433  2222333334444443322 22233345667788887766544322 1122   899999975


Q ss_pred             eEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCC
Q 021291          163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG  242 (314)
Q Consensus       163 ~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~  242 (314)
                      ++  +++.|+.|++||+++++.. .+.        .|    ...+.++. |+|+   ++ +|++++.||.|++||+.+ +
T Consensus       239 l~--~~~~~~~i~~~~~~~~~~~-~~~--------~~----~~~v~~~~-~~~~---~~-~l~~~~~dg~i~~~~~~~-~  297 (337)
T 1gxr_A          239 LA--VGMESSNVEVLHVNKPDKY-QLH--------LH----ESCVLSLK-FAYC---GK-WFVSTGKDNLLNAWRTPY-G  297 (337)
T ss_dssp             EE--EEETTSCEEEEETTSSCEE-EEC--------CC----SSCEEEEE-ECTT---SS-EEEEEETTSEEEEEETTT-C
T ss_pred             EE--EEcCCCcEEEEECCCCCeE-EEc--------CC----ccceeEEE-ECCC---CC-EEEEecCCCcEEEEECCC-C
Confidence            54  4666899999999987754 333        34    45788887 9998   55 899999999999999998 6


Q ss_pred             CceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecC
Q 021291          243 IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD  282 (314)
Q Consensus       243 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~  282 (314)
                      +.+.. ..|...|.+++|+|++++|++++.||.|++|++.
T Consensus       298 ~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          298 ASIFQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             CEEEE-EECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred             eEEEE-ecCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence            65543 4588999999999999999999999999999963

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-30  Score=219.77  Aligned_cols=265  Identities=13%  Similarity=0.194  Sum_probs=194.6

Q ss_pred             ceEEecC--CCCceeEEEEccCCC-EEEEecCCCeEEEEeC----CCCe------EEEEEec----------cCCcccEE
Q 021291           10 PVAVLRG--HRASVTDVCFHQTKP-ILFAGTTGGELRIWDT----VQHR------TVSSSWV----------HSAAHGIV   66 (314)
Q Consensus        10 ~~~~l~~--h~~~v~~~~~~~~~~-~l~s~~~dg~v~iwd~----~~~~------~~~~~~~----------~~~~~~v~   66 (314)
                      ..+.+..  |.+.|++++|+|+++ +||+|+.||.|++||+    .+++      ....+..          |.  ..|.
T Consensus        35 ~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~  112 (425)
T 1r5m_A           35 FVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTT--NQVT  112 (425)
T ss_dssp             CCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------C--BCEE
T ss_pred             hhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCC--CceE
Confidence            3444544  559999999999999 9999999999999999    8877      4555544          44  4599


Q ss_pred             EEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeee
Q 021291           67 SVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDT  146 (314)
Q Consensus        67 ~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (314)
                      +++|+|  ++++|++++.||.|++|| .+++...  .+..+........+++... ........+...+|++........
T Consensus       113 ~~~~s~--~~~~l~~~~~dg~i~i~~-~~~~~~~--~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~  186 (425)
T 1r5m_A          113 CLAWSH--DGNSIVTGVENGELRLWN-KTGALLN--VLNFHRAPIVSVKWNKDGT-HIISMDVENVTILWNVISGTVMQH  186 (425)
T ss_dssp             EEEECT--TSSEEEEEETTSCEEEEE-TTSCEEE--EECCCCSCEEEEEECTTSS-EEEEEETTCCEEEEETTTTEEEEE
T ss_pred             EEEEcC--CCCEEEEEeCCCeEEEEe-CCCCeee--eccCCCccEEEEEECCCCC-EEEEEecCCeEEEEECCCCcEEEE
Confidence            999999  999999999999999999 3443322  2222233334444443322 222334456677888876654432


Q ss_pred             cCCC------------------CCCceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceee
Q 021291          147 DSLC------------------DSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCM  208 (314)
Q Consensus       147 ~~~~------------------~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  208 (314)
                      ....                  -..++|++++.  ++ +++.|+.|++||+++++.+..+.        +|    ...+.
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~g~i~~~d~~~~~~~~~~~--------~~----~~~i~  251 (425)
T 1r5m_A          187 FELKETGGSSINAENHSGDGSLGVDVEWVDDDK--FV-IPGPKGAIFVYQITEKTPTGKLI--------GH----HGPIS  251 (425)
T ss_dssp             ECCC---------------CCCBSCCEEEETTE--EE-EECGGGCEEEEETTCSSCSEEEC--------CC----SSCEE
T ss_pred             eeccccCccceeeccccCCcceeeEEEEcCCCE--EE-EEcCCCeEEEEEcCCCceeeeec--------cC----CCceE
Confidence            2111                  11178888753  33 46668999999999998887776        55    44678


Q ss_pred             eEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeE
Q 021291          209 AVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVL  288 (314)
Q Consensus       209 ~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~  288 (314)
                      ++. |+|+   ++ +|++++.|+.|++||+++ ++++..+.+|...|.+++|+|++ +|++++.||.|++||+++++.+.
T Consensus       252 ~~~-~~~~---~~-~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~  324 (425)
T 1r5m_A          252 VLE-FNDT---NK-LLLSASDDGTLRIWHGGN-GNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLA  324 (425)
T ss_dssp             EEE-EETT---TT-EEEEEETTSCEEEECSSS-BSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEE
T ss_pred             EEE-ECCC---CC-EEEEEcCCCEEEEEECCC-CccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeE
Confidence            887 9998   44 899999999999999998 78888899999999999999999 89999999999999999988776


Q ss_pred             ee-------eeeeecCCCceece
Q 021291          289 FG-------IGFVCDQEGNKFGT  304 (314)
Q Consensus       289 ~~-------~~~~~~~~~~~~~~  304 (314)
                      ..       ..+.++|++..+++
T Consensus       325 ~~~~~~~~i~~~~~s~~~~~l~~  347 (425)
T 1r5m_A          325 LSIVDGVPIFAGRISQDGQKYAV  347 (425)
T ss_dssp             EEECTTCCEEEEEECTTSSEEEE
T ss_pred             ecccCCccEEEEEEcCCCCEEEE
Confidence            53       34567777776654

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1e-31  Score=223.06  Aligned_cols=253  Identities=12%  Similarity=0.032  Sum_probs=186.5

Q ss_pred             ceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEE--eccCCcccEEEEEEcccCCCCeEEEeecCCe
Q 021291           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSS--WVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (314)
Q Consensus        10 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (314)
                      ++..+.+|...|.+++|+|++++|++++.||.|++||+++++....+  ..|.  ..|.+++|+|  ++++|++++.|+.
T Consensus        44 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~l~~~~~d~~  119 (372)
T 1k8k_C           44 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRIN--RAARCVRWAP--NEKKFAVGSGSRV  119 (372)
T ss_dssp             EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCS--SCEEEEEECT--TSSEEEEEETTSS
T ss_pred             eeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCC--CceeEEEECC--CCCEEEEEeCCCE
Confidence            78889999999999999999999999999999999999988766555  3455  5599999999  9999999999999


Q ss_pred             EEEEeCCCCCCCCCCee--eeecceeeEEEeeeeeccccccccCCCCcceeeccC-----------------CceeeecC
Q 021291           88 VKCWDIENGGLSSNPSL--TIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREV-----------------GETVDTDS  148 (314)
Q Consensus        88 v~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~  148 (314)
                      |++||++.+........  ..+........+++... ........+...+|++..                 .......+
T Consensus       120 v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (372)
T 1k8k_C          120 ISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES  198 (372)
T ss_dssp             EEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC
T ss_pred             EEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCC-EEEEEcCCCCEEEEEcccccccccccccccccccchhhheEec
Confidence            99999988753110000  11122333333333221 222333456677787531                 22334445


Q ss_pred             CCCCC----ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEE
Q 021291          149 LCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNV  224 (314)
Q Consensus       149 ~~~~~----~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l  224 (314)
                      ..|..    ++|+|+++.++  +++.|+.|++||+++++.+..+.        .|    ...+.++. |+|+   +. ++
T Consensus       199 ~~~~~~v~~~~~~~~~~~l~--~~~~d~~i~i~d~~~~~~~~~~~--------~~----~~~v~~~~-~~~~---~~-~l  259 (372)
T 1k8k_C          199 SSSCGWVHGVCFSANGSRVA--WVSHDSTVCLADADKKMAVATLA--------SE----TLPLLAVT-FITE---SS-LV  259 (372)
T ss_dssp             CCCSSCEEEEEECSSSSEEE--EEETTTEEEEEEGGGTTEEEEEE--------CS----SCCEEEEE-EEET---TE-EE
T ss_pred             CCCCCeEEEEEECCCCCEEE--EEeCCCEEEEEECCCCceeEEEc--------cC----CCCeEEEE-EecC---CC-EE
Confidence            56655    89999987544  56679999999999999988887        55    34678887 9997   54 67


Q ss_pred             EEeecCCcEEEEEccC--CC-------------------------------Cce------Eee-ecCCcceEEEEEe-CC
Q 021291          225 LAGYEDGSILVWDIRN--PG-------------------------------IPL------TAM-KVHLEPVLCLSID-ES  263 (314)
Q Consensus       225 ~~g~~dg~i~vwd~~~--~~-------------------------------~~~------~~~-~~h~~~v~~~~~~-~~  263 (314)
                      ++| .|+.|++||++.  ..                               ...      ..+ .+|..+|++++|. ++
T Consensus       260 ~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  338 (372)
T 1k8k_C          260 AAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGG  338 (372)
T ss_dssp             EEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEEST
T ss_pred             EEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCC
Confidence            777 899999999986  10                               000      223 4899999999975 77


Q ss_pred             C---CeEEEecCCCcEEEEecCCCeee
Q 021291          264 C---NGGISGGADQKIVLYNLDHSTYV  287 (314)
Q Consensus       264 ~---~~l~s~s~dg~i~iw~~~~~~~~  287 (314)
                      +   .+|+||+.||.|++|++++++.+
T Consensus       339 g~~~~~l~s~~~Dg~i~~W~~~~~~~~  365 (372)
T 1k8k_C          339 KAKCSQFCTTGMDGGMSIWDVRSLESA  365 (372)
T ss_dssp             TTSCSEEEEEETTSEEEEEEHHHHHHH
T ss_pred             CcceeeEEEecCCCceEEEEecChhHh
Confidence            6   89999999999999999877654

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=2.7e-30  Score=218.26  Aligned_cols=273  Identities=16%  Similarity=0.175  Sum_probs=196.2

Q ss_pred             CCCceEEecCCC----CceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEe
Q 021291            7 PPDPVAVLRGHR----ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ   82 (314)
Q Consensus         7 ~~~~~~~l~~h~----~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~   82 (314)
                      |..|.++|.+..    -.++.|+|+++ ++||+|. |++|+|||..+++....+..+.+...|++|+|+|  ++++|++|
T Consensus        90 ~~~p~~~l~ap~~~~d~y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fsp--dg~~lasg  165 (420)
T 4gga_A           90 PSLPDRILDAPEIRNDYYLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK--EGNYLAVG  165 (420)
T ss_dssp             CSSCSEEEECTTCCCCTTCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECT--TSSEEEEE
T ss_pred             CCCCceEEECCCCcccccceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECC--CCCEEEEE
Confidence            444556665432    13678999975 4777764 9999999999999988887665556799999999  99999999


Q ss_pred             ecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceecc
Q 021291           83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPA  158 (314)
Q Consensus        83 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  158 (314)
                      +.||+|++||+++++.+.    ....+......+.... ..............++..........+.+|..    +.++|
T Consensus       166 s~Dg~v~iWd~~~~~~~~----~~~~h~~~v~~~s~~~-~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~  240 (420)
T 4gga_A          166 TSSAEVQLWDVQQQKRLR----NMTSHSARVGSLSWNS-YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP  240 (420)
T ss_dssp             ETTSCEEEEETTTTEEEE----EECCCSSCEEEEEEET-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred             ECCCeEEEEEcCCCcEEE----EEeCCCCceEEEeeCC-CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecC
Confidence            999999999999987543    4444433333333322 22233344455666777666655566667766    88899


Q ss_pred             CCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEE--eecCCcEEEE
Q 021291          159 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA--GYEDGSILVW  236 (314)
Q Consensus       159 ~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~--g~~dg~i~vw  236 (314)
                      ++..++  +++.|+.+++||..+++......        .........+.++. |+|...  . ++++  |+.|+.|++|
T Consensus       241 ~g~~l~--s~~~D~~v~i~~~~~~~~~~~~~--------~~~~~~~~~V~~~~-~~p~~~--~-~la~~~gs~D~~I~iw  306 (420)
T 4gga_A          241 DGRHLA--SGGNDNLVNVWPSAPGEGGWVPL--------QTFTQHQGAVKAVA-WCPWQS--N-VLATGGGTSDRHIRIW  306 (420)
T ss_dssp             TSSEEE--EEETTSCEEEEESSCCSSCSCCS--------EEECCCSSCEEEEE-ECTTCT--T-EEEEEECTTTCEEEEE
T ss_pred             CCCeee--eeeccccceEEeeccccccceee--------eeecccCCceeeee-eCCCcc--c-EEEEEeecCCCEEEEE
Confidence            987544  56779999999998776422111        01111355788887 999843  2 5554  5689999999


Q ss_pred             EccCCCCceEeeecCCcceEEEEEeCCCCeEEEec--CCCcEEEEecCCCeeeEeee-------eeeecCCCceece
Q 021291          237 DIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG--ADQKIVLYNLDHSTYVLFGI-------GFVCDQEGNKFGT  304 (314)
Q Consensus       237 d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s--~dg~i~iw~~~~~~~~~~~~-------~~~~~~~~~~~~~  304 (314)
                      |+++ +.++..+.. ...+.++.|++++..+++++  .|+.|+|||+.+++.+..+.       .++++|+|..+++
T Consensus       307 d~~t-~~~~~~~~~-~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S  381 (420)
T 4gga_A          307 NVCS-GACLSAVDA-HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVAS  381 (420)
T ss_dssp             ETTT-TEEEEEEEC-SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEE
T ss_pred             eCCc-cccceeecc-ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence            9998 788777775 46789999999999887754  79999999999999887643       4567888877665

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=3.5e-31  Score=221.02  Aligned_cols=255  Identities=9%  Similarity=0.070  Sum_probs=179.3

Q ss_pred             CceEEec--CCCCceeEEEEcc-CCCEEEEecCCCeEEEEeCCCCeEEEEEeccC-CcccEEEEEEcccCCCCeEEEeec
Q 021291            9 DPVAVLR--GHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHS-AAHGIVSVATGPSIGLNKVISQGR   84 (314)
Q Consensus         9 ~~~~~l~--~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~   84 (314)
                      +....+.  +|.+.|.+++|+| ++++|++++.||.|++||+.+ +.+..+..+. ....|.+++|+|  ++++|++++.
T Consensus       107 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~  183 (383)
T 3ei3_B          107 NKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSV--SRQMLATGDS  183 (383)
T ss_dssp             TCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEET--TTTEEEEEET
T ss_pred             ccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECC--CCCEEEEECC
Confidence            3444444  7999999999999 789999999999999999986 5555555443 224599999999  9999999999


Q ss_pred             CCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccC----CceeeecCCCCCC----cee
Q 021291           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREV----GETVDTDSLCDSK----DDV  156 (314)
Q Consensus        85 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~----~~~  156 (314)
                      |+.|++||++ ++...  .+..+........+++............+...+|++..    ...... + +|..    ++|
T Consensus       184 d~~i~i~d~~-~~~~~--~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~-~~~~~v~~~~~  258 (383)
T 3ei3_B          184 TGRLLLLGLD-GHEIF--KEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAE-M-PHEKPVNAAYF  258 (383)
T ss_dssp             TSEEEEEETT-SCEEE--EEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEE-E-ECSSCEEEEEE
T ss_pred             CCCEEEEECC-CCEEE--EeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEE-e-cCCCceEEEEE
Confidence            9999999995 33221  22223344444555554433444555566788888876    222222 2 3444    899


Q ss_pred             cc-CCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCC------CceeeeEEEecCCCCCCceEEEEeec
Q 021291          157 PA-EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKG------RGMCMAVQAYLPSKSQGFVNVLAGYE  229 (314)
Q Consensus       157 ~~-~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~------~~~~~~~~~~~p~~~~g~~~l~~g~~  229 (314)
                      +| ++..++  +++.|+.|++||+++++....+..... ....|....      .+....+. |+|+   ++ +  +|+.
T Consensus       259 s~~~~~~l~--~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~-~s~d---g~-~--s~s~  328 (383)
T 3ei3_B          259 NPTDSTKLL--TTDQRNEIRVYSSYDWSKPDQIIIHPH-RQFQHLTPIKATWHPMYDLIVAG-RYPD---DQ-L--LLND  328 (383)
T ss_dssp             CTTTSCEEE--EEESSSEEEEEETTBTTSCSEEEECCB-CCCTTSCCCCCEECSSSSEEEEE-CBCC---TT-T--CTTC
T ss_pred             cCCCCCEEE--EEcCCCcEEEEECCCCccccccccccc-cccccccceEEeccCCCCceEEE-ecCC---cc-c--ccCC
Confidence            99 886544  566799999999999887766652100 000111111      12233344 6665   43 3  7789


Q ss_pred             CCcEEEEEccCCCCceEeeec--CCcceEEEEEeCCCCeEEEecCCCcEEEEecCC
Q 021291          230 DGSILVWDIRNPGIPLTAMKV--HLEPVLCLSIDESCNGGISGGADQKIVLYNLDH  283 (314)
Q Consensus       230 dg~i~vwd~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~  283 (314)
                      |+.|++||+.+ ++++..+.+  |...+..++|+|++.+|++++ ||.|++||+++
T Consensus       329 d~~i~iwd~~~-~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          329 KRTIDIYDANS-GGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             CCCEEEEETTT-CCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             CCeEEEEecCC-CceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence            99999999998 888888887  457788889999999999997 99999999875

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=9.3e-31  Score=248.53  Aligned_cols=260  Identities=12%  Similarity=0.192  Sum_probs=201.8

Q ss_pred             CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v   88 (314)
                      .....+.+|.+.|++++|+|+|++|++|+.||+|++||+.+++.+..+.+|...  |.+++|+|  ++++|++++.|++|
T Consensus       606 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~--v~~~~~s~--~~~~l~s~~~d~~v  681 (1249)
T 3sfz_A          606 LSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDE--VLCCAFSS--DDSYIATCSADKKV  681 (1249)
T ss_dssp             CCSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC--EEEEEECT--TSSEEEEEETTSEE
T ss_pred             cceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCC--EEEEEEec--CCCEEEEEeCCCeE
Confidence            345678899999999999999999999999999999999999999999999855  99999999  99999999999999


Q ss_pred             EEEeCCCCCCCCCCeeeeecceeeEEEeeeeecc-ccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCce
Q 021291           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEP-YANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKY  163 (314)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  163 (314)
                      ++||+.+++...  .+..+........+++.... ........+...+|++....... .+.+|..    ++|+|+++.+
T Consensus       682 ~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~-~~~~h~~~v~~~~~sp~~~~l  758 (1249)
T 3sfz_A          682 KIWDSATGKLVH--TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN-TMFGHTNSVNHCRFSPDDELL  758 (1249)
T ss_dssp             EEEETTTCCEEE--EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEE-EECCCSSCEEEEEECSSTTEE
T ss_pred             EEEECCCCceEE--EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhh-eecCCCCCEEEEEEecCCCEE
Confidence            999999987644  33334444444555443222 23344455678889988776544 3445655    8999999754


Q ss_pred             EEEeecCcCeEEEEecCCCceeeeecccccC--------------CCCCc-----------------------------C
Q 021291          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCG--------------GSPNF-----------------------------S  200 (314)
Q Consensus       164 ~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~--------------~~~~h-----------------------------~  200 (314)
                      +  +++.||.|++||+++++....+......              .....                             .
T Consensus       759 ~--s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~  836 (1249)
T 3sfz_A          759 A--SCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIH  836 (1249)
T ss_dssp             E--EEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEE
T ss_pred             E--EEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEc
Confidence            4  5777999999999888765554311000              00000                             0


Q ss_pred             CCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEe
Q 021291          201 SKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN  280 (314)
Q Consensus       201 ~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~  280 (314)
                      ......+.++. |+|+   +. ++++++.||.|++||+.+ +..+..+.+|...|++++|+|++.+|++++.||.|++|+
T Consensus       837 ~~~~~~v~~~~-~sp~---~~-~l~~~~~dg~v~vwd~~~-~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~  910 (1249)
T 3sfz_A          837 TGHHSTIQYCD-FSPY---DH-LAVIALSQYCVELWNIDS-RLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE  910 (1249)
T ss_dssp             CSSSSCCCEEE-ECSS---TT-EEEEECSSSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             CCCCCceEEEE-EcCC---CC-EEEEEeCCCeEEEEEcCC-CceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            01234566776 9997   44 899999999999999998 888999999999999999999999999999999999999


Q ss_pred             cCC
Q 021291          281 LDH  283 (314)
Q Consensus       281 ~~~  283 (314)
                      +..
T Consensus       911 ~~~  913 (1249)
T 3sfz_A          911 TKK  913 (1249)
T ss_dssp             HHH
T ss_pred             ccc
Confidence            764

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=1.3e-31  Score=212.96  Aligned_cols=207  Identities=9%  Similarity=0.126  Sum_probs=142.7

Q ss_pred             CceeEEEEccC----CCEEEEec--------------------CCCeEEEEeC-CCCeEEEEEeccCCcccEEEEEEcc-
Q 021291           19 ASVTDVCFHQT----KPILFAGT--------------------TGGELRIWDT-VQHRTVSSSWVHSAAHGIVSVATGP-   72 (314)
Q Consensus        19 ~~v~~~~~~~~----~~~l~s~~--------------------~dg~v~iwd~-~~~~~~~~~~~~~~~~~v~~~~~~~-   72 (314)
                      ..|++++|+||    ++++++++                    .|+.|++|++ .+++.+..+.+|...  +..++|++ 
T Consensus       112 ~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~--v~~l~fs~~  189 (356)
T 2w18_A          112 REIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPE--ETILTFAEV  189 (356)
T ss_dssp             EEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCS--SCEEEEEEE
T ss_pred             cceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCc--eeeEEeecc
Confidence            35677777888    77777655                    3888999998 558888888888865  66777776 


Q ss_pred             cCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCC
Q 021291           73 SIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDS  152 (314)
Q Consensus        73 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (314)
                      ..++..|++++.|++|+|||+++++++.    ++..+.....  ....                                
T Consensus       190 ~g~~~~LaSgS~D~TIkIWDl~TGk~l~----tL~g~~~~v~--~v~~--------------------------------  231 (356)
T 2w18_A          190 QGMQEALLGTTIMNNIVIWNLKTGQLLK----KMHIDDSYQA--SVCH--------------------------------  231 (356)
T ss_dssp             ETSTTEEEEEETTSEEEEEETTTCCEEE----EEECCC---C--CCEE--------------------------------
T ss_pred             CCCCceEEEecCCCcEEEEECCCCcEEE----EEcCCCccee--eeEE--------------------------------
Confidence            3356899999999999999999997644    3332111000  0000                                


Q ss_pred             CceeccCCCceE----------EEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCce
Q 021291          153 KDDVPAEGPKYM----------AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFV  222 (314)
Q Consensus       153 ~~~~~~~~~~~~----------~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~  222 (314)
                       ++|+|+|..++          +++|+.|++|++||..+++.+..+...   ...+|..    ...+.. ++     +. 
T Consensus       232 -vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~---~p~Gh~~----~~lsg~-~s-----g~-  296 (356)
T 2w18_A          232 -KAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYC---LPPGQAG----RFLEGD-VK-----DH-  296 (356)
T ss_dssp             -EEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEEC---CCTTCCC----CEEEEE-EE-----TT-
T ss_pred             -EEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEee---ccCCCcc----eeEccc-cC-----CC-
Confidence             34667665442          357889999999999999887655210   0014422    233333 33     33 


Q ss_pred             EEEEeecCCcEEEEEccCCCCceEeeecCCcceE-EEEEeCCCCeEEEecCCCcEEEEec
Q 021291          223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVL-CLSIDESCNGGISGGADQKIVLYNL  281 (314)
Q Consensus       223 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~s~dg~i~iw~~  281 (314)
                      ++++|+.|++|+|||+.+ ++++.++.+|...+. .++|+|+|++|++|+.|++|+|||+
T Consensus       297 ~lASgS~DgTIkIWDl~t-Gk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          297 CAAAILTSGTIAIWDLLL-GQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEEEEETTSCEEEEETTT-CSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EEEEEcCCCcEEEEECCC-CcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            899999999999999998 899999999988665 5899999999999999999999996

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2.1e-31  Score=220.61  Aligned_cols=241  Identities=14%  Similarity=0.160  Sum_probs=176.1

Q ss_pred             CCCceeEEEEccC----CCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEe
Q 021291           17 HRASVTDVCFHQT----KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD   92 (314)
Q Consensus        17 h~~~v~~~~~~~~----~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd   92 (314)
                      |...|++++|+|+    +++|++|+.||.|++||+.+++.+..+.+|...  |.+++|+|. ++++|++++.||.|++||
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~--i~~~~~~~~-~~~~l~s~~~dg~i~iwd  144 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNA--INELKFHPR-DPNLLLSVSKDHALRLWN  144 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSC--EEEEEECSS-CTTEEEEEETTSCEEEEE
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCc--EEEEEECCC-CCCEEEEEeCCCeEEEEE
Confidence            6688999999998    679999999999999999999999999988854  999999984 468999999999999999


Q ss_pred             CCCCCCCCCCee---eeecceeeEEEeeeeeccccccccCCCCcceeeccCCceee------------------------
Q 021291           93 IENGGLSSNPSL---TIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVD------------------------  145 (314)
Q Consensus        93 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------  145 (314)
                      +++++...  .+   ..+........+++... ........+...+|++.......                        
T Consensus       145 ~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (366)
T 3k26_A          145 IQTDTLVA--IFGGVEGHRDEVLSADYDLLGE-KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHF  221 (366)
T ss_dssp             TTTTEEEE--EECSTTSCSSCEEEEEECTTSS-EEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECC
T ss_pred             eecCeEEE--EecccccccCceeEEEECCCCC-EEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeecc
Confidence            99876433  11   12233344444444322 22233345667777776543211                        


Q ss_pred             ---ecCCCCCC----ceeccCCCceEEEeecCcCeEEEEecCCCce--------------eeeecccccCCCCCcCCCCC
Q 021291          146 ---TDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAER--------------CTRLHQNSCGGSPNFSSKGR  204 (314)
Q Consensus       146 ---~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~--------------~~~~~~~~~~~~~~h~~~~~  204 (314)
                         .....|..    ++|+  ++ +++ +++.|+.|++||+++++.              +..+.        +|    .
T Consensus       222 ~~~~~~~~~~~~v~~~~~~--~~-~l~-~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~--------~~----~  285 (366)
T 3k26_A          222 PDFSTRDIHRNYVDCVRWL--GD-LIL-SKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFD--------YS----Q  285 (366)
T ss_dssp             CSEEECSSCSSCCCEEEEE--TT-EEE-EECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEE--------CS----S
T ss_pred             CccccccCCcceEEEEEEc--CC-EEE-EEecCCEEEEEeCCCccccccccccCCcchheecccc--------cc----C
Confidence               11112444    6666  44 343 677799999999987754              44444        44    3


Q ss_pred             ceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCc----eEeeecC--CcceEEEEEeCCCCeEEEecCCCcEEE
Q 021291          205 GMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP----LTAMKVH--LEPVLCLSIDESCNGGISGGADQKIVL  278 (314)
Q Consensus       205 ~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~----~~~~~~h--~~~v~~~~~~~~~~~l~s~s~dg~i~i  278 (314)
                      ..+.++. |+|+.. ++ +|++|+.||.|++||+++ +++    ...+.+|  ...|++++|+|++++|++++.||.|++
T Consensus       286 ~~v~~~~-~s~~~~-~~-~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i  361 (366)
T 3k26_A          286 CDIWYMR-FSMDFW-QK-MLALGNQVGKLYVWDLEV-EDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWR  361 (366)
T ss_dssp             CCSSCCC-CEECTT-SS-EEEEECTTSCEEEEECCS-SSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             CcEEEEE-EcCCCC-Cc-EEEEEecCCcEEEEECCC-CCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEE
Confidence            3566666 888721 34 999999999999999997 543    3467777  789999999999999999999999999


Q ss_pred             EecCC
Q 021291          279 YNLDH  283 (314)
Q Consensus       279 w~~~~  283 (314)
                      ||+.+
T Consensus       362 wd~~~  366 (366)
T 3k26_A          362 WDRLR  366 (366)
T ss_dssp             EEC--
T ss_pred             EEecC
Confidence            99863

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-30  Score=209.09  Aligned_cols=245  Identities=16%  Similarity=0.228  Sum_probs=186.3

Q ss_pred             CCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCC---eEEEEEeccCCcccEEEEEEcccCCCCeEEEeec
Q 021291            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH---RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (314)
Q Consensus         8 ~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (314)
                      .+....+.+|...|.+++|+|++++|++|+.||.|++|++...   +.+..+..|...  |.+++|.+    +.|++++.
T Consensus        49 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~~----~~l~~~~~  122 (313)
T 3odt_A           49 QWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGN--VCSLSFQD----GVVISGSW  122 (313)
T ss_dssp             SEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSC--EEEEEEET----TEEEEEET
T ss_pred             CEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccC--EEEEEecC----CEEEEEeC
Confidence            4567788899999999999999999999999999999998754   567778888844  99999944    79999999


Q ss_pred             CCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCC-CCC----ceeccC
Q 021291           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLC-DSK----DDVPAE  159 (314)
Q Consensus        85 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~  159 (314)
                      ||.|++||  .++...  .+..+........+.+............+...+|+.  . .....+.. |..    ++|+|+
T Consensus       123 d~~i~~~d--~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~--~-~~~~~~~~~~~~~i~~~~~~~~  195 (313)
T 3odt_A          123 DKTAKVWK--EGSLVY--NLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN--D-KVIKTFSGIHNDVVRHLAVVDD  195 (313)
T ss_dssp             TSEEEEEE--TTEEEE--EEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET--T-EEEEEECSSCSSCEEEEEEEET
T ss_pred             CCCEEEEc--CCcEEE--ecccCCCceeEEEEccCCCCEEEEEECCCCEEEEec--C-ceEEEEeccCcccEEEEEEcCC
Confidence            99999999  222211  222233333333333322333344444556666762  2 22222332 444    889999


Q ss_pred             CCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEcc
Q 021291          160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR  239 (314)
Q Consensus       160 ~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~  239 (314)
                      +.  ++ +++.|+.|++||+++++.+..+.        +|    ...+.++. |+|+   +  .+++++.||.|++||++
T Consensus       196 ~~--~~-~~~~dg~i~i~d~~~~~~~~~~~--------~~----~~~i~~~~-~~~~---~--~l~~~~~dg~v~iwd~~  254 (313)
T 3odt_A          196 GH--FI-SCSNDGLIKLVDMHTGDVLRTYE--------GH----ESFVYCIK-LLPN---G--DIVSCGEDRTVRIWSKE  254 (313)
T ss_dssp             TE--EE-EEETTSEEEEEETTTCCEEEEEE--------CC----SSCEEEEE-ECTT---S--CEEEEETTSEEEEECTT
T ss_pred             Ce--EE-EccCCCeEEEEECCchhhhhhhh--------cC----CceEEEEE-EecC---C--CEEEEecCCEEEEEECC
Confidence            86  33 56679999999999999988887        56    45788887 9997   4  48899999999999999


Q ss_pred             CCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeE
Q 021291          240 NPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVL  288 (314)
Q Consensus       240 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~  288 (314)
                      + ++++..+..|...|.+++|+|+++ +++++.||.|++||+++++...
T Consensus       255 ~-~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~  301 (313)
T 3odt_A          255 N-GSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWAS  301 (313)
T ss_dssp             T-CCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC
T ss_pred             C-CceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceee
Confidence            8 888999999999999999999998 6679999999999999876543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1e-30  Score=221.76  Aligned_cols=247  Identities=15%  Similarity=0.291  Sum_probs=183.8

Q ss_pred             CCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC
Q 021291            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (314)
Q Consensus         7 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg   86 (314)
                      .++.+..+.+|.+.|.+++|  ++++|++|+.||.|++||+.+++.+..+..|...  |.+++|++    +.|++|+.||
T Consensus       162 ~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~--v~~l~~~~----~~l~s~s~dg  233 (435)
T 1p22_A          162 TLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEA--VLHLRFNN----GMMVTCSKDR  233 (435)
T ss_dssp             SCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSC--EEEEECCT----TEEEEEETTS
T ss_pred             CCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCc--EEEEEEcC----CEEEEeeCCC
Confidence            45778899999999999999  7889999999999999999999999999998854  99999976    6999999999


Q ss_pred             eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC--ceeccCCCceE
Q 021291           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYM  164 (314)
Q Consensus        87 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  164 (314)
                      .|++||++++..... ......+......+.. ...........+...+|++........ +.+|..  .++..+++ .+
T Consensus       234 ~i~vwd~~~~~~~~~-~~~~~~~~~~v~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~-~l  309 (435)
T 1p22_A          234 SIAVWDMASPTDITL-RRVLVGHRAAVNVVDF-DDKYIVSASGDRTIKVWNTSTCEFVRT-LNGHKRGIACLQYRDR-LV  309 (435)
T ss_dssp             CEEEEECSSSSCCEE-EEEECCCSSCEEEEEE-ETTEEEEEETTSEEEEEETTTCCEEEE-EECCSSCEEEEEEETT-EE
T ss_pred             cEEEEeCCCCCCcee-eeEecCCCCcEEEEEe-CCCEEEEEeCCCeEEEEECCcCcEEEE-EcCCCCcEEEEEeCCC-EE
Confidence            999999998764320 1122223223333333 222333444556778888877655443 345555  44444554 34


Q ss_pred             EEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCC-
Q 021291          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI-  243 (314)
Q Consensus       165 ~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~-  243 (314)
                      + +|+.|+.|++||+++++.+..+.        +|    ...+.++. |.     +. +|++|+.||.|++||++. +. 
T Consensus       310 ~-~g~~dg~i~iwd~~~~~~~~~~~--------~h----~~~v~~~~-~~-----~~-~l~sg~~dg~i~vwd~~~-~~~  368 (435)
T 1p22_A          310 V-SGSSDNTIRLWDIECGACLRVLE--------GH----EELVRCIR-FD-----NK-RIVSGAYDGKIKVWDLVA-ALD  368 (435)
T ss_dssp             E-EEETTSCEEEEETTTCCEEEEEC--------CC----SSCEEEEE-CC-----SS-EEEEEETTSCEEEEEHHH-HTS
T ss_pred             E-EEeCCCeEEEEECCCCCEEEEEe--------CC----cCcEEEEE-ec-----CC-EEEEEeCCCcEEEEECCC-CCC
Confidence            3 57779999999999999998887        66    44677776 74     33 899999999999999975 33 


Q ss_pred             --------ceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeE
Q 021291          244 --------PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVL  288 (314)
Q Consensus       244 --------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~  288 (314)
                              ++..+.+|...|++++|  ++.+|++++.||.|++||+.++....
T Consensus       369 ~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~  419 (435)
T 1p22_A          369 PRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQ  419 (435)
T ss_dssp             TTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC--------
T ss_pred             ccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcc
Confidence                    67888999999999999  56689999999999999998876544

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=3.6e-30  Score=213.27  Aligned_cols=247  Identities=14%  Similarity=0.151  Sum_probs=181.6

Q ss_pred             eEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEE--cccCCCCeEEEeecCCeE
Q 021291           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT--GPSIGLNKVISQGRDGTV   88 (314)
Q Consensus        11 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~l~s~~~dg~v   88 (314)
                      ...+.+|.+.|++++|+|++++|++++.||.|++||+++++.+. +..|.  ..|.+++|  +|  ++.+|++++.||.|
T Consensus        79 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~--~~v~~~~~~~~~--~~~~l~~~~~dg~i  153 (368)
T 3mmy_A           79 PKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHD--APVKTIHWIKAP--NYSCVMTGSWDKTL  153 (368)
T ss_dssp             EEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECS--SCEEEEEEEECS--SCEEEEEEETTSEE
T ss_pred             EEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-ecccc--CceEEEEEEeCC--CCCEEEEccCCCcE
Confidence            37889999999999999999999999999999999999988776 45677  44999999  66  88999999999999


Q ss_pred             EEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCC---CCC--ceeccCCCc-
Q 021291           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLC---DSK--DDVPAEGPK-  162 (314)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~-  162 (314)
                      ++||+++++...    .+..... ...+... ..............+|++............   +..  +++.++... 
T Consensus       154 ~vwd~~~~~~~~----~~~~~~~-~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (368)
T 3mmy_A          154 KFWDTRSSNPMM----VLQLPER-CYCADVI-YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNK  227 (368)
T ss_dssp             EEECSSCSSCSE----EEECSSC-EEEEEEE-TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSC
T ss_pred             EEEECCCCcEEE----EEecCCC-ceEEEec-CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCC
Confidence            999999887544    3332221 1112222 223334444556677777665443333222   222  445444432 


Q ss_pred             -eEEEeecCcCeEEEEecCCC---ceeeeecccccCCCCCcCCCC--------CceeeeEEEecCCCCCCceEEEEeecC
Q 021291          163 -YMAVAGEQLSEVEIWDLNTA---ERCTRLHQNSCGGSPNFSSKG--------RGMCMAVQAYLPSKSQGFVNVLAGYED  230 (314)
Q Consensus       163 -~~~~~g~~d~~i~vwd~~~~---~~~~~~~~~~~~~~~~h~~~~--------~~~~~~~~~~~p~~~~g~~~l~~g~~d  230 (314)
                       ..+++++.|+.|++||++..   .....+.        +|....        ...+.++. |+|+   ++ +|++|+.|
T Consensus       228 ~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~v~~~~-~sp~---~~-~l~s~~~d  294 (368)
T 3mmy_A          228 PTGFALGSIEGRVAIHYINPPNPAKDNFTFK--------CHRSNGTNTSAPQDIYAVNGIA-FHPV---HG-TLATVGSD  294 (368)
T ss_dssp             EEEEEEEETTSEEEEEESSCSCHHHHSEEEE--------CSEEC----CCCEEECCEEEEE-ECTT---TC-CEEEEETT
T ss_pred             CCeEEEecCCCcEEEEecCCCCccccceeee--------eeecccccccccccccceEEEE-EecC---CC-EEEEEccC
Confidence             12336777999999999987   4455555        442211        11588887 9998   54 89999999


Q ss_pred             CcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecC
Q 021291          231 GSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD  282 (314)
Q Consensus       231 g~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~  282 (314)
                      |.|++||+++ ++++..+.+|..+|++++|+|++.+|++++.|+..+.|++-
T Consensus       295 g~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~  345 (368)
T 3mmy_A          295 GRFSFWDKDA-RTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFY  345 (368)
T ss_dssp             SCEEEEETTT-TEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred             CeEEEEECCC-CcEEEEecCCCCCceEEEECCCCCeEEEEeccccccccccc
Confidence            9999999998 88899999999999999999999999999998866655543

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=2.2e-30  Score=228.87  Aligned_cols=254  Identities=13%  Similarity=0.071  Sum_probs=191.6

Q ss_pred             CCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCC----eEEEEEeccCCccc-EEEEEEcccCCCCeEEEeecCCeEEE
Q 021291           16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH----RTVSSSWVHSAAHG-IVSVATGPSIGLNKVISQGRDGTVKC   90 (314)
Q Consensus        16 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~----~~~~~~~~~~~~~~-v~~~~~~~~~~~~~l~s~~~dg~v~i   90 (314)
                      .|.+.|.+++|+|++++|++++ ++.|+|||+.++    +....+.+|.  .. |.+++|+|..++++|++++.||+|++
T Consensus        16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~--~~~v~~~~~sp~~~~~~l~s~~~dg~v~v   92 (615)
T 1pgu_A           16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHG--SSVVTTVKFSPIKGSQYLCSGDESGKVIV   92 (615)
T ss_dssp             CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTT--TSCEEEEEECSSTTCCEEEEEETTSEEEE
T ss_pred             CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCC--CceEEEEEECcCCCCCEEEEecCCCEEEE
Confidence            5899999999999999999998 789999999998    8889998887  77 99999998445689999999999999


Q ss_pred             EeCCCC------CCCCCCeeeeecceeeEEEeeeeeccccccccCCC-CcceeeccCCceeeecCCCCCC----ceeccC
Q 021291           91 WDIENG------GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANE-PKDCYEREVGETVDTDSLCDSK----DDVPAE  159 (314)
Q Consensus        91 wd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  159 (314)
                      ||+.++      +......+..+........+++............. ...++..+. ......+.+|..    ++|+|+
T Consensus        93 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~-~~~~~~~~~~~~~v~~~~~~~~  171 (615)
T 1pgu_A           93 WGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS-GNSLGEVSGHSQRINACHLKQS  171 (615)
T ss_dssp             EEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT-CCEEEECCSCSSCEEEEEECSS
T ss_pred             EeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEEC-CCcceeeecCCccEEEEEECCC
Confidence            999754      11110012222333444444443322222221111 123333333 334445566766    899999


Q ss_pred             CCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCC-CCCCceEEEEeecCCcEEEEEc
Q 021291          160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPS-KSQGFVNVLAGYEDGSILVWDI  238 (314)
Q Consensus       160 ~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~-~~~g~~~l~~g~~dg~i~vwd~  238 (314)
                      ++.+++ +++.|+.|++||+++++.+..+.        +|.. ....+.++. |+|+ +.    +|++++.||.|++||+
T Consensus       172 ~~~~l~-~~~~d~~v~vwd~~~~~~~~~~~--------~~~~-~~~~v~~~~-~~~~~~~----~l~~~~~dg~i~vwd~  236 (615)
T 1pgu_A          172 RPMRSM-TVGDDGSVVFYQGPPFKFSASDR--------THHK-QGSFVRDVE-FSPDSGE----FVITVGSDRKISCFDG  236 (615)
T ss_dssp             SSCEEE-EEETTTEEEEEETTTBEEEEEEC--------SSSC-TTCCEEEEE-ECSTTCC----EEEEEETTCCEEEEET
T ss_pred             CCcEEE-EEeCCCcEEEEeCCCcceeeeec--------ccCC-CCceEEEEE-ECCCCCC----EEEEEeCCCeEEEEEC
Confidence            986665 56679999999999999888887        5532 111688887 9997 43    8999999999999999


Q ss_pred             cCCCCceEee-e---cCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEee
Q 021291          239 RNPGIPLTAM-K---VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFG  290 (314)
Q Consensus       239 ~~~~~~~~~~-~---~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~  290 (314)
                      ++ ++++..+ .   .|...|.+++|+ ++.+|++++.||.|++||+++++.+...
T Consensus       237 ~~-~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~  290 (615)
T 1pgu_A          237 KS-GEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKW  290 (615)
T ss_dssp             TT-CCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             CC-CCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEE
Confidence            98 7888888 6   899999999999 9999999999999999999998877654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=1.6e-31  Score=223.63  Aligned_cols=231  Identities=15%  Similarity=0.094  Sum_probs=151.2

Q ss_pred             eEEecCCCCceeEEEEcc--------CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCC-CeEEE
Q 021291           11 VAVLRGHRASVTDVCFHQ--------TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGL-NKVIS   81 (314)
Q Consensus        11 ~~~l~~h~~~v~~~~~~~--------~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s   81 (314)
                      +..+.||.+.|++++|+|        |+++||+|+.|++|+|||+.++.++..+..|..  .|.+++|+|  ++ .+|++
T Consensus       129 ~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~--~v~~v~~~p--~~~~~l~~  204 (393)
T 4gq1_A          129 LGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSS--PGISVQFRP--SNPNQLIV  204 (393)
T ss_dssp             ECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSS--CEEEEEEET--TEEEEEEE
T ss_pred             ecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCC--CcEEEEECC--CCCceEEe
Confidence            445789999999999998        789999999999999999998888888888884  499999999  65 47999


Q ss_pred             eecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceec
Q 021291           82 QGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVP  157 (314)
Q Consensus        82 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  157 (314)
                      ++.|++|++||+++++......  ..........+.........                   .....+|..    +.|+
T Consensus       205 ~~~d~~v~~wd~~t~~~~~~~~--~~~~~~~~~~~s~~~~~~~~-------------------~~~~~~~~~~v~~v~~~  263 (393)
T 4gq1_A          205 GERNGNIRIFDWTLNLSAEENS--QTELVKNPWLLTLNTLPLVN-------------------TCHSSGIASSLANVRWI  263 (393)
T ss_dssp             EETTSEEEEEETTCCC------------CSCCCSEEEESGGGC-------------------------CCSSSCSEEEEE
T ss_pred             cCCCCEEEEEECCCCccccccc--ccCCcccceEEeccccccee-------------------eeecccccccceeeeee
Confidence            9999999999999886543111  11111111111111111000                   001112222    5555


Q ss_pred             -cCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCC--------------CceeeeEEEecCCCCCCce
Q 021291          158 -AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKG--------------RGMCMAVQAYLPSKSQGFV  222 (314)
Q Consensus       158 -~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~--------------~~~~~~~~~~~p~~~~g~~  222 (314)
                       ++++.++  +++.|+++++||+..++....+.        .|....              ........ |+|..  +..
T Consensus       264 ~~dg~~l~--s~s~d~~i~vwd~~~~~~~~~l~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~  330 (393)
T 4gq1_A          264 GSDGSGIL--AMCKSGAWLRWNLFANNDYNEIS--------DSTMKLGPKNLLPNVQGISLFPSLLGAC-PHPRY--MDY  330 (393)
T ss_dssp             TTTTCEEE--EECTTSEEEEEEC---------------------------CCSCSEEEECSSCCSSCCE-ECSSC--TTE
T ss_pred             cCCCCEEE--EEeCCCCEEEEECccCCCCceEe--------eecCccccEEEccccccccccCcceeEE-EccCC--CCE
Confidence             7776544  67789999999998877655544        121110              11122233 55542  333


Q ss_pred             EEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEec
Q 021291          223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL  281 (314)
Q Consensus       223 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~  281 (314)
                      ++++|+.||.|++||+.+ ++++..+.+|..+|++|+|+|+|++||+++.|| +.+|.+
T Consensus       331 ~~~sgs~Dg~V~lwd~~~-~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          331 FATAHSQHGLIQLINTYE-KDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             EEEEETTTTEEEEEETTC-TTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred             EEEEECCCCEEEEEECCC-CcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence            788899999999999998 777888888999999999999999999998777 555554

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-31  Score=228.77  Aligned_cols=248  Identities=13%  Similarity=0.046  Sum_probs=176.3

Q ss_pred             EEecCCCCceeEEEEccC------CCEEEEecCCCeEEEEeCCCCeE-----------EEEEeccCCcccEEEEEEcccC
Q 021291           12 AVLRGHRASVTDVCFHQT------KPILFAGTTGGELRIWDTVQHRT-----------VSSSWVHSAAHGIVSVATGPSI   74 (314)
Q Consensus        12 ~~l~~h~~~v~~~~~~~~------~~~l~s~~~dg~v~iwd~~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~   74 (314)
                      .++.+|.+.|.+++|+|+      +.+||+++.||+|+|||+.+++.           ...+.+|.  ..|.+++|++  
T Consensus       201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~--~~v~sv~~s~--  276 (524)
T 2j04_B          201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLAD--SLITTFDFLS--  276 (524)
T ss_dssp             EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTT--TCEEEEEESS--
T ss_pred             EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCC--CCEEEEEecC--
Confidence            457788999999999996      57999999999999999986632           23567777  4599999998  


Q ss_pred             CCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEE--eeeeeccccccccCCCCcceeeccCCcee---eecCC
Q 021291           75 GLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCK--LSLVKEPYANAKQANEPKDCYEREVGETV---DTDSL  149 (314)
Q Consensus        75 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  149 (314)
                      + ..|++|+.||+|++||++++.... ..+..+...+....  ++..+..........+...+|+++.....   .....
T Consensus       277 ~-~~lasgs~DgtV~lWD~~~~~~~~-~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~  354 (524)
T 2j04_B          277 P-TTVVCGFKNGFVAEFDLTDPEVPS-FYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFR  354 (524)
T ss_dssp             S-SEEEEEETTSEEEEEETTBCSSCS-EEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECS
T ss_pred             C-CeEEEEeCCCEEEEEECCCCCCce-EEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccc
Confidence            6 589999999999999999764321 01233333333321  11111123344555677888888765422   11122


Q ss_pred             C-C-CCceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEe
Q 021291          150 C-D-SKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG  227 (314)
Q Consensus       150 ~-~-~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g  227 (314)
                      . . ..++|+|+++.++  +++.|++|++||++++.++..+.        +|    ...+.+++ |+|+   |+ +|++|
T Consensus       355 ~~~v~~v~fsp~~~~l~--s~~~d~tv~lwd~~~~~~~~~l~--------gH----~~~V~sva-~Sp~---g~-~l~Sg  415 (524)
T 2j04_B          355 GSNLVPVVYCPQIYSYI--YSDGASSLRAVPSRAAFAVHPLV--------SR----ETTITAIG-VSRL---HP-MVLAG  415 (524)
T ss_dssp             CCSCCCEEEETTTTEEE--EECSSSEEEEEETTCTTCCEEEE--------EC----SSCEEEEE-CCSS---CC-BCEEE
T ss_pred             cCcccceEeCCCcCeEE--EeCCCCcEEEEECcccccceeee--------cC----CCceEEEE-eCCC---CC-eEEEE
Confidence            1 1 2289999987543  56668999999999998877777        66    45788998 9998   55 89999


Q ss_pred             ecCCcEEEEEccCC-------------------------------------------CCceEeeecCCcceEEEEEeCCC
Q 021291          228 YEDGSILVWDIRNP-------------------------------------------GIPLTAMKVHLEPVLCLSIDESC  264 (314)
Q Consensus       228 ~~dg~i~vwd~~~~-------------------------------------------~~~~~~~~~h~~~v~~~~~~~~~  264 (314)
                      +.||+|++||....                                           +..+..+.+|..+|++|+|+|++
T Consensus       416 s~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~  495 (524)
T 2j04_B          416 SADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETS  495 (524)
T ss_dssp             ETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCST
T ss_pred             ECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCC
Confidence            99999999985310                                           11223455788899999999995


Q ss_pred             C---eEEEecCCCcEEEEecCCC
Q 021291          265 N---GGISGGADQKIVLYNLDHS  284 (314)
Q Consensus       265 ~---~l~s~s~dg~i~iw~~~~~  284 (314)
                      .   .|++|+.||.|+||+++..
T Consensus       496 ~~~~~lAsg~~~g~vrlw~l~~~  518 (524)
T 2j04_B          496 AGGKCYAFSNSAGLLTLEYLSLE  518 (524)
T ss_dssp             TTTTEEEEECTTSEEEEEECSCC
T ss_pred             CccHHHHhhccCceEEEEEcccc
Confidence            4   8999999999999998754

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=6.7e-31  Score=221.85  Aligned_cols=213  Identities=15%  Similarity=0.191  Sum_probs=164.4

Q ss_pred             ecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeC
Q 021291           14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI   93 (314)
Q Consensus        14 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~   93 (314)
                      +.+| ..+....|++++++|++|+.||.|++||+.+++....+..|...  |.+++|+|  ++++|++++.|++|++||+
T Consensus        94 ~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~--v~~~~~~~--~~~~l~s~s~d~~i~iwd~  168 (420)
T 3vl1_A           94 LKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSE--ITKLKFFP--SGEALISSSQDMQLKIWSV  168 (420)
T ss_dssp             SCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSC--EEEEEECT--TSSEEEEEETTSEEEEEET
T ss_pred             EecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCc--cEEEEECC--CCCEEEEEeCCCeEEEEeC
Confidence            3344 44555578999999999999999999999999988888888854  99999999  9999999999999999999


Q ss_pred             CCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCe
Q 021291           94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSE  173 (314)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~  173 (314)
                      ++++...    .+..+......                                      ++|+|+++.++  +++.|+.
T Consensus       169 ~~~~~~~----~~~~h~~~v~~--------------------------------------~~~~~~~~~l~--s~~~d~~  204 (420)
T 3vl1_A          169 KDGSNPR----TLIGHRATVTD--------------------------------------IAIIDRGRNVL--SASLDGT  204 (420)
T ss_dssp             TTCCCCE----EEECCSSCEEE--------------------------------------EEEETTTTEEE--EEETTSC
T ss_pred             CCCcCce----EEcCCCCcEEE--------------------------------------EEEcCCCCEEE--EEcCCCc
Confidence            9886543    22222111110                                      56889987554  5777999


Q ss_pred             EEEEecCCCceeeeecccccCCCCCcCCC-----------------CCceeeeEEEecCCCCCCceEEEEeecCCcEEEE
Q 021291          174 VEIWDLNTAERCTRLHQNSCGGSPNFSSK-----------------GRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW  236 (314)
Q Consensus       174 i~vwd~~~~~~~~~~~~~~~~~~~~h~~~-----------------~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vw  236 (314)
                      |++||+++++.+..+....     .|...                 ....+.++. |+|+   ++ +|++|+.||.|++|
T Consensus       205 v~iwd~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~---~~-~l~~~~~dg~i~i~  274 (420)
T 3vl1_A          205 IRLWECGTGTTIHTFNRKE-----NPHDGVNSIALFVGTDRQLHEISTSKKNNLE-FGTY---GK-YVIAGHVSGVITVH  274 (420)
T ss_dssp             EEEEETTTTEEEEEECBTT-----BTTCCEEEEEEEECCCSSCGGGCCCCCCTTC-SSCT---TE-EEEEEETTSCEEEE
T ss_pred             EEEeECCCCceeEEeecCC-----CCCCCccEEEEecCCcceeeecccCcccceE-EcCC---CC-EEEEEcCCCeEEEE
Confidence            9999999999888876210     11000                 012334444 6776   55 89999999999999


Q ss_pred             EccCCCCceEee-ecCCcceEEEEEeCCCC-eEEEecCCCcEEEEecCCCee
Q 021291          237 DIRNPGIPLTAM-KVHLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHSTY  286 (314)
Q Consensus       237 d~~~~~~~~~~~-~~h~~~v~~~~~~~~~~-~l~s~s~dg~i~iw~~~~~~~  286 (314)
                      |+++ ++.+..+ ..|...|++++|+|++. +|++|+.||.|++||+++++.
T Consensus       275 d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~  325 (420)
T 3vl1_A          275 NVFS-KEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC  325 (420)
T ss_dssp             ETTT-CCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS
T ss_pred             ECCC-CceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC
Confidence            9998 5555444 46889999999999998 999999999999999998754

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.98  E-value=4.2e-30  Score=218.06  Aligned_cols=239  Identities=17%  Similarity=0.286  Sum_probs=185.9

Q ss_pred             ceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEE
Q 021291           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (314)
Q Consensus        10 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~   89 (314)
                      .+....+|...|.+++|  ++++|++|+.||.|++||+.+++.+..+.+|...  |.+++|.    ++.|++|+.||+|+
T Consensus       125 ~~~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~--v~~l~~~----~~~l~sg~~dg~i~  196 (435)
T 1p22_A          125 RIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGS--VLCLQYD----ERVIITGSSDSTVR  196 (435)
T ss_dssp             CEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSC--EEEEECC----SSEEEEEETTSCEE
T ss_pred             EEecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCc--EEEEEEC----CCEEEEEcCCCeEE
Confidence            34445567888999988  7889999999999999999999999999999854  9999983    48999999999999


Q ss_pred             EEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCcee--eecCCCCCC--ceeccCCCceEE
Q 021291           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETV--DTDSLCDSK--DDVPAEGPKYMA  165 (314)
Q Consensus        90 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~  165 (314)
                      +||+.+++...    .+..+......+... ..........+...+|++......  ...+.+|..  .++..+++.++ 
T Consensus       197 vwd~~~~~~~~----~~~~h~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-  270 (435)
T 1p22_A          197 VWDVNTGEMLN----TLIHHCEAVLHLRFN-NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIV-  270 (435)
T ss_dssp             EEESSSCCEEE----EECCCCSCEEEEECC-TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEE-
T ss_pred             EEECCCCcEEE----EEcCCCCcEEEEEEc-CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEE-
Confidence            99999886543    333333323333322 223344455677788888766533  245566666  44445665443 


Q ss_pred             EeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCce
Q 021291          166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL  245 (314)
Q Consensus       166 ~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~  245 (314)
                       +|+.|+.|++||+++++.+..+.        +|    ...+.++. |++.      ++++|+.||.|++||+++ ++++
T Consensus       271 -s~~~dg~i~vwd~~~~~~~~~~~--------~~----~~~v~~~~-~~~~------~l~~g~~dg~i~iwd~~~-~~~~  329 (435)
T 1p22_A          271 -SASGDRTIKVWNTSTCEFVRTLN--------GH----KRGIACLQ-YRDR------LVVSGSSDNTIRLWDIEC-GACL  329 (435)
T ss_dssp             -EEETTSEEEEEETTTCCEEEEEE--------CC----SSCEEEEE-EETT------EEEEEETTSCEEEEETTT-CCEE
T ss_pred             -EEeCCCeEEEEECCcCcEEEEEc--------CC----CCcEEEEE-eCCC------EEEEEeCCCeEEEEECCC-CCEE
Confidence             56679999999999999998887        66    34667776 7543      899999999999999998 8899


Q ss_pred             EeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCe
Q 021291          246 TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST  285 (314)
Q Consensus       246 ~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~  285 (314)
                      ..+.+|...|.+++|  ++.+|++|+.||.|++||+.+++
T Consensus       330 ~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~  367 (435)
T 1p22_A          330 RVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAAL  367 (435)
T ss_dssp             EEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHT
T ss_pred             EEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCC
Confidence            999999999999999  56699999999999999997665

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.98  E-value=1.9e-30  Score=237.28  Aligned_cols=213  Identities=14%  Similarity=0.109  Sum_probs=165.2

Q ss_pred             ecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeC
Q 021291           14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI   93 (314)
Q Consensus        14 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~   93 (314)
                      ..||.+.|++++|+|++++||+|+.||+|+||+..+.+....+. |.  ..|.+++|+|  + ++|++++.|++|++||+
T Consensus        13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~--~~V~~l~fsp--g-~~L~S~s~D~~v~lWd~   86 (902)
T 2oaj_A           13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DR--SAIKEMRFVK--G-IYLVVINAKDTVYVLSL   86 (902)
T ss_dssp             EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS-SC--CCEEEEEEET--T-TEEEEEETTCEEEEEET
T ss_pred             ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-CC--CCEEEEEEcC--C-CEEEEEECcCeEEEEEC
Confidence            45899999999999999999999999999999998877665543 44  5599999999  4 69999999999999999


Q ss_pred             CCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCe
Q 021291           94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSE  173 (314)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~  173 (314)
                      +++++..    .+.......+                                       ++|+|+++.++  +|+.||.
T Consensus        87 ~~~~~~~----~~~~~~~V~~---------------------------------------v~~sp~g~~l~--sgs~dg~  121 (902)
T 2oaj_A           87 YSQKVLT----TVFVPGKITS---------------------------------------IDTDASLDWML--IGLQNGS  121 (902)
T ss_dssp             TTCSEEE----EEECSSCEEE---------------------------------------EECCTTCSEEE--EEETTSC
T ss_pred             CCCcEEE----EEcCCCCEEE---------------------------------------EEECCCCCEEE--EEcCCCc
Confidence            9876432    2211111111                                       56889987654  5777999


Q ss_pred             EEEEecCCCceeeeeccccc----CCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeee
Q 021291          174 VEIWDLNTAERCTRLHQNSC----GGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK  249 (314)
Q Consensus       174 i~vwd~~~~~~~~~~~~~~~----~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~  249 (314)
                      |++||+++++.. .+..+..    ....+|    .+.+.+++ |+|++  +. .+++|+.||.| +||+++ ++++..+.
T Consensus       122 V~lwd~~~~~~~-~~~i~~~~~~~~~~~~h----~~~V~sl~-~sp~~--~~-~l~~g~~dg~v-lWd~~~-~~~~~~~~  190 (902)
T 2oaj_A          122 MIVYDIDRDQLS-SFKLDNLQKSSFFPAAR----LSPIVSIQ-WNPRD--IG-TVLISYEYVTL-TYSLVE-NEIKQSFI  190 (902)
T ss_dssp             EEEEETTTTEEE-EEEECCHHHHHTCSSSC----CCCCCEEE-EETTE--EE-EEEEECSSCEE-EEETTT-TEEEEEEC
T ss_pred             EEEEECCCCccc-cceeccccccccccccC----CCCeEEEE-EccCC--CC-EEEEEeCCCcE-EEECCC-CceEEEEe
Confidence            999999987753 1110000    011145    45788887 99962  22 89999999999 999998 77777776


Q ss_pred             cC------------------CcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeE
Q 021291          250 VH------------------LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVL  288 (314)
Q Consensus       250 ~h------------------~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~  288 (314)
                      .|                  ...|++++|+|+|.+|++++.||.|++||+++++.+.
T Consensus       191 ~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~  247 (902)
T 2oaj_A          191 YELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIM  247 (902)
T ss_dssp             CCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEE
T ss_pred             cccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEE
Confidence            65                  5789999999999999999999999999999887654

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.98  E-value=2.8e-31  Score=221.04  Aligned_cols=209  Identities=14%  Similarity=0.058  Sum_probs=154.4

Q ss_pred             CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCe---EEEEEeccCCcccEEEEEEcccCCCCeEEEeecC
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR---TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD   85 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (314)
                      +++..+.+|.+.|.+++|+|++++|++++.||.|++||+.+++   ....+..|..  .|.+++|+|  ++++|++++.|
T Consensus        46 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~--~v~~~~~~~--~~~~l~~~~~d  121 (377)
T 3dwl_C           46 KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNR--AATFVRWSP--NEDKFAVGSGA  121 (377)
T ss_dssp             EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSS--CEEEEECCT--TSSCCEEEESS
T ss_pred             EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCC--ceEEEEECC--CCCEEEEEecC
Confidence            5677888999999999999999999999999999999999876   5666777874  499999999  99999999999


Q ss_pred             CeEEEEeCCCCCCCCCCeeeeec-ceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceE
Q 021291           86 GTVKCWDIENGGLSSNPSLTIKT-NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM  164 (314)
Q Consensus        86 g~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (314)
                      +.|++||+++++... ....+.. +......                                      ++|+|+++.++
T Consensus       122 ~~i~iwd~~~~~~~~-~~~~~~~~h~~~v~~--------------------------------------~~~~~~~~~l~  162 (377)
T 3dwl_C          122 RVISVCYFEQENDWW-VSKHLKRPLRSTILS--------------------------------------LDWHPNNVLLA  162 (377)
T ss_dssp             SCEEECCC-----CC-CCEEECSSCCSCEEE--------------------------------------EEECTTSSEEE
T ss_pred             CeEEEEEECCcccce-eeeEeecccCCCeEE--------------------------------------EEEcCCCCEEE
Confidence            999999999875311 0111111 1110000                                      56889886443


Q ss_pred             EEeecCcCeEEEEecCCCc------------------eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEE
Q 021291          165 AVAGEQLSEVEIWDLNTAE------------------RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA  226 (314)
Q Consensus       165 ~~~g~~d~~i~vwd~~~~~------------------~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~  226 (314)
                        +++.|+.|++||++...                  .+..+         +    ....+.++. |+|+   ++ +|++
T Consensus       163 --~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~----~~~~v~~~~-~sp~---~~-~l~~  222 (377)
T 3dwl_C          163 --AGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY---------P----SGGWVHAVG-FSPS---GN-ALAY  222 (377)
T ss_dssp             --EEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC---------C----CSSSEEEEE-ECTT---SS-CEEE
T ss_pred             --EEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc---------c----CCceEEEEE-ECCC---CC-EEEE
Confidence              57779999999996432                  22111         2    355788888 9998   55 8999


Q ss_pred             eecCCcEEEEEccCCCCc----eEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecC
Q 021291          227 GYEDGSILVWDIRNPGIP----LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD  282 (314)
Q Consensus       227 g~~dg~i~vwd~~~~~~~----~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~  282 (314)
                      ++.||.|++||+++ ++.    +..+.+|..+|.+++|+|++++|++++.|+.+ +|+..
T Consensus       223 ~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          223 AGHDSSVTIAYPSA-PEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             EETTTEEC-CEECS-TTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred             EeCCCcEEEEECCC-CCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence            99999999999998 555    78889999999999999999999999877655 66665

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.98  E-value=1.9e-29  Score=239.55  Aligned_cols=257  Identities=16%  Similarity=0.242  Sum_probs=186.8

Q ss_pred             CCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC
Q 021291            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (314)
Q Consensus         7 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg   86 (314)
                      .++.+.++.+|.+.|.+++|+|++++|++|+.||.|+|||+.+++.+..+.+|...  |.+++|+|..++..+++++.|+
T Consensus       646 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~l~sg~~d~  723 (1249)
T 3sfz_A          646 TGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQ--VNCCHFTNKSNHLLLATGSNDF  723 (1249)
T ss_dssp             TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC--EEEEEECSSSSCCEEEEEETTS
T ss_pred             CCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCc--EEEEEEecCCCceEEEEEeCCC
Confidence            45778899999999999999999999999999999999999999999999999855  9999999943445899999999


Q ss_pred             eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCc------------------------
Q 021291           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE------------------------  142 (314)
Q Consensus        87 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------  142 (314)
                      .|++||++++++..  .+..+........+++... ........+...+|++....                        
T Consensus       724 ~v~vwd~~~~~~~~--~~~~h~~~v~~~~~sp~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  800 (1249)
T 3sfz_A          724 FLKLWDLNQKECRN--TMFGHTNSVNHCRFSPDDE-LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVI  800 (1249)
T ss_dssp             CEEEEETTSSSEEE--EECCCSSCEEEEEECSSTT-EEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCC
T ss_pred             eEEEEECCCcchhh--eecCCCCCEEEEEEecCCC-EEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccce
Confidence            99999999887543  2223333444444443322 11222233344555544332                        


Q ss_pred             ------------------------------eeeecCCCCCC----ceeccCCCceEEEeecCcCeEEEEecCCCceeeee
Q 021291          143 ------------------------------TVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRL  188 (314)
Q Consensus       143 ------------------------------~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~  188 (314)
                                                    .......+|..    ++|+|++..++  +++.|+.|++||+.++..+..+
T Consensus       801 v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~--~~~~dg~v~vwd~~~~~~~~~~  878 (1249)
T 3sfz_A          801 VKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAV--IALSQYCVELWNIDSRLKVADC  878 (1249)
T ss_dssp             BCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEE--EECSSSCEEEEETTTTEEEEEE
T ss_pred             EEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEE--EEeCCCeEEEEEcCCCceeeec
Confidence                                          11122223333    78888887544  5666899999999998888777


Q ss_pred             cccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEE-------------------------------
Q 021291          189 HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD-------------------------------  237 (314)
Q Consensus       189 ~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd-------------------------------  237 (314)
                      .        +|    ...+.++. |+|+   |. ++++++.||.|++||                               
T Consensus       879 ~--------~h----~~~v~~v~-~spd---g~-~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  941 (1249)
T 3sfz_A          879 R--------GH----LSWVHGVM-FSPD---GS-SFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVD  941 (1249)
T ss_dssp             C--------CC----SSCEEEEE-ECTT---SS-EEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEE
T ss_pred             C--------CC----ccceEEEE-ECCC---CC-EEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEec
Confidence            6        55    33555665 6665   33 556666666666665                               


Q ss_pred             ------------------------------------------------ccCCCCceEeeecCCcceEEEEEeCCCCeEEE
Q 021291          238 ------------------------------------------------IRNPGIPLTAMKVHLEPVLCLSIDESCNGGIS  269 (314)
Q Consensus       238 ------------------------------------------------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s  269 (314)
                                                                      +.+ +..+..+.+|...|++++|+|++++|++
T Consensus       942 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~-~~~~~~~~~h~~~v~~l~~s~dg~~l~s 1020 (1249)
T 3sfz_A          942 NIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN-NRVFSSGVGHKKAVRHIQFTADGKTLIS 1020 (1249)
T ss_dssp             SSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTT-TSCEEECCCCSSCCCCEEECSSSSCEEE
T ss_pred             CCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCC-CceeeecccCCCceEEEEECCCCCEEEE
Confidence                                                            333 4556667789999999999999999999


Q ss_pred             ecCCCcEEEEecCCCeeeE
Q 021291          270 GGADQKIVLYNLDHSTYVL  288 (314)
Q Consensus       270 ~s~dg~i~iw~~~~~~~~~  288 (314)
                      ++.||.|++||+.+++...
T Consensus      1021 ~~~dg~i~vwd~~~~~~~~ 1039 (1249)
T 3sfz_A         1021 SSEDSVIQVWNWQTGDYVF 1039 (1249)
T ss_dssp             ECSSSBEEEEETTTTEEEC
T ss_pred             EcCCCEEEEEECCCCceEE
Confidence            9999999999999987654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.97  E-value=1.2e-29  Score=231.16  Aligned_cols=255  Identities=17%  Similarity=0.195  Sum_probs=199.1

Q ss_pred             CCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC
Q 021291            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (314)
Q Consensus         7 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg   86 (314)
                      .++.+..+.+|.++|++++|+|++++|++|+.||.|++||+.+++.+..+..|...  |.+++|+|  ++.+|++++.||
T Consensus        44 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~--v~~~~~s~--~~~~l~~~~~dg  119 (814)
T 3mkq_A           44 TQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDY--IRSIAVHP--TKPYVLSGSDDL  119 (814)
T ss_dssp             TTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSC--EEEEEECS--SSSEEEEEETTS
T ss_pred             CCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCC--EEEEEEeC--CCCEEEEEcCCC
Confidence            35678899999999999999999999999999999999999999999999989854  99999999  999999999999


Q ss_pred             eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceecc--CC
Q 021291           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPA--EG  160 (314)
Q Consensus        87 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~  160 (314)
                      +|++||+.++.... ..+..+........+++............+...+|++............+..    ++|+|  ++
T Consensus       120 ~i~vw~~~~~~~~~-~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  198 (814)
T 3mkq_A          120 TVKLWNWENNWALE-QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDK  198 (814)
T ss_dssp             EEEEEEGGGTSEEE-EEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTC
T ss_pred             EEEEEECCCCceEE-EEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCC
Confidence            99999998763211 0223333444455555422223334445566778888665544333333322    88988  66


Q ss_pred             CceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccC
Q 021291          161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (314)
Q Consensus       161 ~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~  240 (314)
                      ..++  +++.|+.|++||+++++.+..+.        +|    ...+.++. |+|+   +. ++++++.||.|++||+.+
T Consensus       199 ~~l~--~~~~dg~i~~~d~~~~~~~~~~~--------~~----~~~v~~~~-~~~~---~~-~l~~~~~dg~v~vwd~~~  259 (814)
T 3mkq_A          199 PYMI--TASDDLTIKIWDYQTKSCVATLE--------GH----MSNVSFAV-FHPT---LP-IIISGSEDGTLKIWNSST  259 (814)
T ss_dssp             CEEE--EECTTSEEEEEETTTTEEEEEEE--------CC----SSCEEEEE-ECSS---SS-EEEEEETTSCEEEEETTT
T ss_pred             CEEE--EEeCCCEEEEEECCCCcEEEEEc--------CC----CCCEEEEE-EcCC---CC-EEEEEeCCCeEEEEECCC
Confidence            6443  57779999999999999888887        56    44678887 9998   44 899999999999999998


Q ss_pred             CCCceEeeecCCcceEEEEEeCCCCe-EEEecCCCcEEEEecCCCee
Q 021291          241 PGIPLTAMKVHLEPVLCLSIDESCNG-GISGGADQKIVLYNLDHSTY  286 (314)
Q Consensus       241 ~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~s~dg~i~iw~~~~~~~  286 (314)
                       ++.+..+..|...|.+++|+|++.. +++++.|+.+.+|++..+..
T Consensus       260 -~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (814)
T 3mkq_A          260 -YKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEP  305 (814)
T ss_dssp             -CSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSC
T ss_pred             -CcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCc
Confidence             8889999999999999999999874 24555677799999887654

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.1e-29  Score=232.39  Aligned_cols=261  Identities=11%  Similarity=0.090  Sum_probs=174.8

Q ss_pred             EecCCCCceeEEEEccC-CCEEEEecCCCeEEEEeCCCCeEEEEEeccC----------------CcccEEEEEEcccCC
Q 021291           13 VLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHRTVSSSWVHS----------------AAHGIVSVATGPSIG   75 (314)
Q Consensus        13 ~l~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~----------------~~~~v~~~~~~~~~~   75 (314)
                      .+++|.++|++++|+|+ +..|++|+.||.| +||+++++.+..+..|.                +...|.+++|+|  +
T Consensus       146 ~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp--d  222 (902)
T 2oaj_A          146 FPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP--N  222 (902)
T ss_dssp             CSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT--T
T ss_pred             ccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC--C
Confidence            35789999999999995 5789999999999 99999999998887661                114599999999  9


Q ss_pred             CCeEEEeecCCeEEEEeCCCCCCCCCCee---eee-------------cceeeEEEeeeeeccc----------------
Q 021291           76 LNKVISQGRDGTVKCWDIENGGLSSNPSL---TIK-------------TNSYHFCKLSLVKEPY----------------  123 (314)
Q Consensus        76 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~---~~~-------------~~~~~~~~~~~~~~~~----------------  123 (314)
                      +.+|++++.||+|++||+++++++....+   ..+             ........+.+...+.                
T Consensus       223 g~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~  302 (902)
T 2oaj_A          223 SLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDN  302 (902)
T ss_dssp             SSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSC
T ss_pred             CCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCC
Confidence            99999999999999999988764220000   000             0011111111000000                


Q ss_pred             ----------------------------------------------------------------cccccCCCCcceeecc
Q 021291          124 ----------------------------------------------------------------ANAKQANEPKDCYERE  139 (314)
Q Consensus       124 ----------------------------------------------------------------~~~~~~~~~~~~~~~~  139 (314)
                                                                                      .......+....|++.
T Consensus       303 ~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~  382 (902)
T 2oaj_A          303 QSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYP  382 (902)
T ss_dssp             CCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETT
T ss_pred             ceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECC
Confidence                                                                            0000011223444443


Q ss_pred             CCceeee----------------------------------------cCCCCCC----ceeccCCCceEEEeecCcCeEE
Q 021291          140 VGETVDT----------------------------------------DSLCDSK----DDVPAEGPKYMAVAGEQLSEVE  175 (314)
Q Consensus       140 ~~~~~~~----------------------------------------~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~  175 (314)
                      .+.....                                        .+.+|..    ++|+|+++. + ++|+.|++|+
T Consensus       383 ~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~-l-aSgs~DgtVr  460 (902)
T 2oaj_A          383 SGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTA-F-ITGHSNGSVR  460 (902)
T ss_dssp             TCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEE-E-EEEETTSEEE
T ss_pred             CCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcE-E-EEecCCCcEE
Confidence            2211110                                        1223332    567888763 3 3788899999


Q ss_pred             EEecCCCceee--eeccc-ccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCC----------
Q 021291          176 IWDLNTAERCT--RLHQN-SCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG----------  242 (314)
Q Consensus       176 vwd~~~~~~~~--~~~~~-~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~----------  242 (314)
                      +||+.++....  .+... ...-..+|    ...+.+++ |+|+   |+ +||+|+.||+|+|||+.+..          
T Consensus       461 lWd~~~g~~~~~~~~~~~l~~~~~~~h----~~~V~sva-fspd---g~-~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~  531 (902)
T 2oaj_A          461 IYDASHGDIQDNASFEVNLSRTLNKAK----ELAVDKIS-FAAE---TL-ELAVSIETGDVVLFKYEVNQFYSVENRPES  531 (902)
T ss_dssp             EEESSCCTTTTTBCEEEEHHHHTTCSS----SCCEEEEE-EETT---TT-EEEEEETTSCEEEEEEEECCC---------
T ss_pred             EEECCCccccCCceEEeechhhcCCCC----CCceeEEE-ecCC---CC-eEEEEecCcEEEEEEecCccccCccccCCC
Confidence            99998874211  11100 00000023    45788998 9998   55 99999999999999997621          


Q ss_pred             ----------------------------------CceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeE
Q 021291          243 ----------------------------------IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVL  288 (314)
Q Consensus       243 ----------------------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~  288 (314)
                                                        +++..+.+|.+.|++|+|+|+| +||+|+.|++|++||++++..++
T Consensus       532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~  610 (902)
T 2oaj_A          532 GDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIY  610 (902)
T ss_dssp             ------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEE
T ss_pred             cccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEE
Confidence                                              2367788999999999999999 99999999999999998877654

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.4e-29  Score=212.59  Aligned_cols=258  Identities=10%  Similarity=0.034  Sum_probs=177.6

Q ss_pred             ceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCC---CCeEEEEEecc--------C--CcccEEEEEEcccCCC
Q 021291           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTV---QHRTVSSSWVH--------S--AAHGIVSVATGPSIGL   76 (314)
Q Consensus        10 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~---~~~~~~~~~~~--------~--~~~~v~~~~~~~~~~~   76 (314)
                      ....+ +|.+.|++++|+|++++|++|+.||.|++||++   +++.+..+..+        .  ....+.++.+....++
T Consensus       104 ~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  182 (437)
T 3gre_A          104 SSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEK  182 (437)
T ss_dssp             CSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSC
T ss_pred             eeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCC
Confidence            34444 499999999999999999999999999999995   55544433322        1  2244777773322288


Q ss_pred             CeEEEeecCCeEEEEeCCCCCCCCCCeeee--ecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC-
Q 021291           77 NKVISQGRDGTVKCWDIENGGLSSNPSLTI--KTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-  153 (314)
Q Consensus        77 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  153 (314)
                      .+|++++.|+.|++||+++++...  .+..  +........+++.. .........+...+|+++...........|.. 
T Consensus       183 ~~l~~~~~d~~i~iwd~~~~~~~~--~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  259 (437)
T 3gre_A          183 SLLVALTNLSRVIIFDIRTLERLQ--IIENSPRHGAVSSICIDEEC-CVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAP  259 (437)
T ss_dssp             EEEEEEETTSEEEEEETTTCCEEE--EEECCGGGCCEEEEEECTTS-CEEEEEETTSCEEEEETTTTEEEEEEBCTTCEE
T ss_pred             CEEEEEeCCCeEEEEeCCCCeeeE--EEccCCCCCceEEEEECCCC-CEEEEEcCCCeEEEEEcCCccEEEEEecCCCCc
Confidence            999999999999999999887543  2222  22344444444332 22334445567888999887665544334443 


Q ss_pred             ---ceec----cCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCC------CC--------cCCCCCceeeeEEE
Q 021291          154 ---DDVP----AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGS------PN--------FSSKGRGMCMAVQA  212 (314)
Q Consensus       154 ---~~~~----~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~------~~--------h~~~~~~~~~~~~~  212 (314)
                         ++|+    +++.  ++++|+.|+.|++||+++++.+..+........      .+        ........+.+++ 
T Consensus       260 v~~~~~~~~~s~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~-  336 (437)
T 3gre_A          260 ITHVEVCQFYGKNSV--IVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTIS-  336 (437)
T ss_dssp             EEEEEECTTTCTTEE--EEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEE-
T ss_pred             eEEEEeccccCCCcc--EEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEE-
Confidence               6444    4553  334788899999999999998887762110000      00        0001344577776 


Q ss_pred             ecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeec-------------------------------------CCcce
Q 021291          213 YLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV-------------------------------------HLEPV  255 (314)
Q Consensus       213 ~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~-------------------------------------h~~~v  255 (314)
                      |+ +   ++ +|++|+.|+.|++||+++ ++.+..+.+                                     |...|
T Consensus       337 ~~-~---~~-~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I  410 (437)
T 3gre_A          337 VS-N---DK-ILLTDEATSSIVMFSLNE-LSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDII  410 (437)
T ss_dssp             EE-T---TE-EEEEEGGGTEEEEEETTC-GGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCE
T ss_pred             EC-C---ce-EEEecCCCCeEEEEECCC-cccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccce
Confidence            88 4   33 899999999999999998 666666654                                     88999


Q ss_pred             EEEEEeCC--CCeEEEecCCCcEEEEe
Q 021291          256 LCLSIDES--CNGGISGGADQKIVLYN  280 (314)
Q Consensus       256 ~~~~~~~~--~~~l~s~s~dg~i~iw~  280 (314)
                      ++++|.++  +.+|++|+.||.|+||+
T Consensus       411 ~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          411 NSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             EEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             eeEeeeccCCceEEEEEcCCceEEEeC
Confidence            99999877  78999999999999995

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.97  E-value=7.3e-29  Score=211.05  Aligned_cols=245  Identities=18%  Similarity=0.297  Sum_probs=191.0

Q ss_pred             CCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC
Q 021291            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (314)
Q Consensus         7 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg   86 (314)
                      .++++..+.+|...|.+++|+  +++|++|+.||.|++||+.+++.+..+.+|...  |.+++|    +++.+++++.||
T Consensus       188 ~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~--v~~~~~----~~~~l~~~~~dg  259 (445)
T 2ovr_B          188 TGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAA--VRCVQY----DGRRVVSGAYDF  259 (445)
T ss_dssp             TTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSC--EEEEEE----CSSCEEEEETTS
T ss_pred             cCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCccc--EEEEEE----CCCEEEEEcCCC
Confidence            346788999999999999995  568999999999999999999999999999854  999999    348999999999


Q ss_pred             eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC--ceeccCCCceE
Q 021291           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYM  164 (314)
Q Consensus        87 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  164 (314)
                      .|++||+++++...    .+..+......+.. ...........+...+|++....... .+.+|..  .++.++++.+ 
T Consensus       260 ~i~iwd~~~~~~~~----~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~l-  332 (445)
T 2ovr_B          260 MVKVWDPETETCLH----TLQGHTNRVYSLQF-DGIHVVSGSLDTSIRVWDVETGNCIH-TLTGHQSLTSGMELKDNIL-  332 (445)
T ss_dssp             CEEEEEGGGTEEEE----EECCCSSCEEEEEE-CSSEEEEEETTSCEEEEETTTCCEEE-EECCCCSCEEEEEEETTEE-
T ss_pred             EEEEEECCCCcEeE----EecCCCCceEEEEE-CCCEEEEEeCCCeEEEEECCCCCEEE-EEcCCcccEEEEEEeCCEE-
Confidence            99999999876533    33333322333333 22233344456678888888776544 3445555  5566666543 


Q ss_pred             EEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCc
Q 021291          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (314)
Q Consensus       165 ~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~  244 (314)
                      + +|+.||.|++||+++++.+..+.        ++. .....+.++. |++.      ++++|+.||.|++||+++ ++.
T Consensus       333 ~-~~~~dg~i~vwd~~~~~~~~~~~--------~~~-~~~~~v~~~~-~~~~------~l~s~~~dg~v~iwd~~~-~~~  394 (445)
T 2ovr_B          333 V-SGNADSTVKIWDIKTGQCLQTLQ--------GPN-KHQSAVTCLQ-FNKN------FVITSSDDGTVKLWDLKT-GEF  394 (445)
T ss_dssp             E-EEETTSCEEEEETTTCCEEEEEC--------STT-SCSSCEEEEE-ECSS------EEEEEETTSEEEEEETTT-CCE
T ss_pred             E-EEeCCCeEEEEECCCCcEEEEEc--------cCC-CCCCCEEEEE-ECCC------EEEEEeCCCeEEEEECCC-Cce
Confidence            3 57779999999999999888887        321 1355788887 8754      899999999999999998 777


Q ss_pred             eEee-----ecCCcceEEEEEeCCCCeEEEecCCCc----EEEEecCCC
Q 021291          245 LTAM-----KVHLEPVLCLSIDESCNGGISGGADQK----IVLYNLDHS  284 (314)
Q Consensus       245 ~~~~-----~~h~~~v~~~~~~~~~~~l~s~s~dg~----i~iw~~~~~  284 (314)
                      +..+     .+|...|++++|+|++.+|++|+.||.    |.+||++..
T Consensus       395 ~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          395 IRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             EEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred             eeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence            8777     478889999999999999999999998    999999864

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=8.7e-29  Score=210.84  Aligned_cols=212  Identities=10%  Similarity=0.052  Sum_probs=164.6

Q ss_pred             EecCCCCceeEEEEccCCCEE-EEecCCCeEEEEeCC--CCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEE
Q 021291           13 VLRGHRASVTDVCFHQTKPIL-FAGTTGGELRIWDTV--QHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (314)
Q Consensus        13 ~l~~h~~~v~~~~~~~~~~~l-~s~~~dg~v~iwd~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~   89 (314)
                      ...+|.+.|++++|+|++++| ++|+.||.|+|||+.  +++.+..+..+.....|.+++|+|  ++++|++++.||.|+
T Consensus        97 ~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~~g~v~  174 (450)
T 2vdu_B           97 GAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE--DDTTVIIADKFGDVY  174 (450)
T ss_dssp             ---CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT--TSSEEEEEETTSEEE
T ss_pred             CCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC--CCCEEEEEeCCCcEE
Confidence            345788899999999999996 899999999999999  888888887544336699999999  999999999999999


Q ss_pred             EEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccC---CCceEEE
Q 021291           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAE---GPKYMAV  166 (314)
Q Consensus        90 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  166 (314)
                      +|++.+++....+...+..+......                                      ++|+|+   ++. ++ 
T Consensus       175 ~~~~~~~~~~~~~~~~~~~h~~~v~~--------------------------------------~~~sp~~~~~~~-l~-  214 (450)
T 2vdu_B          175 SIDINSIPEEKFTQEPILGHVSMLTD--------------------------------------VHLIKDSDGHQF-II-  214 (450)
T ss_dssp             EEETTSCCCSSCCCCCSEECSSCEEE--------------------------------------EEEEECTTSCEE-EE-
T ss_pred             EEecCCcccccccceeeecccCceEE--------------------------------------EEEcCCCCCCcE-EE-
Confidence            99998876432111111111111000                                      568888   543 33 


Q ss_pred             eecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceE
Q 021291          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (314)
Q Consensus       167 ~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~  246 (314)
                      +|+.|+.|++||+++++.+..+..       +|    ...+.++. |+ +   +. +|++|+.|+.|++||+++ ++++.
T Consensus       215 s~~~d~~i~vwd~~~~~~~~~~~~-------~h----~~~v~~~~-~s-d---~~-~l~s~~~d~~v~vwd~~~-~~~~~  276 (450)
T 2vdu_B          215 TSDRDEHIKISHYPQCFIVDKWLF-------GH----KHFVSSIC-CG-K---DY-LLLSAGGDDKIFAWDWKT-GKNLS  276 (450)
T ss_dssp             EEETTSCEEEEEESCTTCEEEECC-------CC----SSCEEEEE-EC-S---TT-EEEEEESSSEEEEEETTT-CCEEE
T ss_pred             EEcCCCcEEEEECCCCceeeeeec-------CC----CCceEEEE-EC-C---CC-EEEEEeCCCeEEEEECCC-CcEee
Confidence            677799999999999988777432       55    45788887 99 6   55 899999999999999998 77777


Q ss_pred             eeecC-------------------------CcceEEEEEeCCCCeEEEec-CCCcEEEEec--CCC
Q 021291          247 AMKVH-------------------------LEPVLCLSIDESCNGGISGG-ADQKIVLYNL--DHS  284 (314)
Q Consensus       247 ~~~~h-------------------------~~~v~~~~~~~~~~~l~s~s-~dg~i~iw~~--~~~  284 (314)
                      .+..+                         ...|.+++|+|++++|++++ .|+.|++|++  ..+
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~  342 (450)
T 2vdu_B          277 TFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQK  342 (450)
T ss_dssp             EEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSST
T ss_pred             eecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCC
Confidence            77632                         35799999999999999998 8999999999  554

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.1e-30  Score=211.38  Aligned_cols=214  Identities=11%  Similarity=0.039  Sum_probs=159.3

Q ss_pred             EccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeee
Q 021291           26 FHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLT  105 (314)
Q Consensus        26 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~  105 (314)
                      +.+++.+|++|+.||+|++||+.+++.+..+.  .  ..|.++.|+|  +   +++++.|++|++|+......    .+.
T Consensus        44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~--~~v~~~~~~~--~---~~s~s~D~~i~~w~~~~~~~----~~~  110 (343)
T 3lrv_A           44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--T--PNPRTGGEHP--A---IISRGPCNRLLLLYPGNQIT----ILD  110 (343)
T ss_dssp             SSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--E--ECCCTTCCCC--S---EEEECSTTEEEEEETTTEEE----EEE
T ss_pred             hcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--c--CCceeeeeCC--c---eEEecCCCeEEEEEccCceE----Eee
Confidence            34578899999999999999999999888876  2  4488999999  5   99999999999998874210    001


Q ss_pred             eecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceecc--CCCceEEEeecCcCeEEEEec
Q 021291          106 IKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPA--EGPKYMAVAGEQLSEVEIWDL  179 (314)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~g~~d~~i~vwd~  179 (314)
                      ...                                ...+.....+|..    ++|+|  +++.++  +++.|++|++||+
T Consensus       111 ~~~--------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~--s~s~dg~i~~wd~  156 (343)
T 3lrv_A          111 SKT--------------------------------NKVLREIEVDSANEIIYMYGHNEVNTEYFI--WADNRGTIGFQSY  156 (343)
T ss_dssp             TTT--------------------------------CCEEEEEECCCSSCEEEEECCC---CCEEE--EEETTCCEEEEES
T ss_pred             cCC--------------------------------cceeEEeecCCCCCEEEEEcCCCCCCCEEE--EEeCCCcEEEEEC
Confidence            100                                0000001111111    67888  776443  6777999999999


Q ss_pred             CCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCce-Eeeec-CCcceEE
Q 021291          180 NTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL-TAMKV-HLEPVLC  257 (314)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~-~~~~~-h~~~v~~  257 (314)
                      ++++....+.        .+   ....+.++. |+|+   |. +|++|+.||.|++||+++ ++.+ ..+.. |..+|++
T Consensus       157 ~~~~~~~~~~--------~~---~~~~i~~~~-~~pd---g~-~lasg~~dg~i~iwd~~~-~~~~~~~~~~~h~~~v~~  219 (343)
T 3lrv_A          157 EDDSQYIVHS--------AK---SDVEYSSGV-LHKD---SL-LLALYSPDGILDVYNLSS-PDQASSRFPVDEEAKIKE  219 (343)
T ss_dssp             SSSCEEEEEC--------CC---SSCCCCEEE-ECTT---SC-EEEEECTTSCEEEEESSC-TTSCCEECCCCTTSCEEE
T ss_pred             CCCcEEEEEe--------cC---CCCceEEEE-ECCC---CC-EEEEEcCCCEEEEEECCC-CCCCccEEeccCCCCEEE
Confidence            9998866554        22   233577887 9998   55 999999999999999998 5555 77887 9999999


Q ss_pred             EEEeCCCCeEEEecCCCcEEEEecCCCeeeEee----------e--eeeecCCCceece
Q 021291          258 LSIDESCNGGISGGADQKIVLYNLDHSTYVLFG----------I--GFVCDQEGNKFGT  304 (314)
Q Consensus       258 ~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~----------~--~~~~~~~~~~~~~  304 (314)
                      ++|+|++.+|++++ |+.|++||+++++.+..+          .  .++++|+|..+++
T Consensus       220 l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~  277 (343)
T 3lrv_A          220 VKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIA  277 (343)
T ss_dssp             EEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEE
T ss_pred             EEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEE
Confidence            99999999999999 559999999988765321          1  2778888887766

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.97  E-value=2.3e-28  Score=215.96  Aligned_cols=256  Identities=16%  Similarity=0.202  Sum_probs=195.4

Q ss_pred             CceEEecCCCCc-eeEEEEcc--CCCEEEEecCCCeEEEEeCCCC--------eEEEEEeccCCcccEEEEEEcccCCCC
Q 021291            9 DPVAVLRGHRAS-VTDVCFHQ--TKPILFAGTTGGELRIWDTVQH--------RTVSSSWVHSAAHGIVSVATGPSIGLN   77 (314)
Q Consensus         9 ~~~~~l~~h~~~-v~~~~~~~--~~~~l~s~~~dg~v~iwd~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~   77 (314)
                      +++..+.+|.+. |++++|+|  ++++|++|+.||.|++||+.++        +.+..+..|..  .|.+++|+|  +++
T Consensus        54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~--~~~  129 (615)
T 1pgu_A           54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAG--PISDISWDF--EGR  129 (615)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSS--CEEEEEECT--TSS
T ss_pred             ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccc--cEEEEEEeC--CCC
Confidence            789999999999 99999999  9999999999999999999754        66777777874  499999999  999


Q ss_pred             eEEEeecC----CeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCC-
Q 021291           78 KVISQGRD----GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDS-  152 (314)
Q Consensus        78 ~l~s~~~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  152 (314)
                      +|++++.+    +.|++||.  ++...  .+..+........+++............+...+|++...+.......... 
T Consensus       130 ~l~~~~~~~~~~~~v~~~d~--~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~  205 (615)
T 1pgu_A          130 RLCVVGEGRDNFGVFISWDS--GNSLG--EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQ  205 (615)
T ss_dssp             EEEEEECCSSCSEEEEETTT--CCEEE--ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCT
T ss_pred             EEEEeccCCCCccEEEEEEC--CCcce--eeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCC
Confidence            99999988    78999983  32221  22233334444555544433444555567778888777665443332222 


Q ss_pred             --C---ceeccC-CCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEE
Q 021291          153 --K---DDVPAE-GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA  226 (314)
Q Consensus       153 --~---~~~~~~-~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~  226 (314)
                        .   ++|+|+ ++.++  +++.|+.|++||+++++.+..+..       . .......+.++. |+ +   +. +|++
T Consensus       206 ~~~v~~~~~~~~~~~~l~--~~~~dg~i~vwd~~~~~~~~~~~~-------~-~~~~~~~v~~~~-~~-~---~~-~l~~  269 (615)
T 1pgu_A          206 GSFVRDVEFSPDSGEFVI--TVGSDRKISCFDGKSGEFLKYIED-------D-QEPVQGGIFALS-WL-D---SQ-KFAT  269 (615)
T ss_dssp             TCCEEEEEECSTTCCEEE--EEETTCCEEEEETTTCCEEEECCB-------T-TBCCCSCEEEEE-ES-S---SS-EEEE
T ss_pred             CceEEEEEECCCCCCEEE--EEeCCCeEEEEECCCCCEeEEecc-------c-ccccCCceEEEE-Ec-C---CC-EEEE
Confidence              3   899999 76444  566689999999999998887721       0 001355788887 98 6   44 8999


Q ss_pred             eecCCcEEEEEccCCCCceEeeecC----CcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEee
Q 021291          227 GYEDGSILVWDIRNPGIPLTAMKVH----LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFG  290 (314)
Q Consensus       227 g~~dg~i~vwd~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~  290 (314)
                      ++.|+.|++||+++ ++.+..+..+    ...+.++.|. ++.++++++.||.|++||+.+++.+...
T Consensus       270 ~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~  335 (615)
T 1pgu_A          270 VGADATIRVWDVTT-SKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTI  335 (615)
T ss_dssp             EETTSEEEEEETTT-TEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEE
T ss_pred             EcCCCcEEEEECCC-CcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEE
Confidence            99999999999998 7888888876    4678888886 7889999999999999999987776654

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.6e-28  Score=207.92  Aligned_cols=212  Identities=9%  Similarity=0.039  Sum_probs=160.9

Q ss_pred             CCceeEEEEccCCCEEEEecCCCeEEEEeCCCCe---EEEEEeccCC---------------------------------
Q 021291           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR---TVSSSWVHSA---------------------------------   61 (314)
Q Consensus        18 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~---~~~~~~~~~~---------------------------------   61 (314)
                      ..++.+++|+++|++|+++ .++.|++||+.+++   .+..+..+..                                 
T Consensus         4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            3578999999999976665 57799999999988   6665553321                                 


Q ss_pred             -------------------cccEEEEEEcccCCCCeE-EEeecCCeEEEEeCC--CCCCCCCCeeeeecceeeEEEeeee
Q 021291           62 -------------------AHGIVSVATGPSIGLNKV-ISQGRDGTVKCWDIE--NGGLSSNPSLTIKTNSYHFCKLSLV  119 (314)
Q Consensus        62 -------------------~~~v~~~~~~~~~~~~~l-~s~~~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~  119 (314)
                                         ...|.+++|+|  ++++| ++++.||+|++||+.  +++...  .+...........    
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--d~~~l~~~~~~dg~v~iwd~~~~~~~~~~--~~~~~~~~~~v~~----  154 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTS--DESRLIACADSDKSLLVFDVDKTSKNVLK--LRKRFCFSKRPNA----  154 (450)
T ss_dssp             -----------------CCCCCEEEEEECT--TSSEEEEEEGGGTEEEEEEECSSSSSCEE--EEEEEECSSCEEE----
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcC--CCCEEEEEECCCCeEEEEECcCCCCceee--eeecccCCCCceE----
Confidence                               01499999999  99986 899999999999998  665432  1111111111100    


Q ss_pred             eccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceee----eecccccCC
Q 021291          120 KEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCT----RLHQNSCGG  195 (314)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~----~~~~~~~~~  195 (314)
                                                        ++|+|+++.++  +|+.|+.|++|++.+++...    .+.      
T Consensus       155 ----------------------------------~~~sp~~~~l~--~~~~~g~v~~~~~~~~~~~~~~~~~~~------  192 (450)
T 2vdu_B          155 ----------------------------------ISIAEDDTTVI--IADKFGDVYSIDINSIPEEKFTQEPIL------  192 (450)
T ss_dssp             ----------------------------------EEECTTSSEEE--EEETTSEEEEEETTSCCCSSCCCCCSE------
T ss_pred             ----------------------------------EEEcCCCCEEE--EEeCCCcEEEEecCCcccccccceeee------
Confidence                                              56999987554  46668999999998876543    444      


Q ss_pred             CCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEe-eecCCcceEEEEEeCCCCeEEEecCCC
Q 021291          196 SPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA-MKVHLEPVLCLSIDESCNGGISGGADQ  274 (314)
Q Consensus       196 ~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~s~s~dg  274 (314)
                        +|    ...+.++. |+|+...++ +|++|+.|+.|++||+++ +..+.. +.+|...|++++|+ ++.+|++++.|+
T Consensus       193 --~h----~~~v~~~~-~sp~~~~~~-~l~s~~~d~~i~vwd~~~-~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~  262 (450)
T 2vdu_B          193 --GH----VSMLTDVH-LIKDSDGHQ-FIITSDRDEHIKISHYPQ-CFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDD  262 (450)
T ss_dssp             --EC----SSCEEEEE-EEECTTSCE-EEEEEETTSCEEEEEESC-TTCEEEECCCCSSCEEEEEEC-STTEEEEEESSS
T ss_pred             --cc----cCceEEEE-EcCCCCCCc-EEEEEcCCCcEEEEECCC-CceeeeeecCCCCceEEEEEC-CCCEEEEEeCCC
Confidence              45    45788887 999711133 899999999999999998 666766 66999999999999 999999999999


Q ss_pred             cEEEEecCCCeeeEee
Q 021291          275 KIVLYNLDHSTYVLFG  290 (314)
Q Consensus       275 ~i~iw~~~~~~~~~~~  290 (314)
                      .|++||+.+++.+...
T Consensus       263 ~v~vwd~~~~~~~~~~  278 (450)
T 2vdu_B          263 KIFAWDWKTGKNLSTF  278 (450)
T ss_dssp             EEEEEETTTCCEEEEE
T ss_pred             eEEEEECCCCcEeeee
Confidence            9999999999876543

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=1.6e-28  Score=201.62  Aligned_cols=242  Identities=12%  Similarity=0.061  Sum_probs=182.1

Q ss_pred             ceEEecCCCCceeEEEEccCCC-EEEEecCCCeEEEEeC-CCCeEEEEEec--cCCcccEEEEEEcccCCCCeEEEeecC
Q 021291           10 PVAVLRGHRASVTDVCFHQTKP-ILFAGTTGGELRIWDT-VQHRTVSSSWV--HSAAHGIVSVATGPSIGLNKVISQGRD   85 (314)
Q Consensus        10 ~~~~l~~h~~~v~~~~~~~~~~-~l~s~~~dg~v~iwd~-~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (314)
                      +...+.+|...|++++|+|+++ +|++|+.||.|++||+ .+++. ..+..  |.  ..|.+++|+|   ++.|++++.|
T Consensus        48 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~--~~v~~l~~~~---~~~l~s~~~d  121 (342)
T 1yfq_A           48 DLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEAN--LGICRICKYG---DDKLIAASWD  121 (342)
T ss_dssp             EEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCC--SCEEEEEEET---TTEEEEEETT
T ss_pred             cceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCC--CceEEEEeCC---CCEEEEEcCC
Confidence            3566778999999999999999 9999999999999999 77655 66777  77  4599999998   4899999999


Q ss_pred             CeEEEEeCCC---------CCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccC-Cce-eeecCCCCCC-
Q 021291           86 GTVKCWDIEN---------GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREV-GET-VDTDSLCDSK-  153 (314)
Q Consensus        86 g~v~iwd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~-  153 (314)
                      +.|++||+++         ++...  .+. .........++...   .......+...+|++.. ... .......+.. 
T Consensus       122 ~~i~iwd~~~~~~~~~~~~~~~~~--~~~-~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  195 (342)
T 1yfq_A          122 GLIEVIDPRNYGDGVIAVKNLNSN--NTK-VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQ  195 (342)
T ss_dssp             SEEEEECHHHHTTBCEEEEESCSS--SSS-SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCCCEEEECSCSSC
T ss_pred             CeEEEEcccccccccccccCCeee--EEe-eCCceEEEEecCCc---EEEEeCCCeEEEEECCccccccceeeecCCCCc
Confidence            9999999987         65443  222 22223333333222   33344455677788776 432 2222223333 


Q ss_pred             ---ceecc-CCCceEEEeecCcCeEEEEecCCC------ceeeeecccccCCCCCcCC-----CCCceeeeEEEecCCCC
Q 021291          154 ---DDVPA-EGPKYMAVAGEQLSEVEIWDLNTA------ERCTRLHQNSCGGSPNFSS-----KGRGMCMAVQAYLPSKS  218 (314)
Q Consensus       154 ---~~~~~-~~~~~~~~~g~~d~~i~vwd~~~~------~~~~~~~~~~~~~~~~h~~-----~~~~~~~~~~~~~p~~~  218 (314)
                         ++|+| +++.++  +++.||.|++||++..      +....+.        .|..     .....+.++. |+|+  
T Consensus       196 i~~i~~~~~~~~~l~--~~~~dg~i~i~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~i~~~~-~s~~--  262 (342)
T 1yfq_A          196 IRDVALLPKEQEGYA--CSSIDGRVAVEFFDDQGDDYNSSKRFAFR--------CHRLNLKDTNLAYPVNSIE-FSPR--  262 (342)
T ss_dssp             EEEEEECSGGGCEEE--EEETTSEEEEEECCTTCCSTTCTTCEEEE--------CCCCCTTCCSSCCCEEEEE-ECTT--
T ss_pred             eeEEEECCCCCCEEE--EEecCCcEEEEEEcCCCcccccccceeee--------cccccccccccceeEEEEE-EcCC--
Confidence               88999 886544  5666999999999876      6666666        4433     1234788887 9998  


Q ss_pred             CCceEEEEeecCCcEEEEEccCCCCceEeeecC-CcceEEEEEeCCCCeEEEecCCCc-EEEEec
Q 021291          219 QGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH-LEPVLCLSIDESCNGGISGGADQK-IVLYNL  281 (314)
Q Consensus       219 ~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~s~dg~-i~iw~~  281 (314)
                       ++ +|++|+.||.|++||+++ ++++..+.+| ..+|++++  +++.+|++++.||. .+.|..
T Consensus       263 -~~-~l~~~~~dg~i~vwd~~~-~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~~  322 (342)
T 1yfq_A          263 -HK-FLYTAGSDGIISCWNLQT-RKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             -TC-CEEEEETTSCEEEEETTT-TEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSSS
T ss_pred             -CC-EEEEecCCceEEEEcCcc-HhHhhhhhcccCCCceEec--CCCCeEEEEecCCcccccccc
Confidence             44 899999999999999998 8889999998 99999999  99999999999998 666664

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=4e-27  Score=196.93  Aligned_cols=252  Identities=11%  Similarity=0.055  Sum_probs=187.1

Q ss_pred             CCCceEEecCCCCceeEEEEccCCCEE-EEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEE-Eeec
Q 021291            7 PPDPVAVLRGHRASVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGR   84 (314)
Q Consensus         7 ~~~~~~~l~~h~~~v~~~~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~   84 (314)
                      .++.++.+.+|.. +.+++|+|++++| ++++.|+.|++||+.+++.+..+..+.   .+.+++|+|  ++++|+ +++.
T Consensus        21 ~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~---~v~~~~~sp--dg~~l~~~~~~   94 (391)
T 1l0q_A           21 SNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS---SPQGVAVSP--DGKQVYVTNMA   94 (391)
T ss_dssp             TTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS---SEEEEEECT--TSSEEEEEETT
T ss_pred             CCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC---CccceEECC--CCCEEEEEECC
Confidence            3466777887754 8999999999876 678899999999999999998887664   499999999  888775 5556


Q ss_pred             CCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC---ceeccCCC
Q 021291           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK---DDVPAEGP  161 (314)
Q Consensus        85 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  161 (314)
                      ++.|++||+.+++...  .+... .......+++................+|++...+..... ..+..   ++|+|+++
T Consensus        95 ~~~v~v~d~~~~~~~~--~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~-~~~~~~~~~~~~~dg~  170 (391)
T 1l0q_A           95 SSTLSVIDTTSNTVAG--TVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV-SVGRSPKGIAVTPDGT  170 (391)
T ss_dssp             TTEEEEEETTTTEEEE--EEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE-ECCSSEEEEEECTTSS
T ss_pred             CCEEEEEECCCCeEEE--EEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE-ecCCCcceEEECCCCC
Confidence            7999999999886533  22211 122333344333323233344566777777766544332 22333   89999998


Q ss_pred             ceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEee---cCCcEEEEEc
Q 021291          162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY---EDGSILVWDI  238 (314)
Q Consensus       162 ~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~---~dg~i~vwd~  238 (314)
                      .+++ +++.|+.|++||+++++....+..             ...+.++. |+|+   |+ ++++++   .++.|++||+
T Consensus       171 ~l~~-~~~~~~~v~~~d~~~~~~~~~~~~-------------~~~~~~~~-~~~~---g~-~l~~~~~~~~~~~v~~~d~  231 (391)
T 1l0q_A          171 KVYV-ANFDSMSISVIDTVTNSVIDTVKV-------------EAAPSGIA-VNPE---GT-KAYVTNVDKYFNTVSMIDT  231 (391)
T ss_dssp             EEEE-EETTTTEEEEEETTTTEEEEEEEC-------------SSEEEEEE-ECTT---SS-EEEEEEECSSCCEEEEEET
T ss_pred             EEEE-EeCCCCEEEEEECCCCeEEEEEec-------------CCCccceE-ECCC---CC-EEEEEecCcCCCcEEEEEC
Confidence            7655 566689999999999988777651             33567777 9998   55 666666   6899999999


Q ss_pred             cCCCCceEeeecCCcceEEEEEeCCCCeE-EEecCCCcEEEEecCCCeeeEe
Q 021291          239 RNPGIPLTAMKVHLEPVLCLSIDESCNGG-ISGGADQKIVLYNLDHSTYVLF  289 (314)
Q Consensus       239 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~s~dg~i~iw~~~~~~~~~~  289 (314)
                      ++ ++++..+..|. .+.+++|+|++++| ++++.|+.|++||+.+++.+..
T Consensus       232 ~~-~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~  281 (391)
T 1l0q_A          232 GT-NKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITAT  281 (391)
T ss_dssp             TT-TEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CC-CeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEE
Confidence            98 77788887765 57899999999877 6778999999999999887654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=6.3e-29  Score=208.71  Aligned_cols=211  Identities=19%  Similarity=0.256  Sum_probs=163.4

Q ss_pred             CceEEecCCCCceeEEEEccCC-CEEEEecCCCeEEEEeCCCCeEEEEE--eccCCcccEEEEEEcccCCCCeEEEeecC
Q 021291            9 DPVAVLRGHRASVTDVCFHQTK-PILFAGTTGGELRIWDTVQHRTVSSS--WVHSAAHGIVSVATGPSIGLNKVISQGRD   85 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (314)
                      +++..+.+|...|.+++|+|++ ++|++|+.||.|++||+.+++.+..+  ..|.  ..|.+++|+|  ++++|++++.|
T Consensus       122 ~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~l~~~~~d  197 (402)
T 2aq5_A          122 EPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHP--DTIYSVDWSR--DGALICTSCRD  197 (402)
T ss_dssp             SCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCC--SCEEEEEECT--TSSCEEEEETT
T ss_pred             CceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCC--CceEEEEECC--CCCEEEEEecC
Confidence            6788999999999999999997 69999999999999999999999998  6777  4499999999  99999999999


Q ss_pred             CeEEEEeCCCCCCCCCCeeee-eccee--eEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCc
Q 021291           86 GTVKCWDIENGGLSSNPSLTI-KTNSY--HFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPK  162 (314)
Q Consensus        86 g~v~iwd~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (314)
                      |.|++||+++++...    .+ ..+..  ...                                       ++|+|++. 
T Consensus       198 ~~i~iwd~~~~~~~~----~~~~~~~~~~~~~---------------------------------------~~~~~~~~-  233 (402)
T 2aq5_A          198 KRVRVIEPRKGTVVA----EKDRPHEGTRPVH---------------------------------------AVFVSEGK-  233 (402)
T ss_dssp             SEEEEEETTTTEEEE----EEECSSCSSSCCE---------------------------------------EEECSTTE-
T ss_pred             CcEEEEeCCCCceee----eeccCCCCCcceE---------------------------------------EEEcCCCc-
Confidence            999999999875422    22 11110  000                                       56888875 


Q ss_pred             eEEEee---cCcCeEEEEecCCCce-eeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEc
Q 021291          163 YMAVAG---EQLSEVEIWDLNTAER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI  238 (314)
Q Consensus       163 ~~~~~g---~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~  238 (314)
                      +++ +|   +.|+.|++||+++++. ......       .|    ...+.++. |+|+   ++.++++|+.||.|++||+
T Consensus       234 ~l~-~g~~~~~d~~i~iwd~~~~~~~~~~~~~-------~~----~~~v~~~~-~s~~---~~~l~~~g~~dg~i~i~d~  297 (402)
T 2aq5_A          234 ILT-TGFSRMSERQVALWDTKHLEEPLSLQEL-------DT----SSGVLLPF-FDPD---TNIVYLCGKGDSSIRYFEI  297 (402)
T ss_dssp             EEE-EEECTTCCEEEEEEETTBCSSCSEEEEC-------CC----CSSCEEEE-EETT---TTEEEEEETTCSCEEEEEE
T ss_pred             EEE-EeccCCCCceEEEEcCccccCCceEEec-------cC----CCceeEEE-EcCC---CCEEEEEEcCCCeEEEEEe
Confidence            333 55   6789999999998765 222221       22    33577777 9998   5534456778999999999


Q ss_pred             cCCCCc-eEeeecC--CcceEEEEEeCCCCeEEEecCCCcEEEEecCCCee
Q 021291          239 RNPGIP-LTAMKVH--LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTY  286 (314)
Q Consensus       239 ~~~~~~-~~~~~~h--~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~  286 (314)
                      .+ +++ +..+..|  ..+|.+++|+|++.++++  .++.+++|++.+++.
T Consensus       298 ~~-~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~  345 (402)
T 2aq5_A          298 TS-EAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC  345 (402)
T ss_dssp             CS-STTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred             cC-CCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence            98 443 6566554  589999999999987764  567999999998764

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=6.3e-28  Score=203.88  Aligned_cols=229  Identities=8%  Similarity=0.055  Sum_probs=166.9

Q ss_pred             CCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCC---cccEEEEEEcccCCCCeEEEeecCCeEEEEe
Q 021291           16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA---AHGIVSVATGPSIGLNKVISQGRDGTVKCWD   92 (314)
Q Consensus        16 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd   92 (314)
                      +|.+.|.+++|+|+|.+||+++.||.|+|||.+.  ++..+. |..   ...|.+++|+|  +|++|++|+.||+|+|||
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSP--DG~~LAsgs~DGtVkIWd  157 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNP--IESSIVVGNEDGELQFFS  157 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECS--SSSCEEEEETTSEEEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcC--CCCEEEEEcCCCEEEEEE
Confidence            5688999999999999999999999999999543  666666 542   12499999999  999999999999999999


Q ss_pred             CCCCCCCCCC---eeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCceEE
Q 021291           93 IENGGLSSNP---SLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMA  165 (314)
Q Consensus        93 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~  165 (314)
                      +.++.+....   +.+++..                                      ..+|..    ++|+|+|   ++
T Consensus       158 ~~~~~l~~~~~i~l~ti~~~--------------------------------------~~gh~~~V~sVawSPdg---La  196 (588)
T 2j04_A          158 IRKNSENTPEFYFESSIRLS--------------------------------------DAGSKDWVTHIVWYEDV---LV  196 (588)
T ss_dssp             CCCCTTTCCCCEEEEEEECS--------------------------------------CTTCCCCEEEEEEETTE---EE
T ss_pred             CCCCccccccceeeeeeecc--------------------------------------cccccccEEEEEEcCCc---EE
Confidence            9987532100   1111110                                      011111    6799998   33


Q ss_pred             EeecCcCeEEEEecCCCcee---eeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCC
Q 021291          166 VAGEQLSEVEIWDLNTAERC---TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG  242 (314)
Q Consensus       166 ~~g~~d~~i~vwd~~~~~~~---~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~  242 (314)
                       +++.|++|++||+.++...   .++..       +|    ...+.+++ |+ +    . .+++++ ++.|++||+.. +
T Consensus       197 -ass~D~tVrlWd~~~~~~~~~~~tL~~-------~h----~~~V~sva-Fs-g----~-~LASa~-~~tIkLWd~~~-~  255 (588)
T 2j04_A          197 -AALSNNSVFSMTVSASSHQPVSRMIQN-------AS----RRKITDLK-IV-D----Y-KVVLTC-PGYVHKIDLKN-Y  255 (588)
T ss_dssp             -EEETTCCEEEECCCSSSSCCCEEEEEC-------CC----SSCCCCEE-EE-T----T-EEEEEC-SSEEEEEETTT-T
T ss_pred             -EEeCCCeEEEEECCCCccccceeeecc-------cc----cCcEEEEE-EE-C----C-EEEEEe-CCeEEEEECCC-C
Confidence             3455899999999887732   34531       34    45678887 98 2    2 788887 69999999996 5


Q ss_pred             CceEeeecCCcceEEEEE--eCCCCeEEEecCCCcEEEEecCCCe-----------------------e------eEeee
Q 021291          243 IPLTAMKVHLEPVLCLSI--DESCNGGISGGADQKIVLYNLDHST-----------------------Y------VLFGI  291 (314)
Q Consensus       243 ~~~~~~~~h~~~v~~~~~--~~~~~~l~s~s~dg~i~iw~~~~~~-----------------------~------~~~~~  291 (314)
                      +......+|.+.|.+++|  +|++..|++++.||+ ++|..+.-.                       .      .+.+.
T Consensus       256 ~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~  334 (588)
T 2j04_A          256 SISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYETTLVIH  334 (588)
T ss_dssp             EEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEE
T ss_pred             eEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeeccceEEE
Confidence            443333389999999999  999999999999999 888864110                       0      11245


Q ss_pred             eeeecCCCceeceeeccccccC
Q 021291          292 GFVCDQEGNKFGTTWHIRHLNS  313 (314)
Q Consensus       292 ~~~~~~~~~~~~~~w~~~~~~~  313 (314)
                      +.+++|+|..++....+ +.|+
T Consensus       335 ~va~SPdG~~lA~~~~i-~~~~  355 (588)
T 2j04_A          335 GISLSPDGYSIAIVYDM-ERVA  355 (588)
T ss_dssp             EEEECTTSSEEEEEEEE-ECSS
T ss_pred             EEEECCCCCEEEEEEec-cCce
Confidence            57788888888887666 5553

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.96  E-value=1.1e-27  Score=198.41  Aligned_cols=262  Identities=8%  Similarity=0.031  Sum_probs=178.1

Q ss_pred             CCceeEEEEccCCCEEEEecCCC-------eEEEEeCCCCe--------EEE--EEeccCCcccEEEEEEcccCCCCeEE
Q 021291           18 RASVTDVCFHQTKPILFAGTTGG-------ELRIWDTVQHR--------TVS--SSWVHSAAHGIVSVATGPSIGLNKVI   80 (314)
Q Consensus        18 ~~~v~~~~~~~~~~~l~s~~~dg-------~v~iwd~~~~~--------~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~   80 (314)
                      .-||++++|+||+++|++|+.|.       .|++|++..+.        ...  .+..|.  ..|.++++..    +.++
T Consensus        14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~--~~v~s~~~~~----~~~~   87 (365)
T 4h5i_A           14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDND--DSPTAIDASK----GIIL   87 (365)
T ss_dssp             SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTS--CCCCEEEEET----TEEE
T ss_pred             CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCC--CceEEEEeCC----CEEE
Confidence            45899999999999999987543       59999987542        112  344555  4588888765    4555


Q ss_pred             Ee-----------ecCCeEEEEeCCCCCCCCCCeeeee-------cceeeEEEeeeeecccccc-ccCCCCcceeeccCC
Q 021291           81 SQ-----------GRDGTVKCWDIENGGLSSNPSLTIK-------TNSYHFCKLSLVKEPYANA-KQANEPKDCYEREVG  141 (314)
Q Consensus        81 s~-----------~~dg~v~iwd~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  141 (314)
                      ++           +.|+++++|++.......+......       ......+.|++.+...... ....+...+|++...
T Consensus        88 ~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~  167 (365)
T 4h5i_A           88 VGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDL  167 (365)
T ss_dssp             EECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTT
T ss_pred             EEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC
Confidence            54           4578899999876542111111111       0112344555554443322 223456788888877


Q ss_pred             ceeeecCCCCCC---ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCC
Q 021291          142 ETVDTDSLCDSK---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKS  218 (314)
Q Consensus       142 ~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~  218 (314)
                      ....... .+..   ++|+|+|+.++  +++ ++.+.+|+..+++.+......      +|    ...+.++. |+|+  
T Consensus       168 ~~~~~~~-~~~~V~~v~fspdg~~l~--s~s-~~~~~~~~~~~~~~~~~~~~~------~~----~~~v~~v~-fspd--  230 (365)
T 4h5i_A          168 TEKFEIE-TRGEVKDLHFSTDGKVVA--YIT-GSSLEVISTVTGSCIARKTDF------DK----NWSLSKIN-FIAD--  230 (365)
T ss_dssp             EEEEEEE-CSSCCCEEEECTTSSEEE--EEC-SSCEEEEETTTCCEEEEECCC------CT----TEEEEEEE-EEET--
T ss_pred             cEEEEeC-CCCceEEEEEccCCceEE--ecc-ceeEEEEEeccCcceeeeecC------CC----CCCEEEEE-EcCC--
Confidence            6554432 2222   99999997544  455 466788888777765443310      33    45678887 9998  


Q ss_pred             CCceEEEEeecCC----cEEEEEccCCCC---ceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe--
Q 021291          219 QGFVNVLAGYEDG----SILVWDIRNPGI---PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF--  289 (314)
Q Consensus       219 ~g~~~l~~g~~dg----~i~vwd~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~--  289 (314)
                       +. ++++++.|+    .+++||+.....   ....+.+|..+|++++|+|+|++||+|+.|+.|+|||+++++.+..  
T Consensus       231 -g~-~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~  308 (365)
T 4h5i_A          231 -DT-VLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFK  308 (365)
T ss_dssp             -TE-EEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEET
T ss_pred             -CC-EEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEec
Confidence             55 888888777    688899876222   2345778999999999999999999999999999999999988764  


Q ss_pred             ------eeeeeecCCCceece
Q 021291          290 ------GIGFVCDQEGNKFGT  304 (314)
Q Consensus       290 ------~~~~~~~~~~~~~~~  304 (314)
                            +..++++|+|..+++
T Consensus       309 ~gH~~~V~~v~fSpdg~~laS  329 (365)
T 4h5i_A          309 QAHSFAITEVTISPDSTYVAS  329 (365)
T ss_dssp             TSSSSCEEEEEECTTSCEEEE
T ss_pred             CcccCCEEEEEECCCCCEEEE
Confidence                  345678899988776

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.4e-28  Score=206.42  Aligned_cols=217  Identities=6%  Similarity=0.054  Sum_probs=157.4

Q ss_pred             cCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeE-----------------------------EEEEe-ccCCccc
Q 021291           15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT-----------------------------VSSSW-VHSAAHG   64 (314)
Q Consensus        15 ~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-----------------------------~~~~~-~~~~~~~   64 (314)
                      +.-...|.+++|+|||+++||++.|++|+  |...++.                             ...+. .|.  ..
T Consensus        12 ~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~--~~   87 (588)
T 2j04_A           12 KEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPV--CY   87 (588)
T ss_dssp             CCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCS--CC
T ss_pred             hHhhccEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCC--Cc
Confidence            45568999999999999999999999995  4333221                             11111 233  56


Q ss_pred             EEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeee-cc-----eeeEEEeeeeeccccccccCCCCcceeec
Q 021291           65 IVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIK-TN-----SYHFCKLSLVKEPYANAKQANEPKDCYER  138 (314)
Q Consensus        65 v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (314)
                      |.+++|+|  +|..|++++.||+|++||.++  +    ...+. ..     ... +                        
T Consensus        88 V~~vawSP--dG~~LAs~s~dg~V~iwd~~~--~----l~~l~~~~~~~~~sv~-s------------------------  134 (588)
T 2j04_A           88 PRVCKPSP--IDDWMAVLSNNGNVSVFKDNK--M----LTNLDSKGNLSSRTYH-C------------------------  134 (588)
T ss_dssp             EEEEEECS--SSSCEEEEETTSCEEEEETTE--E----EEECCCSSCSTTTCEE-E------------------------
T ss_pred             EEEEEECC--CCCEEEEEeCCCcEEEEeCCc--e----eeeccCCCccccccEE-E------------------------
Confidence            99999999  999999999999999999543  1    11111 10     011 1                        


Q ss_pred             cCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCce-------eeeecccccCCCCCcCCCCCceeeeEE
Q 021291          139 EVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAER-------CTRLHQNSCGGSPNFSSKGRGMCMAVQ  211 (314)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~-------~~~~~~~~~~~~~~h~~~~~~~~~~~~  211 (314)
                                     ++|+|+|+.++  +|+.||+|++||+.++..       +.++.        .|...+...+.+++
T Consensus       135 ---------------vafSPDG~~LA--sgs~DGtVkIWd~~~~~l~~~~~i~l~ti~--------~~~~gh~~~V~sVa  189 (588)
T 2j04_A          135 ---------------FEWNPIESSIV--VGNEDGELQFFSIRKNSENTPEFYFESSIR--------LSDAGSKDWVTHIV  189 (588)
T ss_dssp             ---------------EEECSSSSCEE--EEETTSEEEEEECCCCTTTCCCCEEEEEEE--------CSCTTCCCCEEEEE
T ss_pred             ---------------EEEcCCCCEEE--EEcCCCEEEEEECCCCccccccceeeeeee--------cccccccccEEEEE
Confidence                           67999998655  577799999999998753       45554        33333456899998


Q ss_pred             EecCCCCCCceEEEEeecCCcEEEEEccCCCC---ceEee-ecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeee
Q 021291          212 AYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI---PLTAM-KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYV  287 (314)
Q Consensus       212 ~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~---~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~  287 (314)
                       |+|+   |   +++++.|+.|++||+.. +.   ...++ .+|...|.+++|+  +..|++++ ++.|++||+..++..
T Consensus       190 -wSPd---g---Laass~D~tVrlWd~~~-~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~  258 (588)
T 2j04_A          190 -WYED---V---LVAALSNNSVFSMTVSA-SSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSIS  258 (588)
T ss_dssp             -EETT---E---EEEEETTCCEEEECCCS-SSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEE
T ss_pred             -EcCC---c---EEEEeCCCeEEEEECCC-CccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEE
Confidence             9997   4   78888999999999987 44   23566 4888999999999  57889887 699999999988873


Q ss_pred             Eee-------eeeee--cCCCceece
Q 021291          288 LFG-------IGFVC--DQEGNKFGT  304 (314)
Q Consensus       288 ~~~-------~~~~~--~~~~~~~~~  304 (314)
                      ...       ..+++  +|++..++.
T Consensus       259 ~~~~gh~~~V~~va~~~s~d~~~La~  284 (588)
T 2j04_A          259 SLKTGSLENFHIIPLNHEKESTILLM  284 (588)
T ss_dssp             EEECSCCSCCCEEEETTCSSCEEEEE
T ss_pred             EEEcCCCceEEEEEeeeCCCCCEEEE
Confidence            322       22345  677655544

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=1.3e-28  Score=206.00  Aligned_cols=237  Identities=14%  Similarity=0.097  Sum_probs=142.9

Q ss_pred             CCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEE-----EEeccCCcccEEEEEEccc------CCCCeEEEeecC
Q 021291           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVS-----SSWVHSAAHGIVSVATGPS------IGLNKVISQGRD   85 (314)
Q Consensus        17 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-----~~~~~~~~~~v~~~~~~~~------~~~~~l~s~~~d   85 (314)
                      |...+....+.+++.+|++|+.|++|+|||+++++...     .+.+|..  .|.+++|+|.      .++++|++++.|
T Consensus        88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~--~v~~v~~~p~~~~~~~~d~~~las~s~D  165 (393)
T 4gq1_A           88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHN--FVNDIDIADVYSADNRLAEQVIASVGDD  165 (393)
T ss_dssp             ---------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSS--CEEEEEEEEEECTTCSEEEEEEEEEETT
T ss_pred             cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCC--ceEEEEEccccccccCCCCCEEEEEECC
Confidence            44444444555577789999999999999999886543     2457774  4999999872      257899999999


Q ss_pred             CeEEEEeCCCCCCCCCCeeeeecce-eeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceE
Q 021291           86 GTVKCWDIENGGLSSNPSLTIKTNS-YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM  164 (314)
Q Consensus        86 g~v~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (314)
                      ++|+|||++++....    ....+. ...+                                       ++|+|++..++
T Consensus       166 ~tv~~Wd~~~~~~~~----~~~~~~~~v~~---------------------------------------v~~~p~~~~~l  202 (393)
T 4gq1_A          166 CTLIIWRLTDEGPIL----AGYPLSSPGIS---------------------------------------VQFRPSNPNQL  202 (393)
T ss_dssp             SEEEEEEEETTEEEE----EEEECSSCEEE---------------------------------------EEEETTEEEEE
T ss_pred             CeEEEEECCCCceee----eecCCCCCcEE---------------------------------------EEECCCCCceE
Confidence            999999998764321    111111 1111                                       56899887666


Q ss_pred             EEeecCcCeEEEEecCCCceeeeeccccc-------------CCCCCcCCCCCceeeeEEEec-CCCCCCceEEEEeecC
Q 021291          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSC-------------GGSPNFSSKGRGMCMAVQAYL-PSKSQGFVNVLAGYED  230 (314)
Q Consensus       165 ~~~g~~d~~i~vwd~~~~~~~~~~~~~~~-------------~~~~~h~~~~~~~~~~~~~~~-p~~~~g~~~l~~g~~d  230 (314)
                      + +|+.|++|++||+++++..........             .............+.++. |. |+   +. .+++++.|
T Consensus       203 ~-~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~-~~~~d---g~-~l~s~s~d  276 (393)
T 4gq1_A          203 I-VGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVR-WIGSD---GS-GILAMCKS  276 (393)
T ss_dssp             E-EEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEE-EETTT---TC-EEEEECTT
T ss_pred             E-ecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeee-eecCC---CC-EEEEEeCC
Confidence            5 677799999999998765443321000             000000111234556666 65 55   55 89999999


Q ss_pred             CcEEEEEccCCCCceEeeecCCcceEEEEEe--------------------CCCCeEEEecCCCcEEEEecCCCeeeEe-
Q 021291          231 GSILVWDIRNPGIPLTAMKVHLEPVLCLSID--------------------ESCNGGISGGADQKIVLYNLDHSTYVLF-  289 (314)
Q Consensus       231 g~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~--------------------~~~~~l~s~s~dg~i~iw~~~~~~~~~~-  289 (314)
                      +.+++||+.. ++....+..|...+..+.+.                    .++.++++|+.||.|++||+.+++.... 
T Consensus       277 ~~i~vwd~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~  355 (393)
T 4gq1_A          277 GAWLRWNLFA-NNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIP  355 (393)
T ss_dssp             SEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEE
T ss_pred             CCEEEEECcc-CCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEe
Confidence            9999999987 55555555555544444332                    2455778899999999999999877654 


Q ss_pred             ------eeeeeecCCCceecee
Q 021291          290 ------GIGFVCDQEGNKFGTT  305 (314)
Q Consensus       290 ------~~~~~~~~~~~~~~~~  305 (314)
                            +..++++|+|..++..
T Consensus       356 ~~~~~~V~svafspdG~~LA~a  377 (393)
T 4gq1_A          356 IQLGMPIVDFCWHQDGSHLAIA  377 (393)
T ss_dssp             EECSSCEEEEEECTTSSEEEEE
T ss_pred             cCCCCcEEEEEEcCCCCEEEEE
Confidence                  4557788999888764

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.96  E-value=5.8e-28  Score=205.45  Aligned_cols=250  Identities=10%  Similarity=0.112  Sum_probs=176.5

Q ss_pred             CceEEecCCC------------CceeEEEEccCC--CEEEEecCCCeEEEEeCCCCeEE---------------------
Q 021291            9 DPVAVLRGHR------------ASVTDVCFHQTK--PILFAGTTGGELRIWDTVQHRTV---------------------   53 (314)
Q Consensus         9 ~~~~~l~~h~------------~~v~~~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~---------------------   53 (314)
                      +++..+.+|.            +.|++++|+|++  .+|++++.||.|++||+.+++..                     
T Consensus        72 ~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  151 (447)
T 3dw8_B           72 NVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTT  151 (447)
T ss_dssp             EEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCS
T ss_pred             eEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccc
Confidence            3588999998            889999999988  79999999999999998764432                     


Q ss_pred             ------------------EE-EeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCC-CCC-----CCeeeeec
Q 021291           54 ------------------SS-SWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG-LSS-----NPSLTIKT  108 (314)
Q Consensus        54 ------------------~~-~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-~~~-----~~~~~~~~  108 (314)
                                        .. ..+|.  ..|.+++|+|  ++++|++| .|++|++||+++.. ...     ...+..+.
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  226 (447)
T 3dw8_B          152 LRVPVFRPMDLMVEASPRRIFANAHT--YHINSISINS--DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELT  226 (447)
T ss_dssp             CCCCEEEEEEEEEEEEEEEEECSCCS--SCCCEEEECT--TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCC
T ss_pred             eEeccccchheeeeccceEEeccCCC--cceEEEEEcC--CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccC
Confidence                              12 24566  4599999999  99999998 79999999998432 111     00011223


Q ss_pred             ceeeEEEeeeeeccccccccCCCCcceeeccCCcee---eecCCCCC-------------C---ceeccCCCceEEEeec
Q 021291          109 NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETV---DTDSLCDS-------------K---DDVPAEGPKYMAVAGE  169 (314)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-------------~---~~~~~~~~~~~~~~g~  169 (314)
                      .......+++............+...+|+++.....   ...+..|.             .   ++|+|+++.++  +++
T Consensus       227 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~--~~~  304 (447)
T 3dw8_B          227 EVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMM--TRD  304 (447)
T ss_dssp             CCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEE--EEE
T ss_pred             cceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEE--Eee
Confidence            334445555444334445556677888988776531   22333332             3   89999987554  566


Q ss_pred             CcCeEEEEecCC-CceeeeecccccCCCCCcCCCCCc-----------eeeeEEEecCCCCCCceEEEEeecCCcEEEEE
Q 021291          170 QLSEVEIWDLNT-AERCTRLHQNSCGGSPNFSSKGRG-----------MCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD  237 (314)
Q Consensus       170 ~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~h~~~~~~-----------~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd  237 (314)
                      . +.|++||+++ ++.+..+.        +|......           .+..+. |+|+   +. +|++|+.||.|++||
T Consensus       305 ~-~~v~iwd~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~i~~~~~~~-~s~~---~~-~l~s~s~dg~v~iwd  370 (447)
T 3dw8_B          305 Y-LSVKVWDLNMENRPVETYQ--------VHEYLRSKLCSLYENDCIFDKFECC-WNGS---DS-VVMTGSYNNFFRMFD  370 (447)
T ss_dssp             S-SEEEEEETTCCSSCSCCEE--------SCGGGTTTHHHHHHTSGGGCCCCEE-ECTT---SS-EEEEECSTTEEEEEE
T ss_pred             C-CeEEEEeCCCCccccceee--------ccccccccccccccccccccceEEE-ECCC---CC-EEEEeccCCEEEEEE
Confidence            5 9999999997 77777777        55321110           123366 9998   55 899999999999999


Q ss_pred             ccCCCCceEeeec---------------------------------CCcceEEEEEeCCCCeEEEecCCCcEEEEecC
Q 021291          238 IRNPGIPLTAMKV---------------------------------HLEPVLCLSIDESCNGGISGGADQKIVLYNLD  282 (314)
Q Consensus       238 ~~~~~~~~~~~~~---------------------------------h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~  282 (314)
                      +.+ ++.+ .+.+                                 +...|..++|+|++.+|++++.++ +++|.-+
T Consensus       371 ~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~  445 (447)
T 3dw8_B          371 RNT-KRDI-TLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK  445 (447)
T ss_dssp             TTT-CCEE-EEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred             cCC-Ccce-eeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence            987 5443 3222                                 345788999999999999998876 7777643

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.96  E-value=2.5e-27  Score=190.86  Aligned_cols=229  Identities=12%  Similarity=0.092  Sum_probs=159.7

Q ss_pred             EEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeee-ccccccccCCCCc
Q 021291           55 SSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK-EPYANAKQANEPK  133 (314)
Q Consensus        55 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  133 (314)
                      .+.+|..  .|.+++|+|  ++++|++|+.|++|+|||+.+........+..+........++... ..........+..
T Consensus         4 ~~~~h~~--~V~~~~~s~--~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v   79 (297)
T 2pm7_B            4 IANAHNE--MIHDAVMDY--YGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV   79 (297)
T ss_dssp             ECCSCSS--CEEEEEECT--TSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEE
T ss_pred             eccCCcC--ceEEEEECC--CCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEE
Confidence            4567874  499999999  9999999999999999999754321111233333344444443321 2233444556778


Q ss_pred             ceeeccCCc-eeeecCCCCCC----ceeccC--CCceEEEeecCcCeEEEEecCCCce--eeeecccccCCCCCcCCCCC
Q 021291          134 DCYEREVGE-TVDTDSLCDSK----DDVPAE--GPKYMAVAGEQLSEVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGR  204 (314)
Q Consensus       134 ~~~~~~~~~-~~~~~~~~~~~----~~~~~~--~~~~~~~~g~~d~~i~vwd~~~~~~--~~~~~~~~~~~~~~h~~~~~  204 (314)
                      .+|++.... .....+.+|..    ++|+|+  +. +++ +++.|+.|++||++++..  ...+.        +|    .
T Consensus        80 ~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~-~l~-s~s~d~~v~~wd~~~~~~~~~~~~~--------~h----~  145 (297)
T 2pm7_B           80 MIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-MLL-VASSDGKVSVVEFKENGTTSPIIID--------AH----A  145 (297)
T ss_dssp             EEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCS-EEE-EEETTSEEEEEEBCSSSCBCCEEEE--------CC----S
T ss_pred             EEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCc-EEE-EEECCCcEEEEEecCCCceeeeeee--------cc----c
Confidence            888887653 22333455655    889997  54 333 677799999999987642  23344        55    4


Q ss_pred             ceeeeEEEecCCCC----------CCceEEEEeecCCcEEEEEccCCCC----ceEeeecCCcceEEEEEeCCC---CeE
Q 021291          205 GMCMAVQAYLPSKS----------QGFVNVLAGYEDGSILVWDIRNPGI----PLTAMKVHLEPVLCLSIDESC---NGG  267 (314)
Q Consensus       205 ~~~~~~~~~~p~~~----------~g~~~l~~g~~dg~i~vwd~~~~~~----~~~~~~~h~~~v~~~~~~~~~---~~l  267 (314)
                      ..+.++. |+|+..          +++ +|++|+.|+.|++||++. +.    +...+.+|...|.+++|+|++   .+|
T Consensus       146 ~~v~~~~-~~p~~~~~~~~~~~~~~~~-~l~sgs~D~~v~lwd~~~-~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~l  222 (297)
T 2pm7_B          146 IGVNSAS-WAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNS-DAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYM  222 (297)
T ss_dssp             SCEEEEE-ECCCC------------CC-EEEEEETTSCEEEEEEET-TTTEEEEEEEECCCSSCEEEEEECCCCSSSEEE
T ss_pred             CccceEe-ecCCcccccccCCCCCCcc-eEEEEcCCCcEEEEEEcC-CCceEEEEEEecCCCCceEEEEECCCCCCceEE
Confidence            4678887 999631          134 899999999999999987 44    556788999999999999984   789


Q ss_pred             EEecCCCcEEEEecCCCe-----eeE-------eeeeeeecCCCceece
Q 021291          268 ISGGADQKIVLYNLDHST-----YVL-------FGIGFVCDQEGNKFGT  304 (314)
Q Consensus       268 ~s~s~dg~i~iw~~~~~~-----~~~-------~~~~~~~~~~~~~~~~  304 (314)
                      ++++.|+.|++||++.+.     .+.       .+...+++|+|..+++
T Consensus       223 as~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las  271 (297)
T 2pm7_B          223 ASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLAL  271 (297)
T ss_dssp             EEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEE
T ss_pred             EEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEE
Confidence            999999999999998743     111       1334567788776654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=5.6e-28  Score=198.62  Aligned_cols=212  Identities=11%  Similarity=0.126  Sum_probs=151.7

Q ss_pred             CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCC---------CCeEEEEEe-ccCCcccEEEEEEcccCCCCe
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTV---------QHRTVSSSW-VHSAAHGIVSVATGPSIGLNK   78 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~---------~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~   78 (314)
                      +.+..+.  ...|.++.|+|+   +++++.|++|++|+..         +++.+..+. .|.  ..|.+++|+|..++++
T Consensus        69 ~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~  141 (343)
T 3lrv_A           69 KTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSA--NEIIYMYGHNEVNTEY  141 (343)
T ss_dssp             SCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCS--SCEEEEECCC---CCE
T ss_pred             cEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCC--CCEEEEEcCCCCCCCE
Confidence            4444444  467888888887   9999999999999765         444454444 444  4599999998545689


Q ss_pred             EEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceecc
Q 021291           79 VISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPA  158 (314)
Q Consensus        79 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (314)
                      |++++.||+|++||+++++...  ...........+                                       ++|+|
T Consensus       142 l~s~s~dg~i~~wd~~~~~~~~--~~~~~~~~~i~~---------------------------------------~~~~p  180 (343)
T 3lrv_A          142 FIWADNRGTIGFQSYEDDSQYI--VHSAKSDVEYSS---------------------------------------GVLHK  180 (343)
T ss_dssp             EEEEETTCCEEEEESSSSCEEE--EECCCSSCCCCE---------------------------------------EEECT
T ss_pred             EEEEeCCCcEEEEECCCCcEEE--EEecCCCCceEE---------------------------------------EEECC
Confidence            9999999999999999876421  110010000000                                       67999


Q ss_pred             CCCceEEEeecCcCeEEEEecCCCcee-eeecccccCCCCC-cCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEE
Q 021291          159 EGPKYMAVAGEQLSEVEIWDLNTAERC-TRLHQNSCGGSPN-FSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW  236 (314)
Q Consensus       159 ~~~~~~~~~g~~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~-h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vw  236 (314)
                      ++..+  ++|+.|+.|++||+++++.+ ..+.        + |    ...+.++. |+|+   |. +|++++ |+.|++|
T Consensus       181 dg~~l--asg~~dg~i~iwd~~~~~~~~~~~~--------~~h----~~~v~~l~-fs~~---g~-~l~s~~-~~~v~iw  240 (343)
T 3lrv_A          181 DSLLL--ALYSPDGILDVYNLSSPDQASSRFP--------VDE----EAKIKEVK-FADN---GY-WMVVEC-DQTVVCF  240 (343)
T ss_dssp             TSCEE--EEECTTSCEEEEESSCTTSCCEECC--------CCT----TSCEEEEE-ECTT---SS-EEEEEE-SSBEEEE
T ss_pred             CCCEE--EEEcCCCEEEEEECCCCCCCccEEe--------ccC----CCCEEEEE-EeCC---CC-EEEEEe-CCeEEEE
Confidence            98643  36778999999999999877 6666        4 6    45788998 9998   55 889988 5599999


Q ss_pred             EccCCCCceEeeec---CCcceE--EEEEeCCCCeEEEecC-CCcEEEEecCCCeeeEe
Q 021291          237 DIRNPGIPLTAMKV---HLEPVL--CLSIDESCNGGISGGA-DQKIVLYNLDHSTYVLF  289 (314)
Q Consensus       237 d~~~~~~~~~~~~~---h~~~v~--~~~~~~~~~~l~s~s~-dg~i~iw~~~~~~~~~~  289 (314)
                      |+++ .+.+..+..   |...+.  +++|+|++++|++++. |+.|++|+++.....+.
T Consensus       241 d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~  298 (343)
T 3lrv_A          241 DLRK-DVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWT  298 (343)
T ss_dssp             ETTS-STTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEE
T ss_pred             EcCC-CCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceE
Confidence            9998 555544443   444444  6999999999999988 99999999977655443

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.96  E-value=1.1e-26  Score=188.56  Aligned_cols=215  Identities=15%  Similarity=0.237  Sum_probs=154.6

Q ss_pred             CCCceEEec--CCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCC-----------------------
Q 021291            7 PPDPVAVLR--GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA-----------------------   61 (314)
Q Consensus         7 ~~~~~~~l~--~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-----------------------   61 (314)
                      .+++++.++  +|...|++++|+|++++|++|+.||+|++||+++++++..+.+|..                       
T Consensus        54 tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~  133 (318)
T 4ggc_A           54 SGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHH  133 (318)
T ss_dssp             TCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEE
T ss_pred             CCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEe
Confidence            346666554  6888999999999999999999999999999999887665543321                       


Q ss_pred             ----------------cccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecce--eeEEEeeeeeccc
Q 021291           62 ----------------AHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNS--YHFCKLSLVKEPY  123 (314)
Q Consensus        62 ----------------~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  123 (314)
                                      ...+..+.+.+  ++++|++++.|++|++||+++++.............  .....+.+.....
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  211 (318)
T 4ggc_A          134 HDVRVAEHHVATLSGHSQEVCGLRWAP--DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNV  211 (318)
T ss_dssp             EETTSSSCEEEEEECCSSCEEEEEECT--TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTE
T ss_pred             eecCCCceeEEEEcCccCceEEEEEcC--CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcE
Confidence                            13377777888  889999999999999999998765433222222222  2222222222111


Q ss_pred             cc--cccCCCCcceeeccCCceeeecCCCCCC--ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCc
Q 021291          124 AN--AKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNF  199 (314)
Q Consensus       124 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h  199 (314)
                      ..  .........+|+................  +.|+++++.+++++|+.|+.|++||+++++++..+.        +|
T Consensus       212 ~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~--------gH  283 (318)
T 4ggc_A          212 LATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK--------GH  283 (318)
T ss_dssp             EEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC--------CC
T ss_pred             EEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEc--------CC
Confidence            11  1122234556666665544433322222  889999998888778889999999999999999998        78


Q ss_pred             CCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccC
Q 021291          200 SSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (314)
Q Consensus       200 ~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~  240 (314)
                          ...+.+++ |+|+   |+ +|++|+.||+|+|||+..
T Consensus       284 ----~~~V~~l~-~spd---g~-~l~S~s~D~~v~iWd~~~  315 (318)
T 4ggc_A          284 ----TSRVLSLT-MSPD---GA-TVASAAADETLRLWRCFE  315 (318)
T ss_dssp             ----SSCEEEEE-ECTT---SS-CEEEEETTTEEEEECCSC
T ss_pred             ----CCCEEEEE-EcCC---CC-EEEEEecCCeEEEEECCC
Confidence                45788898 9998   55 899999999999999976

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=9.5e-27  Score=197.23  Aligned_cols=269  Identities=8%  Similarity=0.016  Sum_probs=194.6

Q ss_pred             CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEE-----eccCCcccEEEEEEcccCCCCeEEEee
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSS-----WVHSAAHGIVSVATGPSIGLNKVISQG   83 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (314)
                      +.+..+..+ ..+.+++|+|++.++++++.|+.|++||+.+++....+     .+|.  ..|.+++|+|  ++.++++++
T Consensus       114 ~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~~~s~~  188 (433)
T 3bws_A          114 RFISRFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKL--GFVETISIPE--HNELWVSQM  188 (433)
T ss_dssp             EEEEEEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTC--CEEEEEEEGG--GTEEEEEEG
T ss_pred             eEEEEEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccC--CceeEEEEcC--CCEEEEEEC
Confidence            345555544 44669999998888899999999999999999887633     3455  4599999999  889999999


Q ss_pred             cCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC---ceeccCC
Q 021291           84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK---DDVPAEG  160 (314)
Q Consensus        84 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  160 (314)
                      .|+.|++||+++++...  .+..+........+++............+...+|++........ +..+..   ++|+|++
T Consensus       189 ~d~~v~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~g  265 (433)
T 3bws_A          189 QANAVHVFDLKTLAYKA--TVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRK-TDKIGLPRGLLLSKDG  265 (433)
T ss_dssp             GGTEEEEEETTTCCEEE--EEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE-CCCCSEEEEEEECTTS
T ss_pred             CCCEEEEEECCCceEEE--EEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEE-ecCCCCceEEEEcCCC
Confidence            99999999999876533  22222333344444443333323333455677788776654332 333333   8999999


Q ss_pred             CceEEEeec------CcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEE
Q 021291          161 PKYMAVAGE------QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL  234 (314)
Q Consensus       161 ~~~~~~~g~------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~  234 (314)
                      +.+++++..      .|+.|++||+++++....+.         |    ...+..+. |+|+   ++.++++++.|+.|+
T Consensus       266 ~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~---------~----~~~~~~~~-~~~~---g~~l~~~~~~~~~v~  328 (433)
T 3bws_A          266 KELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG---------P----PGNKRHIV-SGNT---ENKIYVSDMCCSKIE  328 (433)
T ss_dssp             SEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE---------E----EECEEEEE-ECSS---TTEEEEEETTTTEEE
T ss_pred             CEEEEEECCCCccccCCCeEEEEECCCCcEEeecc---------C----CCCcceEE-ECCC---CCEEEEEecCCCEEE
Confidence            876653321      37899999999988776654         2    22566776 9998   544678889999999


Q ss_pred             EEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecC---------------CCcEEEEecCCCeeeEe------eeee
Q 021291          235 VWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA---------------DQKIVLYNLDHSTYVLF------GIGF  293 (314)
Q Consensus       235 vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~---------------dg~i~iw~~~~~~~~~~------~~~~  293 (314)
                      +||+++ ++.+..+. +...+.+++|+|++++|++++.               ||.|++||+.+++.+..      ...+
T Consensus       329 v~d~~~-~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~  406 (433)
T 3bws_A          329 VYDLKE-KKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGL  406 (433)
T ss_dssp             EEETTT-TEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEE
T ss_pred             EEECCC-CcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceE
Confidence            999997 77777665 6788999999999998887776               57999999999887664      3456


Q ss_pred             eecCCCceece
Q 021291          294 VCDQEGNKFGT  304 (314)
Q Consensus       294 ~~~~~~~~~~~  304 (314)
                      +++|+|..+..
T Consensus       407 ~~s~dg~~l~~  417 (433)
T 3bws_A          407 DVSPDNRYLVI  417 (433)
T ss_dssp             EECTTSCEEEE
T ss_pred             EEcCCCCEEEE
Confidence            67788876643

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=2.6e-26  Score=194.55  Aligned_cols=242  Identities=11%  Similarity=0.017  Sum_probs=177.1

Q ss_pred             EecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEE-EeecCCeEEEE
Q 021291           13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCW   91 (314)
Q Consensus        13 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~v~iw   91 (314)
                      .+.+|.+.|.+++|+++++++++++.|+.|++||+++++.+..+..|..  .+.+++|+|  +++.++ +++.|+.|++|
T Consensus       164 ~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~l~~~~~~~~~i~~~  239 (433)
T 3bws_A          164 KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGK--WSKILLYDP--IRDLVYCSNWISEDISVI  239 (433)
T ss_dssp             HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSS--SEEEEEEET--TTTEEEEEETTTTEEEEE
T ss_pred             cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCC--CeeEEEEcC--CCCEEEEEecCCCcEEEE
Confidence            4568999999999999999999999999999999999999998887774  499999999  888775 55579999999


Q ss_pred             eCCCCCCCCCCeeeeecc-eeeEEEeeeeecccccccc-------CCCCcceeeccCCceeeecC-CCCC-CceeccCCC
Q 021291           92 DIENGGLSSNPSLTIKTN-SYHFCKLSLVKEPYANAKQ-------ANEPKDCYEREVGETVDTDS-LCDS-KDDVPAEGP  161 (314)
Q Consensus        92 d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~  161 (314)
                      |+++++...    .+... ......+++..........       ..+...+|++...+...... .... .++|+|+++
T Consensus       240 d~~~~~~~~----~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~  315 (433)
T 3bws_A          240 DRKTKLEIR----KTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTEN  315 (433)
T ss_dssp             ETTTTEEEE----ECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTT
T ss_pred             ECCCCcEEE----EecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCC
Confidence            999876432    22221 2222333333222222221       12345577776654433221 1111 189999998


Q ss_pred             ceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeec------------
Q 021291          162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE------------  229 (314)
Q Consensus       162 ~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~------------  229 (314)
                      .+++ +++.|+.|++||+.+++....+..             ...+.+++ |+|+   |+ ++++++.            
T Consensus       316 ~l~~-~~~~~~~v~v~d~~~~~~~~~~~~-------------~~~~~~~~-~s~d---g~-~l~~~~~~~~~~~~~~~~~  376 (433)
T 3bws_A          316 KIYV-SDMCCSKIEVYDLKEKKVQKSIPV-------------FDKPNTIA-LSPD---GK-YLYVSCRGPNHPTEGYLKK  376 (433)
T ss_dssp             EEEE-EETTTTEEEEEETTTTEEEEEEEC-------------SSSEEEEE-ECTT---SS-EEEEEECCCCCTTTCTTSC
T ss_pred             EEEE-EecCCCEEEEEECCCCcEEEEecC-------------CCCCCeEE-EcCC---CC-EEEEEecCCCccccccccc
Confidence            7765 566789999999999888777652             33567787 9998   55 6666655            


Q ss_pred             ---CCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecC-CCcEEEEecCC
Q 021291          230 ---DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA-DQKIVLYNLDH  283 (314)
Q Consensus       230 ---dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-dg~i~iw~~~~  283 (314)
                         ||.|++||+.+ ++.+..+.. ...+.+++|+|++++|++++. |+.|++|+++.
T Consensus       377 g~~dg~v~~~d~~~-~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          377 GLVLGKVYVIDTTT-DTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             CSSCCEEEEEETTT-TEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             cccceEEEEEECCC-CcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence               57999999988 777777776 567899999999999887764 99999999863

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.95  E-value=4e-27  Score=191.25  Aligned_cols=230  Identities=12%  Similarity=0.081  Sum_probs=156.2

Q ss_pred             EEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeee--cceeeEEEeeee-eccccccccCCC
Q 021291           55 SSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIK--TNSYHFCKLSLV-KEPYANAKQANE  131 (314)
Q Consensus        55 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~  131 (314)
                      .+.+|..  .|.+++|+|  ++++|++|+.|++|++||++++....  ...+.  ........++.. ...........+
T Consensus         8 ~~~~H~~--~V~~v~~s~--~g~~lasgs~D~~v~lwd~~~~~~~~--~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~   81 (316)
T 3bg1_A            8 VDTSHED--MIHDAQMDY--YGTRLATCSSDRSVKIFDVRNGGQIL--IADLRGHEGPVWQVAWAHPMYGNILASCSYDR   81 (316)
T ss_dssp             ------C--CEEEEEECG--GGCEEEEEETTTEEEEEEEETTEEEE--EEEEECCSSCEEEEEECCGGGSSCEEEEETTS
T ss_pred             ecccccC--eEEEeeEcC--CCCEEEEEeCCCeEEEEEecCCCcEE--EEEEcCCCccEEEEEeCCCCCCCEEEEEECCC
Confidence            3457874  499999999  99999999999999999998764211  22333  334444444332 123344455567


Q ss_pred             CcceeeccCCc-eeeecCCCCCC----ceeccCCCceEEEeecCcCeEEEEecCCCcee---eeecccccCCCCCcCCCC
Q 021291          132 PKDCYEREVGE-TVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERC---TRLHQNSCGGSPNFSSKG  203 (314)
Q Consensus       132 ~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~---~~~~~~~~~~~~~h~~~~  203 (314)
                      ...+|++.... .....+.+|..    ++|+|++...++++|+.|+.|++||++.+...   ..+.        +|    
T Consensus        82 ~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~--------~h----  149 (316)
T 3bg1_A           82 KVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINN--------AH----  149 (316)
T ss_dssp             CEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTT--------SS----
T ss_pred             EEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeec--------cc----
Confidence            78888887653 23344566665    89999842223347888999999999876422   2222        55    


Q ss_pred             CceeeeEEEecCCCC--------------CCceEEEEeecCCcEEEEEccCCC--CceEeeecCCcceEEEEEeCCC---
Q 021291          204 RGMCMAVQAYLPSKS--------------QGFVNVLAGYEDGSILVWDIRNPG--IPLTAMKVHLEPVLCLSIDESC---  264 (314)
Q Consensus       204 ~~~~~~~~~~~p~~~--------------~g~~~l~~g~~dg~i~vwd~~~~~--~~~~~~~~h~~~v~~~~~~~~~---  264 (314)
                      ...+.++. |+|+..              .++ +|++|+.|+.|++||++..+  .++..+.+|...|.+++|+|++   
T Consensus       150 ~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~  227 (316)
T 3bg1_A          150 TIGCNAVS-WAPAVVPGSLIDHPSGQKPNYIK-RFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLP  227 (316)
T ss_dssp             SSCBCCCE-ECCCCCC------CCSCCCCCCC-BEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCS
T ss_pred             cCCcceEE-EccccCCccccccccccCccccc-eEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCC
Confidence            33566676 988731              123 79999999999999997522  3667888999999999999986   


Q ss_pred             -CeEEEecCCCcEEEEecCCC-------eeeE----eeeeeeecCCCceece
Q 021291          265 -NGGISGGADQKIVLYNLDHS-------TYVL----FGIGFVCDQEGNKFGT  304 (314)
Q Consensus       265 -~~l~s~s~dg~i~iw~~~~~-------~~~~----~~~~~~~~~~~~~~~~  304 (314)
                       .+|++++.||+|++|+++..       +.+.    .+..++++|++..+++
T Consensus       228 ~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las  279 (316)
T 3bg1_A          228 TSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAV  279 (316)
T ss_dssp             CCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEE
T ss_pred             CceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEE
Confidence             78999999999999998762       1111    1345667788876654

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.95  E-value=2.7e-25  Score=185.84  Aligned_cols=243  Identities=12%  Similarity=0.089  Sum_probs=179.8

Q ss_pred             CEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeE-EEeecCCeEEEEeCCCCCCCCCCeeeeecc
Q 021291           31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKV-ISQGRDGTVKCWDIENGGLSSNPSLTIKTN  109 (314)
Q Consensus        31 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~  109 (314)
                      .++++++.|+.|++||+.+++.+..+..|.   .+.+++|+|  +++.+ ++++.|++|++||+.+++...  .+.... 
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~---~~~~~~~s~--dg~~l~~~~~~d~~i~v~d~~~~~~~~--~~~~~~-   74 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGS---NPMGAVISP--DGTKVYVANAHSNDVSIIDTATNNVIA--TVPAGS-   74 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSS---SEEEEEECT--TSSEEEEEEGGGTEEEEEETTTTEEEE--EEECSS-
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCC---CcceEEECC--CCCEEEEECCCCCeEEEEECCCCeEEE--EEECCC-
Confidence            468899999999999999999999888774   389999999  88876 677789999999999887543  222222 


Q ss_pred             eeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC---ceeccCCCceEEEeecCcCeEEEEecCCCceee
Q 021291          110 SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCT  186 (314)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~  186 (314)
                      ......+++................+|++...+..... ..+..   ++|+|+++.+++ +++.|+.|++||+++++.+.
T Consensus        75 ~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~-~~~~~~~v~~~d~~~~~~~~  152 (391)
T 1l0q_A           75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV-KTGKSPLGLALSPDGKKLYV-TNNGDKTVSVINTVTKAVIN  152 (391)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE-ECSSSEEEEEECTTSSEEEE-EETTTTEEEEEETTTTEEEE
T ss_pred             CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEE-eCCCCcceEEECCCCCEEEE-EeCCCCEEEEEECCCCcEEE
Confidence            33334444433333333334466778888776544332 22333   899999987655 56778999999999998887


Q ss_pred             eecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCe
Q 021291          187 RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNG  266 (314)
Q Consensus       187 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  266 (314)
                      .+.        .+     ..+..+. |+|+   ++.++++++.++.|++||+++ ++.+..+. +...+.+++|+|++++
T Consensus       153 ~~~--------~~-----~~~~~~~-~~~d---g~~l~~~~~~~~~v~~~d~~~-~~~~~~~~-~~~~~~~~~~~~~g~~  213 (391)
T 1l0q_A          153 TVS--------VG-----RSPKGIA-VTPD---GTKVYVANFDSMSISVIDTVT-NSVIDTVK-VEAAPSGIAVNPEGTK  213 (391)
T ss_dssp             EEE--------CC-----SSEEEEE-ECTT---SSEEEEEETTTTEEEEEETTT-TEEEEEEE-CSSEEEEEEECTTSSE
T ss_pred             EEe--------cC-----CCcceEE-ECCC---CCEEEEEeCCCCEEEEEECCC-CeEEEEEe-cCCCccceEECCCCCE
Confidence            776        22     2346776 9998   553557888899999999997 66666665 5678899999999999


Q ss_pred             EEEec---CCCcEEEEecCCCeeeEee------eeeeecCCCcee
Q 021291          267 GISGG---ADQKIVLYNLDHSTYVLFG------IGFVCDQEGNKF  302 (314)
Q Consensus       267 l~s~s---~dg~i~iw~~~~~~~~~~~------~~~~~~~~~~~~  302 (314)
                      |++++   .++.|++||+++++.+..+      ..+.++|++..+
T Consensus       214 l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l  258 (391)
T 1l0q_A          214 AYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKV  258 (391)
T ss_dssp             EEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEE
T ss_pred             EEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEE
Confidence            98887   6899999999998876543      345677887654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.95  E-value=1e-25  Score=190.76  Aligned_cols=244  Identities=11%  Similarity=0.130  Sum_probs=172.7

Q ss_pred             CceeEEEEccCC----------CEEEEecC----CCeEEEEeCC--------------------------CCeE-EEEEe
Q 021291           19 ASVTDVCFHQTK----------PILFAGTT----GGELRIWDTV--------------------------QHRT-VSSSW   57 (314)
Q Consensus        19 ~~v~~~~~~~~~----------~~l~s~~~----dg~v~iwd~~--------------------------~~~~-~~~~~   57 (314)
                      -+..++.|.|+.          .+|+.|+.    ...|.++++.                          +++. .....
T Consensus        46 wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  125 (430)
T 2xyi_A           46 WPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKI  125 (430)
T ss_dssp             SCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEEEEE
T ss_pred             CCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEEEEE
Confidence            356888888854          46777765    3457777532                          1111 23345


Q ss_pred             ccCCcccEEEEEEcccCC-CCeEEEeecCCeEEEEeCCCCCC------CCCCeeeeecc--eeeEEEeeeeecccccccc
Q 021291           58 VHSAAHGIVSVATGPSIG-LNKVISQGRDGTVKCWDIENGGL------SSNPSLTIKTN--SYHFCKLSLVKEPYANAKQ  128 (314)
Q Consensus        58 ~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  128 (314)
                      .|.  ..|.+++|+|  + +.+|++++.||.|++||+.+...      ...+...+..+  ......+++..........
T Consensus       126 ~h~--~~v~~l~~~p--~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          126 NHE--GEVNRARYMP--QNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EES--SCCSEEEEET--TEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             cCC--CcEEEEEECC--CCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            676  4499999999  6 67899999999999999976210      01223333333  3333444444333444555


Q ss_pred             CCCCcceeeccCCce------eeecCCCCCC----ceeccCCCceEEEeecCcCeEEEEecCCC---ceeeeecccccCC
Q 021291          129 ANEPKDCYEREVGET------VDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTA---ERCTRLHQNSCGG  195 (314)
Q Consensus       129 ~~~~~~~~~~~~~~~------~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~vwd~~~~---~~~~~~~~~~~~~  195 (314)
                      ..+...+|++.....      ....+.+|..    ++|+|++..+++ +++.|+.|++||++++   +.+..+.      
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~-s~~~dg~i~i~d~~~~~~~~~~~~~~------  274 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFG-SVADDQKLMIWDTRNNNTSKPSHTVD------  274 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEE-EEETTSEEEEEETTCSCSSSCSEEEE------
T ss_pred             CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEE-EEeCCCeEEEEECCCCCCCcceeEee------
Confidence            667788888876321      1233456655    899997766666 5666999999999987   4555554      


Q ss_pred             CCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCC-eEEEecCCC
Q 021291          196 SPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCN-GGISGGADQ  274 (314)
Q Consensus       196 ~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~dg  274 (314)
                        +|    ...+.++. |+|+   +..++++|+.||.|++||+++...++..+.+|...|++++|+|++. +|++++.||
T Consensus       275 --~~----~~~v~~i~-~~p~---~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~  344 (430)
T 2xyi_A          275 --AH----TAEVNCLS-FNPY---SEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR  344 (430)
T ss_dssp             --CC----SSCEEEEE-ECSS---CTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTS
T ss_pred             --cC----CCCeEEEE-eCCC---CCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCC
Confidence              45    45688887 9998   4337999999999999999986788999999999999999999985 589999999


Q ss_pred             cEEEEecCC
Q 021291          275 KIVLYNLDH  283 (314)
Q Consensus       275 ~i~iw~~~~  283 (314)
                      .|++||+..
T Consensus       345 ~i~iwd~~~  353 (430)
T 2xyi_A          345 RLHVWDLSK  353 (430)
T ss_dssp             CCEEEEGGG
T ss_pred             cEEEEeCCC
Confidence            999999987

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.95  E-value=7e-26  Score=185.86  Aligned_cols=217  Identities=13%  Similarity=0.170  Sum_probs=151.1

Q ss_pred             CceEEecCCCCceeEEEEcc--CCCEEEEecCCCeEEEEeCCCC---------eEEEEEeccCCcccEEEEEEcccCC--
Q 021291            9 DPVAVLRGHRASVTDVCFHQ--TKPILFAGTTGGELRIWDTVQH---------RTVSSSWVHSAAHGIVSVATGPSIG--   75 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~--~~~~l~s~~~dg~v~iwd~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~--   75 (314)
                      +++..+.+|...|++++|+|  ++++|++|+.||.|++||++++         +.+..+..|..  .|.+++|+|  +  
T Consensus        48 ~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~--~~~  123 (351)
T 3f3f_A           48 ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKG--SLYSVKFAP--AHL  123 (351)
T ss_dssp             EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSS--CEEEEEECC--GGG
T ss_pred             eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCC--ceeEEEEcC--CCC
Confidence            46788899999999999999  6999999999999999999876         66778888884  499999999  7  


Q ss_pred             CCeEEEeecCCeEEEEeCCCCCCCCCCeeee-----------ecceeeEEEeeeee--ccccccccCCCCcceeeccCCc
Q 021291           76 LNKVISQGRDGTVKCWDIENGGLSSNPSLTI-----------KTNSYHFCKLSLVK--EPYANAKQANEPKDCYEREVGE  142 (314)
Q Consensus        76 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  142 (314)
                      +.+|++++.||.|++||+++++.........           +........+.+..  ..........+....+......
T Consensus       124 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~  203 (351)
T 3f3f_A          124 GLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK  203 (351)
T ss_dssp             CSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSC
T ss_pred             CcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCc
Confidence            8999999999999999999887654211100           11111222222220  1111112222222222323332


Q ss_pred             -eeeecCCCCCC----ceeccCCC---ceEEEeecCcCeEEEEecCCC--------------------------------
Q 021291          143 -TVDTDSLCDSK----DDVPAEGP---KYMAVAGEQLSEVEIWDLNTA--------------------------------  182 (314)
Q Consensus       143 -~~~~~~~~~~~----~~~~~~~~---~~~~~~g~~d~~i~vwd~~~~--------------------------------  182 (314)
                       .....+.+|..    ++|+|++.   .+++ +|+.|+.|++||++++                                
T Consensus       204 ~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (351)
T 3f3f_A          204 LHVAAKLPGHKSLIRSISWAPSIGRWYQLIA-TGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDS  282 (351)
T ss_dssp             EEEEEECCCCCSCEEEEEECCCSSCSSEEEE-EEETTSCEEEEEEEECC-------------------------------
T ss_pred             eeeeeecCCCCcceeEEEECCCCCCcceEEE-EEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccccccccc
Confidence             23555667766    89999984   3444 6777999999999865                                


Q ss_pred             --------------ceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEee
Q 021291          183 --------------ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM  248 (314)
Q Consensus       183 --------------~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~  248 (314)
                                    +.+..+.        +|    ...+.++. |+|+   ++ +|++|+.||.|++||+.+ ++.+..+
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~--------~h----~~~v~~~~-~s~~---~~-~l~s~~~dg~v~iw~~~~-~~~~~~~  344 (351)
T 3f3f_A          283 NTEEKAELQSNLQVELLSEHD--------DH----NGEVWSVS-WNLT---GT-ILSSAGDDGKVRLWKATY-SNEFKCM  344 (351)
T ss_dssp             --------CCSEEEEEEEEEC--------TT----SSCEEEEE-ECSS---SC-CEEEEETTSCEEEEEECT-TSCEEEE
T ss_pred             ccceeeeecccccccEEEEEe--------cc----cccEEEEE-EcCC---CC-EEEEecCCCcEEEEecCc-Ccchhhe
Confidence                          2333333        44    45788888 9998   44 899999999999999997 5444433

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.95  E-value=2.8e-25  Score=183.31  Aligned_cols=234  Identities=9%  Similarity=0.035  Sum_probs=167.9

Q ss_pred             CceeEEEEccCCCEE-EEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCC-
Q 021291           19 ASVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG-   96 (314)
Q Consensus        19 ~~v~~~~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-   96 (314)
                      ..+..+++.++++.+ ++++.|++|+|||..+++++..+. +.  ..|.+++|++  +  .++.+ .|+.|++||+.++ 
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~--~~v~~v~~~~--~--~~~~~-~~~~i~i~d~~~~~  130 (355)
T 3vu4_A           59 RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VD--APVKDLFLSR--E--FIVVS-YGDVISVFKFGNPW  130 (355)
T ss_dssp             SCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CS--SCEEEEEECS--S--EEEEE-ETTEEEEEESSTTC
T ss_pred             CCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CC--CceEEEEEcC--C--EEEEE-EcCEEEEEECCCCc
Confidence            357888999888777 568889999999999999998887 44  4599999988  4  44444 4789999999987 


Q ss_pred             CCCCCCeeeeecceeeEEEeeeeecccccc-ccCCCCcceeeccCCce--------------e-eecCCCCCC----cee
Q 021291           97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANA-KQANEPKDCYEREVGET--------------V-DTDSLCDSK----DDV  156 (314)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------------~-~~~~~~~~~----~~~  156 (314)
                      +.+.    .+.. +...+.+++  ...... ....+...+|++.....              . ...+.+|..    ++|
T Consensus       131 ~~~~----~~~~-~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~  203 (355)
T 3vu4_A          131 KRIT----DDIR-FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRL  203 (355)
T ss_dssp             CBSS----CCEE-EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEE
T ss_pred             eeeE----Eecc-CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEE
Confidence            5544    2222 333344433  222222 34556778888876431              1 345667776    899


Q ss_pred             ccCCCceEEEeecCcCe-EEEEecCCCceeeeecccccCCCCC-cCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEE
Q 021291          157 PAEGPKYMAVAGEQLSE-VEIWDLNTAERCTRLHQNSCGGSPN-FSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL  234 (314)
Q Consensus       157 ~~~~~~~~~~~g~~d~~-i~vwd~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~  234 (314)
                      +|+++.++  +|+.|++ |++||+++++.+..+..       + |    ...+.+++ |+|+   |+ +|++++.|+.|+
T Consensus       204 s~~g~~l~--s~s~d~~~v~iwd~~~~~~~~~~~~-------g~h----~~~v~~~~-~s~~---~~-~l~s~s~d~~v~  265 (355)
T 3vu4_A          204 NRKSDMVA--TCSQDGTIIRVFKTEDGVLVREFRR-------GLD----RADVVDMK-WSTD---GS-KLAVVSDKWTLH  265 (355)
T ss_dssp             CTTSSEEE--EEETTCSEEEEEETTTCCEEEEEEC-------TTC----CSCEEEEE-ECTT---SC-EEEEEETTCEEE
T ss_pred             CCCCCEEE--EEeCCCCEEEEEECCCCcEEEEEEc-------CCC----CCcEEEEE-ECCC---CC-EEEEEECCCEEE
Confidence            99987443  6778998 99999999999988872       2 5    45788888 9998   55 899999999999


Q ss_pred             EEEccCCCC-ceEeee---------------------cCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCe
Q 021291          235 VWDIRNPGI-PLTAMK---------------------VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST  285 (314)
Q Consensus       235 vwd~~~~~~-~~~~~~---------------------~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~  285 (314)
                      +||++.... ....+.                     .+......++|++++.+|++++.||.+++|++..++
T Consensus       266 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~  338 (355)
T 3vu4_A          266 VFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD  338 (355)
T ss_dssp             EEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred             EEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence            999976221 111111                     112234678999999999999999999999986543

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.94  E-value=3.9e-26  Score=181.72  Aligned_cols=170  Identities=14%  Similarity=0.058  Sum_probs=123.2

Q ss_pred             CCceEEecCCCCceeEEEEcc---CCCEEEEecCCCeEEEEeCCCCeEEEEEeccC-CcccEEEEEEcccCCCCeE----
Q 021291            8 PDPVAVLRGHRASVTDVCFHQ---TKPILFAGTTGGELRIWDTVQHRTVSSSWVHS-AAHGIVSVATGPSIGLNKV----   79 (314)
Q Consensus         8 ~~~~~~l~~h~~~v~~~~~~~---~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l----   79 (314)
                      ++.+..+.+|...++.++|++   ++.+|++|+.|++|+|||+++++++.++.+|. ....+.+++|+|  ++.++    
T Consensus       168 G~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSp--dG~~lvs~s  245 (356)
T 2w18_A          168 GGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSE--MGLLFIVLS  245 (356)
T ss_dssp             SCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEE--TTEEEEEEC
T ss_pred             CceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECC--CCCEEEEec
Confidence            577788888999999999999   67899999999999999999999999998653 223588889999  88876    


Q ss_pred             --------EEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCC
Q 021291           80 --------ISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCD  151 (314)
Q Consensus        80 --------~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (314)
                              ++|+.|++|++||..+++.+.  .+....         +                              .+|
T Consensus       246 ~~~~~w~laSGs~D~tIklWd~~tgk~l~--v~~~~~---------p------------------------------~Gh  284 (356)
T 2w18_A          246 HPCAKESESLRSPVFQLIVINPKTTLSVG--VMLYCL---------P------------------------------PGQ  284 (356)
T ss_dssp             ------------CCEEEEEEETTTTEEEE--EEEECC---------C------------------------------TTC
T ss_pred             cCCCcceeeccCCCcEEEEEECCCCEEEE--EEEeec---------c------------------------------CCC
Confidence                    568889999999999886432  110000         0                              000


Q ss_pred             CC--ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeec
Q 021291          152 SK--DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE  229 (314)
Q Consensus       152 ~~--~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~  229 (314)
                      ..  ++.+.++.  ++++|+.|++|+|||+++++++.++.        +|...   .+..++ |+|+   |+ +|++|+.
T Consensus       285 ~~~~lsg~~sg~--~lASgS~DgTIkIWDl~tGk~l~tL~--------gH~~~---vvs~va-fSPD---G~-~LaSGS~  346 (356)
T 2w18_A          285 AGRFLEGDVKDH--CAAAILTSGTIAIWDLLLGQCTALLP--------PVSDQ---HWSFVK-WSGT---DS-HLLAGQK  346 (356)
T ss_dssp             CCCEEEEEEETT--EEEEEETTSCEEEEETTTCSEEEEEC--------CC--C---CCCEEE-ECSS---SS-EEEEECT
T ss_pred             cceeEccccCCC--EEEEEcCCCcEEEEECCCCcEEEEec--------CCCCC---eEEEEE-ECCC---CC-EEEEEEC
Confidence            00  11112222  34478889999999999999999998        67432   233465 9998   55 9999999


Q ss_pred             CCcEEEEEc
Q 021291          230 DGSILVWDI  238 (314)
Q Consensus       230 dg~i~vwd~  238 (314)
                      |++|+|||+
T Consensus       347 D~TIklWd~  355 (356)
T 2w18_A          347 DGNIFVYHY  355 (356)
T ss_dssp             TSCEEEEEE
T ss_pred             CCcEEEecC
Confidence            999999996

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.94  E-value=4.8e-25  Score=183.21  Aligned_cols=216  Identities=16%  Similarity=0.162  Sum_probs=156.9

Q ss_pred             CCceEEecCCCCceeEEEEccC--CCEEEEecCCCeEEEEeCCCCe--EEEEEeccCCcccEEEEEEcccCC--CCeEEE
Q 021291            8 PDPVAVLRGHRASVTDVCFHQT--KPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIG--LNKVIS   81 (314)
Q Consensus         8 ~~~~~~l~~h~~~v~~~~~~~~--~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~s   81 (314)
                      .+++..+.+|.+.|++++|+++  +++|++|+.||.|++||+.+++  .+..+..|.  ..|.+++|+|  +  +.+|++
T Consensus        45 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~~~l~~  120 (379)
T 3jrp_A           45 HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHS--ASVNSVQWAP--HEYGPLLLV  120 (379)
T ss_dssp             EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCS--SCEEEEEECC--GGGCSEEEE
T ss_pred             ceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCC--cceEEEEeCC--CCCCCEEEE
Confidence            3567889999999999999976  9999999999999999999987  667777777  4499999999  7  899999


Q ss_pred             eecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeee------------eccccccccCCCCcceeeccCCc---eeee
Q 021291           82 QGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLV------------KEPYANAKQANEPKDCYEREVGE---TVDT  146 (314)
Q Consensus        82 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~---~~~~  146 (314)
                      ++.|+.|++||+++........+..+........+.+.            ...........+...+|+++...   ....
T Consensus       121 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  200 (379)
T 3jrp_A          121 ASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES  200 (379)
T ss_dssp             EETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEE
T ss_pred             ecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEE
Confidence            99999999999998755431122223333444444442            12333444556678888887554   3444


Q ss_pred             cCCCCCC----ceeccCC--CceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCC
Q 021291          147 DSLCDSK----DDVPAEG--PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQG  220 (314)
Q Consensus       147 ~~~~~~~----~~~~~~~--~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g  220 (314)
                      .+.+|..    ++|+|++  ..+++ +++.|+.|++||++++........       .........+.++. |+|+   +
T Consensus       201 ~~~~h~~~v~~~~~sp~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~~~~~v~~~~-~s~~---g  268 (379)
T 3jrp_A          201 TLEGHSDWVRDVAWSPTVLLRSYLA-SVSQDRTCIIWTQDNEQGPWKKTL-------LKEEKFPDVLWRAS-WSLS---G  268 (379)
T ss_dssp             EECCCSSCEEEEEECCCCSSSEEEE-EEETTSCEEEEEESSTTSCCEEEE-------SSSSCCSSCEEEEE-ECSS---S
T ss_pred             EEecccCcEeEEEECCCCCCCCeEE-EEeCCCEEEEEeCCCCCccceeee-------eccccCCCcEEEEE-EcCC---C
Confidence            5666766    8999994  34444 566799999999998652211110       11112355788887 9998   5


Q ss_pred             ceEEEEeecCCcEEEEEccC
Q 021291          221 FVNVLAGYEDGSILVWDIRN  240 (314)
Q Consensus       221 ~~~l~~g~~dg~i~vwd~~~  240 (314)
                      + +|++++.||.|++||++.
T Consensus       269 ~-~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          269 N-VLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             C-CEEEEESSSSEEEEEEEE
T ss_pred             C-EEEEecCCCcEEEEeCCC
Confidence            5 899999999999999985

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.94  E-value=7.9e-25  Score=183.66  Aligned_cols=253  Identities=13%  Similarity=0.095  Sum_probs=150.5

Q ss_pred             cCCCCceeEEEEcc-CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccC-CCCeEEEeecCCeEEEEe
Q 021291           15 RGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSI-GLNKVISQGRDGTVKCWD   92 (314)
Q Consensus        15 ~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~v~iwd   92 (314)
                      .+|...|.+++|+| ++++|++++.||.|++||+.+++....+. +.  ..+.++.|+|.. ++.++++++.|+.|++||
T Consensus        96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d  172 (408)
T 4a11_B           96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FE--ETVYSHHMSPVSTKHCLVAVGTRGPKVQLCD  172 (408)
T ss_dssp             TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CS--SCEEEEEECSSCSSCCEEEEEESSSSEEEEE
T ss_pred             ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CC--CceeeeEeecCCCCCcEEEEEcCCCeEEEEe
Confidence            36999999999999 78899999999999999999999888876 44  449999998831 234899999999999999


Q ss_pred             CCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecC---------------CCCCC----
Q 021291           93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDS---------------LCDSK----  153 (314)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~----  153 (314)
                      +++++...  .+..+........+++............+...+|+++........+               ..|..    
T Consensus       173 ~~~~~~~~--~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  250 (408)
T 4a11_B          173 LKSGSCSH--ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNG  250 (408)
T ss_dssp             SSSSCCCE--EECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEE
T ss_pred             CCCcceee--eecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeE
Confidence            99886643  3333344444555555444334455666778888887654222222               34444    


Q ss_pred             ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccC-----------------------------------CCCC
Q 021291          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCG-----------------------------------GSPN  198 (314)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~-----------------------------------~~~~  198 (314)
                      ++|+|+++.++  +++.|+.|++||+++++....+......                                   ....
T Consensus       251 ~~~~~~~~~l~--~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~  328 (408)
T 4a11_B          251 LCFTSDGLHLL--TVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQIT  328 (408)
T ss_dssp             EEECTTSSEEE--EEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEE
T ss_pred             EEEcCCCCEEE--EecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCccee
Confidence            88999987554  5666899999999876643322100000                                   0000


Q ss_pred             cCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeC-CCCeEEEecCCCcEE
Q 021291          199 FSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDE-SCNGGISGGADQKIV  277 (314)
Q Consensus       199 h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~i~  277 (314)
                      .-......+.++. |+|+   ++ +|++|+.||.|++||+++ .+++.....+...   ..+.+ ....+.+.+.|+.++
T Consensus       329 ~~~~~~~~v~~~~-~s~~---~~-~l~s~~~dg~i~iw~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  399 (408)
T 4a11_B          329 MLKGHYKTVDCCV-FQSN---FQ-ELYSGSRDCNILAWVPSL-YEPVPDDDETTTK---SQLNPAFEDAWSSSDEEGGTS  399 (408)
T ss_dssp             EECCCSSCEEEEE-EETT---TT-EEEEEETTSCEEEEEECC--------------------------------------
T ss_pred             eeccCCCeEEEEE-EcCC---CC-EEEEECCCCeEEEEeCCC-CCccCCCCceEec---cccccccceeecccCccCcee
Confidence            0011245788887 9998   55 899999999999999998 6665554433221   22322 233456777899999


Q ss_pred             EEecCC
Q 021291          278 LYNLDH  283 (314)
Q Consensus       278 iw~~~~  283 (314)
                      +|+...
T Consensus       400 ~W~~~~  405 (408)
T 4a11_B          400 AWSHPQ  405 (408)
T ss_dssp             ------
T ss_pred             ecCCcc
Confidence            998654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.93  E-value=4.7e-23  Score=178.60  Aligned_cols=280  Identities=10%  Similarity=0.005  Sum_probs=189.7

Q ss_pred             CCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeC--CCCeEEEEEeccCCcccEEEEEEccc--CCCCeEEEe
Q 021291            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDT--VQHRTVSSSWVHSAAHGIVSVATGPS--IGLNKVISQ   82 (314)
Q Consensus         7 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~--~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~l~s~   82 (314)
                      .++++.++..+.. +.+++|+|||++|++++.|+.|++||+  .+++.+..+...   ..+..++|+|.  .++++++++
T Consensus       168 t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g---~~p~~va~sp~~~~dg~~l~v~  243 (543)
T 1nir_A          168 SKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG---IEARSVESSKFKGYEDRYTIAG  243 (543)
T ss_dssp             TCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC---SEEEEEEECCSTTCTTTEEEEE
T ss_pred             CceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecC---CCcceEEeCCCcCCCCCEEEEE
Confidence            4567788873333 889999999999999999999999999  889988888743   34799999871  146788887


Q ss_pred             e-cCCeEEEEeCCCCCCCCCCeeeeec----------c-eeeEEEeeeeeccccccccCCCCcceeeccCCceee--e-c
Q 021291           83 G-RDGTVKCWDIENGGLSSNPSLTIKT----------N-SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVD--T-D  147 (314)
Q Consensus        83 ~-~dg~v~iwd~~~~~~~~~~~~~~~~----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~  147 (314)
                      + .+++|.+||..+++++.  .+....          . ......+++............+...+++......+.  . .
T Consensus       244 ~~~~~~v~v~D~~t~~~~~--~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~  321 (543)
T 1nir_A          244 AYWPPQFAIMDGETLEPKQ--IVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG  321 (543)
T ss_dssp             EEESSEEEEEETTTCCEEE--EEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE
T ss_pred             EccCCeEEEEeccccccce--eecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec
Confidence            7 48999999999887644  222111          0 112222232222222233334455556655433221  1 1


Q ss_pred             CCCCC-CceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEE
Q 021291          148 SLCDS-KDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA  226 (314)
Q Consensus       148 ~~~~~-~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~  226 (314)
                      ..... .++|+|+|+++++ ++..+++|.+||+.+++++..+...    ...|.    +....+  ++|+   +..++++
T Consensus       322 ~~~~~~~~~~spdg~~l~v-a~~~~~~v~v~D~~tg~l~~~i~~g----~~ph~----g~g~~~--~~p~---~g~~~~s  387 (543)
T 1nir_A          322 AAPFLHDGGWDSSHRYFMT-AANNSNKVAVIDSKDRRLSALVDVG----KTPHP----GRGANF--VHPK---YGPVWST  387 (543)
T ss_dssp             CCSSCCCEEECTTSCEEEE-EEGGGTEEEEEETTTTEEEEEEECS----SSBCC----TTCEEE--EETT---TEEEEEE
T ss_pred             cCcCccCceECCCCCEEEE-EecCCCeEEEEECCCCeEEEeeccC----CCCCC----CCCccc--CCCC---CccEEEe
Confidence            11111 2899999987765 4555789999999999988877620    00131    112221  4665   2326777


Q ss_pred             ee-cCCcEEEEEccCC------CCceEeeecCCcceEEEEEeCCCCeEEEec-------CCCcEEEEecCCCeeeEe---
Q 021291          227 GY-EDGSILVWDIRNP------GIPLTAMKVHLEPVLCLSIDESCNGGISGG-------ADQKIVLYNLDHSTYVLF---  289 (314)
Q Consensus       227 g~-~dg~i~vwd~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s-------~dg~i~iw~~~~~~~~~~---  289 (314)
                      +. .|++|.+||+.+.      .++++++.+|...+..++++|++++|++++       .+++|.+||+++++..+.   
T Consensus       388 ~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~  467 (543)
T 1nir_A          388 SHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLP  467 (543)
T ss_dssp             EBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEEC
T ss_pred             ccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEee
Confidence            65 6899999999862      578899999999999999999999999987       277999999998876632   


Q ss_pred             -------------eeeeeecCCCceec-eee
Q 021291          290 -------------GIGFVCDQEGNKFG-TTW  306 (314)
Q Consensus       290 -------------~~~~~~~~~~~~~~-~~w  306 (314)
                                   ...+.++++|..+. ++|
T Consensus       468 v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~  498 (543)
T 1nir_A          468 IAEWADLGEGAKRVVQPEYNKRGDEVWFSVW  498 (543)
T ss_dssp             HHHHHCCCSSCCEEEEEEECSSSSEEEEEEE
T ss_pred             chhhcccCCCCCceEeccCCCCCCEEEEEee
Confidence                         23466778887544 445

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.93  E-value=4.1e-24  Score=192.79  Aligned_cols=216  Identities=16%  Similarity=0.162  Sum_probs=158.1

Q ss_pred             CCceEEecCCCCceeEEEEccC--CCEEEEecCCCeEEEEeCCCCe--EEEEEeccCCcccEEEEEEcccCC--CCeEEE
Q 021291            8 PDPVAVLRGHRASVTDVCFHQT--KPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIG--LNKVIS   81 (314)
Q Consensus         8 ~~~~~~l~~h~~~v~~~~~~~~--~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~s   81 (314)
                      .+.+..+.+|.++|++++|+|+  +++|++|+.||.|++||+.+++  .+..+..|.  ..|.+++|+|  +  ++.|++
T Consensus        43 ~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~--~~V~~v~~sp--~~~~~~l~s  118 (753)
T 3jro_A           43 HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHS--ASVNSVQWAP--HEYGPLLLV  118 (753)
T ss_dssp             EEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCS--SCEEEEEECC--GGGCSEEEE
T ss_pred             CccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCC--CCeEEEEECC--CCCCCEEEE
Confidence            3567889999999999999987  9999999999999999999887  667777787  4599999999  7  899999


Q ss_pred             eecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeee------------eccccccccCCCCcceeeccCCc---eeee
Q 021291           82 QGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLV------------KEPYANAKQANEPKDCYEREVGE---TVDT  146 (314)
Q Consensus        82 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~---~~~~  146 (314)
                      |+.||+|++||++++..........+........+++.            ...........+...+|+++...   ....
T Consensus       119 gs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~  198 (753)
T 3jro_A          119 ASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES  198 (753)
T ss_dssp             EETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEE
T ss_pred             EeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeee
Confidence            99999999999998755432222233334444444442            12334445556778888887654   3445


Q ss_pred             cCCCCCC----ceeccCC--CceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCC
Q 021291          147 DSLCDSK----DDVPAEG--PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQG  220 (314)
Q Consensus       147 ~~~~~~~----~~~~~~~--~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g  220 (314)
                      .+.+|..    ++|+|++  ..+++ +++.||.|++||+++++.......       .........+.++. |+|+   |
T Consensus       199 ~~~~h~~~V~~l~~sp~~~~~~~l~-s~s~Dg~I~iwd~~~~~~~~~~~~-------~~~~~~~~~v~~l~-~spd---g  266 (753)
T 3jro_A          199 TLEGHSDWVRDVAWSPTVLLRSYLA-SVSQDRTCIIWTQDNEQGPWKKTL-------LKEEKFPDVLWRAS-WSLS---G  266 (753)
T ss_dssp             EECCCSSCEEEEEECCCCSSSEEEE-EEESSSCEEEEEESSSSSCCBCCB-------SSSSCCSSCCCCEE-ECTT---T
T ss_pred             eecCCCCcEEEEEeccCCCCCCEEE-EEecCCEEEEecCCCCCCcceeEE-------eccCCCCCceEEEE-EcCC---C
Confidence            5667766    8999993  33444 566799999999998653211110       11112355677887 9998   5


Q ss_pred             ceEEEEeecCCcEEEEEccC
Q 021291          221 FVNVLAGYEDGSILVWDIRN  240 (314)
Q Consensus       221 ~~~l~~g~~dg~i~vwd~~~  240 (314)
                      . ++++|+.||.|++||++.
T Consensus       267 ~-~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          267 N-VLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             C-CEEEECSSSCEECCBCCS
T ss_pred             C-EEEEEcCCCEEEEEecCC
Confidence            5 899999999999999985

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.92  E-value=9.6e-23  Score=171.49  Aligned_cols=208  Identities=11%  Similarity=0.016  Sum_probs=152.8

Q ss_pred             CCceEEecCCCCceeEEEEccCCCEEEEecCCC---eEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEE-Eee
Q 021291            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGG---ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQG   83 (314)
Q Consensus         8 ~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg---~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~   83 (314)
                      +..++.+.+|...|.+++|+|||++|++++.|+   .|++||+.+++.. .+..+.  ..+.+++|+|  +++.|+ +++
T Consensus       168 g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~--~~~~~~~~sp--dg~~la~~~~  242 (415)
T 2hqs_A          168 GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFP--RHNGAPAFSP--DGSKLAFALS  242 (415)
T ss_dssp             SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCS--SCEEEEEECT--TSSEEEEEEC
T ss_pred             CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCC--CcccCEEEcC--CCCEEEEEEe
Confidence            455678888999999999999999999999885   9999999988775 455666  4499999999  999887 666


Q ss_pred             cCCe--EEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCC
Q 021291           84 RDGT--VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGP  161 (314)
Q Consensus        84 ~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (314)
                      .|+.  |++||+.+++..     .+........  .                                    ++|+|+|+
T Consensus       243 ~~g~~~i~~~d~~~~~~~-----~l~~~~~~~~--~------------------------------------~~~spdg~  279 (415)
T 2hqs_A          243 KTGSLNLYVMDLASGQIR-----QVTDGRSNNT--E------------------------------------PTWFPDSQ  279 (415)
T ss_dssp             TTSSCEEEEEETTTCCEE-----ECCCCSSCEE--E------------------------------------EEECTTSS
T ss_pred             cCCCceEEEEECCCCCEE-----eCcCCCCccc--c------------------------------------eEECCCCC
Confidence            6654  999999887531     1111111000  0                                    56999998


Q ss_pred             ceEEEeecCcC--eEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecC---CcEEEE
Q 021291          162 KYMAVAGEQLS--EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED---GSILVW  236 (314)
Q Consensus       162 ~~~~~~g~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~d---g~i~vw  236 (314)
                      .+++. +..++  .|.+||+.+++.. .+.        .+    ...+.++. |+|+   |+ +|++++.+   ..|++|
T Consensus       280 ~l~~~-s~~~g~~~i~~~d~~~~~~~-~l~--------~~----~~~~~~~~-~spd---G~-~l~~~~~~~g~~~i~~~  340 (415)
T 2hqs_A          280 NLAFT-SDQAGRPQVYKVNINGGAPQ-RIT--------WE----GSQNQDAD-VSSD---GK-FMVMVSSNGGQQHIAKQ  340 (415)
T ss_dssp             EEEEE-ECTTSSCEEEEEETTSSCCE-ECC--------CS----SSEEEEEE-ECTT---SS-EEEEEEECSSCEEEEEE
T ss_pred             EEEEE-ECCCCCcEEEEEECCCCCEE-EEe--------cC----CCcccCeE-ECCC---CC-EEEEEECcCCceEEEEE
Confidence            76653 33344  6888899877643 333        22    23566777 9998   55 66666553   589999


Q ss_pred             EccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCC---cEEEEecCCCe
Q 021291          237 DIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQ---KIVLYNLDHST  285 (314)
Q Consensus       237 d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg---~i~iw~~~~~~  285 (314)
                      |+.+ ++. ..+..|. .+.+++|+|+|++|++++.|+   .|++||++.+.
T Consensus       341 d~~~-~~~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~  389 (415)
T 2hqs_A          341 DLAT-GGV-QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF  389 (415)
T ss_dssp             ETTT-CCE-EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred             ECCC-CCE-EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCc
Confidence            9997 554 4566554 899999999999999988877   79999998543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.91  E-value=9.8e-22  Score=160.48  Aligned_cols=255  Identities=6%  Similarity=0.009  Sum_probs=168.8

Q ss_pred             CCCceEEecCCCCceeEEEEccCCCEEEEecC-CCeEEEEeCCCCeE-EEEEeccCCcccEEEEEEcccCCCCeEEEeec
Q 021291            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTT-GGELRIWDTVQHRT-VSSSWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (314)
Q Consensus         7 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~-dg~v~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (314)
                      .++.+..+..+...+ +++|+|+|++|++++. ++.|.+||..+++. ...+..+..+  ..+++|+|  ++++++++..
T Consensus        29 ~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~--~~~~~~s~--dg~~l~~~~~  103 (331)
T 3u4y_A           29 TLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSS--MADVDITP--DDQFAVTVTG  103 (331)
T ss_dssp             TCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSC--CCCEEECT--TSSEEEECCC
T ss_pred             ccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCC--ccceEECC--CCCEEEEecC
Confidence            456667777777777 9999999996665554 89999999999887 6666666533  55599999  9999996555


Q ss_pred             CC---eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCC-cceeeccCCcee----eecCCCCCC---
Q 021291           85 DG---TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEP-KDCYEREVGETV----DTDSLCDSK---  153 (314)
Q Consensus        85 dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~---  153 (314)
                      ++   .|.+||+.+++...  .+... .......+++.+............ ..+|++......    .........   
T Consensus       104 ~~~~~~i~v~d~~~~~~~~--~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~  180 (331)
T 3u4y_A          104 LNHPFNMQSYSFLKNKFIS--TIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFN  180 (331)
T ss_dssp             SSSSCEEEEEETTTTEEEE--EEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEE
T ss_pred             CCCcccEEEEECCCCCeEE--EEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccc
Confidence            53   89999999886543  22221 222344455544333333333344 667776543221    111122222   


Q ss_pred             ceeccCCCceEEEeecCcCeEEEEecCCCce---eeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecC
Q 021291          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAER---CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED  230 (314)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~---~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~d  230 (314)
                      ++|+|+|+.+++ ++..++.|.+||+.+++.   +..+..             ...+..+. |+|+   |+.++++...+
T Consensus       181 ~~~spdg~~l~v-~~~~~~~v~v~d~~~~~~~~~~~~~~~-------------~~~~~~~~-~spd---g~~l~v~~~~~  242 (331)
T 3u4y_A          181 ITFTPDGNFAFV-ANLIGNSIGILETQNPENITLLNAVGT-------------NNLPGTIV-VSRD---GSTVYVLTEST  242 (331)
T ss_dssp             EEECTTSSEEEE-EETTTTEEEEEECSSTTSCEEEEEEEC-------------SSCCCCEE-ECTT---SSEEEEECSSE
T ss_pred             eEECCCCCEEEE-EeCCCCeEEEEECCCCcccceeeeccC-------------CCCCceEE-ECCC---CCEEEEEEcCC
Confidence            899999987665 555689999999998887   666652             23445666 9998   66344555567


Q ss_pred             CcEEEEEccCCCCc--eEeeecC----Cc---ceEEEEEeCCCCeEEE-ecCCCcEEEEecCCCeeeE
Q 021291          231 GSILVWDIRNPGIP--LTAMKVH----LE---PVLCLSIDESCNGGIS-GGADQKIVLYNLDHSTYVL  288 (314)
Q Consensus       231 g~i~vwd~~~~~~~--~~~~~~h----~~---~v~~~~~~~~~~~l~s-~s~dg~i~iw~~~~~~~~~  288 (314)
                      +.|.+||+.+ ++.  +..+..+    ..   ....++|+|++++|++ +..++.|.+||+......+
T Consensus       243 ~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~  309 (331)
T 3u4y_A          243 VDVFNFNQLS-GTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVVGY  309 (331)
T ss_dssp             EEEEEEETTT-TEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             CEEEEEECCC-CceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcccc
Confidence            8899999987 554  3333322    22   2356899999998754 5556799999998766433

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.90  E-value=1e-21  Score=157.40  Aligned_cols=229  Identities=12%  Similarity=0.105  Sum_probs=160.2

Q ss_pred             ceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCC-CeEEEEEeccCCcccEEEEEEcccCCCCeEEEee--cCC
Q 021291           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ-HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG--RDG   86 (314)
Q Consensus        10 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~--~dg   86 (314)
                      ....+..|...|.+++|+|+|++|++++ ++.|++||+.+ ++.......+.. ..|.+++|+|  ++++|++++  .++
T Consensus        33 ~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~sp--dg~~l~~~~~~~~~  108 (297)
T 2ojh_A           33 KMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFAT-ICNNDHGISP--DGALYAISDKVEFG  108 (297)
T ss_dssp             EEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCC-CBCSCCEECT--TSSEEEEEECTTTS
T ss_pred             ceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecccccc-ccccceEECC--CCCEEEEEEeCCCC
Confidence            3455667899999999999999999886 78999999998 777666555531 4588999999  999999988  334


Q ss_pred             eEEEEeC--CCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceE
Q 021291           87 TVKCWDI--ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM  164 (314)
Q Consensus        87 ~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (314)
                      ...||.+  .++..     ..+........                                       ++|+|+++.++
T Consensus       109 ~~~l~~~~~~~~~~-----~~~~~~~~~~~---------------------------------------~~~spdg~~l~  144 (297)
T 2ojh_A          109 KSAIYLLPSTGGTP-----RLMTKNLPSYW---------------------------------------HGWSPDGKSFT  144 (297)
T ss_dssp             SCEEEEEETTCCCC-----EECCSSSSEEE---------------------------------------EEECTTSSEEE
T ss_pred             cceEEEEECCCCce-----EEeecCCCccc---------------------------------------eEECCCCCEEE
Confidence            5555554  44431     11111111111                                       45999998766


Q ss_pred             EEeecCcCeEEEEecC--CCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEE-EeecCCcEEEEEccCC
Q 021291          165 AVAGEQLSEVEIWDLN--TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL-AGYEDGSILVWDIRNP  241 (314)
Q Consensus       165 ~~~g~~d~~i~vwd~~--~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~-~g~~dg~i~vwd~~~~  241 (314)
                      + ++..|+.+++|++.  +++ ...+.        .+    ...+.++. |+|+   |+ .|+ ++..++.+++|+++..
T Consensus       145 ~-~~~~~~~~~l~~~~~~~~~-~~~~~--------~~----~~~~~~~~-~s~d---g~-~l~~~~~~~~~~~i~~~~~~  205 (297)
T 2ojh_A          145 Y-CGIRDQVFDIYSMDIDSGV-ETRLT--------HG----EGRNDGPD-YSPD---GR-WIYFNSSRTGQMQIWRVRVD  205 (297)
T ss_dssp             E-EEEETTEEEEEEEETTTCC-EEECC--------CS----SSCEEEEE-ECTT---SS-EEEEEECTTSSCEEEEEETT
T ss_pred             E-EECCCCceEEEEEECCCCc-ceEcc--------cC----CCccccce-ECCC---CC-EEEEEecCCCCccEEEECCC
Confidence            5 45557889999864  333 33333        22    34567777 9998   55 455 4556899999998743


Q ss_pred             CCceEeeecCCcceEEEEEeCCCCeEEEecCC-----------CcEEEEecCCCeee--Ee-------eeeeeecCCCce
Q 021291          242 GIPLTAMKVHLEPVLCLSIDESCNGGISGGAD-----------QKIVLYNLDHSTYV--LF-------GIGFVCDQEGNK  301 (314)
Q Consensus       242 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d-----------g~i~iw~~~~~~~~--~~-------~~~~~~~~~~~~  301 (314)
                      +..+..+..|...+..++|+|++++|++++.+           +.|++||+++++..  ..       ...+.++|+|..
T Consensus       206 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~  285 (297)
T 2ojh_A          206 GSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDE  285 (297)
T ss_dssp             SSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSE
T ss_pred             CCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCE
Confidence            66777888888899999999999999888876           56999999887643  22       122456677776


Q ss_pred             ecee
Q 021291          302 FGTT  305 (314)
Q Consensus       302 ~~~~  305 (314)
                      +...
T Consensus       286 l~~~  289 (297)
T 2ojh_A          286 FAYV  289 (297)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6543

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.90  E-value=1e-21  Score=165.18  Aligned_cols=228  Identities=12%  Similarity=0.066  Sum_probs=161.4

Q ss_pred             CCCce--EEecCCCCceeEEEEcc--------------CCCEEEEecCC------CeEEEEeCCCCeEEEEEeccCCccc
Q 021291            7 PPDPV--AVLRGHRASVTDVCFHQ--------------TKPILFAGTTG------GELRIWDTVQHRTVSSSWVHSAAHG   64 (314)
Q Consensus         7 ~~~~~--~~l~~h~~~v~~~~~~~--------------~~~~l~s~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~   64 (314)
                      .++.+  ..+.+|...+..+++++              .+..++.++.+      +.|++||++. .....+..|..  .
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~--~  180 (415)
T 2hqs_A          104 PGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQ--P  180 (415)
T ss_dssp             TTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESS--C
T ss_pred             CCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCC--c
Confidence            34555  55889999888888775              15566666554      7999999874 55667777774  4


Q ss_pred             EEEEEEcccCCCCeEEEeecCC---eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCC
Q 021291           65 IVSVATGPSIGLNKVISQGRDG---TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVG  141 (314)
Q Consensus        65 v~~~~~~~~~~~~~l~s~~~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (314)
                      |.+++|+|  +++.|++++.++   .|++||+++++..     .+........  .                        
T Consensus       181 v~~~~~Sp--dg~~la~~s~~~~~~~i~~~d~~tg~~~-----~l~~~~~~~~--~------------------------  227 (415)
T 2hqs_A          181 LMSPAWSP--DGSKLAYVTFESGRSALVIQTLANGAVR-----QVASFPRHNG--A------------------------  227 (415)
T ss_dssp             EEEEEECT--TSSEEEEEECTTSSCEEEEEETTTCCEE-----EEECCSSCEE--E------------------------
T ss_pred             ceeeEEcC--CCCEEEEEEecCCCcEEEEEECCCCcEE-----EeecCCCccc--C------------------------
Confidence            99999999  999999999875   9999999987542     1111111100  0                        


Q ss_pred             ceeeecCCCCCCceeccCCCceEEEeecCcC--eEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCC
Q 021291          142 ETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS--EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQ  219 (314)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~  219 (314)
                                  ++|+|+|+.+++ +++.|+  .|++||+++++. ..+.        .|    ...+.++. |+|+   
T Consensus       228 ------------~~~spdg~~la~-~~~~~g~~~i~~~d~~~~~~-~~l~--------~~----~~~~~~~~-~spd---  277 (415)
T 2hqs_A          228 ------------PAFSPDGSKLAF-ALSKTGSLNLYVMDLASGQI-RQVT--------DG----RSNNTEPT-WFPD---  277 (415)
T ss_dssp             ------------EEECTTSSEEEE-EECTTSSCEEEEEETTTCCE-EECC--------CC----SSCEEEEE-ECTT---
T ss_pred             ------------EEEcCCCCEEEE-EEecCCCceEEEEECCCCCE-EeCc--------CC----CCcccceE-ECCC---
Confidence                        569999987664 444444  599999998775 3444        34    34567777 9998   


Q ss_pred             CceEEEEeec-CC--cEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCC---CcEEEEecCCCeeeEe----
Q 021291          220 GFVNVLAGYE-DG--SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD---QKIVLYNLDHSTYVLF----  289 (314)
Q Consensus       220 g~~~l~~g~~-dg--~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d---g~i~iw~~~~~~~~~~----  289 (314)
                      |+ .|++++. ++  .|++||+.+ ++ ...+..|...+.+++|+|+|++|++++.+   ..|++||+++++....    
T Consensus       278 g~-~l~~~s~~~g~~~i~~~d~~~-~~-~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~  354 (415)
T 2hqs_A          278 SQ-NLAFTSDQAGRPQVYKVNING-GA-PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF  354 (415)
T ss_dssp             SS-EEEEEECTTSSCEEEEEETTS-SC-CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSS
T ss_pred             CC-EEEEEECCCCCcEEEEEECCC-CC-EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCC
Confidence            55 6666655 45  677778876 44 44566677889999999999999888764   5899999998765432    


Q ss_pred             -eeeeeecCCCceec
Q 021291          290 -GIGFVCDQEGNKFG  303 (314)
Q Consensus       290 -~~~~~~~~~~~~~~  303 (314)
                       ....+++|+|..+.
T Consensus       355 ~~~~~~~spdg~~l~  369 (415)
T 2hqs_A          355 LDETPSLAPNGTMVI  369 (415)
T ss_dssp             SCEEEEECTTSSEEE
T ss_pred             CcCCeEEcCCCCEEE
Confidence             23456778887554

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.90  E-value=2.9e-20  Score=152.98  Aligned_cols=261  Identities=11%  Similarity=0.079  Sum_probs=176.9

Q ss_pred             CCCceeEEEEccCCCEEEEecC-------CCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEE-EeecCCeE
Q 021291           17 HRASVTDVCFHQTKPILFAGTT-------GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTV   88 (314)
Q Consensus        17 h~~~v~~~~~~~~~~~l~s~~~-------dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~v   88 (314)
                      ....+..++|+|+++++++++.       ++.|.+||..+++.+..+....   .+..++|+|  +++.++ +...++.|
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~--dg~~l~v~~~~~~~v  113 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL---KPFGATINN--TTQTLWFGNTVNSAV  113 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS---CCCSEEEET--TTTEEEEEETTTTEE
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC---CcceEEECC--CCCEEEEEecCCCEE
Confidence            4467889999999998887764       5689999999999888886543   367899999  888555 55568999


Q ss_pred             EEEeCCCCCCCCCCeeeeecce---------eeEEEeeeeeccccccc-cCCCCcceeeccCCceeeecC-CCC--CCce
Q 021291           89 KCWDIENGGLSSNPSLTIKTNS---------YHFCKLSLVKEPYANAK-QANEPKDCYEREVGETVDTDS-LCD--SKDD  155 (314)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~  155 (314)
                      .+||..+++...  .+......         .....+++......... ........++....+...... .+.  ..++
T Consensus       114 ~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~  191 (353)
T 3vgz_A          114 TAIDAKTGEVKG--RLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLA  191 (353)
T ss_dssp             EEEETTTCCEEE--EEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCE
T ss_pred             EEEeCCCCeeEE--EEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEE
Confidence            999999887543  22221111         22233333332222222 123445666666665443332 222  2299


Q ss_pred             eccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEE
Q 021291          156 VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV  235 (314)
Q Consensus       156 ~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~v  235 (314)
                      |+|+++.+++  ++.++.|.+||+.+++....+..        ...........+. |+|+   |+.++++...++.|.+
T Consensus       192 ~s~dg~~l~~--~~~~~~i~~~d~~~~~~~~~~~~--------~~~~~~~~~~~~~-~s~d---g~~l~~~~~~~~~v~~  257 (353)
T 3vgz_A          192 LDSEGKRLYT--TNADGELITIDTADNKILSRKKL--------LDDGKEHFFINIS-LDTA---RQRAFITDSKAAEVLV  257 (353)
T ss_dssp             EETTTTEEEE--ECTTSEEEEEETTTTEEEEEEEC--------CCSSSCCCEEEEE-EETT---TTEEEEEESSSSEEEE
T ss_pred             ECCCCCEEEE--EcCCCeEEEEECCCCeEEEEEEc--------CCCCCCcccceEE-ECCC---CCEEEEEeCCCCEEEE
Confidence            9999987665  33479999999999988877662        1111233566676 9998   5534455555699999


Q ss_pred             EEccCCCCceEeeecCCcceEEEEEeCCCCeE-EEecCCCcEEEEecCCCeeeEe------eeeeeecCCCce
Q 021291          236 WDIRNPGIPLTAMKVHLEPVLCLSIDESCNGG-ISGGADQKIVLYNLDHSTYVLF------GIGFVCDQEGNK  301 (314)
Q Consensus       236 wd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~s~dg~i~iw~~~~~~~~~~------~~~~~~~~~~~~  301 (314)
                      ||..+ ++.+..+.... + ..++|+|+++++ ++...++.|.+||+.+++.+..      ..+++++++|..
T Consensus       258 ~d~~~-~~~~~~~~~~~-~-~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~  327 (353)
T 3vgz_A          258 VDTRN-GNILAKVAAPE-S-LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKT  327 (353)
T ss_dssp             EETTT-CCEEEEEECSS-C-CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCE
T ss_pred             EECCC-CcEEEEEEcCC-C-ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCE
Confidence            99988 77777776533 2 579999999865 5555789999999999887654      345667888873

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.89  E-value=5.5e-21  Score=165.67  Aligned_cols=251  Identities=11%  Similarity=-0.001  Sum_probs=173.8

Q ss_pred             EEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeC--CCCCCCCCC
Q 021291           25 CFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI--ENGGLSSNP  102 (314)
Q Consensus        25 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~--~~~~~~~~~  102 (314)
                      +|+|++.++++++.|++|.+||..+++++.++..+.  . +..++|+|  ++++|++++.|++|.+||+  .+++++.  
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~--~-~~~v~~sp--dg~~l~v~~~d~~V~v~D~~~~t~~~~~--  216 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY--A-VHISRMSA--SGRYLLVIGRDARIDMIDLWAKEPTKVA--  216 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECST--T-EEEEEECT--TSCEEEEEETTSEEEEEETTSSSCEEEE--
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCc--c-cceEEECC--CCCEEEEECCCCeEEEEECcCCCCcEEE--
Confidence            488999999999999999999999999999987443  2 88999999  9999999999999999999  6665432  


Q ss_pred             eeeeecc-eeeEEEeee----eeccccccccCCCCcceeeccCCceeeecCC-C--------CC--C---ceeccCCCce
Q 021291          103 SLTIKTN-SYHFCKLSL----VKEPYANAKQANEPKDCYEREVGETVDTDSL-C--------DS--K---DDVPAEGPKY  163 (314)
Q Consensus       103 ~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------~~--~---~~~~~~~~~~  163 (314)
                        ++... ......+++    .+..............+|+....+.+..... +        |.  .   +.++|++..+
T Consensus       217 --~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~  294 (543)
T 1nir_A          217 --EIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEF  294 (543)
T ss_dssp             --EEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEE
T ss_pred             --EEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEE
Confidence              33322 223334444    3333333333455667777766654432211 1        11  1   7889988876


Q ss_pred             EEEeecCcCeEEEEecCCCceee--eecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCC
Q 021291          164 MAVAGEQLSEVEIWDLNTAERCT--RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP  241 (314)
Q Consensus       164 ~~~~g~~d~~i~vwd~~~~~~~~--~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~  241 (314)
                      ++ +...++.|.+||+.+.+.+.  .+.         +    ......+. |+|+   |+++++++..+++|.+||+.+ 
T Consensus       295 ~v-s~~~~g~i~vvd~~~~~~l~~~~i~---------~----~~~~~~~~-~spd---g~~l~va~~~~~~v~v~D~~t-  355 (543)
T 1nir_A          295 IV-NVKETGKVLLVNYKDIDNLTVTSIG---------A----APFLHDGG-WDSS---HRYFMTAANNSNKVAVIDSKD-  355 (543)
T ss_dssp             EE-EETTTTEEEEEECTTSSSCEEEEEE---------C----CSSCCCEE-ECTT---SCEEEEEEGGGTEEEEEETTT-
T ss_pred             EE-EECCCCeEEEEEecCCCcceeEEec---------c----CcCccCce-ECCC---CCEEEEEecCCCeEEEEECCC-
Confidence            65 56778999999998876544  222         1    22345565 9998   664555666789999999998 


Q ss_pred             CCceEeeec----CCcceEEEEEeCC-CCeEEEec-CCCcEEEEecCC-------CeeeEeee-------eeeecCCCce
Q 021291          242 GIPLTAMKV----HLEPVLCLSIDES-CNGGISGG-ADQKIVLYNLDH-------STYVLFGI-------GFVCDQEGNK  301 (314)
Q Consensus       242 ~~~~~~~~~----h~~~v~~~~~~~~-~~~l~s~s-~dg~i~iw~~~~-------~~~~~~~~-------~~~~~~~~~~  301 (314)
                      ++++..+..    |......+ ++|+ +..+++++ .|++|.+||+++       .+.+..+.       .+.++|++..
T Consensus       356 g~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~  434 (543)
T 1nir_A          356 RRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSH  434 (543)
T ss_dssp             TEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCE
T ss_pred             CeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCc
Confidence            788877774    55444443 4776 66677775 689999999998       56555532       2556777766


Q ss_pred             ece
Q 021291          302 FGT  304 (314)
Q Consensus       302 ~~~  304 (314)
                      +..
T Consensus       435 l~v  437 (543)
T 1nir_A          435 LYV  437 (543)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.89  E-value=1.6e-20  Score=153.85  Aligned_cols=252  Identities=13%  Similarity=0.118  Sum_probs=156.0

Q ss_pred             CCCCceeEEEEccCCCEEEEecCC-CeEEEEeCC--CCe--EEEEEeccCCcccEEEEEEcccCCCCeEEEeec-CCeEE
Q 021291           16 GHRASVTDVCFHQTKPILFAGTTG-GELRIWDTV--QHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-DGTVK   89 (314)
Q Consensus        16 ~h~~~v~~~~~~~~~~~l~s~~~d-g~v~iwd~~--~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~v~   89 (314)
                      .|...+.+++|+|+|++|++++.+ +.|.+|+++  +++  .+..+..+.   .+..++|+|  ++++|++++. ++.|.
T Consensus        35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~s~--dg~~l~~~~~~~~~i~  109 (343)
T 1ri6_A           35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG---SLTHISTDH--QGQFVFVGSYNAGNVS  109 (343)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS---CCSEEEECT--TSSEEEEEETTTTEEE
T ss_pred             ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC---CCcEEEEcC--CCCEEEEEecCCCeEE
Confidence            477889999999999988888776 999999987  554  334444332   488999999  9898876654 88999


Q ss_pred             EEeCCCCCCCCCCeeeeecc-eeeEEEeeeeeccccccccCCCCcceeeccC-Ccee-----eecCCCCCC---ceeccC
Q 021291           90 CWDIENGGLSSNPSLTIKTN-SYHFCKLSLVKEPYANAKQANEPKDCYEREV-GETV-----DTDSLCDSK---DDVPAE  159 (314)
Q Consensus        90 iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~---~~~~~~  159 (314)
                      +||+..+.... ........ ......+++................+|++.. ....     .........   ++|+|+
T Consensus       110 ~~d~~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd  188 (343)
T 1ri6_A          110 VTRLEDGLPVG-VVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPN  188 (343)
T ss_dssp             EEEEETTEEEE-EEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTT
T ss_pred             EEECCCCcccc-ccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCC
Confidence            99995322110 01111111 1222233333322222222345566777765 3321     111111122   889999


Q ss_pred             CCceEEEeecCcCeEEEEecCC--Cce--eeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEE
Q 021291          160 GPKYMAVAGEQLSEVEIWDLNT--AER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV  235 (314)
Q Consensus       160 ~~~~~~~~g~~d~~i~vwd~~~--~~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~v  235 (314)
                      ++.+++ ++..++.|.+||+..  ++.  ...+..    ...++.  ....+..+. |+|+   |+.+++++..++.|++
T Consensus       189 g~~l~~-~~~~~~~i~~~~~~~~~g~~~~~~~~~~----~~~~~~--~~~~~~~i~-~s~d---g~~l~v~~~~~~~i~v  257 (343)
T 1ri6_A          189 EQYAYC-VNELNSSVDVWELKDPHGNIECVQTLDM----MPENFS--DTRWAADIH-ITPD---GRHLYACDRTASLITV  257 (343)
T ss_dssp             SSEEEE-EETTTTEEEEEESSCTTSCCEEEEEEEC----SCTTCC--SCCCEEEEE-ECTT---SSEEEEEETTTTEEEE
T ss_pred             CCEEEE-EeCCCCEEEEEEecCCCCcEEEEeeccc----cCcccc--ccCCccceE-ECCC---CCEEEEEecCCCEEEE
Confidence            987665 455689999999953  332  122210    000111  122455676 9998   5534556668999999


Q ss_pred             EEccCC---CCceEeeecCCcceEEEEEeCCCCeEEEec-CCCcEEEEecC--CCe
Q 021291          236 WDIRNP---GIPLTAMKVHLEPVLCLSIDESCNGGISGG-ADQKIVLYNLD--HST  285 (314)
Q Consensus       236 wd~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s-~dg~i~iw~~~--~~~  285 (314)
                      ||+...   .+.+..+..+.. +..++|+|++++|++++ .++.|.+|+++  +++
T Consensus       258 ~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~  312 (343)
T 1ri6_A          258 FSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGL  312 (343)
T ss_dssp             EEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTE
T ss_pred             EEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCce
Confidence            999831   234444554444 88999999999887777 68999999554  554

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.88  E-value=6.2e-20  Score=149.78  Aligned_cols=239  Identities=10%  Similarity=0.045  Sum_probs=156.5

Q ss_pred             EEccCCC-EEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeec-CCeEEEEeCCCCCC-CCC
Q 021291           25 CFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-DGTVKCWDIENGGL-SSN  101 (314)
Q Consensus        25 ~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~v~iwd~~~~~~-~~~  101 (314)
                      .|.++++ .+++++.++.|++||..+++.+..+..+.  ..+ .++|+|  +++++++++. ++.|.+||+.+++. .. 
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~-~~~~s~--dg~~l~~~~~~~~~i~~~d~~~~~~~~~-   77 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGY--DFV-DTAITS--DCSNVVVTSDFCQTLVQIETQLEPPKVV-   77 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCC--CEE-EEEECS--SSCEEEEEESTTCEEEEEECSSSSCEEE-
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccC--Ccc-eEEEcC--CCCEEEEEeCCCCeEEEEECCCCceeEE-
Confidence            4555544 57788899999999999999988887655  346 999999  9887776655 89999999998865 22 


Q ss_pred             CeeeeecceeeEEEeeeeeccccccccCC-C--CcceeeccCCceeeecCCCCCC--ceeccCCCceEEEeecCcCe-EE
Q 021291          102 PSLTIKTNSYHFCKLSLVKEPYANAKQAN-E--PKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMAVAGEQLSE-VE  175 (314)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~d~~-i~  175 (314)
                       .......+.....+++.+.... ..... .  ...+|++...........+...  ++|+|+|+.++++ +..++. |.
T Consensus        78 -~~~~~~~~~~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~-~~~~~~~i~  154 (331)
T 3u4y_A           78 -AIQEGQSSMADVDITPDDQFAV-TVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILI-DRSSANTVR  154 (331)
T ss_dssp             -EEEECSSCCCCEEECTTSSEEE-ECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEE-EETTTTEEE
T ss_pred             -ecccCCCCccceEECCCCCEEE-EecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEE-ecCCCceEE
Confidence             2222222222134444443333 22222 2  5667777766544432222222  9999999877664 444577 99


Q ss_pred             EEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCc---eEeeecCC
Q 021291          176 IWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP---LTAMKVHL  252 (314)
Q Consensus       176 vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~---~~~~~~h~  252 (314)
                      +|++.....+.....       .. .........+. |+|+   |+.+++++..++.|++||+.+ ++.   +..+.. .
T Consensus       155 ~~~~~~~g~~~~~~~-------~~-~~~~~~~~~~~-~spd---g~~l~v~~~~~~~v~v~d~~~-~~~~~~~~~~~~-~  220 (331)
T 3u4y_A          155 RFKIDADGVLFDTGQ-------EF-ISGGTRPFNIT-FTPD---GNFAFVANLIGNSIGILETQN-PENITLLNAVGT-N  220 (331)
T ss_dssp             EEEECTTCCEEEEEE-------EE-ECSSSSEEEEE-ECTT---SSEEEEEETTTTEEEEEECSS-TTSCEEEEEEEC-S
T ss_pred             EEEECCCCcEeecCC-------cc-ccCCCCccceE-ECCC---CCEEEEEeCCCCeEEEEECCC-CcccceeeeccC-C
Confidence            999875443321110       00 00122356676 9998   653556666789999999987 666   666664 4


Q ss_pred             cceEEEEEeCCCCeEEEe-cCCCcEEEEecCCCee
Q 021291          253 EPVLCLSIDESCNGGISG-GADQKIVLYNLDHSTY  286 (314)
Q Consensus       253 ~~v~~~~~~~~~~~l~s~-s~dg~i~iw~~~~~~~  286 (314)
                      ..+..++|+|+|++|+.+ ..++.|.+||+.+++.
T Consensus       221 ~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~  255 (331)
T 3u4y_A          221 NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL  255 (331)
T ss_dssp             SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred             CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce
Confidence            667899999999976554 4578899999998876

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.88  E-value=3e-20  Score=152.71  Aligned_cols=224  Identities=10%  Similarity=0.101  Sum_probs=146.5

Q ss_pred             ceEEecCCCCceeEEEEccCCCEEEEec-CCCeEEEEeCCC-C--eEEEEEeccC-------CcccEEEEEEcccCCCCe
Q 021291           10 PVAVLRGHRASVTDVCFHQTKPILFAGT-TGGELRIWDTVQ-H--RTVSSSWVHS-------AAHGIVSVATGPSIGLNK   78 (314)
Q Consensus        10 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~-~dg~v~iwd~~~-~--~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~   78 (314)
                      .+..+..|...+..++|+|+|++|++++ .++.|.+|++.. +  +.+..+....       ....+.+++|+|  +++.
T Consensus        77 ~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp--dg~l  154 (347)
T 3hfq_A           77 KLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP--DNRL  154 (347)
T ss_dssp             EEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT--TSCE
T ss_pred             EeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC--CCcE
Confidence            3444455778899999999999888877 789999999863 3  3333332211       112488999999  9886


Q ss_pred             EEEeecCCeEEEEeCC-CCCCCCCCeeeeec--ceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCce
Q 021291           79 VISQGRDGTVKCWDIE-NGGLSSNPSLTIKT--NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDD  155 (314)
Q Consensus        79 l~s~~~dg~v~iwd~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (314)
                      +++...++.|.+||+. ++++..  ......  .....                                       .++
T Consensus       155 ~v~~~~~~~v~~~~~~~~g~~~~--~~~~~~~~g~~p~---------------------------------------~~~  193 (347)
T 3hfq_A          155 AVIDLGSDKVYVYNVSDAGQLSE--QSVLTMEAGFGPR---------------------------------------HLV  193 (347)
T ss_dssp             EEEETTTTEEEEEEECTTSCEEE--EEEEECCTTCCEE---------------------------------------EEE
T ss_pred             EEEeCCCCEEEEEEECCCCcEEE--eeeEEcCCCCCCc---------------------------------------eEE
Confidence            6666678899999998 333211  000000  00000                                       057


Q ss_pred             eccCCCceEEEeecCcCeEEEEecCC--Cce--eeeecccccCCCCCcCC--CCCceeeeEEEecCCCCCCceEEEEeec
Q 021291          156 VPAEGPKYMAVAGEQLSEVEIWDLNT--AER--CTRLHQNSCGGSPNFSS--KGRGMCMAVQAYLPSKSQGFVNVLAGYE  229 (314)
Q Consensus       156 ~~~~~~~~~~~~g~~d~~i~vwd~~~--~~~--~~~~~~~~~~~~~~h~~--~~~~~~~~~~~~~p~~~~g~~~l~~g~~  229 (314)
                      |+|+|+.+++ ++..++.|.+|++..  ++.  ...+.        ....  .....+..+. |+|+   |+.++++...
T Consensus       194 ~spdg~~l~v-~~~~~~~v~v~~~~~~~g~~~~~~~~~--------~~~~~~~~~~~~~~i~-~spd---G~~l~v~~~~  260 (347)
T 3hfq_A          194 FSPDGQYAFL-AGELSSQIASLKYDTQTGAFTQLGIVK--------TIPADYTAHNGAAAIR-LSHD---GHFLYVSNRG  260 (347)
T ss_dssp             ECTTSSEEEE-EETTTTEEEEEEEETTTTEEEEEEEEE--------SSCTTCCSCCEEEEEE-ECTT---SCEEEEEEET
T ss_pred             ECCCCCEEEE-EeCCCCEEEEEEecCCCCceEEeeeee--------ecCCCCCCCCcceeEE-ECCC---CCEEEEEeCC
Confidence            9999986665 556679999999874  432  12222        1110  0113567777 9998   6634466677


Q ss_pred             CCcEEEEEccCCC--CceEeeecCCcceEEEEEeCCCCeEEEecC-CCcEEEEec--CCCeeeEe
Q 021291          230 DGSILVWDIRNPG--IPLTAMKVHLEPVLCLSIDESCNGGISGGA-DQKIVLYNL--DHSTYVLF  289 (314)
Q Consensus       230 dg~i~vwd~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-dg~i~iw~~--~~~~~~~~  289 (314)
                      ++.|.+||+...+  ..+..+..+...+..++|+|+|++|++++. ++.|.+|++  ++++....
T Consensus       261 ~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~~  325 (347)
T 3hfq_A          261 YNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSLL  325 (347)
T ss_dssp             TTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE
T ss_pred             CCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEec
Confidence            8999999997322  445556666777899999999998877765 489999954  55655443

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.87  E-value=2.7e-21  Score=163.28  Aligned_cols=204  Identities=13%  Similarity=0.077  Sum_probs=141.4

Q ss_pred             CCCceeEEEEccCCCEEEEecCCCeEEEEeCCCC----------eEEEEE-----eccCCcccEEEEEEcccCCCCeEE-
Q 021291           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH----------RTVSSS-----WVHSAAHGIVSVATGPSIGLNKVI-   80 (314)
Q Consensus        17 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~----------~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~l~-   80 (314)
                      +...++.+++++++.++++++.|+ ++||+....          ..+...     ..+.  ..|.+++|+|  ++++|+ 
T Consensus        35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~l~~sp--dg~~lav  109 (434)
T 2oit_A           35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMK--FPIHHLALSC--DNLTLSA  109 (434)
T ss_dssp             CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCS--SCEEEEEECT--TSCEEEE
T ss_pred             CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCC--CcccEEEEcC--CCCEEEE
Confidence            345689999999999999999998 899874311          011110     1123  4599999999  999999 


Q ss_pred             ---EeecCCeEEEEeCCCCCC----CCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC
Q 021291           81 ---SQGRDGTVKCWDIENGGL----SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK  153 (314)
Q Consensus        81 ---s~~~dg~v~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (314)
                         +++.|++|++||+++...    ..++......                                       +.+|..
T Consensus       110 ~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~---------------------------------------~~~h~~  150 (434)
T 2oit_A          110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKL---------------------------------------LKDAGG  150 (434)
T ss_dssp             EEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEEC---------------------------------------CCSGGG
T ss_pred             EEeccCCCceEEEEEccccccCCcCCcceeeeeec---------------------------------------cCCCCC
Confidence               889999999999876410    0011111111                                       111111


Q ss_pred             ----ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeec
Q 021291          154 ----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE  229 (314)
Q Consensus       154 ----~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~  229 (314)
                          ++|+|++..+++ +++.||+|++||++++.......        +|    ...+.+++ |+|+   |. +|++|+.
T Consensus       151 ~V~~v~~~p~~~~~la-s~s~Dg~v~iwD~~~~~~~~~~~--------~~----~~~v~~v~-wspd---g~-~lasgs~  212 (434)
T 2oit_A          151 MVIDMKWNPTVPSMVA-VCLADGSIAVLQVTETVKVCATL--------PS----TVAVTSVC-WSPK---GK-QLAVGKQ  212 (434)
T ss_dssp             SEEEEEECSSCTTEEE-EEETTSCEEEEEESSSEEEEEEE--------CG----GGCEEEEE-ECTT---SS-CEEEEET
T ss_pred             ceEEEEECCCCCCEEE-EEECCCeEEEEEcCCCcceeecc--------CC----CCceeEEE-EcCC---CC-EEEEEcC
Confidence                679998555565 56679999999999886655444        44    44688887 9998   55 8999999


Q ss_pred             CCcEEEEEccCCCCceEeeecC-------CcceEEEEEeCCCCeEEEe-cCCC------cEEEEecCCC
Q 021291          230 DGSILVWDIRNPGIPLTAMKVH-------LEPVLCLSIDESCNGGISG-GADQ------KIVLYNLDHS  284 (314)
Q Consensus       230 dg~i~vwd~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~l~s~-s~dg------~i~iw~~~~~  284 (314)
                      ||.|++||.+  +.....+..|       ...|.+++|++++.++++. +.||      .+++|++...
T Consensus       213 dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          213 NGTVVQYLPT--LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             TSCEEEECTT--CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             CCcEEEEccC--CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            9999999998  3444444433       3389999999998877443 3343      3899999865

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.87  E-value=4.4e-20  Score=166.72  Aligned_cols=238  Identities=9%  Similarity=-0.055  Sum_probs=164.9

Q ss_pred             CCceeEEEEccCCCEEEEecC-CC-----eEEEEeCCCCeEEEEEeccCCc----------------------ccEEEEE
Q 021291           18 RASVTDVCFHQTKPILFAGTT-GG-----ELRIWDTVQHRTVSSSWVHSAA----------------------HGIVSVA   69 (314)
Q Consensus        18 ~~~v~~~~~~~~~~~l~s~~~-dg-----~v~iwd~~~~~~~~~~~~~~~~----------------------~~v~~~~   69 (314)
                      ...|.+++|+|||++|++++. |+     .|++||+.+++....+..+...                      ..|.+++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            456899999999999999998 88     9999999999887777655432                      2378999


Q ss_pred             EcccCCCCeEEEeecCCeEEEEeCCCC---CCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeee
Q 021291           70 TGPSIGLNKVISQGRDGTVKCWDIENG---GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDT  146 (314)
Q Consensus        70 ~~~~~~~~~l~s~~~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (314)
                      |+|  |+++|++++. +.|.+||+.++   +...   +...........+++.+.......  .....++++..+.....
T Consensus       116 ~Sp--Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~---l~~~~~~~~~~~~SPDG~~la~~~--~~~i~~~d~~~g~~~~~  187 (741)
T 2ecf_A          116 WSP--DAQRLLFPLG-GELYLYDLKQEGKAAVRQ---LTHGEGFATDAKLSPKGGFVSFIR--GRNLWVIDLASGRQMQL  187 (741)
T ss_dssp             ECT--TSSEEEEEET-TEEEEEESSSCSTTSCCB---CCCSSSCEEEEEECTTSSEEEEEE--TTEEEEEETTTTEEEEC
T ss_pred             ECC--CCCEEEEEeC-CcEEEEECCCCCcceEEE---cccCCcccccccCCCCCCEEEEEe--CCcEEEEecCCCCEEEe
Confidence            999  9999999886 89999999987   4321   222223344455555544333222  23455666655543332


Q ss_pred             cCCCC-------------------CCceeccCCCceEEEeecCcC---------------------------------eE
Q 021291          147 DSLCD-------------------SKDDVPAEGPKYMAVAGEQLS---------------------------------EV  174 (314)
Q Consensus       147 ~~~~~-------------------~~~~~~~~~~~~~~~~g~~d~---------------------------------~i  174 (314)
                      ...+.                   ..++|+|||+.++.++.  |+                                 .|
T Consensus       188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~--d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l  265 (741)
T 2ecf_A          188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARI--DESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL  265 (741)
T ss_dssp             CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEE--ECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred             ccCCccceeccccceeeeeccccccceEECCCCCEEEEEEE--cCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence            22222                   22899999998765432  33                                 78


Q ss_pred             EEEecCC-CceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeec-----CCcEEEEEccCCCCceEee
Q 021291          175 EIWDLNT-AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE-----DGSILVWDIRNPGIPLTAM  248 (314)
Q Consensus       175 ~vwd~~~-~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~-----dg~i~vwd~~~~~~~~~~~  248 (314)
                      .+||+.+ ++......        +  ......+..+. | ||   |+ .|+++..     +..|++||+.+ ++....+
T Consensus       266 ~~~d~~~~~~~~~~~~--------~--~~~~~~~~~~~-~-pD---g~-~l~~~~~~~~~~~~~i~~~d~~~-g~~~~~~  328 (741)
T 2ecf_A          266 GVISPAEQAQTQWIDL--------G--KEQDIYLARVN-W-RD---PQ-HLSFQRQSRDQKKLDLVEVTLAS-NQQRVLA  328 (741)
T ss_dssp             EEECSSTTCCCEEECC--------C--SCSSEEEEEEE-E-EE---TT-EEEEEEEETTSSEEEEEEEETTT-CCEEEEE
T ss_pred             EEEECCCCCceEEecC--------C--CCcceEEEEEE-e-CC---CC-EEEEEEecccCCeEEEEEEECCC-CceEEEE
Confidence            8999988 76543322        1  01245677887 9 98   55 5665443     56899999998 6666666


Q ss_pred             ecCCc----ceEEEEEeCCCCeEEEecCCCcEEEEecC
Q 021291          249 KVHLE----PVLCLSIDESCNGGISGGADQKIVLYNLD  282 (314)
Q Consensus       249 ~~h~~----~v~~~~~~~~~~~l~s~s~dg~i~iw~~~  282 (314)
                      ..+..    .+..++|+|+|+++++++.||.++||.++
T Consensus       329 ~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~  366 (741)
T 2ecf_A          329 HETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRID  366 (741)
T ss_dssp             EEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEEC
T ss_pred             EcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEc
Confidence            65543    45689999999999999999988888776

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.87  E-value=1.2e-19  Score=148.30  Aligned_cols=254  Identities=10%  Similarity=0.040  Sum_probs=171.7

Q ss_pred             CCceEEecCCC-C-ceeEEEEccCCCEE-EEecCCCeEEEEeCCCCeEEEEEeccCC---cccEEEEEEcccCCCCeEEE
Q 021291            8 PDPVAVLRGHR-A-SVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHSA---AHGIVSVATGPSIGLNKVIS   81 (314)
Q Consensus         8 ~~~~~~l~~h~-~-~v~~~~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~l~s   81 (314)
                      ++.++.+.... . .+..++|+|+|+++ +++..++.|.+||+.+++.+..+.....   ...+.+++|+|  ++++|++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~   98 (337)
T 1pby_B           21 MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP--DGKTLAI   98 (337)
T ss_dssp             TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECT--TSSEEEE
T ss_pred             CcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECC--CCCEEEE
Confidence            35566665322 2 58899999999765 5667789999999999988877764220   01367899999  9988888


Q ss_pred             ee------------cCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCC
Q 021291           82 QG------------RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSL  149 (314)
Q Consensus        82 ~~------------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (314)
                      ++            .++.|.+||+.+++...  .+.. ........+++........   .....++++...........
T Consensus        99 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~--~~~~-~~~~~~~~~s~dg~~l~~~---~~~i~~~d~~~~~~~~~~~~  172 (337)
T 1pby_B           99 YESPVRLELTHFEVQPTRVALYDAETLSRRK--AFEA-PRQITMLAWARDGSKLYGL---GRDLHVMDPEAGTLVEDKPI  172 (337)
T ss_dssp             EEEEEEECSSCEEECCCEEEEEETTTTEEEE--EEEC-CSSCCCEEECTTSSCEEEE---SSSEEEEETTTTEEEEEECS
T ss_pred             EecccccccccccccCceEEEEECCCCcEEE--EEeC-CCCcceeEECCCCCEEEEe---CCeEEEEECCCCcEeeeeec
Confidence            86            57999999998876432  1111 1122223333333222212   45566777776654433322


Q ss_pred             CC--CCceeccCCCceEEEeecCcC-----------------------eEEEEecCCCceeeeecccccCCCCCcCCCCC
Q 021291          150 CD--SKDDVPAEGPKYMAVAGEQLS-----------------------EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGR  204 (314)
Q Consensus       150 ~~--~~~~~~~~~~~~~~~~g~~d~-----------------------~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~  204 (314)
                      ..  ....|+|++..+++ ++..++                       .|.+||+.+++.. .+...      .+    .
T Consensus       173 ~~~~~~~~~s~dg~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~------~~----~  240 (337)
T 1pby_B          173 QSWEAETYAQPDVLAVWN-QHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVR------IM----D  240 (337)
T ss_dssp             TTTTTTTBCCCBCCCCCC-CCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEE------EC----S
T ss_pred             cccCCCceeCCCccEEee-eccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecC------CC----C
Confidence            22  22789999987654 333333                       4689999988765 33210      12    2


Q ss_pred             ceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCC
Q 021291          205 GMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS  284 (314)
Q Consensus       205 ~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~  284 (314)
                      .....+. |+|+   |+ +++++  ++.|++||+.+ ++.+..+.. ...+.+++|+|++++|++++.++.|++||++++
T Consensus       241 ~~~~~~~-~s~d---g~-~l~~~--~~~v~~~d~~~-~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~  311 (337)
T 1pby_B          241 VFYFSTA-VNPA---KT-RAFGA--YNVLESFDLEK-NASIKRVPL-PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL  311 (337)
T ss_dssp             SCEEEEE-ECTT---SS-EEEEE--ESEEEEEETTT-TEEEEEEEC-SSCCCEEEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred             CceeeEE-ECCC---CC-EEEEe--CCeEEEEECCC-CcCcceecC-CCceeeEEECCCCCEEEEEcCCCcEEEEECcCC
Confidence            3456676 9998   55 66666  68999999987 777776664 356789999999999998999999999999999


Q ss_pred             eeeEee
Q 021291          285 TYVLFG  290 (314)
Q Consensus       285 ~~~~~~  290 (314)
                      +.+..+
T Consensus       312 ~~~~~~  317 (337)
T 1pby_B          312 EKKGQV  317 (337)
T ss_dssp             CEEEEE
T ss_pred             cEEEEE
Confidence            877654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.86  E-value=1.5e-20  Score=165.17  Aligned_cols=251  Identities=8%  Similarity=-0.022  Sum_probs=166.9

Q ss_pred             CCceeEEEEccCCCEEEEecC-CCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeec---CCeEEEEeC
Q 021291           18 RASVTDVCFHQTKPILFAGTT-GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR---DGTVKCWDI   93 (314)
Q Consensus        18 ~~~v~~~~~~~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~v~iwd~   93 (314)
                      ..+|.+++|+|||++||+++. ||+++||++++++..+ +..+.. ..+..++|+|  | +.+++++.   +...++|.+
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~-~~~~~~~~sp--d-~~l~~~~~~~g~~~~~l~~~   95 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPI-NSVLDPHYGV--G-RVILVRDVSKGAEQHALFKV   95 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCC-SEECEECTTC--S-EEEEEEECSTTSCCEEEEEE
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccc-cccccccCCC--C-eEEEEeccCCCCcceEEEEE
Confidence            567999999999999999887 9999999997666544 433331 3489999999  8 77777765   455666655


Q ss_pred             CC--CCCCCCCeeeee-cceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecC
Q 021291           94 EN--GGLSSNPSLTIK-TNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ  170 (314)
Q Consensus        94 ~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  170 (314)
                      ..  ....   . .+. ........+++.+..............+|++..+.............+|+|||+.++.++  .
T Consensus        96 ~~~~~g~~---~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~~~~~~spDG~~la~~~--~  169 (582)
T 3o4h_A           96 NTSRPGEE---Q-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLG--F  169 (582)
T ss_dssp             ETTSTTCC---E-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEE--E
T ss_pred             eccCCCcc---c-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCCceEEECCCCCEEEEEE--E
Confidence            43  1111   1 111 112223355555544333333344444777766543222111112388999998765432  2


Q ss_pred             c----CeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCC--cEEEEEccCCCCc
Q 021291          171 L----SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG--SILVWDIRNPGIP  244 (314)
Q Consensus       171 d----~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg--~i~vwd~~~~~~~  244 (314)
                      +    +.|++||+.+++.. .+.        .|    .+.+..+. |+||   |+ .|+++..++  .|++||+.+ ++.
T Consensus       170 ~~~~~~~i~~~d~~~g~~~-~l~--------~~----~~~~~~~~-~SpD---G~-~l~~~~~~~~~~i~~~d~~~-~~~  230 (582)
T 3o4h_A          170 FGGGRVSLFTSNLSSGGLR-VFD--------SG----EGSFSSAS-ISPG---MK-VTAGLETAREARLVTVDPRD-GSV  230 (582)
T ss_dssp             EETTEEEEEEEETTTCCCE-EEC--------CS----SCEEEEEE-ECTT---SC-EEEEEECSSCEEEEEECTTT-CCE
T ss_pred             cCCCCeEEEEEcCCCCCce-Eee--------cC----CCccccce-ECCC---CC-EEEEccCCCeeEEEEEcCCC-CcE
Confidence            3    67999999888754 444        34    34567777 9998   65 777888888  899999987 666


Q ss_pred             eEeeecCCcceEEEE--------EeCCCCeEEEecCCCcEEEEecCCCeeeEe----eeeeeecCCCcee
Q 021291          245 LTAMKVHLEPVLCLS--------IDESCNGGISGGADQKIVLYNLDHSTYVLF----GIGFVCDQEGNKF  302 (314)
Q Consensus       245 ~~~~~~h~~~v~~~~--------~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~----~~~~~~~~~~~~~  302 (314)
                      . .+.+|...+..++        |+|+|.++++++.|+.+++|++  ++....    ...++++ ++..+
T Consensus       231 ~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~~~~~v~~~~~s-dg~~l  296 (582)
T 3o4h_A          231 E-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEAPQGNHGRVVLW-RGKLV  296 (582)
T ss_dssp             E-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECCCSSEEEEEEEE-TTEEE
T ss_pred             E-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeeccCCCceEEEEec-CCEEE
Confidence            5 7777877777777        9999988899999999999999  554421    2344555 55544

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.86  E-value=6.2e-20  Score=165.73  Aligned_cols=263  Identities=12%  Similarity=0.018  Sum_probs=169.2

Q ss_pred             ceeEEEEccCCCEEEEecCCCeEEEEeCCCCe--EEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCC
Q 021291           20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG   97 (314)
Q Consensus        20 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~   97 (314)
                      .|.+++|+|||++|++++. +.|++||+.++.  ....+..+.  ..+.+++|+|  ||++|+.++ ++.|++||+.+++
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~--~~~~~~~~SP--DG~~la~~~-~~~i~~~d~~~g~  183 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGE--GFATDAKLSP--KGGFVSFIR-GRNLWVIDLASGR  183 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSS--SCEEEEEECT--TSSEEEEEE-TTEEEEEETTTTE
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCC--cccccccCCC--CCCEEEEEe-CCcEEEEecCCCC
Confidence            4899999999999998886 899999998872  334455565  4499999999  999999887 4699999998875


Q ss_pred             CCCCCeeeeecce----------------eeEEEeeeeeccccccccCCC------------------------------
Q 021291           98 LSSNPSLTIKTNS----------------YHFCKLSLVKEPYANAKQANE------------------------------  131 (314)
Q Consensus        98 ~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~------------------------------  131 (314)
                      ...  +.......                .....+++.+...........                              
T Consensus       184 ~~~--~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~  261 (741)
T 2ecf_A          184 QMQ--LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV  261 (741)
T ss_dssp             EEE--CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred             EEE--eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence            322  11111100                122334444333322222111                              


Q ss_pred             --CcceeeccC-CceeeecCC-CCCC----ceeccCCCceEEEee---cCcCeEEEEecCCCceeeeecccccCCCCCcC
Q 021291          132 --PKDCYEREV-GETVDTDSL-CDSK----DDVPAEGPKYMAVAG---EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFS  200 (314)
Q Consensus       132 --~~~~~~~~~-~~~~~~~~~-~~~~----~~~~~~~~~~~~~~g---~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~  200 (314)
                        ...++++.. ......... .+..    ++| |+|+.+++.+.   ..+..|++||+.+++....+.        .+.
T Consensus       262 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~--------~~~  332 (741)
T 2ecf_A          262 QVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAH--------ETS  332 (741)
T ss_dssp             EEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEE--------EEC
T ss_pred             eeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEE--------cCC
Confidence              223344444 332222211 2333    899 99988776443   235789999999988766665        222


Q ss_pred             CCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEE-EEeCCCCeEE-EecCCC--cE
Q 021291          201 SKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCL-SIDESCNGGI-SGGADQ--KI  276 (314)
Q Consensus       201 ~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~-~~~~~~~~l~-s~s~dg--~i  276 (314)
                      ......+..+. |+|+   |+ ++++++.||.++||.++..+. ...+..|...|..+ .|+|+++.|+ +++.++  .+
T Consensus       333 ~~~~~~~~~~~-~spd---g~-~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~  406 (741)
T 2ecf_A          333 PTWVPLHNSLR-FLDD---GS-ILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARES  406 (741)
T ss_dssp             SSCCCCCSCCE-ECTT---SC-EEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCB
T ss_pred             CCcCCcCCceE-ECCC---Ce-EEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceE
Confidence            11011233555 9998   66 888899999888887764355 77788888889887 5999998764 555565  89


Q ss_pred             EEEecCC-CeeeEe------eeeeeecCCCceecee
Q 021291          277 VLYNLDH-STYVLF------GIGFVCDQEGNKFGTT  305 (314)
Q Consensus       277 ~iw~~~~-~~~~~~------~~~~~~~~~~~~~~~~  305 (314)
                      ++|+++. ++....      ....+++|+|..++..
T Consensus       407 ~l~~~~~~g~~~~~l~~~~~~~~~~~spdg~~l~~~  442 (741)
T 2ecf_A          407 QIYAVPLQGGQPQRLSKAPGMHSASFARNASVYVDS  442 (741)
T ss_dssp             EEEEEETTCCCCEECCCSCSEEEEEECTTSSEEEEE
T ss_pred             EEEEEEcCCCCeeecccCCCceEEEECCCCCEEEEE
Confidence            9999864 332222      2245677888766543

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.85  E-value=5.3e-20  Score=165.69  Aligned_cols=225  Identities=9%  Similarity=0.010  Sum_probs=155.6

Q ss_pred             CceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCc-ccEEEEEEcccCCCCeEEEeecC---------CeE
Q 021291           19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAA-HGIVSVATGPSIGLNKVISQGRD---------GTV   88 (314)
Q Consensus        19 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~s~~~d---------g~v   88 (314)
                      ..+.+++|+|||+++++ +.||+|++||+.+++....+..+... ..|.+++|+|  ||++|++++.+         +.|
T Consensus        17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~Sp--Dg~~l~~~~~~~~~~~~~~~~~i   93 (723)
T 1xfd_A           17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISP--DREYALFSYNVEPIYQHSYTGYY   93 (723)
T ss_dssp             CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECT--TSSEEEEEESCCCCSSSCCCSEE
T ss_pred             ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECC--CCCEEEEEecCccceeecceeeE
Confidence            34788999999997776 78999999999999888777666420 1389999999  99999998764         788


Q ss_pred             EEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEee
Q 021291           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG  168 (314)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  168 (314)
                      .+||+.+++..     .+.........                                   -..++|+|+|+.++.  +
T Consensus        94 ~~~d~~~~~~~-----~l~~~~~~~~~-----------------------------------~~~~~~SPdG~~la~--~  131 (723)
T 1xfd_A           94 VLSKIPHGDPQ-----SLDPPEVSNAK-----------------------------------LQYAGWGPKGQQLIF--I  131 (723)
T ss_dssp             EEEESSSCCCE-----ECCCTTCCSCC-----------------------------------CSBCCBCSSTTCEEE--E
T ss_pred             EEEECCCCceE-----eccCCcccccc-----------------------------------ccccEECCCCCEEEE--E
Confidence            89999987641     11110000000                                   000569999987664  3


Q ss_pred             cCcCeEEEEecCCCceeeeecccccCCCCCcCCCC--------------CceeeeEEEecCCCCCCceEEEEeecCC---
Q 021291          169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKG--------------RGMCMAVQAYLPSKSQGFVNVLAGYEDG---  231 (314)
Q Consensus       169 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~--------------~~~~~~~~~~~p~~~~g~~~l~~g~~dg---  231 (314)
                      + ++.|++||+.+++......        .+....              .+...++. |+||   |+ .|++++.|+   
T Consensus       132 ~-~~~i~~~~~~~g~~~~~~~--------~~~~~~~~~g~~~~v~~ee~~~~~~~~~-~SpD---g~-~la~~~~~~~~~  197 (723)
T 1xfd_A          132 F-ENNIYYCAHVGKQAIRVVS--------TGKEGVIYNGLSDWLYEEEILKTHIAHW-WSPD---GT-RLAYAAINDSRV  197 (723)
T ss_dssp             E-TTEEEEESSSSSCCEEEEC--------CCBTTTEEEEECCHHHHHTTSSSSEEEE-ECTT---SS-EEEEEEEECTTS
T ss_pred             E-CCeEEEEECCCCceEEEec--------CCCCCceECcccceeEEEEeccCcceEE-ECCC---CC-EEEEEEECCCcc
Confidence            3 3789999999887655444        221111              11235676 9998   55 677766443   


Q ss_pred             -------------------------------cEEEEEccCCCCceEeeecC------CcceEEEEEeCCCCeEEEecC--
Q 021291          232 -------------------------------SILVWDIRNPGIPLTAMKVH------LEPVLCLSIDESCNGGISGGA--  272 (314)
Q Consensus       232 -------------------------------~i~vwd~~~~~~~~~~~~~h------~~~v~~~~~~~~~~~l~s~s~--  272 (314)
                                                     .|++||+.+ ++....+..+      ...+..++|+|||++|++.+.  
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~-~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~  276 (723)
T 1xfd_A          198 PIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNG-PTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRA  276 (723)
T ss_dssp             CEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSS-SCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETT
T ss_pred             ceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCC-CceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCC
Confidence                                           799999987 5554555544      668999999999998876643  


Q ss_pred             --CCcEEEEecCCCeeeEee------------eeeeecCCCceec
Q 021291          273 --DQKIVLYNLDHSTYVLFG------------IGFVCDQEGNKFG  303 (314)
Q Consensus       273 --dg~i~iw~~~~~~~~~~~------------~~~~~~~~~~~~~  303 (314)
                        +..|++||+.+++.....            ....++|+|..+.
T Consensus       277 ~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~  321 (723)
T 1xfd_A          277 QNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFF  321 (723)
T ss_dssp             SCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEE
T ss_pred             CCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEE
Confidence              357999999988754421            1456778887544

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.85  E-value=2e-18  Score=141.93  Aligned_cols=240  Identities=10%  Similarity=0.061  Sum_probs=161.2

Q ss_pred             CCceEEecCCCCceeEEEEccCCCEE-EEecCCCeEEEEeCCCCeEEEEEeccCCcc-------cEEEEEEcccCCCCeE
Q 021291            8 PDPVAVLRGHRASVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHSAAH-------GIVSVATGPSIGLNKV   79 (314)
Q Consensus         8 ~~~~~~l~~h~~~v~~~~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~~~l   79 (314)
                      ++.++.+.. ...+..++|+|+|+++ ++...++.|.+||..+++.+..+..+....       .+.+++|+|  +++++
T Consensus        79 ~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l  155 (353)
T 3vgz_A           79 LEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD--ATNTV  155 (353)
T ss_dssp             CCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET--TTTEE
T ss_pred             CeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECC--CCCEE
Confidence            445555553 3457889999999855 556668999999999999888887654211       278899999  88887


Q ss_pred             EEee--cCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCC---CCCC-
Q 021291           80 ISQG--RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSL---CDSK-  153 (314)
Q Consensus        80 ~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-  153 (314)
                      +.++  .++.|.+||..+++...  .+...........+++...... .....+....++....+.......   ++.. 
T Consensus       156 ~~~~~~~~~~i~~~d~~~~~~~~--~~~~~~~~~~~~~~s~dg~~l~-~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~  232 (353)
T 3vgz_A          156 YISGIGKESVIWVVDGGNIKLKT--AIQNTGKMSTGLALDSEGKRLY-TTNADGELITIDTADNKILSRKKLLDDGKEHF  232 (353)
T ss_dssp             EEEEESSSCEEEEEETTTTEEEE--EECCCCTTCCCCEEETTTTEEE-EECTTSEEEEEETTTTEEEEEEECCCSSSCCC
T ss_pred             EEEecCCCceEEEEcCCCCceEE--EecCCCCccceEEECCCCCEEE-EEcCCCeEEEEECCCCeEEEEEEcCCCCCCcc
Confidence            7765  47899999999876533  2221122222233333332222 222234555667666654433222   1222 


Q ss_pred             ---ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecC
Q 021291          154 ---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED  230 (314)
Q Consensus       154 ---~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~d  230 (314)
                         ++|+|+++.+++ +...++.|.+||+.+++.+..+..       +.       ...+. |+|+   |+.++++...+
T Consensus       233 ~~~~~~s~dg~~l~~-~~~~~~~v~~~d~~~~~~~~~~~~-------~~-------~~~~~-~s~d---g~~l~v~~~~~  293 (353)
T 3vgz_A          233 FINISLDTARQRAFI-TDSKAAEVLVVDTRNGNILAKVAA-------PE-------SLAVL-FNPA---RNEAYVTHRQA  293 (353)
T ss_dssp             EEEEEEETTTTEEEE-EESSSSEEEEEETTTCCEEEEEEC-------SS-------CCCEE-EETT---TTEEEEEETTT
T ss_pred             cceEEECCCCCEEEE-EeCCCCEEEEEECCCCcEEEEEEc-------CC-------CceEE-ECCC---CCEEEEEECCC
Confidence               799999987765 455579999999999998877762       11       13455 9998   55355566679


Q ss_pred             CcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCC
Q 021291          231 GSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQ  274 (314)
Q Consensus       231 g~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg  274 (314)
                      +.|.+||..+ ++.+..+.. ...+.+++|++++++|+.+..++
T Consensus       294 ~~v~~~d~~~-~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          294 GKVSVIDAKS-YKVVKTFDT-PTHPNSLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             TEEEEEETTT-TEEEEEEEC-CSEEEEEEECTTSCEEEEEEECC
T ss_pred             CeEEEEECCC-CeEEEEEec-CCCCCeEEEcCCCCEEEEEEccc
Confidence            9999999987 777777765 34779999999999776666654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.84  E-value=6.3e-19  Score=144.70  Aligned_cols=248  Identities=10%  Similarity=0.093  Sum_probs=158.6

Q ss_pred             EEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEE-EeecCCeEEEEeCCCCCCCCC
Q 021291           23 DVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCWDIENGGLSSN  101 (314)
Q Consensus        23 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~v~iwd~~~~~~~~~  101 (314)
                      .+++++++.++++++.++.|++||+.+++.+..+..+.. ..+..++|+|  +++.++ +...++.|.+||+.+++... 
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~--dg~~~~v~~~~~~~i~~~d~~t~~~~~-   79 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK-FGPGTAMMAP--DNRTAYVLNNHYGDIYGIDLDTCKNTF-   79 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSC-CSSCEEEECT--TSSEEEEEETTTTEEEEEETTTTEEEE-
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCC-CCCceeEECC--CCCEEEEEeCCCCcEEEEeCCCCcEEE-
Confidence            456788888999999999999999999998888875531 1367999999  888655 55678999999999876432 


Q ss_pred             Ceeeeecc------eeeEEEeeeeeccccccccC-----------CCCcceeeccCCceee--ecCCCCCC---ceeccC
Q 021291          102 PSLTIKTN------SYHFCKLSLVKEPYANAKQA-----------NEPKDCYEREVGETVD--TDSLCDSK---DDVPAE  159 (314)
Q Consensus       102 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~  159 (314)
                       .+.....      ......+++.+.........           .....++++.......  .....+..   ++|+|+
T Consensus        80 -~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~d  158 (349)
T 1jmx_B           80 -HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADD  158 (349)
T ss_dssp             -EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTT
T ss_pred             -EEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCC
Confidence             1121110      01223333333222222211           2455566665532111  11111112   779999


Q ss_pred             CCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCc-----------CCC--------------------------
Q 021291          160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNF-----------SSK--------------------------  202 (314)
Q Consensus       160 ~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h-----------~~~--------------------------  202 (314)
                      |+ +++  ++  +.|.+||+.+++....+........ .+           ...                          
T Consensus       159 g~-l~~--~~--~~i~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  232 (349)
T 1jmx_B          159 GS-LYV--AG--PDIYKMDVKTGKYTVALPLRNWNRK-GYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLL  232 (349)
T ss_dssp             SC-EEE--ES--SSEEEECTTTCCEEEEECSTTCCCT-TBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEE
T ss_pred             Cc-EEE--cc--CcEEEEeCCCCceeccccccccCCc-cccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccc
Confidence            98 554  33  3499999999887776652110000 00           000                          


Q ss_pred             --------------------CCceeeeEEEecC-CCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEe
Q 021291          203 --------------------GRGMCMAVQAYLP-SKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSID  261 (314)
Q Consensus       203 --------------------~~~~~~~~~~~~p-~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~  261 (314)
                                          .......+. |+| +   |+ +++++  ++.|.+||+.+ ++.+..+.. ...+.+++|+
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~sp~d---g~-~l~~~--~~~v~~~d~~~-~~~~~~~~~-~~~~~~~~~s  303 (349)
T 1jmx_B          233 YGYLSVDLKTGKTHTQEFADLTELYFTGL-RSPKD---PN-QIYGV--LNRLAKYDLKQ-RKLIKAANL-DHTYYCVAFD  303 (349)
T ss_dssp             EEEEEEETTTCCEEEEEEEECSSCEEEEE-ECSSC---TT-EEEEE--ESEEEEEETTT-TEEEEEEEC-SSCCCEEEEC
T ss_pred             eeEEEEeccCCcEEecccccCCCcceeeE-ecCCC---CC-EEEEE--cCeEEEEECcc-CeEEEEEcC-CCCccceEEC
Confidence                                001223444 667 6   55 66666  78999999998 777766663 3457899999


Q ss_pred             CCCCeEEEecCCCcEEEEecCCCeeeEee
Q 021291          262 ESCNGGISGGADQKIVLYNLDHSTYVLFG  290 (314)
Q Consensus       262 ~~~~~l~s~s~dg~i~iw~~~~~~~~~~~  290 (314)
                      +++++|++++.++.|++||+++++.+..+
T Consensus       304 ~dg~~l~~~~~~~~v~v~d~~~~~~~~~~  332 (349)
T 1jmx_B          304 KKGDKLYLGGTFNDLAVFNPDTLEKVKNI  332 (349)
T ss_dssp             SSSSCEEEESBSSEEEEEETTTTEEEEEE
T ss_pred             CCCCEEEEecCCCeEEEEeccccceeeee
Confidence            99998988888999999999999877654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.84  E-value=2.1e-19  Score=151.72  Aligned_cols=163  Identities=9%  Similarity=0.039  Sum_probs=115.4

Q ss_pred             CCCCceeEEEEccCCCEEE----EecCCCeEEEEeCCCC--------e---EEEEEeccCCcccEEEEEEcccCC-CCeE
Q 021291           16 GHRASVTDVCFHQTKPILF----AGTTGGELRIWDTVQH--------R---TVSSSWVHSAAHGIVSVATGPSIG-LNKV   79 (314)
Q Consensus        16 ~h~~~v~~~~~~~~~~~l~----s~~~dg~v~iwd~~~~--------~---~~~~~~~~~~~~~v~~~~~~~~~~-~~~l   79 (314)
                      .|...|.+++|+|+|++|+    +|+.|+.|+|||+.++        +   .+..+.+|.  ..|.+++|+|  + +++|
T Consensus        90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~--~~V~~v~~~p--~~~~~l  165 (434)
T 2oit_A           90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAG--GMVIDMKWNP--TVPSMV  165 (434)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGG--GSEEEEEECS--SCTTEE
T ss_pred             cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCC--CceEEEEECC--CCCCEE
Confidence            3677899999999999999    8999999999998654        2   244455677  4599999999  6 7899


Q ss_pred             EEeecCCeEEEEeCCCCCCCCCCeeeeecce-eeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceecc
Q 021291           80 ISQGRDGTVKCWDIENGGLSSNPSLTIKTNS-YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPA  158 (314)
Q Consensus        80 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (314)
                      ++++.||+|++||++++..    ......+. ...+                                       ++|+|
T Consensus       166 as~s~Dg~v~iwD~~~~~~----~~~~~~~~~~v~~---------------------------------------v~wsp  202 (434)
T 2oit_A          166 AVCLADGSIAVLQVTETVK----VCATLPSTVAVTS---------------------------------------VCWSP  202 (434)
T ss_dssp             EEEETTSCEEEEEESSSEE----EEEEECGGGCEEE---------------------------------------EEECT
T ss_pred             EEEECCCeEEEEEcCCCcc----eeeccCCCCceeE---------------------------------------EEEcC
Confidence            9999999999999987632    11111111 1111                                       67999


Q ss_pred             CCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCC---CCCceeeeEEEecCCCCCCceEEEEeecCC----
Q 021291          159 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSS---KGRGMCMAVQAYLPSKSQGFVNVLAGYEDG----  231 (314)
Q Consensus       159 ~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~---~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg----  231 (314)
                      +|+.++  +|+.||.|++||++ ++....+.        .|..   .....+.++. |+++   +.++++....+|    
T Consensus       203 dg~~la--sgs~dg~v~iwd~~-~~~~~~~~--------~~~~~~~~~~~~v~~v~-w~~~---~~~l~~~~~~dg~~~~  267 (434)
T 2oit_A          203 KGKQLA--VGKQNGTVVQYLPT-LQEKKVIP--------CPPFYESDHPVRVLDVL-WIGT---YVFAIVYAAADGTLET  267 (434)
T ss_dssp             TSSCEE--EEETTSCEEEECTT-CCEEEEEC--------CCTTCCTTSCEEEEEEE-EEET---TEEEEEEEETTCCSSS
T ss_pred             CCCEEE--EEcCCCcEEEEccC-Cccccccc--------CCcccCCCCceeEEEEE-EecC---ceEEEEEccCCCccCC
Confidence            987655  56679999999998 55555554        2221   1234788887 9986   442333344443    


Q ss_pred             --cEEEEEccC
Q 021291          232 --SILVWDIRN  240 (314)
Q Consensus       232 --~i~vwd~~~  240 (314)
                        .+++|+++.
T Consensus       268 ~~~v~i~~l~~  278 (434)
T 2oit_A          268 SPDVVMALLPK  278 (434)
T ss_dssp             CCEEEEEECCC
T ss_pred             CCceEEEEecc
Confidence              389999986

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.84  E-value=1.7e-18  Score=142.22  Aligned_cols=237  Identities=13%  Similarity=0.114  Sum_probs=146.5

Q ss_pred             cCCCCceeEEEEccCCCEEEEecC---CCeEEEEeCCCCe--EEEEEeccCCcccEEEEEEcccCCCCeEEEee-cCCeE
Q 021291           15 RGHRASVTDVCFHQTKPILFAGTT---GGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQG-RDGTV   88 (314)
Q Consensus        15 ~~h~~~v~~~~~~~~~~~l~s~~~---dg~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~v   88 (314)
                      ..+...+..++|+|||+ |++++.   ++.|.+|++.+++  .+..+..+.  ..+..++|+|  ++++|++++ .++.|
T Consensus        36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~--~~p~~~a~sp--dg~~l~~~~~~~~~v  110 (347)
T 3hfq_A           36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPG--TPPAYVAVDE--ARQLVYSANYHKGTA  110 (347)
T ss_dssp             EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEES--CCCSEEEEET--TTTEEEEEETTTTEE
T ss_pred             eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCC--CCCEEEEECC--CCCEEEEEeCCCCEE
Confidence            34556788899999998 555443   6899999997765  344444454  3488999999  999888887 68999


Q ss_pred             EEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC-ceeccCCCceEEEe
Q 021291           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-DDVPAEGPKYMAVA  167 (314)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  167 (314)
                      .+||+....... ..........         .+.     .         +       ....+.. ++|+|+|+ +++ +
T Consensus       111 ~v~~~~~~g~~~-~~~~~~~~~~---------~p~-----~---------~-------~~~~~~~~~~~spdg~-l~v-~  157 (347)
T 3hfq_A          111 EVMKIAADGALT-LTDTVQHSGH---------GPR-----P---------E-------QDGSHIHYTDLTPDNR-LAV-I  157 (347)
T ss_dssp             EEEEECTTSCEE-EEEEEECCCC---------CSS-----T---------T-------CSSCCEEEEEECTTSC-EEE-E
T ss_pred             EEEEeCCCCCee-ecceeecCCC---------CCC-----c---------c-------ccCCCceEEEECCCCc-EEE-E
Confidence            999996422111 0101100000         000     0         0       0000000 67999998 554 5


Q ss_pred             ecCcCeEEEEecC-CCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCC-CCc-
Q 021291          168 GEQLSEVEIWDLN-TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP-GIP-  244 (314)
Q Consensus       168 g~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~-~~~-  244 (314)
                      +..++.|.+||+. +++........      .+   .......+. |+|+   |+.+++++..++.|.+|+++.. ++. 
T Consensus       158 ~~~~~~v~~~~~~~~g~~~~~~~~~------~~---~g~~p~~~~-~spd---g~~l~v~~~~~~~v~v~~~~~~~g~~~  224 (347)
T 3hfq_A          158 DLGSDKVYVYNVSDAGQLSEQSVLT------ME---AGFGPRHLV-FSPD---GQYAFLAGELSSQIASLKYDTQTGAFT  224 (347)
T ss_dssp             ETTTTEEEEEEECTTSCEEEEEEEE------CC---TTCCEEEEE-ECTT---SSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred             eCCCCEEEEEEECCCCcEEEeeeEE------cC---CCCCCceEE-ECCC---CCEEEEEeCCCCEEEEEEecCCCCceE
Confidence            6667899999998 45432211100      11   122345676 9998   6645556677899999998741 322 


Q ss_pred             -eEeeecCC------cceEEEEEeCCCCeE-EEecCCCcEEEEecCCC---eeeEe-------eeeeeecCCCcee
Q 021291          245 -LTAMKVHL------EPVLCLSIDESCNGG-ISGGADQKIVLYNLDHS---TYVLF-------GIGFVCDQEGNKF  302 (314)
Q Consensus       245 -~~~~~~h~------~~v~~~~~~~~~~~l-~s~s~dg~i~iw~~~~~---~~~~~-------~~~~~~~~~~~~~  302 (314)
                       +..+....      ..+..++|+|+|++| ++...++.|.+|+++..   +.+..       ..+++++|+|..+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l  300 (347)
T 3hfq_A          225 QLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFV  300 (347)
T ss_dssp             EEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEE
T ss_pred             EeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEE
Confidence             22333222      358899999999977 56667899999999732   22222       2356778888744

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.84  E-value=1.6e-18  Score=141.84  Aligned_cols=250  Identities=10%  Similarity=0.103  Sum_probs=149.8

Q ss_pred             EEEEecCCCeEEEEeCC-CC--eEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC-CeEEEEeCC--CCCCCCCCeee
Q 021291           32 ILFAGTTGGELRIWDTV-QH--RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD-GTVKCWDIE--NGGLSSNPSLT  105 (314)
Q Consensus        32 ~l~s~~~dg~v~iwd~~-~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g~v~iwd~~--~~~~~~~~~~~  105 (314)
                      ++++++.|+.|++||+. ++  +.+..+ .+.  ..+.+++|+|  ++++|++++.+ +.|.+|++.  +++...  ...
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~sp--dg~~l~~~~~~~~~v~~~~~~~~~~~~~~--~~~   79 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVV-DVP--GQVQPMVVSP--DKRYLYVGVRPEFRVLAYRIAPDDGALTF--AAE   79 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECS--SCCCCEEECT--TSSEEEEEETTTTEEEEEEECTTTCCEEE--EEE
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeE-ecC--CCCceEEECC--CCCEEEEeecCCCeEEEEEecCCCCceee--ccc
Confidence            44555889999999985 33  333333 344  3488999999  99988888876 999999998  444221  112


Q ss_pred             eecc-eeeEEEeeeeeccccccccCCCCcceeeccCCc--eeeecCCCCCC---ceeccCCCceEEEeecCcCeEEEEec
Q 021291          106 IKTN-SYHFCKLSLVKEPYANAKQANEPKDCYEREVGE--TVDTDSLCDSK---DDVPAEGPKYMAVAGEQLSEVEIWDL  179 (314)
Q Consensus       106 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~g~~d~~i~vwd~  179 (314)
                      +... ......+++............+...+|++..+.  ........+..   ++|+|+++.+++ ++..++.|.+||+
T Consensus        80 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~-~~~~~~~v~~~d~  158 (343)
T 1ri6_A           80 SALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWV-PALKQDRICLFTV  158 (343)
T ss_dssp             EECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEE-EEGGGTEEEEEEE
T ss_pred             cccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEE-ecCCCCEEEEEEe
Confidence            2211 223333443333222333334556677774221  12222222222   899999987765 4445799999999


Q ss_pred             CC-Cceeeee--cccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCC-CCc--eEeee----
Q 021291          180 NT-AERCTRL--HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP-GIP--LTAMK----  249 (314)
Q Consensus       180 ~~-~~~~~~~--~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~-~~~--~~~~~----  249 (314)
                      .+ ++.....  ...      .+   ....+..+. |+|+   |+.+++++..++.|.+||++.. +..  ...+.    
T Consensus       159 ~~~~~~~~~~~~~~~------~~---~~~~~~~~~-~~pd---g~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~  225 (343)
T 1ri6_A          159 SDDGHLVAQDPAEVT------TV---EGAGPRHMV-FHPN---EQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPE  225 (343)
T ss_dssp             CTTSCEEEEEEEEEE------CS---TTCCEEEEE-ECTT---SSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCT
T ss_pred             cCCCceeeecccccc------cC---CCCCcceEE-ECCC---CCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCc
Confidence            87 5443211  100      11   122455676 9998   5534456668899999999631 222  22222    


Q ss_pred             cC--CcceEEEEEeCCCCeEE-EecCCCcEEEEecCC--C--eeeEe------eeeeeecCCCcee
Q 021291          250 VH--LEPVLCLSIDESCNGGI-SGGADQKIVLYNLDH--S--TYVLF------GIGFVCDQEGNKF  302 (314)
Q Consensus       250 ~h--~~~v~~~~~~~~~~~l~-s~s~dg~i~iw~~~~--~--~~~~~------~~~~~~~~~~~~~  302 (314)
                      ++  ...+..++|+|++++|+ ++..++.|.+|+++.  +  +.+..      ...++++++|..+
T Consensus       226 ~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l  291 (343)
T 1ri6_A          226 NFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYL  291 (343)
T ss_dssp             TCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEE
T ss_pred             cccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEE
Confidence            11  23567899999998776 566899999999983  2  22222      2345677777643

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.84  E-value=2.3e-17  Score=136.22  Aligned_cols=250  Identities=8%  Similarity=0.009  Sum_probs=152.1

Q ss_pred             CCCceeEEEEccCCCEEEEecCC----CeEEEEeCCC--CeE--EEEEeccCCcccEEEEEEcccCCCCeEEEee-cCCe
Q 021291           17 HRASVTDVCFHQTKPILFAGTTG----GELRIWDTVQ--HRT--VSSSWVHSAAHGIVSVATGPSIGLNKVISQG-RDGT   87 (314)
Q Consensus        17 h~~~v~~~~~~~~~~~l~s~~~d----g~v~iwd~~~--~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~   87 (314)
                      |...+..++|+|||++|++++.+    +.|.+|+++.  ++.  +.....+.  .....+++    ++++|++++ .++.
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~--~~p~~~~~----dg~~l~~~~~~~~~  121 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMG--ADPCYLTT----NGKNIVTANYSGGS  121 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSS--SCEEEEEE----CSSEEEEEETTTTE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCC--CCcEEEEE----CCCEEEEEECCCCE
Confidence            66778889999999999998876    7999998865  443  33333233  33667777    346666555 6889


Q ss_pred             EEEEeCCCCCCCCCCeeeee--c----------ceeeEEEeeeeeccccccccCCCCcceeeccCCce------------
Q 021291           88 VKCWDIENGGLSSNPSLTIK--T----------NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGET------------  143 (314)
Q Consensus        88 v~iwd~~~~~~~~~~~~~~~--~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  143 (314)
                      |.+|++..............  .          ...+...+++.+..............+|++.....            
T Consensus       122 v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~  201 (361)
T 3scy_A          122 ITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGT  201 (361)
T ss_dssp             EEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEE
T ss_pred             EEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccc
Confidence            99999976543321111111  0          01133444444433333333344556666654321            


Q ss_pred             -eeecCCCCCC---ceeccCCCceEEEeecCcCeEEEEecCCCce--eeeecccccCCCCCcCCCCCceeeeEEEecCCC
Q 021291          144 -VDTDSLCDSK---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSK  217 (314)
Q Consensus       144 -~~~~~~~~~~---~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~  217 (314)
                       ..........   ++|+|+|+.+++ ++..++.|.+||+.+++.  +..+.        .... .......+. |+|+ 
T Consensus       202 ~~~~~~~~~~~~~~~~~spdg~~l~v-~~~~~~~v~v~~~~~g~~~~~~~~~--------~~~~-~~~~~~~i~-~spd-  269 (361)
T 3scy_A          202 PEAFKVAPGSGPRHLIFNSDGKFAYL-INEIGGTVIAFRYADGMLDEIQTVA--------ADTV-NAQGSGDIH-LSPD-  269 (361)
T ss_dssp             EEEEECCTTCCEEEEEECTTSSEEEE-EETTTCEEEEEEEETTEEEEEEEEE--------SCSS-CCCCEEEEE-ECTT-
T ss_pred             ccceecCCCCCCeEEEEcCCCCEEEE-EcCCCCeEEEEEecCCceEEeEEEe--------cCCC-CCCCcccEE-ECCC-
Confidence             1112222222   899999987665 455579999999987654  22222        1111 112346776 9998 


Q ss_pred             CCCceEEEEee-c-CCcEEEEEccC-CCC--ceEeeecCCcceEEEEEeCCCCeEEEec-CCCcEEEEecC--CCeeeE
Q 021291          218 SQGFVNVLAGY-E-DGSILVWDIRN-PGI--PLTAMKVHLEPVLCLSIDESCNGGISGG-ADQKIVLYNLD--HSTYVL  288 (314)
Q Consensus       218 ~~g~~~l~~g~-~-dg~i~vwd~~~-~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~s-~dg~i~iw~~~--~~~~~~  288 (314)
                        |+ +|+++. . ++.|.+|+++. .+.  .+..+.. ...+..++|+|+|++|++++ .++.|.+|+++  +++...
T Consensus       270 --g~-~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~  344 (361)
T 3scy_A          270 --GK-YLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTD  344 (361)
T ss_dssp             --SS-EEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             --CC-EEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEee
Confidence              66 565544 4 58999999962 133  3444444 55788999999999887776 67899997554  555443

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.83  E-value=1.2e-18  Score=156.58  Aligned_cols=264  Identities=11%  Similarity=-0.036  Sum_probs=165.4

Q ss_pred             CceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCC---
Q 021291           19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN---   95 (314)
Q Consensus        19 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~---   95 (314)
                      ..|.+++|+|| +.++.+ .|+.|++||+.+++..... .+.  ..+.+++|+|  ||+.|+++ .|+.|++||+.+   
T Consensus        82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~~l~-~~~--~~~~~~~~Sp--dG~~la~~-~~~~i~v~~~~~~~~  153 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVTYLF-DTN--EETASLDFSP--VGDRVAYV-RNHNLYIARGGKLGE  153 (706)
T ss_dssp             CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEEEEE-CCT--TCCTTCEECT--TSSEEEEE-ETTEEEEEECBCTTS
T ss_pred             cCceeEEECCC-CeEEEE-ECCEEEEEECCCCceEEcc-CCc--ccccCCcCCC--CCCEEEEE-ECCeEEEEecCcccc
Confidence            57999999999 555554 4599999999988765443 344  3488999999  99999985 689999999988   


Q ss_pred             --CCCCCCCeeeeecce--------------eeEEEeeeeecccccccc-------------------------------
Q 021291           96 --GGLSSNPSLTIKTNS--------------YHFCKLSLVKEPYANAKQ-------------------------------  128 (314)
Q Consensus        96 --~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~-------------------------------  128 (314)
                        ++...  +.......              .....+++.+........                               
T Consensus       154 ~~g~~~~--~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~  231 (706)
T 2z3z_A          154 GMSRAIA--VTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTP  231 (706)
T ss_dssp             CCCCCEE--SCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSC
T ss_pred             cCCCcEE--eccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCC
Confidence              65422  11111110              123334444333222211                               


Q ss_pred             -CCCCcceeeccCCceeeecCC-CCCC----ceeccCCCceEEEeecC---cCeEEEEecCCCceeeeecccccCCCCCc
Q 021291          129 -ANEPKDCYEREVGETVDTDSL-CDSK----DDVPAEGPKYMAVAGEQ---LSEVEIWDLNTAERCTRLHQNSCGGSPNF  199 (314)
Q Consensus       129 -~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~g~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~h  199 (314)
                       ......+|++..+........ .+..    ++|+|+|+.+++.+...   +..|++||+.+++....+...      .+
T Consensus       232 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~------~~  305 (706)
T 2z3z_A          232 SHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVE------TD  305 (706)
T ss_dssp             CCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEE------EC
T ss_pred             CCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEc------cC
Confidence             112344555555543322221 2333    89999998776533221   138999999998443333210      11


Q ss_pred             CCCCCceeeeEEEecC--CCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEE-EEEeCCCCeEEEe-cCCC-
Q 021291          200 SSKGRGMCMAVQAYLP--SKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLC-LSIDESCNGGISG-GADQ-  274 (314)
Q Consensus       200 ~~~~~~~~~~~~~~~p--~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~l~s~-s~dg-  274 (314)
                      .. ....+..+. |+|  +   |+ +++++..|+.++||+++..+..+..+..|...+.. ++|+|+++.|+.+ +.++ 
T Consensus       306 ~~-~~~~~~~~~-~sp~~d---g~-~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~  379 (706)
T 2z3z_A          306 KH-YVEPLHPLT-FLPGSN---NQ-FIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASP  379 (706)
T ss_dssp             SS-CCCCCSCCE-ECTTCS---SE-EEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCT
T ss_pred             CC-eECccCCce-eecCCC---CE-EEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCC
Confidence            11 111234455 999  7   65 88899999999999987436777888888888887 7999999877554 4444 


Q ss_pred             ---cEEEEecCCCeeeEe-----eeeeeecCCCceece
Q 021291          275 ---KIVLYNLDHSTYVLF-----GIGFVCDQEGNKFGT  304 (314)
Q Consensus       275 ---~i~iw~~~~~~~~~~-----~~~~~~~~~~~~~~~  304 (314)
                         .|..||+++++....     ....+++|+|..++.
T Consensus       380 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~  417 (706)
T 2z3z_A          380 LERHFYCIDIKGGKTKDLTPESGMHRTQLSPDGSAIID  417 (706)
T ss_dssp             TCBEEEEEETTCCCCEESCCSSSEEEEEECTTSSEEEE
T ss_pred             ceEEEEEEEcCCCCceeccCCCceEEEEECCCCCEEEE
Confidence               677777776642221     234567788876654

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.83  E-value=1.4e-18  Score=156.37  Aligned_cols=279  Identities=9%  Similarity=-0.060  Sum_probs=165.4

Q ss_pred             CCceEEecCCCC---ceeEEEEccCCCEEEEecCC---------CeEEEEeCCCCeEEEEEeccC-CcccEEEEEEcccC
Q 021291            8 PDPVAVLRGHRA---SVTDVCFHQTKPILFAGTTG---------GELRIWDTVQHRTVSSSWVHS-AAHGIVSVATGPSI   74 (314)
Q Consensus         8 ~~~~~~l~~h~~---~v~~~~~~~~~~~l~s~~~d---------g~v~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~   74 (314)
                      ++....+.+|..   .|.+++|||||++|++++.+         +.|.+||+.+++. ..+.... +...+..++|+|  
T Consensus        47 g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SP--  123 (723)
T 1xfd_A           47 NTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGP--  123 (723)
T ss_dssp             CCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCS--
T ss_pred             CcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECC--
Confidence            455667777765   49999999999999998764         7889999998876 3333222 113388999999  


Q ss_pred             CCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeeccee------------------eEEEeeeeeccccccccCC------
Q 021291           75 GLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSY------------------HFCKLSLVKEPYANAKQAN------  130 (314)
Q Consensus        75 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~------  130 (314)
                      ||+.|+.++. +.|++||+.+++...  +........                  ....+++.+..........      
T Consensus       124 dG~~la~~~~-~~i~~~~~~~g~~~~--~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~  200 (723)
T 1xfd_A          124 KGQQLIFIFE-NNIYYCAHVGKQAIR--VVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIM  200 (723)
T ss_dssp             STTCEEEEET-TEEEEESSSSSCCEE--EECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEE
T ss_pred             CCCEEEEEEC-CeEEEEECCCCceEE--EecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceE
Confidence            9999999886 799999999876432  111111111                  2344444443332222111      


Q ss_pred             ---------------------------CCcceeeccCCceeeecCCCC------CC----ceeccCCCceEEEee--cCc
Q 021291          131 ---------------------------EPKDCYEREVGETVDTDSLCD------SK----DDVPAEGPKYMAVAG--EQL  171 (314)
Q Consensus       131 ---------------------------~~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~g--~~d  171 (314)
                                                 ....+|++....... .+..+      ..    ++|+|||+.++..+.  ..+
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~-~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~  279 (723)
T 1xfd_A          201 ELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDL-EMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNV  279 (723)
T ss_dssp             EECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCE-ECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCE
T ss_pred             EeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeE-EeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCe
Confidence                                       123344544443211 22222      22    899999985543322  234


Q ss_pred             CeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEE-eecCC------cEEEEEccCCCC-
Q 021291          172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA-GYEDG------SILVWDIRNPGI-  243 (314)
Q Consensus       172 ~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~-g~~dg------~i~vwd~~~~~~-  243 (314)
                      ..|++||+.+++....+..       .+..........+. |+|+   |+.+++. +..++      .|++||....+. 
T Consensus       280 ~~i~~~d~~~g~~~~~~~~-------~~~~~~~~~~~~~~-~spd---g~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~  348 (723)
T 1xfd_A          280 SILTLCDATTGVCTKKHED-------ESEAWLHRQNEEPV-FSKD---GRKFFFIRAIPQGGRGKFYHITVSSSQPNSSN  348 (723)
T ss_dssp             EEEEEEETTTCCEEEEEEE-------ECSSCCCCCCCCCE-ECTT---SCSEEEEEEECCSSSSCEEEEEEECSSCCSSS
T ss_pred             EEEEEEeCCCCcceEEEEe-------ccCCEEeccCCCce-EcCC---CCeEEEEEecccCCCcceeEEEEEeccCCCCc
Confidence            6899999999887665542       12111110012455 9998   5424443 56677      577777323233 


Q ss_pred             -ceEeeecCCcceEE-EEEeCCCCeEEEecCC---CcEEEEecCCCe--eeEe----------eeeeeecCCCceece
Q 021291          244 -PLTAMKVHLEPVLC-LSIDESCNGGISGGAD---QKIVLYNLDHST--YVLF----------GIGFVCDQEGNKFGT  304 (314)
Q Consensus       244 -~~~~~~~h~~~v~~-~~~~~~~~~l~s~s~d---g~i~iw~~~~~~--~~~~----------~~~~~~~~~~~~~~~  304 (314)
                       +...+..+...+.. ++|+|+|+.|+..+.+   +.+++|+++...  ....          ...++++|+|..++.
T Consensus       349 ~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~  426 (723)
T 1xfd_A          349 DNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLL  426 (723)
T ss_dssp             CCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEE
T ss_pred             cceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEE
Confidence             14455544444554 6999999998765554   789999986432  1111          234667888876654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.82  E-value=6.6e-18  Score=135.08  Aligned_cols=205  Identities=8%  Similarity=0.035  Sum_probs=136.9

Q ss_pred             EecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCC-CCCCCCCeeeeecceeeE
Q 021291           35 AGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN-GGLSSNPSLTIKTNSYHF  113 (314)
Q Consensus        35 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~  113 (314)
                      +++.|+.|++||+.+++... +..|.  ..|.+++|+|  ++++|++++ ++.|++||+.+ ++...    ........ 
T Consensus        17 ~~~~~~~i~~~d~~~~~~~~-~~~~~--~~v~~~~~sp--dg~~l~~~~-~~~i~~~d~~~~~~~~~----~~~~~~~~-   85 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMRV-VWQTP--ELFEAPNWSP--DGKYLLLNS-EGLLYRLSLAGDPSPEK----VDTGFATI-   85 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEEE-EEEES--SCCEEEEECT--TSSEEEEEE-TTEEEEEESSSCCSCEE----CCCTTCCC-
T ss_pred             CCCcceeEEEEeCCCCceee-eccCC--cceEeeEECC--CCCEEEEEc-CCeEEEEeCCCCCCceE----eccccccc-
Confidence            45789999999999887664 44566  4499999999  999999877 78999999988 65321    11110000 


Q ss_pred             EEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcC--eEEEEecCCCceeeeeccc
Q 021291          114 CKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS--EVEIWDLNTAERCTRLHQN  191 (314)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~--~i~vwd~~~~~~~~~~~~~  191 (314)
                      .                                    -..++|+|+++.+++.....++  .|..|+..++. ...+.  
T Consensus        86 ~------------------------------------~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~--  126 (297)
T 2ojh_A           86 C------------------------------------NNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMT--  126 (297)
T ss_dssp             B------------------------------------CSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECC--
T ss_pred             c------------------------------------ccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEee--
Confidence            0                                    0006799999876654322333  45555555544 33333  


Q ss_pred             ccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEec
Q 021291          192 SCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG  271 (314)
Q Consensus       192 ~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s  271 (314)
                            .+     ..+..+. |+|+   ++.+++++..++.+++|+++........+..|...+.+++|+|++++|+.++
T Consensus       127 ------~~-----~~~~~~~-~spd---g~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  191 (297)
T 2ojh_A          127 ------KN-----LPSYWHG-WSPD---GKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNS  191 (297)
T ss_dssp             ------SS-----SSEEEEE-ECTT---SSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEE
T ss_pred             ------cC-----CCccceE-ECCC---CCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEe
Confidence                  11     1356666 9998   5534558889999999997643455667778888999999999999877665


Q ss_pred             -CCCcEEEEecC-CCeeeEe-------eeeeeecCCCceece
Q 021291          272 -ADQKIVLYNLD-HSTYVLF-------GIGFVCDQEGNKFGT  304 (314)
Q Consensus       272 -~dg~i~iw~~~-~~~~~~~-------~~~~~~~~~~~~~~~  304 (314)
                       .|+.+++|+++ .+..+..       .....++|+|..+..
T Consensus       192 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~  233 (297)
T 2ojh_A          192 SRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVF  233 (297)
T ss_dssp             CTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEE
T ss_pred             cCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEE
Confidence             58999999886 3333332       233567788876543

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.81  E-value=2.2e-18  Score=154.80  Aligned_cols=250  Identities=12%  Similarity=0.010  Sum_probs=159.1

Q ss_pred             ceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCC-----CeEEEEEeccCCc------------ccEEEEEEcc
Q 021291           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ-----HRTVSSSWVHSAA------------HGIVSVATGP   72 (314)
Q Consensus        10 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~-----~~~~~~~~~~~~~------------~~v~~~~~~~   72 (314)
                      ....+..|...+.+++|+|||++|+++ .|+.|++||+.+     ++.......+...            ..+.+++|+|
T Consensus       112 ~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp  190 (706)
T 2z3z_A          112 KVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP  190 (706)
T ss_dssp             EEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT
T ss_pred             ceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC
Confidence            344556677889999999999999985 789999999998     7766544333321            0147899999


Q ss_pred             cCCCCeEEEee---------------------------------cCCeEEEEeCCCCCCCCCCeee--eecceeeEEEee
Q 021291           73 SIGLNKVISQG---------------------------------RDGTVKCWDIENGGLSSNPSLT--IKTNSYHFCKLS  117 (314)
Q Consensus        73 ~~~~~~l~s~~---------------------------------~dg~v~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~  117 (314)
                        |+++|++++                                 .+..|.+||+.+++...  +..  .+........++
T Consensus       191 --Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~--~~~~~~~~~~~~~~~~s  266 (706)
T 2z3z_A          191 --KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVY--LQTGEPKEKFLTNLSWS  266 (706)
T ss_dssp             --TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEE--CCCCSCTTCEEEEEEEC
T ss_pred             --CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEe--eccCCCCceeEeeEEEE
Confidence              999999887                                 44689999999876422  111  111223344444


Q ss_pred             eeeccccccccCC----CCcceeeccCCceeeecC----CCC----CCceecc--CCCceEEEeecCcCeEEEEecC-CC
Q 021291          118 LVKEPYANAKQAN----EPKDCYEREVGETVDTDS----LCD----SKDDVPA--EGPKYMAVAGEQLSEVEIWDLN-TA  182 (314)
Q Consensus       118 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~----~~~----~~~~~~~--~~~~~~~~~g~~d~~i~vwd~~-~~  182 (314)
                      +.+..........    .....++...+.......    ...    ..++|+|  +|+ +++ +++.|+.++||++. ++
T Consensus       267 pdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~-~l~-~~~~~g~~~l~~~~~~~  344 (706)
T 2z3z_A          267 PDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQ-FIW-QSRRDGWNHLYLYDTTG  344 (706)
T ss_dssp             TTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSE-EEE-EECTTSSCEEEEEETTS
T ss_pred             CCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCE-EEE-EEccCCccEEEEEECCC
Confidence            4443322222211    234455665552211111    111    2279999  887 343 56668889999876 55


Q ss_pred             ceeeeecccccCCCCCcCCCCCceeee-EEEecCCCCCCceEEEEeecCC----cEEEEEccCCCCceEeeecCCcceEE
Q 021291          183 ERCTRLHQNSCGGSPNFSSKGRGMCMA-VQAYLPSKSQGFVNVLAGYEDG----SILVWDIRNPGIPLTAMKVHLEPVLC  257 (314)
Q Consensus       183 ~~~~~~~~~~~~~~~~h~~~~~~~~~~-~~~~~p~~~~g~~~l~~g~~dg----~i~vwd~~~~~~~~~~~~~h~~~v~~  257 (314)
                      ..+..+.        .+    ...+.. +. |+|+   |+.+++++..++    .|+.||+.+ +. ...+. |...+.+
T Consensus       345 ~~~~~l~--------~~----~~~v~~~~~-~spd---g~~l~~~~~~~~~~~~~l~~~d~~~-~~-~~~l~-~~~~~~~  405 (706)
T 2z3z_A          345 RLIRQVT--------KG----EWEVTNFAG-FDPK---GTRLYFESTEASPLERHFYCIDIKG-GK-TKDLT-PESGMHR  405 (706)
T ss_dssp             CEEEECC--------CS----SSCEEEEEE-ECTT---SSEEEEEESSSCTTCBEEEEEETTC-CC-CEESC-CSSSEEE
T ss_pred             CEEEecC--------CC----CeEEEeeeE-EcCC---CCEEEEEecCCCCceEEEEEEEcCC-CC-ceecc-CCCceEE
Confidence            6666665        33    223444 55 9998   553555565555    667777765 43 34444 6778999


Q ss_pred             EEEeCCCCeEEEecCC----CcEEEEecCCCe
Q 021291          258 LSIDESCNGGISGGAD----QKIVLYNLDHST  285 (314)
Q Consensus       258 ~~~~~~~~~l~s~s~d----g~i~iw~~~~~~  285 (314)
                      ++|+|+|++|+..+.+    +.|++||+++++
T Consensus       406 ~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          406 TQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             EEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             EEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence            9999999988766443    569999998876

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.81  E-value=4.2e-17  Score=134.49  Aligned_cols=274  Identities=9%  Similarity=-0.030  Sum_probs=164.2

Q ss_pred             CCCceEEecCCCCceeEEEEccCCCEEEEec----------CCCeEEEEeCCCCeEEEEEeccCC----cccEEEEEEcc
Q 021291            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGT----------TGGELRIWDTVQHRTVSSSWVHSA----AHGIVSVATGP   72 (314)
Q Consensus         7 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~~~----~~~v~~~~~~~   72 (314)
                      .++.+..+..+..+  .++|+|||++|+++.          .++.|.+||..+.+.+..+.....    ......++++|
T Consensus        40 t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~sp  117 (361)
T 2oiz_A           40 NGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTT  117 (361)
T ss_dssp             TCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECT
T ss_pred             CCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECC
Confidence            34566677766655  899999999998875          367899999999998888764311    12356899999


Q ss_pred             cCCCCeEEEeec--CCeEEEEeCCCCCCCCCCeee-eecceeeEEEeeeeeccccccccCCCCcceeeccC-Ccee-e--
Q 021291           73 SIGLNKVISQGR--DGTVKCWDIENGGLSSNPSLT-IKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREV-GETV-D--  145 (314)
Q Consensus        73 ~~~~~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~--  145 (314)
                        ++++|+++..  +++|.+||+.+++.+.    . +.........+.+............+....+.+.. ++.. .  
T Consensus       118 --dg~~l~v~n~~~~~~v~v~d~~~~~~~~----~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~  191 (361)
T 2oiz_A          118 --DGKFIVLQNASPATSIGIVDVAKGDYVE----DVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSR  191 (361)
T ss_dssp             --TSSEEEEEEESSSEEEEEEETTTTEEEE----EEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEE
T ss_pred             --CCCEEEEECCCCCCeEEEEECCCCcEEE----EEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeecc
Confidence              9999998874  5899999999886432    2 22211111111111111111122223333333332 2211 0  


Q ss_pred             --ecCCCCCC---ceeccCCCceEEEeecCcCeEEEEecCCCcee--eeecccccCCCCCcCCCCCceeeeEEEecCCCC
Q 021291          146 --TDSLCDSK---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERC--TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKS  218 (314)
Q Consensus       146 --~~~~~~~~---~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~--~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~  218 (314)
                        ..+.....   +.+++++..++++  +.++.|.++|+......  ..+.....  ...+..........+. |+|+  
T Consensus       192 ~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~v~v~d~~~~~~~~~~~~~~~~~--~~~~~~~~p~g~~~~a-~~~d--  264 (361)
T 2oiz_A          192 SKQMFSVKDDPIFIAPALDKDKAHFV--SYYGNVYSADFSGDEVKVDGPWSLLND--EDKAKNWVPGGYNLVG-LHRA--  264 (361)
T ss_dssp             CCCCSCTTTSCBCSCCEECSSEEEEE--BTTSEEEEEECSSSSCEEEEEEESCCH--HHHHTTCEECCSSCEE-EETT--
T ss_pred             ccceEcCCCCceEEEecccCCEEEEE--eCCCeEEEEEecCCCceecccccccCc--cccccccccCCeeEEE-EecC--
Confidence              11111111   5567777666543  34789999998754321  12110000  0000000000111244 8987  


Q ss_pred             CCceEEEEee----------cCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCC--ee
Q 021291          219 QGFVNVLAGY----------EDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS--TY  286 (314)
Q Consensus       219 ~g~~~l~~g~----------~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~--~~  286 (314)
                       +..++++..          ..+.|.+||+.+ .+.+..+..+.  +.+++|+|+|++|++++. +.|.+||.+++  +.
T Consensus       265 -g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t-~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~  339 (361)
T 2oiz_A          265 -SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT-KQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKL  339 (361)
T ss_dssp             -TTEEEEEEESSCCTTCTTCCCSEEEEEETTT-TEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEE
T ss_pred             -CCeEEEEEccCCCcccccCCCceEEEEECCC-CcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCccee
Confidence             442334333          134899999998 88899998876  899999999999998887 99999999999  87


Q ss_pred             eEee-------eeeeecCCCc
Q 021291          287 VLFG-------IGFVCDQEGN  300 (314)
Q Consensus       287 ~~~~-------~~~~~~~~~~  300 (314)
                      +..+       .++.++|+|.
T Consensus       340 ~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          340 LRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             EEEETTSCSSEEEEEECCCSC
T ss_pred             eEEeccCCCCcEEEEecCCCC
Confidence            7653       3355666653

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.81  E-value=8.4e-18  Score=157.08  Aligned_cols=256  Identities=11%  Similarity=0.068  Sum_probs=174.0

Q ss_pred             ceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCC-CeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ-HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (314)
Q Consensus        10 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v   88 (314)
                      ....+.+|...+.++.|+++ .++++++.|+.++||.+.. +.....+..+.   .+...+|+|  +++.|+.+. ++.|
T Consensus       195 ~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~---~~~~~~~Sp--DG~~la~~~-~~~i  267 (1045)
T 1k32_A          195 AFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT---DYYPRHLNT--DGRRILFSK-GGSI  267 (1045)
T ss_dssp             EEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC---SSCEEEEEE--SSSCEEEEE-TTEE
T ss_pred             CeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC---CcceeeEcC--CCCEEEEEe-CCEE
Confidence            34566899999999999988 6778888899999998653 34444555453   256779999  999888874 8999


Q ss_pred             EEEeCCCCCCCCCCeeeeec-------------ceeeEEEee-eeeccccccccCCCCcceeeccCCceeeecCCCCCC-
Q 021291           89 KCWDIENGGLSSNPSLTIKT-------------NSYHFCKLS-LVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-  153 (314)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~-------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  153 (314)
                      .+||+....+     ..+..             .......++ +.+.......  .....+++........  +..+.. 
T Consensus       268 ~~~d~~~~~l-----~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~--~~~i~~~~~~~~~~~~--~~~~~~~  338 (1045)
T 1k32_A          268 YIFNPDTEKI-----EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS--RGQAFIQDVSGTYVLK--VPEPLRI  338 (1045)
T ss_dssp             EEECTTTCCE-----EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE--TTEEEEECTTSSBEEE--CSCCSCE
T ss_pred             EEecCCceEe-----eeeccCcccccccccccccccceeeecCCCCCEEEEEE--cCEEEEEcCCCCceEE--ccCCCcc
Confidence            9999944322     12221             123344455 4443332222  2333444444433222  223322 


Q ss_pred             ----ceeccCCCceEEEeecCcCeEE-EEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEee
Q 021291          154 ----DDVPAEGPKYMAVAGEQLSEVE-IWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY  228 (314)
Q Consensus       154 ----~~~~~~~~~~~~~~g~~d~~i~-vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~  228 (314)
                          ++|+ +|+.++. ++. +..+. +||+.+++.. .+.        +|    ...+..+. |+|+   |+ +|++++
T Consensus       339 ~~~~~~~s-dg~~l~~-~s~-~~~l~~~~d~~~~~~~-~l~--------~~----~~~~~~~~-~SpD---G~-~la~~~  397 (1045)
T 1k32_A          339 RYVRRGGD-TKVAFIH-GTR-EGDFLGIYDYRTGKAE-KFE--------EN----LGNVFAMG-VDRN---GK-FAVVAN  397 (1045)
T ss_dssp             EEEEECSS-SEEEEEE-EET-TEEEEEEEETTTCCEE-ECC--------CC----CCSEEEEE-ECTT---SS-EEEEEE
T ss_pred             eEEeeeEc-CCCeEEE-EEC-CCceEEEEECCCCCce-Eec--------CC----ccceeeeE-ECCC---CC-EEEEEC
Confidence                7899 8876654 333 67888 9998876543 232        23    34567777 9998   55 899999


Q ss_pred             cCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCC----------cEEEEecCCCeeeEe------eee
Q 021291          229 EDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQ----------KIVLYNLDHSTYVLF------GIG  292 (314)
Q Consensus       229 ~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg----------~i~iw~~~~~~~~~~------~~~  292 (314)
                      .++.|++||+.+ ++....+.+|...+.+++|+|+|++|++++.++          .|++||+.+++....      ...
T Consensus       398 ~~~~v~~~d~~t-g~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~  476 (1045)
T 1k32_A          398 DRFEIMTVDLET-GKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYA  476 (1045)
T ss_dssp             TTSEEEEEETTT-CCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEE
T ss_pred             CCCeEEEEECCC-CceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCC
Confidence            999999999997 777777778999999999999999998887654          899999998873321      233


Q ss_pred             eeecCCCceec
Q 021291          293 FVCDQEGNKFG  303 (314)
Q Consensus       293 ~~~~~~~~~~~  303 (314)
                      ..++|+|..+.
T Consensus       477 ~~~spdG~~l~  487 (1045)
T 1k32_A          477 PAFDADSKNLY  487 (1045)
T ss_dssp             EEECTTSCEEE
T ss_pred             ceEcCCCCEEE
Confidence            45778887554

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.80  E-value=3.1e-17  Score=133.86  Aligned_cols=211  Identities=11%  Similarity=0.096  Sum_probs=142.0

Q ss_pred             CEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeE-EEeecCCeEEEEeCCCCCCCCCCeeeeecc
Q 021291           31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKV-ISQGRDGTVKCWDIENGGLSSNPSLTIKTN  109 (314)
Q Consensus        31 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~  109 (314)
                      ++|++++.++.|++||..+++.+..+........+..++|+|  +++.+ +++..++.|.+||+.+++...    .+...
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~v~~~~~~~v~~~d~~~~~~~~----~~~~~   75 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAP--GGRIAYATVNKSESLVKIDLVTGETLG----RIDLS   75 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECT--TSSEEEEEETTTTEEEEEETTTCCEEE----EEECC
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcC--CCCEEEEEeCCCCeEEEEECCCCCeEe----eEEcC
Confidence            478999999999999999999888876443100378999999  88765 456668899999998876432    11111


Q ss_pred             eeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeec----------CcCeEEEEec
Q 021291          110 SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE----------QLSEVEIWDL  179 (314)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----------~d~~i~vwd~  179 (314)
                      ......-.+                                 ..++|+|+|+.++++...          .++.|.+||+
T Consensus        76 ~~~~~~~~~---------------------------------~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~  122 (337)
T 1pby_B           76 TPEERVKSL---------------------------------FGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDA  122 (337)
T ss_dssp             BTTEEEECT---------------------------------TCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEET
T ss_pred             Ccccccccc---------------------------------cceEECCCCCEEEEEecccccccccccccCceEEEEEC
Confidence            000000000                                 016799999877654311          3689999999


Q ss_pred             CCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeec---------
Q 021291          180 NTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV---------  250 (314)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~---------  250 (314)
                      .+++....+..             ...+..+. |+|+   |+ +++++  ++.|++||+.+ ++.+..+..         
T Consensus       123 ~~~~~~~~~~~-------------~~~~~~~~-~s~d---g~-~l~~~--~~~i~~~d~~~-~~~~~~~~~~~~~~~~~~  181 (337)
T 1pby_B          123 ETLSRRKAFEA-------------PRQITMLA-WARD---GS-KLYGL--GRDLHVMDPEA-GTLVEDKPIQSWEAETYA  181 (337)
T ss_dssp             TTTEEEEEEEC-------------CSSCCCEE-ECTT---SS-CEEEE--SSSEEEEETTT-TEEEEEECSTTTTTTTBC
T ss_pred             CCCcEEEEEeC-------------CCCcceeE-ECCC---CC-EEEEe--CCeEEEEECCC-CcEeeeeeccccCCCcee
Confidence            99887776652             11345565 9998   54 55555  67899999876 443332221         


Q ss_pred             ---------------------------------------------------------CCcceEEEEEeCCCCeEEEecCC
Q 021291          251 ---------------------------------------------------------HLEPVLCLSIDESCNGGISGGAD  273 (314)
Q Consensus       251 ---------------------------------------------------------h~~~v~~~~~~~~~~~l~s~s~d  273 (314)
                                                                               +...+.+++|+|++++|+++  +
T Consensus       182 s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~  259 (337)
T 1pby_B          182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--Y  259 (337)
T ss_dssp             CCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--E
T ss_pred             CCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--C
Confidence                                                                     12245568999999998888  7


Q ss_pred             CcEEEEecCCCeeeEe------eeeeeecCCCceec
Q 021291          274 QKIVLYNLDHSTYVLF------GIGFVCDQEGNKFG  303 (314)
Q Consensus       274 g~i~iw~~~~~~~~~~------~~~~~~~~~~~~~~  303 (314)
                      +.|++||+.+++.+..      ..+++++++|..+.
T Consensus       260 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  295 (337)
T 1pby_B          260 NVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVW  295 (337)
T ss_dssp             SEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEE
T ss_pred             CeEEEEECCCCcCcceecCCCceeeEEECCCCCEEE
Confidence            8999999999877654      23456778876544

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.79  E-value=1.8e-17  Score=138.12  Aligned_cols=218  Identities=11%  Similarity=0.027  Sum_probs=146.1

Q ss_pred             CCCCCceEEecCCCCceeE-----EEEccCCCEEEEecC-CC--eEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCC
Q 021291            5 PPPPDPVAVLRGHRASVTD-----VCFHQTKPILFAGTT-GG--ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGL   76 (314)
Q Consensus         5 ~~~~~~~~~l~~h~~~v~~-----~~~~~~~~~l~s~~~-dg--~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   76 (314)
                      +..+..+..+..|......     .+|+|||++|+.++. +|  .|.+||+.+++.......+..  .+..+.|+|  ++
T Consensus        17 ~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~--~~~~~~~sp--dg   92 (388)
T 3pe7_A           17 ASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGD--NTFGGFLSP--DD   92 (388)
T ss_dssp             TTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCB--CSSSCEECT--TS
T ss_pred             CCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCC--CccceEEcC--CC
Confidence            4556788888888877766     899999999988877 67  488899998887766655543  255778999  99


Q ss_pred             CeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCcee
Q 021291           77 NKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDV  156 (314)
Q Consensus        77 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (314)
                      +.|+.++.++.|++||+.+++...  +............                                      ..+
T Consensus        93 ~~l~~~~~~~~l~~~d~~~g~~~~--~~~~~~~~~~~~~--------------------------------------~~~  132 (388)
T 3pe7_A           93 DALFYVKDGRNLMRVDLATLEENV--VYQVPAEWVGYGT--------------------------------------WVA  132 (388)
T ss_dssp             SEEEEEETTTEEEEEETTTCCEEE--EEECCTTEEEEEE--------------------------------------EEE
T ss_pred             CEEEEEeCCCeEEEEECCCCccee--eeechhhcccccc--------------------------------------eeE
Confidence            999999999999999999886422  2222221111110                                      113


Q ss_pred             ccCCCceEEE--------------------eecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecC-
Q 021291          157 PAEGPKYMAV--------------------AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLP-  215 (314)
Q Consensus       157 ~~~~~~~~~~--------------------~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p-  215 (314)
                      ++++..++..                    ....+..|.+||+.+++......         +    ...+..+. |+| 
T Consensus       133 ~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~---------~----~~~~~~~~-~sp~  198 (388)
T 3pe7_A          133 NSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQ---------E----NQWLGHPI-YRPY  198 (388)
T ss_dssp             CTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEE---------E----SSCEEEEE-EETT
T ss_pred             CCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeec---------C----CccccccE-ECCC
Confidence            4555443321                    12234789999999887544333         1    22456676 999 


Q ss_pred             CCCCCceEEEEeec------CCcEEEEEccCCCCceEeeecCC--cceEEEEEeCCCCeEEEecCC-C----cEEEEecC
Q 021291          216 SKSQGFVNVLAGYE------DGSILVWDIRNPGIPLTAMKVHL--EPVLCLSIDESCNGGISGGAD-Q----KIVLYNLD  282 (314)
Q Consensus       216 ~~~~g~~~l~~g~~------dg~i~vwd~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~s~s~d-g----~i~iw~~~  282 (314)
                      +   |+ .|+....      ...|.++|... + ....+..+.  ..+..++|+|+|+.|+..+.+ +    .|++||++
T Consensus       199 d---g~-~l~~~~~~~~~~~~~~l~~~d~~~-~-~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~  272 (388)
T 3pe7_A          199 D---DS-TVAFCHEGPHDLVDARMWLINEDG-T-NMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPE  272 (388)
T ss_dssp             E---EE-EEEEEECSCTTTSSCSEEEEETTS-C-CCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTT
T ss_pred             C---CC-EEEEEEecCCCCCcceEEEEeCCC-C-ceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecC
Confidence            7   55 5555544      33788888764 3 334444444  358889999999987654432 2    39999999


Q ss_pred             CCee
Q 021291          283 HSTY  286 (314)
Q Consensus       283 ~~~~  286 (314)
                      +++.
T Consensus       273 ~g~~  276 (388)
T 3pe7_A          273 TLEN  276 (388)
T ss_dssp             TCCE
T ss_pred             CCce
Confidence            8874

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.79  E-value=8.9e-18  Score=156.91  Aligned_cols=240  Identities=9%  Similarity=0.001  Sum_probs=160.3

Q ss_pred             CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccC---------CcccEEEEEEc-ccCCCCe
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS---------AAHGIVSVATG-PSIGLNK   78 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~---------~~~~v~~~~~~-~~~~~~~   78 (314)
                      ...+.+.+|. .+...+|+|||++|+.+ .++.|.+||+... .+..+..+.         +...+.+++|+ |  +++.
T Consensus       236 ~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~p--dG~~  310 (1045)
T 1k32_A          236 KDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTE-KIEKIEIGDLESPEDRIISIPSKFAEDFSPL--DGDL  310 (1045)
T ss_dssp             CSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTC-CEEECCCCCCCBCCSEEEECGGGGEEEEEEC--GGGC
T ss_pred             CcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCce-EeeeeccCcccccccccccccccceeeecCC--CCCE
Confidence            3455666665 46788999999988887 5899999998544 343554421         11248999999 9  9999


Q ss_pred             EEEeecCCeEEEEeCCCCCCCCCCeeeeecc-eeeEEEeeeeeccccccccCCCCcc-eeeccCCceeeecCCCCCC---
Q 021291           79 VISQGRDGTVKCWDIENGGLSSNPSLTIKTN-SYHFCKLSLVKEPYANAKQANEPKD-CYEREVGETVDTDSLCDSK---  153 (314)
Q Consensus        79 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---  153 (314)
                      |++++ ++.|.+|++.+++...   +..... ......++ .+........ ..... +++.......  .+.++..   
T Consensus       311 la~~~-~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~s-dg~~l~~~s~-~~~l~~~~d~~~~~~~--~l~~~~~~~~  382 (1045)
T 1k32_A          311 IAFVS-RGQAFIQDVSGTYVLK---VPEPLRIRYVRRGGD-TKVAFIHGTR-EGDFLGIYDYRTGKAE--KFEENLGNVF  382 (1045)
T ss_dssp             EEEEE-TTEEEEECTTSSBEEE---CSCCSCEEEEEECSS-SEEEEEEEET-TEEEEEEEETTTCCEE--ECCCCCCSEE
T ss_pred             EEEEE-cCEEEEEcCCCCceEE---ccCCCcceEEeeeEc-CCCeEEEEEC-CCceEEEEECCCCCce--EecCCcccee
Confidence            99888 7899999998765321   111111 22222233 2211111111 11222 3344433322  2224433   


Q ss_pred             -ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecC--
Q 021291          154 -DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED--  230 (314)
Q Consensus       154 -~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~d--  230 (314)
                       ++|+|+|+.++  .++.++.|++||+.+++....+.        +|    ...+..+. |+||   |+ +|++++.+  
T Consensus       383 ~~~~SpDG~~la--~~~~~~~v~~~d~~tg~~~~~~~--------~~----~~~v~~~~-~SpD---G~-~la~~~~~~~  443 (1045)
T 1k32_A          383 AMGVDRNGKFAV--VANDRFEIMTVDLETGKPTVIER--------SR----EAMITDFT-ISDN---SR-FIAYGFPLKH  443 (1045)
T ss_dssp             EEEECTTSSEEE--EEETTSEEEEEETTTCCEEEEEE--------CS----SSCCCCEE-ECTT---SC-EEEEEEEECS
T ss_pred             eeEECCCCCEEE--EECCCCeEEEEECCCCceEEecc--------CC----CCCccceE-ECCC---CC-eEEEEecCcc
Confidence             89999998665  34557999999999988776665        44    33456666 9998   65 67766654  


Q ss_pred             --------CcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecC
Q 021291          231 --------GSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD  282 (314)
Q Consensus       231 --------g~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~  282 (314)
                              +.|++||+.+ ++ +..+..|...+..++|+|+|++|+.++.++...+|+..
T Consensus       444 ~~~~~~~~~~i~l~d~~~-g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~  501 (1045)
T 1k32_A          444 GETDGYVMQAIHVYDMEG-RK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV  501 (1045)
T ss_dssp             STTCSCCEEEEEEEETTT-TE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred             ccccCCCCCeEEEEECCC-Cc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchh
Confidence                    3899999987 55 67778888899999999999999999998888888754

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.79  E-value=1.4e-18  Score=156.37  Aligned_cols=203  Identities=8%  Similarity=-0.032  Sum_probs=138.1

Q ss_pred             eEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCC-cccEEEEEEcccCCCCeEEEeec---------CCeEEEE
Q 021291           22 TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA-AHGIVSVATGPSIGLNKVISQGR---------DGTVKCW   91 (314)
Q Consensus        22 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~~~---------dg~v~iw   91 (314)
                      ..++|+|+|++++++ .|+.|++||+.+++....+..+.. ...+.+++|+|  ||++|++++.         ++.|++|
T Consensus        19 ~~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~Sp--Dg~~la~~~~~~~~~~~s~~~~i~~~   95 (719)
T 1z68_A           19 FFPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSP--DRQFVYLESDYSKLWRYSYTATYYIY   95 (719)
T ss_dssp             CCCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECT--TSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             CccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECC--CCCeEEEEecCceeEEeecceEEEEE
Confidence            378999999666554 699999999999988777765531 01288999999  9999998876         7899999


Q ss_pred             eCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCc
Q 021291           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL  171 (314)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d  171 (314)
                      |+.+++....  ..+... .                                        ..++|||||+.++.  +. |
T Consensus        96 d~~~g~~~~~--~~l~~~-~----------------------------------------~~~~~SPDG~~la~--~~-~  129 (719)
T 1z68_A           96 DLSNGEFVRG--NELPRP-I----------------------------------------QYLCWSPVGSKLAY--VY-Q  129 (719)
T ss_dssp             ETTTTEECCS--SCCCSS-B----------------------------------------CCEEECSSTTCEEE--EE-T
T ss_pred             ECCCCccccc--eecCcc-c----------------------------------------ccceECCCCCEEEE--EE-C
Confidence            9998865210  011100 0                                        00569999987654  33 6


Q ss_pred             CeEEEEecCCCceeeeecccccCCCCCcCCCC-------------CceeeeEEEecCCCCCCceEEEEeecCC-------
Q 021291          172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKG-------------RGMCMAVQAYLPSKSQGFVNVLAGYEDG-------  231 (314)
Q Consensus       172 ~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~-------------~~~~~~~~~~~p~~~~g~~~l~~g~~dg-------  231 (314)
                      +.|++||+.+++.......       ++....             .....++. |+||   |+ .|+.++.|.       
T Consensus       130 ~~i~~~~~~~g~~~~l~~~-------~~~~~v~~g~~~~v~~ee~~~~~~~~~-wSPD---G~-~la~~~~d~~~~~~~~  197 (719)
T 1z68_A          130 NNIYLKQRPGDPPFQITFN-------GRENKIFNGIPDWVYEEEMLATKYALW-WSPN---GK-FLAYAEFNDTDIPVIA  197 (719)
T ss_dssp             TEEEEESSTTSCCEECCCC-------CBTTTEEESSCCHHHHHHTTCSSCCEE-ECTT---SS-EEEEEEEECTTSCEEE
T ss_pred             CeEEEEeCCCCCcEEEecC-------CCcCCeEcccccceeeeecccCcccEE-ECCC---CC-EEEEEEECCCCCceEE
Confidence            8999999988876433221       221100             01123666 9998   55 777776542       


Q ss_pred             ---------------------------cEEEEEccCCCCce--------EeeecCCcceEEEEEeCCCCeEEEecCC---
Q 021291          232 ---------------------------SILVWDIRNPGIPL--------TAMKVHLEPVLCLSIDESCNGGISGGAD---  273 (314)
Q Consensus       232 ---------------------------~i~vwd~~~~~~~~--------~~~~~h~~~v~~~~~~~~~~~l~s~s~d---  273 (314)
                                                 .|++||+.+ ++..        ..+.+|...+..++|+||++++++....   
T Consensus       198 ~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~  276 (719)
T 1z68_A          198 YSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTY-PAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQN  276 (719)
T ss_dssp             EEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSC-HHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTT
T ss_pred             eeccCCCCCccceeecCCCCCCCCCeeEEEEEECCC-CCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccC
Confidence                                       788999986 4432        1234688889999999998877774332   


Q ss_pred             -CcEEEEe----cCCCee
Q 021291          274 -QKIVLYN----LDHSTY  286 (314)
Q Consensus       274 -g~i~iw~----~~~~~~  286 (314)
                       ..|.+||    +.+++.
T Consensus       277 ~~~l~~~d~~~~~~~g~~  294 (719)
T 1z68_A          277 VSVLSICDFREDWQTWDC  294 (719)
T ss_dssp             EEEEEEEEECSSSSSEEC
T ss_pred             eEEEEEEcccCCCCCCce
Confidence             2488899    766654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.78  E-value=5.9e-17  Score=134.00  Aligned_cols=255  Identities=9%  Similarity=0.021  Sum_probs=150.7

Q ss_pred             CCCceeEEEEccCCCEEEEecCCCeEEEEeCC-CCeEEEEEeccCCcccEEEEEEcccCCCCe--EEEee----------
Q 021291           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTV-QHRTVSSSWVHSAAHGIVSVATGPSIGLNK--VISQG----------   83 (314)
Q Consensus        17 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--l~s~~----------   83 (314)
                      +...+..++|+|+|++|++++.+ .|.+|++. +++.......... ..+.+++|+|  ++++  +++++          
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-g~~~~~~~sp--dg~~l~~~~~~~~~~~~~~~~  113 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-GHPRANDADT--NTRAIFLLAAKQPPYAVYANP  113 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-SSGGGGCTTS--CCEEEEEEECSSTTCCEEEEE
T ss_pred             CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-CCCccEEECC--CCCEEEEEEecCCcceeccce
Confidence            34568899999999999998888 99999997 7776543332111 1245689999  9884  45553          


Q ss_pred             ---cCCeEEEEeCCC-CCCCCCCeeee----ecceeeEEEeeeeeccccccccCCCCcceeecc-CCcee-eecC--CC-
Q 021291           84 ---RDGTVKCWDIEN-GGLSSNPSLTI----KTNSYHFCKLSLVKEPYANAKQANEPKDCYERE-VGETV-DTDS--LC-  150 (314)
Q Consensus        84 ---~dg~v~iwd~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~--~~-  150 (314)
                         .++++.+|++.. +++..  ....    .........+++.+..............+|++. .++.. ....  .. 
T Consensus       114 ~~~~~g~v~v~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~  191 (365)
T 1jof_A          114 FYKFAGYGNVFSVSETGKLEK--NVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDP  191 (365)
T ss_dssp             ESSSCCEEEEEEECTTCCEEE--EEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSST
T ss_pred             eecCCceEEEEccCCCCcCcc--eEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCC
Confidence               689999999974 44321  1111    112334444555443322222223456667776 44322 1111  11 


Q ss_pred             CCC---ceeccCCCceEEEeecCcCeEEEEecC--CCceee---eecccccCCCCCcCCCC--CceeeeEEE-ecCCCCC
Q 021291          151 DSK---DDVPAEGPKYMAVAGEQLSEVEIWDLN--TAERCT---RLHQNSCGGSPNFSSKG--RGMCMAVQA-YLPSKSQ  219 (314)
Q Consensus       151 ~~~---~~~~~~~~~~~~~~g~~d~~i~vwd~~--~~~~~~---~~~~~~~~~~~~h~~~~--~~~~~~~~~-~~p~~~~  219 (314)
                      ...   ++|+|+|+.+++ ++..++.|.+|++.  +++...   .+.... ....+|....  ...+..+ + |+|+   
T Consensus       192 g~~p~~~~~spdg~~l~v-~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~i-~~~spd---  265 (365)
T 1jof_A          192 GDHPRWVAMHPTGNYLYA-LMEAGNRICEYVIDPATHMPVYTHHSFPLIP-PGIPDRDPETGKGLYRADV-CALTFS---  265 (365)
T ss_dssp             TCCEEEEEECTTSSEEEE-EETTTTEEEEEEECTTTCCEEEEEEEEESSC-TTCCCBCTTTSSBSEEEEE-EEECTT---
T ss_pred             CCCCCEeEECCCCCEEEE-EECCCCeEEEEEEeCCCCcEEEccceEEcCC-CCcCCcccccccccccccE-EEECCC---
Confidence            122   899999987665 45557899999765  454321   121000 0000110000  0023444 5 8998   


Q ss_pred             CceEEEEeec-CC-----cEEEEEccCCCCceE---eeecCCcceEEEEEeC---CCCeEEEecCC-CcEEEEecCCC
Q 021291          220 GFVNVLAGYE-DG-----SILVWDIRNPGIPLT---AMKVHLEPVLCLSIDE---SCNGGISGGAD-QKIVLYNLDHS  284 (314)
Q Consensus       220 g~~~l~~g~~-dg-----~i~vwd~~~~~~~~~---~~~~h~~~v~~~~~~~---~~~~l~s~s~d-g~i~iw~~~~~  284 (314)
                      |+ +|+++.. +.     .|.+|++...++...   ....+...+..++|+|   +|++|++++.+ +.|.+|+++..
T Consensus       266 G~-~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          266 GK-YMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             SS-EEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CC-EEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            66 5555543 23     899999963255433   2333555677899999   89999888764 89999999876

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.74  E-value=1.4e-15  Score=125.45  Aligned_cols=252  Identities=10%  Similarity=0.098  Sum_probs=148.0

Q ss_pred             cCCCEEEEec----CCCeEEEEeC--CCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC----CeEEEEeCCC--
Q 021291           28 QTKPILFAGT----TGGELRIWDT--VQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD----GTVKCWDIEN--   95 (314)
Q Consensus        28 ~~~~~l~s~~----~dg~v~iwd~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~v~iwd~~~--   95 (314)
                      +...+++.|+    .++.|.+|++  .+++.......+.  ..+..++|+|  ++++|++++.+    +.|.+|++..  
T Consensus        11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~--~~p~~l~~sp--dg~~l~~~~~~~~~~~~v~~~~~~~~~   86 (361)
T 3scy_A           11 DSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEV--ANPSYLIPSA--DGKFVYSVNEFSKDQAAVSAFAFDKEK   86 (361)
T ss_dssp             GGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEEC--SCCCSEEECT--TSSEEEEEECCSSTTCEEEEEEEETTT
T ss_pred             CCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccC--CCCceEEECC--CCCEEEEEEccCCCCCcEEEEEEeCCC
Confidence            3344566664    4668999876  4454433222233  4478899999  99999998886    7999999875  


Q ss_pred             CCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeec-----CCC-----------CCC-ceecc
Q 021291           96 GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTD-----SLC-----------DSK-DDVPA  158 (314)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-----------~~~-~~~~~  158 (314)
                      ++...  +..........+.+.+............+...+|++.....+...     ..+           |.. ++|+|
T Consensus        87 g~~~~--~~~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp  164 (361)
T 3scy_A           87 GTLHL--LNTQKTMGADPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP  164 (361)
T ss_dssp             TEEEE--EEEEECSSSCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT
T ss_pred             CcEEE--eeEeccCCCCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC
Confidence            33211  222222222233333322222222333455666776543221110     111           112 89999


Q ss_pred             CCCceEEEeecCcCeEEEEecCCCce------e------eeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEE
Q 021291          159 EGPKYMAVAGEQLSEVEIWDLNTAER------C------TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA  226 (314)
Q Consensus       159 ~~~~~~~~~g~~d~~i~vwd~~~~~~------~------~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~  226 (314)
                      +|+.+++ ++..++.|.+|++.....      +      .....       .    .......+. |+|+   |+ ++++
T Consensus       165 dg~~l~~-~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~-------~----~~~~~~~~~-~spd---g~-~l~v  227 (361)
T 3scy_A          165 DGKYLLA-DDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV-------A----PGSGPRHLI-FNSD---GK-FAYL  227 (361)
T ss_dssp             TSSEEEE-EETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC-------C----TTCCEEEEE-ECTT---SS-EEEE
T ss_pred             CCCEEEE-EeCCCCEEEEEEEcCCCCcccccceeecccccceec-------C----CCCCCeEEE-EcCC---CC-EEEE
Confidence            9987765 455578999998875431      1      11111       1    122345676 9998   65 5555


Q ss_pred             ee-cCCcEEEEEccCCCCc--eEeee---cCCcceEEEEEeCCCCeEEEecC--CCcEEEEecC--CCe--eeEe-----
Q 021291          227 GY-EDGSILVWDIRNPGIP--LTAMK---VHLEPVLCLSIDESCNGGISGGA--DQKIVLYNLD--HST--YVLF-----  289 (314)
Q Consensus       227 g~-~dg~i~vwd~~~~~~~--~~~~~---~h~~~v~~~~~~~~~~~l~s~s~--dg~i~iw~~~--~~~--~~~~-----  289 (314)
                      ++ .++.|.+||+.+ +..  +..+.   .+......++|+|+|++|+++..  ++.|.+|+++  +++  .+..     
T Consensus       228 ~~~~~~~v~v~~~~~-g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~  306 (361)
T 3scy_A          228 INEIGGTVIAFRYAD-GMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGI  306 (361)
T ss_dssp             EETTTCEEEEEEEET-TEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSS
T ss_pred             EcCCCCeEEEEEecC-CceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCC
Confidence            44 789999999985 533  22232   23345789999999998866554  5899999996  343  2221     


Q ss_pred             -eeeeeecCCCceec
Q 021291          290 -GIGFVCDQEGNKFG  303 (314)
Q Consensus       290 -~~~~~~~~~~~~~~  303 (314)
                       ...++++|+|..+.
T Consensus       307 ~~~~~~~spdg~~l~  321 (361)
T 3scy_A          307 HPRNFIITPNGKYLL  321 (361)
T ss_dssp             CCCEEEECTTSCEEE
T ss_pred             CCceEEECCCCCEEE
Confidence             24567888887543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.74  E-value=5.1e-15  Score=120.60  Aligned_cols=246  Identities=11%  Similarity=0.023  Sum_probs=159.6

Q ss_pred             CCceeEEEEccCCCEEEEecCC------------------------CeEEEEeCCCCeEEEEEeccCCcccEEEEEEccc
Q 021291           18 RASVTDVCFHQTKPILFAGTTG------------------------GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS   73 (314)
Q Consensus        18 ~~~v~~~~~~~~~~~l~s~~~d------------------------g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~   73 (314)
                      -+.+.+++++|+|+++++...+                        +.|.+||..+++.+..+... .......++++| 
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~-~~~~p~gia~d~-  100 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKN-LFYLPHGLSIDT-  100 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTT-TCSSEEEEEECT-
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCC-ccCCceEEEECC-
Confidence            4679999999999999988877                        47999999888887665422 113488999999 


Q ss_pred             CCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC
Q 021291           74 IGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK  153 (314)
Q Consensus        74 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (314)
                       +++++++...++.|++||.......   +..+........                 ..            ..+.....
T Consensus       101 -~g~l~v~d~~~~~v~~~~~~g~~~~---~~~~~~~~~~g~-----------------~~------------~~~~~P~~  147 (329)
T 3fvz_A          101 -DGNYWVTDVALHQVFKLDPHSKEGP---LLILGRSMQPGS-----------------DQ------------NHFCQPTD  147 (329)
T ss_dssp             -TSCEEEEETTTTEEEEECTTCSSCC---SEEESBTTBCCC-----------------ST------------TCCSSEEE
T ss_pred             -CCCEEEEECCCCEEEEEeCCCCeEE---EEEecccCCCCC-----------------Cc------------cccCCCcE
Confidence             9898888888999999998654211   111111000000                 00            00000000


Q ss_pred             ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcE
Q 021291          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI  233 (314)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i  233 (314)
                      ++++|++..++++.+..++.|++|| .+++.+..+........ .. .........++ ++|++  +. ++++...++.|
T Consensus       148 ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~-~~-~~~~~~p~gia-~d~~~--g~-l~v~d~~~~~I  220 (329)
T 3fvz_A          148 VAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSS-PR-PGQFSVPHSLA-LVPHL--DQ-LCVADRENGRI  220 (329)
T ss_dssp             EEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSS-CC-TTEESCEEEEE-EETTT--TE-EEEEETTTTEE
T ss_pred             EEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCC-CC-CcccCCCcEEE-EECCC--CE-EEEEECCCCEE
Confidence            6788844445553322478999999 56776666642100000 00 00112366776 99872  33 77888889999


Q ss_pred             EEEEccCCCCceEeee--cCCcceEEEEEeC------CCCeEEEecCCCcEEEEecCCCeeeEe----------eeeeee
Q 021291          234 LVWDIRNPGIPLTAMK--VHLEPVLCLSIDE------SCNGGISGGADQKIVLYNLDHSTYVLF----------GIGFVC  295 (314)
Q Consensus       234 ~vwd~~~~~~~~~~~~--~h~~~v~~~~~~~------~~~~l~s~s~dg~i~iw~~~~~~~~~~----------~~~~~~  295 (314)
                      ++||..+ ++.+..+.  .+...+..++|+|      ++..+++.+.+..|++|++.+++.+..          ..++++
T Consensus       221 ~~~~~~~-G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~  299 (329)
T 3fvz_A          221 QCFKTDT-KEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVA  299 (329)
T ss_dssp             EEEETTT-CCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEE
T ss_pred             EEEECCC-CcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEE
Confidence            9999986 77777774  4566788999998      444444445566899999998887665          346778


Q ss_pred             cCCCceeceee
Q 021291          296 DQEGNKFGTTW  306 (314)
Q Consensus       296 ~~~~~~~~~~w  306 (314)
                      +++|.++.+.+
T Consensus       300 ~~dG~lyvad~  310 (329)
T 3fvz_A          300 SEDGTVYIGDA  310 (329)
T ss_dssp             CTTSEEEEEES
T ss_pred             CCCCCEEEEEC
Confidence            89987777654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.73  E-value=2.4e-16  Score=138.44  Aligned_cols=196  Identities=10%  Similarity=-0.039  Sum_probs=128.3

Q ss_pred             ccEEEEEEcccCCCCeEEEeec-CCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccC-C--CCcceeec
Q 021291           63 HGIVSVATGPSIGLNKVISQGR-DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA-N--EPKDCYER  138 (314)
Q Consensus        63 ~~v~~~~~~~~~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~  138 (314)
                      .+|.+++|+|  ||+.|++++. ||+++||++.+++..+  +............+++.  ........ +  ....+|.+
T Consensus        22 ~~~~~~~~~~--DG~~la~~s~~~g~~~lw~~~~g~~~~--lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~   95 (582)
T 3o4h_A           22 VEKYSLQGVV--DGDKLLVVGFSEGSVNAYLYDGGETVK--LNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKV   95 (582)
T ss_dssp             SCEEEEEEEE--TTTEEEEEEEETTEEEEEEEETTEEEE--CCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEE
T ss_pred             cchheeecCC--CCCeEEEEEccCCceeEEEEcCCCcEe--eecccccccccccCCCC--eEEEEeccCCCCcceEEEEE
Confidence            3599999999  9999998887 9999999987664321  11111112222333322  11111111 1  12234434


Q ss_pred             cC--CceeeecCC--CCCCceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEec
Q 021291          139 EV--GETVDTDSL--CDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYL  214 (314)
Q Consensus       139 ~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  214 (314)
                      ..  .........  ++...+|+|+++.+++++++.+ .+.+||+.+++......        .+     .  .++. |+
T Consensus        96 ~~~~~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~-~~~l~d~~~g~~~~l~~--------~~-----~--~~~~-~s  158 (582)
T 3o4h_A           96 NTSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATED-RVALYALDGGGLRELAR--------LP-----G--FGFV-SD  158 (582)
T ss_dssp             ETTSTTCCEECTTSCSBEEEEEEECSSCEEEEEECSS-CEEEEEEETTEEEEEEE--------ES-----S--CEEE-EE
T ss_pred             eccCCCccccccCCCCceeeeeCCCCCeEEEEecCCC-CceEEEccCCcEEEeec--------CC-----C--ceEE-EC
Confidence            33  221111111  1112789999988777777654 45599999887654443        11     1  5665 99


Q ss_pred             CCCCCCceEEEEeecC----CcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCC--cEEEEecCCCeee
Q 021291          215 PSKSQGFVNVLAGYED----GSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQ--KIVLYNLDHSTYV  287 (314)
Q Consensus       215 p~~~~g~~~l~~g~~d----g~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg--~i~iw~~~~~~~~  287 (314)
                      ||   |+ +|++++.+    +.|++||+.+ ++. ..+..|...+..++|+|||++|++++.++  .|++||+++++..
T Consensus       159 pD---G~-~la~~~~~~~~~~~i~~~d~~~-g~~-~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~  231 (582)
T 3o4h_A          159 IR---GD-LIAGLGFFGGGRVSLFTSNLSS-GGL-RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE  231 (582)
T ss_dssp             EE---TT-EEEEEEEEETTEEEEEEEETTT-CCC-EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred             CC---CC-EEEEEEEcCCCCeEEEEEcCCC-CCc-eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence            98   66 78877666    7899999986 544 46788889999999999999999888888  8999999988766

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.72  E-value=6e-16  Score=129.17  Aligned_cols=255  Identities=9%  Similarity=-0.015  Sum_probs=146.8

Q ss_pred             CCCCCceEEecCCCCc-----eeEEEEccCCCEEEEecC---CCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCC
Q 021291            5 PPPPDPVAVLRGHRAS-----VTDVCFHQTKPILFAGTT---GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGL   76 (314)
Q Consensus         5 ~~~~~~~~~l~~h~~~-----v~~~~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   76 (314)
                      +..++.+..+..+...     +..++|+|||++|+....   +..|.+||+.+++.......+.  .....+.|+|  ++
T Consensus        17 ~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~--~~~~~~~~sp--dg   92 (396)
T 3c5m_A           17 SDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKG--DNTFGGFIST--DE   92 (396)
T ss_dssp             TTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSC--BCTTTCEECT--TS
T ss_pred             CCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCC--CccccceECC--CC
Confidence            4556677778766554     788999999999876643   3478999998887654433222  1133478999  99


Q ss_pred             CeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeE---EEee------------eeeccccc----cc----cCCCCc
Q 021291           77 NKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHF---CKLS------------LVKEPYAN----AK----QANEPK  133 (314)
Q Consensus        77 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~------------~~~~~~~~----~~----~~~~~~  133 (314)
                      +.|+.++.++.|.+||+.+++...  +..........   ..+.            ....+...    ..    ......
T Consensus        93 ~~l~~~~~~~~l~~~d~~~~~~~~--~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l  170 (396)
T 3c5m_A           93 RAFFYVKNELNLMKVDLETLEEQV--IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRL  170 (396)
T ss_dssp             SEEEEEETTTEEEEEETTTCCEEE--EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEE
T ss_pred             CEEEEEEcCCcEEEEECCCCCcEE--EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceE
Confidence            999999999999999998876422  22222211000   0000            01111110    00    112233


Q ss_pred             ceeeccCCceeeecCCCCCC---ceecc-CCCceEEEeecCc----CeEEEEecCCCceeeeecccccCCCCCcCCCCCc
Q 021291          134 DCYEREVGETVDTDSLCDSK---DDVPA-EGPKYMAVAGEQL----SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRG  205 (314)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~g~~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~  205 (314)
                      ..+++..+...... .....   +.|+| ++..+++++....    ..|.+||+..++. ..+.        .+.  ...
T Consensus       171 ~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~--------~~~--~~~  238 (396)
T 3c5m_A          171 IKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-RKIK--------EHA--EGE  238 (396)
T ss_dssp             EEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-EESS--------CCC--TTE
T ss_pred             EEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce-eEee--------ccC--CCc
Confidence            34454444322211 11111   78999 7766655443222    4688999876543 2222        110  122


Q ss_pred             eeeeEEEecCCCCCCceEEEEeecC-----CcEEEEEccCCCCceEeeecCCcceEEEEEeC-CCCeEEEec--------
Q 021291          206 MCMAVQAYLPSKSQGFVNVLAGYED-----GSILVWDIRNPGIPLTAMKVHLEPVLCLSIDE-SCNGGISGG--------  271 (314)
Q Consensus       206 ~~~~~~~~~p~~~~g~~~l~~g~~d-----g~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s--------  271 (314)
                      .+..+. |+|+   |+ .|+.++.+     +.|++||+.+ ++... +..... .. +.|++ +|+++++++        
T Consensus       239 ~~~~~~-~spd---g~-~l~~~~~~~~~~~~~l~~~d~~~-g~~~~-l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~  309 (396)
T 3c5m_A          239 SCTHEF-WIPD---GS-AMAYVSYFKGQTDRVIYKANPET-LENEE-VMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVA  309 (396)
T ss_dssp             EEEEEE-ECTT---SS-CEEEEEEETTTCCEEEEEECTTT-CCEEE-EEECCS-EE-EEEECSSSSEEEEEECCC-----
T ss_pred             cccceE-ECCC---CC-EEEEEecCCCCccceEEEEECCC-CCeEE-eeeCCC-CC-CCccCCCCceEEEecCCcceeec
Confidence            455666 9998   55 44444332     4499999986 54332 222222 23 88999 999887754        


Q ss_pred             --------CCCcEEEEecCCCee
Q 021291          272 --------ADQKIVLYNLDHSTY  286 (314)
Q Consensus       272 --------~dg~i~iw~~~~~~~  286 (314)
                              .++.|++||+.+++.
T Consensus       310 ~~~~~~~~~~~~i~~~d~~~~~~  332 (396)
T 3c5m_A          310 DADSYNIENDPFLYVLNTKAKSA  332 (396)
T ss_dssp             -----CCCCCCEEEEEETTTTBC
T ss_pred             cccccccCCCCcEEEEecccCce
Confidence                    347899999987764

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.72  E-value=5.2e-16  Score=139.97  Aligned_cols=249  Identities=8%  Similarity=-0.028  Sum_probs=152.8

Q ss_pred             CCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCc-c--cEEEEEEcccCCCCeEEEeecC---------
Q 021291           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAA-H--GIVSVATGPSIGLNKVISQGRD---------   85 (314)
Q Consensus        18 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~-~--~v~~~~~~~~~~~~~l~s~~~d---------   85 (314)
                      ......++|+|||++|+++  ||.|++||+.++++...+..|... .  ....++|+|  |+++|+.++.+         
T Consensus        16 ~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp--dg~~l~~~~~~~~~~r~~~~   91 (740)
T 4a5s_A           16 RLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP--DGQFILLEYNYVKQWRHSYT   91 (740)
T ss_dssp             CCCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECT--TSSEEEEEEEEEECSSSCEE
T ss_pred             cccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECC--CCCEEEEEECCeeeEEEccc
Confidence            3456789999999999886  999999999999988777776532 1  124488999  99999998876         


Q ss_pred             CeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCC--------------
Q 021291           86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCD--------------  151 (314)
Q Consensus        86 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------  151 (314)
                      +.+.+||+.+++...  + ...........+++++...+..  ......+++...+........++              
T Consensus        92 ~~~~~~d~~~~~~~~--l-~~~~~~~~~~~~SPdG~~la~~--~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~  166 (740)
T 4a5s_A           92 ASYDIYDLNKRQLIT--E-ERIPNNTQWVTWSPVGHKLAYV--WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYE  166 (740)
T ss_dssp             EEEEEEETTTTEECC--S-SCCCTTEEEEEECSSTTCEEEE--ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHH
T ss_pred             eEEEEEECCCCcEEE--c-ccCCCcceeeEECCCCCEEEEE--ECCeEEEEECCCCceEEEcCCCCccceecCccccccc
Confidence            566799999987543  2 1222334455566655544333  22333344444433222222221              


Q ss_pred             -------CCceeccCCCceEEEeecC----------------------------------cCeEEEEecCC---Cc--ee
Q 021291          152 -------SKDDVPAEGPKYMAVAGEQ----------------------------------LSEVEIWDLNT---AE--RC  185 (314)
Q Consensus       152 -------~~~~~~~~~~~~~~~~g~~----------------------------------d~~i~vwd~~~---~~--~~  185 (314)
                             ..+.|||||+.++..+...                                  +.+|++||+.+   ++  ..
T Consensus       167 ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~  246 (740)
T 4a5s_A          167 EEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATS  246 (740)
T ss_dssp             HHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCE
T ss_pred             chhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceE
Confidence                   1267999999776543110                                  11577888887   63  12


Q ss_pred             eeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEee----cCCcEEEEEccCCCC------ceEee--ecCCc
Q 021291          186 TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY----EDGSILVWDIRNPGI------PLTAM--KVHLE  253 (314)
Q Consensus       186 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~----~dg~i~vwd~~~~~~------~~~~~--~~h~~  253 (314)
                      ..+..+      .........+..+. |+||   |+ .++...    .+..|++||+.+ ++      .+..+  ..|..
T Consensus       247 ~~l~~~------~~~~~~~~~~~~~~-wspd---g~-~~~~~~~r~~~~~~i~~~d~~t-g~~~~~~~~~~~l~~~~~~~  314 (740)
T 4a5s_A          247 IQITAP------ASMLIGDHYLCDVT-WATQ---ER-ISLQWLRRIQNYSVMDICDYDE-SSGRWNCLVARQHIEMSTTG  314 (740)
T ss_dssp             EEECCC------HHHHTSCEEEEEEE-EEET---TE-EEEEEEESSTTEEEEEEEEEET-TTTEEEECGGGCEEEECSSS
T ss_pred             EEecCC------ccCCCCCeEEEEEE-EeCC---Ce-EEEEEeCCCCCEEEEEEEECCC-CccccceeEEEEeeeccCCc
Confidence            222210      00000244677887 9998   55 444432    234799999987 54      12222  45666


Q ss_pred             ceE-----EEEEeCCCCeEE-EecC-CC--cEEEEecCCCeee
Q 021291          254 PVL-----CLSIDESCNGGI-SGGA-DQ--KIVLYNLDHSTYV  287 (314)
Q Consensus       254 ~v~-----~~~~~~~~~~l~-s~s~-dg--~i~iw~~~~~~~~  287 (314)
                      .|.     .+.|+|||+.|+ ..+. +|  .|++||++.++..
T Consensus       315 ~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~  357 (740)
T 4a5s_A          315 WVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT  357 (740)
T ss_dssp             CSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE
T ss_pred             eEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE
Confidence            554     789999999876 5553 44  5888888766543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.72  E-value=4.3e-17  Score=146.70  Aligned_cols=234  Identities=7%  Similarity=-0.039  Sum_probs=140.2

Q ss_pred             CceEEecCCCC---ceeEEEEccCCCEEEEecC---------CCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCC
Q 021291            9 DPVAVLRGHRA---SVTDVCFHQTKPILFAGTT---------GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGL   76 (314)
Q Consensus         9 ~~~~~l~~h~~---~v~~~~~~~~~~~l~s~~~---------dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   76 (314)
                      ++...+.+|..   .|.+++|||||++|++++.         |+.|++||+.+++.+..... .  ..+..++|+|  ||
T Consensus        47 ~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l-~--~~~~~~~~SP--DG  121 (719)
T 1z68_A           47 QSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL-P--RPIQYLCWSP--VG  121 (719)
T ss_dssp             CEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC-C--SSBCCEEECS--ST
T ss_pred             cEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec-C--cccccceECC--CC
Confidence            44445554443   3899999999999998876         78999999998876211111 2  3488999999  99


Q ss_pred             CeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCC-CCCce
Q 021291           77 NKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLC-DSKDD  155 (314)
Q Consensus        77 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  155 (314)
                      +.|+.+. ++.|++||+.+++...  + ........  .+.            +....        ........ ...++
T Consensus       122 ~~la~~~-~~~i~~~~~~~g~~~~--l-~~~~~~~~--v~~------------g~~~~--------v~~ee~~~~~~~~~  175 (719)
T 1z68_A          122 SKLAYVY-QNNIYLKQRPGDPPFQ--I-TFNGRENK--IFN------------GIPDW--------VYEEEMLATKYALW  175 (719)
T ss_dssp             TCEEEEE-TTEEEEESSTTSCCEE--C-CCCCBTTT--EEE------------SSCCH--------HHHHHTTCSSCCEE
T ss_pred             CEEEEEE-CCeEEEEeCCCCCcEE--E-ecCCCcCC--eEc------------ccccc--------eeeeecccCcccEE
Confidence            9999886 7899999998876421  1 10000000  000            00000        00000000 01177


Q ss_pred             eccCCCceEEEeecC--------------------------------cCeEEEEecCCCcee--eeecccccCCCCCcCC
Q 021291          156 VPAEGPKYMAVAGEQ--------------------------------LSEVEIWDLNTAERC--TRLHQNSCGGSPNFSS  201 (314)
Q Consensus       156 ~~~~~~~~~~~~g~~--------------------------------d~~i~vwd~~~~~~~--~~~~~~~~~~~~~h~~  201 (314)
                      |+|||+.++..+...                                +..|++||+.+++..  ..+..+.  ...+|  
T Consensus       176 wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~--~~~~~--  251 (719)
T 1z68_A          176 WSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPA--MIASS--  251 (719)
T ss_dssp             ECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCH--HHHTS--
T ss_pred             ECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCc--cCCCC--
Confidence            999998776533221                                117889999887653  1111000  00022  


Q ss_pred             CCCceeeeEEEecCCCCCCceEEEEeecC----CcEEEEE----ccCCCCceEee----ecCCcceE-----EEEEeCCC
Q 021291          202 KGRGMCMAVQAYLPSKSQGFVNVLAGYED----GSILVWD----IRNPGIPLTAM----KVHLEPVL-----CLSIDESC  264 (314)
Q Consensus       202 ~~~~~~~~~~~~~p~~~~g~~~l~~g~~d----g~i~vwd----~~~~~~~~~~~----~~h~~~v~-----~~~~~~~~  264 (314)
                        ...+..+. |+||   ++ ++++....    ..|.+||    ..+ +++...+    .+|...+.     .+.|+|+|
T Consensus       252 --~~~~~~~~-~SpD---~~-~~~~~~~~~~~~~~l~~~d~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg  323 (719)
T 1z68_A          252 --DYYFSWLT-WVTD---ER-VCLQWLKRVQNVSVLSICDFREDWQT-WDCPKTQEHIEESRTGWAGGFFVSTPVFSYDA  323 (719)
T ss_dssp             --CEEEEEEE-ESSS---SE-EEEEEEESSTTEEEEEEEEECSSSSS-EECCGGGEEEEECSSSCSSSSSCCCCEECTTS
T ss_pred             --cceEEEeE-EeCC---Ce-EEEEEeccccCeEEEEEEcccCCCCC-CceEEEEecccccCCceEccccCCccEECCCC
Confidence              44677887 9998   54 56654322    2488899    765 5555444    46777776     88999999


Q ss_pred             CeEEE--ecCCC--cEEEEecCCCe
Q 021291          265 NGGIS--GGADQ--KIVLYNLDHST  285 (314)
Q Consensus       265 ~~l~s--~s~dg--~i~iw~~~~~~  285 (314)
                      +.|+.  ...+|  .|.+|++..++
T Consensus       324 ~~l~~~~~~~~g~~~l~~~~~~~~~  348 (719)
T 1z68_A          324 ISYYKIFSDKDGYKHIHYIKDTVEN  348 (719)
T ss_dssp             SCEEEEEECTTSCEEEEEESSCSTT
T ss_pred             CeEEEEEEccCCceEEEEEECCCCc
Confidence            96543  44555  46677776654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.71  E-value=2.8e-14  Score=113.77  Aligned_cols=238  Identities=8%  Similarity=0.075  Sum_probs=146.2

Q ss_pred             CCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccC----CcccEEEEEEc-ccCCCCeEEEeec-CCeEE
Q 021291           16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS----AAHGIVSVATG-PSIGLNKVISQGR-DGTVK   89 (314)
Q Consensus        16 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~----~~~~v~~~~~~-~~~~~~~l~s~~~-dg~v~   89 (314)
                      +|-..+.+++++++++++++...++.|.+||.+ ++.+..+....    ....+..+++. +  ++.++++... ++.|.
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~--~g~l~v~~~~~~~~i~  103 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRN--SGDIIVTERSPTHQIQ  103 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETT--TTEEEEEECGGGCEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcC--CCeEEEEcCCCCCEEE
Confidence            345678999999999988988899999999976 66666664211    11348899994 5  6566665543 88999


Q ss_pred             EEeCCCCCCCCCCeeeeec---ceeeEEEeeeeeccccccc-cCCCCcceeeccCCceeeecCCCCCC----ceeccCCC
Q 021291           90 CWDIENGGLSSNPSLTIKT---NSYHFCKLSLVKEPYANAK-QANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGP  161 (314)
Q Consensus        90 iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  161 (314)
                      +||. +++...    .+..   .......+...+  ..... ........++.............+..    ++++++|+
T Consensus       104 ~~d~-~g~~~~----~~~~~~~~~~~~i~~~~~g--~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~  176 (286)
T 1q7f_A          104 IYNQ-YGQFVR----KFGATILQHPRGVTVDNKG--RIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQE  176 (286)
T ss_dssp             EECT-TSCEEE----EECTTTCSCEEEEEECTTS--CEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSE
T ss_pred             EECC-CCcEEE----EecCccCCCceEEEEeCCC--CEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCC
Confidence            9994 443321    1211   112222222221  11111 11222333332221111111112211    88999886


Q ss_pred             ceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCC-cEEEEEccC
Q 021291          162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG-SILVWDIRN  240 (314)
Q Consensus       162 ~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg-~i~vwd~~~  240 (314)
                       +++ +...++.|++||.. ++.+..+...      ++    ...+..++ ++|+   |+ ++++...++ .|.+||.. 
T Consensus       177 -l~v-~~~~~~~i~~~~~~-g~~~~~~~~~------g~----~~~p~~i~-~d~~---G~-l~v~~~~~~~~i~~~~~~-  237 (286)
T 1q7f_A          177 -IFI-SDNRAHCVKVFNYE-GQYLRQIGGE------GI----TNYPIGVG-INSN---GE-ILIADNHNNFNLTIFTQD-  237 (286)
T ss_dssp             -EEE-EEGGGTEEEEEETT-CCEEEEESCT------TT----SCSEEEEE-ECTT---CC-EEEEECSSSCEEEEECTT-
T ss_pred             -EEE-EECCCCEEEEEcCC-CCEEEEEccC------Cc----cCCCcEEE-ECCC---CC-EEEEeCCCCEEEEEECCC-
Confidence             444 55557899999974 5555555410      11    23466776 9987   55 677776675 99999964 


Q ss_pred             CCCceEeeecCCc--ceEEEEEeCCCCeEEEecCCCcEEEEecCCC
Q 021291          241 PGIPLTAMKVHLE--PVLCLSIDESCNGGISGGADQKIVLYNLDHS  284 (314)
Q Consensus       241 ~~~~~~~~~~h~~--~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~  284 (314)
                       ++.+..+..+..  .+.+++++++|+++++ +.|+.|++|++...
T Consensus       238 -g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          238 -GQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             -SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             -CCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence             666777765543  4789999999987777 57999999998654

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.71  E-value=2e-15  Score=125.72  Aligned_cols=254  Identities=11%  Similarity=-0.023  Sum_probs=150.4

Q ss_pred             CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEE--EcccCCCCeEEEe----
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA--TGPSIGLNKVISQ----   82 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~l~s~----   82 (314)
                      +..+...+|...+..++|+|||+.|+.++.++.|++||+.+++....+..+..  .+....  ++|  ++.+++..    
T Consensus        71 ~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~--~~~~~~~~~~~--dg~~l~~~~~~~  146 (388)
T 3pe7_A           71 VATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAE--WVGYGTWVANS--DCTKLVGIEIRR  146 (388)
T ss_dssp             EEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT--EEEEEEEEECT--TSSEEEEEEEEG
T ss_pred             ceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhh--cccccceeECC--CCCeeccccccC
Confidence            34444556666666789999999999999999999999999988777766653  254444  477  88887742    


Q ss_pred             ------------------ecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeee-eeccccccccCC---CCcceeeccC
Q 021291           83 ------------------GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSL-VKEPYANAKQAN---EPKDCYEREV  140 (314)
Q Consensus        83 ------------------~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~  140 (314)
                                        ..+..|.+||+.+++...  + ...........+++ .+..........   ....++.+..
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~--l-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~  223 (388)
T 3pe7_A          147 EDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV--I-LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINE  223 (388)
T ss_dssp             GGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE--E-EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEET
T ss_pred             cccccccccchhhhhhccCCcceEEEEECCCCceEE--e-ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeC
Confidence                              245789999999886422  2 22222234445555 443333322221   1234444432


Q ss_pred             C-ceeeecCCCCC-C----ceeccCCCceEEEeecCcC---eEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEE
Q 021291          141 G-ETVDTDSLCDS-K----DDVPAEGPKYMAVAGEQLS---EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQ  211 (314)
Q Consensus       141 ~-~~~~~~~~~~~-~----~~~~~~~~~~~~~~g~~d~---~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  211 (314)
                      . ........... .    .+|+|+|+.++.++...++   .|++||+.+++........      ++.. .........
T Consensus       224 ~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~------~~~~-~~~~~~~~~  296 (388)
T 3pe7_A          224 DGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMP------ACSH-LMSNYDGSL  296 (388)
T ss_dssp             TSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEEC------CEEE-EEECTTSSE
T ss_pred             CCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCC------Ccee-eeecCCCCe
Confidence            2 11222222221 1    6899999987654443222   3999999988743222210      1100 000011123


Q ss_pred             EecCCCCCCceEEEEe---------ecCCcEEEEEccCCCCceEeeecCCc-----------ceEEEEEeCCCCeEEEec
Q 021291          212 AYLPSKSQGFVNVLAG---------YEDGSILVWDIRNPGIPLTAMKVHLE-----------PVLCLSIDESCNGGISGG  271 (314)
Q Consensus       212 ~~~p~~~~g~~~l~~g---------~~dg~i~vwd~~~~~~~~~~~~~h~~-----------~v~~~~~~~~~~~l~s~s  271 (314)
                       |+|+   |+ .|+..         ..+..|++||+.+ ++ +..+..|..           .+..++|+|+|+.|+..+
T Consensus       297 -~spd---g~-~l~~~~~~~~~~~~~~~~~i~~~d~~~-~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s  369 (388)
T 3pe7_A          297 -MVGD---GS-DAPVDVQDDSGYKIENDPFLYVFNMKN-GT-QHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTS  369 (388)
T ss_dssp             -EEEE---EC-CC------------CCCCEEEEEETTT-TE-EEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEE
T ss_pred             -EccC---CC-cceeEeeeccccccCCCCEEEEEeccC-Cc-eEEeccccCcccccccccccCCCCccCCCCCCEEEEEe
Confidence             8998   44 34432         4567899999986 44 455666655           578899999998876555


Q ss_pred             -CCCcEEEEecCC
Q 021291          272 -ADQKIVLYNLDH  283 (314)
Q Consensus       272 -~dg~i~iw~~~~  283 (314)
                       .+|...+|.++-
T Consensus       370 ~~~g~~~l~~~~l  382 (388)
T 3pe7_A          370 DVHGKPALYLATL  382 (388)
T ss_dssp             CTTSSCEEEEEEC
T ss_pred             cCCCceeEEEEEC
Confidence             577777776543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.70  E-value=1.6e-14  Score=115.85  Aligned_cols=245  Identities=9%  Similarity=-0.032  Sum_probs=154.7

Q ss_pred             CCCceEEecCCCCceeEEEEccCCC-EEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC
Q 021291            7 PPDPVAVLRGHRASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD   85 (314)
Q Consensus         7 ~~~~~~~l~~h~~~v~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (314)
                      ++..+..+..+.....+++|+|+|+ +++++..++.|..||..++  ...+..+.  ..+.++++++  +++++++...+
T Consensus        16 ~~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~--~~~~~l~~~~--dg~l~v~~~~~   89 (296)
T 3e5z_A           16 AGAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPS--HHQNGHCLNK--QGHLIACSHGL   89 (296)
T ss_dssp             TTCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSC--SSEEEEEECT--TCCEEEEETTT
T ss_pred             CCCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCC--CCcceeeECC--CCcEEEEecCC
Confidence            4455677777788889999999998 7888899999999998876  55666555  4489999999  98887777777


Q ss_pred             CeEEEEeCCCCCCCCCCeeeeecce----eeEEEeeeeecccccc---c-----------cCCCCcceeeccCCceeeec
Q 021291           86 GTVKCWDIENGGLSSNPSLTIKTNS----YHFCKLSLVKEPYANA---K-----------QANEPKDCYEREVGETVDTD  147 (314)
Q Consensus        86 g~v~iwd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~---~-----------~~~~~~~~~~~~~~~~~~~~  147 (314)
                      +.|.+||..+++...  ........    .....+...+......   .           .......++.+.........
T Consensus        90 ~~i~~~d~~~g~~~~--~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~  167 (296)
T 3e5z_A           90 RRLERQREPGGEWES--IADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAP  167 (296)
T ss_dssp             TEEEEECSTTCCEEE--EECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEE
T ss_pred             CeEEEEcCCCCcEEE--EeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCCEEEe
Confidence            899999998776421  11111110    1112222211111100   0           00112355555443222221


Q ss_pred             CCCCCC---ceeccCCCceEEEeecCcCeEEEEecC-CCce---eeeecccccCCCCCcCCCCCceeeeEEEecCCCCCC
Q 021291          148 SLCDSK---DDVPAEGPKYMAVAGEQLSEVEIWDLN-TAER---CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQG  220 (314)
Q Consensus       148 ~~~~~~---~~~~~~~~~~~~~~g~~d~~i~vwd~~-~~~~---~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g  220 (314)
                      ......   ++|+|+++.+ + +.+.++.|.+||+. +++.   ...+.        .+    ...+..++ ++++   |
T Consensus       168 ~~~~~~~~gi~~s~dg~~l-v-~~~~~~~i~~~~~~~~g~~~~~~~~~~--------~~----~~~p~~i~-~d~~---G  229 (296)
T 3e5z_A          168 IRDRVKPNGLAFLPSGNLL-V-SDTGDNATHRYCLNARGETEYQGVHFT--------VE----PGKTDGLR-VDAG---G  229 (296)
T ss_dssp             ECCCSSEEEEEECTTSCEE-E-EETTTTEEEEEEECSSSCEEEEEEEEC--------CS----SSCCCSEE-EBTT---S
T ss_pred             ecCCCCCccEEECCCCCEE-E-EeCCCCeEEEEEECCCCcCcCCCeEee--------CC----CCCCCeEE-ECCC---C
Confidence            111111   8999999866 4 56667899999987 4443   22221        11    22344565 8887   6


Q ss_pred             ceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEE-eCCCCeEEEecCCCcEEEEecCCC
Q 021291          221 FVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSI-DESCNGGISGGADQKIVLYNLDHS  284 (314)
Q Consensus       221 ~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~s~s~dg~i~iw~~~~~  284 (314)
                      + +.++.  ++.|.+||..  ++.+..+..+.. +++++| +++++.|+.++.++ +.-++..+.
T Consensus       230 ~-l~v~~--~~~v~~~~~~--g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~  287 (296)
T 3e5z_A          230 L-IWASA--GDGVHVLTPD--GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVR  287 (296)
T ss_dssp             C-EEEEE--TTEEEEECTT--SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCC
T ss_pred             C-EEEEc--CCeEEEECCC--CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcccc
Confidence            5 44444  7899999986  677778887777 999999 58888888877664 444455444

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.70  E-value=2.9e-15  Score=122.73  Aligned_cols=214  Identities=9%  Similarity=0.019  Sum_probs=134.3

Q ss_pred             CCceEEecCCC-CceeEEEEccCCCEE-EEecCCCeEEEEeCCCCeEEEEEeccCC----cccEEEEEEcccCCCCeEEE
Q 021291            8 PDPVAVLRGHR-ASVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHSA----AHGIVSVATGPSIGLNKVIS   81 (314)
Q Consensus         8 ~~~~~~l~~h~-~~v~~~~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~s   81 (314)
                      ++.++.+..+. ..+..++|+|+|+++ +++..++.|.+||+.+++.+..+.....    ...+..++|+|  ++++|++
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~  108 (349)
T 1jmx_B           31 DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP--DGKEVYA  108 (349)
T ss_dssp             TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT--TSSEEEE
T ss_pred             CcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECC--CCCEEEE
Confidence            45566666443 257899999999865 5666789999999999988877764321    12378899999  9999998


Q ss_pred             eecC------------CeEEEEeCCCCCCCCCCeeeeec-ceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecC
Q 021291           82 QGRD------------GTVKCWDIENGGLSSNPSLTIKT-NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDS  148 (314)
Q Consensus        82 ~~~d------------g~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (314)
                      ++.+            +.|.+||+.+++.... ...... .......+++.+.    ....+....+++....+......
T Consensus       109 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~s~dg~----l~~~~~~i~~~d~~~~~~~~~~~  183 (349)
T 1jmx_B          109 TVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP-VRTFPMPRQVYLMRAADDGS----LYVAGPDIYKMDVKTGKYTVALP  183 (349)
T ss_dssp             EEEEEEECSSCEEECCCEEEEEEGGGGGGBCC-SEEEECCSSCCCEEECTTSC----EEEESSSEEEECTTTCCEEEEEC
T ss_pred             EcccccccccccccCCCeEEEEECCCccccce-eeeccCCCcccceeECCCCc----EEEccCcEEEEeCCCCceecccc
Confidence            8865            8999999988543321 111111 1112222333222    11112223444443333221110


Q ss_pred             CCC-------------------------------------------------------------------C-C---ceec
Q 021291          149 LCD-------------------------------------------------------------------S-K---DDVP  157 (314)
Q Consensus       149 ~~~-------------------------------------------------------------------~-~---~~~~  157 (314)
                      .+.                                                                   . .   ++++
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  263 (349)
T 1jmx_B          184 LRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRS  263 (349)
T ss_dssp             STTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEEC
T ss_pred             ccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEec
Confidence            000                                                                   0 1   4567


Q ss_pred             c-CCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEE
Q 021291          158 A-EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW  236 (314)
Q Consensus       158 ~-~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vw  236 (314)
                      | +++.+++ +   ++.|.+||+.+++.+..+..       +      ..+..+. |+|+   |+ +|++++.++.|++|
T Consensus       264 p~dg~~l~~-~---~~~v~~~d~~~~~~~~~~~~-------~------~~~~~~~-~s~d---g~-~l~~~~~~~~v~v~  321 (349)
T 1jmx_B          264 PKDPNQIYG-V---LNRLAKYDLKQRKLIKAANL-------D------HTYYCVA-FDKK---GD-KLYLGGTFNDLAVF  321 (349)
T ss_dssp             SSCTTEEEE-E---ESEEEEEETTTTEEEEEEEC-------S------SCCCEEE-ECSS---SS-CEEEESBSSEEEEE
T ss_pred             CCCCCEEEE-E---cCeEEEEECccCeEEEEEcC-------C------CCccceE-ECCC---CC-EEEEecCCCeEEEE
Confidence            8 8876654 3   68999999999988777662       1      1345666 9998   44 56667888999999


Q ss_pred             EccCCCCceEeeecC
Q 021291          237 DIRNPGIPLTAMKVH  251 (314)
Q Consensus       237 d~~~~~~~~~~~~~h  251 (314)
                      |..+ ++.+..+...
T Consensus       322 d~~~-~~~~~~~~~~  335 (349)
T 1jmx_B          322 NPDT-LEKVKNIKLP  335 (349)
T ss_dssp             ETTT-TEEEEEEECS
T ss_pred             eccc-cceeeeeecC
Confidence            9987 7777666543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.67  E-value=3.9e-13  Score=109.52  Aligned_cols=210  Identities=9%  Similarity=0.064  Sum_probs=138.2

Q ss_pred             CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC---
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD---   85 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---   85 (314)
                      +....+.++...+.+++|+++|++++++..++.|.+||.++++.......+.  ..+.+++++|  +++++++...+   
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~i~~~~--dg~l~v~~~~~~~~  110 (333)
T 2dg1_A           35 EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHK--ANPAAIKIHK--DGRLFVCYLGDFKS  110 (333)
T ss_dssp             EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSS--SSEEEEEECT--TSCEEEEECTTSSS
T ss_pred             ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCC--CCcceEEECC--CCcEEEEeCCCCCC
Confidence            3455677777888999999999988889999999999998877665443444  4499999999  88877777666   


Q ss_pred             -CeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceE
Q 021291           86 -GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM  164 (314)
Q Consensus        86 -g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (314)
                       +.|.+||..++....  .+..........  .                                    ++++|+|. ++
T Consensus       111 ~~~i~~~d~~~~~~~~--~~~~~~~~~~~~--~------------------------------------i~~d~~g~-l~  149 (333)
T 2dg1_A          111 TGGIFAATENGDNLQD--IIEDLSTAYCID--D------------------------------------MVFDSKGG-FY  149 (333)
T ss_dssp             CCEEEEECTTSCSCEE--EECSSSSCCCEE--E------------------------------------EEECTTSC-EE
T ss_pred             CceEEEEeCCCCEEEE--EEccCccCCccc--c------------------------------------eEECCCCC-EE
Confidence             689999998765321  100000000000  0                                    45788885 34


Q ss_pred             EEeecC------cCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEc
Q 021291          165 AVAGEQ------LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI  238 (314)
Q Consensus       165 ~~~g~~------d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~  238 (314)
                      + +...      .+.|..+|..+++......         .    ......+. |+|+   |+.++++...++.|.+||.
T Consensus       150 v-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---------~----~~~~~~i~-~~~d---g~~l~v~~~~~~~i~~~d~  211 (333)
T 2dg1_A          150 F-TDFRGYSTNPLGGVYYVSPDFRTVTPIIQ---------N----ISVANGIA-LSTD---EKVLWVTETTANRLHRIAL  211 (333)
T ss_dssp             E-EECCCBTTBCCEEEEEECTTSCCEEEEEE---------E----ESSEEEEE-ECTT---SSEEEEEEGGGTEEEEEEE
T ss_pred             E-EeccccccCCCceEEEEeCCCCEEEEeec---------C----CCcccceE-ECCC---CCEEEEEeCCCCeEEEEEe
Confidence            3 2321      2567777766544332222         1    11345666 9998   5534455566889999999


Q ss_pred             cCCCCceEee--------ecCCcceEEEEEeCCCCeEEEecCCCcEEEEecC
Q 021291          239 RNPGIPLTAM--------KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD  282 (314)
Q Consensus       239 ~~~~~~~~~~--------~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~  282 (314)
                      +..+..+..+        .++ ..+..++++++|+++++...++.|.+||.+
T Consensus       212 ~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~  262 (333)
T 2dg1_A          212 EDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR  262 (333)
T ss_dssp             CTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             cCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence            6423333221        122 467889999999988877778899999985

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.67  E-value=4.3e-14  Score=126.97  Aligned_cols=226  Identities=8%  Similarity=0.040  Sum_probs=142.3

Q ss_pred             CCCceeEEEEccCCCEEEEecCCC-----eEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCe----
Q 021291           17 HRASVTDVCFHQTKPILFAGTTGG-----ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT----   87 (314)
Q Consensus        17 h~~~v~~~~~~~~~~~l~s~~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~----   87 (314)
                      |...+..++|||||++||.++.++     .|++||+.+++.+.....+   ..+..++|+|  |++.|+.++.++.    
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~---~~~~~~~wsp--Dg~~l~~~~~~~~~~~~  197 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER---VKFSCMAWTH--DGKGMFYNAYPQQDGKS  197 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE---ECSCCEEECT--TSSEEEEEECCCCSSCC
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC---cccceEEEEe--CCCEEEEEEECCccccc
Confidence            445688999999999998765533     8999999999877643222   1267899999  9999998887765    


Q ss_pred             ------------EEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCce
Q 021291           88 ------------VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDD  155 (314)
Q Consensus        88 ------------v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (314)
                                  |++|++.++......++..........  .                                    .+
T Consensus       198 ~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~--~------------------------------------~~  239 (710)
T 2xdw_A          198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMG--G------------------------------------AE  239 (710)
T ss_dssp             SSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEE--E------------------------------------EE
T ss_pred             cccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEE--E------------------------------------EE
Confidence                        999998876532100111110010000  0                                    56


Q ss_pred             eccCCCceEEEeecC---cCeEEEEecCC------Cc-eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEE
Q 021291          156 VPAEGPKYMAVAGEQ---LSEVEIWDLNT------AE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL  225 (314)
Q Consensus       156 ~~~~~~~~~~~~g~~---d~~i~vwd~~~------~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~  225 (314)
                      |+|+|+.+++.+...   +..|++||+.+      +. ....+.        .+..    .... . |+|+   |..+++
T Consensus       240 ~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~--------~~~~----~~~~-~-~s~d---g~~l~~  302 (710)
T 2xdw_A          240 LSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLI--------DNFE----GEYD-Y-VTNE---GTVFTF  302 (710)
T ss_dssp             ECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEE--------CSSS----SCEE-E-EEEE---TTEEEE
T ss_pred             EcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEee--------CCCC----cEEE-E-Eecc---CCEEEE
Confidence            999999877654321   56899999976      43 344444        2322    1111 2 7777   442444


Q ss_pred             EeecC---CcEEEEEccCCCC-ceEeeecCCc--ceEEEEEeCCCCeEEEecCCCc--EEEEecCCCeeeEe-------e
Q 021291          226 AGYED---GSILVWDIRNPGI-PLTAMKVHLE--PVLCLSIDESCNGGISGGADQK--IVLYNLDHSTYVLF-------G  290 (314)
Q Consensus       226 ~g~~d---g~i~vwd~~~~~~-~~~~~~~h~~--~v~~~~~~~~~~~l~s~s~dg~--i~iw~~~~~~~~~~-------~  290 (314)
                      .+..+   +.|.+||+.++.. ....+..|..  .+..++|++++.++++...|+.  |.+|++.+++.+..       .
T Consensus       303 ~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v  382 (710)
T 2xdw_A          303 KTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSV  382 (710)
T ss_dssp             EECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEE
T ss_pred             EECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceE
Confidence            44333   4699999987321 2355555544  6888999988888888888885  56667756654332       2


Q ss_pred             eeeeecCCCcee
Q 021291          291 IGFVCDQEGNKF  302 (314)
Q Consensus       291 ~~~~~~~~~~~~  302 (314)
                      .+++.++++..+
T Consensus       383 ~~~~~s~d~~~l  394 (710)
T 2xdw_A          383 VGYSGQKKDTEI  394 (710)
T ss_dssp             EEEECCTTCSEE
T ss_pred             EEEecCCCCCEE
Confidence            345556666433

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.65  E-value=1e-13  Score=114.59  Aligned_cols=193  Identities=7%  Similarity=0.025  Sum_probs=119.1

Q ss_pred             EEEEecCC--CeEEEEeC--CCCeEEEEEecc-CCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCC-CCCCCCCCeee
Q 021291           32 ILFAGTTG--GELRIWDT--VQHRTVSSSWVH-SAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE-NGGLSSNPSLT  105 (314)
Q Consensus        32 ~l~s~~~d--g~v~iwd~--~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~-~~~~~~~~~~~  105 (314)
                      +|+.|+..  +.|.+|++  .+++....-... .....+..++|+|  ++++|++++.+ .|.+||+. ++++..  ...
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~sp--dg~~l~~~~~~-~v~~~~~~~~g~~~~--~~~   78 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDH--ERKNIYGAAMK-KWSSFAVKSPTEIVH--EAS   78 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECT--TSSEEEEEEBT-EEEEEEEEETTEEEE--EEE
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECC--CCCEEEEEccc-eEEEEEECCCCCEEE--eeE
Confidence            35556553  56887765  456543221110 1112478999999  99999999888 99999997 554211  000


Q ss_pred             eecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeec-------------CcC
Q 021291          106 IKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE-------------QLS  172 (314)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-------------~d~  172 (314)
                      .....      .+..                                 ++|+|+|+.++++++.             .++
T Consensus        79 ~~~~g------~~~~---------------------------------~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g  119 (365)
T 1jof_A           79 HPIGG------HPRA---------------------------------NDADTNTRAIFLLAAKQPPYAVYANPFYKFAG  119 (365)
T ss_dssp             EECCS------SGGG---------------------------------GCTTSCCEEEEEEECSSTTCCEEEEEESSSCC
T ss_pred             eecCC------CCcc---------------------------------EEECCCCCEEEEEEecCCcceeccceeecCCc
Confidence            00000      0000                                 5689999864433332             578


Q ss_pred             eEEEEecC-CCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEee-cCCcEEEEEcc-CCCCce--Ee
Q 021291          173 EVEIWDLN-TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-EDGSILVWDIR-NPGIPL--TA  247 (314)
Q Consensus       173 ~i~vwd~~-~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~-~dg~i~vwd~~-~~~~~~--~~  247 (314)
                      .+.+|++. +++....+...      .+  .....+..+. |+|+   |+ +++++. .++.|++||+. + ++..  ..
T Consensus       120 ~v~v~~~~~~g~~~~~~~~~------~~--~~~~~~~~~~-~spd---G~-~l~~~~~~~~~v~~~~~~~~-g~~~~~~~  185 (365)
T 1jof_A          120 YGNVFSVSETGKLEKNVQNY------EY--QENTGIHGMV-FDPT---ET-YLYSADLTANKLWTHRKLAS-GEVELVGS  185 (365)
T ss_dssp             EEEEEEECTTCCEEEEEEEE------EC--CTTCCEEEEE-ECTT---SS-EEEEEETTTTEEEEEEECTT-SCEEEEEE
T ss_pred             eEEEEccCCCCcCcceEeeE------Ee--CCCCcceEEE-ECCC---CC-EEEEEcCCCCEEEEEEECCC-CCEEEeee
Confidence            99999997 45544333210      01  0123566776 9998   65 555544 46899999998 5 4432  33


Q ss_pred             ee--cCCcceEEEEEeCCCCeEEEecC-CCcEEEEecC
Q 021291          248 MK--VHLEPVLCLSIDESCNGGISGGA-DQKIVLYNLD  282 (314)
Q Consensus       248 ~~--~h~~~v~~~~~~~~~~~l~s~s~-dg~i~iw~~~  282 (314)
                      +.  .|...+..++|+|+|++|++++. ++.|.+|+++
T Consensus       186 ~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~  223 (365)
T 1jof_A          186 VDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             EECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             EecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEe
Confidence            33  24567899999999998877664 7899999876

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.65  E-value=2e-13  Score=108.03  Aligned_cols=214  Identities=13%  Similarity=0.095  Sum_probs=149.9

Q ss_pred             CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeec
Q 021291           29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKT  108 (314)
Q Consensus        29 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~  108 (314)
                      .+++|++++.|+.|.+||.++++.+..+..+.. ..+.++.+.|  +|++|+  +.++.|..||. +++.++    .+..
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~-~~~~~~~~~p--dG~ilv--s~~~~V~~~d~-~G~~~W----~~~~   73 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKG-WECNSVAATK--AGEILF--SYSKGAKMITR-DGRELW----NIAA   73 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTT-CCCCEEEECT--TSCEEE--ECBSEEEEECT-TSCEEE----EEEC
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCcc-CCCcCeEECC--CCCEEE--eCCCCEEEECC-CCCEEE----EEcC
Confidence            467899999999999999989999999987642 2378999999  988888  44778999999 776544    3332


Q ss_pred             ce-eeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceeee
Q 021291          109 NS-YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTR  187 (314)
Q Consensus       109 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~  187 (314)
                      .. ....  +                                    ..+.++|+.+++.++ .++.|..+|. +++.+..
T Consensus        74 ~~~~~~~--~------------------------------------~~~~~dG~~lv~~~~-~~~~v~~vd~-~Gk~l~~  113 (276)
T 3no2_A           74 PAGCEMQ--T------------------------------------ARILPDGNALVAWCG-HPSTILEVNM-KGEVLSK  113 (276)
T ss_dssp             CTTCEEE--E------------------------------------EEECTTSCEEEEEES-TTEEEEEECT-TSCEEEE
T ss_pred             CCCcccc--c------------------------------------cEECCCCCEEEEecC-CCCEEEEEeC-CCCEEEE
Confidence            10 0000  0                                    346788876554222 2577888886 6777766


Q ss_pred             ecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeE
Q 021291          188 LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGG  267 (314)
Q Consensus       188 ~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l  267 (314)
                      +...... ...|     .....+. +.++   |. ++++...++.|..||..  ++.+.++... ..+.++...+++..+
T Consensus       114 ~~~~~~~-~~~~-----~~~~~v~-~~~~---G~-~lv~~~~~~~v~~~d~~--G~~~w~~~~~-~~~~~~~~~~~g~~~  179 (276)
T 3no2_A          114 TEFETGI-ERPH-----AQFRQIN-KNKK---GN-YLVPLFATSEVREIAPN--GQLLNSVKLS-GTPFSSAFLDNGDCL  179 (276)
T ss_dssp             EEECCSC-SSGG-----GSCSCCE-ECTT---SC-EEEEETTTTEEEEECTT--SCEEEEEECS-SCCCEEEECTTSCEE
T ss_pred             EeccCCC-Cccc-----ccccCce-ECCC---CC-EEEEecCCCEEEEECCC--CCEEEEEECC-CCccceeEcCCCCEE
Confidence            6531100 0011     1122233 6666   55 88999999999999986  7888888764 455677888999999


Q ss_pred             EEecCCCcEEEEecCCCeeeEeee-------------eeeecCCCceeceee
Q 021291          268 ISGGADQKIVLYNLDHSTYVLFGI-------------GFVCDQEGNKFGTTW  306 (314)
Q Consensus       268 ~s~s~dg~i~iw~~~~~~~~~~~~-------------~~~~~~~~~~~~~~w  306 (314)
                      ++++.++.|..+|.++++.++...             +....++|..+...|
T Consensus       180 v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          180 VACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             EECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             EEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence            999888899999999999887642             233457788887775

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.64  E-value=1.6e-13  Score=111.72  Aligned_cols=219  Identities=12%  Similarity=0.089  Sum_probs=141.4

Q ss_pred             CCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCe-EEEEEec-------cCCcccEEEEEEcccCCCCeEEEee-cCC
Q 021291           16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-TVSSSWV-------HSAAHGIVSVATGPSIGLNKVISQG-RDG   86 (314)
Q Consensus        16 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~-------~~~~~~v~~~~~~~~~~~~~l~s~~-~dg   86 (314)
                      ++-.....++++++|+++++...++.|++||..... .+..+..       .........|+++|. ++.++++.+ .++
T Consensus        88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~-~g~lyv~d~~~~~  166 (329)
T 3fvz_A           88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPS-TGAVFVSDGYCNS  166 (329)
T ss_dssp             TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTT-TCCEEEEECSSCC
T ss_pred             CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCC-CCeEEEEeCCCCC
Confidence            344578899999999999999999999999976432 4555521       111134889999982 345566665 589


Q ss_pred             eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEE
Q 021291           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV  166 (314)
Q Consensus        87 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (314)
                      .|++||. +++...    .+......          .      ...       ..     .+.....++++|++..+++ 
T Consensus       167 ~I~~~~~-~g~~~~----~~~~~g~~----------~------~~~-------~~-----~~~~p~gia~d~~~g~l~v-  212 (329)
T 3fvz_A          167 RIVQFSP-SGKFVT----QWGEESSG----------S------SPR-------PG-----QFSVPHSLALVPHLDQLCV-  212 (329)
T ss_dssp             EEEEECT-TSCEEE----EECEECCS----------S------SCC-------TT-----EESCEEEEEEETTTTEEEE-
T ss_pred             eEEEEcC-CCCEEE----EeccCCCC----------C------CCC-------Cc-----ccCCCcEEEEECCCCEEEE-
Confidence            9999994 343211    11100000          0      000       00     0000000678898556665 


Q ss_pred             eecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCC----CCceEEEEeecCCcEEEEEccCCC
Q 021291          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKS----QGFVNVLAGYEDGSILVWDIRNPG  242 (314)
Q Consensus       167 ~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~----~g~~~l~~g~~dg~i~vwd~~~~~  242 (314)
                      +...++.|++||..+++.+..+...      .+    ...+..+. |+|. -    +|. ..++...+..|++||..+ +
T Consensus       213 ~d~~~~~I~~~~~~~G~~~~~~~~~------~~----~~~~~~~~-~~pg-~~~~~~g~-~~v~~~~~~~v~~~~~~~-g  278 (329)
T 3fvz_A          213 ADRENGRIQCFKTDTKEFVREIKHA------SF----GRNVFAIS-YIPG-FLFAVNGK-PYFGDQEPVQGFVMNFSS-G  278 (329)
T ss_dssp             EETTTTEEEEEETTTCCEEEEECCT------TT----TTCEEEEE-EETT-EEEEEECC-CCTTCSCCCCEEEEETTT-C
T ss_pred             EECCCCEEEEEECCCCcEEEEEecc------cc----CCCcceee-ecCC-EEEEeCCC-EEeccCCCcEEEEEEcCC-C
Confidence            5566789999999988888777521      12    23456676 8871 0    021 222333456899999988 7


Q ss_pred             CceEeee---cCCcceEEEEEeCCCCeEEEecCCCcEEEEecCC
Q 021291          243 IPLTAMK---VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH  283 (314)
Q Consensus       243 ~~~~~~~---~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~  283 (314)
                      +.+..+.   ++...+..|+++++|.++++...++.|++|+++.
T Consensus       279 ~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          279 EIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             CEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             eEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence            7777773   5667899999999998889999999999999864

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.64  E-value=2.4e-14  Score=127.61  Aligned_cols=214  Identities=9%  Similarity=-0.045  Sum_probs=137.2

Q ss_pred             eEEecCCCCceeEEEEccCCCEEEEe--cCCCeEEEEeCCCCeEEEEEeccCCcccEE---------EEEEc--ccCCCC
Q 021291           11 VAVLRGHRASVTDVCFHQTKPILFAG--TTGGELRIWDTVQHRTVSSSWVHSAAHGIV---------SVATG--PSIGLN   77 (314)
Q Consensus        11 ~~~l~~h~~~v~~~~~~~~~~~l~s~--~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~~   77 (314)
                      ...+.+|...|..++|++++-++++.  +.++...||....+.....+..+...  +.         ...|+  |  |++
T Consensus        16 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~SP--Dg~   91 (662)
T 3azo_A           16 AALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWN--VRNRVFEYSGFPWAGVPRP--AGG   91 (662)
T ss_dssp             HHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCC--BCCCGGGTCCCCEEEECCS--SSS
T ss_pred             HHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCcc--ccccccccCCccceeeeec--CCC
Confidence            44577899999999999887677777  66889999986544555556555432  44         55565  8  888


Q ss_pred             e-EEEeec-CCeEEEEeCC--C-CCCCCCCeeeeecce---eeEEEeeeeeccccccccCCCCcceeeccCCceeeecCC
Q 021291           78 K-VISQGR-DGTVKCWDIE--N-GGLSSNPSLTIKTNS---YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSL  149 (314)
Q Consensus        78 ~-l~s~~~-dg~v~iwd~~--~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (314)
                      . |+.++. +..|.+|++.  . ++..     .+....   .......                                
T Consensus        92 ~~la~~~~~~~~l~~~~~~~~g~~~~~-----~l~~~~~~~~~~~~~~--------------------------------  134 (662)
T 3azo_A           92 PLLVFTHFGDQRLYAFEPDAPGGAVPR-----PLTPVSAVGGGLRWAD--------------------------------  134 (662)
T ss_dssp             CEEEEEBTTTCCEEEECTTSTTCCCCE-----ECSCCCCSTTCEEEEE--------------------------------
T ss_pred             eEEEEEECCCCeEEEEcCCCCCCCCCE-----eccCCccCCCCccccC--------------------------------
Confidence            8 665543 5667777765  2 3311     111100   0000000                                


Q ss_pred             CCCCceeccCCCceEEEeecC--------cCeEEEEecCC------CceeeeecccccCCCCCcCCCCCceeeeEEEecC
Q 021291          150 CDSKDDVPAEGPKYMAVAGEQ--------LSEVEIWDLNT------AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLP  215 (314)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~g~~--------d~~i~vwd~~~------~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p  215 (314)
                          ++|+|||+.++.++...        ...|++||+.+      ++.......       +     ...+..+. |+|
T Consensus       135 ----~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~-------~-----~~~~~~~~-~Sp  197 (662)
T 3azo_A          135 ----PVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDD-------A-----HRFVTGPR-LSP  197 (662)
T ss_dssp             ----EEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCS-------C-----SSEECCCE-ECT
T ss_pred             ----cEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEec-------C-----CCcccCce-ECC
Confidence                56999998776543210        15899999987      554322201       1     23555666 999


Q ss_pred             CCCCCceEEEEeecC--------CcEEEEEccCCC---CceEeeecCCcceEEEEEeCCCCeEEEecCCC--cEEEEecC
Q 021291          216 SKSQGFVNVLAGYED--------GSILVWDIRNPG---IPLTAMKVHLEPVLCLSIDESCNGGISGGADQ--KIVLYNLD  282 (314)
Q Consensus       216 ~~~~g~~~l~~g~~d--------g~i~vwd~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg--~i~iw~~~  282 (314)
                      |   |+ +|+.++.+        ..|++||+...+   +......+|...+..+.|+|+|+++++++.++  .|.+||++
T Consensus       198 D---G~-~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~  273 (662)
T 3azo_A          198 D---GR-QAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPA  273 (662)
T ss_dssp             T---SS-EEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTT
T ss_pred             C---CC-EEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECC
Confidence            8   65 67666544        379999998314   44444455678999999999999888888888  56666665


Q ss_pred             CCee
Q 021291          283 HSTY  286 (314)
Q Consensus       283 ~~~~  286 (314)
                      +++.
T Consensus       274 ~~~~  277 (662)
T 3azo_A          274 TGAA  277 (662)
T ss_dssp             TCCE
T ss_pred             CCce
Confidence            5543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.64  E-value=1.1e-12  Score=113.72  Aligned_cols=254  Identities=11%  Similarity=0.012  Sum_probs=155.2

Q ss_pred             CCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCC--CCeEEEEEeccCCcccEEEEEEc----ccCCCCeEEE
Q 021291            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTV--QHRTVSSSWVHSAAHGIVSVATG----PSIGLNKVIS   81 (314)
Q Consensus         8 ~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~--~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~l~s   81 (314)
                      .+.+.++.. ...+..+.|+|||+++++++.|+.|.+||+.  +++.+..+....   ....++|+    |  +|+++++
T Consensus       187 ~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~---~P~~ia~s~~~~p--DGk~l~v  260 (567)
T 1qks_A          187 YEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS---EARSIETSKMEGW--EDKYAIA  260 (567)
T ss_dssp             CCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS---EEEEEEECCSTTC--TTTEEEE
T ss_pred             CeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC---CCceeEEccccCC--CCCEEEE
Confidence            345555553 2356789999999999999999999999995  788888776543   25799999    7  8888887


Q ss_pred             eec-CCeEEEEeCCCCCCCCCCeeeeecce-------------eeEEEeeeeeccccccccCCCCcceeeccCCceeee-
Q 021291           82 QGR-DGTVKCWDIENGGLSSNPSLTIKTNS-------------YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDT-  146 (314)
Q Consensus        82 ~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  146 (314)
                      ++. +++|.++|..+.+.+.    .+....             ......+.............+....++......... 
T Consensus       261 ~n~~~~~v~ViD~~t~~~~~----~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~  336 (567)
T 1qks_A          261 GAYWPPQYVIMDGETLEPKK----IQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTT  336 (567)
T ss_dssp             EEEETTEEEEEETTTCCEEE----EEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEE
T ss_pred             EEccCCeEEEEECCCCcEEE----EEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceee
Confidence            665 6999999998876543    222111             011111111111111112223333334333221111 


Q ss_pred             cC--CCCCC-ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceE
Q 021291          147 DS--LCDSK-DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVN  223 (314)
Q Consensus       147 ~~--~~~~~-~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~  223 (314)
                      ..  ..+.. ..|+|+++++++++. .++.|.++|+.+++.+..+...   ....|..  .+.  . - ++|+.  +. +
T Consensus       337 ~i~~~~~~~d~~~~pdgr~~~va~~-~sn~V~ViD~~t~kl~~~i~vg---g~~Phpg--~g~--~-~-~~p~~--g~-v  403 (567)
T 1qks_A          337 EISAERFLHDGGLDGSHRYFITAAN-ARNKLVVIDTKEGKLVAIEDTG---GQTPHPG--RGA--N-F-VHPTF--GP-V  403 (567)
T ss_dssp             EEECCSSEEEEEECTTSCEEEEEEG-GGTEEEEEETTTTEEEEEEECS---SSSBCCT--TCE--E-E-EETTT--EE-E
T ss_pred             eeeccccccCceECCCCCEEEEEeC-CCCeEEEEECCCCcEEEEEecc---CcCCCCc--cce--e-e-ECCCC--Cc-E
Confidence            11  11111 789999998877544 4689999999999877666520   0012211  122  1 1 56751  33 4


Q ss_pred             EEEee-cCCcEEEEEccCC------CCceEeeecCCcceEEEEEeCCCCeEEEecC-------CCcEEEEecCCC
Q 021291          224 VLAGY-EDGSILVWDIRNP------GIPLTAMKVHLEPVLCLSIDESCNGGISGGA-------DQKIVLYNLDHS  284 (314)
Q Consensus       224 l~~g~-~dg~i~vwd~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-------dg~i~iw~~~~~  284 (314)
                      .+++. .++.|.++|....      .+.++++......-..+..+|++++|.....       .+.|.++|+.+.
T Consensus       404 ~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~  478 (567)
T 1qks_A          404 WATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM  478 (567)
T ss_dssp             EEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred             EEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence            55554 4689999998852      2456777654443345678999998877552       458999999877

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.63  E-value=9.7e-13  Score=107.00  Aligned_cols=254  Identities=6%  Similarity=-0.130  Sum_probs=154.6

Q ss_pred             CceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCC
Q 021291           19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL   98 (314)
Q Consensus        19 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~   98 (314)
                      .....+++. +++++++...++.|.+||..+++.+.++...   .....+++++  ++..+++...++.|.+||..+++.
T Consensus        44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~---~~p~~i~~~~--~g~lyv~~~~~~~v~~iD~~t~~~  117 (328)
T 3dsm_A           44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGF---TSPRYIHFLS--DEKAYVTQIWDYRIFIINPKTYEI  117 (328)
T ss_dssp             SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECC---SSEEEEEEEE--TTEEEEEEBSCSEEEEEETTTTEE
T ss_pred             ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCC---CCCcEEEEeC--CCeEEEEECCCCeEEEEECCCCeE
Confidence            345677774 4556666667899999999999998888543   3478999998  875444444799999999998865


Q ss_pred             CCCCeeeeec------ceeeEEEeeeeecccccccc-CCCCcceeeccCCceeeecCCCC-C-CceeccCCCceEEEeec
Q 021291           99 SSNPSLTIKT------NSYHFCKLSLVKEPYANAKQ-ANEPKDCYEREVGETVDTDSLCD-S-KDDVPAEGPKYMAVAGE  169 (314)
Q Consensus        99 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~g~  169 (314)
                      ..  .+....      .+.. ..+  .......... ......+++....+.......+. . .++++|+|+ +++++..
T Consensus       118 ~~--~i~~g~~~~~~~~p~~-i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~-l~v~~~~  191 (328)
T 3dsm_A          118 TG--YIECPDMDMESGSTEQ-MVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNK-MWTITDG  191 (328)
T ss_dssp             EE--EEECTTCCTTTCBCCC-EEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSE-EEEEBCC
T ss_pred             EE--EEEcCCccccCCCcce-EEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCC-EEEEECC
Confidence            33  122111      1111 111  1111111111 23445556666555433322222 1 288999986 4443322


Q ss_pred             C---------cCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccC
Q 021291          170 Q---------LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (314)
Q Consensus       170 ~---------d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~  240 (314)
                      .         .+.|.++|..+++....+..+           .......++ |+|+   ++ .++++..  .|.+||..+
T Consensus       192 ~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~-----------~g~~p~~la-~~~d---~~-~lyv~~~--~v~~~d~~t  253 (328)
T 3dsm_A          192 GYEGSPYGYEAPSLYRIDAETFTVEKQFKFK-----------LGDWPSEVQ-LNGT---RD-TLYWINN--DIWRMPVEA  253 (328)
T ss_dssp             BCTTCSSCBCCCEEEEEETTTTEEEEEEECC-----------TTCCCEEEE-ECTT---SC-EEEEESS--SEEEEETTC
T ss_pred             CccCCccccCCceEEEEECCCCeEEEEEecC-----------CCCCceeEE-EecC---CC-EEEEEcc--EEEEEECCC
Confidence            1         278999999998877666521           012456676 9997   44 5555543  899999987


Q ss_pred             CCCceE--eeecCCcceEEEEEeC-CCCeEEEe----cCCCcEEEEecCCCeeeEeeeeeeecCCCceecee
Q 021291          241 PGIPLT--AMKVHLEPVLCLSIDE-SCNGGISG----GADQKIVLYNLDHSTYVLFGIGFVCDQEGNKFGTT  305 (314)
Q Consensus       241 ~~~~~~--~~~~h~~~v~~~~~~~-~~~~l~s~----s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (314)
                       ++...  .+.........++++| ++.++++.    ..++.|.+||.+ ++.+..+. .-..|.+-.|-..
T Consensus       254 -~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~-~G~~P~~~~~~~~  322 (328)
T 3dsm_A          254 -DRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY-VGIIPGAFCWKLE  322 (328)
T ss_dssp             -SSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE-EEESEEEEEEECC
T ss_pred             -CceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEE-eccCcceEEEecc
Confidence             44331  1222245788999998 56666666    678999999998 77666532 2333444444333

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.62  E-value=6.6e-13  Score=115.09  Aligned_cols=207  Identities=15%  Similarity=0.007  Sum_probs=143.7

Q ss_pred             cCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCC--CCCCCCCCeee
Q 021291           28 QTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE--NGGLSSNPSLT  105 (314)
Q Consensus        28 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~--~~~~~~~~~~~  105 (314)
                      +.+.++++...++.|.++|..+++.+..+....   .+..+.|+|  |++++++++.|+.|.+||+.  +.+.+    .+
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~---~p~~v~~Sp--DGr~lyv~~~dg~V~viD~~~~t~~~v----~~  235 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY---AVHISRLSA--SGRYLFVIGRDGKVNMIDLWMKEPTTV----AE  235 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEECSS---CEEEEEECT--TSCEEEEEETTSEEEEEETTSSSCCEE----EE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC---CccceEECC--CCCEEEEEcCCCeEEEEECCCCCCcEe----EE
Confidence            455677888889999999999999998887543   367999999  99999999999999999996  54332    22


Q ss_pred             eecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceec----cCCCceEEEeecCcCeEEEEecCC
Q 021291          106 IKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVP----AEGPKYMAVAGEQLSEVEIWDLNT  181 (314)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~g~~d~~i~vwd~~~  181 (314)
                      +........                                       ++|+    |+|+++++ +...+++|.++|..+
T Consensus       236 i~~G~~P~~---------------------------------------ia~s~~~~pDGk~l~v-~n~~~~~v~ViD~~t  275 (567)
T 1qks_A          236 IKIGSEARS---------------------------------------IETSKMEGWEDKYAIA-GAYWPPQYVIMDGET  275 (567)
T ss_dssp             EECCSEEEE---------------------------------------EEECCSTTCTTTEEEE-EEEETTEEEEEETTT
T ss_pred             EecCCCCce---------------------------------------eEEccccCCCCCEEEE-EEccCCeEEEEECCC
Confidence            322211111                                       5688    69987766 455679999999999


Q ss_pred             CceeeeecccccC-CC-CCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEE
Q 021291          182 AERCTRLHQNSCG-GS-PNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLS  259 (314)
Q Consensus       182 ~~~~~~~~~~~~~-~~-~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~  259 (314)
                      .+.+..+...... .. ..|.   ...+..+. .+++   +..+++....+|.|.++|......+....-.......++.
T Consensus       276 ~~~~~~i~~~~~~~~~~~~~p---~~rva~i~-~s~~---~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~  348 (567)
T 1qks_A          276 LEPKKIQSTRGMTYDEQEYHP---EPRVAAIL-ASHY---RPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGG  348 (567)
T ss_dssp             CCEEEEEECCEECTTTCCEES---CCCEEEEE-ECSS---SSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEE
T ss_pred             CcEEEEEeccccccccccccC---CCceEEEE-EcCC---CCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCce
Confidence            9988776621000 00 0011   11345565 7776   3336777788899999998863222211122345677899


Q ss_pred             EeCCCCeEEEec-CCCcEEEEecCCCeeeEee
Q 021291          260 IDESCNGGISGG-ADQKIVLYNLDHSTYVLFG  290 (314)
Q Consensus       260 ~~~~~~~l~s~s-~dg~i~iw~~~~~~~~~~~  290 (314)
                      |++++++|++++ .++.|.++|+.+++.+..+
T Consensus       349 ~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i  380 (567)
T 1qks_A          349 LDGSHRYFITAANARNKLVVIDTKEGKLVAIE  380 (567)
T ss_dssp             ECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred             ECCCCCEEEEEeCCCCeEEEEECCCCcEEEEE
Confidence            999999876554 6789999999999876543

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.61  E-value=4.1e-14  Score=126.17  Aligned_cols=216  Identities=9%  Similarity=-0.002  Sum_probs=138.2

Q ss_pred             CceEEecC-----CCCceeEEEEccCCCEEEEecCC----------CeEEEEeCCC------CeEEEEEe-ccCCcccEE
Q 021291            9 DPVAVLRG-----HRASVTDVCFHQTKPILFAGTTG----------GELRIWDTVQ------HRTVSSSW-VHSAAHGIV   66 (314)
Q Consensus         9 ~~~~~l~~-----h~~~v~~~~~~~~~~~l~s~~~d----------g~v~iwd~~~------~~~~~~~~-~~~~~~~v~   66 (314)
                      ...+.+..     |...+..++|+|||+.|++++.|          ..|++||+.+      ++.. .+. .+.  ..+.
T Consensus       115 ~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~--~~~~  191 (662)
T 3azo_A          115 AVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAH--RFVT  191 (662)
T ss_dssp             CCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCS--SEEC
T ss_pred             CCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCC--Cccc
Confidence            34455665     67789999999999999998877          5899999987      5543 343 333  4588


Q ss_pred             EEEEcccCCCCeEEEeecCC--------eEEEEeCC-CCCCCCCCeeeeecc-eeeEEEeeeeeccccccccCCCCccee
Q 021291           67 SVATGPSIGLNKVISQGRDG--------TVKCWDIE-NGGLSSNPSLTIKTN-SYHFCKLSLVKEPYANAKQANEPKDCY  136 (314)
Q Consensus        67 ~~~~~~~~~~~~l~s~~~dg--------~v~iwd~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (314)
                      .++|+|  ||++|+.++.++        .|.+||+. ++....  ...+... ....  ..                   
T Consensus       192 ~~~~Sp--DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~--~~~l~~~~~~~~--~~-------------------  246 (662)
T 3azo_A          192 GPRLSP--DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFAD--TRTLLGGPEEAI--AQ-------------------  246 (662)
T ss_dssp             CCEECT--TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEE--EEEEEEETTBCE--EE-------------------
T ss_pred             CceECC--CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccc--cEEeCCCCCceE--cc-------------------
Confidence            899999  999999877553        79999998 452100  1111100 0000  00                   


Q ss_pred             eccCCceeeecCCCCCCceeccCCCceEEEeecCcC--eEEEEecCCCceeeeecccccCCCCCcCCCCCc-----eeee
Q 021291          137 EREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS--EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRG-----MCMA  209 (314)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~-----~~~~  209 (314)
                                       .+|+|+|+ +++ ++..++  .|.+||+.+++......        .+.. ...     .+..
T Consensus       247 -----------------~~~spdg~-l~~-~~~~~~~~~l~~~~~~~~~~~~l~~--------~~~~-~~~p~w~~~~~~  298 (662)
T 3azo_A          247 -----------------AEWAPDGS-LIV-ATDRTGWWNLHRVDPATGAATQLCR--------REEE-FAGPLWTPGMRW  298 (662)
T ss_dssp             -----------------EEECTTSC-EEE-EECTTSSCEEEEECTTTCCEEESSC--------CSSB-SSCCCCSTTCCS
T ss_pred             -----------------eEECCCCe-EEE-EECCCCCeEEEEEECCCCceeeccc--------cccc-ccCccccccCce
Confidence                             56999998 554 455567  67777776666443332        1111 100     0234


Q ss_pred             EEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEE-EEeCCCCeEEEecCCCc--EEEEecCCCee
Q 021291          210 VQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCL-SIDESCNGGISGGADQK--IVLYNLDHSTY  286 (314)
Q Consensus       210 ~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~-~~~~~~~~l~s~s~dg~--i~iw~~~~~~~  286 (314)
                      +. |+|+   ++ +++++.. +.++||.++..+..+..+..|...+..+ +++++..++++++.+..  |.+||+.+++.
T Consensus       299 ~~-~~~~---~~-~~~~~~~-~~~~l~~~d~~~~~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~  372 (662)
T 3azo_A          299 FA-PLAN---GL-IAVVHGK-GAAVLGILDPESGELVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRA  372 (662)
T ss_dssp             EE-ECTT---SC-EEEEEBS-SSCEEEEEETTTTEEEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             Ee-EeCC---CE-EEEEEEc-CccEEEEEECCCCcEEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCce
Confidence            55 8876   55 7888888 9999995543234477788888888888 77766655666666654  55556666654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.59  E-value=3.7e-14  Score=127.04  Aligned_cols=249  Identities=10%  Similarity=-0.012  Sum_probs=150.4

Q ss_pred             CCCCceeEEEEccCCCEEE-----EecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCe---
Q 021291           16 GHRASVTDVCFHQTKPILF-----AGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT---   87 (314)
Q Consensus        16 ~h~~~v~~~~~~~~~~~l~-----s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~---   87 (314)
                      +|...+..++|||||++||     .|+.+..|++||+.+++.+.  ..+........++|+|  |++.|+.++.|..   
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wsp--Dg~~l~~~~~d~~~~~  193 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTP--DSKGFYYEWLPTDPSI  193 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECT--TSSEEEEEECCCCTTS
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEec--CCCEEEEEEecCCCCC
Confidence            4666789999999999998     56667899999999987641  1111111126899999  9999999988776   


Q ss_pred             ----------EEEEeCCCCCCCCCCeeeeecc--eeeEEEeeeeeccccccccCC-CCcceeeccCCc-eeeecCCCCCC
Q 021291           88 ----------VKCWDIENGGLSSNPSLTIKTN--SYHFCKLSLVKEPYANAKQAN-EPKDCYEREVGE-TVDTDSLCDSK  153 (314)
Q Consensus        88 ----------v~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~  153 (314)
                                |++|++.++......++.....  ......+++.+.......... ....++.+.... ...........
T Consensus       194 ~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~  273 (695)
T 2bkl_A          194 KVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGA  273 (695)
T ss_dssp             CGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSC
T ss_pred             ccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCc
Confidence                      9999999876322112222221  223344454443333333222 223344332211 11111111111


Q ss_pred             ---ceeccCCCceEEEeec--CcCeEEEEecCCCce--eeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEE
Q 021291          154 ---DDVPAEGPKYMAVAGE--QLSEVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA  226 (314)
Q Consensus       154 ---~~~~~~~~~~~~~~g~--~d~~i~vwd~~~~~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~  226 (314)
                         ..+ ++|. +++.+..  .++.|.+||+.+++.  ...+.        .+.  ....+..+. |+ +   +. ++++
T Consensus       274 ~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~--------~~~--~~~~l~~~~-~~-~---~~-lv~~  335 (695)
T 2bkl_A          274 KYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIV--------PED--SSASLLSVS-IV-G---GH-LSLE  335 (695)
T ss_dssp             CEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEE--------CCC--SSCEEEEEE-EE-T---TE-EEEE
T ss_pred             eEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEe--------cCC--CCCeEEEEE-EE-C---CE-EEEE
Confidence               333 6777 6654331  258899999987653  23333        121  122455555 65 2   44 7888


Q ss_pred             eecCCcEEEEEccCCCCceEeeecC-CcceEEEEEeCCCCeEE----EecCCCcEEEEecCCCee
Q 021291          227 GYEDGSILVWDIRNPGIPLTAMKVH-LEPVLCLSIDESCNGGI----SGGADQKIVLYNLDHSTY  286 (314)
Q Consensus       227 g~~dg~i~vwd~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~----s~s~dg~i~iw~~~~~~~  286 (314)
                      ...|+..+||.++..+.....+..+ ...|..+++++++..|+    +....+.|++||+.+++.
T Consensus       336 ~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          336 YLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             EEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             EEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            8999998888776325556666655 56778888899887776    444467899999988764

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.59  E-value=1.3e-12  Score=103.07  Aligned_cols=237  Identities=8%  Similarity=-0.042  Sum_probs=139.7

Q ss_pred             ceeEEEEccCCCEEE-EecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCC
Q 021291           20 SVTDVCFHQTKPILF-AGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL   98 (314)
Q Consensus        20 ~v~~~~~~~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~   98 (314)
                      ...+++++++|++++ +.+.++.|.+||..+...........  ..+.++++.+  +++++++.. ++.|.+||......
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~p~~i~~~~--~g~l~v~~~-~~~i~~~d~~~~~~   99 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGL--YQPQGLAVDG--AGTVYVTDF-NNRVVTLAAGSNNQ   99 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSC--CSCCCEEECT--TCCEEEEET-TTEEEEECTTCSCC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCc--CCcceeEECC--CCCEEEEcC-CCEEEEEeCCCceE
Confidence            678999999998777 55788999999976544322111221  3478999999  877666655 88999999876543


Q ss_pred             CCCCeeeeec-ceeeEEEeeeeeccccccc-cCCCCcceeeccCCceeeecCCC--C-CCceeccCCCceEEEeecCcCe
Q 021291           99 SSNPSLTIKT-NSYHFCKLSLVKEPYANAK-QANEPKDCYEREVGETVDTDSLC--D-SKDDVPAEGPKYMAVAGEQLSE  173 (314)
Q Consensus        99 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~g~~d~~  173 (314)
                      ..   +.... .......+...+  ..... ........++.............  . ..++++++|+ +++ +...++.
T Consensus       100 ~~---~~~~~~~~p~~i~~~~~g--~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v-~~~~~~~  172 (270)
T 1rwi_B          100 TV---LPFDGLNYPEGLAVDTQG--AVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-VYV-TDTDNNR  172 (270)
T ss_dssp             EE---CCCCSCSSEEEEEECTTC--CEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCC-EEE-EEGGGTE
T ss_pred             ee---eecCCcCCCcceEECCCC--CEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCC-EEE-EECCCCE
Confidence            11   11111 111122222111  11111 11112222222211111111111  1 1288999886 544 4444689


Q ss_pred             EEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCc
Q 021291          174 VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE  253 (314)
Q Consensus       174 i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~  253 (314)
                      |.+||...........        .+    ......++ ++|+   |. ++++...++.|.+||... .........+..
T Consensus       173 i~~~~~~~~~~~~~~~--------~~----~~~p~~i~-~d~~---g~-l~v~~~~~~~v~~~~~~~-~~~~~~~~~~~~  234 (270)
T 1rwi_B          173 VVKLEAESNNQVVLPF--------TD----ITAPWGIA-VDEA---GT-VYVTEHNTNQVVKLLAGS-TTSTVLPFTGLN  234 (270)
T ss_dssp             EEEECTTTCCEEECCC--------SS----CCSEEEEE-ECTT---CC-EEEEETTTSCEEEECTTC-SCCEECCCCSCS
T ss_pred             EEEEecCCCceEeecc--------cC----CCCceEEE-ECCC---CC-EEEEECCCCcEEEEcCCC-CcceeeccCCCC
Confidence            9999988665433221        11    13466776 8887   54 677777788999999875 333222223345


Q ss_pred             ceEEEEEeCCCCeEEEecCCCcEEEEecCCCee
Q 021291          254 PVLCLSIDESCNGGISGGADQKIVLYNLDHSTY  286 (314)
Q Consensus       254 ~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~  286 (314)
                      .+.+++++++|+++++...++.|+++++...+.
T Consensus       235 ~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          235 TPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred             CceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence            789999999999889999999999999887654

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.59  E-value=1.5e-12  Score=106.62  Aligned_cols=225  Identities=13%  Similarity=0.036  Sum_probs=137.7

Q ss_pred             CceeEEEEccCCCEEEEecCC---C--eEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC--------
Q 021291           19 ASVTDVCFHQTKPILFAGTTG---G--ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD--------   85 (314)
Q Consensus        19 ~~v~~~~~~~~~~~l~s~~~d---g--~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d--------   85 (314)
                      ..+..++|+|||++|+.++.+   +  .|.+|++.+++.......+   . +..++|+|  +++.|+.++.+        
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~---~-~~~~~wsp--dg~~l~~~~~~~~~~~~~~  132 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK---N-IRSLEWNE--DSRKLLIVGFKRREDEDFI  132 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES---E-EEEEEECT--TSSEEEEEEECCCC-----
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC---C-ccceeECC--CCCEEEEEEccCCCcCCcE
Confidence            457889999999999887654   3  4888898888766554433   3 89999999  99988877642        


Q ss_pred             -------------------CeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCC------C-Ccceeecc
Q 021291           86 -------------------GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN------E-PKDCYERE  139 (314)
Q Consensus        86 -------------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~  139 (314)
                                         ..|.+||+.+++...  .+...  ......+++.+  ........      . ...++.+.
T Consensus       133 ~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~--~l~~~--~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d  206 (347)
T 2gop_A          133 FEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIE--EFEKP--RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWE  206 (347)
T ss_dssp             ----CCCC---------CEEEEEEEETTTTEEEE--EEEEE--TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEE
T ss_pred             EEcccceeecCcccccCccceEEEEECCCCeEEe--eecCC--CcccccCCCCe--EEEEEecccccccccccccEEEeC
Confidence                               579999998876411  12221  22233344333  11111111      1 23444444


Q ss_pred             CCceeeecCCCCCCceeccCCCceEEEeecC------cCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeee-EEE
Q 021291          140 VGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ------LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMA-VQA  212 (314)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~------d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~-~~~  212 (314)
                       ...............++|+|+.+++.+...      ...|.+||  +++......        ++    ...+.. +. 
T Consensus       207 -~~~~~~l~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~--------~~----~~~~~~~~~-  270 (347)
T 2gop_A          207 -DGKEEKMFEKVSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILD--------EV----DRGVGQAKI-  270 (347)
T ss_dssp             -TTEEEEEEEEESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESST--------TC----CSEEEEEEE-
T ss_pred             -CCceEEeccCcceeeECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccc--------cC----CcccCCccE-
Confidence             222221111111144599998876544221      24788888  454332222        22    234554 55 


Q ss_pred             ecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcE-EEEecC
Q 021291          213 YLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKI-VLYNLD  282 (314)
Q Consensus       213 ~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i-~iw~~~  282 (314)
                      |+ +   +  ++++++.++.++|| +.+ ++. ..+..+...|.+++|++  .++++++.++.. .+|.++
T Consensus       271 ~s-d---g--~~~~~~~~~~~~l~-~~~-g~~-~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          271 KD-G---K--VYFTLFEEGSVNLY-IWD-GEI-KPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             ET-T---E--EEEEEEETTEEEEE-EES-SSE-EEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred             Ec-C---c--EEEEEecCCcEEEE-EcC-Cce-EEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence            87 5   4  78888899999999 884 655 34445577899999999  567777766654 778776

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.58  E-value=2.5e-12  Score=101.72  Aligned_cols=219  Identities=12%  Similarity=0.009  Sum_probs=149.8

Q ss_pred             CCCCceEEecCCC-CceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeec
Q 021291            6 PPPDPVAVLRGHR-ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (314)
Q Consensus         6 ~~~~~~~~l~~h~-~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (314)
                      ..++.+..+..+. ..+.+++++|+|++|+  +.++.|..||. +++.+..+..+.. ..+.++.+.+  +++.+++.+.
T Consensus        23 ~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~-~~~~~~~~~~--dG~~lv~~~~   96 (276)
T 3no2_A           23 DTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAG-CEMQTARILP--DGNALVAWCG   96 (276)
T ss_dssp             TTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTT-CEEEEEEECT--TSCEEEEEES
T ss_pred             CCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCC-ccccccEECC--CCCEEEEecC
Confidence            3567888888776 5789999999999888  34778999998 8999999887532 3488999999  9999998887


Q ss_pred             -CCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCce
Q 021291           85 -DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY  163 (314)
Q Consensus        85 -dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (314)
                       ++.|..+|. +++.++    ..........                                .......+++.++|+.+
T Consensus        97 ~~~~v~~vd~-~Gk~l~----~~~~~~~~~~--------------------------------~~~~~~~v~~~~~G~~l  139 (276)
T 3no2_A           97 HPSTILEVNM-KGEVLS----KTEFETGIER--------------------------------PHAQFRQINKNKKGNYL  139 (276)
T ss_dssp             TTEEEEEECT-TSCEEE----EEEECCSCSS--------------------------------GGGSCSCCEECTTSCEE
T ss_pred             CCCEEEEEeC-CCCEEE----EEeccCCCCc--------------------------------ccccccCceECCCCCEE
Confidence             778888876 454332    1111000000                                00000014567888754


Q ss_pred             EEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCC
Q 021291          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI  243 (314)
Q Consensus       164 ~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~  243 (314)
                      +  +...++.|..||.. ++.+.++..        .     ....++. ..++   |. +++++..++.|..+|..+ ++
T Consensus       140 v--~~~~~~~v~~~d~~-G~~~w~~~~--------~-----~~~~~~~-~~~~---g~-~~v~~~~~~~v~~~d~~t-G~  197 (276)
T 3no2_A          140 V--PLFATSEVREIAPN-GQLLNSVKL--------S-----GTPFSSA-FLDN---GD-CLVACGDAHCFVQLNLES-NR  197 (276)
T ss_dssp             E--EETTTTEEEEECTT-SCEEEEEEC--------S-----SCCCEEE-ECTT---SC-EEEECBTTSEEEEECTTT-CC
T ss_pred             E--EecCCCEEEEECCC-CCEEEEEEC--------C-----CCcccee-EcCC---CC-EEEEeCCCCeEEEEeCcC-Cc
Confidence            4  45668999999998 998888873        1     1233444 6666   55 788888888999999998 88


Q ss_pred             ceEeeecCC------cceEEEEEeCCCCeEEEecC--C------CcEEEEec-CCCeeeEe
Q 021291          244 PLTAMKVHL------EPVLCLSIDESCNGGISGGA--D------QKIVLYNL-DHSTYVLF  289 (314)
Q Consensus       244 ~~~~~~~h~------~~v~~~~~~~~~~~l~s~s~--d------g~i~iw~~-~~~~~~~~  289 (314)
                      .+.++..+.      ..+..+...++|..+++...  .      +..+++++ .+++.++.
T Consensus       198 ~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~  258 (276)
T 3no2_A          198 IVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQ  258 (276)
T ss_dssp             EEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEE
T ss_pred             EEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEE
Confidence            888876432      23788888999998877632  1      23456666 45555554

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.57  E-value=7.1e-13  Score=110.46  Aligned_cols=234  Identities=11%  Similarity=-0.070  Sum_probs=135.5

Q ss_pred             eEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEE-------------------EEEcccCCCCeEEEe
Q 021291           22 TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVS-------------------VATGPSIGLNKVISQ   82 (314)
Q Consensus        22 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~~~l~s~   82 (314)
                      ..+.|+|||++|+.++.++.|++||+.+++.......+..  ....                   +.|+|  +++.++.+
T Consensus        84 ~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~--~~~~g~~l~~~~~~~~~~~~~~~~~~sp--dg~~~~~~  159 (396)
T 3c5m_A           84 FGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEE--WKGYGTWVANSDCTKLVGIEILKRDWQP--LTSWEKFA  159 (396)
T ss_dssp             TTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT--EEEEEEEEECTTSSEEEEEEEEGGGCCC--CCSHHHHH
T ss_pred             ccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccc--cCCCCCEEEeccCCccccccccccccCC--CCcceeee
Confidence            3488999999999999999999999998877665554432  1222                   34566  76766644


Q ss_pred             -----ecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeee-eeccccccccCC-----CCcceeeccCCceeeecCCCC
Q 021291           83 -----GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSL-VKEPYANAKQAN-----EPKDCYEREVGETVDTDSLCD  151 (314)
Q Consensus        83 -----~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  151 (314)
                           ..+..|.+||+.+++...  +. ..........+++ ............     .....+++.... ........
T Consensus       160 ~~~~~~~~~~l~~~d~~~g~~~~--~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~  235 (396)
T 3c5m_A          160 EFYHTNPTCRLIKVDIETGELEV--IH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN-VRKIKEHA  235 (396)
T ss_dssp             HHHHTCCCEEEEEEETTTCCEEE--EE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC-CEESSCCC
T ss_pred             eeccCCCcceEEEEECCCCcEEe--ec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc-eeEeeccC
Confidence                 356789999998876422  21 1222223334444 222222221111     123333333322 11122211


Q ss_pred             CC-----ceeccCCCceEEEeecC---cCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecC-CCCCCce
Q 021291          152 SK-----DDVPAEGPKYMAVAGEQ---LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLP-SKSQGFV  222 (314)
Q Consensus       152 ~~-----~~~~~~~~~~~~~~g~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p-~~~~g~~  222 (314)
                      ..     ++|+|+|+.+++++...   ++.|++||+.+++.......             .. .. +. |+| +   |+ 
T Consensus       236 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-------------~~-~~-~~-~s~~d---g~-  295 (396)
T 3c5m_A          236 EGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-------------PP-CS-HL-MSNFD---GS-  295 (396)
T ss_dssp             TTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-------------CS-EE-EE-EECSS---SS-
T ss_pred             CCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC-------------CC-CC-CC-ccCCC---Cc-
Confidence            12     68999998776543221   14599999988765432221             11 11 44 998 7   55 


Q ss_pred             EEEEee----------------cCCcEEEEEccCCCCceEeeecCCc-----------ceEEEEEeCCCCeEEEecC-CC
Q 021291          223 NVLAGY----------------EDGSILVWDIRNPGIPLTAMKVHLE-----------PVLCLSIDESCNGGISGGA-DQ  274 (314)
Q Consensus       223 ~l~~g~----------------~dg~i~vwd~~~~~~~~~~~~~h~~-----------~v~~~~~~~~~~~l~s~s~-dg  274 (314)
                      +++.++                .+..|++||+.+ ++. ..+..+..           .+..++|+|+|+.|+..+. ++
T Consensus       296 ~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~-~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~  373 (396)
T 3c5m_A          296 LMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA-KSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEG  373 (396)
T ss_dssp             EEEEEECCC----------CCCCCCEEEEEETTT-TBC-CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTS
T ss_pred             eEEEecCCcceeeccccccccCCCCcEEEEeccc-Cce-EEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCC
Confidence            565543                347899999986 443 34555544           2567899999998876654 55


Q ss_pred             cEEEE--ecCCCe
Q 021291          275 KIVLY--NLDHST  285 (314)
Q Consensus       275 ~i~iw--~~~~~~  285 (314)
                      ...+|  ++..++
T Consensus       374 ~~~l~~~~~~~~~  386 (396)
T 3c5m_A          374 VPAIYIADVPESY  386 (396)
T ss_dssp             SCEEEEEECCTTC
T ss_pred             CceEEEEEEcccc
Confidence            55555  444443

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.56  E-value=3.4e-12  Score=105.16  Aligned_cols=119  Identities=12%  Similarity=0.153  Sum_probs=79.9

Q ss_pred             CCCEEEEe------cCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEee----------cCCeEEEEe
Q 021291           29 TKPILFAG------TTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG----------RDGTVKCWD   92 (314)
Q Consensus        29 ~~~~l~s~------~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----------~dg~v~iwd   92 (314)
                      ++++++..      ..|+.|.+||..+++.+..+....  .+  .++|+|  +++++++++          .+++|.+||
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~--~p--~i~~sp--dg~~lyv~~~~~~~~~~g~~~~~v~v~d   87 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAF--NG--HVQVSN--DGKKIYTMTTYHERITRGKRSDVVEVWD   87 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCE--EE--EEEECT--TSSEEEEEEEEETTSSSSCEEEEEEEEE
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCC--CC--ceEECC--CCCEEEEEEecccccccCCCCCEEEEEE
Confidence            45555543      247899999999999888877653  33  899999  999999886          367899999


Q ss_pred             CCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcC
Q 021291           93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS  172 (314)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~  172 (314)
                      ..+.+.+.    ++........   ...                             .-..++++|+|++++++....++
T Consensus        88 ~~t~~~~~----~i~~~~~~~~---~g~-----------------------------~p~~i~~spdg~~l~v~n~~~~~  131 (361)
T 2oiz_A           88 ADKLTFEK----EISLPPKRVQ---GLN-----------------------------YDGLFRQTTDGKFIVLQNASPAT  131 (361)
T ss_dssp             TTTCCEEE----EEEECTTBCC---BCC-----------------------------CGGGEEECTTSSEEEEEEESSSE
T ss_pred             CcCCcEEE----EEEcCccccc---cCC-----------------------------CcceEEECCCCCEEEEECCCCCC
Confidence            98765432    2211100000   000                             00006799999988765433368


Q ss_pred             eEEEEecCCCceeee-ec
Q 021291          173 EVEIWDLNTAERCTR-LH  189 (314)
Q Consensus       173 ~i~vwd~~~~~~~~~-~~  189 (314)
                      .|.+||+.+++.+.. +.
T Consensus       132 ~v~v~d~~~~~~~~~~i~  149 (361)
T 2oiz_A          132 SIGIVDVAKGDYVEDVTA  149 (361)
T ss_dssp             EEEEEETTTTEEEEEEGG
T ss_pred             eEEEEECCCCcEEEEEec
Confidence            999999999988777 54

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.56  E-value=7.6e-12  Score=100.93  Aligned_cols=258  Identities=9%  Similarity=0.029  Sum_probs=149.7

Q ss_pred             CCCCCCCCCceEEecCCCCceeEEEEccCCCEEEE-------ecCCCeEEEEeCCCCeEEEEEe----ccCCcccEEEEE
Q 021291            1 MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFA-------GTTGGELRIWDTVQHRTVSSSW----VHSAAHGIVSVA   69 (314)
Q Consensus         1 m~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s-------~~~dg~v~iwd~~~~~~~~~~~----~~~~~~~v~~~~   69 (314)
                      |......++.. .+...-....+++|+++++++++       +..++.|.+||..+++......    ++.  ..+.+++
T Consensus         1 ~~i~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~--~~~~~i~   77 (314)
T 1pjx_A            1 MEIPVIEPLFT-KVTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYG--GIPAGCQ   77 (314)
T ss_dssp             CCSCEECCCCE-EEECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEE--CCEEEEE
T ss_pred             CccccccHhHh-hhhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCC--CCCceEE
Confidence            33433333433 33445556789999999988888       6778999999988776543221    122  3489999


Q ss_pred             EcccCC-CCeEEEeecCCeEEEEeCCCCCCCCCCe-eeee----cceeeEEEeeeeeccccccccCCC------------
Q 021291           70 TGPSIG-LNKVISQGRDGTVKCWDIENGGLSSNPS-LTIK----TNSYHFCKLSLVKEPYANAKQANE------------  131 (314)
Q Consensus        70 ~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~------------  131 (314)
                      +++  + ++++++. ..+.|.+||.. ++...  . ....    ........+...+  .........            
T Consensus        78 ~~~--~~g~l~v~~-~~~~l~~~d~~-g~~~~--~~~~~~~~~~~~~~~~i~~d~~g--~l~v~~~~~~~~~~~~~~~~~  149 (314)
T 1pjx_A           78 CDR--DANQLFVAD-MRLGLLVVQTD-GTFEE--IAKKDSEGRRMQGCNDCAFDYEG--NLWITAPAGEVAPADYTRSMQ  149 (314)
T ss_dssp             ECS--SSSEEEEEE-TTTEEEEEETT-SCEEE--CCSBCTTSCBCBCCCEEEECTTS--CEEEEECBCBCTTSCCCBTTS
T ss_pred             Eec--CCCcEEEEE-CCCCEEEEeCC-CCEEE--EEeccCCCccccCCcCEEECCCC--CEEEEecCccccccccccccc
Confidence            999  7 5555544 44579999988 54321  1 0100    0111112222111  111111110            


Q ss_pred             --CcceeeccCCceeeecCC---CCCCceec----cCCCceEEEeecCcCeEEEEecC-CCcee--eeecccccCCCCCc
Q 021291          132 --PKDCYEREVGETVDTDSL---CDSKDDVP----AEGPKYMAVAGEQLSEVEIWDLN-TAERC--TRLHQNSCGGSPNF  199 (314)
Q Consensus       132 --~~~~~~~~~~~~~~~~~~---~~~~~~~~----~~~~~~~~~~g~~d~~i~vwd~~-~~~~~--~~~~~~~~~~~~~h  199 (314)
                        ...++.+...........   ....++++    ++++.+++ +...++.|.+||+. +++..  ..+..     ..++
T Consensus       150 ~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v-~~~~~~~i~~~~~~~~g~~~~~~~~~~-----~~~~  223 (314)
T 1pjx_A          150 EKFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIV-AETPTKKLWSYDIKGPAKIENKKVWGH-----IPGT  223 (314)
T ss_dssp             SSCEEEEEECTTSCEEEEEEEESSEEEEEEEECTTSCEEEEEE-EETTTTEEEEEEEEETTEEEEEEEEEE-----CCCC
T ss_pred             CCCCeEEEECCCCCEEEeccCCCCcceEEEecccCCCCCEEEE-EECCCCeEEEEECCCCCccccceEEEE-----CCCC
Confidence              133444432221111111   11117888    88876655 44556899999986 44321  11110     0011


Q ss_pred             CCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCC-eEEEecCCCcEEE
Q 021291          200 SSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCN-GGISGGADQKIVL  278 (314)
Q Consensus       200 ~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~dg~i~i  278 (314)
                         .......+. ++++   |+ ++++...++.|.+||.++ ++.+..+..+...+.+++|++++. ++++...++.|..
T Consensus       224 ---~~~~p~~i~-~d~~---G~-l~v~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~  294 (314)
T 1pjx_A          224 ---HEGGADGMD-FDED---NN-LLVANWGSSHIEVFGPDG-GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWK  294 (314)
T ss_dssp             ---SSCEEEEEE-EBTT---CC-EEEEEETTTEEEEECTTC-BSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             ---CCCCCCceE-ECCC---CC-EEEEEcCCCEEEEEcCCC-CcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEE
Confidence               003456676 8887   55 666666788999999886 666667777778899999999998 4456666788999


Q ss_pred             EecCCC
Q 021291          279 YNLDHS  284 (314)
Q Consensus       279 w~~~~~  284 (314)
                      |+++..
T Consensus       295 ~~~~~~  300 (314)
T 1pjx_A          295 FEWQRN  300 (314)
T ss_dssp             EECSSC
T ss_pred             EeCCCC
Confidence            998754

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.56  E-value=3.8e-11  Score=99.10  Aligned_cols=260  Identities=8%  Similarity=-0.011  Sum_probs=152.1

Q ss_pred             CCceEEecCCCCceeEEEEccCCCEEEEec----------CCCeEEEEeCCCCeEEEEEecc-CC----cccEEEEEEcc
Q 021291            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGT----------TGGELRIWDTVQHRTVSSSWVH-SA----AHGIVSVATGP   72 (314)
Q Consensus         8 ~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~-~~----~~~v~~~~~~~   72 (314)
                      .+.+.++..-..+  .++++|||++|+.+.          .++.|.+||..+.+.+..+... ..    ......++|+|
T Consensus        57 ~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp  134 (373)
T 2mad_H           57 GSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP  134 (373)
T ss_pred             CeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECC
Confidence            3444555433333  899999999998875          3678999999988888776543 00    01245899999


Q ss_pred             cCCCCeEEEeec--CCeEEEEeCCCCCCCCCCeee-eecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeec--
Q 021291           73 SIGLNKVISQGR--DGTVKCWDIENGGLSSNPSLT-IKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTD--  147 (314)
Q Consensus        73 ~~~~~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  147 (314)
                        |+++|+.+..  +++|.++| .+++...    . +.....  ..+.+............+....++. ..+.....  
T Consensus       135 --DG~~l~v~n~~~~~~v~viD-~t~~~~~----~~i~~~~~--~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~  204 (373)
T 2mad_H          135 --NNADLLFFQFAAGPAVGLVV-QGGSSDD----QLLSSPTC--YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLV  204 (373)
T ss_pred             --CCCEEEEEecCCCCeEEEEE-CCCCEEe----EEcCCCce--EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEec
Confidence              9999998874  57899999 8886543    2 221111  1111111111112222333344444 33322110  


Q ss_pred             ---CCCCCC----ceeccCCCceEEEeecCcCeEEEEecCCCce--eeeecccccCCCCCcCCCCCceeeeEEEecCCCC
Q 021291          148 ---SLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKS  218 (314)
Q Consensus       148 ---~~~~~~----~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~  218 (314)
                         ..+...    ..+.+++..+++++  .++.+.+.|+.....  +..+..... ..... .........+. ++|+  
T Consensus       205 ~~~~~~~~p~~~~~~~~~~~~~~~~~~--~~~~v~vid~~~~~~~v~~~~~~~~~-~~~~~-~~~p~g~~~~~-~s~d--  277 (373)
T 2mad_H          205 GAMLTAAQNLLTQPAQANKSGRIVWPV--YSGKILQADISAAGATNKAPIDALSG-GRKAD-TWRPGGWQQVA-YLKS--  277 (373)
T ss_pred             cccccCCcceeecceeEecCCEEEEEc--CCceEEEEeccCCcceEeeeeeecCC-ccccc-ceecCceEeEE-ECCC--
Confidence               011111    34566666665544  358899999975532  222221000 00000 00011122244 8887  


Q ss_pred             CCceEEEEee----------cCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCC-eEEEec-CCCcEEEEecCCCee
Q 021291          219 QGFVNVLAGY----------EDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCN-GGISGG-ADQKIVLYNLDHSTY  286 (314)
Q Consensus       219 ~g~~~l~~g~----------~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s-~dg~i~iw~~~~~~~  286 (314)
                       +. .+++..          .++.|.++|+.+ .+.+..+.. .....+++|+++|+ +++++. .++.|.++|+.+++.
T Consensus       278 -~~-~lyV~~~~~~~~~~~~~~~~V~VID~~t-~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~v  353 (373)
T 2mad_H          278 -SD-GIYLLTSEQSAWKLHAAAKEVTSVTGLV-GQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ  353 (373)
T ss_pred             -CC-EEEEEeccCCcccccCCCCeEEEEECCC-CEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCE
Confidence             33 344332          235799999998 788888864 34689999999999 777777 589999999999998


Q ss_pred             eEee
Q 021291          287 VLFG  290 (314)
Q Consensus       287 ~~~~  290 (314)
                      +..+
T Consensus       354 v~~i  357 (373)
T 2mad_H          354 DQST  357 (373)
T ss_pred             Eeee
Confidence            7663

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.51  E-value=3.4e-11  Score=97.99  Aligned_cols=203  Identities=12%  Similarity=0.018  Sum_probs=125.6

Q ss_pred             ecCCCCceeEEEEccCCCEEEEecCC----CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeec-----
Q 021291           14 LRGHRASVTDVCFHQTKPILFAGTTG----GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-----   84 (314)
Q Consensus        14 l~~h~~~v~~~~~~~~~~~l~s~~~d----g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-----   84 (314)
                      +..+...+.+++++++|+++++...+    +.|.+||.++++....+........+.+++++|  +++++++...     
T Consensus        82 ~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~--~g~l~v~~~~~~~~~  159 (333)
T 2dg1_A           82 FVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS--KGGFYFTDFRGYSTN  159 (333)
T ss_dssp             EECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT--TSCEEEEECCCBTTB
T ss_pred             eeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECC--CCCEEEEeccccccC
Confidence            33567889999999999988877766    689999988776553443222224589999999  8887776553     


Q ss_pred             -CCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCce
Q 021291           85 -DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY  163 (314)
Q Consensus        85 -dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (314)
                       .+.|..+|..+++..     .+.....     .+..                                 ++|+|+++.+
T Consensus       160 ~~~~l~~~~~~~~~~~-----~~~~~~~-----~~~~---------------------------------i~~~~dg~~l  196 (333)
T 2dg1_A          160 PLGGVYYVSPDFRTVT-----PIIQNIS-----VANG---------------------------------IALSTDEKVL  196 (333)
T ss_dssp             CCEEEEEECTTSCCEE-----EEEEEES-----SEEE---------------------------------EEECTTSSEE
T ss_pred             CCceEEEEeCCCCEEE-----EeecCCC-----cccc---------------------------------eEECCCCCEE
Confidence             245666665544321     1100000     0000                                 5688998766


Q ss_pred             EEEeecCcCeEEEEecCC-CceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCC
Q 021291          164 MAVAGEQLSEVEIWDLNT-AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG  242 (314)
Q Consensus       164 ~~~~g~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~  242 (314)
                      ++ +.+.++.|.+||+.+ +.....+....     ............+. ++++   |+ ++++...++.|.+||..  +
T Consensus       197 ~v-~~~~~~~i~~~d~~~~g~~~~~~~~~~-----~~~~~~~~~~~~i~-~d~~---G~-l~v~~~~~~~v~~~d~~--g  263 (333)
T 2dg1_A          197 WV-TETTANRLHRIALEDDGVTIQPFGATI-----PYYFTGHEGPDSCC-IDSD---DN-LYVAMYGQGRVLVFNKR--G  263 (333)
T ss_dssp             EE-EEGGGTEEEEEEECTTSSSEEEEEEEE-----EEECCSSSEEEEEE-EBTT---CC-EEEEEETTTEEEEECTT--S
T ss_pred             EE-EeCCCCeEEEEEecCCCcCcccccceE-----EEecCCCCCCCceE-ECCC---CC-EEEEEcCCCEEEEECCC--C
Confidence            65 444568999999964 33322211000     00000012455666 8887   55 66666677899999984  5


Q ss_pred             CceEeeecCCc------ceEEEEEeCCCCeEEEecCCC
Q 021291          243 IPLTAMKVHLE------PVLCLSIDESCNGGISGGADQ  274 (314)
Q Consensus       243 ~~~~~~~~h~~------~v~~~~~~~~~~~l~s~s~dg  274 (314)
                      +.+..+..+..      .+.+++|++++..|+.++.++
T Consensus       264 ~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          264 YPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             CEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             CEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence            66666654433      689999999986666555543

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.49  E-value=1.1e-10  Score=97.54  Aligned_cols=229  Identities=12%  Similarity=-0.017  Sum_probs=146.7

Q ss_pred             CceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC--eEEEEeCCCC
Q 021291           19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG--TVKCWDIENG   96 (314)
Q Consensus        19 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg--~v~iwd~~~~   96 (314)
                      .....++|+++++++++...++.|++||..+++.........   ... ++|++  +++.|+++..++  .|.+|+...+
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~---~~~-ia~~~--~g~~l~~~d~~~~~~I~~~d~~~~  204 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK---GGK-PAVTK--DKQRVYSIGWEGTHTVYVYMKASG  204 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC---BCB-CEECT--TSSEEEEEBSSTTCEEEEEEGGGT
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC---CCc-eeEec--CCCcEEEEecCCCceEEEEEcCCC
Confidence            457889999999988888888999999998877665554432   233 99999  888888888766  7888887654


Q ss_pred             CCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEE
Q 021291           97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI  176 (314)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v  176 (314)
                      ....    .+..       ...   .                        ....-..++++|++..+++  ...++.|+.
T Consensus       205 ~~~~----~~g~-------~~~---~------------------------~~~~p~~iav~p~~g~lyv--~d~~~~I~~  244 (409)
T 3hrp_A          205 WAPT----RIGQ-------LGS---T------------------------FSGKIGAVALDETEEWLYF--VDSNKNFGR  244 (409)
T ss_dssp             TCEE----EEEE-------CCT---T------------------------SCSCCCBCEECTTSSEEEE--ECTTCEEEE
T ss_pred             ceeE----Eeee-------ccc---h------------------------hcCCcEEEEEeCCCCeEEE--EECCCcEEE
Confidence            3211    1100       000   0                        0000001678886556665  334789999


Q ss_pred             EecCCCceeeeecccccCCCCCcCCCCCceee-eEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCC---
Q 021291          177 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCM-AVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL---  252 (314)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~-~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~---  252 (314)
                      ||..++... .+...   ...++.   ..... .++ |+|++  +. ++++...++.|+.|+...  . +..+.++.   
T Consensus       245 ~d~~~~~~~-~~~~~---~~~g~~---~~~P~~~ia-~~p~~--g~-lyv~d~~~~~I~~~~~~g--~-~~~~~g~~~~~  310 (409)
T 3hrp_A          245 FNVKTQEVT-LIKQL---ELSGSL---GTNPGPYLI-YYFVD--SN-FYMSDQNLSSVYKITPDG--E-CEWFCGSATQK  310 (409)
T ss_dssp             EETTTCCEE-EEEEC---CCCSCC---CCSSCCEEE-EETTT--TE-EEEEETTTTEEEEECTTC--C-EEEEEECTTCC
T ss_pred             EECCCCCEE-EEecc---cccCCC---CCCccccEE-EeCCC--CE-EEEEeCCCCEEEEEecCC--C-EEEEEeCCCCC
Confidence            999876532 22100   000111   11112 666 99962  43 667777788999999763  3 33443332   


Q ss_pred             ------------cceEEEEEeCCCCeEEEec-CCCcEEEEecCCCeeeE---------------------eeeeeeecCC
Q 021291          253 ------------EPVLCLSIDESCNGGISGG-ADQKIVLYNLDHSTYVL---------------------FGIGFVCDQE  298 (314)
Q Consensus       253 ------------~~v~~~~~~~~~~~l~s~s-~dg~i~iw~~~~~~~~~---------------------~~~~~~~~~~  298 (314)
                                  .....++++++|.++++-+ .++.|+.|++.+++...                     ...+++.+++
T Consensus       311 g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~  390 (409)
T 3hrp_A          311 TVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGE  390 (409)
T ss_dssp             SCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSS
T ss_pred             CcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCC
Confidence                        3478999999999888888 88999999977775432                     1344667777


Q ss_pred             Cceeceeec
Q 021291          299 GNKFGTTWH  307 (314)
Q Consensus       299 ~~~~~~~w~  307 (314)
                      |.++.+.|.
T Consensus       391 g~lyVad~~  399 (409)
T 3hrp_A          391 GGYWIAEAW  399 (409)
T ss_dssp             SEEEEEEST
T ss_pred             CCEEEEECC
Confidence            777766554

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.48  E-value=1.6e-11  Score=110.23  Aligned_cols=205  Identities=14%  Similarity=0.053  Sum_probs=134.8

Q ss_pred             eeEEEEccCCCEEEEecCCCe----------------EEEEeCCCCeE--EEEEeccCCcccEEEEEEcccCCCCeEEEe
Q 021291           21 VTDVCFHQTKPILFAGTTGGE----------------LRIWDTVQHRT--VSSSWVHSAAHGIVSVATGPSIGLNKVISQ   82 (314)
Q Consensus        21 v~~~~~~~~~~~l~s~~~dg~----------------v~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~   82 (314)
                      +..++|+|||+.|+.++.++.                |++|++.+++.  ...+....+...+..+.|+|  |+++|+.+
T Consensus       173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp--Dg~~l~~~  250 (710)
T 2xdw_A          173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD--DGRYVLLS  250 (710)
T ss_dssp             SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT--TSCEEEEE
T ss_pred             cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC--CCCEEEEE
Confidence            678999999999998888766                99999988752  23333322224478999999  99998876


Q ss_pred             ec-----CCeEEEEeCCC------CCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCC
Q 021291           83 GR-----DGTVKCWDIEN------GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCD  151 (314)
Q Consensus        83 ~~-----dg~v~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (314)
                      +.     +..|.+||+.+      +...   ...+........                                     
T Consensus       251 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~---~~~l~~~~~~~~-------------------------------------  290 (710)
T 2xdw_A          251 IREGCDPVNRLWYCDLQQESNGITGILK---WVKLIDNFEGEY-------------------------------------  290 (710)
T ss_dssp             EECSSSSCCEEEEEEGGGSSSSSCSSCC---CEEEECSSSSCE-------------------------------------
T ss_pred             EEccCCCccEEEEEECcccccccCCccc---eEEeeCCCCcEE-------------------------------------
Confidence            65     56899999976      3210   111111100000                                     


Q ss_pred             CCceeccCCCceEEEeec--CcCeEEEEecCCCce--eeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEe
Q 021291          152 SKDDVPAEGPKYMAVAGE--QLSEVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG  227 (314)
Q Consensus       152 ~~~~~~~~~~~~~~~~g~--~d~~i~vwd~~~~~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g  227 (314)
                        ..|+++|+.+++.+..  .++.|.+||+.++..  ...+.        .|..  ...+..+. |+++   +. ++++.
T Consensus       291 --~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~--------~~~~--~~~~~~~~-~~~~---~~-lv~~~  353 (710)
T 2xdw_A          291 --DYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLV--------PEHE--KDVLEWVA-CVRS---NF-LVLCY  353 (710)
T ss_dssp             --EEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE--------CCCS--SCEEEEEE-EETT---TE-EEEEE
T ss_pred             --EEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceecc--------CCCC--CCeEEEEE-EEcC---CE-EEEEE
Confidence              2377888877765432  134799999987642  23343        2211  12455666 7754   44 78888


Q ss_pred             ecCCc--EEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEE-E---ecCCCcEEEEecCCCe
Q 021291          228 YEDGS--ILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGI-S---GGADQKIVLYNLDHST  285 (314)
Q Consensus       228 ~~dg~--i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s---~s~dg~i~iw~~~~~~  285 (314)
                      ..++.  |++||+.+ ++.+..+..+...|..+.+++++..|+ +   ....+.|+.||+.+++
T Consensus       354 ~~~g~~~l~~~~~~~-g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          354 LHDVKNTLQLHDLAT-GALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EETTEEEEEEEETTT-CCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EECCEEEEEEEECCC-CCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            88885  55667655 667777887777889999999887654 2   2245789999998876

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.48  E-value=3.7e-12  Score=114.94  Aligned_cols=86  Identities=9%  Similarity=-0.028  Sum_probs=66.3

Q ss_pred             CCCceEEecCCCCce-----eEEEEccCCCEEEEecCC---------CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcc
Q 021291            7 PPDPVAVLRGHRASV-----TDVCFHQTKPILFAGTTG---------GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGP   72 (314)
Q Consensus         7 ~~~~~~~l~~h~~~v-----~~~~~~~~~~~l~s~~~d---------g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~   72 (314)
                      .++....+.+|....     ..++|||||++|+.++.+         +.+.+||+.+++.. .+..+.  ..+...+|||
T Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~--~~~~~~~~SP  121 (740)
T 4a5s_A           45 YGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIP--NNTQWVTWSP  121 (740)
T ss_dssp             TCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCC--TTEEEEEECS
T ss_pred             CCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCC--CcceeeEECC
Confidence            345566677776432     347899999999998876         56779999998754 344454  4599999999


Q ss_pred             cCCCCeEEEeecCCeEEEEeCCCCCC
Q 021291           73 SIGLNKVISQGRDGTVKCWDIENGGL   98 (314)
Q Consensus        73 ~~~~~~l~s~~~dg~v~iwd~~~~~~   98 (314)
                        ||+.|+.+. |+.|++||+.+++.
T Consensus       122 --dG~~la~~~-~~~i~~~~~~~~~~  144 (740)
T 4a5s_A          122 --VGHKLAYVW-NNDIYVKIEPNLPS  144 (740)
T ss_dssp             --STTCEEEEE-TTEEEEESSTTSCC
T ss_pred             --CCCEEEEEE-CCeEEEEECCCCce
Confidence              999999885 68999999988764

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.46  E-value=1.1e-11  Score=111.87  Aligned_cols=247  Identities=11%  Similarity=0.016  Sum_probs=145.6

Q ss_pred             CCCceeEEEEccCCCEEEEecCC-----CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCe----
Q 021291           17 HRASVTDVCFHQTKPILFAGTTG-----GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT----   87 (314)
Q Consensus        17 h~~~v~~~~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~----   87 (314)
                      |...+..++|||||++||.++.+     ..|++||+.+++.+... .+.  ..+..++|+|  | +.|+.++.++.    
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~--~~~~~~~wsp--D-~~l~~~~~~~~~~~~  234 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKW--VKFSGLAWLG--N-DALLYSRFAEPKEGQ  234 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEE--EESCCCEEST--T-SEEEEEECCCC----
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCC--ceeccEEEEC--C-CEEEEEEecCccccc
Confidence            44468899999999999876543     46999999998876531 121  1135789999  9 88888776654    


Q ss_pred             ----------EEEEeCCCCCCCCCCeeeeecc--eeeEEEeeeeeccccccccC----CCCcceeeccCCcee-eecCCC
Q 021291           88 ----------VKCWDIENGGLSSNPSLTIKTN--SYHFCKLSLVKEPYANAKQA----NEPKDCYEREVGETV-DTDSLC  150 (314)
Q Consensus        88 ----------v~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~  150 (314)
                                |++|++.++......++.....  ......+++.+.........    .....++++...... ...+..
T Consensus       235 ~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~  314 (741)
T 1yr2_A          235 AFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIP  314 (741)
T ss_dssp             ----CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEEC
T ss_pred             ccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecC
Confidence                      8999998765322112222221  12233344444333322222    123344455443111 111212


Q ss_pred             CC-C--ceeccCCCceEEEeec--CcCeEEEEecCCCc-eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEE
Q 021291          151 DS-K--DDVPAEGPKYMAVAGE--QLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNV  224 (314)
Q Consensus       151 ~~-~--~~~~~~~~~~~~~~g~--~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l  224 (314)
                      +. .  ..++|+|+.+++.+..  .++.|.+||+.++. ....+..       .+    ...+..+. +. +   +. ++
T Consensus       315 ~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~-------~~----~~~l~~~~-~~-~---~~-lv  377 (741)
T 1yr2_A          315 DLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVP-------ES----KDNLESVG-IA-G---NR-LF  377 (741)
T ss_dssp             SSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEEC-------CC----SSEEEEEE-EE-B---TE-EE
T ss_pred             CCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEec-------CC----CCeEEEEE-EE-C---CE-EE
Confidence            22 2  3345888887765432  24569999998752 3333331       22    22344444 54 2   33 78


Q ss_pred             EEeecCCcEEEEEccCCCCceEeeec-CCcceEEEEEeCCCCeEE----EecCCCcEEEEecCCCee
Q 021291          225 LAGYEDGSILVWDIRNPGIPLTAMKV-HLEPVLCLSIDESCNGGI----SGGADQKIVLYNLDHSTY  286 (314)
Q Consensus       225 ~~g~~dg~i~vwd~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~----s~s~dg~i~iw~~~~~~~  286 (314)
                      ++...|+..+||.++..+.....+.. +...|..+.+++++..|+    +....+.|++||+.+++.
T Consensus       378 ~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~  444 (741)
T 1yr2_A          378 ASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT  444 (741)
T ss_dssp             EEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred             EEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            88888998888766532555666654 356788899999887665    334468899999988763

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.46  E-value=6.7e-11  Score=96.73  Aligned_cols=259  Identities=8%  Similarity=0.020  Sum_probs=148.9

Q ss_pred             CceEEecCCCCceeEEEEccCCCEEEEec----------CCCeEEEEeCCCCeEEEEEeccCC-----cccEEEEEEccc
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKPILFAGT----------TGGELRIWDTVQHRTVSSSWVHSA-----AHGIVSVATGPS   73 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~~~-----~~~v~~~~~~~~   73 (314)
                      +.+.++..-..+  .++++|||++|+.+.          .++.|.+||..+.+.+..+....+     ......++|+| 
T Consensus        70 ~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp-  146 (386)
T 3sjl_D           70 RVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-  146 (386)
T ss_dssp             EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-
T ss_pred             eEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC-
Confidence            344444433333  499999999887765          367899999999999888864320     01246799999 


Q ss_pred             CCCCeEEEeec--CCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccC-Cceeee---c
Q 021291           74 IGLNKVISQGR--DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREV-GETVDT---D  147 (314)
Q Consensus        74 ~~~~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~  147 (314)
                       ||++++.+..  ++.|.++|+.+++.+.    ++.....  ..+.+............+....+++.. ++....   .
T Consensus       147 -DGk~lyVan~~~~~~VsVID~~t~~vv~----tI~v~g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~  219 (386)
T 3sjl_D          147 -DGKTLLFYQFSPAPAVGVVDLEGKAFKR----MLDVPDC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEV  219 (386)
T ss_dssp             -TSSEEEEEECSSSCEEEEEETTTTEEEE----EEECCSE--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCC
T ss_pred             -CCCEEEEEEcCCCCeEEEEECCCCcEEE----EEECCCc--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecce
Confidence             9999888764  6899999999987644    2222111  111122211111222233333344433 221110   1


Q ss_pred             CCCCCC-----ceec-cCCCceEEEeecCcCeEEEEecCCCce--eeeecc-cc-cCCCCCcCCCCCceeeeEEEecCCC
Q 021291          148 SLCDSK-----DDVP-AEGPKYMAVAGEQLSEVEIWDLNTAER--CTRLHQ-NS-CGGSPNFSSKGRGMCMAVQAYLPSK  217 (314)
Q Consensus       148 ~~~~~~-----~~~~-~~~~~~~~~~g~~d~~i~vwd~~~~~~--~~~~~~-~~-~~~~~~h~~~~~~~~~~~~~~~p~~  217 (314)
                      +.....     ..|. ++|+.++ ++.  +|.|++.|+.+...  ...+.. .. ... .+.   ..+....+. ++|+ 
T Consensus       220 ~~~~~~~~~~~~~~~~~dG~~~~-vs~--~g~V~v~d~~~~~~~v~~~~~~~~~~~~~-~g~---~p~g~q~~a-~~~~-  290 (386)
T 3sjl_D          220 FHPEDEFLINHPAYSQKAGRLVW-PTY--TGKIHQIDLSSGDAKFLPAVEALTEAERA-DGW---RPGGWQQVA-YHRA-  290 (386)
T ss_dssp             CSCTTSCBCSCCEEETTTTEEEE-EBT--TSEEEEEECTTSSCEECCCEESSCHHHHH-TTE---EECSSSCEE-EETT-
T ss_pred             eccccccccccceeEcCCCcEEE-EeC--CCEEEEEECCCCcceeecceecccccccc-ccc---cCCCcceee-ECCC-
Confidence            111111     3453 5664333 333  58999999976542  222210 00 000 000   001112233 7776 


Q ss_pred             CCCceEEEEeec---------CCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCC-eEEE-ecCCCcEEEEecCCCee
Q 021291          218 SQGFVNVLAGYE---------DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCN-GGIS-GGADQKIVLYNLDHSTY  286 (314)
Q Consensus       218 ~~g~~~l~~g~~---------dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s-~s~dg~i~iw~~~~~~~  286 (314)
                        ++.++++-..         .+.|.++|+.+ .+.+..+.. ...+++|+++++++ +|++ ...++.|.++|..+++.
T Consensus       291 --~~~lyV~~~~~~~~~hk~~~~~V~viD~~t-~kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~  366 (386)
T 3sjl_D          291 --LDRIYLLVDQRDEWRHKTASRFVVVLDAKT-GERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE  366 (386)
T ss_dssp             --TTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred             --CCeEEEEeccccccccCCCCCEEEEEECCC-CeEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcE
Confidence              3323333221         25799999998 888887764 34788999999996 5555 55689999999999998


Q ss_pred             eEee
Q 021291          287 VLFG  290 (314)
Q Consensus       287 ~~~~  290 (314)
                      +..+
T Consensus       367 ~~~i  370 (386)
T 3sjl_D          367 LRSV  370 (386)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            7664

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.46  E-value=3.6e-11  Score=100.04  Aligned_cols=250  Identities=8%  Similarity=-0.001  Sum_probs=149.6

Q ss_pred             EEEEccCCCEEEEec----------CCCeEEEEeCCCCeEEEEEecc-CC----cccEEEEEEcccCCCCeEEEeec--C
Q 021291           23 DVCFHQTKPILFAGT----------TGGELRIWDTVQHRTVSSSWVH-SA----AHGIVSVATGPSIGLNKVISQGR--D   85 (314)
Q Consensus        23 ~~~~~~~~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~-~~----~~~v~~~~~~~~~~~~~l~s~~~--d   85 (314)
                      .++++|||++|+.+.          .++.|.++|..+++.+..+... ..    ......+.|+|  |+++++.+..  +
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~sp--DGk~lyV~n~~~~  199 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTP--DNKNLLFYQFSPA  199 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECT--TSSEEEEEECSSS
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcC--CCCEEEEEecCCC
Confidence            799999999888775          3678999999999998887643 00    01245789999  9999998874  5


Q ss_pred             CeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeee---cCCCCC-----Cceec
Q 021291           86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDT---DSLCDS-----KDDVP  157 (314)
Q Consensus        86 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-----~~~~~  157 (314)
                      ++|.+.|+.+++.+.    ++.....  ....+............+....++....+....   .+....     ...+.
T Consensus       200 ~~VsVID~~t~kvv~----~I~v~g~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~  273 (426)
T 3c75_H          200 PAVGVVDLEGKTFDR----MLDVPDC--YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFS  273 (426)
T ss_dssp             CEEEEEETTTTEEEE----EEECCSE--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEEC
T ss_pred             CeEEEEECCCCeEEE----EEEcCCc--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeec
Confidence            799999999987644    2222111  111222211111222222333333322221110   111100     15678


Q ss_pred             cCCCceEEEeecCcCeEEEEecCCCcee--eeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEee-------
Q 021291          158 AEGPKYMAVAGEQLSEVEIWDLNTAERC--TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-------  228 (314)
Q Consensus       158 ~~~~~~~~~~g~~d~~i~vwd~~~~~~~--~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~-------  228 (314)
                      +++..+++++  ..+.|.+.|.......  ..+..... ....... .......+. ++|+   +..++++..       
T Consensus       274 ~dg~~~~~~s--~~g~V~ViD~~~~~~~v~~~~~~~~~-~~i~~g~-~p~g~~~va-~s~d---g~rlyVa~~~~~~gth  345 (426)
T 3c75_H          274 LRSGRLVWPT--YTGKIFQADLTAEGATFRAPIEALTE-AERADDW-RPGGWQQTA-YHRQ---SDRIYLLVDQRDEWKH  345 (426)
T ss_dssp             TTTCEEEEEB--TTSEEEEEEECSSCEEECCCEESSCT-TTGGGTE-EECSSSCEE-EEGG---GTEEEEEEEECCTTCT
T ss_pred             CCCCEEEEEe--CCCcEEEEeccCCceEEeeeeeeccc-ccccccc-ccCCceeeE-EcCC---CCEEEEEecccccccc
Confidence            8988877644  3589999998755422  11110000 0000000 000111244 8887   432333322       


Q ss_pred             --cCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCC-eEEEec-CCCcEEEEecCCCeeeEee
Q 021291          229 --EDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCN-GGISGG-ADQKIVLYNLDHSTYVLFG  290 (314)
Q Consensus       229 --~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s-~dg~i~iw~~~~~~~~~~~  290 (314)
                        .++.|.++|..+ .+.+..+.. ......+.|+++++ ++++.. .++.|.++|+.+++.+..+
T Consensus       346 k~~s~~VsVID~~T-~kvv~~I~v-g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          346 KAASRFVVVLNAET-GERINKIEL-GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             TSCEEEEEEEETTT-CCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             cCCCCEEEEEECCC-CeEEEEEEC-CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence              135799999998 888888864 23578999999998 777777 5899999999999988664

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.44  E-value=1.9e-11  Score=100.01  Aligned_cols=236  Identities=10%  Similarity=-0.026  Sum_probs=129.4

Q ss_pred             CCCCCCCCCceEEecCCCCceeEEEEccCCCEEEEec---------CCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEc
Q 021291            1 MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGT---------TGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATG   71 (314)
Q Consensus         1 m~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~---------~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~   71 (314)
                      |++.+.+.+.+.    ....+...++  ||++++...         .++.|.+||+.+++... +      ..+..++|+
T Consensus         1 ~~~~~~~~~~l~----~~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l------~~~~~~~~S   67 (347)
T 2gop_A            1 MSSIEWNEKTFA----KFAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I------ENATMPRIS   67 (347)
T ss_dssp             ---------CCC----CSCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E------ESCEEEEEC
T ss_pred             CCcccCCcccce----eeEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c------ccCCCeEEC
Confidence            556555444332    2345777888  888887642         36789999998876543 3      227899999


Q ss_pred             ccCCCCeEEEeecC---C--eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccC-----------------
Q 021291           72 PSIGLNKVISQGRD---G--TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA-----------------  129 (314)
Q Consensus        72 ~~~~~~~l~s~~~d---g--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------  129 (314)
                      |  ||+.|+.++.+   +  .|.+||+.+++...  +.....  .....+++.+.........                 
T Consensus        68 p--Dg~~la~~~~~~~~~~~~l~~~~~~~g~~~~--l~~~~~--~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~  141 (347)
T 2gop_A           68 P--DGKKIAFMRANEEKKVSEIWVADLETLSSKK--ILEAKN--IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWF  141 (347)
T ss_dssp             T--TSSEEEEEEEETTTTEEEEEEEETTTTEEEE--EEEESE--EEEEEECTTSSEEEEEEECCCC---------CCCC-
T ss_pred             C--CCCEEEEEEeccCCCcceEEEEECCCCceEE--EEcCCC--ccceeECCCCCEEEEEEccCCCcCCcEEEcccceee
Confidence            9  99999877654   3  48888888765322  222211  3333344333322222211                 


Q ss_pred             ---------CCCcceeeccCCce-eeecCCCCCCceeccCCCceEEEeecC--------cCeEEEEecCCCceeeeeccc
Q 021291          130 ---------NEPKDCYEREVGET-VDTDSLCDSKDDVPAEGPKYMAVAGEQ--------LSEVEIWDLNTAERCTRLHQN  191 (314)
Q Consensus       130 ---------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~--------d~~i~vwd~~~~~~~~~~~~~  191 (314)
                               ......+++..+.. ..........++|+|+|  +++++...        ...|.++|  +++ ...+.  
T Consensus       142 ~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d--~~~-~~~l~--  214 (347)
T 2gop_A          142 DDLGFFDGEKTTFWIFDTESEEVIEEFEKPRFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWE--DGK-EEKMF--  214 (347)
T ss_dssp             --------CEEEEEEEETTTTEEEEEEEEETTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEE--TTE-EEEEE--
T ss_pred             cCcccccCccceEEEEECCCCeEEeeecCCCcccccCCCCe--EEEEEecccccccccccccEEEeC--CCc-eEEec--
Confidence                     11233344544433 11111211128999999  44433221        12455555  444 33333  


Q ss_pred             ccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecC--------CcEEEEEccCCCCceEeeecCCcceEE-EEEeC
Q 021291          192 SCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED--------GSILVWDIRNPGIPLTAMKVHLEPVLC-LSIDE  262 (314)
Q Consensus       192 ~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~d--------g~i~vwd~~~~~~~~~~~~~h~~~v~~-~~~~~  262 (314)
                            .+     ....  . ++|+   |+ .|+.++.+        ..|.+||  + ++.......|...+.. +.|+ 
T Consensus       215 ------~~-----~~~~--~-~spd---g~-~l~~~~~~~~~~~~~~~~l~~~d--~-~~~~~l~~~~~~~~~~~~~~s-  272 (347)
T 2gop_A          215 ------EK-----VSFY--A-VDSD---GE-RILLYGKPEKKYMSEHNKLYIYD--G-KEVMGILDEVDRGVGQAKIKD-  272 (347)
T ss_dssp             ------EE-----ESEE--E-EEEC---SS-CEEEEECCSSSCCCSSCEEEEEC--S-SCEEESSTTCCSEEEEEEEET-
T ss_pred             ------cC-----ccee--e-ECCC---CC-EEEEEEccccCCccccceEEEEC--C-CceEeccccCCcccCCccEEc-
Confidence                  11     1121  2 5776   55 45554433        4688888  3 5555555566778886 8999 


Q ss_pred             CCCeEEEecCCCcEEEEecCCCee
Q 021291          263 SCNGGISGGADQKIVLYNLDHSTY  286 (314)
Q Consensus       263 ~~~~l~s~s~dg~i~iw~~~~~~~  286 (314)
                      ++ ++++++.++.+++| +++++.
T Consensus       273 dg-~~~~~~~~~~~~l~-~~~g~~  294 (347)
T 2gop_A          273 GK-VYFTLFEEGSVNLY-IWDGEI  294 (347)
T ss_dssp             TE-EEEEEEETTEEEEE-EESSSE
T ss_pred             Cc-EEEEEecCCcEEEE-EcCCce
Confidence            88 88999999999999 875543

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.44  E-value=2e-10  Score=91.92  Aligned_cols=231  Identities=12%  Similarity=0.100  Sum_probs=136.7

Q ss_pred             ecCCCCceeEEEEccC-CCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEe
Q 021291           14 LRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD   92 (314)
Q Consensus        14 l~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd   92 (314)
                      +..+..--.+..|+++ +.++++...++.|..||..+++. ..+.. .  ..+.++++++  +++++++ . ++.|.+||
T Consensus         8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~-~--~~~~~i~~~~--dG~l~v~-~-~~~l~~~d   79 (297)
T 3g4e_A            8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTM-D--APVSSVALRQ--SGGYVAT-I-GTKFCALN   79 (297)
T ss_dssp             ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEEC-S--SCEEEEEEBT--TSSEEEE-E-TTEEEEEE
T ss_pred             eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEeC-C--CceEEEEECC--CCCEEEE-E-CCeEEEEE
Confidence            4444455678999994 56777778889999999987765 33332 2  4489999999  8885544 4 56899999


Q ss_pred             CCCCCCCCCCeeeeecc----eeeEEEeeeeecccccccc--------CCCCcceeeccCCceeeecC---CCCCCceec
Q 021291           93 IENGGLSSNPSLTIKTN----SYHFCKLSLVKEPYANAKQ--------ANEPKDCYEREVGETVDTDS---LCDSKDDVP  157 (314)
Q Consensus        93 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  157 (314)
                      .++++...  .......    ......+...+........        ......++.+..........   .....++|+
T Consensus        80 ~~~g~~~~--~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~s  157 (297)
T 3g4e_A           80 WKEQSAVV--LATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWS  157 (297)
T ss_dssp             TTTTEEEE--EEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEEC
T ss_pred             CCCCcEEE--EEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEc
Confidence            98775321  1111111    1111222221111110000        01223455554332211111   111128999


Q ss_pred             cCCCceEEEeecCcCeEEEEec--CCCcee--eeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcE
Q 021291          158 AEGPKYMAVAGEQLSEVEIWDL--NTAERC--TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI  233 (314)
Q Consensus       158 ~~~~~~~~~~g~~d~~i~vwd~--~~~~~~--~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i  233 (314)
                      |+++.+++ +.+.++.|.+||+  .++...  ..+..        . ....+....++ ++++   |+ +.++...++.|
T Consensus       158 pdg~~lyv-~~~~~~~i~~~~~d~~~G~~~~~~~~~~--------~-~~~~~~p~g~~-~d~~---G~-lwva~~~~~~v  222 (297)
T 3g4e_A          158 LDHKIFYY-IDSLSYSVDAFDYDLQTGQISNRRSVYK--------L-EKEEQIPDGMC-IDAE---GK-LWVACYNGGRV  222 (297)
T ss_dssp             TTSCEEEE-EEGGGTEEEEEEECTTTCCEEEEEEEEE--------C-CGGGCEEEEEE-EBTT---SC-EEEEEETTTEE
T ss_pred             CCCCEEEE-ecCCCCcEEEEeccCCCCcccCcEEEEE--------C-CCCCCCCCeeE-ECCC---CC-EEEEEcCCCEE
Confidence            99987765 4555789999987  455432  11110        0 00123456666 8877   65 66666677889


Q ss_pred             EEEEccCCCCceEeeecCCcceEEEEEe-CCCCeEEEe
Q 021291          234 LVWDIRNPGIPLTAMKVHLEPVLCLSID-ESCNGGISG  270 (314)
Q Consensus       234 ~vwd~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~s~  270 (314)
                      ..||..+ ++.+..+..+...+++++|. |++..|...
T Consensus       223 ~~~d~~t-G~~~~~i~~p~~~~t~~~f~g~d~~~L~vt  259 (297)
T 3g4e_A          223 IRLDPVT-GKRLQTVKLPVDKTTSCCFGGKNYSEMYVT  259 (297)
T ss_dssp             EEECTTT-CCEEEEEECSSSBEEEEEEESGGGCEEEEE
T ss_pred             EEEcCCC-ceEEEEEECCCCCceEEEEeCCCCCEEEEE
Confidence            9999987 78888888877889999997 777655333

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.44  E-value=9.7e-11  Score=95.16  Aligned_cols=237  Identities=9%  Similarity=-0.083  Sum_probs=146.7

Q ss_pred             cCCCeEEEEeCCCCeEEEEEec----cCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeec-cee
Q 021291           37 TTGGELRIWDTVQHRTVSSSWV----HSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKT-NSY  111 (314)
Q Consensus        37 ~~dg~v~iwd~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~~  111 (314)
                      +.++.|.++|.++++....+..    ..-......+.+..   +..+++...++.|.+||..+++.+.    ++.. ...
T Consensus        14 ~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~---~~lyv~~~~~~~v~viD~~t~~~~~----~i~~~~~p   86 (328)
T 3dsm_A           14 YSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRD---GIGWIVVNNSHVIFAIDINTFKEVG----RITGFTSP   86 (328)
T ss_dssp             SCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEET---TEEEEEEGGGTEEEEEETTTCCEEE----EEECCSSE
T ss_pred             CCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEEC---CEEEEEEcCCCEEEEEECcccEEEE----EcCCCCCC
Confidence            3489999999999887654411    11112367787754   4666677778999999999987643    2221 122


Q ss_pred             eEEEeeeeecccccccc-CCCCcceeeccCCceeeecCCCC-------CC-ceeccCCCceEEEeecCcCeEEEEecCCC
Q 021291          112 HFCKLSLVKEPYANAKQ-ANEPKDCYEREVGETVDTDSLCD-------SK-DDVPAEGPKYMAVAGEQLSEVEIWDLNTA  182 (314)
Q Consensus       112 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~~~g~~d~~i~vwd~~~~  182 (314)
                      ....++...  ...... .......++............+.       .. +++  ++..++++..+.++.|.++|+.++
T Consensus        87 ~~i~~~~~g--~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~  162 (328)
T 3dsm_A           87 RYIHFLSDE--KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETD  162 (328)
T ss_dssp             EEEEEEETT--EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTT
T ss_pred             cEEEEeCCC--eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCC
Confidence            222222222  222222 34555666666655433222121       11 666  455666533224789999999999


Q ss_pred             ceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecC----------CcEEEEEccCCCCceEeeecC-
Q 021291          183 ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED----------GSILVWDIRNPGIPLTAMKVH-  251 (314)
Q Consensus       183 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~d----------g~i~vwd~~~~~~~~~~~~~h-  251 (314)
                      +....+..             ......+. ++|+   |+ +++++..+          +.|.++|..+ ++....+... 
T Consensus       163 ~~~~~i~~-------------g~~p~~i~-~~~d---G~-l~v~~~~~~~~~~~~~~~~~v~~id~~t-~~v~~~~~~~~  223 (328)
T 3dsm_A          163 KVVDELTI-------------GIQPTSLV-MDKY---NK-MWTITDGGYEGSPYGYEAPSLYRIDAET-FTVEKQFKFKL  223 (328)
T ss_dssp             EEEEEEEC-------------SSCBCCCE-ECTT---SE-EEEEBCCBCTTCSSCBCCCEEEEEETTT-TEEEEEEECCT
T ss_pred             eEEEEEEc-------------CCCccceE-EcCC---CC-EEEEECCCccCCccccCCceEEEEECCC-CeEEEEEecCC
Confidence            88777762             11234454 8887   65 55555444          7899999987 6666666532 


Q ss_pred             CcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeE---------eeeeeeecC-CCceecee
Q 021291          252 LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVL---------FGIGFVCDQ-EGNKFGTT  305 (314)
Q Consensus       252 ~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~---------~~~~~~~~~-~~~~~~~~  305 (314)
                      ......++|+|++++|..+..  .|.+||..+++...         ...+++++| ++.++.+.
T Consensus       224 g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~  285 (328)
T 3dsm_A          224 GDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVAD  285 (328)
T ss_dssp             TCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEE
T ss_pred             CCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEc
Confidence            246899999999988877654  89999998876431         245567887 66666664

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.43  E-value=4.9e-09  Score=83.60  Aligned_cols=239  Identities=4%  Similarity=-0.071  Sum_probs=141.9

Q ss_pred             ecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeC
Q 021291           14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI   93 (314)
Q Consensus        14 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~   93 (314)
                      +..+...+.+++++++|+++++...++.|.+||.. ++.. .+........+.++++.+  ++..+++...++.|..||.
T Consensus        10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~~~   85 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT-EYPLPTPDAKVMCLTISS--DGEVWFTENAANKIGRITK   85 (299)
T ss_dssp             CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEECSSTTCCEEEEEECT--TSCEEEEETTTTEEEEECT
T ss_pred             CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-EecCCcccCceeeEEECC--CCCEEEeCCCCCeEEEECC
Confidence            44566789999999999988877778899999988 5543 333221124589999999  8887777777889999998


Q ss_pred             CCCCCCCCCeeeeecceeeEEEeeeeecccccccc-CCCCcceeeccCCceeeecCCCCCC----ceeccCCCceEEEee
Q 021291           94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQ-ANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAG  168 (314)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g  168 (314)
                      . ++. .  .+...........+............ .......++. .+............    +++.++|. +++ +.
T Consensus        86 ~-g~~-~--~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v-~~  158 (299)
T 2z2n_A           86 K-GII-K--EYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNA-LWF-TE  158 (299)
T ss_dssp             T-SCE-E--EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSC-EEE-EE
T ss_pred             C-CcE-E--EEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCC-EEE-Ee
Confidence            6 321 1  11111111111111111111111111 1222233333 22222222221111    78888885 443 44


Q ss_pred             cCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceE-e
Q 021291          169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT-A  247 (314)
Q Consensus       169 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~-~  247 (314)
                      ..++.|..||. +++... +...      ..    ...+..+. ++++   |. +.++...++.|.+||. + +.... .
T Consensus       159 ~~~~~i~~~~~-~g~~~~-~~~~------~~----~~~~~~i~-~~~~---g~-l~v~~~~~~~i~~~~~-~-g~~~~~~  219 (299)
T 2z2n_A          159 NQNNAIGRITE-SGDITE-FKIP------TP----ASGPVGIT-KGND---DA-LWFVEIIGNKIGRITT-S-GEITEFK  219 (299)
T ss_dssp             TTTTEEEEECT-TCCEEE-EECS------ST----TCCEEEEE-ECTT---SS-EEEEETTTTEEEEECT-T-CCEEEEE
T ss_pred             CCCCEEEEEcC-CCcEEE-eeCC------CC----CCcceeEE-ECCC---CC-EEEEccCCceEEEECC-C-CcEEEEE
Confidence            44688999998 665433 2210      11    22456676 8887   55 5666666789999998 4 44332 2


Q ss_pred             eecCCcceEEEEEeCCCCeEEEecCCCcEEEEecC
Q 021291          248 MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD  282 (314)
Q Consensus       248 ~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~  282 (314)
                      +..+...+.+++++++|.++++...++.|..||.+
T Consensus       220 ~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~  254 (299)
T 2z2n_A          220 IPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN  254 (299)
T ss_dssp             CSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred             CCCCCCCceeEEECCCCCEEEeccCCceEEEECCC
Confidence            23345678999999999877776678899999984

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.42  E-value=9.8e-12  Score=102.01  Aligned_cols=171  Identities=13%  Similarity=0.039  Sum_probs=116.6

Q ss_pred             ceeEEEEccCCCEEEEecCCCeEEEEeCCCCe-----------EEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291           20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-----------TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (314)
Q Consensus        20 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v   88 (314)
                      .++.+++++...++++|+.++ +++|+++..+           ...... +.  . |..|+| .   ++.|+++ .++.|
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~-lp--~-V~~l~f-d---~~~L~v~-~~~~l  108 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE-IP--D-VIFVCF-H---GDQVLVS-TRNAL  108 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE-CT--T-EEEEEE-E---TTEEEEE-ESSEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEee-CC--C-eeEEEE-C---CCEEEEE-cCCcE
Confidence            689999999999999999985 6679865332           112222 32  4 999999 3   4888888 88999


Q ss_pred             EEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEee
Q 021291           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG  168 (314)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  168 (314)
                      ++||+.+.....    ...........                                      +.+.+  ..++  .+
T Consensus       109 ~v~dv~sl~~~~----~~~~~~~~v~~--------------------------------------i~~~~--p~~a--v~  142 (388)
T 1xip_A          109 YSLDLEELSEFR----TVTSFEKPVFQ--------------------------------------LKNVN--NTLV--IL  142 (388)
T ss_dssp             EEEESSSTTCEE----EEEECSSCEEE--------------------------------------EEECS--SEEE--EE
T ss_pred             EEEEchhhhccC----ccceeecceee--------------------------------------EEecC--CCEE--EE
Confidence            999998765211    11111111110                                      11222  2233  34


Q ss_pred             cCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCc--eE
Q 021291          169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP--LT  246 (314)
Q Consensus       169 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~--~~  246 (314)
                      +.||.|.+||+.++.... +.               ..+.+++ |+|+   |   ++.|..||.+++|+... ...  ..
T Consensus       143 ~~dG~L~v~dl~~~~~~~-~~---------------~~Vs~v~-WSpk---G---~~vg~~dg~i~~~~~~~-~~~~~k~  198 (388)
T 1xip_A          143 NSVNDLSALDLRTKSTKQ-LA---------------QNVTSFD-VTNS---Q---LAVLLKDRSFQSFAWRN-GEMEKQF  198 (388)
T ss_dssp             ETTSEEEEEETTTCCEEE-EE---------------ESEEEEE-ECSS---E---EEEEETTSCEEEEEEET-TEEEEEE
T ss_pred             ECCCCEEEEEccCCcccc-cc---------------CCceEEE-EcCC---c---eEEEEcCCcEEEEcCCC-ccccccc
Confidence            458999999999877643 22               2577887 9998   4   67788999999998885 443  44


Q ss_pred             ee------e---cCCcceEEEEEeCCCCeEEEe
Q 021291          247 AM------K---VHLEPVLCLSIDESCNGGISG  270 (314)
Q Consensus       247 ~~------~---~h~~~v~~~~~~~~~~~l~s~  270 (314)
                      ++      .   +|...|.+|.|.+++.++++-
T Consensus       199 ~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          199 EFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             EECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             eecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence            45      2   477899999999999988763

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.41  E-value=2e-13  Score=112.78  Aligned_cols=188  Identities=13%  Similarity=0.070  Sum_probs=106.0

Q ss_pred             CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeec
Q 021291           29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKT  108 (314)
Q Consensus        29 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~  108 (314)
                      ++..+++++.||.|+.||..+|+.+..+..  ..  +.+..+..  ++..+++++.||.|+.||.++++...  .+....
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~--~~s~p~~~--~g~~~v~~s~dg~l~a~d~~tG~~~w--~~~~~~   79 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DP--VLQVPTHV--EEPAFLPDPNDGSLYTLGSKNNEGLT--KLPFTI   79 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CC--SCCCC-------CCEEECTTTCCEEEC-----CCSE--ECSCCH
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CC--ceecceEc--CCCEEEEeCCCCEEEEEECCCCceee--eeeccC
Confidence            567899999999999999999999988876  22  45555556  66788888899999999999887643  111111


Q ss_pred             ceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceeeee
Q 021291          109 NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRL  188 (314)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~  188 (314)
                      ....      ...                                ..+. .+..++  .++.|+.|+.||.++++.+..+
T Consensus        80 ~~~~------~~s--------------------------------p~~~-~~~~v~--~g~~dg~v~a~D~~tG~~~w~~  118 (369)
T 2hz6_A           80 PELV------QAS--------------------------------PCRS-SDGILY--MGKKQDIWYVIDLLTGEKQQTL  118 (369)
T ss_dssp             HHHH------TTC--------------------------------SCC------CC--CCEEEEEEEEECCC--------
T ss_pred             cccc------ccC--------------------------------ceEe-cCCEEE--EEeCCCEEEEEECCCCcEEEEe
Confidence            0000      000                                0011 223333  4556899999999999987776


Q ss_pred             cccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCC---C
Q 021291          189 HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESC---N  265 (314)
Q Consensus       189 ~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~---~  265 (314)
                      ..        +.        ... ++|+   +. .+++++.|+.|+.||.++ ++.+..+..+.  .....++++.   .
T Consensus       119 ~~--------~~--------~~~-~~p~---~~-~v~~~~~dg~v~a~d~~t-G~~~W~~~~~~--~~~~~~~~~~~~~~  174 (369)
T 2hz6_A          119 SS--------AF--------ADS-LSPS---TS-LLYLGRTEYTITMYDTKT-RELRWNATYFD--YAASLPEDDVDYKM  174 (369)
T ss_dssp             -----------------------------------EEEEEEEEEEECCCSSS-SSCCCEEEEEE--ECCBCCCCCTTCCC
T ss_pred             cC--------CC--------ccc-cccc---CC-EEEEEecCCEEEEEECCC-CCEEEeEeccc--ccCccccCCccccc
Confidence            62        21        122 5664   33 788888999999999998 77665554221  1223334432   3


Q ss_pred             eEEEecCCCcEEEEecCCCeeeEe
Q 021291          266 GGISGGADQKIVLYNLDHSTYVLF  289 (314)
Q Consensus       266 ~l~s~s~dg~i~iw~~~~~~~~~~  289 (314)
                      .++.++.||.|+.||.++++.++.
T Consensus       175 ~v~~~~~dg~v~a~d~~tG~~~W~  198 (369)
T 2hz6_A          175 SHFVSNGDGLVVTVDSESGDVLWI  198 (369)
T ss_dssp             CEEEEETSCEEEEECTTTCCEEEE
T ss_pred             eEEEECCCCEEEEEECCCCcEEEE
Confidence            577788999999999999998875

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.37  E-value=1.5e-08  Score=80.78  Aligned_cols=260  Identities=8%  Similarity=-0.024  Sum_probs=151.8

Q ss_pred             CCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCC
Q 021291           16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN   95 (314)
Q Consensus        16 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~   95 (314)
                      .....+.++++.++|+++++...++.|.+||.. ++... +........+.++++.+  ++..+++...++.|..||.. 
T Consensus        17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~v~~~d~~-   91 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSS--LGDIWFTENGANKIGKLSKK-   91 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECT--TSCEEEEETTTTEEEEECTT-
T ss_pred             CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECC--CCCEEEEecCCCeEEEECCC-
Confidence            345688999999999988888788999999987 55443 32222224589999998  88877777668899999987 


Q ss_pred             CCCCCCCeeeeecceeeEEEeeeeeccccccccC-CCCcceeeccCCceeeecCCCC-CC---ceeccCCCceEEEeecC
Q 021291           96 GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA-NEPKDCYEREVGETVDTDSLCD-SK---DDVPAEGPKYMAVAGEQ  170 (314)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~g~~  170 (314)
                      ++..   .+...........+............. ......++.. +.......... ..   +++.++++ +++ +...
T Consensus        92 g~~~---~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~-l~v-~~~~  165 (300)
T 2qc5_A           92 GGFT---EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNA-LWF-TENQ  165 (300)
T ss_dssp             SCEE---EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSS-EEE-EETT
T ss_pred             CCeE---EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCC-EEE-EecC
Confidence            4421   112111111111122211111111111 1222223333 22222222211 11   77888886 444 4444


Q ss_pred             cCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEe-ee
Q 021291          171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA-MK  249 (314)
Q Consensus       171 d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~-~~  249 (314)
                      ++.|..||. +++... +..+      .    ....+..+. +.++   |. +.++....+.|.+||..  +..... +.
T Consensus       166 ~~~i~~~~~-~g~~~~-~~~~------~----~~~~~~~i~-~d~~---g~-l~v~~~~~~~i~~~~~~--g~~~~~~~~  226 (300)
T 2qc5_A          166 NNSIGRITN-TGKLEE-YPLP------T----NAAAPVGIT-SGND---GA-LWFVEIMGNKIGRITTT--GEISEYDIP  226 (300)
T ss_dssp             TTEEEEECT-TCCEEE-EECS------S----TTCCEEEEE-ECTT---SS-EEEEETTTTEEEEECTT--CCEEEEECS
T ss_pred             CCeEEEECC-CCcEEE-eeCC------C----CCCCcceEE-ECCC---CC-EEEEccCCCEEEEEcCC--CcEEEEECC
Confidence            678999998 554432 3210      1    123456676 8876   55 55665567789999983  443322 33


Q ss_pred             cCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe--------eeeeeecCCCceeceee
Q 021291          250 VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF--------GIGFVCDQEGNKFGTTW  306 (314)
Q Consensus       250 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~--------~~~~~~~~~~~~~~~~w  306 (314)
                      .+...+.+++++++|.+.++...++.|..|+.. ++....        ..++..+++|.++...+
T Consensus       227 ~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~  290 (300)
T 2qc5_A          227 TPNARPHAITAGKNSEIWFTEWGANQIGRITND-NTIQEYQLQTENAEPHGITFGKDGSVWFALK  290 (300)
T ss_dssp             STTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECCSTTCCCCCEEECTTSCEEEECS
T ss_pred             CCCCCceEEEECCCCCEEEeccCCCeEEEECCC-CcEEEEECCccCCccceeEeCCCCCEEEEcc
Confidence            345678999999999877777677899999984 432221        23355667776655543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.34  E-value=9.2e-10  Score=87.48  Aligned_cols=170  Identities=14%  Similarity=0.117  Sum_probs=110.8

Q ss_pred             CCceEEec-CCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC
Q 021291            8 PDPVAVLR-GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (314)
Q Consensus         8 ~~~~~~l~-~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg   86 (314)
                      ++.+..+. ++...+.+++++++|+++++...++.|.+||.. ++.+..+........+..+++++  +++++++...++
T Consensus       109 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~--~g~l~v~~~~~~  185 (286)
T 1q7f_A          109 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVND--KQEIFISDNRAH  185 (286)
T ss_dssp             SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECS--SSEEEEEEGGGT
T ss_pred             CcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECC--CCCEEEEECCCC
Confidence            34455553 344678999999999988888889999999954 66666664322223489999999  888777778899


Q ss_pred             eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEE
Q 021291           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV  166 (314)
Q Consensus        87 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (314)
                      .|++||.... .    ...+.......   .+.                                 .++++++|. +++ 
T Consensus       186 ~i~~~~~~g~-~----~~~~~~~g~~~---~p~---------------------------------~i~~d~~G~-l~v-  222 (286)
T 1q7f_A          186 CVKVFNYEGQ-Y----LRQIGGEGITN---YPI---------------------------------GVGINSNGE-ILI-  222 (286)
T ss_dssp             EEEEEETTCC-E----EEEESCTTTSC---SEE---------------------------------EEEECTTCC-EEE-
T ss_pred             EEEEEcCCCC-E----EEEEccCCccC---CCc---------------------------------EEEECCCCC-EEE-
Confidence            9999997542 1    11111100000   000                                 066888885 444 


Q ss_pred             eecCcC-eEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccC
Q 021291          167 AGEQLS-EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (314)
Q Consensus       167 ~g~~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~  240 (314)
                      +...++ .|.+||. +++.+..+.        .+..  ...+.+++ ++|+   |+ ++++ +.++.|++|+...
T Consensus       223 ~~~~~~~~i~~~~~-~g~~~~~~~--------~~~~--~~~~~~i~-~~~~---g~-l~vs-~~~~~v~v~~~~~  280 (286)
T 1q7f_A          223 ADNHNNFNLTIFTQ-DGQLISALE--------SKVK--HAQCFDVA-LMDD---GS-VVLA-SKDYRLYIYRYVQ  280 (286)
T ss_dssp             EECSSSCEEEEECT-TSCEEEEEE--------ESSC--CSCEEEEE-EETT---TE-EEEE-ETTTEEEEEECSC
T ss_pred             EeCCCCEEEEEECC-CCCEEEEEc--------ccCC--CCcceeEE-ECCC---Cc-EEEE-CCCCeEEEEEccc
Confidence            344455 9999995 466666665        2211  22356776 9987   65 5555 5789999999875

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.33  E-value=5e-10  Score=100.27  Aligned_cols=206  Identities=11%  Similarity=0.106  Sum_probs=124.8

Q ss_pred             CCCCceeEEEEccCCCEEE-----EecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC----
Q 021291           16 GHRASVTDVCFHQTKPILF-----AGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG----   86 (314)
Q Consensus        16 ~h~~~v~~~~~~~~~~~l~-----s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg----   86 (314)
                      +|...+..++|||||++||     .|+.+..|++||+.+++.+... ...  .....++|+   |++.|+.++.+.    
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~--~k~~~~~Ws---Dg~~l~y~~~~~~~~~  199 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKD--VKFSGISWL---GNEGFFYSSYDKPDGS  199 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEE--EESCCCEEE---TTTEEEEEESSCCC--
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCC--ceeccEEEe---CCCEEEEEEecCcccc
Confidence            4566788999999999888     3444568999999999865431 111  012466787   346777666663    


Q ss_pred             ---------eEEEEeCCCCCCCCCCeeeeec-ceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCcee
Q 021291           87 ---------TVKCWDIENGGLSSNPSLTIKT-NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDV  156 (314)
Q Consensus        87 ---------~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (314)
                               .|++|++.+.......++.... ......  .                                    +.|
T Consensus       200 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~--~------------------------------------~~~  241 (693)
T 3iuj_A          200 ELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYV--G------------------------------------ATV  241 (693)
T ss_dssp             -----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEE--E------------------------------------EEE
T ss_pred             cccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEE--E------------------------------------EEE
Confidence                     3888998776432211111111 111000  0                                    458


Q ss_pred             ccCCCceEEEeec--CcCeEEEEecCCCc-eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecC---
Q 021291          157 PAEGPKYMAVAGE--QLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED---  230 (314)
Q Consensus       157 ~~~~~~~~~~~g~--~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~d---  230 (314)
                      +|+|+.+++.+..  .+..|+++|+.++. ....+.        .+..    .....  ++++   |..+++....+   
T Consensus       242 SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~--------~~~~----~~~~~--~~~~---g~~l~~~t~~~~~~  304 (693)
T 3iuj_A          242 TEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQ--------GDLD----ADVSL--VDNK---GSTLYLLTNRDAPN  304 (693)
T ss_dssp             CTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEE--------CSSS----SCEEE--EEEE---TTEEEEEECTTCTT
T ss_pred             cCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEe--------CCCC----ceEEE--Eecc---CCEEEEEECCCCCC
Confidence            9999987765442  23589999998764 334444        2211    11111  4554   33255555443   


Q ss_pred             CcEEEEEccCCCCc--eEeeecCCcceEEEEEeCCCCeEEEecCCC---cEEEEecCCCe
Q 021291          231 GSILVWDIRNPGIP--LTAMKVHLEPVLCLSIDESCNGGISGGADQ---KIVLYNLDHST  285 (314)
Q Consensus       231 g~i~vwd~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg---~i~iw~~~~~~  285 (314)
                      +.|..+|+.+ +..  ...+..|...+.  .|++++..|+....++   .|++|+++.+.
T Consensus       305 ~~l~~~d~~~-~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~  361 (693)
T 3iuj_A          305 RRLVTVDAAN-PGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKR  361 (693)
T ss_dssp             CEEEEEETTS-CCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCE
T ss_pred             CEEEEEeCCC-CCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCe
Confidence            6799999987 333  355666766665  8888888776665543   68999988554

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.32  E-value=1e-09  Score=88.13  Aligned_cols=236  Identities=8%  Similarity=0.001  Sum_probs=133.6

Q ss_pred             CceEEecCCCCceeEEEEccCCC-EEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCe
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (314)
                      ..+..+...........|+|+|+ ++++...++.|..|+. +++ ...+..+.  ..+..+++.+  +++++++...++.
T Consensus        35 ~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~--~~~~gl~~d~--dG~l~v~~~~~~~  108 (305)
T 3dr2_A           35 ARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDAT--AFTNGNAVDA--QQRLVHCEHGRRA  108 (305)
T ss_dssp             CCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESC--SCEEEEEECT--TSCEEEEETTTTE
T ss_pred             CceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCC--CccceeeECC--CCCEEEEECCCCE
Confidence            34555666667788999999998 6778888999999997 454 34444444  3489999999  8886666556688


Q ss_pred             EEEEeCCCCCCCCCCeeeeecc----eeeEEEeeeeecccccc---cc-----------CCCCcceeeccC--Cceeeec
Q 021291           88 VKCWDIENGGLSSNPSLTIKTN----SYHFCKLSLVKEPYANA---KQ-----------ANEPKDCYEREV--GETVDTD  147 (314)
Q Consensus        88 v~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~---~~-----------~~~~~~~~~~~~--~~~~~~~  147 (314)
                      |.+||.. ++...  .......    ......+...+.....-   ..           ......++.+..  +......
T Consensus       109 v~~~~~~-g~~~~--~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~  185 (305)
T 3dr2_A          109 ITRSDAD-GQAHL--LVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA  185 (305)
T ss_dssp             EEEECTT-SCEEE--EECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE
T ss_pred             EEEECCC-CCEEE--EEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe
Confidence            9999986 43211  1111000    01111122111100000   00           001233444433  2211111


Q ss_pred             -CCCCCCceeccCCCceEEEeecC-----cCeEEEEecCCCcee--eeecccccCCCCCcCCCCCceeeeEEEecCCCCC
Q 021291          148 -SLCDSKDDVPAEGPKYMAVAGEQ-----LSEVEIWDLNTAERC--TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQ  219 (314)
Q Consensus       148 -~~~~~~~~~~~~~~~~~~~~g~~-----d~~i~vwd~~~~~~~--~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~  219 (314)
                       +.....++|+|+++.++++ .+.     ++.|.+||+......  ..+..       .    ..+....+. ++++   
T Consensus       186 ~~~~p~gl~~spdg~~lyv~-~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~-------~----~~~~pdgi~-~d~~---  249 (305)
T 3dr2_A          186 DLDHPNGLAFSPDEQTLYVS-QTPEQGHGSVEITAFAWRDGALHDRRHFAS-------V----PDGLPDGFC-VDRG---  249 (305)
T ss_dssp             EESSEEEEEECTTSSEEEEE-ECCC---CCCEEEEEEEETTEEEEEEEEEC-------C----SSSCCCSEE-ECTT---
T ss_pred             cCCCCcceEEcCCCCEEEEE-ecCCcCCCCCEEEEEEecCCCccCCeEEEE-------C----CCCCCCeEE-ECCC---
Confidence             1111118999999877653 332     268999998754411  11110       0    112233454 7776   


Q ss_pred             CceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCc
Q 021291          220 GFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQK  275 (314)
Q Consensus       220 g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~  275 (314)
                      |+  |.++..+ .|.+||..  ++.+..+..+. .+.+++|+++++.|..++.++.
T Consensus       250 G~--lwv~~~~-gv~~~~~~--g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l  299 (305)
T 3dr2_A          250 GW--LWSSSGT-GVCVFDSD--GQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCL  299 (305)
T ss_dssp             SC--EEECCSS-EEEEECTT--SCEEEEEECSS-CCCEEEECTTSCEEEEEETTEE
T ss_pred             CC--EEEecCC-cEEEECCC--CCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeE
Confidence            65  4444444 49999985  67777776554 5889999998887777766643

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.32  E-value=3.9e-09  Score=85.58  Aligned_cols=225  Identities=11%  Similarity=0.047  Sum_probs=129.8

Q ss_pred             CceeEEEEccC-CCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCC
Q 021291           19 ASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG   97 (314)
Q Consensus        19 ~~v~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~   97 (314)
                      .-..+.+|+|+ +.++++...++.|..||..+++.. .+.. .  ..+.+++|++  +++++++. .+ .|.+||..+++
T Consensus        49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~-~--~~v~~i~~~~--dg~l~v~~-~~-gl~~~d~~~g~  120 (326)
T 2ghs_A           49 LLGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHAL-P--FMGSALAKIS--DSKQLIAS-DD-GLFLRDTATGV  120 (326)
T ss_dssp             SBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEEC-S--SCEEEEEEEE--TTEEEEEE-TT-EEEEEETTTCC
T ss_pred             CCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEEC-C--CcceEEEEeC--CCeEEEEE-CC-CEEEEECCCCc
Confidence            34567899996 556677778899999999877643 3332 2  3499999999  87766654 44 59999998776


Q ss_pred             CCCCCeeeeec----ceeeEEEeeeeeccccccccC-----CCCcceeeccCCceeeecCC---CCCCceeccCCCceEE
Q 021291           98 LSSNPSLTIKT----NSYHFCKLSLVKEPYANAKQA-----NEPKDCYEREVGETVDTDSL---CDSKDDVPAEGPKYMA  165 (314)
Q Consensus        98 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  165 (314)
                      ...  ......    .......++..+.  ......     .....++.+..+ .......   ....++|+|+++.+++
T Consensus       121 ~~~--~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~~g-~~~~~~~~~~~~~~i~~s~dg~~lyv  195 (326)
T 2ghs_A          121 LTL--HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVAKG-KVTKLFADISIPNSICFSPDGTTGYF  195 (326)
T ss_dssp             EEE--EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEETT-EEEEEEEEESSEEEEEECTTSCEEEE
T ss_pred             EEE--EeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEeCC-cEEEeeCCCcccCCeEEcCCCCEEEE
Confidence            321  111110    1111122222211  111110     112344544422 2211111   1112889999987665


Q ss_pred             EeecCcCeEEEEecC--CC-cee--eeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccC
Q 021291          166 VAGEQLSEVEIWDLN--TA-ERC--TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (314)
Q Consensus       166 ~~g~~d~~i~vwd~~--~~-~~~--~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~  240 (314)
                       +.+.++.|.+||+.  ++ ...  ..+..        . .........+. +.++   |. +.++...++.|.+||.. 
T Consensus       196 -~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~--------~-~~~~~~p~gi~-~d~~---G~-lwva~~~~~~v~~~d~~-  259 (326)
T 2ghs_A          196 -VDTKVNRLMRVPLDARTGLPTGKAEVFID--------S-TGIKGGMDGSV-CDAE---GH-IWNARWGEGAVDRYDTD-  259 (326)
T ss_dssp             -EETTTCEEEEEEBCTTTCCBSSCCEEEEE--------C-TTSSSEEEEEE-ECTT---SC-EEEEEETTTEEEEECTT-
T ss_pred             -EECCCCEEEEEEcccccCCcccCceEEEE--------C-CCCCCCCCeeE-ECCC---CC-EEEEEeCCCEEEEECCC-
Confidence             45556899999986  55 321  11210        0 00123445565 7776   55 55555566889999984 


Q ss_pred             CCCceEeeecCCcceEEEEEe-CCCCeEE-EecCC
Q 021291          241 PGIPLTAMKVHLEPVLCLSID-ESCNGGI-SGGAD  273 (314)
Q Consensus       241 ~~~~~~~~~~h~~~v~~~~~~-~~~~~l~-s~s~d  273 (314)
                       ++.+..+..+...+++++|+ +++..|+ +...+
T Consensus       260 -g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~  293 (326)
T 2ghs_A          260 -GNHIARYEVPGKQTTCPAFIGPDASRLLVTSARE  293 (326)
T ss_dssp             -CCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred             -CCEEEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence             67777777777789999998 7876654 44333

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.32  E-value=5.3e-10  Score=91.42  Aligned_cols=242  Identities=10%  Similarity=-0.042  Sum_probs=138.0

Q ss_pred             CceeEEEEccCCCEEEEec--CCCeEEEEeCCCCeEEEEEec-----cCCcccEEEEEEcccCCCCeEEEeec-----CC
Q 021291           19 ASVTDVCFHQTKPILFAGT--TGGELRIWDTVQHRTVSSSWV-----HSAAHGIVSVATGPSIGLNKVISQGR-----DG   86 (314)
Q Consensus        19 ~~v~~~~~~~~~~~l~s~~--~dg~v~iwd~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~l~s~~~-----dg   86 (314)
                      ..+..++++++|+++++..  .++.++||.+.+++.. .+..     ..+...+..+++.+  +++++++-..     ++
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~--~g~L~v~D~g~~~~~~~   93 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDG--NGIVWMLDNGNQSKSVP   93 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECS--SSEEEEEECHHHHTSCC
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcC--CCcEEEEcCCCCcCCCC
Confidence            6889999999999988864  2343556655555432 2211     11124589999999  8665554433     57


Q ss_pred             eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCC-CCceeccCCCceEE
Q 021291           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCD-SKDDVPAEGPKYMA  165 (314)
Q Consensus        87 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  165 (314)
                      .|.+||+.+++...  .+.+......                                   ...+ .++++++++..+++
T Consensus        94 ~i~~~d~~tg~~~~--~~~~~~~~~~-----------------------------------~~~~~~~v~vd~~~g~~yv  136 (343)
T 2qe8_A           94 KLVAWDTLNNQLSR--VIYLPPPITL-----------------------------------SNSFVNDLAVDLIHNFVYI  136 (343)
T ss_dssp             EEEEEETTTTEEEE--EEECCTTTSC-----------------------------------TTCCCCEEEEETTTTEEEE
T ss_pred             eEEEEECCCCeEEE--EEECChhhcc-----------------------------------cccccceEEEecCCCEEEE
Confidence            89999999876422  1111100000                                   0000 01567776555555


Q ss_pred             Eeec---CcCeEEEEecCCCceeeeecccccC-C-C-----CCcC----CC------CCceeeeEEEecCCCCCCceEEE
Q 021291          166 VAGE---QLSEVEIWDLNTAERCTRLHQNSCG-G-S-----PNFS----SK------GRGMCMAVQAYLPSKSQGFVNVL  225 (314)
Q Consensus       166 ~~g~---~d~~i~vwd~~~~~~~~~~~~~~~~-~-~-----~~h~----~~------~~~~~~~~~~~~p~~~~g~~~l~  225 (314)
                       +..   .++.|.+||+.+++....+...... . .     .+..    ..      .......++ |+|+   |+ .|+
T Consensus       137 -td~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia-~s~d---g~-~ly  210 (343)
T 2qe8_A          137 -SDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIV-LDAE---NE-WLY  210 (343)
T ss_dssp             -EECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEE-ECTT---SC-EEE
T ss_pred             -EcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeE-eccC---CC-EEE
Confidence             443   5689999999888765554310000 0 0     0000    00      011246676 9997   55 566


Q ss_pred             EeecCC-cEEEEEccC--CCC-----ceE--eeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe------
Q 021291          226 AGYEDG-SILVWDIRN--PGI-----PLT--AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF------  289 (314)
Q Consensus       226 ~g~~dg-~i~vwd~~~--~~~-----~~~--~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~------  289 (314)
                      .+..++ .|..++...  .+.     ...  ...++......++++++|.++++...++.|.+||.++++....      
T Consensus       211 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~  290 (343)
T 2qe8_A          211 LSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKL  290 (343)
T ss_dssp             EEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGG
T ss_pred             EEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCce
Confidence            655554 555555321  011     000  1123344567799999999999998999999999855543221      


Q ss_pred             --eeeeeecCCCceeceee
Q 021291          290 --GIGFVCDQEGNKFGTTW  306 (314)
Q Consensus       290 --~~~~~~~~~~~~~~~~w  306 (314)
                        ..++++++++..+.+..
T Consensus       291 ~~p~~va~~~~g~l~v~~~  309 (343)
T 2qe8_A          291 SWTDSFNFGSDGYLYFDCN  309 (343)
T ss_dssp             SCEEEEEECTTSCEEEEEC
T ss_pred             ecCCeeEECCCCcEEEEeC
Confidence              34566777887776654

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.30  E-value=3.8e-09  Score=81.92  Aligned_cols=210  Identities=8%  Similarity=-0.005  Sum_probs=139.3

Q ss_pred             CceEEecCCCCc--eeEEEEccCCCEEEEecC--CCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeec
Q 021291            9 DPVAVLRGHRAS--VTDVCFHQTKPILFAGTT--GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (314)
Q Consensus         9 ~~~~~l~~h~~~--v~~~~~~~~~~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (314)
                      +.+.++. |...  ...++|++++.++++.+.  ++.|++.|+.+++.+..+..... .....+++..  + ...++.-.
T Consensus        10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~-~fgeGi~~~g--~-~lyv~t~~   84 (266)
T 2iwa_A           10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDS-YFGEGLTLLN--E-KLYQVVWL   84 (266)
T ss_dssp             EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTT-CCEEEEEEET--T-EEEEEETT
T ss_pred             eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCC-cceEEEEEeC--C-EEEEEEec
Confidence            4456664 5543  579999998755555443  67999999999999988764332 1234566654  2 44445556


Q ss_pred             CCeEEEEeCCCCCCCCCCeeeeecc-eeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCce
Q 021291           85 DGTVKCWDIENGGLSSNPSLTIKTN-SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY  163 (314)
Q Consensus        85 dg~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (314)
                      ++.+.++|..+.+.+.    ++... +..                                         ..++++|+.+
T Consensus        85 ~~~v~viD~~t~~v~~----~i~~g~~~g-----------------------------------------~glt~Dg~~l  119 (266)
T 2iwa_A           85 KNIGFIYDRRTLSNIK----NFTHQMKDG-----------------------------------------WGLATDGKIL  119 (266)
T ss_dssp             CSEEEEEETTTTEEEE----EEECCSSSC-----------------------------------------CEEEECSSSE
T ss_pred             CCEEEEEECCCCcEEE----EEECCCCCe-----------------------------------------EEEEECCCEE
Confidence            8899999999876533    22211 100                                         3366788888


Q ss_pred             EEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCC
Q 021291          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI  243 (314)
Q Consensus       164 ~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~  243 (314)
                      +++.+  ++.|.++|..+.+.+..+..       +.....-.....+. |. +   |+ +.+....++.|.+.|..+ ++
T Consensus       120 ~vs~g--s~~l~viD~~t~~v~~~I~V-------g~~~~p~~~~nele-~~-d---g~-lyvn~~~~~~V~vID~~t-g~  183 (266)
T 2iwa_A          120 YGSDG--TSILYEIDPHTFKLIKKHNV-------KYNGHRVIRLNELE-YI-N---GE-VWANIWQTDCIARISAKD-GT  183 (266)
T ss_dssp             EEECS--SSEEEEECTTTCCEEEEEEC-------EETTEECCCEEEEE-EE-T---TE-EEEEETTSSEEEEEETTT-CC
T ss_pred             EEECC--CCeEEEEECCCCcEEEEEEE-------CCCCcccccceeEE-EE-C---CE-EEEecCCCCeEEEEECCC-Cc
Confidence            86443  68999999999988887763       11000011234454 66 3   54 555555678999999998 88


Q ss_pred             ceEeeecC-------------CcceEEEEEeCCCC-eEEEecCCCcEEEEecCCC
Q 021291          244 PLTAMKVH-------------LEPVLCLSIDESCN-GGISGGADQKIVLYNLDHS  284 (314)
Q Consensus       244 ~~~~~~~h-------------~~~v~~~~~~~~~~-~l~s~s~dg~i~iw~~~~~  284 (314)
                      .+..+...             ....+.|+|+++++ +++++...+.|.+.++...
T Consensus       184 V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          184 LLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             EEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             EEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            88877631             13568999999875 5677778889999888654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.30  E-value=1.6e-09  Score=97.14  Aligned_cols=230  Identities=11%  Similarity=-0.026  Sum_probs=128.7

Q ss_pred             ccCCCEEEEecCCC-----eEEEEeCCCCeEEEEEecc----CCcccEEEEEEcccCCCCeEE-----EeecCCeEEEEe
Q 021291           27 HQTKPILFAGTTGG-----ELRIWDTVQHRTVSSSWVH----SAAHGIVSVATGPSIGLNKVI-----SQGRDGTVKCWD   92 (314)
Q Consensus        27 ~~~~~~l~s~~~dg-----~v~iwd~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~l~-----s~~~dg~v~iwd   92 (314)
                      +|+|++++....++     .|.+.+...++....+...    .+...+..++|+|  ||++|+     .|+.+.+|++||
T Consensus        76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SP--DG~~la~~~~~~G~~~~~i~v~d  153 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSW--DGKKVAFAQKPNAADEAVLHVID  153 (695)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECT--TSSEEEEEEEETTCSCCEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECC--CCCEEEEEECCCCCceEEEEEEE
Confidence            37888877655433     3455555455443333211    1113589999999  999988     444567899999


Q ss_pred             CCCCCCC-CCCeeeeecceeeEEEeeeeeccccccccCCC------------CcceeeccCCc---eeeecCCCCCC---
Q 021291           93 IENGGLS-SNPSLTIKTNSYHFCKLSLVKEPYANAKQANE------------PKDCYEREVGE---TVDTDSLCDSK---  153 (314)
Q Consensus        93 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~---~~~~~~~~~~~---  153 (314)
                      +.+++.. ..   .+.........+++.+...........            ....+++....   ........+..   
T Consensus       154 l~tg~~~~~~---~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~  230 (695)
T 2bkl_A          154 VDSGEWSKVD---VIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFL  230 (695)
T ss_dssp             TTTCCBCSSC---CBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEE
T ss_pred             CCCCCCcCCc---ccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEE
Confidence            9998764 21   111111122334443332222222111            13344554433   23333333332   


Q ss_pred             -ceeccCCCceEEEeecC--cCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEee--
Q 021291          154 -DDVPAEGPKYMAVAGEQ--LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY--  228 (314)
Q Consensus       154 -~~~~~~~~~~~~~~g~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~--  228 (314)
                       .+|+|+|+.+++.+...  ...|.+||..+++. ..+.        .+..    ...... + |+   |. +++...  
T Consensus       231 ~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~--------~~~~----~~~~~~-~-~~---g~-l~~~s~~~  291 (695)
T 2bkl_A          231 QSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLV--------KGVG----AKYEVH-A-WK---DR-FYVLTDEG  291 (695)
T ss_dssp             EEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEE--------ECSS----CCEEEE-E-ET---TE-EEEEECTT
T ss_pred             EEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEee--------cCCC----ceEEEE-e-cC---Cc-EEEEECCC
Confidence             88999998877654432  22677777655543 3333        1211    223332 4 44   55 555554  


Q ss_pred             -cCCcEEEEEccCCCCc--eEeeecC--CcceEEEEEeCCCCeEEEecCCCcEEEEecC
Q 021291          229 -EDGSILVWDIRNPGIP--LTAMKVH--LEPVLCLSIDESCNGGISGGADQKIVLYNLD  282 (314)
Q Consensus       229 -~dg~i~vwd~~~~~~~--~~~~~~h--~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~  282 (314)
                       .++.|.+||+.+ +..  ...+..+  ...+..++|+ ++.++++...|+..++|.++
T Consensus       292 ~~~~~l~~~d~~~-~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~  348 (695)
T 2bkl_A          292 APRQRVFEVDPAK-PARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT  348 (695)
T ss_dssp             CTTCEEEEEBTTB-CSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred             CCCCEEEEEeCCC-CCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence             358899999986 432  2344433  4468889998 66788999999998888665

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.29  E-value=1.1e-09  Score=89.69  Aligned_cols=258  Identities=7%  Similarity=-0.071  Sum_probs=145.4

Q ss_pred             CCceEEecCCCCceeEEEEccCCCEEEEec----------CCCeEEEEeCCCCeEEEEEeccCCc-----ccEEEEEEcc
Q 021291            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGT----------TGGELRIWDTVQHRTVSSSWVHSAA-----HGIVSVATGP   72 (314)
Q Consensus         8 ~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~~~~-----~~v~~~~~~~   72 (314)
                      .+.+.++..-..+  .++++||+++++++.          .++.|.+||+.+++.+.++......     .....++++|
T Consensus        56 ~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~Sp  133 (368)
T 1mda_H           56 GVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA  133 (368)
T ss_dssp             TEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECT
T ss_pred             CeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcC
Confidence            3455555533445  799999999888875          4789999999999999998754100     1246899999


Q ss_pred             cCCCCeEEEeec--CCeEEE--EeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccC----Ccee
Q 021291           73 SIGLNKVISQGR--DGTVKC--WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREV----GETV  144 (314)
Q Consensus        73 ~~~~~~l~s~~~--dg~v~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  144 (314)
                        |+++++.+..  +..|.+  +|..+   ..    .+.....  ..+.+............+.....++..    ....
T Consensus       134 --DGk~lyVan~~~~~~v~V~~iD~~t---v~----~i~v~~~--~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v  202 (368)
T 1mda_H          134 --SSACLLFFLFGSSAAAGLSVPGASD---DQ----LTKSASC--FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIV  202 (368)
T ss_dssp             --TSSCEEEEECSSSCEEEEEETTTEE---EE----EEECSSC--CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEEC
T ss_pred             --CCCEEEEEccCCCCeEEEEEEchhh---ce----EEECCCc--eEEccCCCeEEEEEcCCCCEEEEECccccccCCeE
Confidence              9999998875  467888  99876   11    1111100  001122211111222222333334433    1111


Q ss_pred             ee----cCC-CCCCceeccCCCceEEEeecCcCeEEEEecCCCc--eeeeecccccCCCCCcCCCCCceeeeEEEecCCC
Q 021291          145 DT----DSL-CDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSK  217 (314)
Q Consensus       145 ~~----~~~-~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~--~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~  217 (314)
                      ..    ... +..... .+++..++.+ ..  +.|.+.|+....  .+..+..... ....+.. .......+. |+|+ 
T Consensus       203 ~~~~t~~i~vg~~P~~-~~~~~~~~~v-s~--~~V~viD~~~~~~~v~~~~~~~~~-~~~~~~~-~p~g~~~v~-~s~d-  274 (368)
T 1mda_H          203 GAQCTGAQNCSSQAAQ-ANYPGMLVWA-VA--SSILQGDIPAAGATMKAAIDGNES-GRKADNF-RSAGFQMVA-KLKN-  274 (368)
T ss_dssp             CCCSCTTSCBCSCCEE-ETTTTEEEEC-BS--SCCEEEECCSSCCEEECCCCSSCT-HHHHTTE-EECSSSCEE-EETT-
T ss_pred             EEEeeeeeeCCCCccc-cccCCEEEEE-cC--CEEEEEECCCCcceEEEEEEeccc-ccccccc-ccCcceeeE-EcCC-
Confidence            10    000 000123 5666655543 33  789999986543  2222211000 0000000 000011144 8988 


Q ss_pred             CCCceEEEEee---c-----CCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCe-EEEec-CCCcEEEEecCCCeee
Q 021291          218 SQGFVNVLAGY---E-----DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNG-GISGG-ADQKIVLYNLDHSTYV  287 (314)
Q Consensus       218 ~~g~~~l~~g~---~-----dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~s-~dg~i~iw~~~~~~~~  287 (314)
                        ++.++++..   .     ++.+.++|+.+ .+.+..+.... ....|+|++++++ +++.. .++.|.++|+.+++.+
T Consensus       275 --g~~lyV~~~~~~~~~~~~~~~~~ViD~~t-~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv  350 (368)
T 1mda_H          275 --TDGIMILTVEHSRSCLAAAENTSSVTASV-GQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ  350 (368)
T ss_dssp             --TTEEEEEEEECSSCTTSCEEEEEEEESSS-CCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred             --CCEEEEEeccccCcccccCCCEEEEECCC-CeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEE
Confidence              442333333   1     23566999998 77788777533 6789999999974 56666 5999999999999988


Q ss_pred             Eee
Q 021291          288 LFG  290 (314)
Q Consensus       288 ~~~  290 (314)
                      ..+
T Consensus       351 ~~I  353 (368)
T 1mda_H          351 SSV  353 (368)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            764

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.29  E-value=2.9e-08  Score=79.08  Aligned_cols=236  Identities=7%  Similarity=-0.040  Sum_probs=136.0

Q ss_pred             CCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCC
Q 021291           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG   96 (314)
Q Consensus        17 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~   96 (314)
                      +...+.+++++++|+++++...++.|..||.. ++. ..+........+.++++.+  ++.++++...++.|..||. ++
T Consensus        55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~d~-~g  129 (299)
T 2z2n_A           55 PDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGP--NGDIWFTEMNGNRIGRITD-DG  129 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECT--TSCEEEEETTTTEEEEECT-TC
T ss_pred             ccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECC--CCCEEEEecCCceEEEECC-CC
Confidence            45678999999999988888778899999976 433 3333221224589999999  8887777777889999998 44


Q ss_pred             CCCCCCeeeeecceeeEEEeeeeecccccccc-CCCCcceeeccCCceeeecCCCCC-C---ceeccCCCceEEEeecCc
Q 021291           97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQ-ANEPKDCYEREVGETVDTDSLCDS-K---DDVPAEGPKYMAVAGEQL  171 (314)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~g~~d  171 (314)
                      +..   .+...........+............ .......++. .+........... .   +++.++|. +++ +...+
T Consensus       130 ~~~---~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v-~~~~~  203 (299)
T 2z2n_A          130 KIR---EYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDA-LWF-VEIIG  203 (299)
T ss_dssp             CEE---EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSS-EEE-EETTT
T ss_pred             CEE---EecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCC-EEE-EccCC
Confidence            321   11111111111111111111111111 1122333333 2222222122111 1   78888876 444 34446


Q ss_pred             CeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEee--e
Q 021291          172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM--K  249 (314)
Q Consensus       172 ~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~--~  249 (314)
                      +.|.+||. +++.. .+...      .    ....+.++. ++|+   |+ +.++...++.|..||..  +.. ..+  .
T Consensus       204 ~~i~~~~~-~g~~~-~~~~~------~----~~~~~~~i~-~~~~---g~-l~v~~~~~~~i~~~d~~--g~~-~~~~~~  263 (299)
T 2z2n_A          204 NKIGRITT-SGEIT-EFKIP------T----PNARPHAIT-AGAG---ID-LWFTEWGANKIGRLTSN--NII-EEYPIQ  263 (299)
T ss_dssp             TEEEEECT-TCCEE-EEECS------S----TTCCEEEEE-ECST---TC-EEEEETTTTEEEEEETT--TEE-EEEECS
T ss_pred             ceEEEECC-CCcEE-EEECC------C----CCCCceeEE-ECCC---CC-EEEeccCCceEEEECCC--Cce-EEEeCC
Confidence            88999998 66533 23210      1    123566776 8887   55 55555567899999984  432 233  3


Q ss_pred             cCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCe
Q 021291          250 VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST  285 (314)
Q Consensus       250 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~  285 (314)
                      .+...+.++++ +++.++++.+ .+.|..++.++++
T Consensus       264 ~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~  297 (299)
T 2z2n_A          264 IKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKDN  297 (299)
T ss_dssp             SSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC---
T ss_pred             CCCCccceEEe-cCCCEEEEec-CCcEEEEEcCccc
Confidence            44567899999 8888766655 5667777776543

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.28  E-value=9e-09  Score=84.90  Aligned_cols=122  Identities=7%  Similarity=-0.094  Sum_probs=79.4

Q ss_pred             EEccCCCEEEEecC--CC---eEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEee----------cCCeEE
Q 021291           25 CFHQTKPILFAGTT--GG---ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG----------RDGTVK   89 (314)
Q Consensus        25 ~~~~~~~~l~s~~~--dg---~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----------~dg~v~   89 (314)
                      ...|+++++++...  ..   .|.++|..+++.+..+....  .+  .++++|  |+++++.+.          .++.|.
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~--~p--~i~~sp--Dg~~lyv~n~~~~~~~rg~~~~~v~  100 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF--LP--NPVAAH--SGSEFALASTSFSRIAKGKRTDYVE  100 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCC--CC--CeEECC--CCCEEEEEeccccccccCCCCCeEE
Confidence            34468887776653  22   88999999999887776433  23  999999  999999876          367899


Q ss_pred             EEeCCCCCCCCCCeeeeecc-eeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEee
Q 021291           90 CWDIENGGLSSNPSLTIKTN-SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG  168 (314)
Q Consensus        90 iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  168 (314)
                      +||..+.+.+.    .+... ......                                ......++|+|+|++++++..
T Consensus       101 viD~~t~~~~~----~i~~~~~~~~~~--------------------------------g~~p~~~~~spDG~~l~v~n~  144 (373)
T 2mad_H          101 VFDPVTFLPIA----DIELPDAPRFDV--------------------------------GPYSWMNANTPNNADLLFFQF  144 (373)
T ss_pred             EEECCCCcEEE----EEECCCcccccc--------------------------------CCCccceEECCCCCEEEEEec
Confidence            99998765433    21111 000000                                000001678899988776432


Q ss_pred             cCcCeEEEEecCCCceeee-ec
Q 021291          169 EQLSEVEIWDLNTAERCTR-LH  189 (314)
Q Consensus       169 ~~d~~i~vwd~~~~~~~~~-~~  189 (314)
                      ..++.|.++| .+++.+.. +.
T Consensus       145 ~~~~~v~viD-~t~~~~~~~i~  165 (373)
T 2mad_H          145 AAGPAVGLVV-QGGSSDDQLLS  165 (373)
T ss_pred             CCCCeEEEEE-CCCCEEeEEcC
Confidence            2257899999 88887776 54

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.27  E-value=8.7e-10  Score=90.19  Aligned_cols=199  Identities=11%  Similarity=0.000  Sum_probs=129.5

Q ss_pred             EEEccCCCEEEEecC-----CCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEee----------cCCeE
Q 021291           24 VCFHQTKPILFAGTT-----GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG----------RDGTV   88 (314)
Q Consensus        24 ~~~~~~~~~l~s~~~-----dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----------~dg~v   88 (314)
                      ....|+++.++....     ++.|.+.|..+++.+..+.....  + . ++++|  |+++++.++          .++.|
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~--P-~-va~sp--DG~~lyVan~~~~r~~~G~~~~~V  111 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL--P-N-PVVAD--DGSFIAHASTVFSRIARGERTDYV  111 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS--C-E-EEECT--TSSCEEEEEEEEEETTEEEEEEEE
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCC--C-c-EEECC--CCCEEEEEcccccccccCCCCCEE
Confidence            445688888877654     68999999999999998876543  3 3 99999  999888775          36789


Q ss_pred             EEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC-ceeccCCCceEEEe
Q 021291           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-DDVPAEGPKYMAVA  167 (314)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  167 (314)
                      .+||..+.+.+.    ++.......  ...                              ..+.. ++++|||++++++.
T Consensus       112 sviD~~t~~v~~----~I~v~~g~r--~~~------------------------------g~~P~~~a~spDGk~lyVan  155 (386)
T 3sjl_D          112 EVFDPVTLLPTA----DIELPDAPR--FLV------------------------------GTYPWMTSLTPDGKTLLFYQ  155 (386)
T ss_dssp             EEECTTTCCEEE----EEEETTCCC--CCB------------------------------SCCGGGEEECTTSSEEEEEE
T ss_pred             EEEECCCCeEEE----EEECCCccc--ccc------------------------------CCCCceEEEcCCCCEEEEEE
Confidence            999999886533    221110000  000                              00000 67999999887643


Q ss_pred             ecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEe
Q 021291          168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA  247 (314)
Q Consensus       168 g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~  247 (314)
                      ...++.|.++|+.+++.+.++..             .+ +  .. ..|.+  .+ .+++.+.||.+.+.++...++....
T Consensus       156 ~~~~~~VsVID~~t~~vv~tI~v-------------~g-~--~~-~~P~g--~~-~~~~~~~DG~~~~v~~~~~g~v~~~  215 (386)
T 3sjl_D          156 FSPAPAVGVVDLEGKAFKRMLDV-------------PD-C--YH-IFPTA--PD-TFFMHCRDGSLAKVAFGTEGTPEIT  215 (386)
T ss_dssp             CSSSCEEEEEETTTTEEEEEEEC-------------CS-E--EE-EEEEE--TT-EEEEEETTSCEEEEECCSSSCCEEE
T ss_pred             cCCCCeEEEEECCCCcEEEEEEC-------------CC-c--ce-eecCC--Cc-eeEEECCCCCEEEEECCCCCeEEEe
Confidence            33368999999999999888872             11 1  11 33432  22 6778888999999998753444322


Q ss_pred             eecC----CcceE-EEEEe-CCCCeEEEecCCCcEEEEecCCCe
Q 021291          248 MKVH----LEPVL-CLSID-ESCNGGISGGADQKIVLYNLDHST  285 (314)
Q Consensus       248 ~~~h----~~~v~-~~~~~-~~~~~l~s~s~dg~i~iw~~~~~~  285 (314)
                      ...+    ..++. ...|. ++|++++ .+.+|.|.+.|+..+.
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~  258 (386)
T 3sjl_D          216 HTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGD  258 (386)
T ss_dssp             ECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSS
T ss_pred             ecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCc
Confidence            2111    12222 24664 6776554 4558999999997654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.24  E-value=2e-09  Score=86.08  Aligned_cols=188  Identities=16%  Similarity=0.075  Sum_probs=116.3

Q ss_pred             EEEEEeccCCcccEEEEEEcccCCCC-eEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCC
Q 021291           52 TVSSSWVHSAAHGIVSVATGPSIGLN-KVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN  130 (314)
Q Consensus        52 ~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (314)
                      .+..+..+.  ....+++|+|  +++ +++++..++.|..||..++ . .  .+...... ...                
T Consensus        19 ~~~~l~~~~--~~~eg~~~d~--~g~~l~~~~~~~~~i~~~~~~~~-~-~--~~~~~~~~-~~~----------------   73 (296)
T 3e5z_A           19 EARRLADGF--TWTEGPVYVP--ARSAVIFSDVRQNRTWAWSDDGQ-L-S--PEMHPSHH-QNG----------------   73 (296)
T ss_dssp             CCEEEECCC--SSEEEEEEEG--GGTEEEEEEGGGTEEEEEETTSC-E-E--EEESSCSS-EEE----------------
T ss_pred             cEEEEecCC--ccccCCeEeC--CCCEEEEEeCCCCEEEEEECCCC-e-E--EEECCCCC-cce----------------
Confidence            334444444  3478999999  887 7778888999999999875 2 1  11111110 000                


Q ss_pred             CCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeE
Q 021291          131 EPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAV  210 (314)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  210 (314)
                                             ++++++|. +++ +...++.|.+||..+++......        .........+..+
T Consensus        74 -----------------------l~~~~dg~-l~v-~~~~~~~i~~~d~~~g~~~~~~~--------~~~~~~~~~~~~i  120 (296)
T 3e5z_A           74 -----------------------HCLNKQGH-LIA-CSHGLRRLERQREPGGEWESIAD--------SFEGKKLNSPNDV  120 (296)
T ss_dssp             -----------------------EEECTTCC-EEE-EETTTTEEEEECSTTCCEEEEEC--------EETTEECCCCCCE
T ss_pred             -----------------------eeECCCCc-EEE-EecCCCeEEEEcCCCCcEEEEee--------ccCCCCCCCCCCE
Confidence                                   56888886 443 44446889999998877543322        1111111234556


Q ss_pred             EEecCCCCCCceEEEE----eec-------------CCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCC
Q 021291          211 QAYLPSKSQGFVNVLA----GYE-------------DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD  273 (314)
Q Consensus       211 ~~~~p~~~~g~~~l~~----g~~-------------dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d  273 (314)
                      . ++|+   |+ ++++    |..             .+.|..++..  + .+..+..+......++|+|+++.|++.+.+
T Consensus       121 ~-~d~~---G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g-~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~  192 (296)
T 3e5z_A          121 C-LAPD---GS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--G-TLSAPIRDRVKPNGLAFLPSGNLLVSDTGD  192 (296)
T ss_dssp             E-ECTT---SC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--S-CEEEEECCCSSEEEEEECTTSCEEEEETTT
T ss_pred             E-ECCC---CC-EEEECCccccccccccccccccCCCcEEEEECCC--C-CEEEeecCCCCCccEEECCCCCEEEEeCCC
Confidence            6 8887   65 5665    331             2345555543  3 344455566778999999999988888888


Q ss_pred             CcEEEEecC-CCee---eEe-------eeeeeecCCCceecee
Q 021291          274 QKIVLYNLD-HSTY---VLF-------GIGFVCDQEGNKFGTT  305 (314)
Q Consensus       274 g~i~iw~~~-~~~~---~~~-------~~~~~~~~~~~~~~~~  305 (314)
                      +.|.+|+++ .++.   ...       ..++.++++|.++.+.
T Consensus       193 ~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~  235 (296)
T 3e5z_A          193 NATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA  235 (296)
T ss_dssp             TEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE
T ss_pred             CeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc
Confidence            999999997 4433   111       1356777887766543

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.21  E-value=1.1e-08  Score=85.59  Aligned_cols=207  Identities=9%  Similarity=-0.006  Sum_probs=129.9

Q ss_pred             EEEccCCCEEEEecCCC--eEEEEeCCCCeEEEEE---ec-cCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCC
Q 021291           24 VCFHQTKPILFAGTTGG--ELRIWDTVQHRTVSSS---WV-HSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG   97 (314)
Q Consensus        24 ~~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~~~~---~~-~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~   97 (314)
                      ++|+++++.|+++..++  .|.+|+...+.....+   .. ..  ..+.+++++|  +...|+.+..++.|..||..++.
T Consensus       176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~--~~p~~iav~p--~~g~lyv~d~~~~I~~~d~~~~~  251 (409)
T 3hrp_A          176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFS--GKIGAVALDE--TEEWLYFVDSNKNFGRFNVKTQE  251 (409)
T ss_dssp             CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSC--SCCCBCEECT--TSSEEEEECTTCEEEEEETTTCC
T ss_pred             eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhc--CCcEEEEEeC--CCCeEEEEECCCcEEEEECCCCC
Confidence            89999999888888766  7999998765544333   11 22  4478999999  66777777778999999998764


Q ss_pred             CCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEE
Q 021291           98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIW  177 (314)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vw  177 (314)
                      ..   .+........ ....+.                                ..++|+|++..+++ +...++.|+.|
T Consensus       252 ~~---~~~~~~~~g~-~~~~P~--------------------------------~~ia~~p~~g~lyv-~d~~~~~I~~~  294 (409)
T 3hrp_A          252 VT---LIKQLELSGS-LGTNPG--------------------------------PYLIYYFVDSNFYM-SDQNLSSVYKI  294 (409)
T ss_dssp             EE---EEEECCCCSC-CCCSSC--------------------------------CEEEEETTTTEEEE-EETTTTEEEEE
T ss_pred             EE---EEecccccCC-CCCCcc--------------------------------ccEEEeCCCCEEEE-EeCCCCEEEEE
Confidence            21   1000000000 000000                                01678997666665 45557899999


Q ss_pred             ecCCCceeeeecccccCCCCCcCC-----CCCceeeeEEEecCCCCCCceEEEEee-cCCcEEEEEccCCCCceEeeecC
Q 021291          178 DLNTAERCTRLHQNSCGGSPNFSS-----KGRGMCMAVQAYLPSKSQGFVNVLAGY-EDGSILVWDIRNPGIPLTAMKVH  251 (314)
Q Consensus       178 d~~~~~~~~~~~~~~~~~~~~h~~-----~~~~~~~~~~~~~p~~~~g~~~l~~g~-~dg~i~vwd~~~~~~~~~~~~~h  251 (314)
                      |....  ...+....  ...+...     ..-.....++ ++|+   |+ ++++-. .++.|+.||+.+ +. +..+.++
T Consensus       295 ~~~g~--~~~~~g~~--~~~g~~dg~~~~~~~~~P~gia-~d~d---G~-lyvad~~~~~~I~~~~~~~-G~-v~~~~g~  363 (409)
T 3hrp_A          295 TPDGE--CEWFCGSA--TQKTVQDGLREEALFAQPNGMT-VDED---GN-FYIVDGFKGYCLRKLDILD-GY-VSTVAGQ  363 (409)
T ss_dssp             CTTCC--EEEEEECT--TCCSCBCEEGGGCBCSSEEEEE-ECTT---CC-EEEEETTTTCEEEEEETTT-TE-EEEEEEC
T ss_pred             ecCCC--EEEEEeCC--CCCCcCCCcccccEeCCCeEEE-EeCC---CC-EEEEeCCCCCEEEEEECCC-CE-EEEEeCC
Confidence            97643  22232100  0001100     0012356776 9987   66 777777 889999999765 44 4445444


Q ss_pred             ---------------CcceEEEEEeCCCCeEEEecCCCcEEEEecC
Q 021291          252 ---------------LEPVLCLSIDESCNGGISGGADQKIVLYNLD  282 (314)
Q Consensus       252 ---------------~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~  282 (314)
                                     -.....|++++++.++++-..++.|+.++++
T Consensus       364 ~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          364 VDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             TTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred             CCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence                           2357899999999888888888899888763

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.19  E-value=1.5e-08  Score=77.66  Aligned_cols=195  Identities=10%  Similarity=0.088  Sum_probs=125.6

Q ss_pred             ceEEecCCCCce--eEEEEccCCCEEEEecCCC--eEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEE-Eeec
Q 021291           10 PVAVLRGHRASV--TDVCFHQTKPILFAGTTGG--ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGR   84 (314)
Q Consensus        10 ~~~~l~~h~~~v--~~~~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~   84 (314)
                      .++++ .|...-  ..+.|+ ++.++.+.+.+|  .|+++|+++++.+..+...... .-..+++..    +.|+ ..-.
T Consensus        33 vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~-FgeGit~~g----~~ly~ltw~  105 (262)
T 3nol_A           33 IVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRY-FGEGISDWK----DKIVGLTWK  105 (262)
T ss_dssp             EEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTC-CEEEEEEET----TEEEEEESS
T ss_pred             EEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCcc-ceeEEEEeC----CEEEEEEee
Confidence            45555 455443  789998 677777777766  8999999999999888754321 123355533    4444 4445


Q ss_pred             CCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceE
Q 021291           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM  164 (314)
Q Consensus        85 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (314)
                      ++.+.+||..+.+.+.    ++......                                         ..++++++.++
T Consensus       106 ~~~v~v~D~~t~~~~~----ti~~~~eG-----------------------------------------~glt~dg~~L~  140 (262)
T 3nol_A          106 NGLGFVWNIRNLRQVR----SFNYDGEG-----------------------------------------WGLTHNDQYLI  140 (262)
T ss_dssp             SSEEEEEETTTCCEEE----EEECSSCC-----------------------------------------CCEEECSSCEE
T ss_pred             CCEEEEEECccCcEEE----EEECCCCc-----------------------------------------eEEecCCCEEE
Confidence            8899999999987544    22221100                                         23557777777


Q ss_pred             EEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCc
Q 021291          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (314)
Q Consensus       165 ~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~  244 (314)
                      ++.|  ++.|.++|..+.+.+.++....      ... .-..+..+. |. +   |+ +.+....+..|.+.|.++ ++.
T Consensus       141 ~SdG--s~~i~~iDp~T~~v~~~I~V~~------~g~-~~~~lNELe-~~-~---G~-lyan~w~~~~I~vIDp~t-G~V  204 (262)
T 3nol_A          141 MSDG--TPVLRFLDPESLTPVRTITVTA------HGE-ELPELNELE-WV-D---GE-IFANVWQTNKIVRIDPET-GKV  204 (262)
T ss_dssp             ECCS--SSEEEEECTTTCSEEEEEECEE------TTE-ECCCEEEEE-EE-T---TE-EEEEETTSSEEEEECTTT-CBE
T ss_pred             EECC--CCeEEEEcCCCCeEEEEEEecc------CCc-cccccceeE-EE-C---CE-EEEEEccCCeEEEEECCC-CcE
Confidence            6443  5789999999999888876310      000 001222344 54 3   54 555566788999999998 888


Q ss_pred             eEeeecC------------CcceEEEEEeCCCCeEEEecC
Q 021291          245 LTAMKVH------------LEPVLCLSIDESCNGGISGGA  272 (314)
Q Consensus       245 ~~~~~~h------------~~~v~~~~~~~~~~~l~s~s~  272 (314)
                      +..+...            .+..+.|+|+|++..|+..+.
T Consensus       205 ~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          205 TGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             EEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             EEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            7776632            135688999998776655543

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.16  E-value=1.2e-08  Score=92.10  Aligned_cols=231  Identities=12%  Similarity=-0.041  Sum_probs=123.5

Q ss_pred             ccCCCEEEEecCCCe---EEEE--eCC---CCeEEEEEec----cCCcccEEEEEEcccCCCCeEEEeecC-----CeEE
Q 021291           27 HQTKPILFAGTTGGE---LRIW--DTV---QHRTVSSSWV----HSAAHGIVSVATGPSIGLNKVISQGRD-----GTVK   89 (314)
Q Consensus        27 ~~~~~~l~s~~~dg~---v~iw--d~~---~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~l~s~~~d-----g~v~   89 (314)
                      +|+|++++....++.   -.+|  +..   .++....+..    ..+...+..++|+|  ||++|+.++.+     .+|+
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SP--DG~~la~~~~~~G~e~~~i~  192 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASD--DGRLLAYSVQDGGSDWRTVK  192 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECT--TSSEEEEEEEETTCSEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECC--CCCEEEEEEcCCCCceEEEE
Confidence            378988776544332   3444  443   3333322211    11112488999999  99999876553     3699


Q ss_pred             EEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCC-----------C--cceeeccCCc---eeeecCCCCCC
Q 021291           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANE-----------P--KDCYEREVGE---TVDTDSLCDSK  153 (314)
Q Consensus        90 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~--~~~~~~~~~~---~~~~~~~~~~~  153 (314)
                      +||+.+++...  . ...........+++. ...........           .  ...+++....   ........+..
T Consensus       193 v~dl~tg~~~~--~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~  268 (741)
T 1yr2_A          193 FVGVADGKPLA--D-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPK  268 (741)
T ss_dssp             EEETTTCCEEE--E-EEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTT
T ss_pred             EEECCCCCCCC--c-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCe
Confidence            99999987532  1 111111112223333 22222221111           1  2233443332   22222333322


Q ss_pred             ----ceeccCCCceEEEeec---CcCeEEEEecCCC--ceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEE
Q 021291          154 ----DDVPAEGPKYMAVAGE---QLSEVEIWDLNTA--ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNV  224 (314)
Q Consensus       154 ----~~~~~~~~~~~~~~g~---~d~~i~vwd~~~~--~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l  224 (314)
                          ..|+|+|+.+++.+..   .+..|++||+.++  +....+.        .+..    .....  ++|+   |. .|
T Consensus       269 ~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~--------~~~~----~~~~~--~~~d---g~-~l  330 (741)
T 1yr2_A          269 RGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALI--------PDLK----AQWDF--VDGV---GD-QL  330 (741)
T ss_dssp             CEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEE--------CSSS----SCEEE--EEEE---TT-EE
T ss_pred             EEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEec--------CCCC----ceEEE--Eecc---CC-EE
Confidence                7899999987765543   1358999999876  3134444        2211    12222  3466   44 44


Q ss_pred             EEeec----CCcEEEEEccCCC-CceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecC
Q 021291          225 LAGYE----DGSILVWDIRNPG-IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD  282 (314)
Q Consensus       225 ~~g~~----dg~i~vwd~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~  282 (314)
                      +..+.    ++.|.+||+.++. .....+..+...+..++++ ++.++++...|+..+||.++
T Consensus       331 ~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~  392 (741)
T 1yr2_A          331 WFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFD  392 (741)
T ss_dssp             EEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEE
T ss_pred             EEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence            44443    4569999988631 2333344445567778888 55678888899988877654

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.16  E-value=2.2e-08  Score=83.35  Aligned_cols=120  Identities=9%  Similarity=-0.041  Sum_probs=81.9

Q ss_pred             cCCCEEEEecC-C----CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEee----------cCCeEEEEe
Q 021291           28 QTKPILFAGTT-G----GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG----------RDGTVKCWD   92 (314)
Q Consensus        28 ~~~~~l~s~~~-d----g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----------~dg~v~iwd   92 (314)
                      ++++.++.... +    +.|.++|..+++.+.++..-.  .+  .++++|  |+++++.+.          .++.|.++|
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~--~P--gia~Sp--Dgk~lyVan~~~~~~~~G~~~~~VsviD  155 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGF--LP--HPVAAE--DGSFFAQASTVFERIARGKRTDYVEVFD  155 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECS--SC--EEEECT--TSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCC--CC--ceEECC--CCCEEEEEeccccccccCCCCCEEEEEE
Confidence            36665555443 2    699999999999999987654  34  899999  999888776          467899999


Q ss_pred             CCCCCCCCCCeeeeecc-eeeE-EEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecC
Q 021291           93 IENGGLSSNPSLTIKTN-SYHF-CKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ  170 (314)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  170 (314)
                      ..+.+.+.    ++... .... ....+.                                 .+.++|+|++++++....
T Consensus       156 ~~t~~vv~----~I~v~g~~r~~~g~~P~---------------------------------~~~~spDGk~lyV~n~~~  198 (426)
T 3c75_H          156 PVTFLPIA----DIELPDAPRFLVGTYQW---------------------------------MNALTPDNKNLLFYQFSP  198 (426)
T ss_dssp             TTTCCEEE----EEEETTCCCCCBSCCGG---------------------------------GSEECTTSSEEEEEECSS
T ss_pred             CCCCcEEE----EEECCCccccccCCCcc---------------------------------eEEEcCCCCEEEEEecCC
Confidence            99886543    22110 0000 000000                                 067999999887643333


Q ss_pred             cCeEEEEecCCCceeeeecc
Q 021291          171 LSEVEIWDLNTAERCTRLHQ  190 (314)
Q Consensus       171 d~~i~vwd~~~~~~~~~~~~  190 (314)
                      ++.|.+.|+.+++.+.++..
T Consensus       199 ~~~VsVID~~t~kvv~~I~v  218 (426)
T 3c75_H          199 APAVGVVDLEGKTFDRMLDV  218 (426)
T ss_dssp             SCEEEEEETTTTEEEEEEEC
T ss_pred             CCeEEEEECCCCeEEEEEEc
Confidence            57899999999988877763

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.14  E-value=2.3e-08  Score=78.49  Aligned_cols=216  Identities=10%  Similarity=-0.007  Sum_probs=120.6

Q ss_pred             cEEEEEEcccCCCCeEE-EeecCCeEEEEeCCCCCCCCCCeeeeec-ceeeEEEeeeeeccccccccCCCCcceeeccCC
Q 021291           64 GIVSVATGPSIGLNKVI-SQGRDGTVKCWDIENGGLSSNPSLTIKT-NSYHFCKLSLVKEPYANAKQANEPKDCYEREVG  141 (314)
Q Consensus        64 ~v~~~~~~~~~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (314)
                      ...++++++  ++++++ +...++.|.+||..+.....   ..... .......+...  ..............++....
T Consensus        25 ~p~~i~~~~--~g~l~v~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~p~~i~~~~~--g~l~v~~~~~~i~~~d~~~~   97 (270)
T 1rwi_B           25 SPSGVAVDS--AGNVYVTSEGMYGRVVKLATGSTGTTV---LPFNGLYQPQGLAVDGA--GTVYVTDFNNRVVTLAAGSN   97 (270)
T ss_dssp             CEEEEEECT--TCCEEEEECSSSCEEEEECC-----EE---CCCCSCCSCCCEEECTT--CCEEEEETTTEEEEECTTCS
T ss_pred             CccceEECC--CCCEEEEccCCCCcEEEecCCCcccce---EeeCCcCCcceeEECCC--CCEEEEcCCCEEEEEeCCCc
Confidence            478999999  888776 54778899999986653211   00110 11111112111  11111111222233333322


Q ss_pred             ceeeecCCCCCC---ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCC
Q 021291          142 ETVDTDSLCDSK---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKS  218 (314)
Q Consensus       142 ~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~  218 (314)
                      ............   ++++++|. +++ +...++.|.+|+..+........        ..    ......+. ++|+  
T Consensus        98 ~~~~~~~~~~~~p~~i~~~~~g~-l~v-~~~~~~~i~~~~~~~~~~~~~~~--------~~----~~~p~~i~-~~~~--  160 (270)
T 1rwi_B           98 NQTVLPFDGLNYPEGLAVDTQGA-VYV-ADRGNNRVVKLAAGSKTQTVLPF--------TG----LNDPDGVA-VDNS--  160 (270)
T ss_dssp             CCEECCCCSCSSEEEEEECTTCC-EEE-EEGGGTEEEEECTTCCSCEECCC--------CS----CCSCCCEE-ECTT--
T ss_pred             eEeeeecCCcCCCcceEECCCCC-EEE-EECCCCEEEEEECCCceeEeecc--------cc----CCCceeEE-EeCC--
Confidence            221111111122   88889886 444 44446889999866544322111        11    12345565 8886  


Q ss_pred             CCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeE-------eee
Q 021291          219 QGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVL-------FGI  291 (314)
Q Consensus       219 ~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~-------~~~  291 (314)
                       |+ ++++...++.|.+||... .........+...+.+++++++|.++++...++.|.+|+.+......       ...
T Consensus       161 -g~-l~v~~~~~~~i~~~~~~~-~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~  237 (270)
T 1rwi_B          161 -GN-VYVTDTDNNRVVKLEAES-NNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPL  237 (270)
T ss_dssp             -CC-EEEEEGGGTEEEEECTTT-CCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEE
T ss_pred             -CC-EEEEECCCCEEEEEecCC-CceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCce
Confidence             55 667766788999999875 43333223333678999999999877887788899999987654332       134


Q ss_pred             eeeecCCCceeceee
Q 021291          292 GFVCDQEGNKFGTTW  306 (314)
Q Consensus       292 ~~~~~~~~~~~~~~w  306 (314)
                      ++.++++|.++.+.+
T Consensus       238 ~i~~~~~g~l~v~~~  252 (270)
T 1rwi_B          238 AVAVDSDRTVYVADR  252 (270)
T ss_dssp             EEEECTTCCEEEEEG
T ss_pred             eEEECCCCCEEEEEC
Confidence            567778887766644

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.13  E-value=9e-10  Score=90.41  Aligned_cols=149  Identities=7%  Similarity=0.014  Sum_probs=99.6

Q ss_pred             cEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCC--C-----CCCeeeeecceeeEEEeeeeeccccccccCCCCccee
Q 021291           64 GIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL--S-----SNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCY  136 (314)
Q Consensus        64 ~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (314)
                      ++..+++++  ...++++|+.+ .+.+|++.....  .     .++..........                        
T Consensus        39 ~~nlLais~--~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~V~------------------------   91 (388)
T 1xip_A           39 SLQNLDISN--SKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPDVI------------------------   91 (388)
T ss_dssp             CCBCEEEET--TTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTTEE------------------------
T ss_pred             cccEEEEcC--CCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCCee------------------------
Confidence            489999999  88999999987 566698754320  0     0000011100000                        


Q ss_pred             eccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCC
Q 021291          137 EREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPS  216 (314)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~  216 (314)
                                      .++|  ++..++ + + .++.|++||+++........        .|.    ..+.++. +.+.
T Consensus        92 ----------------~l~f--d~~~L~-v-~-~~~~l~v~dv~sl~~~~~~~--------~~~----~~v~~i~-~~~p  137 (388)
T 1xip_A           92 ----------------FVCF--HGDQVL-V-S-TRNALYSLDLEELSEFRTVT--------SFE----KPVFQLK-NVNN  137 (388)
T ss_dssp             ----------------EEEE--ETTEEE-E-E-ESSEEEEEESSSTTCEEEEE--------ECS----SCEEEEE-ECSS
T ss_pred             ----------------EEEE--CCCEEE-E-E-cCCcEEEEEchhhhccCccc--------eee----cceeeEE-ecCC
Confidence                            0557  665444 3 3 57999999998776554444        332    2345555 4443


Q ss_pred             CCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCee
Q 021291          217 KSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTY  286 (314)
Q Consensus       217 ~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~  286 (314)
                            .++++..||.|.+||+.+ +....    +...|++++|+|+|  ++.|..||.+++|+.+..+.
T Consensus       138 ------~~av~~~dG~L~v~dl~~-~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~  194 (388)
T 1xip_A          138 ------TLVILNSVNDLSALDLRT-KSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEM  194 (388)
T ss_dssp             ------EEEEEETTSEEEEEETTT-CCEEE----EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEE
T ss_pred             ------CEEEEECCCCEEEEEccC-Ccccc----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccc
Confidence                  488889999999999997 54432    45689999999999  57888999999998887663

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.13  E-value=3.1e-07  Score=73.08  Aligned_cols=234  Identities=9%  Similarity=-0.037  Sum_probs=133.1

Q ss_pred             CCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCC
Q 021291           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG   96 (314)
Q Consensus        17 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~   96 (314)
                      +...+.++++.++|+++++...++.|..||.. ++.. .+........+.++++.+  ++.++++...++.|..||.. +
T Consensus        60 ~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~~~~-g  134 (300)
T 2qc5_A           60 PDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EYPLPQPDSGPYGITEGL--NGDIWFTQLNGDRIGKLTAD-G  134 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECS--TTCEEEEETTTTEEEEECTT-S
T ss_pred             CCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-EecCCCCCCCCccceECC--CCCEEEEccCCCeEEEECCC-C
Confidence            34678999999999888887778899999987 5543 333221124589999998  88877777768899999987 4


Q ss_pred             CCCCCCeeeeecceeeEEEeeeeeccccccccC-CCCcceeeccCCceeeecCCCCCC----ceeccCCCceEEEeecCc
Q 021291           97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA-NEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQL  171 (314)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d  171 (314)
                      +..   .+...........+............. ......++. ..............    +++.++|. +++ +....
T Consensus       135 ~~~---~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~-l~v-~~~~~  208 (300)
T 2qc5_A          135 TIY---EYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGA-LWF-VEIMG  208 (300)
T ss_dssp             CEE---EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSS-EEE-EETTT
T ss_pred             CEE---EccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCC-EEE-EccCC
Confidence            321   111111111111111111111111111 122223333 22222222222111    77888874 444 34445


Q ss_pred             CeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCce-Eeeec
Q 021291          172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL-TAMKV  250 (314)
Q Consensus       172 ~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~-~~~~~  250 (314)
                      +.|.+||. +++... +..+      .    ....+.++. ++++   |+ +.++...++.|..||..  +... ..+..
T Consensus       209 ~~i~~~~~-~g~~~~-~~~~------~----~~~~~~~i~-~d~~---g~-l~v~~~~~~~i~~~~~~--g~~~~~~~~~  269 (300)
T 2qc5_A          209 NKIGRITT-TGEISE-YDIP------T----PNARPHAIT-AGKN---SE-IWFTEWGANQIGRITND--NTIQEYQLQT  269 (300)
T ss_dssp             TEEEEECT-TCCEEE-EECS------S----TTCCEEEEE-ECST---TC-EEEEETTTTEEEEECTT--SCEEEEECCS
T ss_pred             CEEEEEcC-CCcEEE-EECC------C----CCCCceEEE-ECCC---CC-EEEeccCCCeEEEECCC--CcEEEEECCc
Confidence            78999998 444332 2210      1    123456776 8887   55 55555567899999984  4332 22333


Q ss_pred             CCcceEEEEEeCCCCeEEEecCCCcEEEEecC
Q 021291          251 HLEPVLCLSIDESCNGGISGGADQKIVLYNLD  282 (314)
Q Consensus       251 h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~  282 (314)
                      ....+.+++++++|.++++.. . .|..++.+
T Consensus       270 ~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~  299 (300)
T 2qc5_A          270 ENAEPHGITFGKDGSVWFALK-C-KIGKLNLN  299 (300)
T ss_dssp             TTCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred             cCCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence            345688999999998666554 4 67766653

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.11  E-value=3.8e-08  Score=81.31  Aligned_cols=205  Identities=10%  Similarity=0.011  Sum_probs=123.7

Q ss_pred             ceeEEEEccCCCEEEEecCC------CeEEEEeCCCCeEEEEEeccCCc-ccEEEEEEcccCCCCeEEEee---------
Q 021291           20 SVTDVCFHQTKPILFAGTTG------GELRIWDTVQHRTVSSSWVHSAA-HGIVSVATGPSIGLNKVISQG---------   83 (314)
Q Consensus        20 ~v~~~~~~~~~~~l~s~~~d------g~v~iwd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~s~~---------   83 (314)
                      .-..+...|+| +++++..+      |.|.+.|.++.+.+.++.....+ ..-+.+.|+|  +++.+++..         
T Consensus       139 ~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p--~~~~mvsS~wg~p~~~~~  215 (462)
T 2ece_A          139 RLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL--PNEVLVSSEWAVPNTIED  215 (462)
T ss_dssp             EEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET--TTTEEEECBCCCHHHHTT
T ss_pred             cccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC--CCCEEEEccCcCcccccc
Confidence            34556788999 77766555      78999999999999988643322 1235688899  889888885         


Q ss_pred             ----------cCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC
Q 021291           84 ----------RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK  153 (314)
Q Consensus        84 ----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (314)
                                .+.+|.+||+.+++...    ++...........+.                                  
T Consensus       216 g~~~~~~~~~~~d~V~v~D~~~~k~~~----tI~vg~~g~~P~~i~----------------------------------  257 (462)
T 2ece_A          216 GLKLEHLKDRYGNRIHFWDLRKRKRIH----SLTLGEENRMALELR----------------------------------  257 (462)
T ss_dssp             CCCTTTHHHHSCCEEEEEETTTTEEEE----EEESCTTEEEEEEEE----------------------------------
T ss_pred             ccchhhhhhccCCEEEEEECCCCcEee----EEecCCCCCccceeE----------------------------------
Confidence                      36899999999875432    222211011111110                                  


Q ss_pred             ceeccCCCceEEEeec-----CcCeEEEEecCCCce--eeeecccccCCCCCc-C------CCCCceeeeEEEecCCCCC
Q 021291          154 DDVPAEGPKYMAVAGE-----QLSEVEIWDLNTAER--CTRLHQNSCGGSPNF-S------SKGRGMCMAVQAYLPSKSQ  219 (314)
Q Consensus       154 ~~~~~~~~~~~~~~g~-----~d~~i~vwd~~~~~~--~~~~~~~~~~~~~~h-~------~~~~~~~~~~~~~~p~~~~  219 (314)
                      ++++|++++.+++ +.     .+++|.+|....++.  ...+...... ..+. +      .........+. ++||   
T Consensus       258 f~~~Pdg~~aYV~-~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~-v~~~lp~~~~~f~~~~~~pa~I~-lS~D---  331 (462)
T 2ece_A          258 PLHDPTKLMGFIN-MVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEP-LEGNLPEILKPFKAVPPLVTDID-ISLD---  331 (462)
T ss_dssp             ECSSTTCCEEEEE-EEEETTTCCEEEEEEEEETTEEEEEEEEEECCEE-CCSSCCGGGGGGTEECCCCCCEE-ECTT---
T ss_pred             eeECCCCCEEEEE-EeeeccCCCceEEEEEecCCceeEEEEEeCCCcc-ccccccccccccccCCCceeEEE-ECCC---
Confidence            2368999887764 44     567888776654331  1111100000 0000 0      00013456676 9998   


Q ss_pred             CceEEEEeecCCcEEEEEccCCC--CceEeeecCC--------------cceEEEEEeCCCCeEEEec
Q 021291          220 GFVNVLAGYEDGSILVWDIRNPG--IPLTAMKVHL--------------EPVLCLSIDESCNGGISGG  271 (314)
Q Consensus       220 g~~~l~~g~~dg~i~vwd~~~~~--~~~~~~~~h~--------------~~v~~~~~~~~~~~l~s~s  271 (314)
                      |+++.++.-..+.|.+||+...+  +.+..+....              ..-..+.++++|++|+.+.
T Consensus       332 GrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          332 DKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             SCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            66455666667899999986433  3333333210              1257899999999998877

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.07  E-value=1.8e-07  Score=77.27  Aligned_cols=226  Identities=10%  Similarity=0.063  Sum_probs=128.4

Q ss_pred             CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeec
Q 021291           29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKT  108 (314)
Q Consensus        29 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~  108 (314)
                      ++..++.++.++.|..+|..+++.+.........  ......    .+..++.++.++.|..+|.++++...    ....
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~--~~~p~~----~~~~v~v~~~~g~l~~~d~~tG~~~W----~~~~  171 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEA--LSRPVV----SDGLVLIHTSNGQLQALNEADGAVKW----TVNL  171 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCC--CSCCEE----ETTEEEEECTTSEEEEEETTTCCEEE----EEEC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCce--EcCCEE----ECCEEEEEcCCCeEEEEECCCCcEEE----EEeC
Confidence            4557888889999999999999988877654321  111122    23578888889999999999987644    2221


Q ss_pred             ceeeEE---Eeeeee-ccccccccCCCCcceeeccCCceeeec-CCCCC---------Cceec--cCCCceEEEeecCcC
Q 021291          109 NSYHFC---KLSLVK-EPYANAKQANEPKDCYEREVGETVDTD-SLCDS---------KDDVP--AEGPKYMAVAGEQLS  172 (314)
Q Consensus       109 ~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---------~~~~~--~~~~~~~~~~g~~d~  172 (314)
                      ......   ...+.. ..........+....++...++..-.. .....         .+.-.  ..+..+++  ++.++
T Consensus       172 ~~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~--~~~~g  249 (376)
T 3q7m_A          172 DMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFA--LAYNG  249 (376)
T ss_dssp             CC-----CCCCCCEEETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEE--ECTTS
T ss_pred             CCCceeecCCCCcEEECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEE--EecCc
Confidence            111000   000000 111111111223334444444432211 11100         00011  12334443  44578


Q ss_pred             eEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeec-C
Q 021291          173 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV-H  251 (314)
Q Consensus       173 ~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~-h  251 (314)
                      .+..+|.++++.+.....             . ....+. ..     +. .++.++.++.|..+|..+ ++.+..... .
T Consensus       250 ~l~~~d~~tG~~~w~~~~-------------~-~~~~~~-~~-----~~-~l~~~~~~g~l~~~d~~t-G~~~w~~~~~~  307 (376)
T 3q7m_A          250 NLTALDLRSGQIMWKREL-------------G-SVNDFI-VD-----GN-RIYLVDQNDRVMALTIDG-GVTLWTQSDLL  307 (376)
T ss_dssp             CEEEEETTTCCEEEEECC-------------C-CEEEEE-EE-----TT-EEEEEETTCCEEEEETTT-CCEEEEECTTT
T ss_pred             EEEEEECCCCcEEeeccC-------------C-CCCCce-EE-----CC-EEEEEcCCCeEEEEECCC-CcEEEeecccC
Confidence            999999999987766541             1 122222 32     22 677888899999999998 776655542 2


Q ss_pred             CcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEee
Q 021291          252 LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFG  290 (314)
Q Consensus       252 ~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~  290 (314)
                      ...+.......  ..|+.++.+|.|.++|.++++.++..
T Consensus       308 ~~~~~~~~~~~--~~l~v~~~~g~l~~~d~~tG~~~~~~  344 (376)
T 3q7m_A          308 HRLLTSPVLYN--GNLVVGDSEGYLHWINVEDGRFVAQQ  344 (376)
T ss_dssp             TSCCCCCEEET--TEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCcccCCEEEC--CEEEEEeCCCeEEEEECCCCcEEEEE
Confidence            22233333333  36888889999999999999987753

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.07  E-value=3.7e-08  Score=75.54  Aligned_cols=194  Identities=9%  Similarity=0.031  Sum_probs=124.6

Q ss_pred             CceEEecCCCCc--eeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC
Q 021291            9 DPVAVLRGHRAS--VTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (314)
Q Consensus         9 ~~~~~l~~h~~~--v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg   86 (314)
                      +.++++ .|...  ...+.|+ ++.++.+.+.+|.|+++|+++++.+..+ .... ..-..+++..  + ...+..-.++
T Consensus        44 ~Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~-~FgeGit~~g--~-~Ly~ltw~~~  116 (268)
T 3nok_A           44 HIIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGN-IFAEGLASDG--E-RLYQLTWTEG  116 (268)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTT-CCEEEEEECS--S-CEEEEESSSC
T ss_pred             EEEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCC-cceeEEEEeC--C-EEEEEEccCC
Confidence            445566 35443  3688887 4667788888999999999999988877 3321 1123455544  3 4444555689


Q ss_pred             eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEE
Q 021291           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV  166 (314)
Q Consensus        87 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (314)
                      .+.+||.++.+.+.    ++......                                         ..++++++.++++
T Consensus       117 ~v~V~D~~Tl~~~~----ti~~~~eG-----------------------------------------wGLt~Dg~~L~vS  151 (268)
T 3nok_A          117 LLFTWSGMPPQRER----TTRYSGEG-----------------------------------------WGLCYWNGKLVRS  151 (268)
T ss_dssp             EEEEEETTTTEEEE----EEECSSCC-----------------------------------------CCEEEETTEEEEE
T ss_pred             EEEEEECCcCcEEE----EEeCCCce-----------------------------------------eEEecCCCEEEEE
Confidence            99999999987544    22211100                                         2355777777765


Q ss_pred             eecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceE
Q 021291          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (314)
Q Consensus       167 ~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~  246 (314)
                      .|  ++.|.++|..+.+.+.++....      +.. .-.....+. |. +   |+ +.+....+..|.+.|.++ ++.+.
T Consensus       152 dG--s~~l~~iDp~T~~v~~~I~V~~------~g~-~v~~lNeLe-~~-d---G~-lyanvw~s~~I~vIDp~T-G~V~~  215 (268)
T 3nok_A          152 DG--GTMLTFHEPDGFALVGAVQVKL------RGQ-PVELINELE-CA-N---GV-IYANIWHSSDVLEIDPAT-GTVVG  215 (268)
T ss_dssp             CS--SSEEEEECTTTCCEEEEEECEE------TTE-ECCCEEEEE-EE-T---TE-EEEEETTCSEEEEECTTT-CBEEE
T ss_pred             CC--CCEEEEEcCCCCeEEEEEEeCC------CCc-ccccccccE-Ee-C---CE-EEEEECCCCeEEEEeCCC-CcEEE
Confidence            43  5899999999999888776311      111 011223344 54 2   54 555555788999999998 88877


Q ss_pred             eeecC-------------CcceEEEEEeCCCCeE-EEe
Q 021291          247 AMKVH-------------LEPVLCLSIDESCNGG-ISG  270 (314)
Q Consensus       247 ~~~~h-------------~~~v~~~~~~~~~~~l-~s~  270 (314)
                      .+...             .+-.+.|+++|++..| +||
T Consensus       216 ~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          216 VIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             EEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             EEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            76632             1356889999876555 554

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.07  E-value=2.3e-07  Score=70.54  Aligned_cols=196  Identities=9%  Similarity=0.036  Sum_probs=124.4

Q ss_pred             CceEEecCCCC--ceeEEEEccCCCEEEEecCCC--eEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeec
Q 021291            9 DPVAVLRGHRA--SVTDVCFHQTKPILFAGTTGG--ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (314)
Q Consensus         9 ~~~~~l~~h~~--~v~~~~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (314)
                      +.+.++ .|..  -...+.|++ +.++.+.+.+|  .|+++|+.+++.+..+...... .-..+++..  + ......-.
T Consensus        10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~-fgeGi~~~~--~-~ly~ltw~   83 (243)
T 3mbr_X           10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPY-FGAGIVAWR--D-RLIQLTWR   83 (243)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTC-CEEEEEEET--T-EEEEEESS
T ss_pred             EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCc-ceeEEEEeC--C-EEEEEEee
Confidence            456666 4654  356899986 56666666654  8999999999999888755421 123444433  2 44445556


Q ss_pred             CCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceE
Q 021291           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM  164 (314)
Q Consensus        85 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (314)
                      ++.+.+||..+.+.+.    ++......                                         ..+++++..++
T Consensus        84 ~~~v~v~D~~tl~~~~----ti~~~~~G-----------------------------------------wglt~dg~~L~  118 (243)
T 3mbr_X           84 NHEGFVYDLATLTPRA----RFRYPGEG-----------------------------------------WALTSDDSHLY  118 (243)
T ss_dssp             SSEEEEEETTTTEEEE----EEECSSCC-----------------------------------------CEEEECSSCEE
T ss_pred             CCEEEEEECCcCcEEE----EEeCCCCc-----------------------------------------eEEeeCCCEEE
Confidence            8999999999887544    22211100                                         23556777777


Q ss_pred             EEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCc
Q 021291          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (314)
Q Consensus       165 ~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~  244 (314)
                      ++-|  ++.|.++|..+.+.+.++....      +..+. .....+. +. +   |+ +.+....+..|.+.|.++ ++.
T Consensus       119 vSdg--s~~l~~iDp~t~~~~~~I~V~~------~g~~~-~~lNeLe-~~-~---G~-lyanvw~s~~I~vIDp~t-G~V  182 (243)
T 3mbr_X          119 MSDG--TAVIRKLDPDTLQQVGSIKVTA------GGRPL-DNLNELE-WV-N---GE-LLANVWLTSRIARIDPAS-GKV  182 (243)
T ss_dssp             EECS--SSEEEEECTTTCCEEEEEECEE------TTEEC-CCEEEEE-EE-T---TE-EEEEETTTTEEEEECTTT-CBE
T ss_pred             EECC--CCeEEEEeCCCCeEEEEEEEcc------CCccc-ccceeeE-Ee-C---CE-EEEEECCCCeEEEEECCC-CCE
Confidence            6544  5889999999999888776310      11111 1223333 43 2   55 455555677999999998 888


Q ss_pred             eEeeecC-------------CcceEEEEEeCCCCeEEEec
Q 021291          245 LTAMKVH-------------LEPVLCLSIDESCNGGISGG  271 (314)
Q Consensus       245 ~~~~~~h-------------~~~v~~~~~~~~~~~l~s~s  271 (314)
                      +..+...             .+-.+.|+++|++..|+..+
T Consensus       183 ~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          183 VAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             EEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             EEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            7776621             13568899999766554443

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.04  E-value=7.4e-08  Score=79.62  Aligned_cols=198  Identities=14%  Similarity=0.102  Sum_probs=119.2

Q ss_pred             cCCCEEE-EecCCCeEEEEeCCCC----eEEEEEec---c--CCcccEEEEEEcccCCCCeEEEeecC------CeEEEE
Q 021291           28 QTKPILF-AGTTGGELRIWDTVQH----RTVSSSWV---H--SAAHGIVSVATGPSIGLNKVISQGRD------GTVKCW   91 (314)
Q Consensus        28 ~~~~~l~-s~~~dg~v~iwd~~~~----~~~~~~~~---~--~~~~~v~~~~~~~~~~~~~l~s~~~d------g~v~iw   91 (314)
                      +++++|+ ++..++.|.|+|+.+.    +...+++.   .  .+...-..+...|  ++ .++++..+      |.|.+.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p--dG-i~Vs~~g~~~g~~~g~v~vl  169 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP--DA-IYISALGNEEGEGPGGILML  169 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS--SC-EEEEEEEETTSCSCCEEEEE
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC--Ce-EEEEcCCCcCCCCCCeEEEE
Confidence            7777665 5677889999998755    66666631   0  0112356678889  87 77776655      789999


Q ss_pred             eCCCCCCCCCCeeeeecceee-EEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEee--
Q 021291           92 DIENGGLSSNPSLTIKTNSYH-FCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG--  168 (314)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--  168 (314)
                      |.++.+.+.    +....... ...+                                    ++-|+|+++.++ ++.  
T Consensus       170 D~~T~~v~~----~~~~~~~~~~~~Y------------------------------------d~~~~p~~~~mv-sS~wg  208 (462)
T 2ece_A          170 DHYSFEPLG----KWEIDRGDQYLAY------------------------------------DFWWNLPNEVLV-SSEWA  208 (462)
T ss_dssp             CTTTCCEEE----ECCSBCTTCCCCC------------------------------------CEEEETTTTEEE-ECBCC
T ss_pred             ECCCCeEEE----EEccCCCCccccc------------------------------------eEEECCCCCEEE-EccCc
Confidence            999887543    22111000 0000                                    033688887444 332  


Q ss_pred             ----------------cCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEE-EecCCCCCCceEEEEee---
Q 021291          169 ----------------EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQ-AYLPSKSQGFVNVLAGY---  228 (314)
Q Consensus       169 ----------------~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~-~~~p~~~~g~~~l~~g~---  228 (314)
                                      ..+.+|.+||+.+++.+.++..       +.   .......+. +|+|+   ++..++++-   
T Consensus       209 ~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v-------g~---~g~~P~~i~f~~~Pd---g~~aYV~~e~~~  275 (462)
T 2ece_A          209 VPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL-------GE---ENRMALELRPLHDPT---KLMGFINMVVSL  275 (462)
T ss_dssp             CHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEES-------CT---TEEEEEEEEECSSTT---CCEEEEEEEEET
T ss_pred             CccccccccchhhhhhccCCEEEEEECCCCcEeeEEec-------CC---CCCccceeEeeECCC---CCEEEEEEeeec
Confidence                            2358999999999888777763       10   112333333 15887   553444444   


Q ss_pred             --cCCcEEEEEccCCCCc--eEee--ec----------------CCcceEEEEEeCCCCeEEEec-CCCcEEEEecCC
Q 021291          229 --EDGSILVWDIRNPGIP--LTAM--KV----------------HLEPVLCLSIDESCNGGISGG-ADQKIVLYNLDH  283 (314)
Q Consensus       229 --~dg~i~vwd~~~~~~~--~~~~--~~----------------h~~~v~~~~~~~~~~~l~s~s-~dg~i~iw~~~~  283 (314)
                        .+++|.+|..+. +..  .+.+  ..                -......|.+++|+++|..+. ..+.|.+||+..
T Consensus       276 ~~Lss~V~v~~~d~-g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d  352 (462)
T 2ece_A          276 KDLSSSIWLWFYED-GKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISN  352 (462)
T ss_dssp             TTCCEEEEEEEEET-TEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred             cCCCceEEEEEecC-CceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence              677888776654 321  1111  00                013467899999999885554 478999999863

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.04  E-value=1.8e-07  Score=75.06  Aligned_cols=214  Identities=10%  Similarity=0.001  Sum_probs=119.2

Q ss_pred             cEEEEEEcccCCCCeEEE-------eecCCeEEEEeCCCCCCCCCCeeee-----ecceeeEEEeeeeeccccccccCCC
Q 021291           64 GIVSVATGPSIGLNKVIS-------QGRDGTVKCWDIENGGLSSNPSLTI-----KTNSYHFCKLSLVKEPYANAKQANE  131 (314)
Q Consensus        64 ~v~~~~~~~~~~~~~l~s-------~~~dg~v~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  131 (314)
                      ...+++|.+  ++..+++       ...++.|.+||..+++...   +..     .........+.... ..........
T Consensus        19 ~~~~~~~~~--~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~---~~~~~~~~~~~~~~~i~~~~~~-g~l~v~~~~~   92 (314)
T 1pjx_A           19 GAEGPVFDK--NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTV---ICKPEVNGYGGIPAGCQCDRDA-NQLFVADMRL   92 (314)
T ss_dssp             TCEEEEECT--TSCEEEEETTCEETTEECCEEEEECTTTCCEEE---EECCEETTEECCEEEEEECSSS-SEEEEEETTT
T ss_pred             CccCceECC--CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEE---EEecccCCCCCCCceEEEecCC-CcEEEEECCC
Confidence            368999998  8887777       6778999999988775421   111     00111111111110 1111111122


Q ss_pred             CcceeeccCCceeee-c--CCCC----CC-ceeccCCCceEEEeecCc---------------CeEEEEecCCCceeeee
Q 021291          132 PKDCYEREVGETVDT-D--SLCD----SK-DDVPAEGPKYMAVAGEQL---------------SEVEIWDLNTAERCTRL  188 (314)
Q Consensus       132 ~~~~~~~~~~~~~~~-~--~~~~----~~-~~~~~~~~~~~~~~g~~d---------------~~i~vwd~~~~~~~~~~  188 (314)
                      ....++.. +..... .  ....    .. ++++++|. ++++ ...+               +.|..||.. ++.....
T Consensus        93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~  168 (314)
T 1pjx_A           93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWIT-APAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD  168 (314)
T ss_dssp             EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEE-ECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE
T ss_pred             CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC-EEEE-ecCcccccccccccccCCCCeEEEECCC-CCEEEec
Confidence            33344444 332211 1  1111    11 88889885 4433 3323               567888765 4433222


Q ss_pred             cccccCCCCCcCCCCCceeeeEEEec----CCCCCCceEEEEeecCCcEEEEEccCCCC-----ceEeeecCC-cceEEE
Q 021291          189 HQNSCGGSPNFSSKGRGMCMAVQAYL----PSKSQGFVNVLAGYEDGSILVWDIRNPGI-----PLTAMKVHL-EPVLCL  258 (314)
Q Consensus       189 ~~~~~~~~~~h~~~~~~~~~~~~~~~----p~~~~g~~~l~~g~~dg~i~vwd~~~~~~-----~~~~~~~h~-~~v~~~  258 (314)
                      .         +    ......+. ++    |+   ++.++++...++.|.+||.+..+.     ....+..+. ..+..+
T Consensus       169 ~---------~----~~~~~~i~-~~~~~d~d---g~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i  231 (314)
T 1pjx_A          169 T---------A----FQFPNGIA-VRHMNDGR---PYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGM  231 (314)
T ss_dssp             E---------E----ESSEEEEE-EEECTTSC---EEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEE
T ss_pred             c---------C----CCCcceEE-EecccCCC---CCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCce
Confidence            2         1    11234555 88    87   542455556788999999862133     223333443 567889


Q ss_pred             EEeCCCCeEEEecCCCcEEEEecCCCeeeEe-------eeeeeecCCCc-eece
Q 021291          259 SIDESCNGGISGGADQKIVLYNLDHSTYVLF-------GIGFVCDQEGN-KFGT  304 (314)
Q Consensus       259 ~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~-------~~~~~~~~~~~-~~~~  304 (314)
                      +++++|+++++...++.|.+||.++++.+..       ..++.++++|. ++.+
T Consensus       232 ~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~  285 (314)
T 1pjx_A          232 DFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVT  285 (314)
T ss_dssp             EEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred             EECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEE
Confidence            9999999888877788999999986654332       34456677776 4443

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.00  E-value=2.8e-08  Score=88.40  Aligned_cols=58  Identities=19%  Similarity=0.251  Sum_probs=46.1

Q ss_pred             CcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEee
Q 021291          231 GSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFG  290 (314)
Q Consensus       231 g~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~  290 (314)
                      |.|..||+.+ ++.+..+.. ..++....+...+..++.++.||.+++||.++++.++.+
T Consensus       457 g~l~A~D~~t-G~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~  514 (677)
T 1kb0_A          457 GRLLAWDPVA-QKAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEA  514 (677)
T ss_dssp             EEEEEEETTT-TEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cEEEEEeCCC-CcEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeee
Confidence            7899999998 777776653 344555556666778888999999999999999998864

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.00  E-value=1.7e-07  Score=76.51  Aligned_cols=232  Identities=10%  Similarity=-0.034  Sum_probs=127.7

Q ss_pred             CCCCceeEEEEccCCCEEEEecC-----CCeEEEEeCCCCeEEEEEeccCC----cccEEEEEEcccCCCCeE-EEee--
Q 021291           16 GHRASVTDVCFHQTKPILFAGTT-----GGELRIWDTVQHRTVSSSWVHSA----AHGIVSVATGPSIGLNKV-ISQG--   83 (314)
Q Consensus        16 ~h~~~v~~~~~~~~~~~l~s~~~-----dg~v~iwd~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l-~s~~--   83 (314)
                      +|...+..++++++++++++-..     ++.|.+||+.+++.+..+.....    ...+..+++.+  ++..+ ++-.  
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~--~~g~~yvtd~~~  141 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDL--IHNFVYISDPAP  141 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEET--TTTEEEEEECCS
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEec--CCCEEEEEcCcc
Confidence            46678999999999877665443     57899999999988777754321    12368899997  54444 4544  


Q ss_pred             -cCCeEEEEeCCCCCCCCCCeeeeecceee-EEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCC
Q 021291           84 -RDGTVKCWDIENGGLSSNPSLTIKTNSYH-FCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGP  161 (314)
Q Consensus        84 -~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (314)
                       .++.|.+||+.+++...  .+..+..... ...+.+.+..... ....+....+           ..+-..++|+|+++
T Consensus       142 ~~~~~i~v~d~~~g~~~r--~~~~~~~~~~~~~~~~~~g~~~~~-~~~~g~~~~~-----------~~~~~gia~s~dg~  207 (343)
T 2qe8_A          142 DDKAALIRVDLQTGLAAR--VLQGYPGIAPEDIDLVIDGVPVQI-GQPDGTVIRP-----------HLGVNGIVLDAENE  207 (343)
T ss_dssp             GGGCEEEEEETTTCCEEE--ECTTCTTTSCCSCCCEETTEECBE-ECTTSCEECC-----------CCCEEEEEECTTSC
T ss_pred             CCCCeEEEEECCCCCEEE--EecCCCcccccccceeECCEEEEe-ccCCCceece-----------ecccceeEeccCCC
Confidence             67899999998775322  1100000000 0001110000000 0000000000           00011188999998


Q ss_pred             ceEEEeecCcCeEEEEecC---CCc-----eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcE
Q 021291          162 KYMAVAGEQLSEVEIWDLN---TAE-----RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI  233 (314)
Q Consensus       162 ~~~~~~g~~d~~i~vwd~~---~~~-----~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i  233 (314)
                      .++++ ....+.+..++..   .+.     ....+...      ++    .+....++ ++++   |. ++++...++.|
T Consensus       208 ~ly~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------g~----~g~pdgia-~d~~---G~-l~va~~~~~~V  271 (343)
T 2qe8_A          208 WLYLS-PMHSTSMYRIKSADLSNLQLTDAELGSKIERY------SE----KPICDGIS-IDKD---HN-IYVGDLAHSAI  271 (343)
T ss_dssp             EEEEE-ESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEE------EE----CCSCSCEE-ECTT---CC-EEEEEGGGTEE
T ss_pred             EEEEE-eCCCCeEEEEEHHHhcCCCCChhhhhcceEec------cc----CCCCceEE-ECCC---CC-EEEEccCCCeE
Confidence            77653 3333456665532   111     00000000      11    11233454 8887   65 77888888999


Q ss_pred             EEEEccCCCCceEeeec-CCcceEEEEEeCCCCeEEEecCCCcEEEEe
Q 021291          234 LVWDIRNPGIPLTAMKV-HLEPVLCLSIDESCNGGISGGADQKIVLYN  280 (314)
Q Consensus       234 ~vwd~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~  280 (314)
                      .+||..+ ++....... +...+.+++|++++.++++.+..+.+.+|.
T Consensus       272 ~~~d~~~-G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~  318 (343)
T 2qe8_A          272 GVITSAD-RAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN  318 (343)
T ss_dssp             EEEETTT-TEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred             EEEECCC-CCEEEEEECCceecCCeeEECCCCcEEEEeCccccccccc
Confidence            9999844 443322221 245689999999998888887666665554

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.98  E-value=2.6e-10  Score=94.12  Aligned_cols=188  Identities=13%  Similarity=0.092  Sum_probs=98.1

Q ss_pred             CCCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccC-CCCeEEEeec
Q 021291            6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSI-GLNKVISQGR   84 (314)
Q Consensus         6 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~   84 (314)
                      ..++.+..++.  +.+.+..+..++..+++++.||.|+.||..+++.+..+..+.. ..+.   -+|.. ++..+++++.
T Consensus        27 ~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~-~~~~---~sp~~~~~~~v~~g~~  100 (369)
T 2hz6_A           27 RTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIP-ELVQ---ASPCRSSDGILYMGKK  100 (369)
T ss_dssp             TTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHH-HHHT---TCSCC-----CCCCEE
T ss_pred             CCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCc-cccc---cCceEecCCEEEEEeC
Confidence            34567777765  5566666667787888889999999999998887766644321 1111   11110 3357788889


Q ss_pred             CCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceE
Q 021291           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM  164 (314)
Q Consensus        85 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (314)
                      |+.|..||.++++..+    .......                                          ..++|++..++
T Consensus       101 dg~v~a~D~~tG~~~w----~~~~~~~------------------------------------------~~~~p~~~~v~  134 (369)
T 2hz6_A          101 QDIWYVIDLLTGEKQQ----TLSSAFA------------------------------------------DSLSPSTSLLY  134 (369)
T ss_dssp             EEEEEEECCC--------------------------------------------------------------------EE
T ss_pred             CCEEEEEECCCCcEEE----EecCCCc------------------------------------------ccccccCCEEE
Confidence            9999999999998755    2211110                                          11345555444


Q ss_pred             EEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCc
Q 021291          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (314)
Q Consensus       165 ~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~  244 (314)
                        .++.|+.|+.||.++++.+..+..        +      ...... +.++...+. .+++++.||.|+.||.++ ++.
T Consensus       135 --~~~~dg~v~a~d~~tG~~~W~~~~--------~------~~~~~~-~~~~~~~~~-~v~~~~~dg~v~a~d~~t-G~~  195 (369)
T 2hz6_A          135 --LGRTEYTITMYDTKTRELRWNATY--------F------DYAASL-PEDDVDYKM-SHFVSNGDGLVVTVDSES-GDV  195 (369)
T ss_dssp             --EEEEEEEEECCCSSSSSCCCEEEE--------E------EECCBC-CCCCTTCCC-CEEEEETSCEEEEECTTT-CCE
T ss_pred             --EEecCCEEEEEECCCCCEEEeEec--------c------cccCcc-ccCCccccc-eEEEECCCCEEEEEECCC-CcE
Confidence              355579999999999987766542        1      011111 333210012 577788999999999998 777


Q ss_pred             eEeeecCCcceEE-EEEeCCCC
Q 021291          245 LTAMKVHLEPVLC-LSIDESCN  265 (314)
Q Consensus       245 ~~~~~~h~~~v~~-~~~~~~~~  265 (314)
                      +..... ..++.. ..+++++.
T Consensus       196 ~W~~~~-~~pv~~~~~~~~dg~  216 (369)
T 2hz6_A          196 LWIQNY-ASPVVAFYVWQREGL  216 (369)
T ss_dssp             EEEEEC-SSCEEEEEECTTSSC
T ss_pred             EEEecC-CCceEEEEEecCCce
Confidence            776663 445544 33456664

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.95  E-value=1.1e-07  Score=77.86  Aligned_cols=63  Identities=11%  Similarity=-0.167  Sum_probs=49.6

Q ss_pred             EEEEecCCC----eEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEee----------cCCeEEEEeCCCCC
Q 021291           32 ILFAGTTGG----ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG----------RDGTVKCWDIENGG   97 (314)
Q Consensus        32 ~l~s~~~dg----~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----------~dg~v~iwd~~~~~   97 (314)
                      .+++-..++    +|.+.|..+++.+.++....  .+  .+.++|  |+++++.+.          .+++|.+||+.+++
T Consensus        34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~--~P--~i~~sp--Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~  107 (368)
T 1mda_H           34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAF--LS--LAVAGH--SGSDFALASTSFARSAKGKRTDYVEVFDPVTFL  107 (368)
T ss_dssp             EEEEECTTTCSSEEEEEEETTTTEEEEEEEECT--TC--EEEECT--TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC
T ss_pred             EEEECCccCCccceEEEEECCCCeEEEEEeCCC--CC--ceEECC--CCCEEEEEcccccccccCCCCCEEEEEECCCCC
Confidence            344444444    88899999999999987665  34  799999  999998876          47899999999987


Q ss_pred             CCC
Q 021291           98 LSS  100 (314)
Q Consensus        98 ~~~  100 (314)
                      .+.
T Consensus       108 vv~  110 (368)
T 1mda_H          108 PIA  110 (368)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.94  E-value=1.6e-07  Score=84.10  Aligned_cols=200  Identities=8%  Similarity=-0.016  Sum_probs=120.8

Q ss_pred             eEEEEccCCCEEEEecCCC-------------eEEEEeCCCCeE--EEEEeccC-CcccEEEEEEcccCCCCeEEEeec-
Q 021291           22 TDVCFHQTKPILFAGTTGG-------------ELRIWDTVQHRT--VSSSWVHS-AAHGIVSVATGPSIGLNKVISQGR-   84 (314)
Q Consensus        22 ~~~~~~~~~~~l~s~~~dg-------------~v~iwd~~~~~~--~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~-   84 (314)
                      ..++|+ ||+.|+.++.+.             .|++|++.++..  ...+.... +...+..+.|+|  |+++|+.... 
T Consensus       178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp--Dg~~l~~~~~~  254 (693)
T 3iuj_A          178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE--DDRFLLISAAN  254 (693)
T ss_dssp             CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT--TSCEEEEEEES
T ss_pred             ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC--CCCEEEEEEcc
Confidence            578999 999998887774             499999987542  22333221 123478899999  9998764332 


Q ss_pred             ---CCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCC
Q 021291           85 ---DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGP  161 (314)
Q Consensus        85 ---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (314)
                         +..|.++|+.++....   ..+........                                       ..++++|+
T Consensus       255 ~~~~~~i~~~d~~~~~~~~---~~l~~~~~~~~---------------------------------------~~~~~~g~  292 (693)
T 3iuj_A          255 STSGNRLYVKDLSQENAPL---LTVQGDLDADV---------------------------------------SLVDNKGS  292 (693)
T ss_dssp             SSSCCEEEEEETTSTTCCC---EEEECSSSSCE---------------------------------------EEEEEETT
T ss_pred             CCCCcEEEEEECCCCCCce---EEEeCCCCceE---------------------------------------EEEeccCC
Confidence               3589999998764211   11111100000                                       11556677


Q ss_pred             ceEEEeecC--cCeEEEEecCCCce--eeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCC--cEEE
Q 021291          162 KYMAVAGEQ--LSEVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG--SILV  235 (314)
Q Consensus       162 ~~~~~~g~~--d~~i~vwd~~~~~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg--~i~v  235 (314)
                      .+++.+...  .+.|..+|+.++..  ...+.        .|..    ...  . |+|+   ++.++++...++  .|++
T Consensus       293 ~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~--------~~~~----~~~--~-~s~~---g~~lv~~~~~~g~~~l~~  354 (693)
T 3iuj_A          293 TLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI--------PERQ----QVL--T-VHSG---SGYLFAEYMVDATARVEQ  354 (693)
T ss_dssp             EEEEEECTTCTTCEEEEEETTSCCGGGCEEEE--------CCCS----SCE--E-EEEE---TTEEEEEEEETTEEEEEE
T ss_pred             EEEEEECCCCCCCEEEEEeCCCCCccccEEEe--------cCCC----CEE--E-EEEE---CCEEEEEEEECCeeEEEE
Confidence            776655331  36899999987654  23444        3322    122  4 8887   442445555555  6888


Q ss_pred             EEccCCCCceEeee-cCCcceEEEEEeCCCCeEEEecCC----CcEEEEecCCCee
Q 021291          236 WDIRNPGIPLTAMK-VHLEPVLCLSIDESCNGGISGGAD----QKIVLYNLDHSTY  286 (314)
Q Consensus       236 wd~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~d----g~i~iw~~~~~~~  286 (314)
                      ||+..  .....+. .....+..+.+++++..|+....+    +.|..||+.+++.
T Consensus       355 ~d~~g--~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          355 FDYEG--KRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI  408 (693)
T ss_dssp             ECTTS--CEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred             EECCC--CeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence            88873  3444443 234567777788888766554443    7899999987753

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.91  E-value=1.4e-06  Score=67.51  Aligned_cols=171  Identities=9%  Similarity=-0.033  Sum_probs=108.9

Q ss_pred             eEEEEEeccCCcccEEEEEEcccCCCCeEEEeec--CCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeecccccccc
Q 021291           51 RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR--DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQ  128 (314)
Q Consensus        51 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (314)
                      +.+.++. |........+.|++  ++.++++.+.  ++.|+++|+.+++...  .+.+......                
T Consensus        10 ~vv~~~p-~~~~~f~~Gl~~~~--dg~Lyvstg~~~~s~v~~iD~~tg~v~~--~i~l~~~~fg----------------   68 (266)
T 2iwa_A           10 EVLNEFP-HDPYAFTQGLVYAE--NDTLFESTGLYGRSSVRQVALQTGKVEN--IHKMDDSYFG----------------   68 (266)
T ss_dssp             EEEEEEE-CCTTCCEEEEEECS--TTEEEEEECSTTTCEEEEEETTTCCEEE--EEECCTTCCE----------------
T ss_pred             eEEEEEE-CCCCCCcccEEEeC--CCeEEEECCCCCCCEEEEEECCCCCEEE--EEecCCCcce----------------
Confidence            4455553 33223468999999  8655555443  5799999999997644  1111111111                


Q ss_pred             CCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceee
Q 021291          129 ANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCM  208 (314)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  208 (314)
                                               ..+..+++.+++ +.-.++.+.++|..+.+.+.+++.       + .  ..+  +
T Consensus        69 -------------------------eGi~~~g~~lyv-~t~~~~~v~viD~~t~~v~~~i~~-------g-~--~~g--~  110 (266)
T 2iwa_A           69 -------------------------EGLTLLNEKLYQ-VVWLKNIGFIYDRRTLSNIKNFTH-------Q-M--KDG--W  110 (266)
T ss_dssp             -------------------------EEEEEETTEEEE-EETTCSEEEEEETTTTEEEEEEEC-------C-S--SSC--C
T ss_pred             -------------------------EEEEEeCCEEEE-EEecCCEEEEEECCCCcEEEEEEC-------C-C--CCe--E
Confidence                                     112334556665 455689999999999999988873       2 0  112  2


Q ss_pred             eEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecC--Cc---ceEEEEEeCCCCeEEEecCCCcEEEEecCC
Q 021291          209 AVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH--LE---PVLCLSIDESCNGGISGGADQKIVLYNLDH  283 (314)
Q Consensus       209 ~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h--~~---~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~  283 (314)
                      .   ++++   |+.++++ ..++.|.++|..+ .+.+..+..-  ..   .++.+.|. +++..+....++.|.+.|..+
T Consensus       111 g---lt~D---g~~l~vs-~gs~~l~viD~~t-~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~t  181 (266)
T 2iwa_A          111 G---LATD---GKILYGS-DGTSILYEIDPHT-FKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKD  181 (266)
T ss_dssp             E---EEEC---SSSEEEE-CSSSEEEEECTTT-CCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTT
T ss_pred             E---EEEC---CCEEEEE-CCCCeEEEEECCC-CcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCC
Confidence            2   4455   4324444 4688999999988 6666666522  12   36788888 676666666788999999999


Q ss_pred             CeeeEe
Q 021291          284 STYVLF  289 (314)
Q Consensus       284 ~~~~~~  289 (314)
                      ++.+..
T Consensus       182 g~V~~~  187 (266)
T 2iwa_A          182 GTLLGW  187 (266)
T ss_dssp             CCEEEE
T ss_pred             CcEEEE
Confidence            986654

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.90  E-value=3.9e-07  Score=81.31  Aligned_cols=59  Identities=15%  Similarity=0.185  Sum_probs=46.1

Q ss_pred             CCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEee
Q 021291          230 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFG  290 (314)
Q Consensus       230 dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~  290 (314)
                      +|.|+.||+.+ ++.+..+..+. ++..-.+...+.+++.++.||.|+.||.++++.++..
T Consensus       454 ~g~l~A~D~~t-G~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~  512 (689)
T 1yiq_A          454 SGKLIAWDPVK-QQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQ  512 (689)
T ss_dssp             EEEEEEEETTT-TEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             ceeEEEEECCC-CCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceee
Confidence            37899999998 88777776543 3333355556668899999999999999999999864

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.90  E-value=2.2e-07  Score=79.52  Aligned_cols=224  Identities=13%  Similarity=0.052  Sum_probs=129.0

Q ss_pred             CCCEEEEecC-CCeEEEEeCCCCeEEEEEeccCCcccEEEEEE-c-ccCCCCeEEEee------------------cCCe
Q 021291           29 TKPILFAGTT-GGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT-G-PSIGLNKVISQG------------------RDGT   87 (314)
Q Consensus        29 ~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~~~l~s~~------------------~dg~   87 (314)
                      ||++|+.... ++.|.+.|+.+.++...+..... ..+..+++ . |  ++++++.++                  .++.
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g-~~phg~~~~~~p--~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~  176 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNA-KGIHGLRPQKWP--RSNYVFCNGEDETPLVNDGTNMEDVANYVNV  176 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSC-CSEEEEEECCSS--BCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCC-CCCcceeeeecC--CCcEEEEecccccccCCCCcccccccccCce
Confidence            7887766554 66799999999999886654432 33788888 4 7  888888874                  2457


Q ss_pred             EEEEeCCCCCCCCCCeeeeec-ceeeEEEeeeeeccccccccCCCCcceeeccCCceeee--cCCCCCCceeccCCCceE
Q 021291           88 VKCWDIENGGLSSNPSLTIKT-NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDT--DSLCDSKDDVPAEGPKYM  164 (314)
Q Consensus        88 v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  164 (314)
                      +.+.|.++.+...    ++.. .....+.+++.+................+.........  .........+.++|+...
T Consensus       177 vtvID~~t~~v~~----qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~  252 (595)
T 1fwx_A          177 FTAVDADKWEVAW----QVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE  252 (595)
T ss_dssp             EEEEETTTTEEEE----EEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred             EEEEECCCCeEEE----EEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeE
Confidence            8888988775533    2221 11122222222211111111111110000000000000  000000022445666544


Q ss_pred             EEeecCcCeEEEEecCC--Cce-eeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCC
Q 021291          165 AVAGEQLSEVEIWDLNT--AER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP  241 (314)
Q Consensus       165 ~~~g~~d~~i~vwd~~~--~~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~  241 (314)
                      +      +.|.+.|.++  ++. +..++.       +      ....++. ++||   |+..++++..+.+|.++|+.+.
T Consensus       253 i------~~V~VID~~~~~~~~~~~~Ipv-------g------~~PhGv~-~sPD---Gk~v~V~~~~s~~VsVid~~~~  309 (595)
T 1fwx_A          253 L------NGVKVVDGRKEASSLFTRYIPI-------A------NNPHGCN-MAPD---KKHLCVAGKLSPTVTVLDVTRF  309 (595)
T ss_dssp             E------TTEEEEECSGGGCCSSEEEEEE-------E------SSCCCEE-ECTT---SSEEEEECTTSSBEEEEEGGGH
T ss_pred             E------CcEEEEeCcccCCceeEEEEec-------C------CCceEEE-EcCC---CCEEEEeCCCCCeEEEEECccc
Confidence            2      3499999987  444 444542       1      1234454 9998   7767788888999999999852


Q ss_pred             C-----------CceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCC
Q 021291          242 G-----------IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH  283 (314)
Q Consensus       242 ~-----------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~  283 (314)
                      .           ..+..+.. ......++|+++|...++.-.|+.|.+||++.
T Consensus       310 ~~~~~~~l~~~~~v~~~v~v-G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          310 DAVFYENADPRSAVVAEPEL-GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             HHHHHSCCCGGGGEEECCBC-CSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             ccccccccCcccceEEEcCC-CCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence            1           12333332 34678999999995556777899999999987

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.89  E-value=1.5e-06  Score=66.70  Aligned_cols=168  Identities=12%  Similarity=0.051  Sum_probs=108.9

Q ss_pred             EEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC--eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccC
Q 021291           52 TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG--TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA  129 (314)
Q Consensus        52 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (314)
                      .+.++ .|........|.|+.   +.++.+.+.+|  .|+.+|+++++...  ...+......                 
T Consensus        33 vv~~~-phd~~~ftqGL~~~~---~~LyestG~~g~S~v~~vD~~Tgkv~~--~~~l~~~~Fg-----------------   89 (262)
T 3nol_A           33 IVHSY-PHDTKAFTEGFFYRN---GYFYESTGLNGRSSIRKVDIESGKTLQ--QIELGKRYFG-----------------   89 (262)
T ss_dssp             EEEEE-ECCTTCEEEEEEEET---TEEEEEEEETTEEEEEEECTTTCCEEE--EEECCTTCCE-----------------
T ss_pred             EEEEe-cCCCCcccceEEEEC---CEEEEECCCCCCceEEEEECCCCcEEE--EEecCCccce-----------------
Confidence            44555 355445568899874   46777777776  89999999997644  1111111100                 


Q ss_pred             CCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeee
Q 021291          130 NEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMA  209 (314)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  209 (314)
                                              ..+.++++.+++++. .++.+.+||..+.+.+.+++.             ...-+.
T Consensus        90 ------------------------eGit~~g~~ly~ltw-~~~~v~v~D~~t~~~~~ti~~-------------~~eG~g  131 (262)
T 3nol_A           90 ------------------------EGISDWKDKIVGLTW-KNGLGFVWNIRNLRQVRSFNY-------------DGEGWG  131 (262)
T ss_dssp             ------------------------EEEEEETTEEEEEES-SSSEEEEEETTTCCEEEEEEC-------------SSCCCC
T ss_pred             ------------------------eEEEEeCCEEEEEEe-eCCEEEEEECccCcEEEEEEC-------------CCCceE
Confidence                                    113344566766544 479999999999999999883             111223


Q ss_pred             EEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecC--C---cceEEEEEeCCCCeEEEecCCCcEEEEecCCC
Q 021291          210 VQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH--L---EPVLCLSIDESCNGGISGGADQKIVLYNLDHS  284 (314)
Q Consensus       210 ~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h--~---~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~  284 (314)
                         +.++   +. .|+....++.|.++|..+ .+.+..+...  .   ..++.+.|. +|+..+..-.++.|.+.|.+++
T Consensus       132 ---lt~d---g~-~L~~SdGs~~i~~iDp~T-~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG  202 (262)
T 3nol_A          132 ---LTHN---DQ-YLIMSDGTPVLRFLDPES-LTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETG  202 (262)
T ss_dssp             ---EEEC---SS-CEEECCSSSEEEEECTTT-CSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTC
T ss_pred             ---EecC---CC-EEEEECCCCeEEEEcCCC-CeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCC
Confidence               3344   33 455545578899999998 6777666532  2   234567786 6766666667889999999999


Q ss_pred             eeeEe
Q 021291          285 TYVLF  289 (314)
Q Consensus       285 ~~~~~  289 (314)
                      +.+..
T Consensus       203 ~V~~~  207 (262)
T 3nol_A          203 KVTGI  207 (262)
T ss_dssp             BEEEE
T ss_pred             cEEEE
Confidence            87654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.88  E-value=1.8e-06  Score=66.23  Aligned_cols=168  Identities=10%  Similarity=-0.015  Sum_probs=111.7

Q ss_pred             eEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCC
Q 021291           51 RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN  130 (314)
Q Consensus        51 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (314)
                      +.+.++ .|........|.|+.   +.++.+.+.+|.|+++|+++++...  .. +......                  
T Consensus        44 ~Vv~~~-phd~~~ftqGL~~~~---~~Ly~stG~~g~v~~iD~~Tgkv~~--~~-l~~~~Fg------------------   98 (268)
T 3nok_A           44 HIIREY-PHATNAFTQGLVFHQ---GHFFESTGHQGTLRQLSLESAQPVW--ME-RLGNIFA------------------   98 (268)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEET---TEEEEEETTTTEEEECCSSCSSCSE--EE-ECTTCCE------------------
T ss_pred             EEEEEE-cCCCccccceEEEEC---CEEEEEcCCCCEEEEEECCCCcEEe--EE-CCCCcce------------------
Confidence            344555 354445568899875   3777788889999999999998755  22 2221111                  


Q ss_pred             CCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeE
Q 021291          131 EPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAV  210 (314)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  210 (314)
                                             ..+.++++.+++++ -.++.+.+||..+.+.+.+++.             ...-+.+
T Consensus        99 -----------------------eGit~~g~~Ly~lt-w~~~~v~V~D~~Tl~~~~ti~~-------------~~eGwGL  141 (268)
T 3nok_A           99 -----------------------EGLASDGERLYQLT-WTEGLLFTWSGMPPQRERTTRY-------------SGEGWGL  141 (268)
T ss_dssp             -----------------------EEEEECSSCEEEEE-SSSCEEEEEETTTTEEEEEEEC-------------SSCCCCE
T ss_pred             -----------------------eEEEEeCCEEEEEE-ccCCEEEEEECCcCcEEEEEeC-------------CCceeEE
Confidence                                   01334556677654 4579999999999999999883             1112333


Q ss_pred             EEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeec--CCc---ceEEEEEeCCCCeEEEecCCCcEEEEecCCCe
Q 021291          211 QAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV--HLE---PVLCLSIDESCNGGISGGADQKIVLYNLDHST  285 (314)
Q Consensus       211 ~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~--h~~---~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~  285 (314)
                         .++   ++ .|+.+..++.|.++|..+ .+.+..+..  +..   .++.+.|. +|+..+..-.++.|.+.|.++++
T Consensus       142 ---t~D---g~-~L~vSdGs~~l~~iDp~T-~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~  212 (268)
T 3nok_A          142 ---CYW---NG-KLVRSDGGTMLTFHEPDG-FALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGT  212 (268)
T ss_dssp             ---EEE---TT-EEEEECSSSEEEEECTTT-CCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCB
T ss_pred             ---ecC---CC-EEEEECCCCEEEEEcCCC-CeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCc
Confidence               333   44 455555688999999998 677766653  222   45677887 66666666678899999999998


Q ss_pred             eeEe
Q 021291          286 YVLF  289 (314)
Q Consensus       286 ~~~~  289 (314)
                      .+..
T Consensus       213 V~~~  216 (268)
T 3nok_A          213 VVGV  216 (268)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.87  E-value=5.1e-06  Score=68.57  Aligned_cols=235  Identities=11%  Similarity=0.053  Sum_probs=129.1

Q ss_pred             CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCC-------cccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCC
Q 021291           29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA-------AHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSN  101 (314)
Q Consensus        29 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  101 (314)
                      ++..++.++.++.|..+|..+++.+........       ...+.+.-. .  ++..++.++.++.|..+|.++++... 
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~v~v~~~~g~l~a~d~~tG~~~W-  127 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVT-V--SGGHVYIGSEKAQVYALNTSDGTVAW-  127 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEE-E--ETTEEEEEETTSEEEEEETTTCCEEE-
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCce-E--eCCEEEEEcCCCEEEEEECCCCCEEE-
Confidence            456788888899999999999998877765321       112322222 2  34778888899999999999987644 


Q ss_pred             CeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeec-CCCC-------CCceeccCCCceEEEeecCcCe
Q 021291          102 PSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTD-SLCD-------SKDDVPAEGPKYMAVAGEQLSE  173 (314)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~~~~~~~~g~~d~~  173 (314)
                         .............. ...........+....++...++..-.. ....       ......  +..++  .+..++.
T Consensus       128 ---~~~~~~~~~~~p~~-~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~--~g~~~g~  199 (376)
T 3q7m_A          128 ---QTKVAGEALSRPVV-SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAV--VGGDNGR  199 (376)
T ss_dssp             ---EEECSSCCCSCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEE--ECCTTTE
T ss_pred             ---EEeCCCceEcCCEE-ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEE--EEcCCCE
Confidence               22211100000000 0111111122223333444444322211 1111       112222  23333  3556799


Q ss_pred             EEEEecCCCceeeeecccccCCCCCcCCCCC--ceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecC
Q 021291          174 VEIWDLNTAERCTRLHQNSCGGSPNFSSKGR--GMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH  251 (314)
Q Consensus       174 i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~--~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h  251 (314)
                      |..+|.++++.+......       ......  .....+. -.|.-. +. .++.++.++.|..+|.++ ++.+..... 
T Consensus       200 l~~~d~~tG~~~w~~~~~-------~~~~~~~~~~~~~~~-~~p~~~-~~-~v~~~~~~g~l~~~d~~t-G~~~w~~~~-  267 (376)
T 3q7m_A          200 VSAVLMEQGQMIWQQRIS-------QATGSTEIDRLSDVD-TTPVVV-NG-VVFALAYNGNLTALDLRS-GQIMWKREL-  267 (376)
T ss_dssp             EEEEETTTCCEEEEEECC-------C-----------CCC-CCCEEE-TT-EEEEECTTSCEEEEETTT-CCEEEEECC-
T ss_pred             EEEEECCCCcEEEEEecc-------cCCCCcccccccccC-CCcEEE-CC-EEEEEecCcEEEEEECCC-CcEEeeccC-
Confidence            999999999887666521       000000  0000000 111001 22 677788899999999998 776655442 


Q ss_pred             CcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEee
Q 021291          252 LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFG  290 (314)
Q Consensus       252 ~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~  290 (314)
                       .....+...  +..|+.++.++.|..+|..+++.++..
T Consensus       268 -~~~~~~~~~--~~~l~~~~~~g~l~~~d~~tG~~~w~~  303 (376)
T 3q7m_A          268 -GSVNDFIVD--GNRIYLVDQNDRVMALTIDGGVTLWTQ  303 (376)
T ss_dssp             -CCEEEEEEE--TTEEEEEETTCCEEEEETTTCCEEEEE
T ss_pred             -CCCCCceEE--CCEEEEEcCCCeEEEEECCCCcEEEee
Confidence             334455554  336777778999999999999887753

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.83  E-value=6.9e-06  Score=65.45  Aligned_cols=181  Identities=10%  Similarity=-0.032  Sum_probs=106.4

Q ss_pred             cEEEEEEcccCCCC-eEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCc
Q 021291           64 GIVSVATGPSIGLN-KVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE  142 (314)
Q Consensus        64 ~v~~~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (314)
                      -..+..|++  +.+ ++++...++.|..||..+++..     ..........                            
T Consensus        14 ~~Egp~w~~--~~~~l~~~d~~~~~i~~~d~~~~~~~-----~~~~~~~~~~----------------------------   58 (297)
T 3g4e_A           14 CGESPVWEE--VSNSLLFVDIPAKKVCRWDSFTKQVQ-----RVTMDAPVSS----------------------------   58 (297)
T ss_dssp             BEEEEEEET--TTTEEEEEETTTTEEEEEETTTCCEE-----EEECSSCEEE----------------------------
T ss_pred             cccCCeEEC--CCCEEEEEECCCCEEEEEECCCCcEE-----EEeCCCceEE----------------------------
Confidence            367889998  544 5556667889999999876431     1111111111                            


Q ss_pred             eeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCce
Q 021291          143 TVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFV  222 (314)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~  222 (314)
                                 ++++++|+ +++ +.  ++.|.+||..+++......        .........+..+. ++|+   |+.
T Consensus        59 -----------i~~~~dG~-l~v-~~--~~~l~~~d~~~g~~~~~~~--------~~~~~~~~~~~di~-~d~d---G~l  111 (297)
T 3g4e_A           59 -----------VALRQSGG-YVA-TI--GTKFCALNWKEQSAVVLAT--------VDNDKKNNRFNDGK-VDPA---GRY  111 (297)
T ss_dssp             -----------EEEBTTSS-EEE-EE--TTEEEEEETTTTEEEEEEE--------CCTTCSSEEEEEEE-ECTT---SCE
T ss_pred             -----------EEECCCCC-EEE-EE--CCeEEEEECCCCcEEEEEe--------cCCCCCCCCCCCEE-ECCC---CCE
Confidence                       55888887 444 22  4679999998776433222        11111223466776 8887   663


Q ss_pred             EEEEeec--------CCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeE-EEecCCCcEEEEecC--CCee----e
Q 021291          223 NVLAGYE--------DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGG-ISGGADQKIVLYNLD--HSTY----V  287 (314)
Q Consensus       223 ~l~~g~~--------dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~s~dg~i~iw~~~--~~~~----~  287 (314)
                      ++.+...        ...-.||.+...++. ..+..+....+.++|+|+++.| ++.+.++.|.+|+++  ++..    +
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~  190 (297)
T 3g4e_A          112 FAGTMAEETAPAVLERHQGALYSLFPDHHV-KKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRS  190 (297)
T ss_dssp             EEEEEECCSBTTBCCTTCEEEEEECTTSCE-EEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEE
T ss_pred             EEecCCcccccccccCCCcEEEEEECCCCE-EEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEE
Confidence            3333221        123455555432333 3333344567899999999865 566678899999974  4432    1


Q ss_pred             E--------eeeeeeecCCCceeceeec
Q 021291          288 L--------FGIGFVCDQEGNKFGTTWH  307 (314)
Q Consensus       288 ~--------~~~~~~~~~~~~~~~~~w~  307 (314)
                      +        ...+++.+++|.+..+.|.
T Consensus       191 ~~~~~~~~~~p~g~~~d~~G~lwva~~~  218 (297)
T 3g4e_A          191 VYKLEKEEQIPDGMCIDAEGKLWVACYN  218 (297)
T ss_dssp             EEECCGGGCEEEEEEEBTTSCEEEEEET
T ss_pred             EEECCCCCCCCCeeEECCCCCEEEEEcC
Confidence            1        1345678888887777653

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.81  E-value=3.5e-07  Score=78.33  Aligned_cols=222  Identities=9%  Similarity=0.096  Sum_probs=138.1

Q ss_pred             CceeEEEE-c-cCCCEEEEec------------------CCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCe
Q 021291           19 ASVTDVCF-H-QTKPILFAGT------------------TGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNK   78 (314)
Q Consensus        19 ~~v~~~~~-~-~~~~~l~s~~------------------~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   78 (314)
                      .....+++ + |+++++++++                  .++.+.+.|.++.+....+.....   -..++++|  ++++
T Consensus       134 ~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~---pd~~~~sp--dGk~  208 (595)
T 1fwx_A          134 KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGN---LDNCDADY--EGKW  208 (595)
T ss_dssp             CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSC---CCCEEECS--SSSE
T ss_pred             CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCC---ccceEECC--CCCE
Confidence            45778887 4 8999988884                  356899999999988888775432   35678999  9999


Q ss_pred             EEEeecCC---------------eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccC--C
Q 021291           79 VISQGRDG---------------TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREV--G  141 (314)
Q Consensus        79 l~s~~~dg---------------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  141 (314)
                      +++.+.+.               .|.+.|....+.      .......               ... +...+++...  .
T Consensus       209 ~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~------~v~~Gk~---------------~~i-~~V~VID~~~~~~  266 (595)
T 1fwx_A          209 AFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK------AIAAGDY---------------QEL-NGVKVVDGRKEAS  266 (595)
T ss_dssp             EEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH------HHHHTCS---------------EEE-TTEEEEECSGGGC
T ss_pred             EEEEecCcccCcchhhccccccceEEEeeccceeE------eccCCCe---------------eEE-CcEEEEeCcccCC
Confidence            99888653               244444322110      0000000               000 2244445544  2


Q ss_pred             ce-eeecCCCCC--CceeccCCCceEEEeecCcCeEEEEecCCCc------------eeeeecccccCCCCCcCCCCCce
Q 021291          142 ET-VDTDSLCDS--KDDVPAEGPKYMAVAGEQLSEVEIWDLNTAE------------RCTRLHQNSCGGSPNFSSKGRGM  206 (314)
Q Consensus       142 ~~-~~~~~~~~~--~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~------------~~~~~~~~~~~~~~~h~~~~~~~  206 (314)
                      .. ......+..  .+.++|||+++++ ++..+.+|.++|+.+.+            ......             ....
T Consensus       267 ~~~~~~Ipvg~~PhGv~~sPDGk~v~V-~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-------------vG~g  332 (595)
T 1fwx_A          267 SLFTRYIPIANNPHGCNMAPDKKHLCV-AGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-------------LGLG  332 (595)
T ss_dssp             CSSEEEEEEESSCCCEEECTTSSEEEE-ECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-------------CCSC
T ss_pred             ceeEEEEecCCCceEEEEcCCCCEEEE-eCCCCCeEEEEECcccccccccccCcccceEEEcC-------------CCCC
Confidence            22 111111212  2899999998776 56668999999998653            122222             2234


Q ss_pred             eeeEEEecCCCCCCceEEEEeecCCcEEEEEccC---------CCCceEeeecCCcceE-----EEEEeCCCCeEEEecC
Q 021291          207 CMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN---------PGIPLTAMKVHLEPVL-----CLSIDESCNGGISGGA  272 (314)
Q Consensus       207 ~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~---------~~~~~~~~~~h~~~v~-----~~~~~~~~~~l~s~s~  272 (314)
                      ...++ |+|+   | ...++...|++|.+||+..         ..+.+..+..|-.+-.     .+.+++||++|++...
T Consensus       333 P~h~a-F~~d---G-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk  407 (595)
T 1fwx_A          333 PLHTA-FDGR---G-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK  407 (595)
T ss_dssp             EEEEE-ECTT---S-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred             cceEE-ECCC---C-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence            56666 9998   6 3778888999999999875         1345667776654421     1234899999988753


Q ss_pred             ---CCcE----------EEEecCCCee
Q 021291          273 ---DQKI----------VLYNLDHSTY  286 (314)
Q Consensus       273 ---dg~i----------~iw~~~~~~~  286 (314)
                         |..+          .++|+..++.
T Consensus       408 ~skdr~~~~gp~~~~~~ql~dis~~~m  434 (595)
T 1fwx_A          408 FSKDRFLNVGPLKPENDQLIDISGDKM  434 (595)
T ss_dssp             CCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred             CCccccccCCCCCCCcceEEEcCCCcE
Confidence               4431          8899965553

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.79  E-value=8.9e-07  Score=78.84  Aligned_cols=213  Identities=11%  Similarity=0.061  Sum_probs=121.9

Q ss_pred             eEEEEccCCCEEEEecCCC-------------------eEEEEeCCCCeEEEEEeccCCc-------ccEEEEEEcccCC
Q 021291           22 TDVCFHQTKPILFAGTTGG-------------------ELRIWDTVQHRTVSSSWVHSAA-------HGIVSVATGPSIG   75 (314)
Q Consensus        22 ~~~~~~~~~~~l~s~~~dg-------------------~v~iwd~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~   75 (314)
                      ..++++|++.+++.++.++                   .|..+|.++|+.+..++...+.       ....-+....  +
T Consensus       246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~--d  323 (677)
T 1kb0_A          246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKI--A  323 (677)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEE--T
T ss_pred             cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEeccc--C
Confidence            4678999888888887664                   5999999999999888753221       1122334444  6


Q ss_pred             C---CeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceee-EEEeeeeeccccccccCCCCcceeeccCCceeee-cCCC
Q 021291           76 L---NKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYH-FCKLSLVKEPYANAKQANEPKDCYEREVGETVDT-DSLC  150 (314)
Q Consensus        76 ~---~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  150 (314)
                      |   ..++.++.+|.|.++|.++++.+.    ........ ...+.....+..     ....   .......... ...+
T Consensus       324 G~~~~~l~~~~~~G~l~~lD~~tG~~l~----~~~~~~~~~~~~~d~~g~~~~-----~~~~---~~~~~~~~~~P~~~G  391 (677)
T 1kb0_A          324 GKPRKVILHAPKNGFFFVLDRTNGKFIS----AKNFVPVNWASGYDKHGKPIG-----IAAA---RDGSKPQDAVPGPYG  391 (677)
T ss_dssp             TEEEEEEEECCTTSEEEEEETTTCCEEE----EEESSCCSSEEEECTTSCEEE-----CGGG---GCTTSCEECSSCTTC
T ss_pred             CcEeeEEEEECCCCEEEEEECCCCCEec----cccccccCcccccCCCCceee-----cccc---CcCCCccEECcCccc
Confidence            6   678999999999999999997643    22221110 000000000000     0000   0000000000 0011


Q ss_pred             CCC---ceeccCCCceEEEeec-----------------------------------------CcCeEEEEecCCCceee
Q 021291          151 DSK---DDVPAEGPKYMAVAGE-----------------------------------------QLSEVEIWDLNTAERCT  186 (314)
Q Consensus       151 ~~~---~~~~~~~~~~~~~~g~-----------------------------------------~d~~i~vwd~~~~~~~~  186 (314)
                      ...   ++++|+...+++.+..                                         ..+.|..||+.+++.+-
T Consensus       392 ~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W  471 (677)
T 1kb0_A          392 AHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAW  471 (677)
T ss_dssp             SSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEe
Confidence            111   6677776655442210                                         12789999999999887


Q ss_pred             eecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCC-cceEEEEEeCCCC
Q 021291          187 RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL-EPVLCLSIDESCN  265 (314)
Q Consensus       187 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~-~~v~~~~~~~~~~  265 (314)
                      +++.       +  .+..+    .. +.++   +. +++.++.||.+++||.++ ++.+..+.... ....-+.|..+|+
T Consensus       472 ~~~~-------~--~~~~~----g~-~~~~---g~-~v~~g~~dg~l~a~D~~t-G~~lw~~~~~~~~~~~p~~y~~~G~  532 (677)
T 1kb0_A          472 SVEH-------V--SPWNG----GT-LTTA---GN-VVFQGTADGRLVAYHAAT-GEKLWEAPTGTGVVAAPSTYMVDGR  532 (677)
T ss_dssp             EEEE-------S--SSCCC----CE-EEET---TT-EEEEECTTSEEEEEETTT-CCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             ecCC-------C--CCCcC----cc-eEeC---CC-EEEEECCCCcEEEEECCC-CceeeeeeCCCCcccCCEEEEeCCE
Confidence            7762       1  11111    11 4443   44 678889999999999999 88888887433 2334456667776


Q ss_pred             eE
Q 021291          266 GG  267 (314)
Q Consensus       266 ~l  267 (314)
                      .+
T Consensus       533 ~~  534 (677)
T 1kb0_A          533 QY  534 (677)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.79  E-value=4.4e-06  Score=63.51  Aligned_cols=169  Identities=15%  Similarity=0.081  Sum_probs=109.1

Q ss_pred             eEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC--eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeecccccccc
Q 021291           51 RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG--TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQ  128 (314)
Q Consensus        51 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (314)
                      +.+.++ .|........+.|++  + .++.+.+.+|  .|+.+|+.+++...  ...+......                
T Consensus        10 ~v~~~~-phd~~~ftqGL~~~~--~-~LyestG~~g~S~v~~vD~~tgkv~~--~~~l~~~~fg----------------   67 (243)
T 3mbr_X           10 RVVKRY-PHDTTAFTEGLFYLR--G-HLYESTGETGRSSVRKVDLETGRILQ--RAEVPPPYFG----------------   67 (243)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEET--T-EEEEEECCTTSCEEEEEETTTCCEEE--EEECCTTCCE----------------
T ss_pred             EEEEEc-CCCCccccccEEEEC--C-EEEEECCCCCCceEEEEECCCCCEEE--EEeCCCCcce----------------
Confidence            345555 466556788999986  3 6666767654  89999999997644  2222111111                


Q ss_pred             CCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceee
Q 021291          129 ANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCM  208 (314)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  208 (314)
                                               ..+.+.++.++.++ -.++.+.+||..+.+.+.+++.             ...-+
T Consensus        68 -------------------------eGi~~~~~~ly~lt-w~~~~v~v~D~~tl~~~~ti~~-------------~~~Gw  108 (243)
T 3mbr_X           68 -------------------------AGIVAWRDRLIQLT-WRNHEGFVYDLATLTPRARFRY-------------PGEGW  108 (243)
T ss_dssp             -------------------------EEEEEETTEEEEEE-SSSSEEEEEETTTTEEEEEEEC-------------SSCCC
T ss_pred             -------------------------eEEEEeCCEEEEEE-eeCCEEEEEECCcCcEEEEEeC-------------CCCce
Confidence                                     11223456666654 4579999999999999999883             11223


Q ss_pred             eEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecC--C---cceEEEEEeCCCCeEEEecCCCcEEEEecCC
Q 021291          209 AVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH--L---EPVLCLSIDESCNGGISGGADQKIVLYNLDH  283 (314)
Q Consensus       209 ~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h--~---~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~  283 (314)
                      .   +.++   +. .|+.+..++.|.++|..+ .+.+..+...  .   ..++.+.+. +|+..+..-.+..|.+.|.++
T Consensus       109 g---lt~d---g~-~L~vSdgs~~l~~iDp~t-~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~t  179 (243)
T 3mbr_X          109 A---LTSD---DS-HLYMSDGTAVIRKLDPDT-LQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPAS  179 (243)
T ss_dssp             E---EEEC---SS-CEEEECSSSEEEEECTTT-CCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTT
T ss_pred             E---EeeC---CC-EEEEECCCCeEEEEeCCC-CeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCC
Confidence            3   3334   33 344444588999999998 6777666532  2   245667776 566556665678999999999


Q ss_pred             CeeeEe
Q 021291          284 STYVLF  289 (314)
Q Consensus       284 ~~~~~~  289 (314)
                      ++.+..
T Consensus       180 G~V~~~  185 (243)
T 3mbr_X          180 GKVVAW  185 (243)
T ss_dssp             CBEEEE
T ss_pred             CCEEEE
Confidence            887654

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.76  E-value=3.2e-05  Score=60.46  Aligned_cols=207  Identities=6%  Similarity=-0.074  Sum_probs=123.0

Q ss_pred             CceeEEEEccCCC-EEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEE-eecCCeEEEEeCCCC
Q 021291           19 ASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS-QGRDGTVKCWDIENG   96 (314)
Q Consensus        19 ~~v~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s-~~~dg~v~iwd~~~~   96 (314)
                      ..+..++|++++. ++++-..++.|.+++.........+....  .....+++.+  ++..|+. -...+.|.++++...
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~--~~p~~ia~d~--~~~~lyv~d~~~~~I~~~~~~g~  111 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDL--GSPEGIALDH--LGRTIFWTDSQLDRIEVAKMDGT  111 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTC--CCEEEEEEET--TTTEEEEEETTTTEEEEEETTSC
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCC--CCccEEEEEe--cCCeEEEEECCCCEEEEEEcCCC
Confidence            3567899999654 45555667899999987654433332221  3478999998  6555554 445678999998653


Q ss_pred             CCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecC-cCeEE
Q 021291           97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ-LSEVE  175 (314)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-d~~i~  175 (314)
                      .. .  .+ ......     .+.                                 .++++|++..++++.... .+.|.
T Consensus       112 ~~-~--~~-~~~~~~-----~P~---------------------------------~i~vd~~~g~lyv~~~~~~~~~I~  149 (267)
T 1npe_A          112 QR-R--VL-FDTGLV-----NPR---------------------------------GIVTDPVRGNLYWTDWNRDNPKIE  149 (267)
T ss_dssp             SC-E--EE-ECSSCS-----SEE---------------------------------EEEEETTTTEEEEEECCSSSCEEE
T ss_pred             CE-E--EE-EECCCC-----Ccc---------------------------------EEEEeeCCCEEEEEECCCCCcEEE
Confidence            21 0  00 000000     000                                 056888766666543221 36888


Q ss_pred             EEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcce
Q 021291          176 IWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPV  255 (314)
Q Consensus       176 vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v  255 (314)
                      .+++... ....+..       .    .......++ ++|+   +..++++-...+.|.++|... ......+.. ....
T Consensus       150 ~~~~dg~-~~~~~~~-------~----~~~~P~gia-~d~~---~~~lyv~d~~~~~I~~~~~~g-~~~~~~~~~-~~~P  211 (267)
T 1npe_A          150 TSHMDGT-NRRILAQ-------D----NLGLPNGLT-FDAF---SSQLCWVDAGTHRAECLNPAQ-PGRRKVLEG-LQYP  211 (267)
T ss_dssp             EEETTSC-CCEEEEC-------T----TCSCEEEEE-EETT---TTEEEEEETTTTEEEEEETTE-EEEEEEEEC-CCSE
T ss_pred             EEecCCC-CcEEEEE-------C----CCCCCcEEE-EcCC---CCEEEEEECCCCEEEEEecCC-CceEEEecC-CCCc
Confidence            8887533 2222221       0    112456676 9886   332566666778999999874 333233332 2344


Q ss_pred             EEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEee
Q 021291          256 LCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFG  290 (314)
Q Consensus       256 ~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~  290 (314)
                      ..++.+ ++..+++....+.|.++|..+++.+..+
T Consensus       212 ~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i  245 (267)
T 1npe_A          212 FAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTF  245 (267)
T ss_dssp             EEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             eEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEE
Confidence            677776 4445566656789999999998876654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.72  E-value=3.4e-05  Score=59.44  Aligned_cols=220  Identities=9%  Similarity=0.022  Sum_probs=127.8

Q ss_pred             EecCCCCceeEEEEccCCCEE-EEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEE
Q 021291           13 VLRGHRASVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW   91 (314)
Q Consensus        13 ~l~~h~~~v~~~~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iw   91 (314)
                      .+.|-.+.+..++|+|++..| ++...++.|...|.. ++.++.+..... .....|++.+  ++.++++.-.++.+.++
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~-~D~EGIa~~~--~g~~~vs~E~~~~l~~~   96 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFV-KDLETIEYIG--DNQFVISDERDYAIYVI   96 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSC-SSEEEEEECS--TTEEEEEETTTTEEEEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCC-CChHHeEEeC--CCEEEEEECCCCcEEEE
Confidence            455666789999999976544 557778899999987 888887753221 2377888888  87766666667889999


Q ss_pred             eCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCc
Q 021291           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL  171 (314)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d  171 (314)
                      ++.....+.    ......     +.....+                        .-.+-.+++|+|.++.++++....-
T Consensus        97 ~v~~~~~i~----~~~~~~-----~~~~~~~------------------------~N~g~EGLA~d~~~~~L~va~E~~p  143 (255)
T 3qqz_A           97 SLTPNSEVK----ILKKIK-----IPLQESP------------------------TNCGFEGLAYSRQDHTFWFFKEKNP  143 (255)
T ss_dssp             EECTTCCEE----EEEEEE-----CCCSSCC------------------------CSSCCEEEEEETTTTEEEEEEESSS
T ss_pred             EcCCCCeee----eeeeec-----ccccccc------------------------ccCCcceEEEeCCCCEEEEEECcCC
Confidence            887653211    000000     0000000                        0000011889999988887554422


Q ss_pred             CeEEEEecC-CCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeec
Q 021291          172 SEVEIWDLN-TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV  250 (314)
Q Consensus       172 ~~i~vwd~~-~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~  250 (314)
                      ..|+.|+-. ....+..+.....    .... ...-..+++ |+|.  .++ +++....++.|.++|..  ++++..+.-
T Consensus       144 ~~i~~~~g~~~~~~l~i~~~~~~----~~~~-~~~d~S~l~-~dp~--tg~-lliLS~~s~~L~~~d~~--g~~~~~~~L  212 (255)
T 3qqz_A          144 IEVYKVNGLLSSNELHISKDKAL----QRQF-TLDDVSGAE-FNQQ--KNT-LLVLSHESRALQEVTLV--GEVIGEMSL  212 (255)
T ss_dssp             EEEEEEESTTCSSCCEEEECHHH----HHTC-CSSCCCEEE-EETT--TTE-EEEEETTTTEEEEECTT--CCEEEEEEC
T ss_pred             ceEEEEcccccCCceeeecchhh----cccc-ccCCceeEE-EcCC--CCe-EEEEECCCCeEEEEcCC--CCEEEEEEc
Confidence            255555510 1111111110000    0000 011345666 9997  255 77777788899999977  556655542


Q ss_pred             CC---------cceEEEEEeCCCCeEEEecCCCcEEEEec
Q 021291          251 HL---------EPVLCLSIDESCNGGISGGADQKIVLYNL  281 (314)
Q Consensus       251 h~---------~~v~~~~~~~~~~~l~s~s~dg~i~iw~~  281 (314)
                      ..         ..-..|+|+++|++.++ |..+.++.+.-
T Consensus       213 ~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~  251 (255)
T 3qqz_A          213 TKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP  251 (255)
T ss_dssp             STTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred             CCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence            21         25689999999985555 66666666543

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.72  E-value=2e-06  Score=76.82  Aligned_cols=214  Identities=11%  Similarity=0.069  Sum_probs=119.5

Q ss_pred             EEEEccCCCEEEEecCCCe-------------------EEEEeCCCCeEEEEEeccCCc-------ccEEEEEEcccCCC
Q 021291           23 DVCFHQTKPILFAGTTGGE-------------------LRIWDTVQHRTVSSSWVHSAA-------HGIVSVATGPSIGL   76 (314)
Q Consensus        23 ~~~~~~~~~~l~s~~~dg~-------------------v~iwd~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~   76 (314)
                      .++++|++.+++.++.++.                   |..+|.++|+.+..++...+.       .++.......  ++
T Consensus       239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~--~G  316 (689)
T 1yiq_A          239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPI--DG  316 (689)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE--TT
T ss_pred             ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeecc--CC
Confidence            6889998889999888764                   999999999999888753211       1122222223  44


Q ss_pred             C---eEEEeecCCeEEEEeCCCCCCCCCCeeeeecceee-EEEeeee-eccccccccCCCCcceeeccCCc-eeee-cCC
Q 021291           77 N---KVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYH-FCKLSLV-KEPYANAKQANEPKDCYEREVGE-TVDT-DSL  149 (314)
Q Consensus        77 ~---~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~  149 (314)
                      +   .++.++.+|.++++|.++++.+.    ........ ...+... ..+.....      ..+.....+ .... ...
T Consensus       317 ~~~~~v~~~~~~G~l~~lD~~tG~~l~----~~~~~~~~w~~~~~~~~~~pi~~~~------~~~~~~~~~~~~~~p~~~  386 (689)
T 1yiq_A          317 KPRKVLMQAPKNGFFYVIDRATGELLS----AKGIVPQSWTKGMDMKTGRPILDEE------NAAYWKNGKRNLVTPAFW  386 (689)
T ss_dssp             EEEEEEEECCTTSEEEEEETTTCCEEE----EEESSCCSSEEEEETTTTEEEECHH------HHCTTTSSSCEEESSCTT
T ss_pred             cEEEEEEEECCCCeEEEEECCCCCEec----cccccccccccccCccCCCcccchh------hccccCCCCeeEeCCCcc
Confidence            4   78899999999999999998643    11111100 0000000 00000000      000000000 0000 000


Q ss_pred             CCCC---ceeccCCCceEEEee-------------------------------------------cCcCeEEEEecCCCc
Q 021291          150 CDSK---DDVPAEGPKYMAVAG-------------------------------------------EQLSEVEIWDLNTAE  183 (314)
Q Consensus       150 ~~~~---~~~~~~~~~~~~~~g-------------------------------------------~~d~~i~vwd~~~~~  183 (314)
                      +...   ++++|+...+++.+.                                           ..+|.|..||+.+++
T Consensus       387 Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~  466 (689)
T 1yiq_A          387 GAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQ  466 (689)
T ss_dssp             CSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTE
T ss_pred             cccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCC
Confidence            1101   556665543333211                                           014889999999999


Q ss_pred             eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCc-ceEEEEEeC
Q 021291          184 RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE-PVLCLSIDE  262 (314)
Q Consensus       184 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~-~v~~~~~~~  262 (314)
                      .+-+++.        +.. ..+.    . +...   +. +++.|+.||.|+.||.++ ++.+.+++.... ...-+.|..
T Consensus       467 ~~W~~~~--------~~~-~~~g----~-~~ta---gg-lvf~gt~dg~l~a~D~~t-G~~lw~~~~~~~~~~~p~ty~~  527 (689)
T 1yiq_A          467 AAWEVPY--------VTI-FNGG----T-LSTA---GN-LVFEGSADGRVIAYAADT-GEKLWEQPAASGVMAAPVTYSV  527 (689)
T ss_dssp             EEEEEEE--------SSS-CCCC----E-EEET---TT-EEEEECTTSEEEEEETTT-CCEEEEEECSSCCCSCCEEEEE
T ss_pred             eEeEccC--------CCC-ccCc----c-ceEC---CC-EEEEECCCCcEEEEECCC-CccceeeeCCCCcccCceEEEE
Confidence            8877762        211 1111    1 4433   34 788899999999999999 888888774432 224466777


Q ss_pred             CCCeE
Q 021291          263 SCNGG  267 (314)
Q Consensus       263 ~~~~l  267 (314)
                      +|+..
T Consensus       528 ~G~qy  532 (689)
T 1yiq_A          528 DGEQY  532 (689)
T ss_dssp             TTEEE
T ss_pred             CCEEE
Confidence            77643

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.69  E-value=3.5e-05  Score=62.09  Aligned_cols=214  Identities=11%  Similarity=0.024  Sum_probs=120.0

Q ss_pred             EecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccC------------------CcccEEEEEEcccC
Q 021291           13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS------------------AAHGIVSVATGPSI   74 (314)
Q Consensus        13 ~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~------------------~~~~v~~~~~~~~~   74 (314)
                      .+.+.-....+++|++++++++++..++.|..|+..+++.. .+....                  ....+..+++.+  
T Consensus        13 ~~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~--   89 (322)
T 2fp8_A           13 LIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL--   89 (322)
T ss_dssp             EEECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET--
T ss_pred             ecCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcC--
Confidence            34444455678999999987888889999999998765433 232110                  002378899986  


Q ss_pred             CCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCc
Q 021291           75 GLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKD  154 (314)
Q Consensus        75 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (314)
                      +...|+.+...+.|..+|..++....  ....... ...  ..+.                                 ++
T Consensus        90 ~~g~l~v~d~~~~i~~~d~~~g~~~~--~~~~~~~-~~~--~~p~---------------------------------~i  131 (322)
T 2fp8_A           90 QNNQLYIVDCYYHLSVVGSEGGHATQ--LATSVDG-VPF--KWLY---------------------------------AV  131 (322)
T ss_dssp             TTTEEEEEETTTEEEEECTTCEECEE--EESEETT-EEC--SCEE---------------------------------EE
T ss_pred             CCCcEEEEECCCCEEEEeCCCCEEEE--ecccCCC-Ccc--cccc---------------------------------eE
Confidence            44566666555668888877553210  0000000 000  0000                                 04


Q ss_pred             eecc-CCCceEEEeec----------------CcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCC
Q 021291          155 DVPA-EGPKYMAVAGE----------------QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSK  217 (314)
Q Consensus       155 ~~~~-~~~~~~~~~g~----------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~  217 (314)
                      ++.+ +|. ++++...                .++.|..||..+++......        .     ......++ ++|+ 
T Consensus       132 ~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~--------~-----~~~p~gia-~~~d-  195 (322)
T 2fp8_A          132 TVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK--------E-----LHVPGGAE-VSAD-  195 (322)
T ss_dssp             EECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEE--------E-----ESCCCEEE-ECTT-
T ss_pred             EEecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEecc--------C-----CccCcceE-ECCC-
Confidence            4667 664 3332211                23678899987665432222        0     11233455 9987 


Q ss_pred             CCCceEEEEeecCCcEEEEEccCCC-CceEeeecCCcceEEEEEeCCCCeEEEecC----------CCcEEEEecCCCee
Q 021291          218 SQGFVNVLAGYEDGSILVWDIRNPG-IPLTAMKVHLEPVLCLSIDESCNGGISGGA----------DQKIVLYNLDHSTY  286 (314)
Q Consensus       218 ~~g~~~l~~g~~dg~i~vwd~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~----------dg~i~iw~~~~~~~  286 (314)
                        |+.++++-..++.|.+|++.... .....+..... ...++++++|++.++...          .+.|..+|.+ ++.
T Consensus       196 --g~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~  271 (322)
T 2fp8_A          196 --SSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNI  271 (322)
T ss_dssp             --SSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCE
T ss_pred             --CCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCE
Confidence              55244555667899999987411 11122221223 788999999986666544          4567777764 443


Q ss_pred             e
Q 021291          287 V  287 (314)
Q Consensus       287 ~  287 (314)
                      +
T Consensus       272 ~  272 (322)
T 2fp8_A          272 L  272 (322)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.69  E-value=3.8e-06  Score=67.81  Aligned_cols=217  Identities=12%  Similarity=-0.017  Sum_probs=120.6

Q ss_pred             CCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecc
Q 021291           30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTN  109 (314)
Q Consensus        30 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~  109 (314)
                      +..|..++.++.|..+|.. ++..........  .+.++...+  ++ .++.++.++.|..+|.. ++...    .....
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~--~~~~~~~~~--~g-~l~vgt~~~~l~~~d~~-g~~~~----~~~~~  175 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKA--IYATPIVSE--DG-TIYVGSNDNYLYAINPD-GTEKW----RFKTN  175 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSSC--CCSCCEECT--TS-CEEEECTTSEEEEECTT-SCEEE----EEECS
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCc--eeeeeEEcC--CC-EEEEEcCCCEEEEECCC-CCEeE----EEecC
Confidence            4467778889999999988 777766655442  356666666  54 46677888999999998 65322    22111


Q ss_pred             eeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC---ceeccCCCceEEEeecCcCeEEEEecCCCceee
Q 021291          110 SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCT  186 (314)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~  186 (314)
                      ...................  .....++ ..+............   +...++|. +++  ++.++.|..+|. +++.+.
T Consensus       176 ~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v--~t~~~gl~~~~~-~g~~~~  248 (330)
T 3hxj_A          176 DAITSAASIGKDGTIYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYV--TSLDGHLYAINP-DGTEKW  248 (330)
T ss_dssp             SCCCSCCEECTTCCEEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEE--EETTTEEEEECT-TSCEEE
T ss_pred             CCceeeeEEcCCCEEEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEE--EcCCCeEEEECC-CCCEeE
Confidence            1110001111111111111  2223333 222222211111111   55666664 443  344678888884 555555


Q ss_pred             eecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCe
Q 021291          187 RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNG  266 (314)
Q Consensus       187 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  266 (314)
                      .+..        .    ......+. +.++   +  .|..++.+|.|..+|. + ++.+..+......+.++..+.++. 
T Consensus       249 ~~~~--------~----~~~~~~~~-~~~~---g--~l~v~t~~ggl~~~d~-~-g~~~~~~~~~~~~~~~~~~d~~g~-  307 (330)
T 3hxj_A          249 RFKT--------G----KRIESSPV-IGNT---D--TIYFGSYDGHLYAINP-D-GTEKWNFETGSWIIATPVIDENGT-  307 (330)
T ss_dssp             EEEC--------S----SCCCSCCE-ECTT---S--CEEEECTTCEEEEECT-T-SCEEEEEECSSCCCSCCEECTTCC-
T ss_pred             EeeC--------C----CCccccce-EcCC---C--eEEEecCCCCEEEECC-C-CcEEEEEEcCCccccceEEcCCCE-
Confidence            5542        1    11122232 4433   4  4777888889999996 4 666666665556677888888886 


Q ss_pred             EEEecCCCcEEEEecCCCe
Q 021291          267 GISGGADQKIVLYNLDHST  285 (314)
Q Consensus       267 l~s~s~dg~i~iw~~~~~~  285 (314)
                      |..++.+|.+++...+..+
T Consensus       308 l~~gt~~G~~~~~~~~~~~  326 (330)
T 3hxj_A          308 IYFGTRNGKFYALFNLEHH  326 (330)
T ss_dssp             EEEECTTSCEEEEEC----
T ss_pred             EEEEcCCCeEEEEeccccc
Confidence            5668899999998766543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.66  E-value=7.8e-05  Score=59.60  Aligned_cols=233  Identities=7%  Similarity=-0.022  Sum_probs=123.7

Q ss_pred             CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC-C-
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD-G-   86 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g-   86 (314)
                      +.+..+... .....++|+++++++++-..++.|..||.+. +....+.. .  .....+++.+  +++++++.... + 
T Consensus        23 ~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~-~--~~p~gia~~~--dG~l~vad~~~~~~   95 (306)
T 2p4o_A           23 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATV-E--GKVSGLAFTS--NGDLVATGWNADSI   95 (306)
T ss_dssp             EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEEC-S--SEEEEEEECT--TSCEEEEEECTTSC
T ss_pred             eEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeC-C--CCceeEEEcC--CCcEEEEeccCCcc
Confidence            344455432 5678899999999888877889999999765 44333332 2  3488999999  88865554332 2 


Q ss_pred             eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCc---eee---e-----cCCCC-CC-
Q 021291           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE---TVD---T-----DSLCD-SK-  153 (314)
Q Consensus        87 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~-----~~~~~-~~-  153 (314)
                      .|..+|..+++...  .......... .......... ..........++.+....   .+.   .     ..... .. 
T Consensus        96 ~v~~~d~~~g~~~~--~~~~~~~~~~-~g~~~~~~~~-~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~p  171 (306)
T 2p4o_A           96 PVVSLVKSDGTVET--LLTLPDAIFL-NGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAA  171 (306)
T ss_dssp             EEEEEECTTSCEEE--EEECTTCSCE-EEEEESSSSE-EEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSE
T ss_pred             eEEEEcCCCCeEEE--EEeCCCcccc-CcccccCCCc-EEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcC
Confidence            47777777765321  1111111100 0000000000 011111223444443221   111   0     00011 11 


Q ss_pred             ceeccCCCceEEEeecCcCeEEEEecCC-Cce--eeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecC
Q 021291          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNT-AER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED  230 (314)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~i~vwd~~~-~~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~d  230 (314)
                      ..++++++.+++ +-...+.|..||+.. ++.  ...+..             ......++ ++++   |+ ++++....
T Consensus       172 ngis~dg~~lyv-~d~~~~~I~~~~~~~~g~~~~~~~~~~-------------~~~P~gi~-vd~d---G~-l~va~~~~  232 (306)
T 2p4o_A          172 NGLKRFGNFLYV-SNTEKMLLLRIPVDSTDKPGEPEIFVE-------------QTNIDDFA-FDVE---GN-LYGATHIY  232 (306)
T ss_dssp             EEEEEETTEEEE-EETTTTEEEEEEBCTTSCBCCCEEEEE-------------SCCCSSEE-EBTT---CC-EEEECBTT
T ss_pred             CCcCcCCCEEEE-EeCCCCEEEEEEeCCCCCCCccEEEec-------------cCCCCCeE-ECCC---CC-EEEEeCCC
Confidence            223788877765 455578999999874 321  111110             01233344 7776   65 66666667


Q ss_pred             CcEEEEEccCCCCce--EeeecCCcceEEEEEe---CCCCeEEEecCC
Q 021291          231 GSILVWDIRNPGIPL--TAMKVHLEPVLCLSID---ESCNGGISGGAD  273 (314)
Q Consensus       231 g~i~vwd~~~~~~~~--~~~~~h~~~v~~~~~~---~~~~~l~s~s~d  273 (314)
                      +.|.++|..  ++..  ..+.......++++|.   +++..|+..+..
T Consensus       233 ~~V~~~~~~--G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          233 NSVVRIAPD--RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             CCEEEECTT--CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CeEEEECCC--CCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence            889999975  4442  2333333568999998   786666544433

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.64  E-value=9.5e-06  Score=64.90  Aligned_cols=178  Identities=13%  Similarity=0.036  Sum_probs=103.6

Q ss_pred             ccEEEEEEcccCCCC-eEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCC
Q 021291           63 HGIVSVATGPSIGLN-KVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVG  141 (314)
Q Consensus        63 ~~v~~~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (314)
                      .......|+|  +++ ++++...++.|..|+. +++. .  .+...... ...                           
T Consensus        45 ~~~egp~~~~--~g~~l~~~d~~~~~i~~~~~-~g~~-~--~~~~~~~~-~~g---------------------------   90 (305)
T 3dr2_A           45 TWSEGPAWWE--AQRTLVWSDLVGRRVLGWRE-DGTV-D--VLLDATAF-TNG---------------------------   90 (305)
T ss_dssp             SSEEEEEEEG--GGTEEEEEETTTTEEEEEET-TSCE-E--EEEESCSC-EEE---------------------------
T ss_pred             cCccCCeEeC--CCCEEEEEECCCCEEEEEeC-CCCE-E--EEeCCCCc-cce---------------------------
Confidence            3478899999  887 5667777899999988 3431 1  11111110 000                           


Q ss_pred             ceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCc
Q 021291          142 ETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGF  221 (314)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~  221 (314)
                                  ++++++|+ +++ +...++.|.+||.. ++. ..+..       .........+..+. ++|+   |+
T Consensus        91 ------------l~~d~dG~-l~v-~~~~~~~v~~~~~~-g~~-~~~~~-------~~~~~~~~~~~~i~-~d~d---G~  143 (305)
T 3dr2_A           91 ------------NAVDAQQR-LVH-CEHGRRAITRSDAD-GQA-HLLVG-------RYAGKRLNSPNDLI-VARD---GA  143 (305)
T ss_dssp             ------------EEECTTSC-EEE-EETTTTEEEEECTT-SCE-EEEEC-------EETTEECSCCCCEE-ECTT---SC
T ss_pred             ------------eeECCCCC-EEE-EECCCCEEEEECCC-CCE-EEEEe-------ccCCCccCCCCCEE-ECCC---CC
Confidence                        55788886 443 34435789999986 543 22221       00000112344565 8887   65


Q ss_pred             eEEEE----eec-------------CCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCC------CcEEE
Q 021291          222 VNVLA----GYE-------------DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD------QKIVL  278 (314)
Q Consensus       222 ~~l~~----g~~-------------dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d------g~i~i  278 (314)
                       +.++    |..             .+.|+.||..+ ++.....  .....+.++|+|+++.|+.+...      +.|.+
T Consensus       144 -l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~-g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~  219 (305)
T 3dr2_A          144 -IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG-SPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITA  219 (305)
T ss_dssp             -EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS-CCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEE
T ss_pred             -EEEeCcCCCccccccccccccccCCCeEEEEcCCC-CcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEE
Confidence             5554    332             25677788765 4433322  34567889999999977666554      78999


Q ss_pred             EecCCCee----eEe------eeeeeecCCCceecee
Q 021291          279 YNLDHSTY----VLF------GIGFVCDQEGNKFGTT  305 (314)
Q Consensus       279 w~~~~~~~----~~~------~~~~~~~~~~~~~~~~  305 (314)
                      |++..+..    ++.      ..++..+++|.++...
T Consensus       220 ~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~  256 (305)
T 3dr2_A          220 FAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS  256 (305)
T ss_dssp             EEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC
T ss_pred             EEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec
Confidence            99876541    110      1256677777655543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.60  E-value=9.1e-05  Score=59.79  Aligned_cols=192  Identities=6%  Similarity=-0.088  Sum_probs=102.7

Q ss_pred             EEEEEEcccCCCC-eEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCce
Q 021291           65 IVSVATGPSIGLN-KVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGET  143 (314)
Q Consensus        65 v~~~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (314)
                      ..+..|+|  +++ ++++...++.|..||..+++..   .+... .......+...+.  ..... ......++...+..
T Consensus        51 ~egp~~~~--~~~~l~~~d~~~~~i~~~d~~~~~~~---~~~~~-~~v~~i~~~~dg~--l~v~~-~~gl~~~d~~~g~~  121 (326)
T 2ghs_A           51 GEGPTFDP--ASGTAWWFNILERELHELHLASGRKT---VHALP-FMGSALAKISDSK--QLIAS-DDGLFLRDTATGVL  121 (326)
T ss_dssp             EEEEEEET--TTTEEEEEEGGGTEEEEEETTTTEEE---EEECS-SCEEEEEEEETTE--EEEEE-TTEEEEEETTTCCE
T ss_pred             CcCCeEeC--CCCEEEEEECCCCEEEEEECCCCcEE---EEECC-CcceEEEEeCCCe--EEEEE-CCCEEEEECCCCcE
Confidence            56788998  644 5556667889999999876431   11111 1122222222211  11111 12233344433332


Q ss_pred             eee-cCC-CCCC-----ceeccCCCceEEEeec-----CcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEE
Q 021291          144 VDT-DSL-CDSK-----DDVPAEGPKYMAVAGE-----QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQ  211 (314)
Q Consensus       144 ~~~-~~~-~~~~-----~~~~~~~~~~~~~~g~-----~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  211 (314)
                      ... ... ....     ++++|+|+. ++.+..     ..+.|..+|  +++.. .+..        .    ......+.
T Consensus       122 ~~~~~~~~~~~~~~~~~i~~d~~G~l-~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~--------~----~~~~~~i~  185 (326)
T 2ghs_A          122 TLHAELESDLPGNRSNDGRMHPSGAL-WIGTMGRKAETGAGSIYHVA--KGKVT-KLFA--------D----ISIPNSIC  185 (326)
T ss_dssp             EEEECSSTTCTTEEEEEEEECTTSCE-EEEEEETTCCTTCEEEEEEE--TTEEE-EEEE--------E----ESSEEEEE
T ss_pred             EEEeeCCCCCCCCCCCCEEECCCCCE-EEEeCCCcCCCCceEEEEEe--CCcEE-EeeC--------C----CcccCCeE
Confidence            211 111 1111     788999874 433321     124566666  44432 2221        1    11344566


Q ss_pred             EecCCCCCCceEEEEeecCCcEEEEEcc--CCC-Cc-----eEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCC
Q 021291          212 AYLPSKSQGFVNVLAGYEDGSILVWDIR--NPG-IP-----LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH  283 (314)
Q Consensus       212 ~~~p~~~~g~~~l~~g~~dg~i~vwd~~--~~~-~~-----~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~  283 (314)
                       |+|+   |+.++++...++.|.+||+.  + + ..     +..+......+..++++++|.+.++...++.|.+|+.+ 
T Consensus       186 -~s~d---g~~lyv~~~~~~~I~~~d~~~~~-Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-  259 (326)
T 2ghs_A          186 -FSPD---GTTGYFVDTKVNRLMRVPLDART-GLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-  259 (326)
T ss_dssp             -ECTT---SCEEEEEETTTCEEEEEEBCTTT-CCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-
T ss_pred             -EcCC---CCEEEEEECCCCEEEEEEccccc-CCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-
Confidence             9998   55344555667899999986  4 3 21     22222334567889999999877776667889999984 


Q ss_pred             Ceee
Q 021291          284 STYV  287 (314)
Q Consensus       284 ~~~~  287 (314)
                      ++.+
T Consensus       260 g~~~  263 (326)
T 2ghs_A          260 GNHI  263 (326)
T ss_dssp             CCEE
T ss_pred             CCEE
Confidence            4443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.58  E-value=1.2e-06  Score=70.82  Aligned_cols=237  Identities=9%  Similarity=-0.031  Sum_probs=124.3

Q ss_pred             CCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCe
Q 021291            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (314)
Q Consensus         8 ~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (314)
                      ++++..+..+.....+.....++ .|..++.++.|..|| .+++.+.......  ..+.++...+  ++ .++.++.+  
T Consensus         9 g~~~W~~~~~~~~~~~~~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~--~~~~~~~~~~--~g-~l~v~t~~--   79 (330)
T 3hxj_A            9 CKIKWEFLIGNSIDSSPILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGE--IIECRPSIGK--DG-TIYFGSDK--   79 (330)
T ss_dssp             ---CCTTTSCEEECCCCEECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGG--EEEECCEETT--TT-EECCSSCE--
T ss_pred             ceEEEEEeCCCCcccCceEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCC--CcccceEEec--CC-cEEEecCc--
Confidence            34444444444334455565566 566778888899999 8888766554433  3366777766  54 45555555  


Q ss_pred             EEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeee-cCCCCCC--ceeccCCCceE
Q 021291           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDT-DSLCDSK--DDVPAEGPKYM  164 (314)
Q Consensus        88 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~  164 (314)
                      |..+|. +++....  +...........  .. ..........+....++.. +..... .......  +...+++. ++
T Consensus        80 l~~~d~-~g~~~~~--~~~~~~~~~~~~--~~-~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~  151 (330)
T 3hxj_A           80 VYAINP-DGTEKWR--FDTKKAIVSDFT--IF-EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IY  151 (330)
T ss_dssp             EEEECC-CGGGGGG--SCC-----CCEE--EE-TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EE
T ss_pred             EEEECC-CCcEEEE--EECCCCcccCce--EE-CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EE
Confidence            888886 5543321  111111000011  11 1111111112222333333 222211 1111111  44555654 44


Q ss_pred             EEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCc
Q 021291          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (314)
Q Consensus       165 ~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~  244 (314)
                      +  ++.++.|..||.. ++....+..        .    ...+.++. ..++   |.  +..++  +.|..+| .+ ++.
T Consensus       152 v--gt~~~~l~~~d~~-g~~~~~~~~--------~----~~~~~~~~-~d~~---g~--l~v~t--~~l~~~d-~~-g~~  206 (330)
T 3hxj_A          152 V--GSNDNYLYAINPD-GTEKWRFKT--------N----DAITSAAS-IGKD---GT--IYFGS--DKVYAIN-PD-GTE  206 (330)
T ss_dssp             E--ECTTSEEEEECTT-SCEEEEEEC--------S----SCCCSCCE-ECTT---CC--EEEES--SSEEEEC-TT-SCE
T ss_pred             E--EcCCCEEEEECCC-CCEeEEEec--------C----CCceeeeE-EcCC---CE--EEEEe--CEEEEEC-CC-CcE
Confidence            3  5556899999998 776655552        1    11233333 5444   44  44454  7899999 55 666


Q ss_pred             eEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeE
Q 021291          245 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVL  288 (314)
Q Consensus       245 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~  288 (314)
                      +.........+.++..++++. |..++.++.|..++. +++.++
T Consensus       207 ~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~  248 (330)
T 3hxj_A          207 KWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKW  248 (330)
T ss_dssp             EEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEE
T ss_pred             EEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeE
Confidence            666665556788888888876 555666777888874 444444

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.50  E-value=1.1e-05  Score=72.87  Aligned_cols=198  Identities=11%  Similarity=0.007  Sum_probs=106.7

Q ss_pred             ceeEEEEc-cCCCEEEEec-----CCCeEEEEeCCCC-eEEEE-EeccCCcccEEEEEEcccCCCCeEEEeecC-----C
Q 021291           20 SVTDVCFH-QTKPILFAGT-----TGGELRIWDTVQH-RTVSS-SWVHSAAHGIVSVATGPSIGLNKVISQGRD-----G   86 (314)
Q Consensus        20 ~v~~~~~~-~~~~~l~s~~-----~dg~v~iwd~~~~-~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----g   86 (314)
                      .+...+|| |||++||-+.     ...+|+++|+.++ +.+.. +.     .....++|+|  |++.|+....|     .
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~-----~~~~~~~Wsp--Dg~~l~y~~~d~~~~~~  247 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS-----GTNGEIVWGP--DHTSLFYVTKDETLREN  247 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE-----EECSCCEECS--STTEEEEEEECTTCCEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc-----CceeeEEEec--CCCEEEEEEECCCCCCC
Confidence            67789999 9999887432     2235999999988 63211 11     1134688999  98888776665     2


Q ss_pred             eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEE
Q 021291           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV  166 (314)
Q Consensus        87 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (314)
                      .|.++++.++......++.........   .                                    ..|+|||+.+++.
T Consensus       248 ~v~~~~lgt~~~~~~lv~~~~~~~~~~---~------------------------------------~~~SpDg~~l~~~  288 (751)
T 2xe4_A          248 KVWRHVMGKLQSEDVCLYEEHNPLFSA---F------------------------------------MYKAADTNTLCIG  288 (751)
T ss_dssp             EEEEEETTSCGGGCEEEEECCCTTCEE---E------------------------------------EEECTTSSEEEEE
T ss_pred             EEEEEECCCCchhcEEEEecCCCceEE---E------------------------------------EEECCCCCEEEEE
Confidence            577777766532110011100000000   0                                    4599999988775


Q ss_pred             eec-CcCeEEEEecCCCc-ee--eeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecC----CcEEEEEc
Q 021291          167 AGE-QLSEVEIWDLNTAE-RC--TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED----GSILVWDI  238 (314)
Q Consensus       167 ~g~-~d~~i~vwd~~~~~-~~--~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~d----g~i~vwd~  238 (314)
                      +.. ....|.++|+.++. ..  ..+..       ..    ....+++. |+.    |..+++....+    ..|..+|+
T Consensus       289 ~~~~~~~~l~~~d~~~~~~~~~~~~l~~-------~~----~~~~~s~~-~~~----g~~l~~~t~~~~a~~~~L~~~d~  352 (751)
T 2xe4_A          289 SQSPETAEVHLLDLRKGNAHNTLEIVRP-------RE----KGVRYDVQ-MHG----TSHLVILTNEGGAVNHKLLIAPR  352 (751)
T ss_dssp             EECSSCEEEEEEESSSCTTCCCEEESSC-------CC----TTCCEEEE-EET----TTEEEEEECTTTCTTCEEEEEET
T ss_pred             ecCCCCceEEEEECCCCCCCceeEEeec-------CC----CCceEEEe-eee----CCEEEEEeCCCCCCCcEEEEEcC
Confidence            533 23568889988753 22  33321       11    22333332 332    33244444443    35667776


Q ss_pred             cCCCCceEe-eecCCc--ceEEEEEeCCCCeEEEecCCCcEE--EEec
Q 021291          239 RNPGIPLTA-MKVHLE--PVLCLSIDESCNGGISGGADQKIV--LYNL  281 (314)
Q Consensus       239 ~~~~~~~~~-~~~h~~--~v~~~~~~~~~~~l~s~s~dg~i~--iw~~  281 (314)
                      .++ ..... +..+..  .+..+.+.. +.++++...++..+  ++++
T Consensus       353 ~~~-~~~~~~li~~~~~~~l~~~~~~~-~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          353 GQP-SDWSHVLVDHSEDVFMESIAVRS-NYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             TST-TCCCCEEECCCSSEEEEEEEECS-SEEEEEEEETTEEEEEEEEC
T ss_pred             CCc-ccceeeEECCCCCcEEEEEEEEC-CEEEEEEEeCCEEEEEEEec
Confidence            642 22222 333333  455666653 34556777777644  4554

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.45  E-value=3.9e-05  Score=66.88  Aligned_cols=60  Identities=10%  Similarity=-0.094  Sum_probs=42.4

Q ss_pred             cCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEee
Q 021291          229 EDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFG  290 (314)
Q Consensus       229 ~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~  290 (314)
                      .+|.|..||..+ ++.+.++... ..+....+...+..++.++.||.|+.||.++++.++..
T Consensus       442 ~~g~l~a~D~~t-G~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~  501 (571)
T 2ad6_A          442 EMGQIRAFDLTT-GKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNF  501 (571)
T ss_dssp             CCEEEEEECTTT-CCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCCeEEEEECCC-CCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEE
Confidence            357899999998 7777666532 22333333333446777899999999999999998864

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.40  E-value=0.00056  Score=56.57  Aligned_cols=206  Identities=6%  Similarity=-0.109  Sum_probs=119.6

Q ss_pred             CceeEEEEccC-CCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeE-EEeecCCeEEEEeCCCC
Q 021291           19 ASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKV-ISQGRDGTVKCWDIENG   96 (314)
Q Consensus        19 ~~v~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~v~iwd~~~~   96 (314)
                      ..+..++|++. +.++++-...+.|..++.+.......+....  .....+++.+  .+..| ++-...+.|.+.++...
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~--~~p~glavd~--~~g~lY~~d~~~~~I~~~~~dg~  191 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL--ESPGGLAVDW--VHDKLYWTDSGTSRIEVANLDGA  191 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSC--SCCCCEEEET--TTTEEEEEETTTTEEEECBTTSC
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCC--CCccEEEEEe--CCCeEEEEcCCCCeEEEEeCCCC
Confidence            45678999974 4455566677899999987655433332222  2256788876  44444 45555678888887654


Q ss_pred             CCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCc-CeEE
Q 021291           97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL-SEVE  175 (314)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d-~~i~  175 (314)
                      ...   . ........     +.                                 ++++.|.+..++.+ -..+ +.|.
T Consensus       192 ~~~---~-l~~~~l~~-----P~---------------------------------giavdp~~g~ly~t-d~~~~~~I~  228 (386)
T 3v65_B          192 HRK---V-LLWQSLEK-----PR---------------------------------AIALHPMEGTIYWT-DWGNTPRIE  228 (386)
T ss_dssp             SCE---E-EECSSCSC-----EE---------------------------------EEEEETTTTEEEEE-ECSSSCEEE
T ss_pred             ceE---E-eecCCCCC-----Cc---------------------------------EEEEEcCCCeEEEe-ccCCCCEEE
Confidence            211   1 11100000     00                                 05677777766654 3334 7888


Q ss_pred             EEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcce
Q 021291          176 IWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPV  255 (314)
Q Consensus       176 vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v  255 (314)
                      .+++...........            .-.....++ ++|++  ++ ++++-...+.|..+|+.. ......+.......
T Consensus       229 r~~~dG~~~~~~~~~------------~~~~PnGla-vd~~~--~~-lY~aD~~~~~I~~~d~dG-~~~~~~~~~~~~~P  291 (386)
T 3v65_B          229 ASSMDGSGRRIIADT------------HLFWPNGLT-IDYAG--RR-MYWVDAKHHVIERANLDG-SHRKAVISQGLPHP  291 (386)
T ss_dssp             EEETTSCSCEEEECS------------SCSCEEEEE-EEGGG--TE-EEEEETTTTEEEEECTTS-CSCEEEECSSCSSE
T ss_pred             EEeCCCCCcEEEEEC------------CCCCeeeEE-EeCCC--CE-EEEEECCCCEEEEEeCCC-CeeEEEEECCCCCc
Confidence            888764332222221            122456676 98862  33 566666778899999874 33333333334456


Q ss_pred             EEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291          256 LCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF  289 (314)
Q Consensus       256 ~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~  289 (314)
                      ..|++.. +..+++-...+.|..++..+++.+..
T Consensus       292 ~giav~~-~~ly~td~~~~~V~~~~~~~G~~~~~  324 (386)
T 3v65_B          292 FAITVFE-DSLYWTDWHTKSINSANKFTGKNQEI  324 (386)
T ss_dssp             EEEEEET-TEEEEEETTTTEEEEEETTTCCSCEE
T ss_pred             eEEEEEC-CEEEEeeCCCCeEEEEECCCCcceEE
Confidence            7888854 45566777788899998666665444

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.39  E-value=0.00018  Score=63.99  Aligned_cols=76  Identities=14%  Similarity=0.174  Sum_probs=55.9

Q ss_pred             eEEEEccCCCEEEEecCCCe-------------------EEEEeCCCCeEEEEEeccCCc-------ccEEEEEEcccCC
Q 021291           22 TDVCFHQTKPILFAGTTGGE-------------------LRIWDTVQHRTVSSSWVHSAA-------HGIVSVATGPSIG   75 (314)
Q Consensus        22 ~~~~~~~~~~~l~s~~~dg~-------------------v~iwd~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~   75 (314)
                      ..+++.++..+++.++.++.                   |..+|.++|+.+..++...+.       .+.....+..  +
T Consensus       233 ~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~--~  310 (668)
T 1kv9_A          233 DSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNI--D  310 (668)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE--T
T ss_pred             cceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEecc--C
Confidence            35788888888888887763                   999999999999888753211       1233333333  5


Q ss_pred             CC---eEEEeecCCeEEEEeCCCCCCC
Q 021291           76 LN---KVISQGRDGTVKCWDIENGGLS   99 (314)
Q Consensus        76 ~~---~l~s~~~dg~v~iwd~~~~~~~   99 (314)
                      ++   .++.++.+|.+.++|..+++.+
T Consensus       311 G~~~~~v~~~~~~G~l~~lD~~tG~~l  337 (668)
T 1kv9_A          311 GKPRKVLMQAPKNGFFYVLDRTNGKLI  337 (668)
T ss_dssp             TEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             CcEEEEEEEECCCCEEEEEECCCCCEe
Confidence            44   6889999999999999999764

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.32  E-value=0.00018  Score=64.02  Aligned_cols=211  Identities=15%  Similarity=0.088  Sum_probs=122.5

Q ss_pred             CCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcc--------cE-EEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCC
Q 021291           30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAH--------GI-VSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSS  100 (314)
Q Consensus        30 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~--------~v-~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~  100 (314)
                      +..|+.++.++.|.-+|..+|+.+.++.......        .+ ..+++    .+..++.++.|+.|..+|..+++.+.
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W  141 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL----WGDKVYVGTLDGRLIALDAKTGKAIW  141 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----EBTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE----ECCEEEEEcCCCEEEEEECCCCCEee
Confidence            4567778889999999999999998886432110        00 11223    23678888899999999999998654


Q ss_pred             CCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeec----CcCeEEE
Q 021291          101 NPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE----QLSEVEI  176 (314)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----~d~~i~v  176 (314)
                          ........ ........                                ..+  .+..+++.++.    .++.|..
T Consensus       142 ----~~~~~~~~-~~~~~~~~--------------------------------P~v--~~~~v~vg~~~~~~~~~g~v~a  182 (668)
T 1kv9_A          142 ----SQQTTDPA-KPYSITGA--------------------------------PRV--VKGKVIIGNGGAEYGVRGFVSA  182 (668)
T ss_dssp             ----EEECSCTT-SSCBCCSC--------------------------------CEE--ETTEEEECCBCTTTCCBCEEEE
T ss_pred             ----eeccCCCC-CcceecCC--------------------------------CEE--ECCEEEEeCCCCCcCCCCEEEE
Confidence                22211000 00000000                                001  12233332221    2589999


Q ss_pred             EecCCCceeeeecccccCCCCCcCC-------C-----------CCcee-eeEEEecCCCCCCceEEEEeecCC------
Q 021291          177 WDLNTAERCTRLHQNSCGGSPNFSS-------K-----------GRGMC-MAVQAYLPSKSQGFVNVLAGYEDG------  231 (314)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~~~~h~~-------~-----------~~~~~-~~~~~~~p~~~~g~~~l~~g~~dg------  231 (314)
                      +|.++++.+-.+.............       +           ..+.+ ..+. +.|+   +. .++.+..++      
T Consensus       183 ~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a-~d~~---~~-~vy~~~~~g~~w~~~  257 (668)
T 1kv9_A          183 YDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMA-YDPE---LD-LLYVGTGNGSPWNRE  257 (668)
T ss_dssp             EETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEE-EETT---TT-EEEEECCCEESSCHH
T ss_pred             EECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceE-EcCC---CC-EEEEeCCCCCccccC
Confidence            9999999887765210000000000       0           00011 1233 7776   33 677776665      


Q ss_pred             -------------cEEEEEccCCCCceEeeec--CC-------cceEEEEEeCCCC---eEEEecCCCcEEEEecCCCee
Q 021291          232 -------------SILVWDIRNPGIPLTAMKV--HL-------EPVLCLSIDESCN---GGISGGADQKIVLYNLDHSTY  286 (314)
Q Consensus       232 -------------~i~vwd~~~~~~~~~~~~~--h~-------~~v~~~~~~~~~~---~l~s~s~dg~i~iw~~~~~~~  286 (314)
                                   .|..+|.++ ++.+..++.  |.       .+.....+..+|+   .|+.++.+|.++++|..+++.
T Consensus       258 ~~~~~~gd~l~~~~v~AlD~~t-G~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  336 (668)
T 1kv9_A          258 VRSPGGGDNLYLSSILAIRPDT-GKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL  336 (668)
T ss_dssp             HHSTTCCCCTTTTEEEEECTTT-CCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             CCCCCCCCceeeeeEEEEcCCC-CceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE
Confidence                         399999998 887766653  22       2333333334554   689999999999999999998


Q ss_pred             eEe
Q 021291          287 VLF  289 (314)
Q Consensus       287 ~~~  289 (314)
                      +..
T Consensus       337 l~~  339 (668)
T 1kv9_A          337 ISA  339 (668)
T ss_dssp             EEE
T ss_pred             ecc
Confidence            843

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.32  E-value=0.00012  Score=64.08  Aligned_cols=60  Identities=12%  Similarity=-0.079  Sum_probs=40.8

Q ss_pred             cCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEee
Q 021291          229 EDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFG  290 (314)
Q Consensus       229 ~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~  290 (314)
                      .+|.|..||+.+ ++.+-+... ..++..-.....+.+++.++.||.++.||.++++.++..
T Consensus       451 ~~G~l~A~D~~t-G~~~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~  510 (599)
T 1w6s_A          451 GLGQIKAYNAIT-GDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKF  510 (599)
T ss_dssp             CCEEEEEECTTT-CCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CcCeEEEEECCC-CCEEeEecC-CCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEe
Confidence            347899999988 776665542 122221112223446777999999999999999999864

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.27  E-value=0.00096  Score=53.55  Aligned_cols=197  Identities=13%  Similarity=0.152  Sum_probs=107.7

Q ss_pred             CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEccc--CCCC---eEEEeec---CCeEEEEeCC--CCCC
Q 021291           29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS--IGLN---KVISQGR---DGTVKCWDIE--NGGL   98 (314)
Q Consensus        29 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~---~l~s~~~---dg~v~iwd~~--~~~~   98 (314)
                      ...+++.....+-+.+||+ +|+.++.+..    ..+..+..-|.  ..++   ++++...   +++|.+|++.  ++++
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~----g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l  113 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT----GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL  113 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC----SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC----CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCce
Confidence            3456666667788999999 7899888754    22666666550  0112   2233333   5789999774  3321


Q ss_pred             CCCCeeeeecc--eeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCcee--ccCCCceEEEeecCcCeE
Q 021291           99 SSNPSLTIKTN--SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDV--PAEGPKYMAVAGEQLSEV  174 (314)
Q Consensus        99 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~d~~i  174 (314)
                           ..+...  +....                                 +..-.++|+  ++....+.+.....+|.+
T Consensus       114 -----~~i~~~~~pv~t~---------------------------------~~~pyGlcly~~~~~g~~yafV~~k~G~~  155 (355)
T 3amr_A          114 -----QSMTDPDHPIATA---------------------------------INEVYGFTLYHSQKTGKYYAMVTGKEGEF  155 (355)
T ss_dssp             -----EECSCTTSCEECC---------------------------------CSSCCCEEEEECTTTCCEEEEEECSSSEE
T ss_pred             -----eeccccccCcCCC---------------------------------CCCeeEEEEEecCCCCcEEEEEECCCCeE
Confidence                 111000  00000                                 000000445  554443333345557999


Q ss_pred             EEEecC-------CCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCC----CC
Q 021291          175 EIWDLN-------TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP----GI  243 (314)
Q Consensus       175 ~vwd~~-------~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~----~~  243 (314)
                      ..|++.       +.+.+++|..             .+.+-.+. ..+.   .. .|+.+-++.-|..++.+-.    .+
T Consensus       156 ~q~~l~~~~~g~~~~~lVR~f~l-------------gsq~Egcv-vDd~---~g-~Lyv~eEd~GIw~~da~p~~~~~~~  217 (355)
T 3amr_A          156 EQYELKADKNGYISGKKVRAFKM-------------NSQTEGMA-ADDE---YG-RLYIAEEDEAIWKFSAEPDGGSNGT  217 (355)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEEC-------------SSCEEEEE-EETT---TT-EEEEEETTTEEEEEECSTTSCSCCE
T ss_pred             EEEEEEeCCCCcccceEEEEecC-------------CCCcceEE-EcCC---CC-eEEEecccceEEEEeCCcCCCCCce
Confidence            999883       3345666663             12333444 6664   22 7899988877766775521    23


Q ss_pred             ceEeee-cC-CcceEEEEE--eCCCC-eEEEec-CCCcEEEEecC-CCee
Q 021291          244 PLTAMK-VH-LEPVLCLSI--DESCN-GGISGG-ADQKIVLYNLD-HSTY  286 (314)
Q Consensus       244 ~~~~~~-~h-~~~v~~~~~--~~~~~-~l~s~s-~dg~i~iw~~~-~~~~  286 (314)
                      .+..+. ++ ...+..|++  .++++ +|++++ .+..+.+||.+ +.+.
T Consensus       218 ~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~  267 (355)
T 3amr_A          218 VIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKY  267 (355)
T ss_dssp             EEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCE
T ss_pred             EEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcE
Confidence            444332 22 236888888  45544 554444 67799999997 4443

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.27  E-value=0.00012  Score=63.90  Aligned_cols=59  Identities=19%  Similarity=0.138  Sum_probs=41.7

Q ss_pred             CCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEee
Q 021291          230 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFG  290 (314)
Q Consensus       230 dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~  290 (314)
                      +|.|..||+.+ ++.+-+..... ++..-.....+.+++.++.||.++.||.++++.++..
T Consensus       465 ~G~l~A~D~~t-G~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~  523 (582)
T 1flg_A          465 VGSLRAMDPVS-GKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKF  523 (582)
T ss_dssp             SEEEEEECTTT-CCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cceEEEEECCC-CCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEe
Confidence            67899999998 77766655322 2222122223446778999999999999999999864

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.22  E-value=0.0013  Score=53.47  Aligned_cols=243  Identities=5%  Similarity=-0.142  Sum_probs=124.5

Q ss_pred             CceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEE-EeecCCeEEEEeCCCCC
Q 021291           19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCWDIENGG   97 (314)
Q Consensus        19 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~v~iwd~~~~~   97 (314)
                      +..+|.+..+++ +|+.+. ...|+..++........+...   ..+..++|.+  ..+.|+ +-...+.|..+++....
T Consensus        34 d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~~~---~~~~~l~~d~--~~~~ly~~D~~~~~I~r~~~~g~~  106 (349)
T 3v64_C           34 DRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNNL---ENAIALDFHH--RRELVFWSDVTLDRILRANLNGSN  106 (349)
T ss_dssp             TSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEECSC---SCEEEEEEET--TTTEEEEEETTTTEEEEEETTSCS
T ss_pred             CCCcccccccCc-eeEeec-ccceEEEeCCCCeeEEeecCC---CceEEEEEec--cccEEEEEeccCCceEEEecCCCC
Confidence            445666666644 444333 345888888765544433333   3378999997  545555 44457889999988654


Q ss_pred             CCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCC--CC-CceeccCCCceEEEeecCc-Ce
Q 021291           98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLC--DS-KDDVPAEGPKYMAVAGEQL-SE  173 (314)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~g~~d-~~  173 (314)
                      ...  +............+....................+.............  .. ++++.|.+..++.+ -..+ +.
T Consensus       107 ~~~--~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~t-d~~~~~~  183 (349)
T 3v64_C          107 VEE--VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWT-DWGNTPR  183 (349)
T ss_dssp             CEE--EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEE-ECSSSCE
T ss_pred             ceE--EEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEe-ccCCCCE
Confidence            211  111111111111111111111111111112222222221111111111  11 18888877766654 3334 78


Q ss_pred             EEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCc
Q 021291          174 VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE  253 (314)
Q Consensus       174 i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~  253 (314)
                      |..+++.... ...+..       .    .-.....++ ++|++  +. +.++-...+.|..+|++. ......+.....
T Consensus       184 I~r~~~dG~~-~~~~~~-------~----~~~~PnGla-~d~~~--~~-lY~aD~~~~~I~~~~~dG-~~~~~~~~~~~~  246 (349)
T 3v64_C          184 IEASSMDGSG-RRIIAD-------T----HLFWPNGLT-IDYAG--RR-MYWVDAKHHVIERANLDG-SHRKAVISQGLP  246 (349)
T ss_dssp             EEEEETTSCS-CEESCC-------S----SCSCEEEEE-EETTT--TE-EEEEETTTTEEEEEETTS-CSCEEEECSSCS
T ss_pred             EEEEeCCCCC-cEEEEE-------C----CCCCcceEE-EeCCC--CE-EEEEECCCCEEEEEeCCC-CceEEEEeCCCC
Confidence            8888876433 222220       0    122456676 99862  33 556666678899999874 332223333344


Q ss_pred             ceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291          254 PVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF  289 (314)
Q Consensus       254 ~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~  289 (314)
                      ....|++. ++..+++-...+.|..++..+++....
T Consensus       247 ~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~  281 (349)
T 3v64_C          247 HPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEI  281 (349)
T ss_dssp             SEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEE
T ss_pred             CceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEE
Confidence            56788885 445566666778898888666655443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.21  E-value=0.00099  Score=53.52  Aligned_cols=111  Identities=13%  Similarity=-0.013  Sum_probs=65.3

Q ss_pred             ceeccCCCceEEEeecCcCeEEEEecCCCc--eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEee---
Q 021291          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY---  228 (314)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~--~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~---  228 (314)
                      ++++++++.+++ +-..++.|.+|++....  ....+..            ..+ ...+. +.++   |..+++...   
T Consensus       190 ia~~~dg~~lyv-~d~~~~~I~~~~~~~~~~~~~~~~~~------------~~g-P~gi~-~d~~---G~l~va~~~~~~  251 (322)
T 2fp8_A          190 AEVSADSSFVLV-AEFLSHQIVKYWLEGPKKGTAEVLVK------------IPN-PGNIK-RNAD---GHFWVSSSEELD  251 (322)
T ss_dssp             EEECTTSSEEEE-EEGGGTEEEEEESSSTTTTCEEEEEE------------CSS-EEEEE-ECTT---SCEEEEEEEETT
T ss_pred             eEECCCCCEEEE-EeCCCCeEEEEECCCCcCCccceEEe------------CCC-CCCeE-ECCC---CCEEEEecCccc
Confidence            679999886665 34446889999987532  1111210            112 44555 7776   663444332   


Q ss_pred             ------cCCcEEEEEccCCCCceEeeecCC----cceEEEEEeCCCCeEEEecCCCcEEEEecCCCe
Q 021291          229 ------EDGSILVWDIRNPGIPLTAMKVHL----EPVLCLSIDESCNGGISGGADQKIVLYNLDHST  285 (314)
Q Consensus       229 ------~dg~i~vwd~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~  285 (314)
                            ..+.|..+|..  ++.+..+....    ..++.+++. +++++++....+.|.++++....
T Consensus       252 ~~~~~~~~~~v~~~d~~--G~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~~~~  315 (322)
T 2fp8_A          252 GNMHGRVDPKGIKFDEF--GNILEVIPLPPPFAGEHFEQIQEH-DGLLYIGTLFHGSVGILVYDKKG  315 (322)
T ss_dssp             SSTTSCEEEEEEEECTT--SCEEEEEECCTTTTTSCCCEEEEE-TTEEEEECSSCSEEEEEEC----
T ss_pred             ccccCCCccEEEEECCC--CCEEEEEECCCCCccccceEEEEe-CCEEEEeecCCCceEEEeccccc
Confidence                  14668888864  66666665432    346677764 56666776678889999886443

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.19  E-value=0.0011  Score=57.97  Aligned_cols=77  Identities=14%  Similarity=0.145  Sum_probs=50.3

Q ss_pred             cCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeec
Q 021291          171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV  250 (314)
Q Consensus       171 d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~  250 (314)
                      +|.|.-||+.+++.+-+.+.       +.  +..+....   .  .   +. +++.|+.|+.++.||.++ ++.+.+++.
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~-------~~--~~~~g~~~---t--a---gg-lvf~g~~dg~l~A~D~~t-G~~lW~~~~  525 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKE-------HL--PLWAGVLA---T--A---GN-LVFTGTGDGYFKAFDAKS-GKELWKFQT  525 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEE-------SS--CCCSCCEE---E--T---TT-EEEEECTTSEEEEEETTT-CCEEEEEEC
T ss_pred             cceEEEEECCCCCEEEEecC-------CC--CCcccceE---e--C---CC-EEEEECCCCcEEEEECCC-CCEEEEecC
Confidence            58899999999998776652       11  11111111   1  1   33 677799999999999998 888888775


Q ss_pred             CCcce-EEEEEeCCCCe
Q 021291          251 HLEPV-LCLSIDESCNG  266 (314)
Q Consensus       251 h~~~v-~~~~~~~~~~~  266 (314)
                      ....+ .-+.|..+|+.
T Consensus       526 ~~g~~a~P~~y~~~G~q  542 (582)
T 1flg_A          526 GSGIVSPPITWEQDGEQ  542 (582)
T ss_dssp             SSCCCSCCEEEEETTEE
T ss_pred             CCCcccCceEEEECCEE
Confidence            33221 22566667763

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.17  E-value=0.0013  Score=51.21  Aligned_cols=180  Identities=9%  Similarity=0.023  Sum_probs=105.7

Q ss_pred             CceeEEEEccCCC-EEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeec---CCeEEEEeCC
Q 021291           19 ASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR---DGTVKCWDIE   94 (314)
Q Consensus        19 ~~v~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~v~iwd~~   94 (314)
                      .....+++++++. ++++-...+.|.+++.+............  .....+++.|  ++..|+.+..   .+.|..+++.
T Consensus        79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~--~~P~~i~vd~--~~g~lyv~~~~~~~~~I~~~~~d  154 (267)
T 1npe_A           79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGL--VNPRGIVTDP--VRGNLYWTDWNRDNPKIETSHMD  154 (267)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC--SSEEEEEEET--TTTEEEEEECCSSSCEEEEEETT
T ss_pred             CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCC--CCccEEEEee--CCCEEEEEECCCCCcEEEEEecC
Confidence            4678999998654 45555667899999986433222222111  3368999999  7676665554   3678888876


Q ss_pred             CCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeE
Q 021291           95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEV  174 (314)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i  174 (314)
                      .... .    .+......    .+..                                 +++++++..++++ ....+.|
T Consensus       155 g~~~-~----~~~~~~~~----~P~g---------------------------------ia~d~~~~~lyv~-d~~~~~I  191 (267)
T 1npe_A          155 GTNR-R----ILAQDNLG----LPNG---------------------------------LTFDAFSSQLCWV-DAGTHRA  191 (267)
T ss_dssp             SCCC-E----EEECTTCS----CEEE---------------------------------EEEETTTTEEEEE-ETTTTEE
T ss_pred             CCCc-E----EEEECCCC----CCcE---------------------------------EEEcCCCCEEEEE-ECCCCEE
Confidence            4321 0    01000000    0000                                 6688888777664 4446899


Q ss_pred             EEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCC-c
Q 021291          175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL-E  253 (314)
Q Consensus       175 ~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~-~  253 (314)
                      .++|+........+.        +     ......++ .. .   +. ++++...++.|.++|..+ ++.+..+.... .
T Consensus       192 ~~~~~~g~~~~~~~~--------~-----~~~P~gi~-~d-~---~~-lyva~~~~~~v~~~d~~~-g~~~~~i~~g~~~  251 (267)
T 1npe_A          192 ECLNPAQPGRRKVLE--------G-----LQYPFAVT-SY-G---KN-LYYTDWKTNSVIAMDLAI-SKEMDTFHPHKQT  251 (267)
T ss_dssp             EEEETTEEEEEEEEE--------C-----CCSEEEEE-EE-T---TE-EEEEETTTTEEEEEETTT-TEEEEEECCSSCC
T ss_pred             EEEecCCCceEEEec--------C-----CCCceEEE-Ee-C---CE-EEEEECCCCeEEEEeCCC-CCceEEEcccccc
Confidence            999987544332222        1     11223443 32 1   33 555655678999999987 77777776433 2


Q ss_pred             ceEEEEEeCCCC
Q 021291          254 PVLCLSIDESCN  265 (314)
Q Consensus       254 ~v~~~~~~~~~~  265 (314)
                      ....+++.|++.
T Consensus       252 ~p~gi~~~~~~~  263 (267)
T 1npe_A          252 RLYGITIALSQC  263 (267)
T ss_dssp             CCCCEEEECSCC
T ss_pred             ccceeeecCccC
Confidence            467788877754

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.17  E-value=0.00087  Score=58.62  Aligned_cols=212  Identities=13%  Similarity=0.075  Sum_probs=119.9

Q ss_pred             CCEEEEecC-CCeEEEEeC-CCCeEEEEEeccCCcc--c-------EEEEEEcccCCCCe----EEEeecCCeEEEEeCC
Q 021291           30 KPILFAGTT-GGELRIWDT-VQHRTVSSSWVHSAAH--G-------IVSVATGPSIGLNK----VISQGRDGTVKCWDIE   94 (314)
Q Consensus        30 ~~~l~s~~~-dg~v~iwd~-~~~~~~~~~~~~~~~~--~-------v~~~~~~~~~~~~~----l~s~~~dg~v~iwd~~   94 (314)
                      +..|+.++. ++.|.-+|. .+|+.+.++.......  +       ...+++.|  .+..    ++.++.|+.|.-+|..
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p--~~g~~~~rV~v~t~dg~l~AlDa~  139 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWP--GDGKTPALILKTQLDGNVAALNAE  139 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEEC--CCSSSCCEEEEECTTSEEEEEETT
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEe--cCCcceeEEEEEcCCCEEEEEECC
Confidence            446667777 899999999 8999998876443210  0       12345544  3344    8888899999999999


Q ss_pred             CCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeec-----
Q 021291           95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE-----  169 (314)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----  169 (314)
                      +++.+.    ........ ........                                ..+ .+ ..+++ .++     
T Consensus       140 TG~~~W----~~~~~~~~-~~~~~~ss--------------------------------P~v-~~-g~V~v-g~~g~e~g  179 (599)
T 1w6s_A          140 TGETVW----KVENSDIK-VGSTLTIA--------------------------------PYV-VK-DKVII-GSSGAELG  179 (599)
T ss_dssp             TCCEEE----EEECCCGG-GTCBCCSC--------------------------------CEE-ET-TEEEE-CCBCGGGT
T ss_pred             CCCEEE----eecCCCCC-ccceeecC--------------------------------CEE-EC-CEEEE-EecccccC
Confidence            997644    22111000 00000000                                001 12 23332 222     


Q ss_pred             CcCeEEEEecCCCceeeeecccccC------CCCCcCCC-------------------CCceee-eEEEecCCCCCCceE
Q 021291          170 QLSEVEIWDLNTAERCTRLHQNSCG------GSPNFSSK-------------------GRGMCM-AVQAYLPSKSQGFVN  223 (314)
Q Consensus       170 ~d~~i~vwd~~~~~~~~~~~~~~~~------~~~~h~~~-------------------~~~~~~-~~~~~~p~~~~g~~~  223 (314)
                      .++.|+-+|.++++.+-++......      +......+                   ..+.++ ... +.+.   .. +
T Consensus       180 ~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a-~d~~---~g-~  254 (599)
T 1w6s_A          180 VRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYA-YDPG---TN-L  254 (599)
T ss_dssp             CCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCE-EETT---TT-E
T ss_pred             CCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCcccccee-EeCC---CC-E
Confidence            3689999999999987766531100      00000000                   000011 122 5554   22 5


Q ss_pred             EEEeecC----------------CcEEEEEccCCCCceEeeecCC----------cceEEEEEe-CCC---CeEEEecCC
Q 021291          224 VLAGYED----------------GSILVWDIRNPGIPLTAMKVHL----------EPVLCLSID-ESC---NGGISGGAD  273 (314)
Q Consensus       224 l~~g~~d----------------g~i~vwd~~~~~~~~~~~~~h~----------~~v~~~~~~-~~~---~~l~s~s~d  273 (314)
                      ++.+..+                +.|..+|.++ ++.+-.++...          .++. +... .+|   ..++.++.+
T Consensus       255 vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~T-G~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~  332 (599)
T 1w6s_A          255 IYFGTGNPAPWNETMRPGDNKWTMTIFGRDADT-GEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRN  332 (599)
T ss_dssp             EEEECCCCSCSCGGGSCSCCTTSSEEEEEETTT-CCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTT
T ss_pred             EEEeCCCCccccCcccCCCccccceEEEEeCCC-CceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCC
Confidence            5555544                3799999998 77776665321          2222 2222 567   467888999


Q ss_pred             CcEEEEecCCCeeeEee
Q 021291          274 QKIVLYNLDHSTYVLFG  290 (314)
Q Consensus       274 g~i~iw~~~~~~~~~~~  290 (314)
                      |.++++|.++++.++..
T Consensus       333 G~l~~lD~~tG~~lw~~  349 (599)
T 1w6s_A          333 GIVYTLDRTDGALVSAN  349 (599)
T ss_dssp             SEEEEEETTTCCEEEEE
T ss_pred             cEEEEEECCCCCEeecc
Confidence            99999999999988753

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.07  E-value=0.0011  Score=57.93  Aligned_cols=210  Identities=13%  Similarity=0.103  Sum_probs=116.1

Q ss_pred             CCEEEEecC-CCeEEEEeC-CCCeEEEEEeccCCccc--------E-EEEEEcccCCCCeEEEeecCCeEEEEeCCCCCC
Q 021291           30 KPILFAGTT-GGELRIWDT-VQHRTVSSSWVHSAAHG--------I-VSVATGPSIGLNKVISQGRDGTVKCWDIENGGL   98 (314)
Q Consensus        30 ~~~l~s~~~-dg~v~iwd~-~~~~~~~~~~~~~~~~~--------v-~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~   98 (314)
                      +..++.++. ++.|.-+|. .+|+.+..+........        + ..+++    .+..++.++.|+.|..+|..+++.
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~  137 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY----GAGQIVKKQANGHLLALDAKTGKI  137 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCE
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE----ECCEEEEEeCCCEEEEEECCCCCE
Confidence            446666677 899999999 89999988754321100        0 11222    246788888899999999999976


Q ss_pred             CCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeec----CcCeE
Q 021291           99 SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE----QLSEV  174 (314)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----~d~~i  174 (314)
                      +.    ........ ........                                ..+  .+..+++.+..    .++.|
T Consensus       138 ~W----~~~~~~~~-~~~~~~~~--------------------------------P~v--~~g~v~vg~~~~~~~~~g~v  178 (571)
T 2ad6_A          138 NW----EVEVCDPK-VGSTLTQA--------------------------------PFV--AKDTVLMGCSGAELGVRGAV  178 (571)
T ss_dssp             EE----EEECCCGG-GTCBCCSC--------------------------------CEE--ETTEEEEECBCGGGTCCCEE
T ss_pred             EE----EecCCCCC-ccceeccC--------------------------------CEE--ECCEEEEEecCCccCCCCEE
Confidence            44    22111000 00000000                                001  12334432221    16899


Q ss_pred             EEEecCCCceeeeecccccC------CCCC----cC---------------CCCCcee-eeEEEecCCCCCCceEEEEee
Q 021291          175 EIWDLNTAERCTRLHQNSCG------GSPN----FS---------------SKGRGMC-MAVQAYLPSKSQGFVNVLAGY  228 (314)
Q Consensus       175 ~vwd~~~~~~~~~~~~~~~~------~~~~----h~---------------~~~~~~~-~~~~~~~p~~~~g~~~l~~g~  228 (314)
                      ..+|.++++.+-++......      +...    ..               ....+.+ ..+. +.|.  .+  .++.+.
T Consensus       179 ~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a-~d~~--~g--~vy~~~  253 (571)
T 2ad6_A          179 NAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYA-YDPK--LN--LFYYGS  253 (571)
T ss_dssp             EEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCE-EETT--TT--EEEEEC
T ss_pred             EEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEE-EcCC--CC--eEEEEC
Confidence            99999999987766531100      0000    00               0000001 1233 6654  13  444444


Q ss_pred             cC----------------CcEEEEEccCCCCceEeeec--C--------CcceEEEEEeCCCC---eEEEecCCCcEEEE
Q 021291          229 ED----------------GSILVWDIRNPGIPLTAMKV--H--------LEPVLCLSIDESCN---GGISGGADQKIVLY  279 (314)
Q Consensus       229 ~d----------------g~i~vwd~~~~~~~~~~~~~--h--------~~~v~~~~~~~~~~---~l~s~s~dg~i~iw  279 (314)
                      .+                +.|..+|.++ ++.+..++.  |        ..++. +....+|+   .++.++.+|.++++
T Consensus       254 g~~~~~~~~~~~gd~~y~~~v~Ald~~t-G~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~l  331 (571)
T 2ad6_A          254 GNPAPWNETMRPGDNKWTMTIWGRDLDT-GMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTL  331 (571)
T ss_dssp             CCCSCSCGGGSCSCCTTTTEEEEEETTT-CCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEE
T ss_pred             CCCccccCCccCCCceeEEEEEEEecCC-CcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEE
Confidence            22                3599999998 777766652  2        12222 22234674   57788899999999


Q ss_pred             ecCCCeeeEe
Q 021291          280 NLDHSTYVLF  289 (314)
Q Consensus       280 ~~~~~~~~~~  289 (314)
                      |.++++.++.
T Consensus       332 D~~tG~~~w~  341 (571)
T 2ad6_A          332 NRENGNLIVA  341 (571)
T ss_dssp             ETTTCCEEEE
T ss_pred             ECCCCCEEee
Confidence            9999998875

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.00  E-value=0.0044  Score=51.96  Aligned_cols=157  Identities=11%  Similarity=0.067  Sum_probs=89.5

Q ss_pred             ceeEEEEcc-CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC-C----eEEEEeC
Q 021291           20 SVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD-G----TVKCWDI   93 (314)
Q Consensus        20 ~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g----~v~iwd~   93 (314)
                      ....++++| ++..|+.+...+.|+.+|.+.++...... ..  .....|+|++  +++.|+.+... +    .+...+.
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~--~~P~~ia~d~--~G~~lyvad~~~~~~~~~v~~~~~  212 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GL--SKVRTICWTH--EADSMIITNDQNNNDRPNNYILTR  212 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CC--SCEEEEEECT--TSSEEEEEECCSCTTSEEEEEEEG
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CC--CCcceEEEeC--CCCEEEEEeCCCCcccceEEEEeC
Confidence            457899997 34455555544889999988765544333 22  4478999999  88866665542 1    2333332


Q ss_pred             CCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCe
Q 021291           94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSE  173 (314)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~  173 (314)
                       .+....  ...+.                                       .+.....++++|++..+++ +-..++.
T Consensus       213 -~g~~~~--~~~l~---------------------------------------~~~~p~giavdp~~g~lyv-~d~~~~~  249 (430)
T 3tc9_A          213 -ESGFKV--ITELT---------------------------------------KGQNCNGAETHPINGELYF-NSWNAGQ  249 (430)
T ss_dssp             -GGTSCS--EEEEE---------------------------------------ECSSCCCEEECTTTCCEEE-EETTTTE
T ss_pred             -CCceee--eeeec---------------------------------------cCCCceEEEEeCCCCEEEE-EECCCCE
Confidence             222211  00000                                       0001111678885445555 4444688


Q ss_pred             EEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEcc
Q 021291          174 VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR  239 (314)
Q Consensus       174 i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~  239 (314)
                      |..+|...+........       +    .......++ |+|+   |+.++++-..++.|..++.+
T Consensus       250 V~~~~~~~~~~~~~~~~-------~----~~~~P~gia-~~pd---G~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          250 VFRYDFTTQETTPLFTI-------Q----DSGWEFHIQ-FHPS---GNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             EEEEETTTTEEEEEEEC-------S----SSSCCEEEE-ECTT---SSEEEEEETTTTEEEEEEEE
T ss_pred             EEEEECCCCcEEEEEEc-------C----CCCcceeEE-EcCC---CCEEEEEECCCCEEEEEeCC
Confidence            99999986654222221       0    112345666 9998   55355566677889998876

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.99  E-value=0.00082  Score=59.79  Aligned_cols=73  Identities=8%  Similarity=0.089  Sum_probs=49.0

Q ss_pred             EEEEcc-CCCEEEEecCCC-----------eEEEEeCCCCeEE--EEEeccCCcccEEEEEEcccCCCCeEEEeec-CCe
Q 021291           23 DVCFHQ-TKPILFAGTTGG-----------ELRIWDTVQHRTV--SSSWVHSAAHGIVSVATGPSIGLNKVISQGR-DGT   87 (314)
Q Consensus        23 ~~~~~~-~~~~l~s~~~dg-----------~v~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~   87 (314)
                      ++++.+ ++++++.|+.+.           .+.+||..+++..  ..+..... ....++++..  ++..++.|+. +..
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~-~~~~~~~~~~--~g~lyv~GG~~~~~  266 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHD-MFCPGISMDG--NGQIVVTGGNDAKK  266 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCC-CSSCEEEECT--TSCEEEECSSSTTC
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCC-CccccccCCC--CCCEEEeCCCCCCc
Confidence            566777 888888887543           5889999877532  22222111 1234567777  8888888884 568


Q ss_pred             EEEEeCCCCCC
Q 021291           88 VKCWDIENGGL   98 (314)
Q Consensus        88 v~iwd~~~~~~   98 (314)
                      +.+||..+.+.
T Consensus       267 v~~yd~~t~~W  277 (656)
T 1k3i_A          267 TSLYDSSSDSW  277 (656)
T ss_dssp             EEEEEGGGTEE
T ss_pred             eEEecCcCCce
Confidence            99999987654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.99  E-value=0.0046  Score=51.06  Aligned_cols=197  Identities=14%  Similarity=0.009  Sum_probs=111.7

Q ss_pred             eeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEE-EeecCCeEEEEeCCCCCCC
Q 021291           21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCWDIENGGLS   99 (314)
Q Consensus        21 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~v~iwd~~~~~~~   99 (314)
                      -.|.+..+++ +|+.+. ...|+..++........+...   ..+..++|.+  ..+.|+ +-...+.|..+++......
T Consensus        79 ~~C~~~~~~~-~l~~~~-~~~I~~i~~~~~~~~~~~~~~---~~~~gl~~d~--~~~~ly~~D~~~~~I~r~~~~g~~~~  151 (386)
T 3v65_B           79 RSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNNL---ENAIALDFHH--RRELVFWSDVTLDRILRANLNGSNVE  151 (386)
T ss_dssp             SCEEECSSCC-EEEEEC-BSCEEEECTTSCCCEEEECSC---SCEEEEEEET--TTTEEEEEETTTTEEEEEETTSCCEE
T ss_pred             CeECCccccc-eeEeec-CccceeeccCCCcEEEEecCC---CccEEEEEec--CCCeEEEEeCCCCcEEEEecCCCCcE
Confidence            3444444433 444333 346888888766554444333   3478999997  545555 4445778988988765311


Q ss_pred             CCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEec
Q 021291          100 SNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDL  179 (314)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~  179 (314)
                           .+....                                     +.....+++.+.+..+++ +-...+.|.+.++
T Consensus       152 -----~~~~~~-------------------------------------~~~p~glavd~~~g~lY~-~d~~~~~I~~~~~  188 (386)
T 3v65_B          152 -----EVVSTG-------------------------------------LESPGGLAVDWVHDKLYW-TDSGTSRIEVANL  188 (386)
T ss_dssp             -----EEECSS-------------------------------------CSCCCCEEEETTTTEEEE-EETTTTEEEECBT
T ss_pred             -----EEEeCC-------------------------------------CCCccEEEEEeCCCeEEE-EcCCCCeEEEEeC
Confidence                 100000                                     000011567776666665 3444678999988


Q ss_pred             CCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecC-CcEEEEEccCCCCceEee-ecCCcceEE
Q 021291          180 NTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED-GSILVWDIRNPGIPLTAM-KVHLEPVLC  257 (314)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~d-g~i~vwd~~~~~~~~~~~-~~h~~~v~~  257 (314)
                      ........+..            .......++ +.|.+  +. ++++-..+ +.|..++++.  .....+ ...-...+.
T Consensus       189 dg~~~~~l~~~------------~l~~P~gia-vdp~~--g~-ly~td~~~~~~I~r~~~dG--~~~~~~~~~~~~~PnG  250 (386)
T 3v65_B          189 DGAHRKVLLWQ------------SLEKPRAIA-LHPME--GT-IYWTDWGNTPRIEASSMDG--SGRRIIADTHLFWPNG  250 (386)
T ss_dssp             TSCSCEEEECS------------SCSCEEEEE-EETTT--TE-EEEEECSSSCEEEEEETTS--CSCEEEECSSCSCEEE
T ss_pred             CCCceEEeecC------------CCCCCcEEE-EEcCC--Ce-EEEeccCCCCEEEEEeCCC--CCcEEEEECCCCCeee
Confidence            65433222221            112456666 88862  33 55555445 7888888874  333333 233345789


Q ss_pred             EEEeCCCC-eEEEecCCCcEEEEecCCCe
Q 021291          258 LSIDESCN-GGISGGADQKIVLYNLDHST  285 (314)
Q Consensus       258 ~~~~~~~~-~l~s~s~dg~i~iw~~~~~~  285 (314)
                      |++++++. +.++-+..+.|..++++...
T Consensus       251 lavd~~~~~lY~aD~~~~~I~~~d~dG~~  279 (386)
T 3v65_B          251 LTIDYAGRRMYWVDAKHHVIERANLDGSH  279 (386)
T ss_dssp             EEEEGGGTEEEEEETTTTEEEEECTTSCS
T ss_pred             EEEeCCCCEEEEEECCCCEEEEEeCCCCe
Confidence            99997554 44555667889999987543

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.90  E-value=0.00091  Score=60.47  Aligned_cols=159  Identities=8%  Similarity=0.004  Sum_probs=89.9

Q ss_pred             cEEEEEEc-ccCCCCeEEEeec-CC----eEEEEeCCCC-CCCCCCeeeeecceeeEEEeeeeeccccccccCCCCccee
Q 021291           64 GIVSVATG-PSIGLNKVISQGR-DG----TVKCWDIENG-GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCY  136 (314)
Q Consensus        64 ~v~~~~~~-~~~~~~~l~s~~~-dg----~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (314)
                      .+...+|+ |  ||++|+-+.. +|    +|+++|+.++ +.+..   .+     ... .  .                 
T Consensus       175 ~~~~~~~S~P--DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~---~~-----~~~-~--~-----------------  224 (751)
T 2xe4_A          175 DVMEVKPAPP--EHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD---KV-----SGT-N--G-----------------  224 (751)
T ss_dssp             EEEEEEECTT--TTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC---CE-----EEE-C--S-----------------
T ss_pred             EEeeeEecCC--CCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc---cc-----cCc-e--e-----------------
Confidence            47889999 9  9998874432 32    5999999988 53211   00     000 0  0                 


Q ss_pred             eccCCceeeecCCCCCCceeccCCCceEEEeecCc---CeEEEEecCCCcee--eeecccccCCCCCcCCCCCceeeeEE
Q 021291          137 EREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL---SEVEIWDLNTAERC--TRLHQNSCGGSPNFSSKGRGMCMAVQ  211 (314)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d---~~i~vwd~~~~~~~--~~~~~~~~~~~~~h~~~~~~~~~~~~  211 (314)
                                      .++|+|||+.++.+.-...   ..|+++++.++...  ..+..       .    .......+.
T Consensus       225 ----------------~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~-------~----~~~~~~~~~  277 (751)
T 2xe4_A          225 ----------------EIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEE-------H----NPLFSAFMY  277 (751)
T ss_dssp             ----------------CCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEEC-------C----CTTCEEEEE
T ss_pred             ----------------eEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEec-------C----CCceEEEEE
Confidence                            0569999988776543211   36888888776422  22221       0    122345666


Q ss_pred             EecCCCCCCceEEEEee--cCCcEEEEEccCCC-Cc--eEeeecCCcceEEEEEeCCCCeEEEecCC----CcEEEEecC
Q 021291          212 AYLPSKSQGFVNVLAGY--EDGSILVWDIRNPG-IP--LTAMKVHLEPVLCLSIDESCNGGISGGAD----QKIVLYNLD  282 (314)
Q Consensus       212 ~~~p~~~~g~~~l~~g~--~dg~i~vwd~~~~~-~~--~~~~~~h~~~v~~~~~~~~~~~l~s~s~d----g~i~iw~~~  282 (314)
                       |+||   |+.++++..  ....|+++|+.++. ..  ............++.|+..+.+++....+    ..|..+++.
T Consensus       278 -~SpD---g~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~  353 (751)
T 2xe4_A          278 -KAAD---TNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRG  353 (751)
T ss_dssp             -ECTT---SSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETT
T ss_pred             -ECCC---CCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCC
Confidence             9998   653333332  23468888988632 23  22233344566677765555555554443    356667766


Q ss_pred             C
Q 021291          283 H  283 (314)
Q Consensus       283 ~  283 (314)
                      +
T Consensus       354 ~  354 (751)
T 2xe4_A          354 Q  354 (751)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.87  E-value=0.0064  Score=48.71  Aligned_cols=205  Identities=8%  Similarity=-0.091  Sum_probs=117.6

Q ss_pred             ceeEEEEcc-CCCEEEEecCCCeEEEEeCCCCeEE-EEEeccCCcccEEEEEEcccCCCCe-EEEeecCCeEEEEeCCCC
Q 021291           20 SVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTV-SSSWVHSAAHGIVSVATGPSIGLNK-VISQGRDGTVKCWDIENG   96 (314)
Q Consensus        20 ~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~-l~s~~~dg~v~iwd~~~~   96 (314)
                      .+.+++|++ ++.++.+-...+.|..++...+... ..+...-  .....+++.+  .+.. +++-...+.|.++++...
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l--~~p~glavd~--~~g~ly~~d~~~~~I~~~~~dG~  111 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGL--LSPDGLACDW--LGEKLYWTDSETNRIEVSNLDGS  111 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECC--SCCCEEEEET--TTTEEEEEETTTTEEEEEETTSC
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCC--CCccEEEEEc--CCCeEEEEECCCCEEEEEECCCC
Confidence            466889998 4555666667889999998765321 1122111  2256788876  4444 445555778999998754


Q ss_pred             CCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEE
Q 021291           97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI  176 (314)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v  176 (314)
                      ...   .+..........                                       +++.|.+..++.+-....+.|..
T Consensus       112 ~~~---~l~~~~~~~P~g---------------------------------------iavdp~~g~ly~td~~~~~~I~r  149 (318)
T 3sov_A          112 LRK---VLFWQELDQPRA---------------------------------------IALDPSSGFMYWTDWGEVPKIER  149 (318)
T ss_dssp             SCE---EEECSSCSSEEE---------------------------------------EEEEGGGTEEEEEECSSSCEEEE
T ss_pred             cEE---EEEeCCCCCccE---------------------------------------EEEeCCCCEEEEEecCCCCEEEE
Confidence            211   110000000000                                       55677666666543223577888


Q ss_pred             EecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceE
Q 021291          177 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVL  256 (314)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~  256 (314)
                      .++.... ...+..       .    .-.....++ ++|++  ++ +.++-...+.|..+|++. ........+......
T Consensus       150 ~~~dG~~-~~~~~~-------~----~l~~Pngla-vd~~~--~~-lY~aD~~~~~I~~~d~dG-~~~~~~~~~~~~~P~  212 (318)
T 3sov_A          150 AGMDGSS-RFIIIN-------S----EIYWPNGLT-LDYEE--QK-LYWADAKLNFIHKSNLDG-TNRQAVVKGSLPHPF  212 (318)
T ss_dssp             EETTSCS-CEEEEC-------S----SCSCEEEEE-EETTT--TE-EEEEETTTTEEEEEETTS-CSCEEEECSCCSCEE
T ss_pred             EEcCCCC-eEEEEE-------C----CCCCccEEE-EeccC--CE-EEEEECCCCEEEEEcCCC-CceEEEecCCCCCce
Confidence            8876332 222220       0    112456676 99862  33 566666778999999873 222222232344567


Q ss_pred             EEEEeCCCCeEEEecCCCcEEEEecCCCeeeE
Q 021291          257 CLSIDESCNGGISGGADQKIVLYNLDHSTYVL  288 (314)
Q Consensus       257 ~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~  288 (314)
                      .++++.+ ..+++-...+.|..++..+++...
T Consensus       213 glav~~~-~lywtd~~~~~V~~~~~~~G~~~~  243 (318)
T 3sov_A          213 ALTLFED-ILYWTDWSTHSILACNKYTGEGLR  243 (318)
T ss_dssp             EEEEETT-EEEEEETTTTEEEEEETTTCCSCE
T ss_pred             EEEEeCC-EEEEEecCCCeEEEEECCCCCceE
Confidence            8888755 455666677899999987776543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.86  E-value=0.0095  Score=50.53  Aligned_cols=206  Identities=9%  Similarity=-0.010  Sum_probs=113.6

Q ss_pred             ceeEEEEcc-C-CCEEEEecCCCeEEEEeCCCCeEEEEEeccC-CcccEEEEEE-------cccCCCCeEEEeecCC---
Q 021291           20 SVTDVCFHQ-T-KPILFAGTTGGELRIWDTVQHRTVSSSWVHS-AAHGIVSVAT-------GPSIGLNKVISQGRDG---   86 (314)
Q Consensus        20 ~v~~~~~~~-~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~v~~~~~-------~~~~~~~~l~s~~~dg---   86 (314)
                      ....|+|+| + ++++++-...+.|++.|++++.....+.... .......|+|       ++  +++.|+.+...+   
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~--~G~~lyvad~~~~~~  217 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD--EAEYMIVAIDYDGKG  217 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC--TTCEEEEEECCCTTG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC--CCCEEEEEeCCCCCc
Confidence            356899998 3 4444444445679999988766654443321 1234789999       99  888677666543   


Q ss_pred             ----eEEEEeCCC-CCCCCCCe-eeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCC
Q 021291           87 ----TVKCWDIEN-GGLSSNPS-LTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEG  160 (314)
Q Consensus        87 ----~v~iwd~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (314)
                          .|.+.+... +.....+. ..+.       .                                +..-..++++|++
T Consensus       218 ~~~~~V~~i~r~~~G~~~~~~~~~~v~-------~--------------------------------~~~p~giavdp~~  258 (496)
T 3kya_A          218 DESPSVYIIKRNADGTFDDRSDIQLIA-------A--------------------------------YKQCNGATIHPIN  258 (496)
T ss_dssp             GGEEEEEEEECCTTSCCSTTSCEEEEE-------E--------------------------------ESCCCCEEECTTT
T ss_pred             ccCceEEEEecCCCCceeecccceeec-------c--------------------------------CCCceEEEEcCCC
Confidence                255555333 22110000 0000       0                                0000116688877


Q ss_pred             CceEEEeecCcCeEEEEecC-------CCce-----------eeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCce
Q 021291          161 PKYMAVAGEQLSEVEIWDLN-------TAER-----------CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFV  222 (314)
Q Consensus       161 ~~~~~~~g~~d~~i~vwd~~-------~~~~-----------~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~  222 (314)
                      ..+++ +-..++.|..+|+.       ++..           ...+..        .  ........++ |+|+   |..
T Consensus       259 g~LYv-td~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~--------~--~~~~~p~~ia-~~p~---G~~  323 (496)
T 3kya_A          259 GELYF-NSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFT--------I--ADPSWEFQIF-IHPT---GKY  323 (496)
T ss_dssp             CCEEE-EETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEE--------C--SSSSCCEEEE-ECTT---SSE
T ss_pred             CeEEE-EECCCCEEEEEecccccccccCceeecccccccccccceeEe--------c--CCCCCceEEE-EcCC---CCE
Confidence            77766 45557889999987       4543           111110        0  0123456676 9998   553


Q ss_pred             EEEEeecCCcEEEEEccCCCCce---EeeecC------C---------cceE-EEEEe-------CCCCeEEEecCCCcE
Q 021291          223 NVLAGYEDGSILVWDIRNPGIPL---TAMKVH------L---------EPVL-CLSID-------ESCNGGISGGADQKI  276 (314)
Q Consensus       223 ~l~~g~~dg~i~vwd~~~~~~~~---~~~~~h------~---------~~v~-~~~~~-------~~~~~l~s~s~dg~i  276 (314)
                      ++++-...+.|+.++.......+   ..+-+.      .         .... .+..+       .++.++++=...+.|
T Consensus       324 lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rI  403 (496)
T 3kya_A          324 AYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCV  403 (496)
T ss_dssp             EEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEE
T ss_pred             EEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEE
Confidence            45555677889997765311111   222221      0         1234 45555       567777777778889


Q ss_pred             EEEec
Q 021291          277 VLYNL  281 (314)
Q Consensus       277 ~iw~~  281 (314)
                      +.++.
T Consensus       404 r~i~~  408 (496)
T 3kya_A          404 RKVTP  408 (496)
T ss_dssp             EEECT
T ss_pred             EEEeC
Confidence            99983

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.86  E-value=0.016  Score=52.81  Aligned_cols=240  Identities=9%  Similarity=0.038  Sum_probs=123.3

Q ss_pred             eeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEe-ccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCC
Q 021291           21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW-VHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLS   99 (314)
Q Consensus        21 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~   99 (314)
                      |.++...+++++.+ ++.++-|..|+..+++...... ...  ..|.++...+  ++. |..++.++-|.+||..+++..
T Consensus       175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~--~~i~~i~~d~--~g~-lwigt~~~Gl~~~~~~~~~~~  248 (795)
T 4a2l_A          175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGT--KQIQAILQQS--PTR-IWVATEGAGLFLINPKTKEIK  248 (795)
T ss_dssp             CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----C--CCEEEEEEEE--TTE-EEEEEBSSCEEEEETTTTEEE
T ss_pred             eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCC--CeeEEEEEcC--CCC-EEEEECCCCeEEEeCCCCeEE
Confidence            88888888886555 5655458899987765443211 122  4488888877  655 445554445889998775431


Q ss_pred             CCCeeeeec------ceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCC-------CCC---ceeccCCCce
Q 021291          100 SNPSLTIKT------NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLC-------DSK---DDVPAEGPKY  163 (314)
Q Consensus       100 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~---~~~~~~~~~~  163 (314)
                      .   +....      .......+........-..... ....++.............       ...   +...++|. +
T Consensus       249 ~---~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-l  323 (795)
T 4a2l_A          249 N---YLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-M  323 (795)
T ss_dssp             E---ECCCTTCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-E
T ss_pred             E---eecCCCCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-E
Confidence            1   10000      0011111111111111111111 2233333333222111110       111   44455554 3


Q ss_pred             EEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCC
Q 021291          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI  243 (314)
Q Consensus       164 ~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~  243 (314)
                      .+  |+.++-|..|+..+... ..+....     ....-....+.++. ..++   |.  |..|+.++-|..||..+ +.
T Consensus       324 Wi--gt~~~Gl~~~~~~~~~~-~~~~~~~-----~~~~l~~~~V~~i~-~d~~---g~--lWiGt~~~Gl~~~~~~~-~~  388 (795)
T 4a2l_A          324 WL--GTYFGGLNYYHPIRNRF-KNIRNIP-----YKNSLSDNVVSCIV-EDKD---KN--LWIGTNDGGLNLYNPIT-QR  388 (795)
T ss_dssp             EE--EESSSCEEEECGGGGSS-EEECCCT-----TSSSCSCSSEEEEE-ECTT---SC--EEEEESSSCEEEECTTT-CC
T ss_pred             EE--EECCCCeEEeCCCcccc-eEEcCCC-----CCCCCCCCeeEEEE-ECCC---CC--EEEEECCCCeEEEcCCC-Cc
Confidence            32  44456799998765542 2222100     00011123466665 5554   54  66788887899999875 33


Q ss_pred             ceEeee--------cCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCee
Q 021291          244 PLTAMK--------VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTY  286 (314)
Q Consensus       244 ~~~~~~--------~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~  286 (314)
                      ......        .....|.++..++++..|..|+.++-|.+||..+++.
T Consensus       389 ~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~  439 (795)
T 4a2l_A          389 FTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV  439 (795)
T ss_dssp             EEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE
T ss_pred             EEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE
Confidence            222111        1235799999999987456667767799999887654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.82  E-value=0.00078  Score=60.23  Aligned_cols=227  Identities=10%  Similarity=-0.063  Sum_probs=113.3

Q ss_pred             CCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEee-cCCeEEEEeCCC----CCCCCCCeeeeecceeeE
Q 021291           39 GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG-RDGTVKCWDIEN----GGLSSNPSLTIKTNSYHF  113 (314)
Q Consensus        39 dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~v~iwd~~~----~~~~~~~~~~~~~~~~~~  113 (314)
                      .+.|++.++.+.+....+...   ..+..|+|.+  ....|+.+. ..+.|+.+++..    .....  ++.........
T Consensus       385 ~~~I~~id~~~~~~~~~~~~~---~~p~gla~d~--~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~--~i~~~~~~P~g  457 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPNL---RNVVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHGVSSYDT--VISRDIQAPDG  457 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCCC---TTCCCCEEET--TTTEEEECCTTTTSBEEEESCCCCC-CCCCC--BCCSCC--CCC
T ss_pred             ccceEEEeCCCCcceeeeccC---cceEEEcccc--ccCeEEEEecCCCeEEEEecCCCCCCcceEE--EEeCCCCCcce
Confidence            357888888776554433332   3367899988  656666554 467899999875    11111  11100001111


Q ss_pred             EEeeeeeccccccccCCCCcceeeccCCceeeec---CCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceeeeecc
Q 021291          114 CKLSLVKEPYANAKQANEPKDCYEREVGETVDTD---SLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQ  190 (314)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~  190 (314)
                      ..+..........-.....+.++++.........   +.....+++.|.+..++++-....+.|..+++.... ...+..
T Consensus       458 lavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l~~  536 (699)
T 1n7d_A          458 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVT  536 (699)
T ss_dssp             EECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEESC
T ss_pred             EEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEEEe
Confidence            1111111111111111122223333222211111   111122889987777765332223678888775332 222210


Q ss_pred             cccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeee--cCCcceEEEEEeCCCCeEE
Q 021291          191 NSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK--VHLEPVLCLSIDESCNGGI  268 (314)
Q Consensus       191 ~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~  268 (314)
                             .    .-.....++ ++|++  ++ ++++-...+.|.++|+.. ......+.  ........|+++.+ .+++
T Consensus       537 -------~----~l~~PnGla-vd~~~--~~-LY~aD~~~~~I~~~d~dG-~~~~~~~~~~~~~~~P~glavd~~-~lyw  599 (699)
T 1n7d_A          537 -------E----NIQWPNGIT-LDLLS--GR-LYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVFED-KVFW  599 (699)
T ss_dssp             -------S----SCSSCCCEE-ECTTT--CC-EEEEETTTTEEEEECSSS-SCCEEECCCSSSCSSCCCCEEETT-EEEE
T ss_pred             -------C----CCCCccEEE-EeccC--CE-EEEEecCCCeEEEEccCC-CceEEEEecCCcCCCceEeEEECC-EEEE
Confidence                   0    012344565 88872  33 666666778899999874 22222222  11223456677766 4556


Q ss_pred             EecCCCcEEEEecCCCeeeEee
Q 021291          269 SGGADQKIVLYNLDHSTYVLFG  290 (314)
Q Consensus       269 s~s~dg~i~iw~~~~~~~~~~~  290 (314)
                      +....+.|..++..+++.+..+
T Consensus       600 td~~~~~V~~~d~~~G~~~~~i  621 (699)
T 1n7d_A          600 TDIINEAIFSANRLTGSDVNLL  621 (699)
T ss_dssp             ECSTTTCEEEEETTTEEEEECC
T ss_pred             EeCCCCeEEEEEccCCCceEEe
Confidence            6667789999998887766543

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.82  E-value=0.011  Score=49.65  Aligned_cols=199  Identities=10%  Similarity=0.014  Sum_probs=111.2

Q ss_pred             ceeEEEEccC--CCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC----e-EEEEe
Q 021291           20 SVTDVCFHQT--KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG----T-VKCWD   92 (314)
Q Consensus        20 ~v~~~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg----~-v~iwd   92 (314)
                      ....++|+|+  +..|+.+...+.|+.+|..+++...... ..  .....+++++  +++ |+.+...+    . +...+
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~--~~P~giavd~--dG~-lyVad~~~~~~~~gv~~~~  213 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NI--GQCADVNFTL--NGD-MVVVDDQSSDTNTGIYLFT  213 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CC--SCEEEEEECT--TCC-EEEEECCSCTTSEEEEEEC
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CC--CCccEEEECC--CCC-EEEEcCCCCcccceEEEEE
Confidence            4568999984  3345444444889999987776654433 22  3478999999  888 44444322    1 22222


Q ss_pred             CCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcC
Q 021291           93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS  172 (314)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~  172 (314)
                      .. +....  .       ..   +                             ..+.....++++|++..+++ +-..++
T Consensus       214 ~~-~~~~~--~-------~~---~-----------------------------~~~~~P~giavd~~~G~lyv-~d~~~~  250 (433)
T 4hw6_A          214 RA-SGFTE--R-------LS---L-----------------------------CNARGAKTCAVHPQNGKIYY-TRYHHA  250 (433)
T ss_dssp             GG-GTTCC--E-------EE---E-----------------------------EECSSBCCCEECTTTCCEEE-CBTTCS
T ss_pred             CC-CCeec--c-------cc---c-----------------------------cccCCCCEEEEeCCCCeEEE-EECCCC
Confidence            11 11000  0       00   0                             00111111678884445554 444568


Q ss_pred             eEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCC-CCc--eEeee
Q 021291          173 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP-GIP--LTAMK  249 (314)
Q Consensus       173 ~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~-~~~--~~~~~  249 (314)
                      .|+.+|..++.....+...      +.    ......++ |+|+   |+.++++-...+.|+.++.... +..  ...+.
T Consensus       251 ~V~~~d~~~g~~~~~~~~~------~~----~~~~~~ia-~dpd---G~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~a  316 (433)
T 4hw6_A          251 MISSYDPATGTLTEEEVMM------DT----KGSNFHIV-WHPT---GDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVC  316 (433)
T ss_dssp             EEEEECTTTCCEEEEEEEC------SC----CSSCEEEE-ECTT---SSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEE
T ss_pred             EEEEEECCCCeEEEEEecc------CC----CCCcccEE-EeCC---CCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEE
Confidence            8999999877653333210      11    11223466 9998   5435556666788999887521 211  11222


Q ss_pred             cC---------------CcceEEEEE---------eCCCCeEEEecCCCcEEEEec
Q 021291          250 VH---------------LEPVLCLSI---------DESCNGGISGGADQKIVLYNL  281 (314)
Q Consensus       250 ~h---------------~~~v~~~~~---------~~~~~~l~s~s~dg~i~iw~~  281 (314)
                      +.               -.....+++         +.++.++++-...+.|+.++.
T Consensus       317 g~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~  372 (433)
T 4hw6_A          317 GQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP  372 (433)
T ss_dssp             ECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred             ecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence            21               123567999         788887777777888999885

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.81  E-value=0.0097  Score=49.91  Aligned_cols=217  Identities=11%  Similarity=0.040  Sum_probs=109.2

Q ss_pred             eEEecCCCCceeEEEEccCCCEEEEecC-CC----eEEEEeCCCCeEE--EEEeccCCcccEEEEEEcccCCCCeEE-Ee
Q 021291           11 VAVLRGHRASVTDVCFHQTKPILFAGTT-GG----ELRIWDTVQHRTV--SSSWVHSAAHGIVSVATGPSIGLNKVI-SQ   82 (314)
Q Consensus        11 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~-dg----~v~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~   82 (314)
                      +..+.........++|+++|++|+.+.. ++    .+.+.+.. +...  ..+...   .....+++.|  +...|+ +-
T Consensus       171 v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~~~~~~~l~~~---~~p~giavdp--~~g~lyv~d  244 (430)
T 3tc9_A          171 VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SGFKVITELTKG---QNCNGAETHP--INGELYFNS  244 (430)
T ss_dssp             EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GTSCSEEEEEEC---SSCCCEEECT--TTCCEEEEE
T ss_pred             EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-CceeeeeeeccC---CCceEEEEeC--CCCEEEEEE
Confidence            4444444556788999999985555443 22    34444432 2211  223222   2256788888  444444 44


Q ss_pred             ecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCc
Q 021291           83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPK  162 (314)
Q Consensus        83 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (314)
                      ..++.|..++..++....  ...........                                       .++|+|+|+.
T Consensus       245 ~~~~~V~~~~~~~~~~~~--~~~~~~~~~P~---------------------------------------gia~~pdG~~  283 (430)
T 3tc9_A          245 WNAGQVFRYDFTTQETTP--LFTIQDSGWEF---------------------------------------HIQFHPSGNY  283 (430)
T ss_dssp             TTTTEEEEEETTTTEEEE--EEECSSSSCCE---------------------------------------EEEECTTSSE
T ss_pred             CCCCEEEEEECCCCcEEE--EEEcCCCCcce---------------------------------------eEEEcCCCCE
Confidence            457889999987653210  00000000000                                       0679999986


Q ss_pred             eEEEeecCcCeEEEEecCC--Cce--eeeecccccCCCCCcCCC-----CCceee-eEEEecCC-----CCCCceEEEEe
Q 021291          163 YMAVAGEQLSEVEIWDLNT--AER--CTRLHQNSCGGSPNFSSK-----GRGMCM-AVQAYLPS-----KSQGFVNVLAG  227 (314)
Q Consensus       163 ~~~~~g~~d~~i~vwd~~~--~~~--~~~~~~~~~~~~~~h~~~-----~~~~~~-~~~~~~p~-----~~~g~~~l~~g  227 (314)
                      +++ +-...+.|..++...  ++.  +..+....  ...+..+.     .-.... .+. ..++     +.+|. ++++-
T Consensus       284 lyv-~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~--g~~g~~dg~~~~a~~~~P~~gv~-v~~~~y~~~D~~g~-lyvaD  358 (430)
T 3tc9_A          284 AYI-VVVNQHYILRSDYDWKTKRLTTPYIVCGQQ--GAKDWVDGVGKKARMHAPRQGTF-VKNPAYKGSSDEYD-FYFCD  358 (430)
T ss_dssp             EEE-EETTTTEEEEEEEETTTTEECCCEEEEECT--TCBCCBCEEGGGCBBSSEEEEEE-EECGGGTTSSCCEE-EEEEE
T ss_pred             EEE-EECCCCEEEEEeCCcccccccceEEEeccC--CCCCCCCCCCcceEeCCCcceEE-EccccccccCCCCe-EEEEE
Confidence            665 444568899987653  221  12222100  00011000     000111 222 2211     12244 55555


Q ss_pred             ecCCcEEEEEccCCCCceEeeecC------------------CcceEEEEEeC-CCCeEEEecCCCcEEEEecC
Q 021291          228 YEDGSILVWDIRNPGIPLTAMKVH------------------LEPVLCLSIDE-SCNGGISGGADQKIVLYNLD  282 (314)
Q Consensus       228 ~~dg~i~vwd~~~~~~~~~~~~~h------------------~~~v~~~~~~~-~~~~l~s~s~dg~i~iw~~~  282 (314)
                      ..++.|+.++..  +. +..+.+.                  -.....|++++ ++.++++-...+.|+.++++
T Consensus       359 ~~n~~I~~i~~~--G~-v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          359 RENHCIRILTPQ--GR-VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             GGGTEEEEECTT--SE-EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             CCCcEEEEECCC--Cc-EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence            567788888733  43 2222221                  11468899998 56666666667788887765

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.79  E-value=0.011  Score=49.71  Aligned_cols=219  Identities=12%  Similarity=0.075  Sum_probs=110.1

Q ss_pred             eEEecCCCCceeEEEEccCCCEEEEecCC---Ce-EEEEeCCCCeE-EEEEeccCCcccEEEEEEcccCCCCeEE-Eeec
Q 021291           11 VAVLRGHRASVTDVCFHQTKPILFAGTTG---GE-LRIWDTVQHRT-VSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGR   84 (314)
Q Consensus        11 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~d---g~-v~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~   84 (314)
                      +..+.+.......++|+++|+++++....   .. +...+...+.. ...+...   .....+++.|  +...|+ +-..
T Consensus       174 v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~---~~P~giavd~--~~G~lyv~d~~  248 (433)
T 4hw6_A          174 VDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLCNA---RGAKTCAVHP--QNGKIYYTRYH  248 (433)
T ss_dssp             EEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEEEC---SSBCCCEECT--TTCCEEECBTT
T ss_pred             EEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeecccccccc---CCCCEEEEeC--CCCeEEEEECC
Confidence            34444444567899999999855554321   11 33333222111 1112111   2246778887  444455 4445


Q ss_pred             CCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceE
Q 021291           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM  164 (314)
Q Consensus        85 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (314)
                      ++.|+.+|..++..... ...........                                       .++|+|+++.++
T Consensus       249 ~~~V~~~d~~~g~~~~~-~~~~~~~~~~~---------------------------------------~ia~dpdG~~LY  288 (433)
T 4hw6_A          249 HAMISSYDPATGTLTEE-EVMMDTKGSNF---------------------------------------HIVWHPTGDWAY  288 (433)
T ss_dssp             CSEEEEECTTTCCEEEE-EEECSCCSSCE---------------------------------------EEEECTTSSEEE
T ss_pred             CCEEEEEECCCCeEEEE-EeccCCCCCcc---------------------------------------cEEEeCCCCEEE
Confidence            67899999876643110 00000000000                                       067999998666


Q ss_pred             EEeecCcCeEEEEecC--CCce--eeeecccccCCCCCcCC-----CCCceeeeEEEecC------CCCCCceEEEEeec
Q 021291          165 AVAGEQLSEVEIWDLN--TAER--CTRLHQNSCGGSPNFSS-----KGRGMCMAVQAYLP------SKSQGFVNVLAGYE  229 (314)
Q Consensus       165 ~~~g~~d~~i~vwd~~--~~~~--~~~~~~~~~~~~~~h~~-----~~~~~~~~~~~~~p------~~~~g~~~l~~g~~  229 (314)
                      + +-...+.|+.++..  ++..  ...+....  ...+...     ..-.....++ +.+      +..+|. ++++-..
T Consensus       289 v-ad~~~~~I~~~~~d~~~~~~~~~~~~ag~~--g~~g~~dg~~~~a~~~~P~gia-v~~n~~y~~dd~~g~-lyvaD~~  363 (433)
T 4hw6_A          289 I-IYNGKHCIYRVDYNRETGKLAVPYIVCGQH--SSPGWVDGMGTGARLWGPNQGI-FVKNEAYAGEEDEYD-FYFCDRD  363 (433)
T ss_dssp             E-EETTTTEEEEEEBCTTTCCBCCCEEEEECT--TCCCCBCEEGGGSBCSSEEEEE-EEECGGGTTSSCCEE-EEEEETT
T ss_pred             E-EeCCCCEEEEEeCCCCCcccCcEEEEEecC--CCCccCCCcccceEEcCCccEE-EEccccccccCCCCc-EEEEECC
Confidence            5 44456889998765  2321  11222100  0001100     0011234454 611      112254 5666666


Q ss_pred             CCcEEEEEccCCCCceEeeecC------------------CcceEEEEEe-CCCCeEEEecCCCcEEEEecC
Q 021291          230 DGSILVWDIRNPGIPLTAMKVH------------------LEPVLCLSID-ESCNGGISGGADQKIVLYNLD  282 (314)
Q Consensus       230 dg~i~vwd~~~~~~~~~~~~~h------------------~~~v~~~~~~-~~~~~l~s~s~dg~i~iw~~~  282 (314)
                      ++.|+.++..  +. +..+.+.                  -.....|+++ +++.++++=...+.|+.++++
T Consensus       364 n~~I~~~~~~--G~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          364 SHTVRVLTPE--GR-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             TTEEEEECTT--SE-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             CCEEEEECCC--CC-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            7888888853  43 3333221                  1236788998 777777776677788887765

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.77  E-value=0.012  Score=48.83  Aligned_cols=209  Identities=11%  Similarity=-0.060  Sum_probs=117.6

Q ss_pred             CCCceeEEEEccC-CCEEEEecCCCeEEEEeCCCC----eEEEEEeccCCcccEEEEEEcccCCCCeEE-EeecCCeEEE
Q 021291           17 HRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQH----RTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKC   90 (314)
Q Consensus        17 h~~~v~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~v~i   90 (314)
                      ....+..++|++. +.++.+-...+.|+.+++...    .....+....  .....|++.+  .+..|+ +-...+.|.+
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~--~~p~glavD~--~~~~lY~~d~~~~~I~~  185 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI--QAPDGLAVDW--IHSNIYWTDSVLGTVSV  185 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSC--SCEEEEEEET--TTTEEEEEETTTTEEEE
T ss_pred             ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCC--CCcccEEEEe--cCCceEEEECCCCeEEE
Confidence            3456789999985 445555566788999988652    2222222222  3367888886  444444 5455778988


Q ss_pred             EeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecC
Q 021291           91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ  170 (314)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  170 (314)
                      .+++......  +.. ......      .                                 .+++.|.+..++.+-...
T Consensus       186 ~~~~g~~~~~--l~~-~~~~~P------~---------------------------------~iavdp~~g~ly~td~~~  223 (400)
T 3p5b_L          186 ADTKGVKRKT--LFR-ENGSKP------R---------------------------------AIVVDPVHGFMYWTDWGT  223 (400)
T ss_dssp             ECTTTCSEEE--EEE-CSSCCE------E---------------------------------EEEEETTTTEEEEEECSS
T ss_pred             EeCCCCceEE--EEe-CCCCCc------c---------------------------------eEEEecccCeEEEEeCCC
Confidence            8887543211  100 000000      0                                 056777766666543233


Q ss_pred             cCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeec
Q 021291          171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV  250 (314)
Q Consensus       171 d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~  250 (314)
                      .+.|...++........+..            .-.....++ ++|++  ++ +.++-...+.|..+|++. .........
T Consensus       224 ~~~I~~~~~dG~~~~~~~~~------------~l~~P~gla-vd~~~--~~-lY~aD~~~~~I~~~d~dG-~~~~~~~~~  286 (400)
T 3p5b_L          224 PAKIKKGGLNGVDIYSLVTE------------NIQWPNGIT-LDLLS--GR-LYWVDSKLHSISSIDVNG-GNRKTILED  286 (400)
T ss_dssp             SCCEEEEETTSCSCEEEECS------------SCSCEEEEE-EETTT--TE-EEEEETTTTEEEEEETTS-CCCEEEEEC
T ss_pred             CCEEEEEeCCCCccEEEEEC------------CCCceEEEE-EEeCC--CE-EEEEECCCCEEEEEeCCC-CccEEEEeC
Confidence            46788888764333222220            112456676 88862  33 555656678899999874 322222222


Q ss_pred             --CCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291          251 --HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF  289 (314)
Q Consensus       251 --h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~  289 (314)
                        .-.....|++..+ .++++-...+.|..++..+++.+..
T Consensus       287 ~~~l~~P~gl~v~~~-~lywtd~~~~~V~~~~~~~G~~~~~  326 (400)
T 3p5b_L          287 EKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNL  326 (400)
T ss_dssp             SSTTSSEEEEEEETT-EEEEEESSSCSEEEEESSSCCCCEE
T ss_pred             CCCCCCCEEEEEeCC-EEEEecCCCCeEEEEEcCCCCceEE
Confidence              2234567777544 4556667778899999777765443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.74  E-value=0.011  Score=47.38  Aligned_cols=207  Identities=10%  Similarity=-0.109  Sum_probs=117.2

Q ss_pred             CCceeEEEEccCC-CEEEEecCCCeEEEEeCCC---CeEEEE-EeccCCcccEEEEEEcccCCCCeE-EEeecCCeEEEE
Q 021291           18 RASVTDVCFHQTK-PILFAGTTGGELRIWDTVQ---HRTVSS-SWVHSAAHGIVSVATGPSIGLNKV-ISQGRDGTVKCW   91 (314)
Q Consensus        18 ~~~v~~~~~~~~~-~~l~s~~~dg~v~iwd~~~---~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~v~iw   91 (314)
                      ...+..++|++++ .++++-..++.|..++...   +..... +....  .....+++.+  .+..| ++-...+.|.+.
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~--~~p~glavd~--~~~~ly~~d~~~~~I~~~  104 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI--QAPDGLAVDW--IHSNIYWTDSVLGTVSVA  104 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC--SCCCEEEEET--TTTEEEEEETTTTEEEEE
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCC--CCcCEEEEee--cCCeEEEEECCCCEEEEE
Confidence            4456789999855 4555666678999999875   122222 22111  2357888876  44444 454567889999


Q ss_pred             eCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCc
Q 021291           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL  171 (314)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d  171 (314)
                      |+.......  +... .....      .                                 .+++.|.+..++.+.....
T Consensus       105 ~~~g~~~~~--~~~~-~~~~P------~---------------------------------~iavdp~~g~ly~~d~~~~  142 (316)
T 1ijq_A          105 DTKGVKRKT--LFRE-NGSKP------R---------------------------------AIVVDPVHGFMYWTDWGTP  142 (316)
T ss_dssp             ETTSSSEEE--EEEC-TTCCE------E---------------------------------EEEEETTTTEEEEEECSSS
T ss_pred             eCCCCceEE--EEEC-CCCCc------c---------------------------------eEEeCCCCCEEEEEccCCC
Confidence            887532110  0000 00000      0                                 0567777766665432222


Q ss_pred             CeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEee-ec
Q 021291          172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM-KV  250 (314)
Q Consensus       172 ~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~-~~  250 (314)
                      +.|..+++.. .....+..       .    .-.....++ ++|+   +..++++-...+.|..+|++.  .....+ ..
T Consensus       143 ~~I~~~~~dG-~~~~~~~~-------~----~~~~P~gla-~d~~---~~~lY~~D~~~~~I~~~d~dg--~~~~~~~~~  204 (316)
T 1ijq_A          143 AKIKKGGLNG-VDIYSLVT-------E----NIQWPNGIT-LDLL---SGRLYWVDSKLHSISSIDVNG--GNRKTILED  204 (316)
T ss_dssp             CEEEEEETTS-CCEEEEEC-------S----SCSCEEEEE-EETT---TTEEEEEETTTTEEEEEETTS--CSCEEEEEC
T ss_pred             CeEEEEcCCC-CCeEEEEE-------C----CCCCceEEE-Eecc---CCEEEEEECCCCeEEEEecCC--CceEEEeec
Confidence            6788888753 33333321       0    122456676 8887   332556666778999999873  323333 21


Q ss_pred             --CCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291          251 --HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF  289 (314)
Q Consensus       251 --h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~  289 (314)
                        .......|+++. +..+++-...+.|..++..+++.+..
T Consensus       205 ~~~~~~P~giav~~-~~ly~~d~~~~~V~~~~~~~g~~~~~  244 (316)
T 1ijq_A          205 EKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNL  244 (316)
T ss_dssp             TTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCEE
T ss_pred             CCccCCcEEEEEEC-CEEEEEECCCCeEEEEeCCCCcceEE
Confidence              223467888864 55667777788999999877765443

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.65  E-value=0.032  Score=50.48  Aligned_cols=210  Identities=11%  Similarity=-0.067  Sum_probs=117.7

Q ss_pred             CCCceeEEEEcc-CCCEEEEecCCCeEEEEeCCCC----eEEEEEeccCCcccEEEEEEcccCCCCeEE-EeecCCeEEE
Q 021291           17 HRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQH----RTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKC   90 (314)
Q Consensus        17 h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~v~i   90 (314)
                      ....+..|+|++ ++.++++-...+.|+.+++...    .....+....  .....|++.+  .++.|+ +-...+.|.+
T Consensus       422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l--~~P~GLAvD~--~~~~LY~tD~~~~~I~v  497 (791)
T 3m0c_C          422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI--QAPDGLAVDW--IHSNIYWTDSVLGTVSV  497 (791)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC--SCCCEEEEET--TTTEEEEEETTTTEEEE
T ss_pred             CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCC--CCcceeeeee--cCCcEEEEecCCCeEEE
Confidence            345677899998 4555566666788999988752    2222232222  2366888887  554444 5556788999


Q ss_pred             EeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecC
Q 021291           91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ  170 (314)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  170 (314)
                      .++.......  +.. ......      ..                                 +++.|.+..++.+-.+.
T Consensus       498 ~~ldG~~~~~--l~~-~~l~~P------~g---------------------------------IaVDp~~g~LYwtD~g~  535 (791)
T 3m0c_C          498 ADTKGVKRKT--LFR-ENGSKP------RA---------------------------------IVVDPVHGFMYWTDWGT  535 (791)
T ss_dssp             EETTSSSEEE--EEE-CTTCCE------EE---------------------------------EEEETTTTEEEEEECSS
T ss_pred             EeCCCCeEEE--EEe-CCCCCc------ce---------------------------------EEEecCCCCEEEecCCC
Confidence            9987543110  100 000000      00                                 56777766666643332


Q ss_pred             cCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeec
Q 021291          171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV  250 (314)
Q Consensus       171 d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~  250 (314)
                      .+.|...++........+.        .    .-.....|+ ++|..  ++ ++++-...+.|..+++.. ......+..
T Consensus       536 ~~~I~~~~~dG~~~~~lv~--------~----~l~~P~GLa-vD~~~--~~-LYwaD~~~~~I~~~d~dG-~~~~~v~~~  598 (791)
T 3m0c_C          536 PAKIKKGGLNGVDIYSLVT--------E----NIQWPNGIT-LDLLS--GR-LYWVDSKLHSISSIDVNG-GNRKTILED  598 (791)
T ss_dssp             SCEEEEEETTSCCEEEEEC--------S----SCSCEEEEE-EETTT--TE-EEEEETTTTEEEEEETTS-CSCEEEEEC
T ss_pred             CCeEEEEecCCCceEEEEe--------C----CCCCceEEE-EecCC--Ce-EEEEeCCCCcEEEEecCC-CceEEEecC
Confidence            3678888886443322222        1    112456666 88762  33 555556667899999874 333333332


Q ss_pred             C--CcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEee
Q 021291          251 H--LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFG  290 (314)
Q Consensus       251 h--~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~  290 (314)
                      .  -....+|++..+ .++++-...+.|...+..+++.+..+
T Consensus       599 ~~~l~~P~glav~~~-~lYwtD~~~~~I~~~dk~tG~~~~~l  639 (791)
T 3m0c_C          599 EKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLL  639 (791)
T ss_dssp             TTTTSSEEEEEEETT-EEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             CCccCCCCEEEEeCC-EEEEEECCCCEEEEEeCCCCcceEEe
Confidence            1  224457777554 45566667788888887777655443

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.64  E-value=0.017  Score=46.95  Aligned_cols=215  Identities=8%  Similarity=-0.032  Sum_probs=109.3

Q ss_pred             CceeEEEEccC-CCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeE-EEeecCCeEEEEeCCCC
Q 021291           19 ASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKV-ISQGRDGTVKCWDIENG   96 (314)
Q Consensus        19 ~~v~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~v~iwd~~~~   96 (314)
                      ..+..++|++. +.++++-...+.|..++.........+....  .....+++.+  .+..| ++-...+.|.+.++...
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~--~~p~glavd~--~~g~ly~~d~~~~~I~~~~~dG~  148 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL--ESPGGLAVDW--VHDKLYWTDSGTSRIEVANLDGA  148 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC--SCCCEEEEET--TTTEEEEEETTTTEEEEEETTSC
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCC--CCccEEEEec--CCCeEEEEcCCCCeEEEEcCCCC
Confidence            34678999974 4455555677889999987654333332222  2256888886  44444 45555788999998754


Q ss_pred             CCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecC-C-CC--CC-ceeccCCCceEEEeecCc
Q 021291           97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDS-L-CD--SK-DDVPAEGPKYMAVAGEQL  171 (314)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~--~~-~~~~~~~~~~~~~~g~~d  171 (314)
                      ....  +............+.+... .......+....++.+.........+ . .-  .. ++++|++..++++ -...
T Consensus       149 ~~~~--l~~~~l~~P~~iavdp~~g-~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~a-D~~~  224 (349)
T 3v64_C          149 HRKV--LLWQSLEKPRAIALHPMEG-TIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWV-DAKH  224 (349)
T ss_dssp             SCEE--EECTTCSCEEEEEEETTTT-EEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEE-ETTT
T ss_pred             ceEE--EEeCCCCCcceEEEecCcC-eEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEE-ECCC
Confidence            3211  1111111112222221111 11111111112333332211111111 1 11  11 8999888777764 4446


Q ss_pred             CeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecC
Q 021291          172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH  251 (314)
Q Consensus       172 ~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h  251 (314)
                      +.|..+|+........+..        .    ......++ +. .   +. ++++-...+.|..+|..+ ++.+..+...
T Consensus       225 ~~I~~~~~dG~~~~~~~~~--------~----~~~P~gia-v~-~---~~-ly~td~~~~~V~~~~~~~-G~~~~~i~~~  285 (349)
T 3v64_C          225 HVIERANLDGSHRKAVISQ--------G----LPHPFAIT-VF-E---DS-LYWTDWHTKSINSANKFT-GKNQEIIRNK  285 (349)
T ss_dssp             TEEEEEETTSCSCEEEECS--------S----CSSEEEEE-EE-T---TE-EEEEETTTTEEEEEETTT-CCSCEEEECS
T ss_pred             CEEEEEeCCCCceEEEEeC--------C----CCCceEEE-EE-C---CE-EEEecCCCCeEEEEEccC-CCccEEeccC
Confidence            8899999874332222221        1    12344555 52 1   33 666666778888888655 5555555543


Q ss_pred             CcceEEEEE
Q 021291          252 LEPVLCLSI  260 (314)
Q Consensus       252 ~~~v~~~~~  260 (314)
                      .....+|++
T Consensus       286 ~~~p~gi~v  294 (349)
T 3v64_C          286 LHFPMDIHT  294 (349)
T ss_dssp             CSCCCCEEE
T ss_pred             CCCCceEEE
Confidence            344455555

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.58  E-value=0.054  Score=51.29  Aligned_cols=76  Identities=11%  Similarity=0.031  Sum_probs=50.3

Q ss_pred             CCceeEEEEccC------CCEEEEecC-CCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEE
Q 021291           18 RASVTDVCFHQT------KPILFAGTT-GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC   90 (314)
Q Consensus        18 ~~~v~~~~~~~~------~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~i   90 (314)
                      ...|.|+++.|.      .++++.|.. |++|+|+++.+.+.+........ ....++.+.......+|..|-.||.+.-
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~-~~p~si~l~~~~~~~~L~igl~dG~l~~  631 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGE-IIPRSILMTTFESSHYLLCALGDGALFY  631 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSS-CCEEEEEEEEETTEEEEEEEETTSEEEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCC-CCCcEEEEEEeCCCcEEEEEeCCCeEEE
Confidence            467999999863      368999986 99999999988766654433211 1234444432113457888888998866


Q ss_pred             EeCC
Q 021291           91 WDIE   94 (314)
Q Consensus        91 wd~~   94 (314)
                      +.+.
T Consensus       632 ~~~d  635 (1158)
T 3ei3_A          632 FGLN  635 (1158)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            6543

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.54  E-value=0.017  Score=44.43  Aligned_cols=188  Identities=12%  Similarity=0.077  Sum_probs=100.1

Q ss_pred             cEEEEEEcccCCCCeEE-EeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCc
Q 021291           64 GIVSVATGPSIGLNKVI-SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE  142 (314)
Q Consensus        64 ~v~~~~~~~~~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (314)
                      .+..++|+|  +++.|+ +...++.|...|.. ++..+  .+.+........                            
T Consensus        28 ~lSGla~~~--~~~~L~aV~d~~~~I~~ld~~-g~v~~--~i~l~g~~D~EG----------------------------   74 (255)
T 3qqz_A           28 NISSLTWSA--QSNTLFSTINKPAAIVEMTTN-GDLIR--TIPLDFVKDLET----------------------------   74 (255)
T ss_dssp             CEEEEEEET--TTTEEEEEEETTEEEEEEETT-CCEEE--EEECSSCSSEEE----------------------------
T ss_pred             CcceeEEeC--CCCEEEEEECCCCeEEEEeCC-CCEEE--EEecCCCCChHH----------------------------
Confidence            499999999  666555 56678889999987 54332  111111000000                            


Q ss_pred             eeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCce
Q 021291          143 TVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFV  222 (314)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~  222 (314)
                                 +++.+++. +++ +...++.+.++++.....+........ .. + ....+...-.++ |+|.   +. 
T Consensus        75 -----------Ia~~~~g~-~~v-s~E~~~~l~~~~v~~~~~i~~~~~~~~-~~-~-~~~~N~g~EGLA-~d~~---~~-  133 (255)
T 3qqz_A           75 -----------IEYIGDNQ-FVI-SDERDYAIYVISLTPNSEVKILKKIKI-PL-Q-ESPTNCGFEGLA-YSRQ---DH-  133 (255)
T ss_dssp             -----------EEECSTTE-EEE-EETTTTEEEEEEECTTCCEEEEEEEEC-CC-S-SCCCSSCCEEEE-EETT---TT-
T ss_pred             -----------eEEeCCCE-EEE-EECCCCcEEEEEcCCCCeeeeeeeecc-cc-c-cccccCCcceEE-EeCC---CC-
Confidence                       44555554 333 454568899998765442221111000 00 0 011233356676 9997   33 


Q ss_pred             EEEEeecCCcEEEEEcc--CCCCceEeee-------cCCcceEEEEEeCCC-CeEEEecCCCcEEEEecCCCee------
Q 021291          223 NVLAGYEDGSILVWDIR--NPGIPLTAMK-------VHLEPVLCLSIDESC-NGGISGGADQKIVLYNLDHSTY------  286 (314)
Q Consensus       223 ~l~~g~~dg~i~vwd~~--~~~~~~~~~~-------~h~~~v~~~~~~~~~-~~l~s~s~dg~i~iw~~~~~~~------  286 (314)
                      .|+++.+.....+|.++  .....+..+.       .+...+.+++++|.. .+++.....+.+.++|.+..-.      
T Consensus       134 ~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~  213 (255)
T 3qqz_A          134 TFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLT  213 (255)
T ss_dssp             EEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECS
T ss_pred             EEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcC
Confidence            34445444444555543  1112222221       123356889998754 4455555667777777654311      


Q ss_pred             ---------eEeeeeeeecCCCceecee
Q 021291          287 ---------VLFGIGFVCDQEGNKFGTT  305 (314)
Q Consensus       287 ---------~~~~~~~~~~~~~~~~~~~  305 (314)
                               +.+..|++++++|.++..+
T Consensus       214 ~g~~~l~~~~~qpEGia~d~~G~lyIvs  241 (255)
T 3qqz_A          214 KGSRGLSHNIKQAEGVAMDASGNIYIVS  241 (255)
T ss_dssp             TTGGGCSSCCCSEEEEEECTTCCEEEEE
T ss_pred             CccCCcccccCCCCeeEECCCCCEEEEc
Confidence                     1235788899999877664

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.54  E-value=0.0036  Score=55.67  Aligned_cols=74  Identities=12%  Similarity=0.138  Sum_probs=50.2

Q ss_pred             eeEEEEccCCCEEEEecC-CCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEee-cC-----CeEEEEeC
Q 021291           21 VTDVCFHQTKPILFAGTT-GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG-RD-----GTVKCWDI   93 (314)
Q Consensus        21 v~~~~~~~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~d-----g~v~iwd~   93 (314)
                      ..++++..++++++.|+. +..+.+||..+.+....-..+.. ..-.+++..+  +++.++.|+ .+     ..+.+||.
T Consensus       245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~-R~~~s~~~~~--dg~iyv~GG~~~~~~~~~~~e~yd~  321 (656)
T 1k3i_A          245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVA-RGYQSSATMS--DGRVFTIGGSWSGGVFEKNGEVYSP  321 (656)
T ss_dssp             SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSC-CSSCEEEECT--TSCEEEECCCCCSSSCCCCEEEEET
T ss_pred             cccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCcc-ccccceEEec--CCeEEEEeCcccCCcccccceEeCC
Confidence            345677789999999884 55899999987765433222221 1123455666  778888888 34     57999999


Q ss_pred             CCCC
Q 021291           94 ENGG   97 (314)
Q Consensus        94 ~~~~   97 (314)
                      .+.+
T Consensus       322 ~t~~  325 (656)
T 1k3i_A          322 SSKT  325 (656)
T ss_dssp             TTTE
T ss_pred             CCCc
Confidence            8764

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.52  E-value=0.049  Score=49.31  Aligned_cols=185  Identities=12%  Similarity=0.053  Sum_probs=102.4

Q ss_pred             CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEE-EeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeee
Q 021291           40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSL  118 (314)
Q Consensus        40 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (314)
                      ..|+..++...+....+...   ..+..|+|.+  ....|+ +-...+.|+.+++............+...         
T Consensus       404 ~~Ir~i~l~~~~~~~l~~~~---~~~~gl~~d~--~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~---------  469 (791)
T 3m0c_C          404 HEVRKMTLDRSEYTSLIPNL---RNVVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD---------  469 (791)
T ss_dssp             SSEEEECTTSCCCEEEECSC---SSEEEEEEET--TTTEEEEEETTTTEEEEEEC--------CEEEECSS---------
T ss_pred             cceeEeeccCCcceeeecCC---CceEEEeecc--cCCeeEEeeccceeEEEEeccCCCCCcceeEEEecC---------
Confidence            45888888766554444333   3478999988  545544 44456788888886532100000000000         


Q ss_pred             eeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCC
Q 021291          119 VKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPN  198 (314)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~  198 (314)
                                                   +..-.++++.+.+.++++ +-...+.|.+.++........+..        
T Consensus       470 -----------------------------l~~P~GLAvD~~~~~LY~-tD~~~~~I~v~~ldG~~~~~l~~~--------  511 (791)
T 3m0c_C          470 -----------------------------IQAPDGLAVDWIHSNIYW-TDSVLGTVSVADTKGVKRKTLFRE--------  511 (791)
T ss_dssp             -----------------------------CSCCCEEEEETTTTEEEE-EETTTTEEEEEETTSSSEEEEEEC--------
T ss_pred             -----------------------------CCCcceeeeeecCCcEEE-EecCCCeEEEEeCCCCeEEEEEeC--------
Confidence                                         000011667777777766 455568999999875443322221        


Q ss_pred             cCCCCCceeeeEEEecCCCCCCceEEEEeec-CCcEEEEEccCCCCceEee-ecCCcceEEEEEeCCCCeE-EEecCCCc
Q 021291          199 FSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE-DGSILVWDIRNPGIPLTAM-KVHLEPVLCLSIDESCNGG-ISGGADQK  275 (314)
Q Consensus       199 h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~-dg~i~vwd~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l-~s~s~dg~  275 (314)
                          .......|+ +.|..  |. ++++-.. .+.|.+.++.  +.....+ ...-...+.|++++....| ++-...+.
T Consensus       512 ----~l~~P~gIa-VDp~~--g~-LYwtD~g~~~~I~~~~~d--G~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~  581 (791)
T 3m0c_C          512 ----NGSKPRAIV-VDPVH--GF-MYWTDWGTPAKIKKGGLN--GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS  581 (791)
T ss_dssp             ----TTCCEEEEE-EETTT--TE-EEEEECSSSCEEEEEETT--SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             ----CCCCcceEE-EecCC--CC-EEEecCCCCCeEEEEecC--CCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCc
Confidence                112356676 88862  33 4444333 3778888887  4433333 3333578899999655544 44455678


Q ss_pred             EEEEecCCCee
Q 021291          276 IVLYNLDHSTY  286 (314)
Q Consensus       276 i~iw~~~~~~~  286 (314)
                      |...+++....
T Consensus       582 I~~~d~dG~~~  592 (791)
T 3m0c_C          582 ISSIDVNGGNR  592 (791)
T ss_dssp             EEEEETTSCSC
T ss_pred             EEEEecCCCce
Confidence            99999875543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.52  E-value=0.042  Score=48.44  Aligned_cols=204  Identities=7%  Similarity=-0.120  Sum_probs=119.5

Q ss_pred             CceeEEEEccCC-CEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeE-EEeecCCeEEEEeCCCC
Q 021291           19 ASVTDVCFHQTK-PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKV-ISQGRDGTVKCWDIENG   96 (314)
Q Consensus        19 ~~v~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~v~iwd~~~~   96 (314)
                      ..+..++|++.+ .++.+-..++.|..++++.......+....  .....|++.+  .+..| ++-...+.|.+.++...
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~--~~P~GlAvD~--~~~~LY~tD~~~~~I~v~~~dG~  112 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGL--DYPEGMAVDW--LGKNLYWADTGTNRIEVSKLDGQ  112 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC--SCCCEEEEET--TTTEEEEEETTTTEEEEEETTST
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCC--CCcceEEEEe--CCCEEEEEECCCCEEEEEecCCC
Confidence            456789999854 455566678899999987544333333221  2356888876  44544 45455678999988754


Q ss_pred             CCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEE
Q 021291           97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI  176 (314)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v  176 (314)
                      ...   .+.........                                       .+++.|....++.+--+..+.|..
T Consensus       113 ~~~---~l~~~~l~~P~---------------------------------------~iavdp~~G~lY~tD~g~~~~I~r  150 (628)
T 4a0p_A          113 HRQ---VLVWKDLDSPR---------------------------------------ALALDPAEGFMYWTEWGGKPKIDR  150 (628)
T ss_dssp             TCE---EEECSSCCCEE---------------------------------------EEEEETTTTEEEEEECSSSCEEEE
T ss_pred             cEE---EEEeCCCCCcc---------------------------------------cEEEccCCCeEEEeCCCCCCEEEE
Confidence            311   11000000000                                       056777655666543222467888


Q ss_pred             EecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceE
Q 021291          177 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVL  256 (314)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~  256 (314)
                      .++........+.             .-.....++ ++++   ++.+.++-...+.|..+|++. ... ..+........
T Consensus       151 ~~~dG~~~~~l~~-------------~~~~P~Gla-lD~~---~~~LY~aD~~~~~I~~~d~dG-~~~-~v~~~~l~~P~  211 (628)
T 4a0p_A          151 AAMDGSERTTLVP-------------NVGRANGLT-IDYA---KRRLYWTDLDTNLIESSNMLG-LNR-EVIADDLPHPF  211 (628)
T ss_dssp             EETTSCSCEEEEC-------------SCSSEEEEE-EETT---TTEEEEEETTTTEEEEEETTS-CSC-EEEEECCSCEE
T ss_pred             EeCCCCceEEEEC-------------CCCCcceEE-Eccc---cCEEEEEECCCCEEEEEcCCC-Cce-EEeeccCCCce
Confidence            8876443322222             122456676 8886   332566666778899999874 222 34444444567


Q ss_pred             EEEEeCCCCeEEEecCCCcEEEEecCCCeeeE
Q 021291          257 CLSIDESCNGGISGGADQKIVLYNLDHSTYVL  288 (314)
Q Consensus       257 ~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~  288 (314)
                      .|++.. +..+++-...+.|...|..+++...
T Consensus       212 glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~  242 (628)
T 4a0p_A          212 GLTQYQ-DYIYWTDWSRRSIERANKTSGQNRT  242 (628)
T ss_dssp             EEEEET-TEEEEEETTTTEEEEEETTTCCSCE
T ss_pred             EEEEEC-CEEEEecCCCCEEEEEECCCCCceE
Confidence            888876 4555666668889999977775443

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.50  E-value=0.0023  Score=57.19  Aligned_cols=218  Identities=8%  Similarity=-0.036  Sum_probs=104.1

Q ss_pred             CceeEEEEccCCCEEE-EecCCCeEEEEeCCC----CeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeC
Q 021291           19 ASVTDVCFHQTKPILF-AGTTGGELRIWDTVQ----HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI   93 (314)
Q Consensus        19 ~~v~~~~~~~~~~~l~-s~~~dg~v~iwd~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~   93 (314)
                      ..+..++|++.+..|+ +-...+.|+.+++..    ......+....  .....|++.+. .++++++-...+.|.++++
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~--~~P~glavD~~-~g~LY~tD~~~~~I~v~d~  482 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI--QAPDGLAVDWI-HSNIYWTDSVLGTVSVADT  482 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC----CCCEECCCS-SSBCEECCTTTSCEEEEBS
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCC--CCcceEEEEee-CCcEEEEeccCCeEEEEec
Confidence            3466889998655554 445567899998875    12111111111  22456788751 3344455455788999998


Q ss_pred             CCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccC--Cc--eee-ecCCCCCCceeccCCCceEEEee
Q 021291           94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREV--GE--TVD-TDSLCDSKDDVPAEGPKYMAVAG  168 (314)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~-~~~~~~~~~~~~~~~~~~~~~~g  168 (314)
                      .......  +............+.+.... ......+....++.+..  ..  .+. ..+.....++|+|++..++++ -
T Consensus       483 dg~~~~~--l~~~~~~~P~giavDp~~g~-ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~a-D  558 (699)
T 1n7d_A          483 KGVKRKT--LFREQGSKPRAIVVDPVHGF-MYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWV-D  558 (699)
T ss_dssp             SSCCEEE--ECCCSSCCCCCEECCSSSSC-CEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEE-E
T ss_pred             CCCceEE--EEeCCCCCcceEEEccCCCc-EEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEE-e
Confidence            7643211  11111111111111111111 11111111122222221  11  111 111112229999988877764 4


Q ss_pred             cCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEee
Q 021291          169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM  248 (314)
Q Consensus       169 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~  248 (314)
                      ...+.|..+|+..... ..+..       ...  .......++ +..    +. ++++....+.|..+|..+ ++.+..+
T Consensus       559 ~~~~~I~~~d~dG~~~-~~~~~-------~~~--~~~~P~gla-vd~----~~-lywtd~~~~~V~~~d~~~-G~~~~~i  621 (699)
T 1n7d_A          559 SKLHSISSIDVNGGNR-KTILE-------DEK--RLAHPFSLA-VFE----DK-VFWTDIINEAIFSANRLT-GSDVNLL  621 (699)
T ss_dssp             TTTTEEEEECSSSSCC-EEECC-------CSS--SCSSCCCCE-EET----TE-EEEECSTTTCEEEEETTT-EEEEECC
T ss_pred             cCCCeEEEEccCCCce-EEEEe-------cCC--cCCCceEeE-EEC----CE-EEEEeCCCCeEEEEEccC-CCceEEe
Confidence            4468899999864332 22221       000  011223333 432    22 666777788999999876 6656555


Q ss_pred             ecCCcceEEEEE
Q 021291          249 KVHLEPVLCLSI  260 (314)
Q Consensus       249 ~~h~~~v~~~~~  260 (314)
                      .......+.|++
T Consensus       622 ~~~~~~P~~i~v  633 (699)
T 1n7d_A          622 AENLLSPEDMVL  633 (699)
T ss_dssp             CTTCSSCCCCCB
T ss_pred             ecCCCCCcEEEE
Confidence            433333445544

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.45  E-value=0.032  Score=45.39  Aligned_cols=79  Identities=18%  Similarity=0.188  Sum_probs=47.3

Q ss_pred             EEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeE--EEEEec-cCCcccEEEEEEcccCC---CCeEEEeec-
Q 021291           12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT--VSSSWV-HSAAHGIVSVATGPSIG---LNKVISQGR-   84 (314)
Q Consensus        12 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~~-~~~~~~v~~~~~~~~~~---~~~l~s~~~-   84 (314)
                      ..+-..-..-..++|.|+|+++++ ..+|.|++++  +++.  +..+.. .........|+++|  +   +..|+.+.. 
T Consensus        24 ~~va~~l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p--df~~~g~lYv~~~~   98 (352)
T 2ism_A           24 EEVVGGLEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP--RFPQEPYVYAYRTV   98 (352)
T ss_dssp             EEEECCCSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT--TTTTSCEEEEEEEE
T ss_pred             EEEECCCCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC--CCCCCCEEEEEEec
Confidence            333333445679999999986655 5569999998  4442  222210 11124578999999  7   445554433 


Q ss_pred             C-----CeEEEEeCCC
Q 021291           85 D-----GTVKCWDIEN   95 (314)
Q Consensus        85 d-----g~v~iwd~~~   95 (314)
                      .     +.|..|+...
T Consensus        99 ~~~~~~~~v~r~~~~~  114 (352)
T 2ism_A           99 AEGGLRNQVVRLRHLG  114 (352)
T ss_dssp             CTTSSEEEEEEEEECS
T ss_pred             CCCCCccEEEEEEeCC
Confidence            2     5666666653

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.43  E-value=0.067  Score=48.70  Aligned_cols=244  Identities=11%  Similarity=0.050  Sum_probs=122.6

Q ss_pred             CCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEecc-----CCcccEEEEEEcccCCCCeEEEeecCCeEEEEe
Q 021291           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVH-----SAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD   92 (314)
Q Consensus        18 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd   92 (314)
                      ...|.++...+++.+.+ |+.++-|.+||..+++........     -....|.++...+  ++. |..|+.+ -|.+||
T Consensus       214 ~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~--~g~-lWigt~~-Gl~~~~  288 (795)
T 4a2l_A          214 TKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDS--QNR-LWIGTFN-DLNIYH  288 (795)
T ss_dssp             CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECT--TSC-EEEEESS-CEEEEE
T ss_pred             CCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcC--CCC-EEEEeCC-hhheEc
Confidence            45688888888776555 444434889998776554322211     0124599999887  755 4445555 588999


Q ss_pred             CCCCCCCCCC-----eeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecC-C-----CCCC---ceecc
Q 021291           93 IENGGLSSNP-----SLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDS-L-----CDSK---DDVPA  158 (314)
Q Consensus        93 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~---~~~~~  158 (314)
                      ..++....-.     ...+....  ...+..+.....-....++....++........... .     ....   +...+
T Consensus       289 ~~~~~~~~~~~~~~~~~~l~~~~--i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~  366 (795)
T 4a2l_A          289 EGTDSFASYSSNPVENGSLSQRS--VRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK  366 (795)
T ss_dssp             TTTTEEEEECCCTTSTTSCSSSC--EEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECT
T ss_pred             CCCCeEEEEecCCCCCCCCCCCc--EEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECC
Confidence            8765421100     00000111  111111111111111112222222222221111100 0     0111   33344


Q ss_pred             CCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcC--CCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEE
Q 021291          159 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFS--SKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW  236 (314)
Q Consensus       159 ~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~--~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vw  236 (314)
                      +|. +.+  |+.++-|..||..+++... +....     ...  .-....+.++. ..++   |+ .|..|+.++-|..|
T Consensus       367 ~g~-lWi--Gt~~~Gl~~~~~~~~~~~~-~~~~~-----~~~~~~l~~~~v~~i~-~d~~---g~-~lWigt~~~Gl~~~  432 (795)
T 4a2l_A          367 DKN-LWI--GTNDGGLNLYNPITQRFTS-YTLQE-----DESARGIGSNNIKAVY-VDEK---KS-LVYIGTHAGGLSIL  432 (795)
T ss_dssp             TSC-EEE--EESSSCEEEECTTTCCEEE-ECCC-----------CCSCSCEEEEE-EETT---TT-EEEEEETTTEEEEE
T ss_pred             CCC-EEE--EECCCCeEEEcCCCCcEEE-EecCC-----CCcccCCCCccEEEEE-EcCC---CC-EEEEEeCcCceeEE
Confidence            554 332  5556679999988765332 22100     000  00123566665 5554   44 47778887789999


Q ss_pred             EccCCCCceEeee-----cCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCee
Q 021291          237 DIRNPGIPLTAMK-----VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTY  286 (314)
Q Consensus       237 d~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~  286 (314)
                      |..+ ++. ..+.     .....|.++..++++.+.+.. .+| +.+|+.++++.
T Consensus       433 d~~~-~~~-~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~G-l~~~~~~~~~~  483 (795)
T 4a2l_A          433 HRNS-GQV-ENFNQRNSQLVNENVYAILPDGEGNLWLGT-LSA-LVRFNPEQRSF  483 (795)
T ss_dssp             ETTT-CCE-EEECTTTSCCSCSCEEEEEECSSSCEEEEE-SSC-EEEEETTTTEE
T ss_pred             eCCC-CcE-EEeecCCCCcCCCeeEEEEECCCCCEEEEe-cCc-eeEEeCCCCeE
Confidence            9886 433 2232     234579999999888755444 444 88898877654

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.41  E-value=0.017  Score=46.03  Aligned_cols=103  Identities=10%  Similarity=0.036  Sum_probs=66.0

Q ss_pred             cCeEEEEecC---CCceeeeecccccCCCCCcCCC-------CCceeeeEEEecCCCCCCceEEEEeecC-CcEEEEEcc
Q 021291          171 LSEVEIWDLN---TAERCTRLHQNSCGGSPNFSSK-------GRGMCMAVQAYLPSKSQGFVNVLAGYED-GSILVWDIR  239 (314)
Q Consensus       171 d~~i~vwd~~---~~~~~~~~~~~~~~~~~~h~~~-------~~~~~~~~~~~~p~~~~g~~~l~~g~~d-g~i~vwd~~  239 (314)
                      +..|..||+.   +++.+......      .....       ....+..++ ..++   |+ ..++++.. +.|..++.+
T Consensus        99 ~~~v~~~Dl~~~~tg~~~~~~dL~------~~~~~~~~~~g~~~~~~nDva-vD~~---Gn-aYVt~s~~~~~I~rV~pd  167 (334)
T 2p9w_A           99 ASSFHSFNLPLSENSKPVWSVNFE------KVQDEFEKKAGKRPFGVVQSA-QDRD---GN-SYVAFALGMPAIARVSAD  167 (334)
T ss_dssp             CCEEEEEESSCCTTCCCSEEEESH------HHHHHHHHHHSSCCEEEEEEE-ECTT---SC-EEEEEEESSCEEEEECTT
T ss_pred             CCEEEEEcCCcCCCCCEEEEecCc------cccccccccccccccCCceeE-ECCC---CC-EEEeCCCCCCeEEEEeCC
Confidence            5779999998   77765544311      01000       123466776 8877   65 66777777 777777766


Q ss_pred             CCCCceEeeecC------CcceEEEEEeCCCCeEEEecCCCcEEEEecCCCee
Q 021291          240 NPGIPLTAMKVH------LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTY  286 (314)
Q Consensus       240 ~~~~~~~~~~~h------~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~  286 (314)
                        ++.+..+...      ....+.|+++|++..|+....+|.+..+|+.+...
T Consensus       168 --G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~  218 (334)
T 2p9w_A          168 --GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYA  218 (334)
T ss_dssp             --SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSC
T ss_pred             --CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcc
Confidence              3333332211      12367999999998887776699999999885433

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.33  E-value=0.041  Score=43.94  Aligned_cols=189  Identities=13%  Similarity=0.066  Sum_probs=105.1

Q ss_pred             EEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEE-EeecCCeEEEEeCCCCCCCCCCeeeeeccee
Q 021291           33 LFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCWDIENGGLSSNPSLTIKTNSY  111 (314)
Q Consensus        33 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~  111 (314)
                      |+.+.. ..|+..|+.+.+....+...   ..+..++|.+  .++.|+ +-..++.|..+++............+...  
T Consensus         4 ll~~~~-~~I~~i~~~~~~~~~~~~~~---~~p~g~~~d~--~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~--   75 (316)
T 1ijq_A            4 LFFTNR-HEVRKMTLDRSEYTSLIPNL---RNVVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD--   75 (316)
T ss_dssp             EEEECB-SSEEEEETTSCCCEEEECSC---SSEEEEEEET--TTTEEEEEETTTTEEEEEEC--------CEEEECSS--
T ss_pred             EEEECC-CeEEEEECCCcceEehhcCC---CceEEEEEEe--CCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCC--
Confidence            443333 45899999877655544432   3478999998  555555 44456889999887521000000000000  


Q ss_pred             eEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceeeeeccc
Q 021291          112 HFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQN  191 (314)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~  191 (314)
                                                          +..-..+++.+.+..+++ +-...+.|.++|+........+.. 
T Consensus        76 ------------------------------------~~~p~glavd~~~~~ly~-~d~~~~~I~~~~~~g~~~~~~~~~-  117 (316)
T 1ijq_A           76 ------------------------------------IQAPDGLAVDWIHSNIYW-TDSVLGTVSVADTKGVKRKTLFRE-  117 (316)
T ss_dssp             ------------------------------------CSCCCEEEEETTTTEEEE-EETTTTEEEEEETTSSSEEEEEEC-
T ss_pred             ------------------------------------CCCcCEEEEeecCCeEEE-EECCCCEEEEEeCCCCceEEEEEC-
Confidence                                                000000567666666665 344468899999875433222221 


Q ss_pred             ccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecC-CcEEEEEccCCCCceEeee-cCCcceEEEEEeCCCCeE-E
Q 021291          192 SCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED-GSILVWDIRNPGIPLTAMK-VHLEPVLCLSIDESCNGG-I  268 (314)
Q Consensus       192 ~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~d-g~i~vwd~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l-~  268 (314)
                                 .......++ ++|.+  |. ++++.... +.|...+++  +.....+. ..-...+.|++++++..| +
T Consensus       118 -----------~~~~P~~ia-vdp~~--g~-ly~~d~~~~~~I~~~~~d--G~~~~~~~~~~~~~P~gla~d~~~~~lY~  180 (316)
T 1ijq_A          118 -----------NGSKPRAIV-VDPVH--GF-MYWTDWGTPAKIKKGGLN--GVDIYSLVTENIQWPNGITLDLLSGRLYW  180 (316)
T ss_dssp             -----------TTCCEEEEE-EETTT--TE-EEEEECSSSCEEEEEETT--SCCEEEEECSSCSCEEEEEEETTTTEEEE
T ss_pred             -----------CCCCcceEE-eCCCC--CE-EEEEccCCCCeEEEEcCC--CCCeEEEEECCCCCceEEEEeccCCEEEE
Confidence                       112456666 88862  33 44444333 788888886  44333332 233567899999865555 5


Q ss_pred             EecCCCcEEEEecCCC
Q 021291          269 SGGADQKIVLYNLDHS  284 (314)
Q Consensus       269 s~s~dg~i~iw~~~~~  284 (314)
                      +-+..+.|..+|++..
T Consensus       181 ~D~~~~~I~~~d~dg~  196 (316)
T 1ijq_A          181 VDSKLHSISSIDVNGG  196 (316)
T ss_dssp             EETTTTEEEEEETTSC
T ss_pred             EECCCCeEEEEecCCC
Confidence            5556778999998743

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.30  E-value=0.056  Score=44.79  Aligned_cols=191  Identities=12%  Similarity=0.020  Sum_probs=105.8

Q ss_pred             EEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEe-ecCCeEEEEeCCCCCCCCCCeeeeecce
Q 021291           32 ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ-GRDGTVKCWDIENGGLSSNPSLTIKTNS  110 (314)
Q Consensus        32 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~  110 (314)
                      +|+.+. ...|+..++........+...   ..+..|+|.+  ..+.|+.+ ...+.|+.+++.................
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~---~~~~~l~~d~--~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~  158 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTSLIPNL---RNVVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI  158 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEEEECSC---SCEEEEEEET--TTTEEEEEETTTTEEEEEEC------CCCEEEECSSC
T ss_pred             eeEEec-cceeEEEccCCcceeEecccc---CcceEEeeee--ccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence            444433 357999998866554444332   3488999998  55555544 4567888888865321000000000000


Q ss_pred             eeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceeeeecc
Q 021291          111 YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQ  190 (314)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~  190 (314)
                      ..     +.+                                 +++.+.+..+++ +-...+.|.+.++........+..
T Consensus       159 ~~-----p~g---------------------------------lavD~~~~~lY~-~d~~~~~I~~~~~~g~~~~~l~~~  199 (400)
T 3p5b_L          159 QA-----PDG---------------------------------LAVDWIHSNIYW-TDSVLGTVSVADTKGVKRKTLFRE  199 (400)
T ss_dssp             SC-----EEE---------------------------------EEEETTTTEEEE-EETTTTEEEEECTTTCSEEEEEEC
T ss_pred             CC-----ccc---------------------------------EEEEecCCceEE-EECCCCeEEEEeCCCCceEEEEeC
Confidence            00     000                                 556665566665 444468899999875543333321


Q ss_pred             cccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEe-ecCCcEEEEEccCCCCceEee-ecCCcceEEEEEeCCCCeE-
Q 021291          191 NSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG-YEDGSILVWDIRNPGIPLTAM-KVHLEPVLCLSIDESCNGG-  267 (314)
Q Consensus       191 ~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g-~~dg~i~vwd~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l-  267 (314)
                                  .......++ +.|..  |. ++++- +..+.|...+++.  .....+ ...-...+.|++++++..| 
T Consensus       200 ------------~~~~P~~ia-vdp~~--g~-ly~td~~~~~~I~~~~~dG--~~~~~~~~~~l~~P~glavd~~~~~lY  261 (400)
T 3p5b_L          200 ------------NGSKPRAIV-VDPVH--GF-MYWTDWGTPAKIKKGGLNG--VDIYSLVTENIQWPNGITLDLLSGRLY  261 (400)
T ss_dssp             ------------SSCCEEEEE-EETTT--TE-EEEEECSSSCCEEEEETTS--CSCEEEECSSCSCEEEEEEETTTTEEE
T ss_pred             ------------CCCCcceEE-Eeccc--Ce-EEEEeCCCCCEEEEEeCCC--CccEEEEECCCCceEEEEEEeCCCEEE
Confidence                        112355666 88862  33 44443 2347888888873  333333 3333567899999766555 


Q ss_pred             EEecCCCcEEEEecCCCe
Q 021291          268 ISGGADQKIVLYNLDHST  285 (314)
Q Consensus       268 ~s~s~dg~i~iw~~~~~~  285 (314)
                      ++-+..+.|..+|++...
T Consensus       262 ~aD~~~~~I~~~d~dG~~  279 (400)
T 3p5b_L          262 WVDSKLHSISSIDVNGGN  279 (400)
T ss_dssp             EEETTTTEEEEEETTSCC
T ss_pred             EEECCCCEEEEEeCCCCc
Confidence            444556789999987543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.27  E-value=0.086  Score=46.42  Aligned_cols=207  Identities=6%  Similarity=-0.093  Sum_probs=112.8

Q ss_pred             CceeEEEEccCCCEE-EEecCCCeEEEEeCCCCeE-EEEEeccCCcccEEEEEEcccCCCCeEE-EeecCCeEEEEeCCC
Q 021291           19 ASVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRT-VSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCWDIEN   95 (314)
Q Consensus        19 ~~v~~~~~~~~~~~l-~s~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~v~iwd~~~   95 (314)
                      +....++|++.+..| .+=...+.|..++++.... ...+....  .....|++.+  .++.|+ +-...+.|.+.++..
T Consensus        40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~--~~P~GlAvD~--~~~~ly~~d~~~~~I~v~~~dG  115 (619)
T 3s94_A           40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGL--LSPDGLACDW--LGEKLYWTDSETNRIEVSNLDG  115 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSC--SCEEEEEEET--TTTEEEEEETTTTEEEEEETTS
T ss_pred             CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCC--CCcCeEEEEe--cCCEEEEEeCCCCEEEEEECCC
Confidence            456789999855544 4545577898898875432 22232221  3378999987  555555 445578899999875


Q ss_pred             CCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEE
Q 021291           96 GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVE  175 (314)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~  175 (314)
                      .....  +.. .                                       .+....++++.|.+..++.+--...+.|.
T Consensus       116 ~~~~~--l~~-~---------------------------------------~l~~P~~Iavdp~~g~ly~tD~g~~~~I~  153 (619)
T 3s94_A          116 SLRKV--LFW-Q---------------------------------------ELDQPRAIALDPSSGFMYWTDWGEVPKIE  153 (619)
T ss_dssp             CSCEE--EEC-S---------------------------------------SCSCCCCEEEETTTTEEEEEECSSSCEEE
T ss_pred             CCEEE--EEe-C---------------------------------------CCCCCceEEEecCCCeEEEeccCCCCEEE
Confidence            43210  000 0                                       00011116787876666654322246777


Q ss_pred             EEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcce
Q 021291          176 IWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPV  255 (314)
Q Consensus       176 vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v  255 (314)
                      ..++.... ...+..       .    .-.....++ ++|++  ++ ++++-...+.|..+|+.. ........+.....
T Consensus       154 r~~~dG~~-~~~l~~-------~----~~~~P~Gla-ld~~~--~~-LY~aD~~~~~I~~~~~dG-~~~~~~~~~~~~~P  216 (619)
T 3s94_A          154 RAGMDGSS-RFIIIN-------S----EIYWPNGLT-LDYEE--QK-LYWADAKLNFIHKSNLDG-TNRQAVVKGSLPHP  216 (619)
T ss_dssp             EEETTSCS-CEEEEC-------S----SCSSEEEEE-EETTT--TE-EEEEETTTCCEEEESSSC-CEEC---------C
T ss_pred             EEECCCCc-eEEEEe-------C----CCCCCcEEE-EEccC--CE-EEEEeCCCCeEEEecCCC-CccEEEEeCCCCCc
Confidence            77765332 222221       0    122456676 88762  33 556666678899998874 22222222122233


Q ss_pred             EEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291          256 LCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF  289 (314)
Q Consensus       256 ~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~  289 (314)
                      ..|++..+ ..+++-...+.|...|..+++....
T Consensus       217 ~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~  249 (619)
T 3s94_A          217 FALTLFED-ILYWTDWSTHSILACNKYTGEGLRE  249 (619)
T ss_dssp             CCEEESSS-EEEEECTTTCSEEEEESSSCCCCEE
T ss_pred             eEEEEeCC-EEEEecCCCCEEEEEECCCCcccEE
Confidence            56777766 4556666778899999888765443

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.23  E-value=0.055  Score=43.27  Aligned_cols=181  Identities=15%  Similarity=0.033  Sum_probs=101.5

Q ss_pred             CCeEEEEeCCCCe--EEEEEeccCCcccEEEEEEcccCCCCeEE-EeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEE
Q 021291           39 GGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCK  115 (314)
Q Consensus        39 dg~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  115 (314)
                      ...|+..+++...  ....+...   ..+..++|.+  ..+.|+ +-...+.|..+++.......  ........     
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~~~---~~~~~ld~d~--~~~~lyw~D~~~~~I~r~~~~g~~~~~--~~~~~~l~-----   79 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVGGL---EDAAAVDFVF--SHGLIYWSDVSEEAIKRTEFNKTESVQ--NVVVSGLL-----   79 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEEEE---EEEEEEEEEG--GGTEEEEEETTTTEEEEEETTSSSCCC--EEEEECCS-----
T ss_pred             cCeEEEEECCCCceEEEEEecCC---CccEEEEEEe--CCCEEEEEECCCCcEEEEEccCCCceE--EEEcCCCC-----
Confidence            4579999987653  22222222   3367999998  545554 44557789999887653211  00000000     


Q ss_pred             eeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCC
Q 021291          116 LSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGG  195 (314)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~  195 (314)
                       .+                                 ..+++.+.+..++. +-...+.|.++++........+..     
T Consensus        80 -~p---------------------------------~glavd~~~g~ly~-~d~~~~~I~~~~~dG~~~~~l~~~-----  119 (318)
T 3sov_A           80 -SP---------------------------------DGLACDWLGEKLYW-TDSETNRIEVSNLDGSLRKVLFWQ-----  119 (318)
T ss_dssp             -CC---------------------------------CEEEEETTTTEEEE-EETTTTEEEEEETTSCSCEEEECS-----
T ss_pred             -Cc---------------------------------cEEEEEcCCCeEEE-EECCCCEEEEEECCCCcEEEEEeC-----
Confidence             00                                 00556666666665 344467899999865432222211     


Q ss_pred             CCCcCCCCCceeeeEEEecCCCCCCceEEEEe-ecCCcEEEEEccCCCCceEee-ecCCcceEEEEEeCCCCe-EEEecC
Q 021291          196 SPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG-YEDGSILVWDIRNPGIPLTAM-KVHLEPVLCLSIDESCNG-GISGGA  272 (314)
Q Consensus       196 ~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g-~~dg~i~vwd~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~-l~s~s~  272 (314)
                             .......++ +.|.+  |. ++++- +..+.|...+++  +.....+ ...-...+.|++++++.. .++-+.
T Consensus       120 -------~~~~P~gia-vdp~~--g~-ly~td~~~~~~I~r~~~d--G~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~  186 (318)
T 3sov_A          120 -------ELDQPRAIA-LDPSS--GF-MYWTDWGEVPKIERAGMD--GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAK  186 (318)
T ss_dssp             -------SCSSEEEEE-EEGGG--TE-EEEEECSSSCEEEEEETT--SCSCEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred             -------CCCCccEEE-EeCCC--CE-EEEEecCCCCEEEEEEcC--CCCeEEEEECCCCCccEEEEeccCCEEEEEECC
Confidence                   122345666 88762  33 34443 235788888887  3333333 222345689999985544 455566


Q ss_pred             CCcEEEEecCCC
Q 021291          273 DQKIVLYNLDHS  284 (314)
Q Consensus       273 dg~i~iw~~~~~  284 (314)
                      .+.|..++++..
T Consensus       187 ~~~I~~~d~dG~  198 (318)
T 3sov_A          187 LNFIHKSNLDGT  198 (318)
T ss_dssp             TTEEEEEETTSC
T ss_pred             CCEEEEEcCCCC
Confidence            788999998743

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.12  E-value=0.15  Score=46.32  Aligned_cols=242  Identities=10%  Similarity=0.004  Sum_probs=119.7

Q ss_pred             CCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEe-------ccCCcccEEEEEEcccCCCCeEEEeecCCeEEE
Q 021291           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW-------VHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC   90 (314)
Q Consensus        18 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~i   90 (314)
                      ...|.++...++|. |-.|+.++-|..++..++.......       ..-....|.++...+  ++ .|..|+.++-|..
T Consensus       312 ~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~--~g-~lWigt~~~Gl~~  387 (781)
T 3v9f_A          312 NASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDG--QG-KLWIGTDGGGINV  387 (781)
T ss_dssp             SSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECT--TS-CEEEEEBSSCEEE
T ss_pred             CCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcC--CC-CEEEEeCCCcEEE
Confidence            45789999988886 4556766668899877654332111       010124589998877  64 4666676667889


Q ss_pred             EeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccC--CceeeecCC--CCCC---ceeccCCCce
Q 021291           91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREV--GETVDTDSL--CDSK---DDVPAEGPKY  163 (314)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~---~~~~~~~~~~  163 (314)
                      ||..++....  . ............++........-.......++.+..  .........  ....   +...+++. +
T Consensus       388 ~~~~~~~~~~--~-~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-l  463 (781)
T 3v9f_A          388 FENGKRVAIY--N-KENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK-I  463 (781)
T ss_dssp             EETTEEEEEC--C------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE-E
T ss_pred             EECCCCeEEE--c-cCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC-E
Confidence            9987653211  0 000000000111111111111111111122333322  221111111  1111   33334443 4


Q ss_pred             EEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCC
Q 021291          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI  243 (314)
Q Consensus       164 ~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~  243 (314)
                      .+  |+. +-|..||..+++.......       .........+.++. ..++   |.  |..|+.++-|..||.++ ++
T Consensus       464 wi--gt~-~Gl~~~~~~~~~~~~~~~~-------~~~~~~~~~i~~i~-~d~~---g~--lWigt~~~Gl~~~~~~~-~~  526 (781)
T 3v9f_A          464 WI--GTH-AGVFVIDLASKKVIHHYDT-------SNSQLLENFVRSIA-QDSE---GR--FWIGTFGGGVGIYTPDM-QL  526 (781)
T ss_dssp             EE--EET-TEEEEEESSSSSCCEEECT-------TTSSCSCSCEEEEE-ECTT---CC--EEEEESSSCEEEECTTC-CE
T ss_pred             EE--EEC-CceEEEeCCCCeEEecccC-------cccccccceeEEEE-EcCC---CC--EEEEEcCCCEEEEeCCC-Ce
Confidence            33  333 4589999887654322211       00001123566665 5554   54  55555544577888765 32


Q ss_pred             ceEeeec----CCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCee
Q 021291          244 PLTAMKV----HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTY  286 (314)
Q Consensus       244 ~~~~~~~----h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~  286 (314)
                       ...+..    ....|.++..+++|.+.++. .+|.|..||..+++.
T Consensus       527 -~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~~  571 (781)
T 3v9f_A          527 -VRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNFDY  571 (781)
T ss_dssp             -EEEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTCCC
T ss_pred             -EEEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCCcE
Confidence             333321    23578999999998855544 467558888876653

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.09  E-value=0.073  Score=42.17  Aligned_cols=187  Identities=14%  Similarity=0.058  Sum_probs=101.1

Q ss_pred             eEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCC
Q 021291           51 RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN  130 (314)
Q Consensus        51 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (314)
                      +.+..+...   .....++|.+  +++++++-..++.|..||.....     .........      +..          
T Consensus        23 ~~~~~~p~~---~~pegia~~~--~g~lyv~d~~~~~I~~~d~~g~~-----~~~~~~~~~------p~g----------   76 (306)
T 2p4o_A           23 KIITSFPVN---TFLENLASAP--DGTIFVTNHEVGEIVSITPDGNQ-----QIHATVEGK------VSG----------   76 (306)
T ss_dssp             EEEEEECTT---CCEEEEEECT--TSCEEEEETTTTEEEEECTTCCE-----EEEEECSSE------EEE----------
T ss_pred             eEeEeCCCC---CCcceEEECC--CCCEEEEeCCCCeEEEECCCCce-----EEEEeCCCC------cee----------
Confidence            444455332   3378999999  87866676678899999987531     111111100      000          


Q ss_pred             CCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCc-CeEEEEecCCCceeeeecccccCCCCCcCCCCCceeee
Q 021291          131 EPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL-SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMA  209 (314)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  209 (314)
                                             +++.++|+ ++++....+ ..|..+|..+++.......       ..    ......
T Consensus        77 -----------------------ia~~~dG~-l~vad~~~~~~~v~~~d~~~g~~~~~~~~-------~~----~~~~~g  121 (306)
T 2p4o_A           77 -----------------------LAFTSNGD-LVATGWNADSIPVVSLVKSDGTVETLLTL-------PD----AIFLNG  121 (306)
T ss_dssp             -----------------------EEECTTSC-EEEEEECTTSCEEEEEECTTSCEEEEEEC-------TT----CSCEEE
T ss_pred             -----------------------EEEcCCCc-EEEEeccCCcceEEEEcCCCCeEEEEEeC-------CC----ccccCc
Confidence                                   56788887 444333222 2577778777765432221       00    111222


Q ss_pred             EEEecCCCCCCceEEEEeecCCcEEEEEccCCCC-ceEeee---------cCCcceEEEEEeCCCCeE-EEecCCCcEEE
Q 021291          210 VQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI-PLTAMK---------VHLEPVLCLSIDESCNGG-ISGGADQKIVL  278 (314)
Q Consensus       210 ~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~-~~~~~~---------~h~~~v~~~~~~~~~~~l-~s~s~dg~i~i  278 (314)
                      +. ..+.   +. .+++...++.|+++|... +. .+....         ..-...+.+  ++++.+| ++-...+.|..
T Consensus       122 ~~-~~~~---~~-~~v~d~~~g~i~~~d~~~-~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~  193 (306)
T 2p4o_A          122 IT-PLSD---TQ-YLTADSYRGAIWLIDVVQ-PSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLR  193 (306)
T ss_dssp             EE-ESSS---SE-EEEEETTTTEEEEEETTT-TEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEE
T ss_pred             cc-ccCC---Cc-EEEEECCCCeEEEEeCCC-CcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEE
Confidence            32 3332   32 455555688899998764 21 111000         111234556  6777544 56666789999


Q ss_pred             EecCC-Ce----eeE----eeeeeeecCCCceeceee
Q 021291          279 YNLDH-ST----YVL----FGIGFVCDQEGNKFGTTW  306 (314)
Q Consensus       279 w~~~~-~~----~~~----~~~~~~~~~~~~~~~~~w  306 (314)
                      ++++. ++    .++    ...+++.+++|..+.+.|
T Consensus       194 ~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~  230 (306)
T 2p4o_A          194 IPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATH  230 (306)
T ss_dssp             EEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECB
T ss_pred             EEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeC
Confidence            99875 32    111    134567778887766655

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.08  E-value=0.078  Score=42.26  Aligned_cols=216  Identities=9%  Similarity=0.101  Sum_probs=114.1

Q ss_pred             EecCCCCceeEEEEcc-CCCEEEEecCCCeEEEEeCCCCeEEEE-Eec----cCCcccEEEEEE---cccCCCCeEEEee
Q 021291           13 VLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSS-SWV----HSAAHGIVSVAT---GPSIGLNKVISQG   83 (314)
Q Consensus        13 ~l~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~----~~~~~~v~~~~~---~~~~~~~~l~s~~   83 (314)
                      .+.+..---.+++|.+ ++.++++.-..|+|..||...+..... +..    ......+..|.|   .|  ++.++++..
T Consensus         7 ~~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~--~grL~vv~~   84 (334)
T 2p9w_A            7 DVKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN--SKRLFAVMK   84 (334)
T ss_dssp             EECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS--CCEEEEEEE
T ss_pred             EecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC--CCcEEEEEc
Confidence            4445555567899988 455555555899999999875543333 221    111124689999   57  756666433


Q ss_pred             -------------cCCeEEEEeCC---CCCCCCCCeeeeecce---------eeEEEeeeeeccccccccCCCCcceeec
Q 021291           84 -------------RDGTVKCWDIE---NGGLSSNPSLTIKTNS---------YHFCKLSLVKEPYANAKQANEPKDCYER  138 (314)
Q Consensus        84 -------------~dg~v~iwd~~---~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (314)
                                   .+..|..||+.   +++...  ...+....         .......                     
T Consensus        85 ~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~--~~dL~~~~~~~~~~~g~~~~~~nD---------------------  141 (334)
T 2p9w_A           85 NAKSFNFADQSSHGASSFHSFNLPLSENSKPVW--SVNFEKVQDEFEKKAGKRPFGVVQ---------------------  141 (334)
T ss_dssp             ETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSE--EEESHHHHHHHHHHHSSCCEEEEE---------------------
T ss_pred             ccccccccccccCCCCEEEEEcCCcCCCCCEEE--EecCccccccccccccccccCCce---------------------
Confidence                         16789999998   665433  11211100         0000000                     


Q ss_pred             cCCceeeecCCCCCCceeccCCCceEEEeecCc-CeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCC
Q 021291          139 EVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL-SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSK  217 (314)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~  217 (314)
                                     ++..++|+-.+  +++.. +.|...+.... .+..+....     . ..........+. ++|+ 
T Consensus       142 ---------------vavD~~GnaYV--t~s~~~~~I~rV~pdG~-~~~~~~~~~-----~-~~~~~~G~nGIv-~~pd-  195 (334)
T 2p9w_A          142 ---------------SAQDRDGNSYV--AFALGMPAIARVSADGK-TVSTFAWES-----G-NGGQRPGYSGIT-FDPH-  195 (334)
T ss_dssp             ---------------EEECTTSCEEE--EEEESSCEEEEECTTSC-CEEEEEECC-----C-CSSSCCSCSEEE-EETT-
T ss_pred             ---------------eEECCCCCEEE--eCCCCCCeEEEEeCCCC-EEeeeeecC-----C-CcccccCcceEE-EeCC-
Confidence                           45667776443  45555 66777766533 222221100     0 000122344565 9998 


Q ss_pred             CCCceEEEEeecCCcEEEEEccCCCC-ceEeee--cC---CcceEEE-EEeCCCCe-EEEecCCCcEEEEecCC
Q 021291          218 SQGFVNVLAGYEDGSILVWDIRNPGI-PLTAMK--VH---LEPVLCL-SIDESCNG-GISGGADQKIVLYNLDH  283 (314)
Q Consensus       218 ~~g~~~l~~g~~dg~i~vwd~~~~~~-~~~~~~--~h---~~~v~~~-~~~~~~~~-l~s~s~dg~i~iw~~~~  283 (314)
                        |..+++..+ .|.|..+|++.+.. ++. +.  +.   -.....| ....+|+. |++.+..+.+.+.+-+.
T Consensus       196 --g~~Liv~~~-~g~L~~fD~~~pv~~~v~-~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~Dg  265 (334)
T 2p9w_A          196 --SNKLIAFGG-PRALTAFDVSKPYAWPEP-VKINGDFGTLSGTEKIVTVPVGNESVLVGARAPYAISFRSWDN  265 (334)
T ss_dssp             --TTEEEEESS-SSSEEEEECSSSSCCCEE-CEESSCCCCCTTEEEEEEEEETTEEEEEEEETTEEEEEECSST
T ss_pred             --CCEEEEEcC-CCeEEEEcCCCCcceeec-ccccCCcccccCcccccccccCCEEEEEEcCCCCEEEEECCCC
Confidence              553444445 99999999985322 121 21  21   1123333 33456666 56655666666655443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.07  E-value=0.17  Score=45.98  Aligned_cols=238  Identities=9%  Similarity=-0.016  Sum_probs=116.8

Q ss_pred             CCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEe-------c-----cCCcccEEEEEEcccCCCCeEEEeecC
Q 021291           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW-------V-----HSAAHGIVSVATGPSIGLNKVISQGRD   85 (314)
Q Consensus        18 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-------~-----~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (314)
                      ...|.++...++|. |..|+..+-|.++|..+++......       .     .-....|.++...+  ++ .|..|+.+
T Consensus       257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~--~g-~lWigt~~  332 (781)
T 3v9f_A          257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDS--FN-NIWIGTWG  332 (781)
T ss_dssp             CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECS--SC-CEEEEEBS
T ss_pred             CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeC--CC-CEEEEecC
Confidence            35688888888775 4456664458889987655332211       0     00114589998887  64 46677777


Q ss_pred             CeEEEEeCCCCCCCCCCeeeee-----cc---eeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCC---C-CCC
Q 021291           86 GTVKCWDIENGGLSSNPSLTIK-----TN---SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSL---C-DSK  153 (314)
Q Consensus        86 g~v~iwd~~~~~~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~  153 (314)
                      +-|..++..+.....   +...     ..   ......+........-....+.....++.....  ...+.   . ...
T Consensus       333 ~Gl~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~--~~~~~~~~~~~~~  407 (781)
T 3v9f_A          333 GGINFISNAPPTFHT---WSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRV--AIYNKENRELLSN  407 (781)
T ss_dssp             SCEEEECSSCCSCEE---EC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEE--EECC-----CCCS
T ss_pred             CeEEEeCCCCCccee---eccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCe--EEEccCCCCCCCc
Confidence            778899887654311   1000     00   001111111111111111112222222222111  11111   0 111


Q ss_pred             ----ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeec
Q 021291          154 ----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE  229 (314)
Q Consensus       154 ----~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~  229 (314)
                          +...++|. +.+  |+.++-|..+|.++++.. .+..       .  ......+.++. ..++   |.  |..|+.
T Consensus       408 ~v~~i~~d~~g~-lWi--gt~~~Gl~~~~~~~~~~~-~~~~-------~--~~~~~~v~~i~-~d~~---g~--lwigt~  468 (781)
T 3v9f_A          408 SVLCSLKDSEGN-LWF--GTYLGNISYYNTRLKKFQ-IIEL-------E--KNELLDVRVFY-EDKN---KK--IWIGTH  468 (781)
T ss_dssp             BEEEEEECTTSC-EEE--EETTEEEEEECSSSCEEE-ECCS-------T--TTCCCCEEEEE-ECTT---SE--EEEEET
T ss_pred             ceEEEEECCCCC-EEE--EeccCCEEEEcCCCCcEE-Eecc-------C--CCCCCeEEEEE-ECCC---CC--EEEEEC
Confidence                33334443 443  444467999998776532 2221       0  11123466655 5544   53  555555


Q ss_pred             CCcEEEEEccCCCCceEeeecC-----CcceEEEEEeCCCCeEEEecCCCcEEEEecCCCee
Q 021291          230 DGSILVWDIRNPGIPLTAMKVH-----LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTY  286 (314)
Q Consensus       230 dg~i~vwd~~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~  286 (314)
                       +-|..||..+ ++........     ...|.++..+++|.+.+ |+.++-|..||.++++.
T Consensus       469 -~Gl~~~~~~~-~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~  527 (781)
T 3v9f_A          469 -AGVFVIDLAS-KKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLV  527 (781)
T ss_dssp             -TEEEEEESSS-SSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEE
T ss_pred             -CceEEEeCCC-CeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeE
Confidence             5688899876 4433222211     35799999999987544 44433477788776543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.04  E-value=0.12  Score=43.88  Aligned_cols=63  Identities=10%  Similarity=-0.012  Sum_probs=41.7

Q ss_pred             EEEEeecCCcEEEEEccCCCCceEeeecC------------------------CcceEEEEEeCC-CCeEEEecCCCcEE
Q 021291          223 NVLAGYEDGSILVWDIRNPGIPLTAMKVH------------------------LEPVLCLSIDES-CNGGISGGADQKIV  277 (314)
Q Consensus       223 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~h------------------------~~~v~~~~~~~~-~~~l~s~s~dg~i~  277 (314)
                      ++++-..++.|+.++. + + .+.++-+.                        -.....|+++++ +.++++=.....|+
T Consensus       393 lyVaD~~N~rIr~i~~-~-G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIr  469 (496)
T 3kya_A          393 FYFVDRLNFCVRKVTP-E-G-IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIR  469 (496)
T ss_dssp             EEEEEGGGTEEEEECT-T-C-BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             EEEEECCCCEEEEEeC-C-C-CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEE
Confidence            6666677888999984 3 4 34444332                        023678999986 77777777788899


Q ss_pred             EEecCCCeeeE
Q 021291          278 LYNLDHSTYVL  288 (314)
Q Consensus       278 iw~~~~~~~~~  288 (314)
                      .++++....+.
T Consensus       470 ki~~~~~~~~~  480 (496)
T 3kya_A          470 TISMEQEENVA  480 (496)
T ss_dssp             EEEECCCC---
T ss_pred             EEECCCCcccc
Confidence            99988765543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.97  E-value=0.11  Score=42.13  Aligned_cols=52  Identities=12%  Similarity=0.033  Sum_probs=34.8

Q ss_pred             CcceEEEEEeCCCCeEE-EecCCCcEEEEecCCCeeeE---------eeeeeeecCC-Cceec
Q 021291          252 LEPVLCLSIDESCNGGI-SGGADQKIVLYNLDHSTYVL---------FGIGFVCDQE-GNKFG  303 (314)
Q Consensus       252 ~~~v~~~~~~~~~~~l~-s~s~dg~i~iw~~~~~~~~~---------~~~~~~~~~~-~~~~~  303 (314)
                      -..-+.++|+||++.|. +-+..+.|..|+++....+.         ..-+++.+++ |....
T Consensus       220 l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwv  282 (355)
T 3sre_A          220 FDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWV  282 (355)
T ss_dssp             ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEE
T ss_pred             CcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEE
Confidence            34568999999997664 44567899999987432221         1244667774 77665

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.96  E-value=0.11  Score=42.14  Aligned_cols=80  Identities=13%  Similarity=0.053  Sum_probs=47.6

Q ss_pred             EEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCe-EEEEEe-ccCCcccEEEEEEcccCC---CCeEEEeec--
Q 021291           12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-TVSSSW-VHSAAHGIVSVATGPSIG---LNKVISQGR--   84 (314)
Q Consensus        12 ~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~-~~~~~~~v~~~~~~~~~~---~~~l~s~~~--   84 (314)
                      ..+-.--.....++|.|+|+++++ ..+|.|++++ .+++ .+..+. ..........|+++|  +   +..|+.+..  
T Consensus        22 ~~va~~l~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~p--df~~~g~lyv~~~~~   97 (354)
T 3a9g_A           22 SEVASDLEVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHP--EFPKKSWVYLYASYF   97 (354)
T ss_dssp             EEEECSCSCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECT--TTTTSCEEEEEEEEE
T ss_pred             EEEeCCCCCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCC--CCCcCCEEEEEEecc
Confidence            333333456789999999975554 5569999997 4555 222211 011224488999999  6   445544332  


Q ss_pred             --C----CeEEEEeCCC
Q 021291           85 --D----GTVKCWDIEN   95 (314)
Q Consensus        85 --d----g~v~iwd~~~   95 (314)
                        +    ..|..|+...
T Consensus        98 ~~~~~~~~~v~r~~~~~  114 (354)
T 3a9g_A           98 AEGGHIRNRVIRGRLDG  114 (354)
T ss_dssp             CGGGCEEEEEEEEEECS
T ss_pred             CCCCCcceEEEEEEECC
Confidence              2    4566666654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.93  E-value=0.005  Score=49.50  Aligned_cols=66  Identities=17%  Similarity=0.187  Sum_probs=44.0

Q ss_pred             CEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEccc-CCCCeEEEe-ecCCeEEEEeCCCCC
Q 021291           31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS-IGLNKVISQ-GRDGTVKCWDIENGG   97 (314)
Q Consensus        31 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~l~s~-~~dg~v~iwd~~~~~   97 (314)
                      .+++.++.||.|.-.|.++|+.+.+++.... .++....-... .++..++.. +.||.|..+|..++.
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~-~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~   78 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENF-QPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGL   78 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGS-CCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCcc-CCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCc
Confidence            4788899999999999999999999876510 12322211110 022333333 689999999988773

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.75  E-value=0.41  Score=45.49  Aligned_cols=103  Identities=14%  Similarity=0.109  Sum_probs=61.4

Q ss_pred             CCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEcc
Q 021291          160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR  239 (314)
Q Consensus       160 ~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~  239 (314)
                      +.+++++.|   .+|++|++...+.+. ...       .+-.  ...+..+. ..     |. ++++|..-..|.++..+
T Consensus       895 ~g~Lla~ig---~~l~vy~l~~~~~L~-~~~-------~~~~--~i~~~~l~-~~-----~~-~I~vgD~~~Sv~~~~y~  954 (1158)
T 3ei3_A          895 NGKLLASIN---STVRLYEWTTEKELR-TEC-------NHYN--NIMALYLK-TK-----GD-FILVGDLMRSVLLLAYK  954 (1158)
T ss_dssp             TTEEEEEET---TEEEEEEECTTSCEE-EEE-------EECC--CSCEEEEE-EE-----TT-EEEEEESSBCEEEEEEE
T ss_pred             CCEEEEEcC---CEEEEEECCCCceEE-EEe-------eccc--cEEEEEEe-cc-----CC-EEEEEEhhheEEEEEEE
Confidence            345665333   789999998665443 110       1100  11122333 22     33 78899888888887665


Q ss_pred             CCCCceEeee--cCCcceEEEEEeCCCCeEEEecCCCcEEEEecCC
Q 021291          240 NPGIPLTAMK--VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH  283 (314)
Q Consensus       240 ~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~  283 (314)
                      .....+..+.  .+..+++++.|-.+. .++.+..+|.+.+...+.
T Consensus       955 ~~~~~L~~~a~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          955 PMEGNFEEIARDFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             TTTTEEEEEEECCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECT
T ss_pred             cCCCeEEEEEeecccccEEEEEEEccC-cEEEEcCCCcEEEEecCC
Confidence            4233333333  345678899884443 577788999999997765

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.43  E-value=0.13  Score=42.46  Aligned_cols=116  Identities=11%  Similarity=0.109  Sum_probs=72.5

Q ss_pred             ceeccCCCceEEEeecCcCeEEEEecCCCce------------eeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCc
Q 021291          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAER------------CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGF  221 (314)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~------------~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~  221 (314)
                      +..+|+|+.+. +.|.  ..|.|-.+..+..            .+.+...      .........+..+. |+|-+..+.
T Consensus        71 lvlSpsG~lLA-l~g~--~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~------~~~~~~~s~I~qVl-WHPl~~~ds  140 (452)
T 3pbp_A           71 VISSTSGDLLC-LFND--NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSID------EEEVGPKSSIKKVL-FHPKSYRDS  140 (452)
T ss_dssp             EEECTTSSEEE-EECS--SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGG------GCC--CCCCEEEEE-ECTTBGGGC
T ss_pred             EEECCCCCEEE-EecC--CeEEEEEecCccccCcccccccccceeEEEcC------CcccCCCCceeEEE-eccccCCCC
Confidence            56889997554 4564  6899888773321            1122210      00011245688887 999876555


Q ss_pred             eEEEEeecCCcEEEEEccC-CCCceEeee---------cCCcceEEEEEeCCCCeEEE--ecCCCcEEEEec
Q 021291          222 VNVLAGYEDGSILVWDIRN-PGIPLTAMK---------VHLEPVLCLSIDESCNGGIS--GGADQKIVLYNL  281 (314)
Q Consensus       222 ~~l~~g~~dg~i~vwd~~~-~~~~~~~~~---------~h~~~v~~~~~~~~~~~l~s--~s~dg~i~iw~~  281 (314)
                       .|++-..|+.|++||+.. ...|. .++         .....|.+++|.+++..|..  .+..|.|+-...
T Consensus       141 -~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlcP  210 (452)
T 3pbp_A          141 -CIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFYP  210 (452)
T ss_dssp             -EEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEESS
T ss_pred             -eEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEECC
Confidence             899999999999999985 22333 232         22357889999887766655  446677665443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.40  E-value=0.28  Score=39.47  Aligned_cols=109  Identities=11%  Similarity=0.201  Sum_probs=65.2

Q ss_pred             eEEEeecC--cCeEEEEec--CCCceeeeecccccCCCCCcC--CCCCceeeeEEEe-cCCCCCCceEEEEeecCCcEEE
Q 021291          163 YMAVAGEQ--LSEVEIWDL--NTAERCTRLHQNSCGGSPNFS--SKGRGMCMAVQAY-LPSKSQGFVNVLAGYEDGSILV  235 (314)
Q Consensus       163 ~~~~~g~~--d~~i~vwd~--~~~~~~~~~~~~~~~~~~~h~--~~~~~~~~~~~~~-~p~~~~g~~~l~~g~~dg~i~v  235 (314)
                      +++++...  +++|.+|++  .+++ +..+...      .++  .. ...++.++.| +|.  .+..++++...+|.+..
T Consensus        88 la~as~R~~~~n~l~vf~iDp~~~~-l~~i~~~------~~pv~t~-~~~pyGlcly~~~~--~g~~yafV~~k~G~~~q  157 (355)
T 3amr_A           88 IAAASNRSEGKNTIEIYAIDGKNGT-LQSMTDP------DHPIATA-INEVYGFTLYHSQK--TGKYYAMVTGKEGEFEQ  157 (355)
T ss_dssp             EEEEEECSTTCCEEEEEEECTTTCC-EEECSCT------TSCEECC-CSSCCCEEEEECTT--TCCEEEEEECSSSEEEE
T ss_pred             EEEEeCCCCCCCeEEEEEECCCCCc-eeecccc------ccCcCCC-CCCeeEEEEEecCC--CCcEEEEEECCCCeEEE
Confidence            34445554  588999966  3433 4433210      000  00 0233334313 453  25557888888999999


Q ss_pred             EEccCC------CCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecC
Q 021291          236 WDIRNP------GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD  282 (314)
Q Consensus       236 wd~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~  282 (314)
                      |++...      .+.++++.. ...+..+..++....|..+-.|.-|..++.+
T Consensus       158 ~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~  209 (355)
T 3amr_A          158 YELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAE  209 (355)
T ss_dssp             EEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECS
T ss_pred             EEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEEecccceEEEEeCC
Confidence            998421      345666664 4578889999888888888888666555544

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.30  E-value=0.34  Score=40.05  Aligned_cols=76  Identities=14%  Similarity=0.105  Sum_probs=56.0

Q ss_pred             ceeEEEEccCCCEEEEecCCCeEEEEeCCCCe------------EEEEEeccC----CcccEEEEEEcccC-CCCeEEEe
Q 021291           20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHR------------TVSSSWVHS----AAHGIVSVATGPSI-GLNKVISQ   82 (314)
Q Consensus        20 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~------------~~~~~~~~~----~~~~v~~~~~~~~~-~~~~l~s~   82 (314)
                      .|..+..+|+|++||..+.. .|.|-.+..+.            ..+.+....    ...+|..+.|+|-. .+..|++-
T Consensus        67 ~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL  145 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL  145 (452)
T ss_dssp             TTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred             ceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence            68889999999999988665 78898887321            123333221    12569999999931 24589999


Q ss_pred             ecCCeEEEEeCCCC
Q 021291           83 GRDGTVKCWDIENG   96 (314)
Q Consensus        83 ~~dg~v~iwd~~~~   96 (314)
                      ..|++|++||+...
T Consensus       146 tsD~~Ir~yDl~~s  159 (452)
T 3pbp_A          146 KEDDTITMFDILNS  159 (452)
T ss_dssp             ETTSCEEEEETTCT
T ss_pred             ecCCEEEEEEcccC
Confidence            99999999999873

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.15  E-value=0.35  Score=38.01  Aligned_cols=65  Identities=12%  Similarity=0.150  Sum_probs=35.8

Q ss_pred             CCCEEEEec-CC-----CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC-----CeEEEEeCCCCC
Q 021291           29 TKPILFAGT-TG-----GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD-----GTVKCWDIENGG   97 (314)
Q Consensus        29 ~~~~l~s~~-~d-----g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----g~v~iwd~~~~~   97 (314)
                      ++.+++.|+ .+     ..+.+||..+.+....-........- +++. .  ++..++.|+.+     ..+.+||+.+.+
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~   89 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYV-ASVS-L--HDRIYVIGGYDGRSRLSSVECLDYTADE   89 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-E--TTEEEEECCBCSSCBCCCEEEEETTCCT
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccc-cEEE-E--CCEEEEEcCCCCCccCceEEEEECCCCC
Confidence            445666676 32     36889998877543321111110111 2222 2  44677777755     358888888765

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.12  E-value=0.36  Score=37.95  Aligned_cols=65  Identities=14%  Similarity=0.173  Sum_probs=35.4

Q ss_pred             CCCEEEEecCC-----CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC-----eEEEEeCCCCC
Q 021291           29 TKPILFAGTTG-----GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG-----TVKCWDIENGG   97 (314)
Q Consensus        29 ~~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-----~v~iwd~~~~~   97 (314)
                      ++.+++.|+.+     ..+.+||..+.+....-........-..+.+    ++..++.|+.++     .+.+||+.+.+
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~  135 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL----NGLLYAVGGFDGSTGLSSVEAYNIKSNE  135 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE----TTEEEEEEEECSSCEEEEEEEEETTTTE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE----CCEEEEEcCCCCCccCceEEEEeCCCCe
Confidence            56667777754     3588899887654432221111111122222    446777777553     47778877654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=95.91  E-value=0.45  Score=37.31  Aligned_cols=60  Identities=18%  Similarity=0.104  Sum_probs=33.4

Q ss_pred             EEEEeecC-----CcEEEEEccCCCCceEeee---cCCcceEEEEEeCCCCeEEEecCC-----CcEEEEecCCCee
Q 021291          223 NVLAGYED-----GSILVWDIRNPGIPLTAMK---VHLEPVLCLSIDESCNGGISGGAD-----QKIVLYNLDHSTY  286 (314)
Q Consensus       223 ~l~~g~~d-----g~i~vwd~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~s~d-----g~i~iw~~~~~~~  286 (314)
                      +++.|+.+     ..+.+||+.+ .+ -..+.   ........+.+  +++.++.|+.+     ..+.+||+++.+-
T Consensus       209 i~v~GG~~~~~~~~~v~~yd~~~-~~-W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  281 (301)
T 2vpj_A          209 IYVVGGFDGTAHLSSVEAYNIRT-DS-WTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDSW  281 (301)
T ss_dssp             EEEECCBCSSSBCCCEEEEETTT-TE-EEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTEE
T ss_pred             EEEEeCCCCCcccceEEEEeCCC-Cc-EEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCeE
Confidence            66677654     4689999886 32 12221   11111122222  55677777765     3578888887653

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=95.83  E-value=0.5  Score=37.19  Aligned_cols=65  Identities=12%  Similarity=0.187  Sum_probs=37.4

Q ss_pred             CCCEEEEecCC----CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC------CeEEEEeCCCCC
Q 021291           29 TKPILFAGTTG----GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD------GTVKCWDIENGG   97 (314)
Q Consensus        29 ~~~~l~s~~~d----g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~v~iwd~~~~~   97 (314)
                      ++.+++.|+.+    ..+.+||..+.+....-........-..+.+    ++..++.|+.+      ..+.+||+.+.+
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~d~~~~~  129 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA----EGKIYTSGGSEVGNSALYLFECYDTRTES  129 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE----TTEEEEECCBBTTBSCCCCEEEEETTTTE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE----CCEEEEECCCCCCCcEeeeEEEEeCCCCc
Confidence            56677777754    6788999888765433222211111222222    44677777765      457888887764

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=95.60  E-value=0.61  Score=36.58  Aligned_cols=64  Identities=16%  Similarity=0.114  Sum_probs=33.2

Q ss_pred             CCEEEEecCC----CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC-----eEEEEeCCCCC
Q 021291           30 KPILFAGTTG----GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG-----TVKCWDIENGG   97 (314)
Q Consensus        30 ~~~l~s~~~d----g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-----~v~iwd~~~~~   97 (314)
                      +.+++.|+.+    ..+.+||..+.+....-....... -.+++. -  ++..++.|+.++     .+.+||..+.+
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~-~~~~~~-~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~   88 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRC-RAGMVY-M--AGLVFAVGGFNGSLRVRTVDSYDPVKDQ   88 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCB-SCEEEE-E--TTEEEEESCBCSSSBCCCEEEEETTTTE
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccc-cceEEE-E--CCEEEEEeCcCCCccccceEEECCCCCc
Confidence            3455566643    358899988775433211111101 112222 2  446777777543     47777877654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=95.42  E-value=0.78  Score=36.63  Aligned_cols=66  Identities=14%  Similarity=0.092  Sum_probs=39.2

Q ss_pred             eeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeee---cCCcceEEEEEeCCCCeEEEecCCCcEEEEe
Q 021291          206 MCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK---VHLEPVLCLSIDESCNGGISGGADQKIVLYN  280 (314)
Q Consensus       206 ~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~  280 (314)
                      .+.++. +.|+   +. +++++ .+|.| ++..+. ++--..+.   .....+.++.|.+++. ++.++.+|.|.-++
T Consensus       251 ~~~~v~-~~~~---~~-~~~~g-~~g~i-~~S~Dg-G~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          251 GFLDLA-YRTP---NE-VWLAG-GAGAL-LCSQDG-GQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV  319 (327)
T ss_dssp             CEEEEE-ESSS---SC-EEEEE-STTCE-EEESST-TSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred             ceEEEE-ecCC---CE-EEEEe-CCCeE-EEeCCC-CcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence            356676 7765   43 45544 46766 345443 44433333   2345678898976555 56667889776665

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=95.39  E-value=0.99  Score=37.56  Aligned_cols=240  Identities=11%  Similarity=0.121  Sum_probs=132.9

Q ss_pred             EEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCC
Q 021291           23 DVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNP  102 (314)
Q Consensus        23 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  102 (314)
                      +.-.+|..+.+|-=. ..++.|+|+++...+..+...+   .|.-=.|-.  + +.|+-.+ +..|.-|+++...... .
T Consensus        70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e---~VvfWkWis--~-~~l~lVT-~taVyHWsi~~~s~P~-k  140 (494)
T 1bpo_A           70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWKWIS--L-NTVALVT-DNAVYHWSMEGESQPV-K  140 (494)
T ss_dssp             EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS---CCCEEEEEE--T-TEEEEEC-SSEEEEEESSSSCCCE-E
T ss_pred             eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC---CceEEEecC--C-CeEEEEc-CCeeEEecccCCCCch-h
Confidence            345677777776654 5789999999999988877654   366667765  4 5666555 4589999997632111 0


Q ss_pred             eeeeecceeeEEEeeeeecc----ccccc------cCCCCcceeeccCCceeeecCCCCCC--ceeccCCC----ceEEE
Q 021291          103 SLTIKTNSYHFCKLSLVKEP----YANAK------QANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGP----KYMAV  166 (314)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~----~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----~~~~~  166 (314)
                      ++..+..-.....++....+    .....      ...+.+..+..  .+.....+.+|..  ..+-.+|+    .+++.
T Consensus       141 vFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~--er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~f  218 (494)
T 1bpo_A          141 MFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSV--DRKVSQPIEGHAASFAQFKMEGNAEESTLFCF  218 (494)
T ss_dssp             EEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEES--TTCCEEEECCSEEEEEEEECTTCSSEEEEEEE
T ss_pred             heecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeec--cccccchheeeeeeeEEEecCCCCCCceEEEE
Confidence            22222111111111111110    00000      01122222222  2233444555555  33333332    23332


Q ss_pred             eec--CcCeEEEEecCCC---ce-----eeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEE
Q 021291          167 AGE--QLSEVEIWDLNTA---ER-----CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW  236 (314)
Q Consensus       167 ~g~--~d~~i~vwd~~~~---~~-----~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vw  236 (314)
                      +..  ..+++.|-++...   ..     ...+.        --++.......++. .++..  |  .++.-+.-|.|++|
T Consensus       219 a~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~--------fppe~~~DFPvamq-vs~ky--g--viyviTK~G~i~ly  285 (494)
T 1bpo_A          219 AVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVF--------FPPEAQNDFPVAMQ-ISEKH--D--VVFLITKYGYIHLY  285 (494)
T ss_dssp             EECSTTCCEEEEEECSCCCTTCCCCCCEEEECC--------CCTTSTTCCEEEEE-EETTT--T--EEEEEETTSEEEEE
T ss_pred             EEecCCCcEEEEEEcCCCccCCCCccceeeeee--------CCcccccCceeEEE-ecccC--C--EEEEEecCceEEEE
Confidence            211  1267888887432   11     11111        01122345666776 77652  3  67777888999999


Q ss_pred             EccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeee
Q 021291          237 DIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYV  287 (314)
Q Consensus       237 d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~  287 (314)
                      |+.+ +.++..-.-..++|..-+.+....-++.....|.|.--.++....+
T Consensus       286 DleT-gt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~iv  335 (494)
T 1bpo_A          286 DLET-GTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII  335 (494)
T ss_dssp             ETTT-CCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTHH
T ss_pred             eccc-ceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccccch
Confidence            9999 8888877777788877777655555666678888887777766544

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=94.96  E-value=1.8  Score=38.15  Aligned_cols=202  Identities=6%  Similarity=-0.097  Sum_probs=107.7

Q ss_pred             CceeEEEEccC-CCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCC-eEEEeecCCeEEEEeCCCC
Q 021291           19 ASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLN-KVISQGRDGTVKCWDIENG   96 (314)
Q Consensus        19 ~~v~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~   96 (314)
                      ..+.+++|.+. +.++++-...+.|+.++.+.......+...-  .....+++.+  .+. +.++-+..+.|.+.++...
T Consensus       349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~--~~p~GlAvD~--~~~~lY~tD~~~~~I~v~~~~G~  424 (619)
T 3s94_A          349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQI--AHPDGIAVDW--VARNLYWTDTGTDRIEVTRLNGT  424 (619)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC--SCCCEEEEET--TTTEEEEEETTTTEEEEEETTSC
T ss_pred             CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCC--CCcCceEEec--ccCcEEEEeCCCCcEEEEeCCCC
Confidence            34678899884 5455555567889999877543332332221  2366888876  444 4445455778988888754


Q ss_pred             CCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEE
Q 021291           97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI  176 (314)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v  176 (314)
                      .. .  .+.........                                       .+++.|....++.+--+..+.|..
T Consensus       425 ~~-~--~l~~~~l~~P~---------------------------------------~iavdp~~G~ly~tD~g~~~~I~r  462 (619)
T 3s94_A          425 MR-K--ILISEDLEEPR---------------------------------------AIVLDPMVGYMYWTDWGEIPKIER  462 (619)
T ss_dssp             SC-E--EEECTTCCSEE---------------------------------------EEEEETTTTEEEEEECSSSCEEEE
T ss_pred             eE-E--EEEECCCCCee---------------------------------------eEEEEcCCCcEEEecCCCCCEEEE
Confidence            21 1  11000000000                                       056777655555432222356776


Q ss_pred             EecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEee-ecCCcce
Q 021291          177 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM-KVHLEPV  255 (314)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~-~~h~~~v  255 (314)
                      .++.... ...+..       .    .-.....++ +++++  ++ +.++-...+.|..++++.  .....+ ...-...
T Consensus       463 ~~~dG~~-~~~l~~-------~----~l~~P~Gla-lD~~~--~~-LY~aD~~~~~I~~~~~dG--~~~~~~~~~~l~~P  524 (619)
T 3s94_A          463 AALDGSD-RVVLVN-------T----SLGWPNGLA-LDYDE--GK-IYWGDAKTDKIEVMNTDG--TGRRVLVEDKIPHI  524 (619)
T ss_dssp             EETTSCS-CEEEEC-------S----SCSCEEEEE-EETTT--TE-EEEEETTTTEEEEEESSS--CCCEEEEECCCCSS
T ss_pred             EccCCCc-cEEEEe-------C----CCCCCeeeE-EcccC--CE-EEEEECCCCEEEEEecCC--CceEEEeccCCCCc
Confidence            6665322 222221       1    122455666 88752  33 555556667899999874  222222 2222233


Q ss_pred             EEEEEeCCCCeEEEecCCCcEEEEecCCCe
Q 021291          256 LCLSIDESCNGGISGGADQKIVLYNLDHST  285 (314)
Q Consensus       256 ~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~  285 (314)
                      .+|+...+ ..+++-...+.|...+..++.
T Consensus       525 ~glav~~~-~ly~tD~~~~~I~~~~k~~g~  553 (619)
T 3s94_A          525 FGFTLLGD-YVYWTDWQRRSIERVHKRSAE  553 (619)
T ss_dssp             CCEEEETT-EEEEECTTSSCEEEEESSSCC
T ss_pred             EEEEEECC-EEEEeecCCCeEEEEEcCCCc
Confidence            45666655 444555566778777777763

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=94.83  E-value=1.5  Score=36.55  Aligned_cols=223  Identities=11%  Similarity=0.083  Sum_probs=119.8

Q ss_pred             cCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEe
Q 021291           37 TTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKL  116 (314)
Q Consensus        37 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  116 (314)
                      +.+.+|.|-|+.++..+.+-...     --+.-.+|  ..+.++.=. ..++.|+|+++....+  .+.+... .....+
T Consensus        45 ~~~~~vvIiDl~~~~~~~rrpi~-----AdsAIMnP--~~~iiALra-g~~lQiFnle~K~klk--s~~~~e~-VvfWkW  113 (494)
T 1bpo_A           45 GEQAQVVIIDMNDPSNPIRRPIS-----ADSAIMNP--ASKVIALKA-GKTLQIFNIEMKSKMK--AHTMTDD-VTFWKW  113 (494)
T ss_dssp             TTCCEEEEEETTSTTSCEEEECC-----CSEEEECS--SSSCEEEEE-TTEEEEEETTTTEEEE--EEECSSC-CCEEEE
T ss_pred             CCCCeEEEEECCCCCcceecccc-----cceeeeCC--CCcEEEEec-CCeEEEEchHHhhhhc--ceecCCC-ceEEEe
Confidence            34448999998876544322211     12444677  656665544 6799999999876443  2222221 111111


Q ss_pred             eeeeccccccccCCCCcceeeccCCceeeecCCCCCC--------ceeccCCCceEEEeec-----CcCeEEEEecCCCc
Q 021291          117 SLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--------DDVPAEGPKYMAVAGE-----QLSEVEIWDLNTAE  183 (314)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~g~-----~d~~i~vwd~~~~~  183 (314)
                         -++.............|.+.....+...+..|..        ...+++.+-++++.-+     -.|.+.+|..+.+ 
T Consensus       114 ---is~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-  189 (494)
T 1bpo_A          114 ---ISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-  189 (494)
T ss_dssp             ---EETTEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-
T ss_pred             ---cCCCeEEEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-
Confidence               1222333444555666666554444444444333        3345666555443211     2467889987643 


Q ss_pred             eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCC-ceEEEEeec---CCcEEEEEccCC--CCc-e--Eeee-----
Q 021291          184 RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQG-FVNVLAGYE---DGSILVWDIRNP--GIP-L--TAMK-----  249 (314)
Q Consensus       184 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g-~~~l~~g~~---dg~i~vwd~~~~--~~~-~--~~~~-----  249 (314)
                      ..+.+.        ||..    ...   .+..++... ..+++.+..   .+.++|.++..+  +.+ .  ....     
T Consensus       190 ~sQ~ie--------Ghaa----~F~---~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fpp  254 (494)
T 1bpo_A          190 VSQPIE--------GHAA----SFA---QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP  254 (494)
T ss_dssp             CEEEEC--------CSEE----EEE---EEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCT
T ss_pred             ccchhe--------eeee----eeE---EEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCc
Confidence            334444        5521    111   132221111 113333333   278999998653  111 1  1111     


Q ss_pred             -cCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291          250 -VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF  289 (314)
Q Consensus       250 -~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~  289 (314)
                       .-.+--.++..++....+..-..-|.|++||++++..++.
T Consensus       255 e~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~  295 (494)
T 1bpo_A          255 EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM  295 (494)
T ss_dssp             TSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             ccccCceeEEEecccCCEEEEEecCceEEEEecccceeeee
Confidence             1233456677788777888888999999999999999986

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=94.72  E-value=1.2  Score=35.05  Aligned_cols=65  Identities=9%  Similarity=0.069  Sum_probs=34.7

Q ss_pred             CCCEEEEecC----C-----CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC-----CeEEEEeCC
Q 021291           29 TKPILFAGTT----G-----GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD-----GTVKCWDIE   94 (314)
Q Consensus        29 ~~~~l~s~~~----d-----g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----g~v~iwd~~   94 (314)
                      ++.+++.|+.    +     ..+.+||..+.+....-........-..+.+    ++..++.|+.+     ..+.+||+.
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~  145 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI----DGHIYAVGGSHGCIHHNSVERYEPE  145 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE----TTEEEEECCEETTEECCCEEEEETT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE----CCEEEEEcCCCCCcccccEEEECCC
Confidence            5666777775    2     3588899887654332111111111122222    44666666643     357778877


Q ss_pred             CCC
Q 021291           95 NGG   97 (314)
Q Consensus        95 ~~~   97 (314)
                      +.+
T Consensus       146 ~~~  148 (308)
T 1zgk_A          146 RDE  148 (308)
T ss_dssp             TTE
T ss_pred             CCe
Confidence            654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=94.63  E-value=2.2  Score=37.64  Aligned_cols=206  Identities=9%  Similarity=-0.032  Sum_probs=113.3

Q ss_pred             CceeEEEEccCCC-EEEEecCCCeEEEEeCCCCeEEEEEec----cCCcccEEEEEEcccCCCCeE-EEeecCCeEEEEe
Q 021291           19 ASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWV----HSAAHGIVSVATGPSIGLNKV-ISQGRDGTVKCWD   92 (314)
Q Consensus        19 ~~v~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~v~iwd   92 (314)
                      ..+.+++|.+... ++.+=...+.|+.++.+.......+..    ......+..|++..  .++.| ++-+..+.|.+.+
T Consensus       340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~--~~~nLY~td~~~~~I~v~~  417 (628)
T 4a0p_A          340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDI--YSRYIYWTCEATNVINVTR  417 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEET--TTTEEEEEETTTTEEEEEE
T ss_pred             CCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeec--cCCeEEEEcCCCCEEEEEE
Confidence            4578899998544 445545577898888764332222322    01113478999987  65544 4656678888888


Q ss_pred             CCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcC
Q 021291           93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS  172 (314)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~  172 (314)
                      +... ...  .+.........                                       .+++.|....++.+-.....
T Consensus       418 ~~G~-~~~--~l~~~~l~~Pr---------------------------------------~iavdp~~g~ly~tD~g~~~  455 (628)
T 4a0p_A          418 LDGR-SVG--VVLKGEQDRPR---------------------------------------AVVVNPEKGYMYFTNLQERS  455 (628)
T ss_dssp             TTSC-EEE--EEEECTTCCEE---------------------------------------EEEEETTTTEEEEEEEETTE
T ss_pred             CCCC-eEE--EEEeCCCCcee---------------------------------------eEEEecCCCeEEEeecCCCC
Confidence            8643 111  10000000000                                       05677755555554333222


Q ss_pred             -eEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeee-c
Q 021291          173 -EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK-V  250 (314)
Q Consensus       173 -~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~-~  250 (314)
                       .|...++. +.....+..       .    .-.....++ +++..  ++ +.++-...+.|...|++  +.....+. .
T Consensus       456 ~~I~r~~~d-G~~~~~l~~-------~----~l~~P~gla-~D~~~--~~-LYw~D~~~~~I~~~~~d--G~~r~~~~~~  517 (628)
T 4a0p_A          456 PKIERAALD-GTEREVLFF-------S----GLSKPIALA-LDSRL--GK-LFWADSDLRRIESSDLS--GANRIVLEDS  517 (628)
T ss_dssp             EEEEEEETT-SCSCEEEEC-------S----SCSCEEEEE-EETTT--TE-EEEEETTTTEEEEEETT--SCSCEEEECS
T ss_pred             CeEEEEeCC-CCCcEEEEe-------c----cCCCccEEE-EeCCC--CE-EEEEeCCCCEEEEEeCC--CCceEEEEcC
Confidence             56666665 332333321       0    122346666 87762  22 55555667889999986  33344443 3


Q ss_pred             CCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeee
Q 021291          251 HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYV  287 (314)
Q Consensus       251 h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~  287 (314)
                      ......+|+... +..+++=...+.|...|..+++..
T Consensus       518 ~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~  553 (628)
T 4a0p_A          518 NILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGR  553 (628)
T ss_dssp             SCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCC
T ss_pred             CCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCc
Confidence            334567888876 455566666778888888766543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=94.56  E-value=1.3  Score=34.81  Aligned_cols=65  Identities=15%  Similarity=0.169  Sum_probs=34.9

Q ss_pred             CCCEEEEecCC----CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeec----C-----CeEEEEeCCC
Q 021291           29 TKPILFAGTTG----GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR----D-----GTVKCWDIEN   95 (314)
Q Consensus        29 ~~~~l~s~~~d----g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~----d-----g~v~iwd~~~   95 (314)
                      ++.+++.|+.+    ..+.+||..+.+....-........- +++. -  ++..++.|+.    +     ..+.+||+.+
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~   99 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCV-V--GGLLYAVGGRNNSPDGNTDSSALDCYNPMT   99 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-E--TTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEE-E--CCEEEEECCCcCCCCCCeecceEEEECCCC
Confidence            56677777642    36889998877644321111110111 2222 2  4466667665    2     3577888776


Q ss_pred             CC
Q 021291           96 GG   97 (314)
Q Consensus        96 ~~   97 (314)
                      .+
T Consensus       100 ~~  101 (308)
T 1zgk_A          100 NQ  101 (308)
T ss_dssp             TE
T ss_pred             Ce
Confidence            64

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=94.23  E-value=1.6  Score=34.44  Aligned_cols=67  Identities=13%  Similarity=0.198  Sum_probs=34.6

Q ss_pred             ccCCCEEEEecC----C-------CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC--------Ce
Q 021291           27 HQTKPILFAGTT----G-------GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD--------GT   87 (314)
Q Consensus        27 ~~~~~~l~s~~~----d-------g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d--------g~   87 (314)
                      ..++.+++.|+.    +       ..+.+||..+.+....-..... ..-.+++..   ++..++.|+.+        ..
T Consensus        43 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~  118 (315)
T 4asc_A           43 TKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSP-RCLFGLGEA---LNSIYVVGGREIKDGERCLDS  118 (315)
T ss_dssp             CTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSC-EESCEEEEE---TTEEEEECCEESSTTCCBCCC
T ss_pred             EECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcc-hhceeEEEE---CCEEEEEeCCcCCCCCcccce
Confidence            346777777773    1       1277889887764322111111 001122222   34666666642        35


Q ss_pred             EEEEeCCCCC
Q 021291           88 VKCWDIENGG   97 (314)
Q Consensus        88 v~iwd~~~~~   97 (314)
                      +.+||+.+.+
T Consensus       119 ~~~~d~~~~~  128 (315)
T 4asc_A          119 VMCYDRLSFK  128 (315)
T ss_dssp             EEEEETTTTE
T ss_pred             EEEECCCCCc
Confidence            7788887654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=94.23  E-value=1.8  Score=35.00  Aligned_cols=61  Identities=23%  Similarity=0.336  Sum_probs=36.9

Q ss_pred             ceEEecCCCCceeEEEEccCCC-EEEEecCCCeEEEEeCCCCeEEEEEec-----cCCcccEEEEEEcc
Q 021291           10 PVAVLRGHRASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWV-----HSAAHGIVSVATGP   72 (314)
Q Consensus        10 ~~~~l~~h~~~v~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~-----~~~~~~v~~~~~~~   72 (314)
                      .+..+-..-.....|+|.|+|+ +++ +...|.|++++.. ++....+..     .........|+++|
T Consensus         9 ~~~~va~~l~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~p   75 (353)
T 2g8s_A            9 NVEVLQDKLDHPWALAFLPDNHGMLI-TLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAP   75 (353)
T ss_dssp             EEEEEEEEESSEEEEEECSTTCCEEE-EETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECT
T ss_pred             EEEEEECCCCCcEEEEEcCCCCEEEE-EeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECC
Confidence            3344433345678999999998 555 4567999999853 432211111     11123478999998

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=93.45  E-value=2.5  Score=34.10  Aligned_cols=28  Identities=18%  Similarity=0.293  Sum_probs=22.0

Q ss_pred             EEEEEEcccCCCCeEEEeecCCeEEEEeCC
Q 021291           65 IVSVATGPSIGLNKVISQGRDGTVKCWDIE   94 (314)
Q Consensus        65 v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~   94 (314)
                      ...|+|.|  +++.|+.+...|.|++++..
T Consensus        20 P~~i~~~p--dG~~l~V~e~~G~i~~~~~~   47 (353)
T 2g8s_A           20 PWALAFLP--DNHGMLITLRGGELRHWQAG   47 (353)
T ss_dssp             EEEEEECS--TTCCEEEEETTTEEEEEETT
T ss_pred             cEEEEEcC--CCCEEEEEeCCceEEEEeCC
Confidence            68999999  98735555678999999853

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=93.36  E-value=2.3  Score=33.31  Aligned_cols=62  Identities=8%  Similarity=0.017  Sum_probs=33.9

Q ss_pred             EEEEecC--CCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC----CeEEEEeCCCCC
Q 021291           32 ILFAGTT--GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD----GTVKCWDIENGG   97 (314)
Q Consensus        32 ~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~v~iwd~~~~~   97 (314)
                      +++.|+.  ...+.+||..+.+....-........-..+.+    ++..++.|+.+    ..+.+||+.+.+
T Consensus        14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~d~~~~~   81 (306)
T 3ii7_A           14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW----DNVVYILGGSQLFPIKRMDCYNVVKDS   81 (306)
T ss_dssp             EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE----TTEEEEECCBSSSBCCEEEEEETTTTE
T ss_pred             EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE----CCEEEEEeCCCCCCcceEEEEeCCCCe
Confidence            4555654  35789999888764432111111111122222    44677777754    567888887764

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=93.19  E-value=3.4  Score=34.77  Aligned_cols=30  Identities=17%  Similarity=0.212  Sum_probs=21.6

Q ss_pred             EEEEEEcccCCCCeEEEeecCCeEEEEeCCCC
Q 021291           65 IVSVATGPSIGLNKVISQGRDGTVKCWDIENG   96 (314)
Q Consensus        65 v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~   96 (314)
                      .+.|+|.|  +++++++-...+.|.+++..++
T Consensus        29 P~~~a~~p--dG~l~V~e~~gg~I~~~~~~~g   58 (454)
T 1cru_A           29 PHALLWGP--DNQIWLTERATGKILRVNPESG   58 (454)
T ss_dssp             EEEEEECT--TSCEEEEETTTCEEEEECTTTC
T ss_pred             ceEEEEcC--CCcEEEEEcCCCEEEEEECCCC
Confidence            68999999  9876666443357888876544

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=93.06  E-value=3  Score=33.77  Aligned_cols=71  Identities=15%  Similarity=0.155  Sum_probs=44.5

Q ss_pred             eeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCc--eEeeecCCcceEEEEEeC-CCCeEEEecCC-CcEEEEec
Q 021291          206 MCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP--LTAMKVHLEPVLCLSIDE-SCNGGISGGAD-QKIVLYNL  281 (314)
Q Consensus       206 ~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~--~~~~~~h~~~v~~~~~~~-~~~~l~s~s~d-g~i~iw~~  281 (314)
                      ....++ |+||   ++.++++-+..+.|+.|+++..+..  ...+ ......-.+++++ +|.+.+++..+ +.|..|+.
T Consensus       222 ~pNGia-~spD---g~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P  296 (355)
T 3sre_A          222 FANGIN-ISPD---GKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDA  296 (355)
T ss_dssp             SEEEEE-ECTT---SSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCT
T ss_pred             ccCcce-ECCC---CCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCCceEEEEECC
Confidence            456666 9998   5535666667889999998743332  1223 2245667899998 59877666444 23444443

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=92.88  E-value=2.8  Score=33.04  Aligned_cols=67  Identities=18%  Similarity=0.199  Sum_probs=34.5

Q ss_pred             ccCCCEEEEecC----CC-------eEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC-------CeE
Q 021291           27 HQTKPILFAGTT----GG-------ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD-------GTV   88 (314)
Q Consensus        27 ~~~~~~l~s~~~----dg-------~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-------g~v   88 (314)
                      ..++.+++.|+.    ++       .+.+||..+.+....-..... ..-.+++..   ++..++.|+.+       ..+
T Consensus        54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~  129 (318)
T 2woz_A           54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSA-RCLFGLGEV---DDKIYVVAGKDLQTEASLDSV  129 (318)
T ss_dssp             CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSC-BCSCEEEEE---TTEEEEEEEEBTTTCCEEEEE
T ss_pred             EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcc-ccccceEEE---CCEEEEEcCccCCCCcccceE
Confidence            346777777773    12       277888877654432111111 111122222   34666777654       247


Q ss_pred             EEEeCCCCC
Q 021291           89 KCWDIENGG   97 (314)
Q Consensus        89 ~iwd~~~~~   97 (314)
                      .+||+.+.+
T Consensus       130 ~~yd~~~~~  138 (318)
T 2woz_A          130 LCYDPVAAK  138 (318)
T ss_dssp             EEEETTTTE
T ss_pred             EEEeCCCCC
Confidence            778887664

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=92.80  E-value=3.1  Score=33.38  Aligned_cols=56  Identities=13%  Similarity=-0.037  Sum_probs=26.9

Q ss_pred             cEEEEEccCCC-CceEeeecCCcceEEEEEeCCCCeEEEecCCC------cEEEEecCCCeeeEe
Q 021291          232 SILVWDIRNPG-IPLTAMKVHLEPVLCLSIDESCNGGISGGADQ------KIVLYNLDHSTYVLF  289 (314)
Q Consensus       232 ~i~vwd~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg------~i~iw~~~~~~~~~~  289 (314)
                      .+.+||+.+.. ..+..+......-.+  ..-+++.++.|+.++      .|.++++++++.+..
T Consensus       286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~--~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~  348 (357)
T 2uvk_A          286 STDIHLWHNGKWDKSGELSQGRAYGVS--LPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQ  348 (357)
T ss_dssp             CCEEEECC---CEEEEECSSCCBSSEE--EEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred             eEEEEecCCCceeeCCCCCCCccccee--EEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence            57789987521 122222211111122  223556777777543      355568887776554

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=92.54  E-value=3.1  Score=32.72  Aligned_cols=62  Identities=10%  Similarity=0.036  Sum_probs=33.4

Q ss_pred             EEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeec----C-------CeEEEEeCCCCCC
Q 021291           32 ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR----D-------GTVKCWDIENGGL   98 (314)
Q Consensus        32 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~----d-------g~v~iwd~~~~~~   98 (314)
                      +++.|+  ..+.+||..+++... .................  ++..++.|+.    +       ..+..||..+.+.
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W   79 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTK--ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW   79 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEECT--TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEE
T ss_pred             EEEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEEE--CCEEEEEcCcccCCCCCccccccceEEecCCCCeE
Confidence            445566  479999999887543 22211001122222233  5577777773    1       1267788877643

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=92.30  E-value=0.44  Score=38.30  Aligned_cols=109  Identities=11%  Similarity=0.135  Sum_probs=64.3

Q ss_pred             eecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCC-CCCceEEEEe-ecCCcEEEEEccCCCCc
Q 021291          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSK-SQGFVNVLAG-YEDGSILVWDIRNPGIP  244 (314)
Q Consensus       167 ~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~-~~g~~~l~~g-~~dg~i~vwd~~~~~~~  244 (314)
                      .++.||.|.-+|..+|+..-++...       .    .......  -.|.. .++. .++.. +.||.|+.++..+ +..
T Consensus        15 v~t~dG~l~Ald~~tG~~~W~~~~~-------~----~~p~~~~--~~~~~~~~~~-~~vv~p~~dG~l~a~~~~~-G~~   79 (339)
T 2be1_A           15 AADVEGGLHAVDRRNGHIIWSIEPE-------N----FQPLIEI--QEPSRLETYE-TLIIEPFGDGNIYYFNAHQ-GLQ   79 (339)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECGG-------G----SCCSEEC--CCSCTTTSSE-EEEECCSTTTEEEEEETTT-EEE
T ss_pred             EEeCCCeEEEEECCCCcEEEEecCC-------c----cCCcEEe--cCCccccCCc-EEEEEECCCCEEEEEECCC-CcE
Confidence            4667999999999999998887731       0    0111111  01111 1133 34443 6899999999876 533


Q ss_pred             eEeeec----CCcceEE---EEE-e----CCCCeEEEecCCCcEEEEecCCCeeeEee
Q 021291          245 LTAMKV----HLEPVLC---LSI-D----ESCNGGISGGADQKIVLYNLDHSTYVLFG  290 (314)
Q Consensus       245 ~~~~~~----h~~~v~~---~~~-~----~~~~~l~s~s~dg~i~iw~~~~~~~~~~~  290 (314)
                      ...+..    ...++..   ... +    ..+..+++|+.+|.+.-.|+.+|+.++..
T Consensus        80 ~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~  137 (339)
T 2be1_A           80 KLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAF  137 (339)
T ss_dssp             EEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEE
T ss_pred             EeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence            332221    1222221   000 0    03346889999999999999999998874

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=92.29  E-value=2.9  Score=38.93  Aligned_cols=38  Identities=16%  Similarity=0.196  Sum_probs=33.4

Q ss_pred             ceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEe
Q 021291           20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW   57 (314)
Q Consensus        20 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~   57 (314)
                      .+.+++..++..++++-+.|+++|||++.+++++.+..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            56777888888899999999999999999999988764

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=92.08  E-value=9.4  Score=37.19  Aligned_cols=247  Identities=11%  Similarity=0.088  Sum_probs=120.3

Q ss_pred             EEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCe
Q 021291           24 VCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPS  103 (314)
Q Consensus        24 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~  103 (314)
                      .-.+|..+.+|.=. ..++.|+|+++...+..+...   ..|.-=.|-.  + +.|+-.+ +..|.-|++.......+ +
T Consensus        71 AIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~---e~VvfWkWis--~-~~l~lVT-~~aVyHW~~~~~s~P~k-~  141 (1630)
T 1xi4_A           71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---DDVTFWKWIS--L-NTVALVT-DNAVYHWSMEGESQPVK-M  141 (1630)
T ss_pred             hccCCCcceEEEec-CCeEEEeehHHhhhhcccccC---CCceEEEecC--C-CeeEEEc-CCeEEEeccCCCCccHH-H
Confidence            34566666666544 678999999988777766554   3466667765  3 5555544 45899999975321110 1


Q ss_pred             eeeecceeeEEEe----eeeeccccccc------cCCCCcceeeccCCceeeecCCCCCC--ceecc----CCCceEEEe
Q 021291          104 LTIKTNSYHFCKL----SLVKEPYANAK------QANEPKDCYEREVGETVDTDSLCDSK--DDVPA----EGPKYMAVA  167 (314)
Q Consensus       104 ~~~~~~~~~~~~~----~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~  167 (314)
                      +..+..-.....+    +.........+      ...+.+..+.++  +.....+.||..  ..+-.    ....+++.+
T Consensus       142 fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~e--r~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~  219 (1630)
T 1xi4_A          142 FDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD--RKVSQPIEGHAASFAQFKMEGNAEESTLFCFA  219 (1630)
T ss_pred             HhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecc--cccchhhhHhHhhhheeccCCCCCCceEEEEE
Confidence            2111111111111    11111110000      111222222222  233334455544  22222    222333321


Q ss_pred             e--cCcCeEEEEecCCC-ceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCc
Q 021291          168 G--EQLSEVEIWDLNTA-ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (314)
Q Consensus       168 g--~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~  244 (314)
                      -  ...+.+.|-++... .....+... .+...--++.......++. .++.  .|  .+..-+.-|.|++||+.+ +.+
T Consensus       220 ~~~~~g~kLhi~Ei~~~~~~~~~f~kk-~~~~~~~~~~~~Dfpv~~~-vs~k--~g--~iy~itk~G~~~~~d~~t-~~~  292 (1630)
T 1xi4_A          220 VRGQAGGKLHIIEVGTPPTGNQPFPKK-AVDVFFPPEAQNDFPVAMQ-ISEK--HD--VVFLITKYGYIHLYDLET-GTC  292 (1630)
T ss_pred             EecCCCceEEEEecCCCccCCCCCccc-cccccCCcccccCcceEEE-eccc--cC--EEEEEecCceEEEEeccc-chh
Confidence            1  11267888877432 110111100 0000000111233455555 6654  23  677777889999999998 777


Q ss_pred             eEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeE
Q 021291          245 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVL  288 (314)
Q Consensus       245 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~  288 (314)
                      +..-.-..++|...+.+....-++.....|.|.--.++....+-
T Consensus       293 i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv~  336 (1630)
T 1xi4_A          293 IYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIP  336 (1630)
T ss_pred             hhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEccchhhh
Confidence            76655555666655554333334555577777766666655443

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=91.99  E-value=2.3  Score=31.78  Aligned_cols=108  Identities=7%  Similarity=-0.072  Sum_probs=55.8

Q ss_pred             ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcE
Q 021291          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI  233 (314)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i  233 (314)
                      ++|+|+|. +.++   .+|.++-.+..+.....-+......   +...  ...-.++. |.|+   |. +.++  .||.|
T Consensus        46 laf~P~G~-LYaV---~~G~Ly~~~~~t~~~~~W~~s~t~I---G~~G--w~~F~a~~-fD~~---G~-LYav--~dG~i  109 (236)
T 1tl2_A           46 LFLSPGGE-LYGV---LNDKIYKGTPPTHDNDNWMGRAKKI---GNGG--WNQFQFLF-FDPN---GY-LYAV--SKDKL  109 (236)
T ss_dssp             EEECTTSC-EEEE---ETTEEEEESCCCSTTCCHHHHCEEE---ECSC--GGGCSEEE-ECTT---SC-EEEE--ETTEE
T ss_pred             EEECCCcc-EEEE---eCCeEEEECCCCCCcccccccccEe---cccc--cccceEEE-ECCC---CC-EEEe--CCCEE
Confidence            78999875 5654   2577777776552221111100000   0000  11134555 8887   54 3333  66999


Q ss_pred             EEEEccCCCCc--e---Eeeec-CCcceEEEEEeCCCCeEEEecCCCcEEEE
Q 021291          234 LVWDIRNPGIP--L---TAMKV-HLEPVLCLSIDESCNGGISGGADQKIVLY  279 (314)
Q Consensus       234 ~vwd~~~~~~~--~---~~~~~-h~~~v~~~~~~~~~~~l~s~s~dg~i~iw  279 (314)
                      +-++-.+.+.-  +   ..+.. -=..+..|.|+|+|.+.+..  |+.++-+
T Consensus       110 yr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~  159 (236)
T 1tl2_A          110 YKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKA  159 (236)
T ss_dssp             EEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEE
T ss_pred             EEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEec
Confidence            88775331211  0   11110 11367899999999865555  7775443

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=91.48  E-value=5.7  Score=33.42  Aligned_cols=72  Identities=10%  Similarity=0.091  Sum_probs=44.8

Q ss_pred             ceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEE--EEecc----CCcccEEEEEEcccCC---CCeEE
Q 021291           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVS--SSWVH----SAAHGIVSVATGPSIG---LNKVI   80 (314)
Q Consensus        10 ~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~--~~~~~----~~~~~v~~~~~~~~~~---~~~l~   80 (314)
                      .+..+-.--...+.|+|.|+|+++++-...+.|++++..+++...  .+...    ........|+|+|  +   +..|+
T Consensus        18 ~~~~~a~~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~P--df~~~g~lY   95 (454)
T 1cru_A           18 DKKVILSNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHP--DFKNNPYIY   95 (454)
T ss_dssp             CEEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECT--TTTTSCEEE
T ss_pred             EEEEEECCCCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECC--CcCcCCEEE
Confidence            344444344567899999999987775554578888865554322  22110    1224578999998  5   55555


Q ss_pred             Eee
Q 021291           81 SQG   83 (314)
Q Consensus        81 s~~   83 (314)
                      .+.
T Consensus        96 v~~   98 (454)
T 1cru_A           96 ISG   98 (454)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=91.47  E-value=1  Score=38.76  Aligned_cols=109  Identities=10%  Similarity=0.105  Sum_probs=65.5

Q ss_pred             ceeccCCCceEEEeecCcCeEEEEecCCCceeee--e-cccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecC
Q 021291          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTR--L-HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED  230 (314)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~--~-~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~d  230 (314)
                      +.++|||+++++ +|-.+.++.++|.+.......  + ......  .+... ..-.....+ |.++   |. ...+-..|
T Consensus       328 v~vsPDGkyi~v-~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~--~ae~e-~GlGPlHt~-Fd~~---G~-aYTtlfid  398 (638)
T 3sbq_A          328 CNTSSDGKYFIA-AGKLSPTCSMIAIDKLPDLFAGKLADPRDVI--VGEPE-LGLGPLHTT-FDGR---GN-AYTTLFID  398 (638)
T ss_dssp             EEECTTSCEEEE-ECTTSSBEEEEEGGGHHHHHTTCCSCGGGGE--EECCB-CCSCEEEEE-ECSS---SE-EEEEETTT
T ss_pred             eeeCCCCCEEEE-cCCCCCeEEEEEeehhhhhhhccccCcccce--Eeecc-CCCcccEEE-ECCC---Cc-eEeeeeec
Confidence            889999998776 677789999999874321000  0 000000  01111 122344454 9887   53 67777899


Q ss_pred             CcEEEEEccCC---------CCceEeeecCCcceEEEEE-----eCCCCeEEEec
Q 021291          231 GSILVWDIRNP---------GIPLTAMKVHLEPVLCLSI-----DESCNGGISGG  271 (314)
Q Consensus       231 g~i~vwd~~~~---------~~~~~~~~~h~~~v~~~~~-----~~~~~~l~s~s  271 (314)
                      ..|.-|++...         ...+..+..|-.+-...+-     .++|++|++..
T Consensus       399 SqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln  453 (638)
T 3sbq_A          399 SQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS  453 (638)
T ss_dssp             TEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred             ceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence            99999998741         1355666666554433332     67888888874

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=91.44  E-value=4.7  Score=32.46  Aligned_cols=31  Identities=23%  Similarity=0.299  Sum_probs=24.3

Q ss_pred             cEEEEEEcccCCCCeEEEeecCCeEEEEeCCCC
Q 021291           64 GIVSVATGPSIGLNKVISQGRDGTVKCWDIENG   96 (314)
Q Consensus        64 ~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~   96 (314)
                      ..+.|+|.|  ++.++++--..|.|++++..++
T Consensus        33 ~P~~ia~~p--dG~llVter~~G~I~~v~~~~g   63 (347)
T 3das_A           33 SPWGLAPLP--GGDLLVSSRDEATITRVDAKTG   63 (347)
T ss_dssp             SEEEEEECT--TSCEEEEETTTCEEEEECTTTC
T ss_pred             CceEEEEcC--CCcEEEEEecCCEEEEEECCCC
Confidence            378999999  9887666555899999986654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=90.55  E-value=9.2  Score=34.20  Aligned_cols=68  Identities=10%  Similarity=0.086  Sum_probs=36.2

Q ss_pred             cCCCEEEEecCC----CeEEEEeCCCCeEEEEE-e-----ccCCcccEEEEEEcccCCCCeEEEeecCC------eEEEE
Q 021291           28 QTKPILFAGTTG----GELRIWDTVQHRTVSSS-W-----VHSAAHGIVSVATGPSIGLNKVISQGRDG------TVKCW   91 (314)
Q Consensus        28 ~~~~~l~s~~~d----g~v~iwd~~~~~~~~~~-~-----~~~~~~~v~~~~~~~~~~~~~l~s~~~dg------~v~iw   91 (314)
                      .++.+++.|+.+    ..+.+||..+++....- .     .......-..+.+..  ++..++.|+.++      .+.+|
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~--~~~lyv~GG~~~~~~~~~dv~~y  473 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR--NNQLLLIGGRKAPHQGLSDNWIF  473 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT--TTEEEEECCBSSTTCBCCCCEEE
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc--CCEEEEEcCCCCCCCccccEEEE
Confidence            466777778753    36888888776544332 1     111111123333432  336666666532      46777


Q ss_pred             eCCCCC
Q 021291           92 DIENGG   97 (314)
Q Consensus        92 d~~~~~   97 (314)
                      |+.+.+
T Consensus       474 d~~t~~  479 (695)
T 2zwa_A          474 DMKTRE  479 (695)
T ss_dssp             ETTTTE
T ss_pred             eCCCCc
Confidence            776653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=90.32  E-value=7  Score=38.04  Aligned_cols=178  Identities=11%  Similarity=0.073  Sum_probs=92.4

Q ss_pred             CCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEee
Q 021291           38 TGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLS  117 (314)
Q Consensus        38 ~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  117 (314)
                      ...+|.|-|+.++..+.+-...     --+.-.+|  ..+.++.= ...++.|+|+++....+  .+.+... ....   
T Consensus        46 ~~~~vvIidl~~~~~~~rrpi~-----AdsAIMnP--~~~iiALr-ag~~lQiFnl~~k~klk--s~~~~e~-VvfW---  111 (1630)
T 1xi4_A           46 EQAQVVIIDMNDPSNPIRRPIS-----ADSAIMNP--ASKVIALK-AGKTLQIFNIEMKSKMK--AHTMTDD-VTFW---  111 (1630)
T ss_pred             CCceEEEEECCCCCCccccccc-----chhhccCC--CcceEEEe-cCCeEEEeehHHhhhhc--ccccCCC-ceEE---
Confidence            3447888888876544221111     12334566  54555543 36799999999876554  2222221 1111   


Q ss_pred             eeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCC-ceeeeecccccCCC
Q 021291          118 LVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTA-ERCTRLHQNSCGGS  196 (314)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~-~~~~~~~~~~~~~~  196 (314)
                                                           .|-.+ +.+.+++   +..|+-|++... .+...|.       
T Consensus       112 -------------------------------------kWis~-~~l~lVT---~~aVyHW~~~~~s~P~k~fd-------  143 (1630)
T 1xi4_A          112 -------------------------------------KWISL-NTVALVT---DNAVYHWSMEGESQPVKMFD-------  143 (1630)
T ss_pred             -------------------------------------EecCC-CeeEEEc---CCeEEEeccCCCCccHHHHh-------
Confidence                                                 12222 2344434   367999999742 3444444       


Q ss_pred             CCcCCCCCceeeeEEEecCCCCCCceEEEEee------cCCcEEEEEccCCCCceEeeecCCcceEEEEEe--CC-CCeE
Q 021291          197 PNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY------EDGSILVWDIRNPGIPLTAMKVHLEPVLCLSID--ES-CNGG  267 (314)
Q Consensus       197 ~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~------~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~--~~-~~~l  267 (314)
                       .|..-...-+.... -+++   .+-.+++|=      -.|.+.+|+..  .+.-+.+.||...-..+...  +. ...+
T Consensus       144 -R~~~L~~~QIinY~-~d~~---~kW~~l~gi~~~~~~v~G~mQLyS~e--r~~sQ~iegha~~F~~~~~~~~~~~~~l~  216 (1630)
T 1xi4_A          144 -RHSSLAGCQIINYR-TDAK---QKWLLLTGISAQQNRVVGAMQLYSVD--RKVSQPIEGHAASFAQFKMEGNAEESTLF  216 (1630)
T ss_pred             -cchhcccCeeEEee-eCCC---CCeEEEEeeccCCCcccceeeeeecc--cccchhhhHhHhhhheeccCCCCCCceEE
Confidence             34332233444433 4444   442333332      45889999988  45556677887655555442  11 1222


Q ss_pred             EEecC---CCcEEEEecCCC
Q 021291          268 ISGGA---DQKIVLYNLDHS  284 (314)
Q Consensus       268 ~s~s~---dg~i~iw~~~~~  284 (314)
                      +-+..   .++++|-++...
T Consensus       217 ~f~~~~~~g~kLhi~Ei~~~  236 (1630)
T 1xi4_A          217 CFAVRGQAGGKLHIIEVGTP  236 (1630)
T ss_pred             EEEEecCCCceEEEEecCCC
Confidence            21111   268888888653

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=88.74  E-value=8.2  Score=31.08  Aligned_cols=83  Identities=12%  Similarity=0.075  Sum_probs=50.5

Q ss_pred             eEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEE--EEe--ccCCcccEEEEEEcccCC---CCeEEEe-
Q 021291           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVS--SSW--VHSAAHGIVSVATGPSIG---LNKVISQ-   82 (314)
Q Consensus        11 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~--~~~--~~~~~~~v~~~~~~~~~~---~~~l~s~-   82 (314)
                      +.++-.--..-+.|+|.|||+++++--..|.|++++..+++...  .+.  ..........|+++|  +   ...|+.. 
T Consensus        24 ~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~P--df~~~g~lYv~y  101 (347)
T 3das_A           24 LRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSP--DYASDHMVYAYF  101 (347)
T ss_dssp             EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECT--THHHHCEEEEEE
T ss_pred             eEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEecc--ccccCCEEEEEE
Confidence            33444445667899999999988877668999999866555322  111  012224589999998  5   2333332 


Q ss_pred             --ecCCeEEEEeCCC
Q 021291           83 --GRDGTVKCWDIEN   95 (314)
Q Consensus        83 --~~dg~v~iwd~~~   95 (314)
                        ..++.|.-|....
T Consensus       102 t~~~~~~v~R~~~~~  116 (347)
T 3das_A          102 TSASDNRIVRMLYDE  116 (347)
T ss_dssp             ECSSSEEEEEEEBCT
T ss_pred             ecCCCCEEEEEEeCC
Confidence              2344555555544

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=87.87  E-value=9.4  Score=30.72  Aligned_cols=51  Identities=8%  Similarity=0.001  Sum_probs=29.7

Q ss_pred             CceEEEEeecCCcEEEEEccCCCCc-----eEeeecCCcceEEEEEeCCCCeEEEec
Q 021291          220 GFVNVLAGYEDGSILVWDIRNPGIP-----LTAMKVHLEPVLCLSIDESCNGGISGG  271 (314)
Q Consensus       220 g~~~l~~g~~dg~i~vwd~~~~~~~-----~~~~~~h~~~v~~~~~~~~~~~l~s~s  271 (314)
                      |. ++++....+.|...++...+..     ...+-.-...+..+++.|+|.++++..
T Consensus       278 G~-l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          278 GD-LYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             TE-EEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred             CE-EEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence            44 5555556677877777642221     112212235788999999987665543

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=87.47  E-value=9  Score=30.07  Aligned_cols=60  Identities=12%  Similarity=0.082  Sum_probs=31.3

Q ss_pred             EEEEecCCCeEEEEeCCCCeEEEEEeccC-CcccEEEEEEcccCCCCeEEEeec----CC-------eEEEEeCCCCC
Q 021291           32 ILFAGTTGGELRIWDTVQHRTVSSSWVHS-AAHGIVSVATGPSIGLNKVISQGR----DG-------TVKCWDIENGG   97 (314)
Q Consensus        32 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~----dg-------~v~iwd~~~~~   97 (314)
                      +++.|+.  .+.+||..+.+... ..... .+..-.+++ ..  ++..++.|+.    ++       .+.+||..+.+
T Consensus        18 i~~~GG~--~~~~yd~~~~~W~~-~~~~~~~~r~~~~~~-~~--~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~   89 (318)
T 2woz_A           18 ILLVNDT--AAVAYDPMENECYL-TALAEQIPRNHSSIV-TQ--QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSE   89 (318)
T ss_dssp             EEEECSS--EEEEEETTTTEEEE-EEECTTSCSSEEEEE-CS--SSCEEEEESSCC-------CCCBEEEEEETTTTE
T ss_pred             hhhcccc--ceEEECCCCCceec-ccCCccCCccceEEE-EE--CCEEEEECCcccCccccCCCccccEEEEeCCCCc
Confidence            4555554  38899998887544 22111 111122333 33  5577777773    11       16677776654

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=87.12  E-value=17  Score=32.79  Aligned_cols=71  Identities=10%  Similarity=0.144  Sum_probs=44.8

Q ss_pred             CCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEecc--CCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCC
Q 021291           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVH--SAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN   95 (314)
Q Consensus        18 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~   95 (314)
                      ...|.++.-..+| +|-.|+.+| +..||-.+   ...+...  .....|.++....  + ..|..++.+| +..||..+
T Consensus        21 ~n~V~~I~qD~~G-~lWigT~~G-L~ryDG~~---~~~~~~~~~~~~~~i~~i~~d~--~-g~lWigT~~G-l~~yd~~~   91 (758)
T 3ott_A           21 ASVVSCFLQDSEG-LIWIGSNKG-LFSYDGYS---TQQHFTYGENNNTRIYCGVIID--N-TYLYMGTDNG-ILVYNYRA   91 (758)
T ss_dssp             CCCEEEEEECTTS-CEEEEESSC-EEEECSSC---EEECSCTTSTTSSCEEEEEEET--T-TEEEEEETTE-EEEEETTT
T ss_pred             cceEEEEEECCCC-CEEEEECCC-ccccCCCc---eEEEEccCCCCCceEEEEEEcC--C-CcEEEEeCCC-eEEEeCCC
Confidence            4679999988888 455577788 66777432   1122111  1124588887766  5 4566666655 78999876


Q ss_pred             CC
Q 021291           96 GG   97 (314)
Q Consensus        96 ~~   97 (314)
                      .+
T Consensus        92 ~~   93 (758)
T 3ott_A           92 DR   93 (758)
T ss_dssp             TE
T ss_pred             CE
Confidence            53

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=86.96  E-value=10  Score=30.10  Aligned_cols=67  Identities=12%  Similarity=0.011  Sum_probs=37.1

Q ss_pred             CCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEecc--CCcccEEEEEEcccCCCCeEEEeecCCeEEE
Q 021291           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVH--SAAHGIVSVATGPSIGLNKVISQGRDGTVKC   90 (314)
Q Consensus        18 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~i   90 (314)
                      ...+.++.|.+++..+++ +.+|.| +...+.++.-..+...  .....+.+|.|.+  + . ++.++.++.|..
T Consensus        35 ~~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~--~-~-~~~~g~~g~i~~  103 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG--N-E-GWIVGEPPIMLH  103 (327)
T ss_dssp             SSCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET--T-E-EEEEEETTEEEE
T ss_pred             CCcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC--C-e-EEEEECCCeEEE
Confidence            457899999877777775 456755 3333434322221111  1113588999876  3 3 444556665544

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=85.23  E-value=3.2  Score=30.99  Aligned_cols=89  Identities=10%  Similarity=-0.136  Sum_probs=51.5

Q ss_pred             eeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcc--------eEEEEEeCCCCeEEEecCCCcEE
Q 021291          206 MCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP--------VLCLSIDESCNGGISGGADQKIV  277 (314)
Q Consensus       206 ~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~--------v~~~~~~~~~~~l~s~s~dg~i~  277 (314)
                      ....++ |+|+   |. +.++  .+|.++-.+..+ ... ..+-+....        -..+.|+++|.+.++  .||.|+
T Consensus        42 ~~~~la-f~P~---G~-LYaV--~~G~Ly~~~~~t-~~~-~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iy  110 (236)
T 1tl2_A           42 NFKFLF-LSPG---GE-LYGV--LNDKIYKGTPPT-HDN-DNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLY  110 (236)
T ss_dssp             TCSEEE-ECTT---SC-EEEE--ETTEEEEESCCC-STT-CCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEE
T ss_pred             cceeEE-ECCC---cc-EEEE--eCCeEEEECCCC-CCc-ccccccccEecccccccceEEEECCCCCEEEe--CCCEEE
Confidence            344676 9997   65 3444  677766666543 111 111111222        367889999987666  669888


Q ss_pred             EEecCCCe---------ee-----EeeeeeeecCCCceecee
Q 021291          278 LYNLDHST---------YV-----LFGIGFVCDQEGNKFGTT  305 (314)
Q Consensus       278 iw~~~~~~---------~~-----~~~~~~~~~~~~~~~~~~  305 (314)
                      -++-.+..         .+     ..+..+.++|+|.+++..
T Consensus       111 r~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~  152 (236)
T 1tl2_A          111 KASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH  152 (236)
T ss_dssp             EESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred             EeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence            77753311         11     013455678888877654

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=84.44  E-value=17  Score=30.61  Aligned_cols=114  Identities=10%  Similarity=0.020  Sum_probs=54.7

Q ss_pred             ceeccCCC-ceEEEeecCcCeEEEEecCCCc---eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCC-CceEEEEee
Q 021291          154 DDVPAEGP-KYMAVAGEQLSEVEIWDLNTAE---RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQ-GFVNVLAGY  228 (314)
Q Consensus       154 ~~~~~~~~-~~~~~~g~~d~~i~vwd~~~~~---~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~-g~~~l~~g~  228 (314)
                      ++|.|+|. ++++ + ...|.|++++.....   .+..+...   ...+.......-.+.++ |+|+-.. +..|++-..
T Consensus        19 ~a~~pdG~~rl~V-~-er~G~i~~~~~~g~~~~~~~~~~~~~---~~~g~~~~~e~Gllgia-~~P~f~~n~~lYv~yt~   92 (463)
T 2wg3_C           19 ALHSGDGSQRLFI-L-EKEGYVKILTPEGEIFKEPYLDIHKL---VQSGIKGGDERGLLSLA-FHPNYKKNGKLYVSYTT   92 (463)
T ss_dssp             EECCSSSSCCEEE-E-ETTTEEEEECTTSCBCSSCSEECTTT---BCCCCSSSCCCSEEEEE-ECTTHHHHCEEEEEEEE
T ss_pred             EEECCCCCeEEEE-E-eCCceEEEEeCCCCeeeeeecCCcce---eccCccccCCCcceeeE-eCCCCcCCCEEEEEEeC
Confidence            67889986 5664 3 346999999754221   12222210   00010001123456787 9985211 332333222


Q ss_pred             cC-----------CcEEEEEccCC---------CCceEeee--cCCcceEEEEEeCCCCeEEEecCC
Q 021291          229 ED-----------GSILVWDIRNP---------GIPLTAMK--VHLEPVLCLSIDESCNGGISGGAD  273 (314)
Q Consensus       229 ~d-----------g~i~vwd~~~~---------~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~s~d  273 (314)
                      ..           ..|.-|.+...         .+.+..+.  ........|+|.|||.+.++.+..
T Consensus        93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~  159 (463)
T 2wg3_C           93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG  159 (463)
T ss_dssp             CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred             CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence            11           13444555321         11222222  112346789999999877766543

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=84.23  E-value=15  Score=34.22  Aligned_cols=36  Identities=14%  Similarity=0.115  Sum_probs=31.3

Q ss_pred             ceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291          254 PVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF  289 (314)
Q Consensus       254 ~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~  289 (314)
                      .+.+++..++..++++-+.|+++|+|++.+++.+..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t  272 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET  272 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEee
Confidence            466777788888999999999999999999988765

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=83.80  E-value=8  Score=33.45  Aligned_cols=68  Identities=16%  Similarity=0.065  Sum_probs=49.7

Q ss_pred             ecCCCCCCceEEEEeecCCcEEEEEccCC-----CC------c-eEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEe
Q 021291          213 YLPSKSQGFVNVLAGYEDGSILVWDIRNP-----GI------P-LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN  280 (314)
Q Consensus       213 ~~p~~~~g~~~l~~g~~dg~i~vwd~~~~-----~~------~-~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~  280 (314)
                      .+||   |++++++|-.+.++.++|++..     .+      . +.+.. -.-.....+|+++|....|--.|..|.-|+
T Consensus       330 vsPD---Gkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqvvkWn  405 (638)
T 3sbq_A          330 TSSD---GKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQVVKWN  405 (638)
T ss_dssp             ECTT---SCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEEEEEE
T ss_pred             eCCC---CCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecceEEEEe
Confidence            7777   7767888888999999998731     11      1 22222 234567889999997667777899999999


Q ss_pred             cCCC
Q 021291          281 LDHS  284 (314)
Q Consensus       281 ~~~~  284 (314)
                      ++..
T Consensus       406 i~~a  409 (638)
T 3sbq_A          406 MEEA  409 (638)
T ss_dssp             HHHH
T ss_pred             ccHH
Confidence            9764

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=82.87  E-value=27  Score=31.48  Aligned_cols=200  Identities=12%  Similarity=0.129  Sum_probs=99.2

Q ss_pred             CceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCC
Q 021291           19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL   98 (314)
Q Consensus        19 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~   98 (314)
                      ..|.++....+| .|..|+.+| +..||..+.+... . .......|.++.. .  + ..|..++.+ -|..+|..+++.
T Consensus        63 ~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~-~-~~~~~~~i~~i~~-~--~-g~lWigt~~-Gl~~~~~~~~~~  133 (758)
T 3ott_A           63 TRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQ-P-ETDFPTDVRTMAL-Q--G-DTLWLGALN-GLYTYQLQSRKL  133 (758)
T ss_dssp             SCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECC-C-SCCCCSCEEEEEE-E--T-TEEEEEETT-EEEEEETTTCCE
T ss_pred             ceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEEC-c-ccCCCceEEEEEe-c--C-CcEEEEcCC-cceeEeCCCCeE
Confidence            468888777666 566666666 7899987764332 1 1111133777654 3  4 345556655 688888876542


Q ss_pred             CCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEe
Q 021291           99 SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWD  178 (314)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd  178 (314)
                      .     ..........                 ...+..                +....+|. +.+  |+. +-|..||
T Consensus       134 ~-----~~~~~~~~l~-----------------~~~i~~----------------i~~d~~g~-lWi--gt~-~Gl~~~~  171 (758)
T 3ott_A          134 T-----SFDTRRNGLP-----------------NNTIYS----------------IIRTKDNQ-IYV--GTY-NGLCRYI  171 (758)
T ss_dssp             E-----EECHHHHCCS-----------------CSCEEE----------------EEECTTCC-EEE--EET-TEEEEEE
T ss_pred             E-----EeccCCCCcC-----------------CCeEEE----------------EEEcCCCC-EEE--EeC-CCHhhCc
Confidence            1     1100000000                 000000                11223443 443  332 3488888


Q ss_pred             cCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEE
Q 021291          179 LNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCL  258 (314)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~  258 (314)
                      ..+++.. .+..+      .........+.++. ..++   +. .|..|+. +-+..+|..+ ++...........|.++
T Consensus       172 ~~~~~~~-~~~~~------~~~~~~~~~i~~i~-~d~~---~~-~lWigt~-~Gl~~~~~~~-~~~~~~~~l~~~~i~~i  237 (758)
T 3ott_A          172 PSNGKFE-GIPLP------VHSSQSNLFVNSLL-EDTT---RQ-CVWIGTE-GYLFQYFPST-GQIKQTEAFHNNSIKSL  237 (758)
T ss_dssp             TTTTEEE-EECCC------CCTTCSSCCEEEEE-EETT---TT-EEEEEEE-EEEEEEETTT-TEEEEEEEEEEEEEEEE
T ss_pred             cCCCceE-EecCC------CccccccceeEEEE-EECC---CC-EEEEEEC-CCCeEEcCCC-CeEEeccCCCCCeEEEE
Confidence            8765432 22210      01000122355554 4443   33 4455554 4578888775 43221111123468888


Q ss_pred             EEeCCCCeEEEecCCCcEEEEecCCCe
Q 021291          259 SIDESCNGGISGGADQKIVLYNLDHST  285 (314)
Q Consensus       259 ~~~~~~~~l~s~s~dg~i~iw~~~~~~  285 (314)
                      ..+.+|.+.+ |+.+ -+.+++..+++
T Consensus       238 ~~d~~g~lWi-gT~~-Gl~~~~~~~~~  262 (758)
T 3ott_A          238 ALDGNGDLLA-GTDN-GLYVYHNDTTP  262 (758)
T ss_dssp             EECTTCCEEE-EETT-EEEEECCTTSC
T ss_pred             EEcCCCCEEE-EeCC-ceeEEecCCCc
Confidence            8888887544 4444 47788876543

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=82.59  E-value=1.7  Score=41.45  Aligned_cols=39  Identities=15%  Similarity=0.188  Sum_probs=33.3

Q ss_pred             CceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEe
Q 021291           19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW   57 (314)
Q Consensus        19 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~   57 (314)
                      ..+.+++..++..++++-+.|+++|||++.+++++.+..
T Consensus       238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D  276 (1139)
T 4fhn_B          238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  276 (1139)
T ss_dssp             TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred             ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence            355667777788899999999999999999999988764

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=82.25  E-value=18  Score=29.10  Aligned_cols=51  Identities=14%  Similarity=0.076  Sum_probs=32.4

Q ss_pred             CceEEEEeecCCcEEEEEccCCCCce--Eee-ecCCcceEEEEEeCCCCeEEEec
Q 021291          220 GFVNVLAGYEDGSILVWDIRNPGIPL--TAM-KVHLEPVLCLSIDESCNGGISGG  271 (314)
Q Consensus       220 g~~~l~~g~~dg~i~vwd~~~~~~~~--~~~-~~h~~~v~~~~~~~~~~~l~s~s  271 (314)
                      |. ++++....+.|...++...+...  ..+ .+-...+..+++.|+|.++++..
T Consensus       277 G~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          277 GW-LLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             TE-EEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             Cc-EEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            54 66666667788888887422322  122 22245788999999997666653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	314
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-11
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-05
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	8e-09
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.002
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	6e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.003
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	7e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.003
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.002
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.004

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.5 bits (145), Expect = 4e-11
 Identities = 39/280 (13%), Positives = 91/280 (32%), Gaps = 10/280 (3%)

Query: 6   PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGI 65
           P P     L GHR+ VT V FH    ++ + +    +++WD        +   H+    +
Sbjct: 5   PRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHT--DSV 62

Query: 66  VSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN 125
             ++   S  L    S      +  +           ++    ++     +    +   +
Sbjct: 63  QDISFDHSGKLLASCSADMTIKLWDFQGFE----CIRTMHGHDHNVSSVSIMPNGDHIVS 118

Query: 126 AKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERC 185
           A +    K    +            +    V       +  +      V +W + T E  
Sbjct: 119 ASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK 178

Query: 186 TRLHQNSCGG-SPNFSSKGRGMCMAVQAYLPSKSQGFVN--VLAGYEDGSILVWDIRNPG 242
             L ++       +++ +     ++      +K  G     +L+G  D +I +WD+   G
Sbjct: 179 AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST-G 237

Query: 243 IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD 282
           + L  +  H   V  +         +S   D+ + +++  
Sbjct: 238 MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK 277

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.7 bits (122), Expect = 4e-08
 Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 4/83 (4%)

Query: 10  PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA 69
            +  L GH   V  V FH     + +      LR+WD    R + +   H     + S+ 
Sbjct: 239 CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHF--VTSLD 296

Query: 70  TGPSIGLNKVISQGRDGTVKCWD 92
              +     V++   D TVK W+
Sbjct: 297 FHKT--APYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.6 bits (101), Expect = 2e-05
 Identities = 41/266 (15%), Positives = 88/266 (33%), Gaps = 46/266 (17%)

Query: 14  LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
           + GH  +V+ V        + + +    +++W+      V +   H     +V     P+
Sbjct: 97  MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVR----PN 152

Query: 74  IGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPK 133
                + S   D TV+ W +                          KE  A  ++     
Sbjct: 153 QDGTLIASCSNDQTVRVWVVAT------------------------KECKAELREHRHVV 188

Query: 134 DCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSC 193
           +C       +  + S     +   +  P    ++G +   +++WD++T      L     
Sbjct: 189 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL----- 243

Query: 194 GGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE 253
                      G    V+  L      F+  L+  +D ++ VWD +N    +  +  H  
Sbjct: 244 ----------VGHDNWVRGVLFHSGGKFI--LSCADDKTLRVWDYKN-KRCMKTLNAHEH 290

Query: 254 PVLCLSIDESCNGGISGGADQKIVLY 279
            V  L   ++    ++G  DQ + ++
Sbjct: 291 FVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.8 bits (138), Expect = 4e-10
 Identities = 43/296 (14%), Positives = 93/296 (31%), Gaps = 33/296 (11%)

Query: 13  VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGP 72
            LRGH A +  + +     +L + +  G+L IWD+     V +  + S    +++ A   
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRS--SWVMTCAY-- 105

Query: 73  SIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEP 132
           +   N V   G D     ++++    +   S  +  ++ +      + +        +  
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT 165

Query: 133 KDCYEREVGETVDTDSLCD-SKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAE-------- 183
              ++ E G+   T +        +       + V+G   +  ++WD+            
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225

Query: 184 ----RCTRLHQN-----SCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVN----------V 224
                      N     +                 +  Y        +           +
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285

Query: 225 LAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN 280
           LAGY+D +  VWD          +  H   V CL + +      +G  D  + ++N
Sbjct: 286 LAGYDDFNCNVWDALK-ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.4 bits (129), Expect = 5e-09
 Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 2/87 (2%)

Query: 10  PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA 69
                 GH + +  +CF         G+     R++D    + + +    +   GI SV+
Sbjct: 218 CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277

Query: 70  TGPSIGLNKVISQGRDGTVKCWDIENG 96
              S     +++   D     WD    
Sbjct: 278 FSKS--GRLLLAGYDDFNCNVWDALKA 302

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.1 bits (92), Expect = 2e-04
 Identities = 10/38 (26%), Positives = 16/38 (42%)

Query: 9   DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWD 46
           D   VL GH   V+ +        +  G+    L+IW+
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.4 bits (126), Expect = 8e-09
 Identities = 35/288 (12%), Positives = 79/288 (27%), Gaps = 20/288 (6%)

Query: 8   PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAA----H 63
            + +  + GH   +T +  +     L +G+  G +  W +       S+ + S       
Sbjct: 3   DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQ 58

Query: 64  GIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY 123
              S++   ++ +N +         K     N G ++  +              ++K   
Sbjct: 59  EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR 118

Query: 124 ANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAE 183
            N+  +          VG             D+         +  +              
Sbjct: 119 LNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIA 178

Query: 184 RCTRLHQNSCGGSPNFSSKGRGMCMAVQ-----------AYLPSKSQGFVNVLAGYEDGS 232
               + +       +   K                         +      V  G  D +
Sbjct: 179 AGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN 238

Query: 233 ILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN 280
           I ++ ++ P   + A+  H + V  L  +   +  +S GAD  I  +N
Sbjct: 239 IFIYSVKRPMKIIKALNAHKDGVNNLLWETP-STLVSSGADACIKRWN 285

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 50.3 bits (118), Expect = 1e-07
 Identities = 30/275 (10%), Positives = 73/275 (26%), Gaps = 11/275 (4%)

Query: 8   PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVS 67
                +   H    T      +     +G   G +RIWDT Q   +  + +   +  +  
Sbjct: 48  LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKD 107

Query: 68  VATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAK 127
           ++          + +GR+     +  + G  + N +   +  +    K S      + + 
Sbjct: 108 ISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSD 167

Query: 128 QANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTR 187
                         ++   +                 A  G     + +++     +   
Sbjct: 168 DNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGD-GTIVLYNGVDGTKTGV 226

Query: 188 LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 247
              +S     +  S            +           +   D +I +W++    +  T 
Sbjct: 227 FEDDSLKNVAHSGSVFGLTWSPDGTKI----------ASASADKTIKIWNVATLKVEKTI 276

Query: 248 MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD 282
                     L I  +    +S  A+  I   N +
Sbjct: 277 PVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.5 bits (108), Expect = 2e-06
 Identities = 39/296 (13%), Positives = 81/296 (27%), Gaps = 32/296 (10%)

Query: 13  VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGP 72
           V  GH  ++T +        LF+    G +  WD +     +  +    A  I  + T  
Sbjct: 7   VRYGHNKAITALSSSADGKTLFSADAEGHINSWD-ISTGISNRVFPDVHATMITGIKTTS 65

Query: 73  SIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCK----------------- 115
              L        D  +K       G+ S+ ++  K +S                      
Sbjct: 66  KGDLFT---VSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHI 122

Query: 116 --------LSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167
                     +     ++    +  K        ++               +   + A  
Sbjct: 123 AIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEI 182

Query: 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG 227
                      L   ++  ++   S   +   +          +    S S   V +  G
Sbjct: 183 TSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATG 242

Query: 228 YEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGG--ISGGADQKIVLYNL 281
             D S++VW++  P      +K     +  ++     N    +S G D  I  +N+
Sbjct: 243 SLDNSVIVWNMNKPSDHPIIIK-GAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.6 bits (106), Expect = 3e-06
 Identities = 16/95 (16%), Positives = 28/95 (29%), Gaps = 11/95 (11%)

Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ------HRTVSSSWVHSAAHG 64
              + H A +  V          + +  G L++WD              S +VH +   
Sbjct: 7  ANAGKAHDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLH 64

Query: 65 IVSVATG---PSIGLNKVISQGRDGTVKCWDIENG 96
           V V       +  L  V +    G +  + I   
Sbjct: 65 HVDVLQAIERDAFELCLVATTSFSGDLLFYRITRE 99

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.6 bits (106), Expect = 3e-06
 Identities = 36/299 (12%), Positives = 83/299 (27%), Gaps = 9/299 (3%)

Query: 20  SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKV 79
            ++   +++ +  +       E+ I++   ++ V    +      +  V   P    N++
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD--SNRI 66

Query: 80  ISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDC-YER 138
           ++ G D     W ++         +     +    + +  ++ +A    +     C +E+
Sbjct: 67  VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQ 126

Query: 139 EVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSE---VEIWDLNTAE-RCTRLHQNSCG 194
           E    V        +  V +      +V     S      I+     E            
Sbjct: 127 ENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGS 186

Query: 195 GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP 254
             P               +    S     V     D ++ + D        T     L  
Sbjct: 187 KMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPL 246

Query: 255 VLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFGIGFVCDQEGNKFGTTWHIRHLNS 313
           +    I ES    ++ G D   VL+  D +   L   G +   + +            +
Sbjct: 247 LAVTFITESSL--VAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQN 303

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.6 bits (101), Expect = 1e-05
 Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 6/82 (7%)

Query: 17  HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGL 76
           H+  V  V   Q    + +G+    +  WD      +     H  +  ++SVA      L
Sbjct: 307 HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNS--VISVAVANGSSL 364

Query: 77  ----NKVISQGRDGTVKCWDIE 94
               N   +   D   + W  +
Sbjct: 365 GPEYNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.6 bits (101), Expect = 2e-05
 Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 12/99 (12%)

Query: 8   PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA------ 61
                   GH+ SV  V F +    + +G+    +++W+       S S   ++      
Sbjct: 244 DSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT 303

Query: 62  ----AHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG 96
                  ++SVAT  +     ++S  +D  V  WD ++G
Sbjct: 304 YIGHKDFVLSVATTQND--EYILSGSKDRGVLFWDKKSG 340

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.8 bits (91), Expect = 3e-04
 Identities = 48/299 (16%), Positives = 94/299 (31%), Gaps = 35/299 (11%)

Query: 1   MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
            + + P     +        +  VCF      L  G     +RIWD    + V     H 
Sbjct: 104 AANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHE 163

Query: 61  AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKL---- 116
                +          +K++S   D TV+ WD+  G  S   S+     +          
Sbjct: 164 QDIYSLDYFPSG----DKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKY 219

Query: 117 --------SLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168
                   ++                  E   G      S+  ++D       + +    
Sbjct: 220 IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG------QSVVSGS 273

Query: 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY 228
                V++W+L  A   +     + G         +   ++V A   +       +L+G 
Sbjct: 274 LD-RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSV-ATTQNDEY----ILSGS 327

Query: 229 EDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGG------ISGGADQKIVLYNL 281
           +D  +L WD ++ G PL  ++ H   V+ +++    + G       +G  D K  ++  
Sbjct: 328 KDRGVLFWDKKS-GNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 39/290 (13%), Positives = 83/290 (28%), Gaps = 14/290 (4%)

Query: 4   RPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAH 63
           R        VL+GH   V   C       + +G+    L++W  V  + + +   H+   
Sbjct: 2   RRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT--G 58

Query: 64  GIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY 123
           G+ S     +I ++    +               L  + S     + +    +S  ++  
Sbjct: 59  GVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDAT 118

Query: 124 ANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ-------LSEVEI 176
                    +  +              D +  V       + V   +       L     
Sbjct: 119 LRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTN 178

Query: 177 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFV----NVLAGYEDGS 232
              +       +   S   S        G C+       S + G       +++G  D +
Sbjct: 179 RVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADST 238

Query: 233 ILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD 282
           + +WDI+      T    +        +  + N  I+   D  + L++L 
Sbjct: 239 VKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK 288

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.002
 Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 5/91 (5%)

Query: 6   PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGI 65
              + +  L GH++  + +       IL +G     ++IWD    + +         +  
Sbjct: 205 ETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCL---QTLQGPNKH 259

Query: 66  VSVATGPSIGLNKVISQGRDGTVKCWDIENG 96
            S  T      N VI+   DGTVK WD++ G
Sbjct: 260 QSAVTCLQFNKNFVITSSDDGTVKLWDLKTG 290

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.8 bits (96), Expect = 6e-05
 Identities = 24/315 (7%), Positives = 71/315 (22%), Gaps = 44/315 (13%)

Query: 10  PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA 69
            +  L GH   V  + +     ++   +   +  +      +   +         +  + 
Sbjct: 45  FLLQLSGHDGGVWALKYAHGGILV---SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLD 101

Query: 70  TGPSIGLNKVISQGRDGTVKCWDIENGGLSS-------NPSLTIKTNSYHFCKLSLVKEP 122
                 +  +++  RD T+  W +               P +        +    L    
Sbjct: 102 IVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM 161

Query: 123 YANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTA 182
            +    +             T+    +   K      G      +     E +     + 
Sbjct: 162 ASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASM 221

Query: 183 ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFV-------------------- 222
           +   R+     G           +   ++                               
Sbjct: 222 DTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHH 281

Query: 223 -------------NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGIS 269
                        N+L    +    ++++R+  +    +    + +  ++         +
Sbjct: 282 TNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAA 340

Query: 270 GGADQKIVLYNLDHS 284
              D +  L  LD S
Sbjct: 341 VEKDGQSFLEILDFS 355

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.1 bits (94), Expect = 1e-04
 Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 1/69 (1%)

Query: 25  CFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84
                            +R+WD    + V    +     G   V    + G  ++IS   
Sbjct: 258 LSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSL 316

Query: 85  DGTVKCWDI 93
           DGT+  +++
Sbjct: 317 DGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.4 bits (82), Expect = 0.003
 Identities = 44/285 (15%), Positives = 79/285 (27%), Gaps = 24/285 (8%)

Query: 9   DPVAVLRGHRAS-VTDVCFHQTKP--ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHG- 64
            PV    GH +S VT V F   K    L +G   G++ +W     +  +S  V+  +   
Sbjct: 53  PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQ 112

Query: 65  -----IVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLV 119
                I  ++         V+ +GRD        ++G      S   +  +         
Sbjct: 113 VLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHL----- 167

Query: 120 KEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDL 179
                +    +         V           S      +G     V     S   +  +
Sbjct: 168 ---KQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITV 224

Query: 180 NTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239
            +  + +     S             +   + A     SQ F        D +I VWD+ 
Sbjct: 225 GSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFA---TVGADATIRVWDVT 281

Query: 240 NPGIPLTAMKVHLEPVLCLSIDESCNGG---ISGGADQKIVLYNL 281
                +    +  + +    +     G    IS   D  +  Y L
Sbjct: 282 T-SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 1e-04
 Identities = 10/77 (12%), Positives = 24/77 (31%), Gaps = 5/77 (6%)

Query: 17  HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGL 76
           H + V  + F        +      L  W T    ++  S   S+   ++S         
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSS---VLSCDISVD--D 318

Query: 77  NKVISQGRDGTVKCWDI 93
             +++   D     +++
Sbjct: 319 KYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 7e-04
 Identities = 33/290 (11%), Positives = 69/290 (23%), Gaps = 27/290 (9%)

Query: 16  GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH---RTVSSSWVHSAAHGIVSVATGP 72
            H   V  V        ++ G   G +++WD         VS     +  + I S    P
Sbjct: 49  NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107

Query: 73  SIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEP 132
                 V  +    ++         + +  + +                    +      
Sbjct: 108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 167

Query: 133 KDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQN- 191
            D + + +       +   S  D+  +G K      +              +        
Sbjct: 168 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQI 227

Query: 192 -----SCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVN---------------VLAGYEDG 231
                   G              +    P K Q  ++                ++  +D 
Sbjct: 228 FSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDN 287

Query: 232 SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL 281
            +  W     G  +   K     VL   I       ++G  D+K  +Y +
Sbjct: 288 LLNAWRTPY-GASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 32/288 (11%), Positives = 73/288 (25%), Gaps = 26/288 (9%)

Query: 11  VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHG--IVSV 68
           V + +  +  ++D+    +K +L   +  G L ++     +  +   + S  +   ++  
Sbjct: 4   VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYK-FDIQAKNVDLLQSLRYKHPLLCC 62

Query: 69  ATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQ 128
               +      I  G            G  S       + N           +    A  
Sbjct: 63  NFIDNTD--LQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASW 120

Query: 129 ANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRL 188
               +    R  G+ V      +S +         M     +        +       + 
Sbjct: 121 DGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR------LIVGMNNSQVQW 174

Query: 189 HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248
            +       N + +  G+   ++       +          DG + V    + G    + 
Sbjct: 175 FRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEG-YACSSIDGRVAVEFFDDQGDDYNSS 233

Query: 249 KV--------------HLEPVLCLSIDESCNGGISGGADQKIVLYNLD 282
           K                  PV  +          + G+D  I  +NL 
Sbjct: 234 KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ 281

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.4 bits (82), Expect = 0.003
 Identities = 13/90 (14%), Positives = 25/90 (27%), Gaps = 5/90 (5%)

Query: 14  LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
                  V  + F      L+   + G +  W+    + + +       +    V    S
Sbjct: 247 DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF---NEDSVVKIACS 303

Query: 74  IGLNKVISQGRDGTVKCWDIENGGLSSNPS 103
              N +     D T K     +  +  N S
Sbjct: 304 --DNILCLATSDDTFKTNAAIDQTIELNAS 331

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 37/279 (13%), Positives = 82/279 (29%), Gaps = 40/279 (14%)

Query: 10  PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA 69
              +L GH  SV  + + +   I              TV+   V++  + +         
Sbjct: 47  CKRILTGHTGSVLCLQYDERVIITG--------SSDSTVRVWDVNTGEMLNTLIHHCEAV 98

Query: 70  TGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA 129
                    +++  +D ++  WD+ +    +   + +   +          + Y  +   
Sbjct: 99  LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVD--FDDKYIVSASG 156

Query: 130 NEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLH 189
           +     +     E V T +             + +  +G   + + +WD+        L 
Sbjct: 157 DRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVV-SGSSDNTIRLWDIECGACLRVLE 215

Query: 190 QNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN--------P 241
            +            R                   +++G  DG I VWD+           
Sbjct: 216 GHEELVRCIRFDNKR-------------------IVSGAYDGKIKVWDLVAALDPRAPAG 256

Query: 242 GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN 280
            + L  +  H   V  L  DE     +S   D  I++++
Sbjct: 257 TLCLRTLVEHSGRVFRLQFDEFQI--VSSSHDDTILIWD 293

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 36.4 bits (82), Expect = 0.004
 Identities = 9/86 (10%), Positives = 21/86 (24%), Gaps = 8/86 (9%)

Query: 12  AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATG 71
             L       +     +           G L  +D    +      V    + +  +   
Sbjct: 270 IPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK------VTEVKNNLTDLRLS 323

Query: 72  PSIGLNKVISQGRDGTVKCWDIENGG 97
                  V+ +  DG +  + +E   
Sbjct: 324 AD-R-KTVMVRKDDGKIYTFPLEKPE 347

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	314
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.98
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.98
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.96
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.96
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.96
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.95
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.92
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.92
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.91
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.9
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.89
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.88
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.88
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.87
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.86
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.85
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.82
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.82
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.79
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.76
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.74
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.69
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.68
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.67
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.65
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.58
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.42
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.31
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.29
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.24
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.21
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.2
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.16
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.11
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.98
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.96
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.94
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.86
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.81
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.74
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.71
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.61
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.54
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.46
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.36
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.25
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.21
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.19
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.05
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.78
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.61
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.5
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.31
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.26
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.84
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.75
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.59
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	96.58
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.37
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.34
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.17
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.04
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.69
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.47
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.44
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.3
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	95.24
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.81
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	94.44
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	94.01
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	93.3
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	90.88
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	90.68
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	90.0
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	87.28
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	82.62
d1q47a_	495	Semaphorin 3a {Mouse (Mus musculus) [TaxId: 10090]	80.38

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2e-36  Score=245.90  Aligned_cols=273  Identities=15%  Similarity=0.203  Sum_probs=200.4

Q ss_pred             CCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCe
Q 021291            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (314)
Q Consensus         8 ~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (314)
                      .++.++|+||.++|++++|+|++++||||+.||+|+|||+.+++.+..+..|...  |.+++|+|  ++.++++++.|+.
T Consensus        45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~--v~~v~~~~--~~~~l~~~~~d~~  120 (340)
T d1tbga_          45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSW--VMTCAYAP--SGNYVACGGLDNI  120 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSC--EEEEEECT--TSSEEEEEETTCC
T ss_pred             eeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEeccccc--EEeeEeec--cceeeeeecccce
Confidence            3678899999999999999999999999999999999999999999999999854  99999999  9999999999999


Q ss_pred             EEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC---ceeccCCCceE
Q 021291           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK---DDVPAEGPKYM  164 (314)
Q Consensus        88 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  164 (314)
                      +++|+.............+..+..........................+.................   ..+.+.+. ++
T Consensus       121 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  199 (340)
T d1tbga_         121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR-LF  199 (340)
T ss_dssp             EEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSS-EE
T ss_pred             eecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccc-ee
Confidence            999998876554432223322222222111111111111222222222222222222222222222   44555554 33


Q ss_pred             EEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCc
Q 021291          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (314)
Q Consensus       165 ~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~  244 (314)
                      + +|..|+.|++||+++++.+..+.        +|    ...+.+++ |+|+   +. +|++|+.||.|++||++. ...
T Consensus       200 ~-~~~~d~~v~i~d~~~~~~~~~~~--------~h----~~~i~~v~-~~p~---~~-~l~s~s~d~~i~~~~~~~-~~~  260 (340)
T d1tbga_         200 V-SGACDASAKLWDVREGMCRQTFT--------GH----ESDINAIC-FFPN---GN-AFATGSDDATCRLFDLRA-DQE  260 (340)
T ss_dssp             E-EEETTTEEEEEETTTTEEEEEEC--------CC----SSCEEEEE-ECTT---SS-EEEEEETTSCEEEEETTT-TEE
T ss_pred             E-EeecCceEEEEECCCCcEEEEEe--------CC----CCCeEEEE-ECCC---CC-EEEEEeCCCeEEEEeecc-ccc
Confidence            3 67779999999999999998888        66    44788887 9998   55 899999999999999997 555


Q ss_pred             eEee--ecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEeee-------eeeecCCCceece
Q 021291          245 LTAM--KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFGI-------GFVCDQEGNKFGT  304 (314)
Q Consensus       245 ~~~~--~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~-------~~~~~~~~~~~~~  304 (314)
                      +..+  ..+...|++++|++++++|++|+.||.|++||+.+++.+....       .++++|++..+++
T Consensus       261 ~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s  329 (340)
T d1tbga_         261 LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVAT  329 (340)
T ss_dssp             EEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEE
T ss_pred             ccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEE
Confidence            5544  3566789999999999999999999999999999998877643       3456777776654

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.1e-37  Score=247.09  Aligned_cols=248  Identities=17%  Similarity=0.272  Sum_probs=181.5

Q ss_pred             CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcc----------------
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGP----------------   72 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~----------------   72 (314)
                      .+.++|+||.++|++++|+|++++|+||+.||+|+|||+++++.+..+.+|...  |.+++|+|                
T Consensus         8 ~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~--V~~~~~~~~~~~~~~~~~~~~~~~   85 (317)
T d1vyhc1           8 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDS--VQDISFDHSGKLLASCSADMTIKL   85 (317)
T ss_dssp             SCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSC--EEEEEECTTSSEEEEEETTSCCCE
T ss_pred             CccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCc--EEEEeeeccccccccccccccccc
Confidence            345689999999999999999999999999999999999999988888877744  77777766                


Q ss_pred             ------------------------cCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeecccccccc
Q 021291           73 ------------------------SIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQ  128 (314)
Q Consensus        73 ------------------------~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (314)
                                              ..+++.+++++.|+.+++||+++++...  .+..+........+..... ......
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~l~~~~  162 (317)
T d1vyhc1          86 WDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK--TFTGHREWVRMVRPNQDGT-LIASCS  162 (317)
T ss_dssp             EETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE--EEECCSSCEEEEEECTTSS-EEEEEE
T ss_pred             ccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeee--EEccCCCcceeeecccCCC-EEEEEe
Confidence                                    0145567778888888888887765432  2222222222222322211 112223


Q ss_pred             CCCCcceeeccCCceeeecCCCCCC----ceeccCCCc------------------eEEEeecCcCeEEEEecCCCceee
Q 021291          129 ANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPK------------------YMAVAGEQLSEVEIWDLNTAERCT  186 (314)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~------------------~~~~~g~~d~~i~vwd~~~~~~~~  186 (314)
                      ..+...++++........ +..|..    ++++|++..                  .++.+++.|+.|++||+++++++.
T Consensus       163 ~d~~v~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~  241 (317)
T d1vyhc1         163 NDQTVRVWVVATKECKAE-LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM  241 (317)
T ss_dssp             TTSCEEEEETTTCCEEEE-ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEE
T ss_pred             CCCeEEEEeeccceeeEE-EecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEE
Confidence            344556666655543322 222222    334333211                  123367779999999999999998


Q ss_pred             eecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCe
Q 021291          187 RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNG  266 (314)
Q Consensus       187 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  266 (314)
                      .+.        +|    ...+.++. |+|+   ++ +|++|+.||.|++||+++ ++++..+.+|..+|++++|+|++++
T Consensus       242 ~~~--------~~----~~~v~~~~-~~~~---~~-~l~s~~~dg~i~iwd~~~-~~~~~~~~~h~~~V~~~~~s~~~~~  303 (317)
T d1vyhc1         242 TLV--------GH----DNWVRGVL-FHSG---GK-FILSCADDKTLRVWDYKN-KRCMKTLNAHEHFVTSLDFHKTAPY  303 (317)
T ss_dssp             EEE--------CC----SSCEEEEE-ECSS---SS-CEEEEETTTEEEEECCTT-SCCCEEEECCSSCEEEEEECSSSSC
T ss_pred             EEe--------CC----CCCEEEEE-ECCC---CC-EEEEEECCCeEEEEECCC-CcEEEEEcCCCCCEEEEEEcCCCCE
Confidence            888        66    44678887 9998   44 899999999999999998 8899999999999999999999999


Q ss_pred             EEEecCCCcEEEEe
Q 021291          267 GISGGADQKIVLYN  280 (314)
Q Consensus       267 l~s~s~dg~i~iw~  280 (314)
                      |+||+.||.|+|||
T Consensus       304 l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         304 VVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEEETTSEEEEEC
T ss_pred             EEEEeCCCeEEEeC
Confidence            99999999999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.3e-36  Score=243.16  Aligned_cols=264  Identities=16%  Similarity=0.198  Sum_probs=195.3

Q ss_pred             CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeE---EEE--EeccCCcccEEEEEEcccCCCCeEEEee
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT---VSS--SWVHSAAHGIVSVATGPSIGLNKVISQG   83 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~---~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (314)
                      +.++++ +|...|+|++|+|+|++|++|+ ||.|+|||+.++..   +..  ...|.  ..|.+++|+|  ++++|++++
T Consensus        43 ~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~--~~I~~v~~s~--dg~~l~s~~  116 (337)
T d1gxra_          43 RQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRD--NYIRSCKLLP--DGCTLIVGG  116 (337)
T ss_dssp             EEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTT--SBEEEEEECT--TSSEEEEEE
T ss_pred             eEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCC--CcEEEEEEcC--CCCEEEEee
Confidence            445566 7999999999999999999997 89999999976432   222  33455  5599999999  999999999


Q ss_pred             cCCeEEEEeCCCCCCCCCCeeeeec--ceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceec
Q 021291           84 RDGTVKCWDIENGGLSSNPSLTIKT--NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVP  157 (314)
Q Consensus        84 ~dg~v~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  157 (314)
                      .||+|++||+.......  ...+..  .......+++... .............+++....... ....|..    ++|+
T Consensus       117 ~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~~~~~~~~~~~~-~~~~~~~~v~~l~~s  192 (337)
T d1gxra_         117 EASTLSIWDLAAPTPRI--KAELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQTLVR-QFQGHTDGASCIDIS  192 (337)
T ss_dssp             SSSEEEEEECCCC--EE--EEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEE-EECCCSSCEEEEEEC
T ss_pred             ccccccccccccccccc--ccccccccccccccccccccc-ccccccccccccccccccccccc-ccccccccccccccc
Confidence            99999999998654322  222222  2223333332221 12223334456667776655443 3344444    7899


Q ss_pred             cCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEE
Q 021291          158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD  237 (314)
Q Consensus       158 ~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd  237 (314)
                      +++..++  +++.|+.+++||+++++.+..+.             ....+.++. |+|+   ++ ++++|+.|+.|++||
T Consensus       193 ~~~~~~~--~~~~d~~v~i~d~~~~~~~~~~~-------------~~~~i~~l~-~~~~---~~-~l~~~~~d~~i~i~d  252 (337)
T d1gxra_         193 NDGTKLW--TGGLDNTVRSWDLREGRQLQQHD-------------FTSQIFSLG-YCPT---GE-WLAVGMESSNVEVLH  252 (337)
T ss_dssp             TTSSEEE--EEETTSEEEEEETTTTEEEEEEE-------------CSSCEEEEE-ECTT---SS-EEEEEETTSCEEEEE
T ss_pred             ccccccc--cccccccccccccccceeecccc-------------cccceEEEE-Eccc---cc-ccceecccccccccc
Confidence            9987554  46678999999999998887765             245788887 9998   44 899999999999999


Q ss_pred             ccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe------eeeeeecCCCceece
Q 021291          238 IRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF------GIGFVCDQEGNKFGT  304 (314)
Q Consensus       238 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~------~~~~~~~~~~~~~~~  304 (314)
                      ++. ... .....|...|++++|+|++++|++++.||.|++||+.+++.+..      +..++++|++..+++
T Consensus       253 ~~~-~~~-~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t  323 (337)
T d1gxra_         253 VNK-PDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVT  323 (337)
T ss_dssp             TTS-SCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEE
T ss_pred             ccc-ccc-ccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEEEE
Confidence            996 443 45678999999999999999999999999999999999988765      344567788877665

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.9e-35  Score=235.98  Aligned_cols=254  Identities=13%  Similarity=0.138  Sum_probs=191.0

Q ss_pred             CCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeE--EEEEeccCCcccEEEEEEcccCCCCeEEEeec
Q 021291            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT--VSSSWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (314)
Q Consensus         7 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (314)
                      ..+..+.+.+|.+.|++++|+|+|++||+|+.||+|+|||+.+++.  ...+..|.  .+|.+++|+|  ++++|++++.
T Consensus        47 ~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~--~~v~~v~~s~--d~~~l~~~~~  122 (311)
T d1nr0a1          47 SLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFS--GPVKDISWDS--ESKRIAAVGE  122 (311)
T ss_dssp             CSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSS--SCEEEEEECT--TSCEEEEEEC
T ss_pred             CCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccccccccccc--Cccccccccc--cccccccccc
Confidence            3467788999999999999999999999999999999999988754  35567777  4599999999  9999998876


Q ss_pred             --CCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceecc
Q 021291           85 --DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPA  158 (314)
Q Consensus        85 --dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  158 (314)
                        +..+++|++++++...  .+..+........+++............+...+|+++..+... ....|..    ++|+|
T Consensus       123 ~~~~~~~v~~~~~~~~~~--~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~-~~~~~~~~i~~v~~~p  199 (311)
T d1nr0a1         123 GRERFGHVFLFDTGTSNG--NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKS-TFGEHTKFVHSVRYNP  199 (311)
T ss_dssp             CSSCSEEEEETTTCCBCB--CCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEE-EECCCSSCEEEEEECT
T ss_pred             cccccccccccccccccc--cccccccccccccccccceeeeccccccccccccccccccccc-ccccccccccccccCc
Confidence              4569999999887654  3333444455555555443333334455667888887665443 3444544    89999


Q ss_pred             CCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEc
Q 021291          159 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI  238 (314)
Q Consensus       159 ~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~  238 (314)
                      +++.++  +++.|+.|++||+++++....+.... ....+|    ...+.+++ |+|+   ++ +|++|+.||.|+|||+
T Consensus       200 ~~~~l~--~~~~d~~v~~~d~~~~~~~~~~~~~~-~~~~~h----~~~V~~~~-~s~~---~~-~l~tgs~Dg~v~iwd~  267 (311)
T d1nr0a1         200 DGSLFA--STGGDGTIVLYNGVDGTKTGVFEDDS-LKNVAH----SGSVFGLT-WSPD---GT-KIASASADKTIKIWNV  267 (311)
T ss_dssp             TSSEEE--EEETTSCEEEEETTTCCEEEECBCTT-SSSCSS----SSCEEEEE-ECTT---SS-EEEEEETTSEEEEEET
T ss_pred             cccccc--cccccccccccccccccccccccccc-cccccc----cccccccc-cCCC---CC-EEEEEeCCCeEEEEEC
Confidence            987544  56669999999999998877765321 111234    45788887 9998   55 8999999999999999


Q ss_pred             cCCCCceEeeecCCc---ceEEEEEeCCCCeEEEecCCCcEEEEecC
Q 021291          239 RNPGIPLTAMKVHLE---PVLCLSIDESCNGGISGGADQKIVLYNLD  282 (314)
Q Consensus       239 ~~~~~~~~~~~~h~~---~v~~~~~~~~~~~l~s~s~dg~i~iw~~~  282 (314)
                      ++ ++++.++..|..   .+.++.|++  .+|++++.||.|++||++
T Consensus       268 ~t-~~~~~~l~~~~~~~~~~~~~~~~~--~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         268 AT-LKVEKTIPVGTRIEDQQLGIIWTK--QALVSISANGFINFVNPE  311 (311)
T ss_dssp             TT-TEEEEEEECCSSGGGCEEEEEECS--SCEEEEETTCCEEEEETT
T ss_pred             CC-CcEEEEEECCCCccceEEEEEecC--CEEEEEECCCEEEEEeCC
Confidence            98 888888886653   445555554  478999999999999975

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=7.1e-35  Score=234.43  Aligned_cols=249  Identities=14%  Similarity=0.120  Sum_probs=191.3

Q ss_pred             CCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCC
Q 021291           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG   96 (314)
Q Consensus        17 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~   96 (314)
                      +.+.+.+++++|+|+.|+.++ ++.|.+||+++.+....+.+|...  |++++|+|  ++++|++|+.||+|++||+.++
T Consensus        16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~--v~~~~~sp--~g~~latg~~dg~i~iwd~~~~   90 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQ--TTVAKTSP--SGYYCASGDVHGNVRIWDTTQT   90 (311)
T ss_dssp             CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSC--EEEEEECT--TSSEEEEEETTSEEEEEESSST
T ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCC--EEEEEEeC--CCCeEeccccCceEeeeeeecc
Confidence            455677899999999999875 557999999999888889999855  99999999  9999999999999999999987


Q ss_pred             CCCCCCeeeeecceeeEEEeeeeeccccccccC-CCCcceeeccCCceeeecCCCCCC----ceeccCCCceEEEeecCc
Q 021291           97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA-NEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQL  171 (314)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d  171 (314)
                      .......+..+........+++........... .....+|++..... ...+.+|..    ++|+|+++++++ +|+.|
T Consensus        91 ~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~-~~~l~~h~~~v~~v~~~~~~~~~l~-sgs~d  168 (311)
T d1nr0a1          91 THILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS-NGNLTGQARAMNSVDFKPSRPFRII-SGSDD  168 (311)
T ss_dssp             TCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCB-CBCCCCCSSCEEEEEECSSSSCEEE-EEETT
T ss_pred             ccccccccccccCccccccccccccccccccccccccccccccccccc-cccccccccccccccccccceeeec-ccccc
Confidence            654311222233344444444433222222211 12345666665543 334566666    889999987665 67779


Q ss_pred             CeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEee---
Q 021291          172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM---  248 (314)
Q Consensus       172 ~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~---  248 (314)
                      +.|++||+++++....+.        +|    ...+.++. |+|+   ++ ++++++.|+.|++||.++ +..+..+   
T Consensus       169 ~~i~i~d~~~~~~~~~~~--------~~----~~~i~~v~-~~p~---~~-~l~~~~~d~~v~~~d~~~-~~~~~~~~~~  230 (311)
T d1nr0a1         169 NTVAIFEGPPFKFKSTFG--------EH----TKFVHSVR-YNPD---GS-LFASTGGDGTIVLYNGVD-GTKTGVFEDD  230 (311)
T ss_dssp             SCEEEEETTTBEEEEEEC--------CC----SSCEEEEE-ECTT---SS-EEEEEETTSCEEEEETTT-CCEEEECBCT
T ss_pred             cccccccccccccccccc--------cc----cccccccc-cCcc---cc-cccccccccccccccccc-cccccccccc
Confidence            999999999999888777        55    44688887 9998   55 899999999999999987 5555544   


Q ss_pred             ----ecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEee
Q 021291          249 ----KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFG  290 (314)
Q Consensus       249 ----~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~  290 (314)
                          .+|...|++++|+|++++|++|+.||.|+|||+++++.+..+
T Consensus       231 ~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l  276 (311)
T d1nr0a1         231 SLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI  276 (311)
T ss_dssp             TSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence                368899999999999999999999999999999999887654

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.8e-35  Score=234.75  Aligned_cols=250  Identities=15%  Similarity=0.184  Sum_probs=178.8

Q ss_pred             CCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEe-ccCCcccEEEEEEcccCCCCeEEEeecCC
Q 021291            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW-VHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (314)
Q Consensus         8 ~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~s~~~dg   86 (314)
                      ++..+++.||.++|++++|+|++++|+||+.||+|++||+++++++..+. .|.  ..|.+++|+|  ++. +++++.|+
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~--~~v~~v~~~~--~g~-~~~~~~d~   76 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHA--TMITGIKTTS--KGD-LFTVSWDD   76 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCS--SCEEEEEECT--TSC-EEEEETTT
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCC--CcEEEEEeec--cce-eeccccee
Confidence            45688999999999999999999999999999999999999999888774 566  4599999999  865 66777899


Q ss_pred             eEEEEeCCCCCCCCCCee-eeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC--ceeccCCCce
Q 021291           87 TVKCWDIENGGLSSNPSL-TIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKY  163 (314)
Q Consensus        87 ~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  163 (314)
                      .+++|+............ ...........++....  ...........+|+  ..+.. .....+..  ++|+|+++.+
T Consensus        77 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~--~~~~~~~~~i~~~~--~~~~~-~~~~~~~~~~~~~s~~~~~l  151 (299)
T d1nr0a2          77 HLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD--IAVAACYKHIAIYS--HGKLT-EVPISYNSSCVALSNDKQFV  151 (299)
T ss_dssp             EEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSS--CEEEEESSEEEEEE--TTEEE-EEECSSCEEEEEECTTSCEE
T ss_pred             eEEEeccCCccccccccccccccccccccccccccc--cccccccccccccc--ccccc-cccccccccccccccccccc
Confidence            999999876543221111 11122222222322211  11111122223332  22222 22222323  8899998754


Q ss_pred             EEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCC
Q 021291          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI  243 (314)
Q Consensus       164 ~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~  243 (314)
                      +  +|+.|+.|++||+++++.......       .|    ...+.++. |+|+   +. +|++++.|+.|++||+.+ +.
T Consensus       152 ~--~g~~dg~i~~~d~~~~~~~~~~~~-------~~----~~~i~~~~-~~~~---~~-~l~~~~~d~~i~~~~~~~-~~  212 (299)
T d1nr0a2         152 A--VGGQDSKVHVYKLSGASVSEVKTI-------VH----PAEITSVA-FSNN---GA-FLVATDQSRKVIPYSVAN-NF  212 (299)
T ss_dssp             E--EEETTSEEEEEEEETTEEEEEEEE-------EC----SSCEEEEE-ECTT---SS-EEEEEETTSCEEEEEGGG-TT
T ss_pred             c--cccccccccccccccccccccccc-------cc----cccccccc-cccc---cc-cccccccccccccccccc-cc
Confidence            3  577799999999988765443221       34    44688887 9998   44 899999999999999986 43


Q ss_pred             c---eEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCee
Q 021291          244 P---LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTY  286 (314)
Q Consensus       244 ~---~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~  286 (314)
                      .   ...+.+|..+|++++|+|++.+|++|+.||.|++||+++++.
T Consensus       213 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~  258 (299)
T d1nr0a2         213 ELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD  258 (299)
T ss_dssp             EESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTS
T ss_pred             cccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCc
Confidence            3   345678999999999999999999999999999999987754

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.7e-34  Score=237.12  Aligned_cols=261  Identities=20%  Similarity=0.235  Sum_probs=184.8

Q ss_pred             cCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEecc----------------CCcccEEEEEEcccCCCCe
Q 021291           15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVH----------------SAAHGIVSVATGPSIGLNK   78 (314)
Q Consensus        15 ~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~~~   78 (314)
                      .+|++.|+|++|+|||++||+|+ |+.|+|||+.+++.+..+..+                .+...|.+++|+|  ++++
T Consensus        59 ~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~--~~~~  135 (388)
T d1erja_          59 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP--DGKF  135 (388)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECT--TSSE
T ss_pred             CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECC--CCCc
Confidence            36999999999999999999987 899999999999887766432                1224599999999  9999


Q ss_pred             EEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC--cee
Q 021291           79 VISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDV  156 (314)
Q Consensus        79 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  156 (314)
                      |++|+.||+|++||...++...  ....+........+.... .........+...+|+................  +.+
T Consensus       136 l~s~~~dg~v~i~~~~~~~~~~--~~~~h~~~v~~~~~~~~~-~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~  212 (388)
T d1erja_         136 LATGAEDRLIRIWDIENRKIVM--ILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAV  212 (388)
T ss_dssp             EEEEETTSCEEEEETTTTEEEE--EECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEE
T ss_pred             ceeccccccccccccccccccc--cccccccccccccccccc-ccccccccceeeeeeeccccccccccccccccccccc
Confidence            9999999999999999876533  222222233333332221 12223334455667777665544333222222  555


Q ss_pred             ccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEE
Q 021291          157 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW  236 (314)
Q Consensus       157 ~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vw  236 (314)
                      .+....+++ +|+.|+.|++||.+++.....+.... ....+|    ...+.++. |+|+   ++ +|++|+.||.|++|
T Consensus       213 ~~~~~~~l~-~~~~d~~i~i~~~~~~~~~~~~~~~~-~~~~~h----~~~v~~l~-~s~~---~~-~l~s~~~d~~i~iw  281 (388)
T d1erja_         213 SPGDGKYIA-AGSLDRAVRVWDSETGFLVERLDSEN-ESGTGH----KDSVYSVV-FTRD---GQ-SVVSGSLDRSVKLW  281 (388)
T ss_dssp             CSTTCCEEE-EEETTSCEEEEETTTCCEEEEEC-------CCC----SSCEEEEE-ECTT---SS-EEEEEETTSEEEEE
T ss_pred             cCCCCCeEE-EEcCCCeEEEeecccCccceeecccc-ccccCC----CCCEEEEE-ECCC---CC-EEEEEECCCcEEEE
Confidence            554444554 57779999999999988877765211 011123    55788888 9998   55 89999999999999


Q ss_pred             EccCCC-----------CceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEeeee
Q 021291          237 DIRNPG-----------IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFGIG  292 (314)
Q Consensus       237 d~~~~~-----------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~  292 (314)
                      |+++..           ........|...|++++|++++++|++|+.||.|++||+++++.+..+.+
T Consensus       282 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~  348 (388)
T d1erja_         282 NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG  348 (388)
T ss_dssp             EC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             eccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeC
Confidence            997522           23445667899999999999999999999999999999999998876543

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.6e-34  Score=234.17  Aligned_cols=228  Identities=12%  Similarity=0.143  Sum_probs=174.6

Q ss_pred             CCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCe--EEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCC
Q 021291           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE   94 (314)
Q Consensus        17 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~   94 (314)
                      +.++|+|++|+|||++||+|+.||.|+|||..+++  ++..+++|..+  |.+|+|+|  ++++|++++.|++|++||+.
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~--V~~l~fsp--~~~~l~s~s~D~~i~vWd~~   81 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQ--VTGVDWAP--DSNRIVTCGTDRNAYVWTLK   81 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSC--EEEEEEET--TTTEEEEEETTSCEEEEEEE
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCC--EEEEEECC--CCCEEEEEECCCeEEEEeec
Confidence            35789999999999999999999999999998775  66778888855  99999999  99999999999999999998


Q ss_pred             CCCCCCCCeeeeeccee-eEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCe
Q 021291           95 NGGLSSNPSLTIKTNSY-HFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSE  173 (314)
Q Consensus        95 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~  173 (314)
                      ++....  ...+..+.. ..+                                       ++|+|+++.++  +|+.|+.
T Consensus        82 ~~~~~~--~~~~~~~~~~v~~---------------------------------------i~~~p~~~~l~--~~s~d~~  118 (371)
T d1k8kc_          82 GRTWKP--TLVILRINRAARC---------------------------------------VRWAPNEKKFA--VGSGSRV  118 (371)
T ss_dssp             TTEEEE--EEECCCCSSCEEE---------------------------------------EEECTTSSEEE--EEETTSS
T ss_pred             cccccc--ccccccccccccc---------------------------------------cccccccccce--eecccCc
Confidence            764322  111111110 011                                       56899987554  5666899


Q ss_pred             EEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCC------------
Q 021291          174 VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP------------  241 (314)
Q Consensus       174 i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~------------  241 (314)
                      |++|++..........        .........+.++. |+|+   ++ +|++|+.|+.|++||....            
T Consensus       119 i~i~~~~~~~~~~~~~--------~~~~~~~~~v~~v~-~~p~---~~-~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~  185 (371)
T d1k8kc_         119 ISICYFEQENDWWVCK--------HIKKPIRSTVLSLD-WHPN---SV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWG  185 (371)
T ss_dssp             EEEEEEETTTTEEEEE--------EECTTCCSCEEEEE-ECTT---SS-EEEEEETTSCEEEEECCCTTTSCCCCCBTTB
T ss_pred             ceeeeeeccccccccc--------cccccccccccccc-cccc---cc-ceeccccCcEEEEEeeccCcccccccccccc
Confidence            9999987665433332        11122355788888 9998   55 8999999999999998641            


Q ss_pred             -----CCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe-------eeeeeecCCCceece
Q 021291          242 -----GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF-------GIGFVCDQEGNKFGT  304 (314)
Q Consensus       242 -----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~-------~~~~~~~~~~~~~~~  304 (314)
                           +..+....+|...|.+++|+|++++|++++.|+.|++||+.+++.+..       +..+.+++++..++.
T Consensus       186 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~  260 (371)
T d1k8kc_         186 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAA  260 (371)
T ss_dssp             SCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEE
T ss_pred             ccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEE
Confidence                 124556678899999999999999999999999999999999887764       234556677766654

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.6e-33  Score=225.54  Aligned_cols=240  Identities=16%  Similarity=0.201  Sum_probs=182.6

Q ss_pred             eEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCC--eEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH--RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (314)
Q Consensus        11 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v   88 (314)
                      .....+|.+.|.+++|+|++++|++|+.||.|++||+...  +....+..|...  |.+++|+|  ++..+++++.|+.|
T Consensus        90 ~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--v~~~~~~~--~~~~l~s~~~d~~i  165 (337)
T d1gxra_          90 QLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPA--CYALAISP--DSKVCFSCCSDGNI  165 (337)
T ss_dssp             EEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSC--EEEEEECT--TSSEEEEEETTSCE
T ss_pred             EeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccccccccccc--cccccccc--cccccccccccccc
Confidence            3445689999999999999999999999999999998744  556667777744  99999999  99999999999999


Q ss_pred             EEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccCCCceE
Q 021291           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYM  164 (314)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  164 (314)
                      ++||+.++++..  ....+........++.... ........+...+|+++..+.+....  +..    ++|+|+++.++
T Consensus       166 ~~~~~~~~~~~~--~~~~~~~~v~~l~~s~~~~-~~~~~~~d~~v~i~d~~~~~~~~~~~--~~~~i~~l~~~~~~~~l~  240 (337)
T d1gxra_         166 AVWDLHNQTLVR--QFQGHTDGASCIDISNDGT-KLWTGGLDNTVRSWDLREGRQLQQHD--FTSQIFSLGYCPTGEWLA  240 (337)
T ss_dssp             EEEETTTTEEEE--EECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECTTSSEEE
T ss_pred             cccccccccccc--ccccccccccccccccccc-ccccccccccccccccccceeecccc--cccceEEEEEcccccccc
Confidence            999999876533  2222223333333332221 12223334556777777766443221  222    88999987554


Q ss_pred             EEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCc
Q 021291          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (314)
Q Consensus       165 ~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~  244 (314)
                        +|+.|+.+++||+++++.....         .|    ...+.++. |+|+   ++ +|++|+.||.|++||+.+ +++
T Consensus       241 --~~~~d~~i~i~d~~~~~~~~~~---------~~----~~~i~~v~-~s~~---g~-~l~s~s~Dg~i~iwd~~~-~~~  299 (337)
T d1gxra_         241 --VGMESSNVEVLHVNKPDKYQLH---------LH----ESCVLSLK-FAYC---GK-WFVSTGKDNLLNAWRTPY-GAS  299 (337)
T ss_dssp             --EEETTSCEEEEETTSSCEEEEC---------CC----SSCEEEEE-ECTT---SS-EEEEEETTSEEEEEETTT-CCE
T ss_pred             --eecccccccccccccccccccc---------cc----ccccceEE-ECCC---CC-EEEEEeCCCeEEEEECCC-CCE
Confidence              5667899999999988765433         34    44688887 9998   55 899999999999999998 777


Q ss_pred             eEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEec
Q 021291          245 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL  281 (314)
Q Consensus       245 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~  281 (314)
                      +..+. |...|++++|+|++++|++|+.||.|+|||+
T Consensus       300 ~~~~~-~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         300 IFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEEE-CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EEEcc-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            76654 7899999999999999999999999999996

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-32  Score=220.28  Aligned_cols=264  Identities=17%  Similarity=0.303  Sum_probs=185.5

Q ss_pred             CCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC
Q 021291            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (314)
Q Consensus         7 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg   86 (314)
                      +.++.++|+||++.|.+ +++++|++||||+.||+|+|||+.+++++.++.+|...  |.+++|+|    ++|++++.|+
T Consensus         5 ~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~--V~~v~~~~----~~l~s~s~D~   77 (342)
T d2ovrb2           5 ELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG--VWSSQMRD----NIIISGSTDR   77 (342)
T ss_dssp             CCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSC--EEEEEEET----TEEEEEETTS
T ss_pred             CCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCC--EEEEEeCC----Cccccceecc
Confidence            45788999999999865 36668999999999999999999999999999999854  99999988    5999999999


Q ss_pred             eEEEEeCCCCCCCCCCeeeeecceeeE-----------------EEee--------------------eeeccccccccC
Q 021291           87 TVKCWDIENGGLSSNPSLTIKTNSYHF-----------------CKLS--------------------LVKEPYANAKQA  129 (314)
Q Consensus        87 ~v~iwd~~~~~~~~~~~~~~~~~~~~~-----------------~~~~--------------------~~~~~~~~~~~~  129 (314)
                      ++++|+........  ...........                 ..+.                    ............
T Consensus        78 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (342)
T d2ovrb2          78 TLKVWNAETGECIH--TLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAY  155 (342)
T ss_dssp             CEEEEETTTTEEEE--EECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEET
T ss_pred             ccccccccccccee--cccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecC
Confidence            99999987654211  00000000000                 0000                    000001111222


Q ss_pred             CCCcceeeccCCceeeecCCCCCC--ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCcee
Q 021291          130 NEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMC  207 (314)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  207 (314)
                      .+...+++....... ..+.+|..  ..+++++..++  +|+.||.|++||++.++.+..+.        +|    ...+
T Consensus       156 d~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~l~--s~~~dg~i~~~d~~~~~~~~~~~--------~~----~~~v  220 (342)
T d2ovrb2         156 DFMVKVWDPETETCL-HTLQGHTNRVYSLQFDGIHVV--SGSLDTSIRVWDVETGNCIHTLT--------GH----QSLT  220 (342)
T ss_dssp             TSCEEEEEGGGTEEE-EEECCCSSCEEEEEECSSEEE--EEETTSCEEEEETTTCCEEEEEC--------CC----CSCE
T ss_pred             CCeEEEeecccceee-EEEcCcccccccccCCCCEEE--EEeCCCeEEEeecccceeeeEec--------cc----ccce
Confidence            233444555444332 33445555  66677776443  67779999999999999888877        56    3356


Q ss_pred             eeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeec---CCcceEEEEEeCCCCeEEEecCCCcEEEEecCCC
Q 021291          208 MAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV---HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS  284 (314)
Q Consensus       208 ~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~  284 (314)
                      .++. ++++      +|++|+.|+.|++||+.. .+....+..   |...+.++.++++  ++++|+.||.|++||++++
T Consensus       221 ~~~~-~~~~------~l~s~s~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~s~Dg~i~iwd~~tg  290 (342)
T d2ovrb2         221 SGME-LKDN------ILVSGNADSTVKIWDIKT-GQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDLKTG  290 (342)
T ss_dssp             EEEE-EETT------EEEEEETTSCEEEEETTT-CCEEEEECSTTSCSSCEEEEEECSS--EEEEEETTSEEEEEETTTC
T ss_pred             eEEe-cCCC------EEEEEcCCCEEEEEeccc-ccccccccccceeeeceeecccCCC--eeEEEcCCCEEEEEECCCC
Confidence            6665 6654      899999999999999997 666666654   5567777777665  8999999999999999999


Q ss_pred             eeeEee------------eeeeecCCCceece
Q 021291          285 TYVLFG------------IGFVCDQEGNKFGT  304 (314)
Q Consensus       285 ~~~~~~------------~~~~~~~~~~~~~~  304 (314)
                      +.+..+            ..++++|++..+++
T Consensus       291 ~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~  322 (342)
T d2ovrb2         291 EFIRNLVTLESGGSGGVVWRIRASNTKLVCAV  322 (342)
T ss_dssp             CEEEEEEECTTGGGTCEEEEEEECSSEEEEEE
T ss_pred             CEEEEEecccCCCCCCCEEEEEECCCCCEEEE
Confidence            877642            34566777766554

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1e-33  Score=225.04  Aligned_cols=244  Identities=19%  Similarity=0.227  Sum_probs=174.2

Q ss_pred             CCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCe
Q 021291            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (314)
Q Consensus         8 ~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (314)
                      .+++++|+||.++|++++|+|    |+||+.||+|++||+.++     .+.|..  .|.++++++  + ..+++++.|++
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~--~V~~~~~~~--~-~~~~s~s~D~~   68 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSN--LIVSLDNSK--A-QEYSSISWDDT   68 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCS--CEEEEECCS--T-TCCEEEETTTE
T ss_pred             cceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC-----CCCCCC--CEEEEEecC--C-CeEEEEeeccc
Confidence            368999999999999999987    999999999999998754     246774  499999987  5 67899999999


Q ss_pred             EEEEeCCCCCCCCCCee-eeecc----------------------------eeeEEEeeeeeccccccccCCCCcceeec
Q 021291           88 VKCWDIENGGLSSNPSL-TIKTN----------------------------SYHFCKLSLVKEPYANAKQANEPKDCYER  138 (314)
Q Consensus        88 v~iwd~~~~~~~~~~~~-~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (314)
                      |++|++...+....+.. .....                            ......+.+...........+....+|++
T Consensus        69 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~  148 (287)
T d1pgua2          69 LKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKL  148 (287)
T ss_dssp             EEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEET
T ss_pred             cccccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceeeeeec
Confidence            99999865432211110 00000                            00011111111111222233334566666


Q ss_pred             cCCceeeecCCCCCC----ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEec
Q 021291          139 EVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYL  214 (314)
Q Consensus       139 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  214 (314)
                      ............+..    ++|+|++.+++  +|+.||.|++||+.+++.......       +|    ...+.++. |+
T Consensus       149 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~--~g~~dg~i~i~d~~~~~~~~~~~~-------~h----~~~v~~~~-~~  214 (287)
T d1pgua2         149 SDLEVSFDLKTPLRAKPSYISISPSETYIA--AGDVMGKILLYDLQSREVKTSRWA-------FR----TSKINAIS-WK  214 (287)
T ss_dssp             TEEEEEEECSSCCSSCEEEEEECTTSSEEE--EEETTSCEEEEETTTTEEEECCSC-------CC----SSCEEEEE-EC
T ss_pred             cccceeeeeeeccCCceeEEEeccCccccc--cccccccccceeeccccccccccc-------cc----ccccceee-ec
Confidence            554444444444443    89999997554  577799999999998876554321       55    44678887 98


Q ss_pred             CCC-------CCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEec
Q 021291          215 PSK-------SQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL  281 (314)
Q Consensus       215 p~~-------~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~  281 (314)
                      |..       .++. ++++|+.|+.|++||++++.+.+..+.+|...|++++|++++ .|+|++.||.|++|++
T Consensus       215 p~~~~~~~~~~~~~-~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         215 PAEKGANEEEIEED-LVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             CCC------CCSCC-EEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             ccccccccccCCCC-eeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            863       2244 899999999999999988677888888999999999999987 4889999999999996

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.5e-33  Score=228.54  Aligned_cols=253  Identities=21%  Similarity=0.335  Sum_probs=179.6

Q ss_pred             ecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeC
Q 021291           14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI   93 (314)
Q Consensus        14 l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~   93 (314)
                      ..+|...|++++|+|++++|++|+.||.|++||..+++.+..+.+|...  |.+++|++  ++..+++++.++.+++||.
T Consensus       117 ~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~--v~~~~~~~--~~~~~~~~~~~~~i~~~d~  192 (388)
T d1erja_         117 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQD--IYSLDYFP--SGDKLVSGSGDRTVRIWDL  192 (388)
T ss_dssp             --CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC--EEEEEECT--TSSEEEEEETTSEEEEEET
T ss_pred             ccCCCCCEEEEEECCCCCcceeccccccccccccccccccccccccccc--cccccccc--ccccccccccceeeeeeec
Confidence            3468888999999999999999999999999999999999999999855  99999999  8899999999999999999


Q ss_pred             CCCCCCCCCeeeeecc-eeeEEEeeeeeccccccccCCCCcceeeccCCceeee------cCCCCCC----ceeccCCCc
Q 021291           94 ENGGLSSNPSLTIKTN-SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDT------DSLCDSK----DDVPAEGPK  162 (314)
Q Consensus        94 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~----~~~~~~~~~  162 (314)
                      ++.....    ..... ......+..............+...+++.........      ...+|..    ++|+|+++.
T Consensus       193 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~  268 (388)
T d1erja_         193 RTGQCSL----TLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS  268 (388)
T ss_dssp             TTTEEEE----EEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSE
T ss_pred             ccccccc----ccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCE
Confidence            8875422    22222 1122222222222222334445667777766553322      2234544    889999875


Q ss_pred             eEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCC
Q 021291          163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG  242 (314)
Q Consensus       163 ~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~  242 (314)
                      ++  +++.|+.|++||++++........................+.++. |+|+   ++ +|++|+.||.|++||+++ +
T Consensus       269 l~--s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~---~~-~l~sg~~dg~i~vwd~~~-~  340 (388)
T d1erja_         269 VV--SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVA-TTQN---DE-YILSGSKDRGVLFWDKKS-G  340 (388)
T ss_dssp             EE--EEETTSEEEEEEC---------------CEEEEEECCSSCEEEEE-ECGG---GC-EEEEEETTSEEEEEETTT-C
T ss_pred             EE--EEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEE-ECCC---CC-EEEEEeCCCEEEEEECCC-C
Confidence            44  567799999999987654332221000000000011245788887 9998   44 899999999999999998 8


Q ss_pred             CceEeeecCCcceEEEEE------eCCCCeEEEecCCCcEEEEecC
Q 021291          243 IPLTAMKVHLEPVLCLSI------DESCNGGISGGADQKIVLYNLD  282 (314)
Q Consensus       243 ~~~~~~~~h~~~v~~~~~------~~~~~~l~s~s~dg~i~iw~~~  282 (314)
                      +++.++.+|.+.|+++++      +|++.+|+||+.||.|+||+++
T Consensus       341 ~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         341 NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             cEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            999999999999999986      6789999999999999999985

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.2e-32  Score=218.71  Aligned_cols=276  Identities=13%  Similarity=0.054  Sum_probs=181.1

Q ss_pred             CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEE---EEEeccCCcccEEEEEEcccCCCCeEEEeecC
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV---SSSWVHSAAHGIVSVATGPSIGLNKVISQGRD   85 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (314)
                      +.++.+++|++.|++|+|+|++++||+|+.||+|+|||++++...   .....|.  .+|.+++|+|. ++.+|++|+.|
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~--~~V~~v~f~~~-~~~~l~sg~~d   78 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYK--HPLLCCNFIDN-TDLQIYVGTVQ   78 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECS--SCEEEEEEEES-SSEEEEEEETT
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCC--CCEEEEEEeCC-CCCEEEEcccc
Confidence            467888999999999999999999999999999999998765432   2333577  45999999982 24589999999


Q ss_pred             CeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCc---eeeecCCCCCC------cee
Q 021291           86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE---TVDTDSLCDSK------DDV  156 (314)
Q Consensus        86 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~------~~~  156 (314)
                      |+|++|++.......  ................................+|+++...   ........+..      ..+
T Consensus        79 ~~v~~w~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (342)
T d1yfqa_          79 GEILKVDLIGSPSFQ--ALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTM  156 (342)
T ss_dssp             SCEEEECSSSSSSEE--ECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEE
T ss_pred             cceeeeecccccccc--cccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeee
Confidence            999999998775432  1111111222222222222233333444556666654322   22222222211      456


Q ss_pred             ccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEE
Q 021291          157 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW  236 (314)
Q Consensus       157 ~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vw  236 (314)
                      .+.+..++  +++.|+.|++||++..+.......        ... ......+.. +.|..  +. .+++++.||.+.+|
T Consensus       157 ~~~~~~~~--~~~~d~~i~~~~~~~~~~~~~~~~--------~~~-~~~~~~~~~-~~~~~--~~-~~~~~s~dg~~~v~  221 (342)
T d1yfqa_         157 DTNSSRLI--VGMNNSQVQWFRLPLCEDDNGTIE--------ESG-LKYQIRDVA-LLPKE--QE-GYACSSIDGRVAVE  221 (342)
T ss_dssp             EECSSEEE--EEESTTEEEEEESSCCTTCCCEEE--------ECS-CSSCEEEEE-ECSGG--GC-EEEEEETTSEEEEE
T ss_pred             eccCCcee--eecCCCcEEEEecccCcccceeee--------ecc-cccceeeeE-eecCC--CC-EEEeecCCCeEEEE
Confidence            67766444  566789999999987765443331        111 122344444 44441  33 89999999999999


Q ss_pred             EccCCCCc--------------eEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEeee------eeeec
Q 021291          237 DIRNPGIP--------------LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFGI------GFVCD  296 (314)
Q Consensus       237 d~~~~~~~--------------~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~------~~~~~  296 (314)
                      +.......              .....+|...|++|+|+|++.+|+||+.||.|++||+++++.+....      -.+++
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s  301 (342)
T d1yfqa_         222 FFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA  301 (342)
T ss_dssp             ECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE
T ss_pred             EecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEEE
Confidence            98642211              11123566789999999999999999999999999999998887531      13445


Q ss_pred             CCCceece
Q 021291          297 QEGNKFGT  304 (314)
Q Consensus       297 ~~~~~~~~  304 (314)
                      +++..++.
T Consensus       302 ~~~~~l~~  309 (342)
T d1yfqa_         302 CSDNILCL  309 (342)
T ss_dssp             ECSSEEEE
T ss_pred             eCCCEEEE
Confidence            56655554

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.2e-31  Score=211.98  Aligned_cols=251  Identities=14%  Similarity=0.159  Sum_probs=182.3

Q ss_pred             CCceEEecCCC-CceeEEEEcc--CCCEEEEecCCCeEEEEeCCCCeE--------EEEEeccCCcccEEEEEEcccCCC
Q 021291            8 PDPVAVLRGHR-ASVTDVCFHQ--TKPILFAGTTGGELRIWDTVQHRT--------VSSSWVHSAAHGIVSVATGPSIGL   76 (314)
Q Consensus         8 ~~~~~~l~~h~-~~v~~~~~~~--~~~~l~s~~~dg~v~iwd~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~   76 (314)
                      ...+..+.+|. ..|++++|+|  ++++|++|+.||+|+|||+..++.        ...+..|.  .+|.+++|++  ++
T Consensus        52 ~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~--~~v~~v~~s~--~~  127 (325)
T d1pgua1          52 VPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLA--GPISDISWDF--EG  127 (325)
T ss_dssp             SCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCS--SCEEEEEECT--TS
T ss_pred             ccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeeccccccccccc--CcEEEEEECC--CC
Confidence            35677888884 6899999998  678999999999999999865432        22344566  4599999999  99


Q ss_pred             CeEEEeec--CCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeee--cCCCCC
Q 021291           77 NKVISQGR--DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDT--DSLCDS  152 (314)
Q Consensus        77 ~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  152 (314)
                      ++|++++.  ++.+++|+.++++...  .+..+......+.+.+............+...+|+....+....  ....|.
T Consensus       128 ~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~  205 (325)
T d1pgua1         128 RRLCVVGEGRDNFGVFISWDSGNSLG--EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQG  205 (325)
T ss_dssp             SEEEEEECCSSCSEEEEETTTCCEEE--ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTT
T ss_pred             CccceeeccccceEEEEeecccccce--eeeecccccccccccccccceEEEeecccccccccccccccceecccccCCC
Confidence            98887654  6789999999876543  22233444455555554433334444556677777766554333  233444


Q ss_pred             C----ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEee
Q 021291          153 K----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY  228 (314)
Q Consensus       153 ~----~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~  228 (314)
                      .    ++|+|++..+++ +++.|+.|++||+++++.+..+.        +|.......++++. |. +   |+ +|++++
T Consensus       206 ~~v~~v~~~pd~~~~l~-s~~~d~~i~iwd~~~~~~~~~l~--------~~~~~v~~~~~s~~-~~-d---g~-~l~s~s  270 (325)
T d1pgua1         206 SFVRDVEFSPDSGEFVI-TVGSDRKISCFDGKSGEFLKYIE--------DDQEPVQGGIFALS-WL-D---SQ-KFATVG  270 (325)
T ss_dssp             CCEEEEEECSTTCCEEE-EEETTCCEEEEETTTCCEEEECC--------BTTBCCCSCEEEEE-ES-S---SS-EEEEEE
T ss_pred             CccEEeeeccccceecc-ccccccceeeeeecccccccccc--------ccccccccceeeee-cc-C---CC-EEEEEe
Confidence            4    889998766665 56669999999999999999888        77776776666654 53 3   55 899999


Q ss_pred             cCCcEEEEEccCCCCceEeeecCCcc--eEE--EEEeCCCCeEEEecCCCcEEEEec
Q 021291          229 EDGSILVWDIRNPGIPLTAMKVHLEP--VLC--LSIDESCNGGISGGADQKIVLYNL  281 (314)
Q Consensus       229 ~dg~i~vwd~~~~~~~~~~~~~h~~~--v~~--~~~~~~~~~l~s~s~dg~i~iw~~  281 (314)
                      .|+.|+|||+++ ++++..+..|...  +..  +.+.+++ +|+++|.||.|++||+
T Consensus       271 ~D~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         271 ADATIRVWDVTT-SKCVQKWTLDKQQLGNQQVGVVATGNG-RIISLSLDGTLNFYEL  325 (325)
T ss_dssp             TTSEEEEEETTT-TEEEEEEECCTTCGGGCEEEEEEEETT-EEEEEETTSCEEEEET
T ss_pred             CCCeEEEEECCC-CCEEEEEEecCCcccCeEEEEEECCCC-EEEEEECCCEEEEEEC
Confidence            999999999998 8888887766553  334  4445444 6899999999999996

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2e-31  Score=219.61  Aligned_cols=226  Identities=16%  Similarity=0.094  Sum_probs=163.3

Q ss_pred             CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEE--eccCCcccEEEEEEcccCCCCeEEEeecCC
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSS--WVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg   86 (314)
                      ..+..|++|.++|++++|+|++++|++|+.|++|+|||+.++.....+  ..|.  ..|.+++|+|  +++.|++++.|+
T Consensus        42 ~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~--~~v~~i~~~p--~~~~l~~~s~d~  117 (371)
T d1k8kc_          42 VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRIN--RAARCVRWAP--NEKKFAVGSGSR  117 (371)
T ss_dssp             EEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCS--SCEEEEEECT--TSSEEEEEETTS
T ss_pred             EEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccccccccccc--cccccccccc--ccccceeecccC
Confidence            367889999999999999999999999999999999999887655444  4455  5599999999  999999999999


Q ss_pred             eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEE
Q 021291           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV  166 (314)
Q Consensus        87 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (314)
                      +|++|+++......  ..............+                                    ++|+|+++.++  
T Consensus       118 ~i~i~~~~~~~~~~--~~~~~~~~~~~~v~~------------------------------------v~~~p~~~~l~--  157 (371)
T d1k8kc_         118 VISICYFEQENDWW--VCKHIKKPIRSTVLS------------------------------------LDWHPNSVLLA--  157 (371)
T ss_dssp             SEEEEEEETTTTEE--EEEEECTTCCSCEEE------------------------------------EEECTTSSEEE--
T ss_pred             cceeeeeecccccc--ccccccccccccccc------------------------------------cccccccccee--
Confidence            99999987654311  101000000000000                                    56899987543  


Q ss_pred             eecCcCeEEEEecCCCceeeeecccccCCC------CCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccC
Q 021291          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGS------PNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (314)
Q Consensus       167 ~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~------~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~  240 (314)
                      +|+.|++|++||..................      ..........+.+++ |+|+   |+ +|++++.|+.|++||+..
T Consensus       158 s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~---g~-~l~s~~~d~~i~iwd~~~  232 (371)
T d1k8kc_         158 AGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVC-FSAN---GS-RVAWVSHDSTVCLADADK  232 (371)
T ss_dssp             EEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEE-ECSS---SS-EEEEEETTTEEEEEEGGG
T ss_pred             ccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEE-eecc---cc-cccccccCCcceEEeeec
Confidence            677799999999875432111110000000      000111245678887 9998   55 899999999999999998


Q ss_pred             CCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCe
Q 021291          241 PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST  285 (314)
Q Consensus       241 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~  285 (314)
                       +..+..+..|..+|.+++|++++++|++|+ |+.+++|..+...
T Consensus       233 -~~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~  275 (371)
T d1k8kc_         233 -KMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAA  275 (371)
T ss_dssp             -TTEEEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTT
T ss_pred             -ccceeeeecccccceeeeecCCCCEEEEEc-CCceEEEEeeCCC
Confidence             888999999999999999999998877665 7777777665443

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.1e-31  Score=213.17  Aligned_cols=246  Identities=18%  Similarity=0.272  Sum_probs=176.5

Q ss_pred             eEEecCCCCce-eEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEE
Q 021291           11 VAVLRGHRASV-TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (314)
Q Consensus        11 ~~~l~~h~~~v-~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~   89 (314)
                      ..+|+||.+.| +|++|  ++++|+||+.||+|+|||+.+++++.++.+|...  |.+++|+|  + ++|++|+.|++|+
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~--V~~l~~s~--~-~~l~s~s~D~~i~   77 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGG--VWALKYAH--G-GILVSGSTDRTVR   77 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSC--EEEEEEET--T-TEEEEEETTCCEE
T ss_pred             cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCC--EEEEEEcC--C-CEEEEEecccccc
Confidence            45799999886 56655  6789999999999999999999999999999855  99999998  6 6899999999999


Q ss_pred             EEeCCCCCCCCCCeeeeecceeeEEEeeeeecc---ccccccCCCCcceeeccCCceeeec-------------------
Q 021291           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEP---YANAKQANEPKDCYEREVGETVDTD-------------------  147 (314)
Q Consensus        90 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-------------------  147 (314)
                      +|++...+...    .................+   ........+...+|++.........                   
T Consensus        78 iw~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (355)
T d1nexb2          78 VWDIKKGCCTH----VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYF  153 (355)
T ss_dssp             EEETTTTEEEE----EECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTE
T ss_pred             ccccccccccc----ccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccce
Confidence            99998875432    111111111111111111   1122233344556665443221111                   


Q ss_pred             ---CCCCCC--ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCce
Q 021291          148 ---SLCDSK--DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFV  222 (314)
Q Consensus       148 ---~~~~~~--~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~  222 (314)
                         ...|..  ..+.++++.+ + .+..|+.|++||+++++.+....        ++    .....++. |+|+   +. 
T Consensus       154 ~~~~~~~~~~v~~~~~~~~~~-~-~~~~d~~i~~~d~~~~~~~~~~~--------~~----~~~~~~~~-~~~~---~~-  214 (355)
T d1nexb2         154 VGVLRGHMASVRTVSGHGNIV-V-SGSYDNTLIVWDVAQMKCLYILS--------GH----TDRIYSTI-YDHE---RK-  214 (355)
T ss_dssp             EEEEECCSSCEEEEEEETTEE-E-EEETTSCEEEEETTTTEEEEEEC--------CC----SSCEEEEE-EETT---TT-
T ss_pred             eeeeeecccccccccccccee-e-eecccceeeeeecccccceeeee--------cc----cccccccc-cccc---ce-
Confidence               011111  3344556533 3 56678999999999998887776        33    33566666 9987   44 


Q ss_pred             EEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291          223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF  289 (314)
Q Consensus       223 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~  289 (314)
                      ++++++.|+.|++||.++ +.++..+.+|...|.+++++++  +|++++.||.|++||++++.+...
T Consensus       215 ~~~~~~~d~~i~i~d~~~-~~~~~~~~~h~~~v~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~  278 (355)
T d1nexb2         215 RCISASMDTTIRIWDLEN-GELMYTLQGHTALVGLLRLSDK--FLVSAAADGSIRGWDANDYSRKFS  278 (355)
T ss_dssp             EEEEEETTSCEEEEETTT-CCEEEEECCCSSCCCEEEECSS--EEEEECTTSEEEEEETTTCCEEEE
T ss_pred             eeecccccceEEeeeccc-cccccccccccccccccccccc--eeeeeecccccccccccccceecc
Confidence            899999999999999998 8889999999999999999865  899999999999999998876653

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=4.5e-30  Score=207.63  Aligned_cols=253  Identities=15%  Similarity=0.093  Sum_probs=178.2

Q ss_pred             ceeEEEEccCCCEEEEecCCC-eEEEEeCCCC--eEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCC
Q 021291           20 SVTDVCFHQTKPILFAGTTGG-ELRIWDTVQH--RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG   96 (314)
Q Consensus        20 ~v~~~~~~~~~~~l~s~~~dg-~v~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~   96 (314)
                      .+++++|+|+++.|+.++.+. .|+.|+....  .....+.+|.. ..|++++|+|..++.+|++|+.||+|+|||+..+
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~-~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~   97 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGS-SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD   97 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTT-SCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCC-CCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCC
Confidence            468999999999999876554 3566765443  44666777743 4599999998556789999999999999999876


Q ss_pred             CCCCCCeee------eecceeeEEEeeeeecccccccc-CCCCcceeeccCCceeeecCCCCCC----ceeccCCCceEE
Q 021291           97 GLSSNPSLT------IKTNSYHFCKLSLVKEPYANAKQ-ANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMA  165 (314)
Q Consensus        97 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~  165 (314)
                      +........      ....+.....++........... .......+....... ...+.+|..    ++|+|+++.+++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~~  176 (325)
T d1pgua1          98 KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNS-LGEVSGHSQRINACHLKQSRPMRSM  176 (325)
T ss_dssp             GGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCE-EEECCSCSSCEEEEEECSSSSCEEE
T ss_pred             cceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeeccccc-ceeeeecccccccccccccccceEE
Confidence            554311111      11112222223222221111111 122344555555443 334556665    889999887665


Q ss_pred             EeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCce
Q 021291          166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL  245 (314)
Q Consensus       166 ~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~  245 (314)
                       +++.|+.+++||.+..+....+.        .+. .....+.+++ |+|+.  +. ++++++.|+.|++||+++ ++++
T Consensus       177 -~~~~d~~v~~~d~~~~~~~~~~~--------~~~-~~~~~v~~v~-~~pd~--~~-~l~s~~~d~~i~iwd~~~-~~~~  241 (325)
T d1pgua1         177 -TVGDDGSVVFYQGPPFKFSASDR--------THH-KQGSFVRDVE-FSPDS--GE-FVITVGSDRKISCFDGKS-GEFL  241 (325)
T ss_dssp             -EEETTTEEEEEETTTBEEEEEEC--------SSS-CTTCCEEEEE-ECSTT--CC-EEEEEETTCCEEEEETTT-CCEE
T ss_pred             -Eeecccccccccccccccceecc--------ccc-CCCCccEEee-ecccc--ce-eccccccccceeeeeecc-cccc
Confidence             56669999999999887766655        221 2355788887 99973  33 899999999999999998 8889


Q ss_pred             EeeecCCcceEEEEEe---CCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291          246 TAMKVHLEPVLCLSID---ESCNGGISGGADQKIVLYNLDHSTYVLF  289 (314)
Q Consensus       246 ~~~~~h~~~v~~~~~~---~~~~~l~s~s~dg~i~iw~~~~~~~~~~  289 (314)
                      ..+.+|..++.++.|+   +++++|++++.|+.|+|||+++++.+..
T Consensus       242 ~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~  288 (325)
T d1pgua1         242 KYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQK  288 (325)
T ss_dssp             EECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             ccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEE
Confidence            9999999888777765   7889999999999999999999987765

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=1.4e-29  Score=210.05  Aligned_cols=263  Identities=17%  Similarity=0.198  Sum_probs=171.2

Q ss_pred             eEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCe------EEEEEeccCCcccEEEE------EEcccCCCCe
Q 021291           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR------TVSSSWVHSAAHGIVSV------ATGPSIGLNK   78 (314)
Q Consensus        11 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~------~~~~~~~~~~~~~v~~~------~~~~~~~~~~   78 (314)
                      ....++|.+.|.++++++  ++|+||+.|++|+|||..+.+      .......|.  ..+..+      ..... +...
T Consensus         7 ~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~   81 (393)
T d1sq9a_           7 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHK--SGLHHVDVLQAIERDAF-ELCL   81 (393)
T ss_dssp             EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCT--TCEEEEEEEEEEETTTE-EEEE
T ss_pred             eecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeecc--CCceEeeeEeeeccCCC-CCcE
Confidence            356789999999999864  689999999999999976543      122222333  112222      22211 2346


Q ss_pred             EEEeecCCeEEEEeCCCCCCCCCCeee--------eecceeeEEEeeeeec----cccccccCCCCcceeeccCCc----
Q 021291           79 VISQGRDGTVKCWDIENGGLSSNPSLT--------IKTNSYHFCKLSLVKE----PYANAKQANEPKDCYEREVGE----  142 (314)
Q Consensus        79 l~s~~~dg~v~iwd~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~----  142 (314)
                      +++++.||.|++|++............        ..........+.....    .........+...+|++....    
T Consensus        82 ~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~  161 (393)
T d1sq9a_          82 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN  161 (393)
T ss_dssp             EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred             EEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccc
Confidence            779999999999998765433211100        0011111112221111    111223334455556553211    


Q ss_pred             -------------eeeecCCCCCC----ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCc
Q 021291          143 -------------TVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRG  205 (314)
Q Consensus       143 -------------~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~  205 (314)
                                   ........+..    ++|+|++  ++ ++|+.|++|++||+++++.+..+....  ...+|    ..
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~l-asgs~Dg~i~iwd~~~~~~~~~~~~~~--~l~~h----~~  232 (393)
T d1sq9a_         162 SLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LI-ATGFNNGTVQISELSTLRPLYNFESQH--SMINN----SN  232 (393)
T ss_dssp             HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EE-EEECTTSEEEEEETTTTEEEEEEECCC-----CC----CC
T ss_pred             eeeeeeccceecccceecccCCCCcEEEEEECCCC--EE-EEEeCCCcEEEEeeccccccccccccc--ccccc----cc
Confidence                         00111111211    7888987  34 478889999999999998877765311  11134    55


Q ss_pred             eeeeEEEecCCCCCCceEEEEeecCCc---EEEEEccCCCCceEee-------------ecCCcceEEEEEeCCCCeEEE
Q 021291          206 MCMAVQAYLPSKSQGFVNVLAGYEDGS---ILVWDIRNPGIPLTAM-------------KVHLEPVLCLSIDESCNGGIS  269 (314)
Q Consensus       206 ~~~~~~~~~p~~~~g~~~l~~g~~dg~---i~vwd~~~~~~~~~~~-------------~~h~~~v~~~~~~~~~~~l~s  269 (314)
                      .+.+++ |+|+   |+ +|++|+.|++   |++||+++ ++++..+             .+|...|++|+|+|++++|+|
T Consensus       233 ~V~~l~-~spd---g~-~l~sgs~D~t~~~i~lwd~~~-g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S  306 (393)
T d1sq9a_         233 SIRSVK-FSPQ---GS-LLAIAHDSNSFGCITLYETEF-GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS  306 (393)
T ss_dssp             CEEEEE-ECSS---TT-EEEEEEEETTEEEEEEEETTT-CCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEE
T ss_pred             eEEEcc-cccc---cc-eeeeecCCCCcceeeeccccc-ceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEE
Confidence            788998 9998   55 8999998874   99999997 6666655             379999999999999999999


Q ss_pred             ecCCCcEEEEecCCCeeeEeeeee
Q 021291          270 GGADQKIVLYNLDHSTYVLFGIGF  293 (314)
Q Consensus       270 ~s~dg~i~iw~~~~~~~~~~~~~~  293 (314)
                      ||.|++|++||+++++.+..+.+|
T Consensus       307 ~s~D~~v~vWd~~~g~~~~~l~gH  330 (393)
T d1sq9a_         307 AGWDGKLRFWDVKTKERITTLNMH  330 (393)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECC
T ss_pred             ECCCCEEEEEECCCCCEEEEECCc
Confidence            999999999999999998876654

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=1e-29  Score=206.00  Aligned_cols=212  Identities=17%  Similarity=0.247  Sum_probs=162.8

Q ss_pred             CCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCe----EEEEEeccC----------------------
Q 021291            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR----TVSSSWVHS----------------------   60 (314)
Q Consensus         7 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~----~~~~~~~~~----------------------   60 (314)
                      .++.++.+.+|...|.+++|+|+++++++|+.|+.+++|+.....    ....+.+|.                      
T Consensus        86 ~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (340)
T d1tbga_          86 TTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT  165 (340)
T ss_dssp             TTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTE
T ss_pred             cceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceeccccccccccccccccccccccccccc
Confidence            456788999999999999999999999999999999999965421    222221111                      


Q ss_pred             -----------------CcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccc
Q 021291           61 -----------------AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY  123 (314)
Q Consensus        61 -----------------~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (314)
                                       ....+....+.+  ...++++++.|+.|++||+++++...    .+..+......        
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~v~i~d~~~~~~~~----~~~~h~~~i~~--------  231 (340)
T d1tbga_         166 CALWDIETGQQTTTFTGHTGDVMSLSLAP--DTRLFVSGACDASAKLWDVREGMCRQ----TFTGHESDINA--------  231 (340)
T ss_dssp             EEEEETTTTEEEEEEECCSSCEEEEEECT--TSSEEEEEETTTEEEEEETTTTEEEE----EECCCSSCEEE--------
T ss_pred             ccccccccccccccccccceeEeeecccc--ccceeEEeecCceEEEEECCCCcEEE----EEeCCCCCeEE--------
Confidence                             112366666666  77788888888899999888765422    22211111000        


Q ss_pred             cccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCC
Q 021291          124 ANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKG  203 (314)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~  203 (314)
                                                    ++|+|+++.++  +|+.|+.|++||++.......+...      .    .
T Consensus       232 ------------------------------v~~~p~~~~l~--s~s~d~~i~~~~~~~~~~~~~~~~~------~----~  269 (340)
T d1tbga_         232 ------------------------------ICFFPNGNAFA--TGSDDATCRLFDLRADQELMTYSHD------N----I  269 (340)
T ss_dssp             ------------------------------EEECTTSSEEE--EEETTSCEEEEETTTTEEEEEECCT------T----C
T ss_pred             ------------------------------EEECCCCCEEE--EEeCCCeEEEEeecccccccccccc------c----c
Confidence                                          56889887543  5667999999999998887766521      1    2


Q ss_pred             CceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEe
Q 021291          204 RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN  280 (314)
Q Consensus       204 ~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~  280 (314)
                      ...+.++. |+|+   ++ +|++|+.||.|++||+.+ ++++..+.+|..+|++++|+|++.+|+|||.||.|+|||
T Consensus       270 ~~~i~~~~-~s~~---~~-~l~~g~~dg~i~iwd~~~-~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         270 ICGITSVS-FSKS---GR-LLLAGYDDFNCNVWDALK-ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CSCEEEEE-ECSS---SC-EEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             cCceEEEE-ECCC---CC-EEEEEECCCEEEEEECCC-CcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            34577887 9998   55 899999999999999998 899999999999999999999999999999999999997

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.1e-28  Score=195.41  Aligned_cols=238  Identities=18%  Similarity=0.285  Sum_probs=171.5

Q ss_pred             CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v   88 (314)
                      +.++.+.+|...|+|++|  |+++||||+.||+|+|||+++++++.++.+|...  |.+++|.+    ++|++|+.|+.|
T Consensus         6 ~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~--V~~v~~~~----~~l~s~s~D~~i   77 (293)
T d1p22a2           6 QRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGS--VLCLQYDE----RVIITGSSDSTV   77 (293)
T ss_dssp             CCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSC--EEEEECCS----SEEEEEETTSCE
T ss_pred             EEEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCC--Eeeeeccc----ceeecccccccc
Confidence            456677789999999765  7899999999999999999999999999999855  99998754    799999999999


Q ss_pred             EEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCc--eeeecCCCCCC--ceeccCCCceE
Q 021291           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE--TVDTDSLCDSK--DDVPAEGPKYM  164 (314)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~  164 (314)
                      ++|++..+....    ............. ................+|+.....  .....+..|..  ..+.+....++
T Consensus        78 ~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  152 (293)
T d1p22a2          78 RVWDVNTGEMLN----TLIHHCEAVLHLR-FNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIV  152 (293)
T ss_dssp             EEEESSSCCEEE----EECCCCSCEEEEE-CCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEE
T ss_pred             cccccccccccc----ccccccccccccc-ccccceeecccccceeEeeccccccccccccccccccccccceecccccc
Confidence            999999875422    2222111111111 111222233344455566655443  22333444444  33334444333


Q ss_pred             EEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCc
Q 021291          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (314)
Q Consensus       165 ~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~  244 (314)
                        +++.|+.|++||+++++.+..+.        ++.    ..+..+. +++.      ++++++.||.|++||+++ ...
T Consensus       153 --~~s~d~~i~~~d~~~~~~~~~~~--------~~~----~~v~~~~-~~~~------~l~~~~~dg~i~i~d~~~-~~~  210 (293)
T d1p22a2         153 --SASGDRTIKVWNTSTCEFVRTLN--------GHK----RGIACLQ-YRDR------LVVSGSSDNTIRLWDIEC-GAC  210 (293)
T ss_dssp             --EEETTSEEEEEETTTCCEEEEEE--------CCS----SCEEEEE-EETT------EEEEEETTSCEEEEETTT-CCE
T ss_pred             --cccCCCceeeecCCCCcEEEEEc--------ccc----ccccccc-CCCC------eEEEecCCCEEEEEeccc-cee
Confidence              45568999999999999888887        442    2455554 6543      899999999999999998 888


Q ss_pred             eEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCC
Q 021291          245 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH  283 (314)
Q Consensus       245 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~  283 (314)
                      +....+|...+..+  .+++.+|++|+.||.|++||+..
T Consensus       211 ~~~~~~~~~~v~~~--~~~~~~l~sg~~dg~i~iwd~~~  247 (293)
T d1p22a2         211 LRVLEGHEELVRCI--RFDNKRIVSGAYDGKIKVWDLVA  247 (293)
T ss_dssp             EEEECCCSSCEEEE--ECCSSEEEEEETTSCEEEEEHHH
T ss_pred             eeeecccceeeeec--cccceEEEEEcCCCEEEEEECCC
Confidence            88899998888764  45667999999999999999754

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.7e-28  Score=199.60  Aligned_cols=253  Identities=16%  Similarity=0.219  Sum_probs=176.5

Q ss_pred             CCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC
Q 021291            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (314)
Q Consensus         7 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg   86 (314)
                      .++++++|++|.++|++++|+|+ .+|++|+.||+|++|+....+.............+....+.+  ++..+++++.|+
T Consensus        42 ~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~  118 (355)
T d1nexb2          42 NKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK--NIKYIVTGSRDN  118 (355)
T ss_dssp             TTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEET--TEEEEEEEETTS
T ss_pred             CCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccccccccccccccccccccccccccccc--ccceeeeecCCC
Confidence            45789999999999999999985 589999999999999999998887776665544466677777  888999999999


Q ss_pred             eEEEEeCCCCCCCCCCee------eee-------------cceeeEEEeeeeeccccccccCCCCcceeeccCCceeeec
Q 021291           87 TVKCWDIENGGLSSNPSL------TIK-------------TNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTD  147 (314)
Q Consensus        87 ~v~iwd~~~~~~~~~~~~------~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (314)
                      .|++||+.+.........      ...             .+......... ................|++...+.....
T Consensus       119 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~d~~i~~~d~~~~~~~~~~  197 (355)
T d1nexb2         119 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG-HGNIVVSGSYDNTLIVWDVAQMKCLYIL  197 (355)
T ss_dssp             EEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEE-ETTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             cEEEEEccCCceeccccccceeccceeccccccceeeeeeecccccccccc-ccceeeeecccceeeeeecccccceeee
Confidence            999999987654321000      000             00000000111 1111222333455666777666554433


Q ss_pred             CCCCCC---ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEE
Q 021291          148 SLCDSK---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNV  224 (314)
Q Consensus       148 ~~~~~~---~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l  224 (314)
                      ......   ..++++++.++  +++.|+.|++||.+++..+..+.        +|..    .+.++. ++|+      +|
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~--~~~~d~~i~i~d~~~~~~~~~~~--------~h~~----~v~~~~-~~~~------~l  256 (355)
T d1nexb2         198 SGHTDRIYSTIYDHERKRCI--SASMDTTIRIWDLENGELMYTLQ--------GHTA----LVGLLR-LSDK------FL  256 (355)
T ss_dssp             CCCSSCEEEEEEETTTTEEE--EEETTSCEEEEETTTCCEEEEEC--------CCSS----CCCEEE-ECSS------EE
T ss_pred             eccccccccccccccceeee--cccccceEEeeeccccccccccc--------cccc----cccccc-cccc------ee
Confidence            323233   78889887554  56679999999999999998888        6744    566776 8765      89


Q ss_pred             EEeecCCcEEEEEccCCCCceEeeecCCcceEEEE-EeCCCCeEEEecCCCcEEEEecCCCeeeE
Q 021291          225 LAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLS-IDESCNGGISGGADQKIVLYNLDHSTYVL  288 (314)
Q Consensus       225 ~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~-~~~~~~~l~s~s~dg~i~iw~~~~~~~~~  288 (314)
                      ++|+.||.|++||+++ ..  ..+..|...+.++. +++++.+|++| .||.|++||+++++.+.
T Consensus       257 ~~~~~dg~i~iwd~~~-~~--~~~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~  317 (355)
T d1nexb2         257 VSAAADGSIRGWDAND-YS--RKFSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVH  317 (355)
T ss_dssp             EEECTTSEEEEEETTT-CC--EEEEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCC
T ss_pred             eeeecccccccccccc-cc--eecccccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEE
Confidence            9999999999999987 33  34556777777665 47777766655 58999999999988764

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=5.1e-27  Score=187.66  Aligned_cols=236  Identities=17%  Similarity=0.230  Sum_probs=165.3

Q ss_pred             EEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccc
Q 021291           44 IWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY  123 (314)
Q Consensus        44 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (314)
                      .|.. ......++++|...  |++|+|+|  ++++|+||+.||+|+|||+++++++.  .+..+........+++.....
T Consensus         2 ~w~p-~~~~~~~L~GH~~~--I~~l~~sp--~~~~l~s~s~Dg~i~iWd~~~~~~~~--~~~~h~~~V~~~~~~~~~~~~   74 (317)
T d1vyhc1           2 EWIP-RPPEKYALSGHRSP--VTRVIFHP--VFSVMVSASEDATIKVWDYETGDFER--TLKGHTDSVQDISFDHSGKLL   74 (317)
T ss_dssp             CCCC-CSSCSCEEECCSSC--EEEEEECS--SSSEEEEEESSSCEEEEETTTCCCCE--EECCCSSCEEEEEECTTSSEE
T ss_pred             ccCC-CCCccEEEcCCCCC--eEEEEEcC--CCCEEEEEeCCCeEEEEECCCCCEEE--EEeCCCCcEEEEeeecccccc
Confidence            3543 23445678999955  99999999  99999999999999999999887654  233223333222222111100


Q ss_pred             -----------------------------------------cccccCCCCcceeeccCCceeeecCCCCCC----ceecc
Q 021291          124 -----------------------------------------ANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPA  158 (314)
Q Consensus       124 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  158 (314)
                                                               ...........+|++....... .+.+|..    ++|++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  153 (317)
T d1vyhc1          75 ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK-TFTGHREWVRMVRPNQ  153 (317)
T ss_dssp             EEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE-EEECCSSCEEEEEECT
T ss_pred             cccccccccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeee-EEccCCCcceeeeccc
Confidence                                                     0111112233445554443322 2334444    78889


Q ss_pred             CCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCC-----------------CCc
Q 021291          159 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKS-----------------QGF  221 (314)
Q Consensus       159 ~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~-----------------~g~  221 (314)
                      ++..++  +++.|+.|++|++.+++....+.        +|    ...+.++. |+|+..                 .+.
T Consensus       154 ~~~~l~--~~~~d~~v~~~~~~~~~~~~~~~--------~~----~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (317)
T d1vyhc1         154 DGTLIA--SCSNDQTVRVWVVATKECKAELR--------EH----RHVVECIS-WAPESSYSSISEATGSETKKSGKPGP  218 (317)
T ss_dssp             TSSEEE--EEETTSCEEEEETTTCCEEEEEC--------CC----SSCEEEEE-ECCSCGGGGGGGCCSCC-------CC
T ss_pred             CCCEEE--EEeCCCeEEEEeeccceeeEEEe--------cC----CCCceEEE-EeeccccceeeccccceeeeeccCCc
Confidence            887443  57779999999999999888776        44    33455555 665421                 133


Q ss_pred             eEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEee-------eeee
Q 021291          222 VNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFG-------IGFV  294 (314)
Q Consensus       222 ~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~-------~~~~  294 (314)
                       ++++|+.|+.|++||+++ ++++..+.+|...|.+++|+|++++|++|+.||.|++||+++++.+..+       ..++
T Consensus       219 -~~~~~~~d~~i~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~  296 (317)
T d1vyhc1         219 -FLLSGSRDKTIKMWDVST-GMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLD  296 (317)
T ss_dssp             -EEEEEETTSEEEEEETTT-TEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEE
T ss_pred             -eeEeccCCCEEEEEECCC-CcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence             789999999999999998 8899999999999999999999999999999999999999999877654       3355


Q ss_pred             ecCCCceece
Q 021291          295 CDQEGNKFGT  304 (314)
Q Consensus       295 ~~~~~~~~~~  304 (314)
                      +++++..+++
T Consensus       297 ~s~~~~~l~s  306 (317)
T d1vyhc1         297 FHKTAPYVVT  306 (317)
T ss_dssp             ECSSSSCEEE
T ss_pred             EcCCCCEEEE
Confidence            6777776655

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.7e-26  Score=184.62  Aligned_cols=249  Identities=16%  Similarity=0.275  Sum_probs=170.4

Q ss_pred             CCCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcc-------------
Q 021291            6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGP-------------   72 (314)
Q Consensus         6 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-------------   72 (314)
                      ..+++++++++|.+.|.+++|+|+  +|++|+.|+.+++|+............+...  +......+             
T Consensus        45 ~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~i~  120 (342)
T d2ovrb2          45 VTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTST--VRCMHLHEKRVVSGSRDATLR  120 (342)
T ss_dssp             TTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSC--EEEEEEETTEEEEEETTSEEE
T ss_pred             CCCCEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccceeccccccee--EeeeecccccccccccceeEE
Confidence            356889999999999999999864  8999999999999998876554443322211  22222111             


Q ss_pred             -----------------------cCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccC
Q 021291           73 -----------------------SIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA  129 (314)
Q Consensus        73 -----------------------~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (314)
                                             ......+++++.|+.|++||....+..    ..+..+........... ........
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~----~~~~~~~~~~~~~~~~~-~~l~s~~~  195 (342)
T d2ovrb2         121 VWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCL----HTLQGHTNRVYSLQFDG-IHVVSGSL  195 (342)
T ss_dssp             EEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEE----EEECCCSSCEEEEEECS-SEEEEEET
T ss_pred             EeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceee----EEEcCcccccccccCCC-CEEEEEeC
Confidence                                   003345666777777777776655432    22333322223233222 22233444


Q ss_pred             CCCcceeeccCCceeeecCCCCCC--ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCcee
Q 021291          130 NEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMC  207 (314)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  207 (314)
                      .+...+|++....... ...+|..  .+++++++. ++ +|+.|+.|++||+...+....+.        ++.. ....+
T Consensus       196 dg~i~~~d~~~~~~~~-~~~~~~~~v~~~~~~~~~-l~-s~s~d~~i~iwd~~~~~~~~~~~--------~~~~-~~~~~  263 (342)
T d2ovrb2         196 DTSIRVWDVETGNCIH-TLTGHQSLTSGMELKDNI-LV-SGNADSTVKIWDIKTGQCLQTLQ--------GPNK-HQSAV  263 (342)
T ss_dssp             TSCEEEEETTTCCEEE-EECCCCSCEEEEEEETTE-EE-EEETTSCEEEEETTTCCEEEEEC--------STTS-CSSCE
T ss_pred             CCeEEEeecccceeee-EecccccceeEEecCCCE-EE-EEcCCCEEEEEeccccccccccc--------ccce-eeece
Confidence            5667788887766544 3445555  566666654 33 67779999999999988877776        3322 23456


Q ss_pred             eeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeee-----cCCcceEEEEEeCCCCeEEEecCCCc----EEE
Q 021291          208 MAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK-----VHLEPVLCLSIDESCNGGISGGADQK----IVL  278 (314)
Q Consensus       208 ~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~s~s~dg~----i~i  278 (314)
                      .++. ++|+      ++++|+.||.|++||+++ ++.++.+.     +|...|++++|+|++.+|++|+.||+    |++
T Consensus       264 ~~~~-~~~~------~~~s~s~Dg~i~iwd~~t-g~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~  335 (342)
T d2ovrb2         264 TCLQ-FNKN------FVITSSDDGTVKLWDLKT-GEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLV  335 (342)
T ss_dssp             EEEE-ECSS------EEEEEETTSEEEEEETTT-CCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEE
T ss_pred             eecc-cCCC------eeEEEcCCCEEEEEECCC-CCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEE
Confidence            6665 7655      899999999999999998 78877764     57788999999999999999999985    999


Q ss_pred             EecCC
Q 021291          279 YNLDH  283 (314)
Q Consensus       279 w~~~~  283 (314)
                      ||++.
T Consensus       336 ~Df~~  340 (342)
T d2ovrb2         336 LDFDV  340 (342)
T ss_dssp             EECCC
T ss_pred             EeCCC
Confidence            99874

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.9e-26  Score=181.23  Aligned_cols=240  Identities=16%  Similarity=0.285  Sum_probs=166.8

Q ss_pred             CCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC
Q 021291            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (314)
Q Consensus         7 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg   86 (314)
                      .++++++|++|.+.|++++|  ++++|++|+.||.|++|++..+........+...  .  ..+.+  ....++++..++
T Consensus        44 ~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~--~--~~~~~--~~~~~~~~~~~~  115 (293)
T d1p22a2          44 TLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEA--V--LHLRF--NNGMMVTCSKDR  115 (293)
T ss_dssp             SCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSC--E--EEEEC--CTTEEEEEETTS
T ss_pred             CCcEEEEEecCCCCEeeeec--ccceeecccccccccccccccccccccccccccc--c--ccccc--cccceeeccccc
Confidence            46789999999999999987  5789999999999999999998887776655432  3  33334  457899999999


Q ss_pred             eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC--ceeccCCCceE
Q 021291           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYM  164 (314)
Q Consensus        87 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  164 (314)
                      .+.+||..+...... ......+.......... ...............|+....+.... +.++..  ..+.+++.. +
T Consensus       116 ~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~-~~~~~~~s~d~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~~~~~-l  191 (293)
T d1p22a2         116 SIAVWDMASPTDITL-RRVLVGHRAAVNVVDFD-DKYIVSASGDRTIKVWNTSTCEFVRT-LNGHKRGIACLQYRDRL-V  191 (293)
T ss_dssp             CEEEEECSSSSCCEE-EEEECCCSSCEEEEEEE-TTEEEEEETTSEEEEEETTTCCEEEE-EECCSSCEEEEEEETTE-E
T ss_pred             ceeEeeccccccccc-cccccccccccccceec-ccccccccCCCceeeecCCCCcEEEE-EcccccccccccCCCCe-E
Confidence            999999987654221 11112222222222211 11222333445566777776654443 333333  445555554 3


Q ss_pred             EEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCC---
Q 021291          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP---  241 (314)
Q Consensus       165 ~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~---  241 (314)
                      + +++.|+.|++||+++.+.+..+.        +|..    .+..   +.++   +. +|++|+.||.|++||+...   
T Consensus       192 ~-~~~~dg~i~i~d~~~~~~~~~~~--------~~~~----~v~~---~~~~---~~-~l~sg~~dg~i~iwd~~~~~~~  251 (293)
T d1p22a2         192 V-SGSSDNTIRLWDIECGACLRVLE--------GHEE----LVRC---IRFD---NK-RIVSGAYDGKIKVWDLVAALDP  251 (293)
T ss_dssp             E-EEETTSCEEEEETTTCCEEEEEC--------CCSS----CEEE---EECC---SS-EEEEEETTSCEEEEEHHHHTST
T ss_pred             E-EecCCCEEEEEecccceeeeeec--------ccce----eeee---cccc---ce-EEEEEcCCCEEEEEECCCCccc
Confidence            3 56679999999999999888776        4422    3333   4444   33 8999999999999997531   


Q ss_pred             -----CCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEe
Q 021291          242 -----GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN  280 (314)
Q Consensus       242 -----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~  280 (314)
                           ..++..+.+|.+.|++++|++  .+|+|+|.||+|++||
T Consensus       252 ~~~~~~~~~~~~~~H~~~V~~v~~d~--~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         252 RAPAGTLCLRTLVEHSGRVFRLQFDE--FQIVSSSHDDTILIWD  293 (293)
T ss_dssp             TSCTTTTEEEEECCCSSCCCCEEECS--SCEEECCSSSEEEEEC
T ss_pred             cccCCceeeEEecCCCCCEEEEEEcC--CEEEEEecCCEEEEeC
Confidence                 245778899999999999965  4899999999999997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.95  E-value=2.1e-25  Score=177.70  Aligned_cols=245  Identities=13%  Similarity=0.143  Sum_probs=162.6

Q ss_pred             CCceEEe-cCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeE---EEEEeccCCcccEEEEEEcccCCCCeEEEee
Q 021291            8 PDPVAVL-RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT---VSSSWVHSAAHGIVSVATGPSIGLNKVISQG   83 (314)
Q Consensus         8 ~~~~~~l-~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (314)
                      +++++.+ .+|...|++++|+|++++ ++++.|+.+++|+......   ......+.  ..+.+++|+|  ++..+++++
T Consensus        44 ~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~--~g~~~~~~~  118 (299)
T d1nr0a2          44 GISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKVVPAGGSGVDSSKAVANKLS--SQPLGLAVSA--DGDIAVAAC  118 (299)
T ss_dssp             CCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEEECSSSSSSCTTSCCEEECS--SCEEEEEECT--TSSCEEEEE
T ss_pred             CcEEEEEcCCCCCcEEEEEeecccee-ecccceeeEEEeccCCcccccccccccccc--cccccccccc--ccccccccc
Confidence            4566666 479999999999999865 5566789999999765321   11122344  4489999999  877766655


Q ss_pred             cCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC----ceeccC
Q 021291           84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAE  159 (314)
Q Consensus        84 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  159 (314)
                       ++.+++|+.....      ............+++... ........+...+|++............|..    ++|+|+
T Consensus       119 -~~~i~~~~~~~~~------~~~~~~~~~~~~~s~~~~-~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~  190 (299)
T d1nr0a2         119 -YKHIAIYSHGKLT------EVPISYNSSCVALSNDKQ-FVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNN  190 (299)
T ss_dssp             -SSEEEEEETTEEE------EEECSSCEEEEEECTTSC-EEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTT
T ss_pred             -ccccccccccccc------cccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccc
Confidence             5689999965321      111122222333332221 1223334556777787766554444444544    889999


Q ss_pred             CCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEcc
Q 021291          160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR  239 (314)
Q Consensus       160 ~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~  239 (314)
                      ++.++  +++.|+.|++||+.++........     ..+|    ...+.+++ |+|+   +. +|++|+.||.|++||++
T Consensus       191 ~~~l~--~~~~d~~i~~~~~~~~~~~~~~~~-----~~~h----~~~v~~l~-~s~~---~~-~l~sgs~dg~i~iwd~~  254 (299)
T d1nr0a2         191 GAFLV--ATDQSRKVIPYSVANNFELAHTNS-----WTFH----TAKVACVS-WSPD---NV-RLATGSLDNSVIVWNMN  254 (299)
T ss_dssp             SSEEE--EEETTSCEEEEEGGGTTEESCCCC-----CCCC----SSCEEEEE-ECTT---SS-EEEEEETTSCEEEEETT
T ss_pred             ccccc--cccccccccccccccccccccccc-----cccc----cccccccc-cccc---cc-ceEEEcCCCEEEEEECC
Confidence            87544  566789999999988765544331     0134    45788887 9998   44 99999999999999998


Q ss_pred             CCCC-ceEeeecC-CcceEEEEEeCCCCeEEEecCCCcEEEEecC
Q 021291          240 NPGI-PLTAMKVH-LEPVLCLSIDESCNGGISGGADQKIVLYNLD  282 (314)
Q Consensus       240 ~~~~-~~~~~~~h-~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~  282 (314)
                      +... ++.....| ...|..+.| +++.+|++++.||.|++||+.
T Consensus       255 ~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         255 KPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             CTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred             CCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence            7332 23333344 446676655 456689999999999999985

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=1.9e-23  Score=174.60  Aligned_cols=280  Identities=10%  Similarity=0.011  Sum_probs=176.5

Q ss_pred             CCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEE--Ee---ccCCcccEEEEEEcccCCCCeEE-
Q 021291            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS--SW---VHSAAHGIVSVATGPSIGLNKVI-   80 (314)
Q Consensus         7 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~--~~---~~~~~~~v~~~~~~~~~~~~~l~-   80 (314)
                      .++.+.++..|. .+..++|+|||++|++++.||+|++||+.+++....  ++   +|.  ..+.+++|+|  ||++++ 
T Consensus        51 t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~--~~~~s~~~sp--DG~~l~v  125 (426)
T d1hzua2          51 SKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEAR--SVESSKFKGY--EDRYTIA  125 (426)
T ss_dssp             TCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEE--EEEECCSTTC--TTTEEEE
T ss_pred             CCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCc--ceEEeeeecC--CCCEEEE
Confidence            457888998875 589999999999999999999999999998865433  32   333  3367788889  999875 


Q ss_pred             EeecCCeEEEEeCCCCCCCCCCeeeeecceee-----------EEEeeeeeccccccccCCCCcceeeccCCceeeecCC
Q 021291           81 SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYH-----------FCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSL  149 (314)
Q Consensus        81 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (314)
                      ++..++++++||..++.+..  ..........           ....+..................+.............
T Consensus       126 ~~~~~~~v~i~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  203 (426)
T d1hzua2         126 GAYWPPQFAIMDGETLEPKQ--IVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI  203 (426)
T ss_dssp             EEEESSEEEEEETTTCCEEE--EEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEE
T ss_pred             eecCCCeEEEEcCCccceeE--EeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEe
Confidence            45579999999999886533  1111111110           1111111111111111111111222222221111111


Q ss_pred             CCCC----ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEE
Q 021291          150 CDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL  225 (314)
Q Consensus       150 ~~~~----~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~  225 (314)
                      .+..    ++++|+++++++ +...+..+.+++..+++....+...      .+  ...  ..... +.+... +....+
T Consensus       204 ~~~~~~~~~~~~~~g~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~------~~--~~~--~~~~~-~~~~~~-~~~~~~  270 (426)
T d1hzua2         204 GAAPFLADGGWDSSHRYFMT-AANNSNKVAVIDSKDRRLSALVDVG------KT--PHP--GRGAN-FVHPKY-GPVWST  270 (426)
T ss_dssp             ECCSSEEEEEECTTSCEEEE-EETTCSEEEEEETTTTEEEEEEECS------SC--CCC--SCCEE-EEETTT-EEEEEE
T ss_pred             ccCCccEeeeECCCCcEEEe-eeecccceeeeecccccEEEEeccC------Cc--ccc--cceee-eecCCC-CceEEe
Confidence            1111    889999987776 4556789999999999988777631      11  111  11222 333311 322444


Q ss_pred             EeecCCcEEEEEccCC------CCceEeeecCCcceEEEEEeCCCCeEE-------EecCCCcEEEEecCCCeeeEe---
Q 021291          226 AGYEDGSILVWDIRNP------GIPLTAMKVHLEPVLCLSIDESCNGGI-------SGGADQKIVLYNLDHSTYVLF---  289 (314)
Q Consensus       226 ~g~~dg~i~vwd~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~l~-------s~s~dg~i~iw~~~~~~~~~~---  289 (314)
                      ....|+.+.+|+....      .+....+.+|...+..++|+|++++|+       +++.|++|+|||+++++....   
T Consensus       271 ~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~  350 (426)
T d1hzua2         271 SHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLP  350 (426)
T ss_dssp             ECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEEC
T ss_pred             ccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEec
Confidence            5567888999887642      356778999999999999999999998       466789999999998876543   


Q ss_pred             -------------eeeeeecCCCcee-ceee
Q 021291          290 -------------GIGFVCDQEGNKF-GTTW  306 (314)
Q Consensus       290 -------------~~~~~~~~~~~~~-~~~w  306 (314)
                                   ...+.++|+|+.+ .+.|
T Consensus       351 ~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~  381 (426)
T d1hzua2         351 IAEWADLGEGAKRVVQPEYNKRGDEVWFSVW  381 (426)
T ss_dssp             HHHHHCCCSSCCCEEEEEECSSSSEEEEEEC
T ss_pred             cchhcccCCCCccEEEEEECCCCCEEEEEEe
Confidence                         2334678999744 4444

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.92  E-value=3.2e-23  Score=168.81  Aligned_cols=164  Identities=9%  Similarity=-0.038  Sum_probs=116.1

Q ss_pred             CceEEecCCCCceeEEEEccCCCEEEEecCCC--eEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGG--ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg   86 (314)
                      ..+..+ +|...|.+++|+|||++|++++.+.  .|++||.++++.. .+..|.  ..|.+++|+|  ++++|++++.++
T Consensus        34 ~~~~~~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~--~~v~~~~~sp--dg~~l~~~~~~~  107 (360)
T d1k32a3          34 TYVLKV-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENL--GNVFAMGVDR--NGKFAVVANDRF  107 (360)
T ss_dssp             SBEEEC-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCC--CSEEEEEECT--TSSEEEEEETTS
T ss_pred             CcEEEc-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCC--ceEEeeeecc--cccccceecccc
Confidence            344444 6999999999999999998776553  7999999877655 456676  4499999999  999999999999


Q ss_pred             eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEE
Q 021291           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV  166 (314)
Q Consensus        87 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (314)
                      .+++|++.+++...    ........                                      ...++|+|+|+.++.+
T Consensus       108 ~~~~~~~~~~~~~~----~~~~~~~~--------------------------------------~~~~~~spdg~~la~~  145 (360)
T d1k32a3         108 EIMTVDLETGKPTV----IERSREAM--------------------------------------ITDFTISDNSRFIAYG  145 (360)
T ss_dssp             EEEEEETTTCCEEE----EEECSSSC--------------------------------------CCCEEECTTSCEEEEE
T ss_pred             ccccccccccceee----eeeccccc--------------------------------------ccchhhccceeeeeee
Confidence            99999998876422    11111100                                      0016689999876543


Q ss_pred             e--------ecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEc
Q 021291          167 A--------GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI  238 (314)
Q Consensus       167 ~--------g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~  238 (314)
                      .        +..++.+++||+.+++......         +    ......+. |+|+   |+ .|++++.++.+.+||.
T Consensus       146 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~---------~----~~~~~~~~-~spd---g~-~l~~~s~~~~~~~~d~  207 (360)
T d1k32a3         146 FPLKHGETDGYVMQAIHVYDMEGRKIFAATT---------E----NSHDYAPA-FDAD---SK-NLYYLSYRSLDPSPDR  207 (360)
T ss_dssp             EEECSSTTCSCCEEEEEEEETTTTEEEECSC---------S----SSBEEEEE-ECTT---SC-EEEEEESCCCCCEECS
T ss_pred             ccccccceeeccccceeeeccccCceeeecc---------c----cccccccc-ccCC---CC-EEEEEeCCCceEcccc
Confidence            2        3445679999999877654433         1    22445555 8887   44 7777777777777764

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=2.3e-23  Score=172.35  Aligned_cols=200  Identities=15%  Similarity=0.189  Sum_probs=140.3

Q ss_pred             CCCceeEEEEccC-----CCEEEEecCCCeEEEEeCCCCe---------------EEEEEe-ccCCcccEEEEEEcccCC
Q 021291           17 HRASVTDVCFHQT-----KPILFAGTTGGELRIWDTVQHR---------------TVSSSW-VHSAAHGIVSVATGPSIG   75 (314)
Q Consensus        17 h~~~v~~~~~~~~-----~~~l~s~~~dg~v~iwd~~~~~---------------~~~~~~-~~~~~~~v~~~~~~~~~~   75 (314)
                      +...+..++|.++     +.++++++.||.+++|++....               ...... .......+.+++|+|  +
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~--d  195 (393)
T d1sq9a_         118 KKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--R  195 (393)
T ss_dssp             GGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--T
T ss_pred             CCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECC--C
Confidence            4556778888774     4688999999999999974210               111111 111224589999999  7


Q ss_pred             CCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC--
Q 021291           76 LNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--  153 (314)
Q Consensus        76 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  153 (314)
                      + +|++|+.||+|++||+.+++.+.    .+...                                    ..+.+|..  
T Consensus       196 g-~lasgs~Dg~i~iwd~~~~~~~~----~~~~~------------------------------------~~l~~h~~~V  234 (393)
T d1sq9a_         196 G-LIATGFNNGTVQISELSTLRPLY----NFESQ------------------------------------HSMINNSNSI  234 (393)
T ss_dssp             S-EEEEECTTSEEEEEETTTTEEEE----EEECC------------------------------------C---CCCCCE
T ss_pred             C-EEEEEeCCCcEEEEeeccccccc----ccccc------------------------------------cccccccceE
Confidence            4 89999999999999999875422    11111                                    01122222  


Q ss_pred             --ceeccCCCceEEEeecCcC---eEEEEecCCCceeeeeccccc-----CCCCCcCCCCCceeeeEEEecCCCCCCceE
Q 021291          154 --DDVPAEGPKYMAVAGEQLS---EVEIWDLNTAERCTRLHQNSC-----GGSPNFSSKGRGMCMAVQAYLPSKSQGFVN  223 (314)
Q Consensus       154 --~~~~~~~~~~~~~~g~~d~---~i~vwd~~~~~~~~~~~~~~~-----~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~  223 (314)
                        ++|+|+|+.++  +|+.|+   .|++||+++++.+..+.....     ....+|    ...+++++ |+|+   ++ +
T Consensus       235 ~~l~~spdg~~l~--sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH----~~~V~~l~-fspd---~~-~  303 (393)
T d1sq9a_         235 RSVKFSPQGSLLA--IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH----SSWVMSLS-FNDS---GE-T  303 (393)
T ss_dssp             EEEEECSSTTEEE--EEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSB----SSCEEEEE-ECSS---SS-E
T ss_pred             EEcccccccceee--eecCCCCcceeeecccccceeeeeeccccccccceeeeecc----cCceeeec-cCCC---CC-e
Confidence              67999997544  565565   599999999988877752211     111245    55789998 9998   55 9


Q ss_pred             EEEeecCCcEEEEEccCCCCceEeeecCCcceE----EEEEeCCCCeEEEec
Q 021291          224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVL----CLSIDESCNGGISGG  271 (314)
Q Consensus       224 l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~----~~~~~~~~~~l~s~s  271 (314)
                      |++|+.|++|+|||+++ ++++.++.+|.+.|.    .++|++++..+++++
T Consensus       304 l~S~s~D~~v~vWd~~~-g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~  354 (393)
T d1sq9a_         304 LCSAGWDGKLRFWDVKT-KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG  354 (393)
T ss_dssp             EEEEETTSEEEEEETTT-TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred             eEEECCCCEEEEEECCC-CCEEEEECCcCCcccCCccEEEECCCCCEEEEcc
Confidence            99999999999999998 899999999988775    477888887766554

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.91  E-value=7.8e-21  Score=150.71  Aligned_cols=254  Identities=13%  Similarity=0.065  Sum_probs=175.2

Q ss_pred             CCCceEEecCCCCceeEEEEccCCCEE-EEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEE-Eeec
Q 021291            7 PPDPVAVLRGHRASVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGR   84 (314)
Q Consensus         7 ~~~~~~~l~~h~~~v~~~~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~   84 (314)
                      .++.++++... ..+..++|+|||++| ++++.++.|++||+.+++.+..+..+.   .+..++|++  ++..++ ++..
T Consensus        21 t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~   94 (301)
T d1l0qa2          21 SNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS---SPQGVAVSP--DGKQVYVTNMA   94 (301)
T ss_dssp             TTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS---SEEEEEECT--TSSEEEEEETT
T ss_pred             CCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc---ccccccccc--ccccccccccc
Confidence            44667777643 457899999999987 567789999999999999999988774   368999999  877555 5667


Q ss_pred             CCeEEEEeCCCCCCCCCCeeeeecc-eeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC--ceeccCCC
Q 021291           85 DGTVKCWDIENGGLSSNPSLTIKTN-SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGP  161 (314)
Q Consensus        85 dg~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  161 (314)
                      ++.+.+|+..+++...    .+... ......+++................+++................  ++++|++.
T Consensus        95 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (301)
T d1l0qa2          95 SSTLSVIDTTSNTVAG----TVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGT  170 (301)
T ss_dssp             TTEEEEEETTTTEEEE----EEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSS
T ss_pred             cceeeecccccceeee----eccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeecccc
Confidence            7899999999876433    22222 22233333333333333333344455555555433332222222  88999998


Q ss_pred             ceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEe--ecCCcEEEEEcc
Q 021291          162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG--YEDGSILVWDIR  239 (314)
Q Consensus       162 ~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g--~~dg~i~vwd~~  239 (314)
                      .+++ ++..++.+.+|+....+....+..             ......+. |+++   +...++++  ..++.|++||+.
T Consensus       171 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~-~~~~---g~~~~v~~~~~~~~~v~v~D~~  232 (301)
T d1l0qa2         171 KVYV-ANFDSMSISVIDTVTNSVIDTVKV-------------EAAPSGIA-VNPE---GTKAYVTNVDKYFNTVSMIDTG  232 (301)
T ss_dssp             EEEE-EETTTTEEEEEETTTTEEEEEEEC-------------SSEEEEEE-ECTT---SSEEEEEEECSSCCEEEEEETT
T ss_pred             ceee-ecccccccccccccceeeeecccc-------------cCCcceee-cccc---ccccccccccceeeeeeeeecC
Confidence            7765 455568888999888777666652             23455666 9987   44233332  345789999999


Q ss_pred             CCCCceEeeecCCcceEEEEEeCCCCeE-EEecCCCcEEEEecCCCeeeEee
Q 021291          240 NPGIPLTAMKVHLEPVLCLSIDESCNGG-ISGGADQKIVLYNLDHSTYVLFG  290 (314)
Q Consensus       240 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~s~dg~i~iw~~~~~~~~~~~  290 (314)
                      + ++.+..+.. ...+.+++|+|+|++| ++++.|+.|++||+++++.+..+
T Consensus       233 t-~~~~~~~~~-~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~  282 (301)
T d1l0qa2         233 T-NKITARIPV-GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATM  282 (301)
T ss_dssp             T-TEEEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             C-CeEEEEEcC-CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEE
Confidence            8 777777765 4567999999999976 68888999999999999887654

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=9.3e-23  Score=164.19  Aligned_cols=260  Identities=12%  Similarity=0.033  Sum_probs=158.9

Q ss_pred             EEecCCCCceeEEEEccC-CCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEE
Q 021291           12 AVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC   90 (314)
Q Consensus        12 ~~l~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~i   90 (314)
                      ....+|.++|.+++|+|+ +.+|++|+.||.|++|+...+........+.. .......+.+  +...+++++.|+++++
T Consensus        50 ~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~  126 (342)
T d1yfqa_          50 LQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEA-NLGICRICKY--GDDKLIAASWDGLIEV  126 (342)
T ss_dssp             EEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCC-CSCEEEEEEE--TTTEEEEEETTSEEEE
T ss_pred             EEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccccccccccccc-cccccccccc--ccccccccccccccce
Confidence            344479999999999985 56899999999999999998877766655543 2244555566  6789999999999999


Q ss_pred             EeCCCCCCCCCCeeeeecc--eeeEEEeeeee-ccccccccCCCCcceeeccCCcee---eecCCCCCC---ceeccCCC
Q 021291           91 WDIENGGLSSNPSLTIKTN--SYHFCKLSLVK-EPYANAKQANEPKDCYEREVGETV---DTDSLCDSK---DDVPAEGP  161 (314)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~---~~~~~~~~  161 (314)
                      ||++...............  ......+.... ..........+....|++......   .........   ..+.+...
T Consensus       127 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (342)
T d1yfqa_         127 IDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQ  206 (342)
T ss_dssp             ECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGG
T ss_pred             eeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCC
Confidence            9987654433111111111  00111111111 111222333445566666443321   111111111   33444443


Q ss_pred             ceEEEeecCcCeEEEEecCCCceeeeecccc---cCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEc
Q 021291          162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNS---CGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI  238 (314)
Q Consensus       162 ~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~---~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~  238 (314)
                      ..++ +++.||.+.+|+..............   ..............+.+++ |+|+   +. +|++|+.||.|++||+
T Consensus       207 ~~~~-~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~-~sp~---~~-~lasg~~Dg~v~vWD~  280 (342)
T d1yfqa_         207 EGYA-CSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIE-FSPR---HK-FLYTAGSDGIISCWNL  280 (342)
T ss_dssp             CEEE-EEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEE-ECTT---TC-CEEEEETTSCEEEEET
T ss_pred             CEEE-eecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEE-ecCC---cc-EEEEECCCCEEEEEEC
Confidence            4444 56678999999986543221111000   0000011111234577887 9998   44 8999999999999999


Q ss_pred             cCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecC
Q 021291          239 RNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD  282 (314)
Q Consensus       239 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~  282 (314)
                      ++ ++.+..+..+ ..+..++|++++.+|++++.|+.+++|...
T Consensus       281 ~~-~~~l~~~~~~-~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~  322 (342)
T d1yfqa_         281 QT-RKKIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             TT-TEEEEECCCC-SSSEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred             CC-CcEEEEecCC-CCCEEEEEEeCCCEEEEEEcCCcEEEeeee
Confidence            98 7777777543 344567778888899999999998888764

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=6.6e-22  Score=156.25  Aligned_cols=212  Identities=15%  Similarity=0.198  Sum_probs=132.5

Q ss_pred             CeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCC-Ceeeeecc---eeeEE-------Eeee
Q 021291           50 HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSN-PSLTIKTN---SYHFC-------KLSL  118 (314)
Q Consensus        50 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~~---~~~~~-------~~~~  118 (314)
                      .+.++++++|..+  |++++|+|      |+||+.||+|++||+.++..... .+..+...   .....       .+..
T Consensus         3 ~~~i~~l~gH~~~--I~~l~~s~------l~sgs~Dg~v~~Wd~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~   74 (287)
T d1pgua2           3 DEVLKTISGHNKG--ITALTVNP------LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGI   74 (287)
T ss_dssp             EEEEEEECCCSSC--EEEEETTT------TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTE
T ss_pred             cceeEEECCCCCc--eEEEEECc------EEEEeCCCeEEEEECCCCCCCCCCCEEEEEecCCCeEEEEeeccccccccc
Confidence            4788899999955  99999976      89999999999999876532110 00000000   00000       0000


Q ss_pred             ------------eeccc--cccccCCCCcceeeccCCceeeecCCCCCC-ceeccCCCceEEEeecCcCeEEEEecCCCc
Q 021291          119 ------------VKEPY--ANAKQANEPKDCYEREVGETVDTDSLCDSK-DDVPAEGPKYMAVAGEQLSEVEIWDLNTAE  183 (314)
Q Consensus       119 ------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~  183 (314)
                                  ...+.  ............+.......... +..+.. .+++++++.++ +++..++.+++|++...+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-v~~~~~~~v~~~~~~~~~  152 (287)
T d1pgua2          75 TKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKS-VRLNSPGSAVSLSQNYVA-VGLEEGNTIQVFKLSDLE  152 (287)
T ss_dssp             EEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEE-EECSSCEEEEEECSSEEE-EEETTTSCEEEEETTEEE
T ss_pred             cccccccceeeeeeccCCceEEEeecccceeeeccceeeeee-ccccceeeeeeccCccee-eeccccceeeeeeccccc
Confidence                        00000  00011111112222222222211 112222 67788876554 455555789999998766


Q ss_pred             eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCC
Q 021291          184 RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDES  263 (314)
Q Consensus       184 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~  263 (314)
                      ....+..       .    ....+.+++ |+|+   +. +|++|+.||.|++||+.+.......+.+|..+|++++|+|.
T Consensus       153 ~~~~~~~-------~----~~~~v~~~~-~s~~---~~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~  216 (287)
T d1pgua2         153 VSFDLKT-------P----LRAKPSYIS-ISPS---ET-YIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPA  216 (287)
T ss_dssp             EEEECSS-------C----CSSCEEEEE-ECTT---SS-EEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCC
T ss_pred             eeeeeee-------c----cCCceeEEE-eccC---cc-ccccccccccccceeecccccccccccccccccceeeeccc
Confidence            5555442       2    355788887 9998   44 89999999999999999833334457799999999999764


Q ss_pred             ----------CCeEEEecCCCcEEEEecCCCeee
Q 021291          264 ----------CNGGISGGADQKIVLYNLDHSTYV  287 (314)
Q Consensus       264 ----------~~~l~s~s~dg~i~iw~~~~~~~~  287 (314)
                                +.+|++|+.|+.|++||++++...
T Consensus       217 ~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~  250 (287)
T d1pgua2         217 EKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKI  250 (287)
T ss_dssp             C------CCSCCEEEEEETTSCEEEEESSCTTCC
T ss_pred             ccccccccCCCCeeEeecCCCeEEEEECCCCCeE
Confidence                      568999999999999999875443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=9.4e-22  Score=164.20  Aligned_cols=269  Identities=7%  Similarity=-0.083  Sum_probs=159.4

Q ss_pred             CCCCceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeE--EEEEe---ccCCcccEEEEEEcccCCCCeE-
Q 021291            6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT--VSSSW---VHSAAHGIVSVATGPSIGLNKV-   79 (314)
Q Consensus         6 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~---~~~~~~~v~~~~~~~~~~~~~l-   79 (314)
                      ...+.++.+..|. .+..++|+|||++|++++.||.|++||+.+++.  ...++   .|.  ..+.+..|+|  ||++| 
T Consensus        50 ~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~--~~~~s~~~Sp--DG~~l~  124 (432)
T d1qksa2          50 STYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR--SIETSKMEGW--EDKYAI  124 (432)
T ss_dssp             TTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE--EEEECCSTTC--TTTEEE
T ss_pred             CCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCC--CeEEecccCC--CCCEEE
Confidence            4567888998774 699999999999999999999999999987653  33333   233  3366777888  99976 


Q ss_pred             EEeecCCeEEEEeCCCCCCCCCCeeeeec-----------ceeeEEEeeeeeccccccccCCCCcceeeccCCceeeec-
Q 021291           80 ISQGRDGTVKCWDIENGGLSSNPSLTIKT-----------NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTD-  147 (314)
Q Consensus        80 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  147 (314)
                      ++++.+++|++||..+++...  .+....           .......+++.+..........+....++....+..... 
T Consensus       125 vs~~~~~~v~i~d~~t~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~  202 (432)
T d1qksa2         125 AGAYWPPQYVIMDGETLEPKK--IQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTE  202 (432)
T ss_dssp             EEEEETTEEEEEETTTCCEEE--EEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEE
T ss_pred             EEcCCCCeEEEEeCcccccee--eeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEE
Confidence            678889999999999987543  111111           011112222222222222233334444555444332211 


Q ss_pred             C-CCCC--CceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCC----------------------------
Q 021291          148 S-LCDS--KDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGS----------------------------  196 (314)
Q Consensus       148 ~-~~~~--~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~----------------------------  196 (314)
                      + .+..  .++|+|+|++++++ +..++.+.++|..+++....+........                            
T Consensus       203 i~~g~~~~~~~~spdg~~~~va-~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~  281 (432)
T d1qksa2         203 ISAERFLHDGGLDGSHRYFITA-ANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVAL  281 (432)
T ss_dssp             EECCSSEEEEEECTTSCEEEEE-EGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEE
T ss_pred             EcccCccccceECCCCCEEEEe-ccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEe
Confidence            1 1111  18999999887764 44478899999987766544331100000                            


Q ss_pred             -----CCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCc-----------------------------------EEEE
Q 021291          197 -----PNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS-----------------------------------ILVW  236 (314)
Q Consensus       197 -----~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~-----------------------------------i~vw  236 (314)
                           ..+.. ....+.... +.|+   +. .+++++.++.                                   +++|
T Consensus       282 ~~~~~~~~~~-~~~~v~~~~-~~~~---g~-~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~la~~s~d~~~k~w  355 (432)
T d1qksa2         282 IGTDPEGHPD-NAWKILDSF-PALG---GG-SLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTL  355 (432)
T ss_dssp             EECCTTTCTT-TBTSEEEEE-ECSC---SC-CCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEE
T ss_pred             cccccccccc-cccEEEEEE-EcCC---CC-eEEEEecCCccceeecccCCCCCCeeeEEEEEechhhcccccCCceEec
Confidence                 00000 001122222 4443   21 3344444444                                   4444


Q ss_pred             EccCCCCceEeeecCCcceEEEEEeCCCCeEEEec-----CCCcEEEEecCCCeeeEeeee
Q 021291          237 DIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG-----ADQKIVLYNLDHSTYVLFGIG  292 (314)
Q Consensus       237 d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s-----~dg~i~iw~~~~~~~~~~~~~  292 (314)
                      |+.+ .   ..+..|...|..++|+|||++|+.+.     .+|.|+|||..+.+....+.+
T Consensus       356 ~~~~-~---~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~  412 (432)
T d1qksa2         356 PIAE-W---AGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD  412 (432)
T ss_dssp             CHHH-H---HTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred             cccc-c---cccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceEEeEecC
Confidence            4332 1   12235667899999999999875443     478999999999998766544

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.88  E-value=1.8e-21  Score=158.31  Aligned_cols=193  Identities=13%  Similarity=0.031  Sum_probs=144.4

Q ss_pred             eEEEEcc-CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC--eEEEEeCCCCCC
Q 021291           22 TDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG--TVKCWDIENGGL   98 (314)
Q Consensus        22 ~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg--~v~iwd~~~~~~   98 (314)
                      ..-.||| ||+++|+++. |.|++||+++++.++.  .|.  ..|.+++|+|  |+++|++++.+.  .|++||.++++.
T Consensus         6 ~~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~~--~~~--~~v~~~~~sp--Dg~~l~~~~~~~g~~v~v~d~~~~~~   78 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLKV--PEP--LRIRYVRRGG--DTKVAFIHGTREGDFLGIYDYRTGKA   78 (360)
T ss_dssp             GEEEEEECGGGCEEEEET-TEEEEECTTSSBEEEC--SCC--SCEEEEEECS--SSEEEEEEEETTEEEEEEEETTTCCE
T ss_pred             hcccccCCCCCEEEEEEC-CeEEEEECCCCcEEEc--cCC--CCEEEEEECC--CCCEEEEEEcCCCCEEEEEECCCCcE
Confidence            4567999 9999998865 6999999988877653  566  4599999999  999998776653  799999998753


Q ss_pred             CCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEe
Q 021291           99 SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWD  178 (314)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd  178 (314)
                      ..     +..+......                                      ++|+|+++.++  +++.++.+++|+
T Consensus        79 ~~-----~~~~~~~v~~--------------------------------------~~~spdg~~l~--~~~~~~~~~~~~  113 (360)
T d1k32a3          79 EK-----FEENLGNVFA--------------------------------------MGVDRNGKFAV--VANDRFEIMTVD  113 (360)
T ss_dssp             EE-----CCCCCCSEEE--------------------------------------EEECTTSSEEE--EEETTSEEEEEE
T ss_pred             EE-----eeCCCceEEe--------------------------------------eeecccccccc--eecccccccccc
Confidence            21     1111111000                                      56999998665  455689999999


Q ss_pred             cCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEe----------ecCCcEEEEEccCCCCceEee
Q 021291          179 LNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG----------YEDGSILVWDIRNPGIPLTAM  248 (314)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g----------~~dg~i~vwd~~~~~~~~~~~  248 (314)
                      +.+++....+.        .|    ...+.++. |+|+   |+ +|+.+          ..++.+++||+.+ ++ ...+
T Consensus       114 ~~~~~~~~~~~--------~~----~~~~~~~~-~spd---g~-~la~~~~~~~~~~~~~~~~~~~v~d~~~-~~-~~~~  174 (360)
T d1k32a3         114 LETGKPTVIER--------SR----EAMITDFT-ISDN---SR-FIAYGFPLKHGETDGYVMQAIHVYDMEG-RK-IFAA  174 (360)
T ss_dssp             TTTCCEEEEEE--------CS----SSCCCCEE-ECTT---SC-EEEEEEEECSSTTCSCCEEEEEEEETTT-TE-EEEC
T ss_pred             ccccceeeeee--------cc----cccccchh-hccc---ee-eeeeeccccccceeeccccceeeecccc-Cc-eeee
Confidence            99998877776        44    33555666 9998   55 66643          3455799999986 44 3445


Q ss_pred             ecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCe
Q 021291          249 KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST  285 (314)
Q Consensus       249 ~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~  285 (314)
                      ..|...+..+.|+|+|++|++++.|+.+++|+.....
T Consensus       175 ~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~  211 (360)
T d1k32a3         175 TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLN  211 (360)
T ss_dssp             SCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSC
T ss_pred             cccccccccccccCCCCEEEEEeCCCceEcccccccc
Confidence            5677888999999999999999999999999976554

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=3.2e-20  Score=154.81  Aligned_cols=213  Identities=15%  Similarity=0.002  Sum_probs=152.5

Q ss_pred             ccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeee
Q 021291           27 HQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTI  106 (314)
Q Consensus        27 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~  106 (314)
                      +++.-++++.+.||+|.|||..+++++..+..+.   .+..++|+|  ||+++++++.|++|++||+.+++...  ..++
T Consensus        29 ~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~---~~~~v~fSp--DG~~l~~~s~dg~v~~~d~~t~~~~~--~~~i  101 (432)
T d1qksa2          29 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY---AVHISRLSA--SGRYLFVIGRDGKVNMIDLWMKEPTT--VAEI  101 (432)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEEEEECSS---CEEEEEECT--TSCEEEEEETTSEEEEEETTSSSCCE--EEEE
T ss_pred             CCCcEEEEEEcCCCEEEEEECCCCcEEEEEeCCC---CeeEEEECC--CCCEEEEEcCCCCEEEEEeeCCCceE--EEEE
Confidence            3344456899999999999999999999998763   389999999  99999999999999999999876432  3333


Q ss_pred             ecceee-EEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCcee
Q 021291          107 KTNSYH-FCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERC  185 (314)
Q Consensus       107 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~  185 (314)
                      .....+ ...++                                    ..|+|||+++++ +++.++.|++||..+++.+
T Consensus       102 ~~~~~~~~~~~s------------------------------------~~~SpDG~~l~v-s~~~~~~v~i~d~~t~~~~  144 (432)
T d1qksa2         102 KIGSEARSIETS------------------------------------KMEGWEDKYAIA-GAYWPPQYVIMDGETLEPK  144 (432)
T ss_dssp             ECCSEEEEEEEC------------------------------------CSTTCTTTEEEE-EEEETTEEEEEETTTCCEE
T ss_pred             ecCCCCCCeEEe------------------------------------cccCCCCCEEEE-EcCCCCeEEEEeCccccce
Confidence            332222 11111                                    348899987766 5666899999999999988


Q ss_pred             eeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeee-cCCcceEEEEEeCCC
Q 021291          186 TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK-VHLEPVLCLSIDESC  264 (314)
Q Consensus       186 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~-~h~~~v~~~~~~~~~  264 (314)
                      ..+.......... .....+....+. ++|+   |..++++...++.|.+||..+ .+...... .+...+..++|+|+|
T Consensus       145 ~~~~~~~~~~~~~-~~~~~~~~~~v~-~s~d---g~~~~vs~~~~~~i~~~d~~~-~~~~~~~~i~~g~~~~~~~~spdg  218 (432)
T d1qksa2         145 KIQSTRGMTYDEQ-EYHPEPRVAAIL-ASHY---RPEFIVNVKETGKILLVDYTD-LNNLKTTEISAERFLHDGGLDGSH  218 (432)
T ss_dssp             EEEECCEECTTTC-CEESCCCEEEEE-ECSS---SSEEEEEETTTTEEEEEETTC-SSEEEEEEEECCSSEEEEEECTTS
T ss_pred             eeeccCCccccce-eccCCCceeEEE-ECCC---CCEEEEEEccCCeEEEEEccC-CCcceEEEEcccCccccceECCCC
Confidence            8776211000000 001123445566 8887   554678888899999999987 44433333 456678999999999


Q ss_pred             CeEEEecC-CCcEEEEecCCCeeeEe
Q 021291          265 NGGISGGA-DQKIVLYNLDHSTYVLF  289 (314)
Q Consensus       265 ~~l~s~s~-dg~i~iw~~~~~~~~~~  289 (314)
                      +++++++. ++.+.++|.++++.+..
T Consensus       219 ~~~~va~~~~~~v~v~d~~~~~~~~~  244 (432)
T d1qksa2         219 RYFITAANARNKLVVIDTKEGKLVAI  244 (432)
T ss_dssp             CEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred             CEEEEeccccceEEEeecccceEEEE
Confidence            98766654 56899999998877654

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=7.3e-20  Score=147.24  Aligned_cols=243  Identities=11%  Similarity=0.044  Sum_probs=152.4

Q ss_pred             CEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEE-EeecCCeEEEEeCCCCCCCCCCeeeeecc
Q 021291           31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCWDIENGGLSSNPSLTIKTN  109 (314)
Q Consensus        31 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~~  109 (314)
                      ++|++++.|++|+|||+.+++.+..+..+.....+.+++|+|  ||++++ +++.++.|.+||+.+++.+.  .......
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~sp--Dg~~l~v~~~~~~~v~v~D~~t~~~~~--~~~~~~~   77 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAP--GGRIAYATVNKSESLVKIDLVTGETLG--RIDLSTP   77 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECT--TSSEEEEEETTTTEEEEEETTTCCEEE--EEECCBT
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECC--CCCEEEEEECCCCeEEEEECCCCcEEE--EEecCCC
Confidence            489999999999999999999999998765434578999999  999874 66789999999999987643  1111111


Q ss_pred             ee-----eEEEeeeeecccccc-----------ccCCCCcceeeccCCceeeecCCCC--CCceeccCCCceEEEeecCc
Q 021291          110 SY-----HFCKLSLVKEPYANA-----------KQANEPKDCYEREVGETVDTDSLCD--SKDDVPAEGPKYMAVAGEQL  171 (314)
Q Consensus       110 ~~-----~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~d  171 (314)
                      ..     ....+++........           .........++..............  ..++|+|+|+.+++  ++  
T Consensus        78 ~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~--~~--  153 (337)
T d1pbyb_          78 EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYG--LG--  153 (337)
T ss_dssp             TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEE--ES--
T ss_pred             cccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEE--Ec--
Confidence            11     111122111111000           0011222334444443332221111  12899999987764  33  


Q ss_pred             CeEEEEecCCCceeeeecccccCCCC-----------CcCC---------------------------------------
Q 021291          172 SEVEIWDLNTAERCTRLHQNSCGGSP-----------NFSS---------------------------------------  201 (314)
Q Consensus       172 ~~i~vwd~~~~~~~~~~~~~~~~~~~-----------~h~~---------------------------------------  201 (314)
                      +.+.+||..+++....+.........           ....                                       
T Consensus       154 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (337)
T d1pbyb_         154 RDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAM  233 (337)
T ss_dssp             SSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEE
T ss_pred             CCcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEE
Confidence            45788999888766655421100000           0000                                       


Q ss_pred             ----CCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEE
Q 021291          202 ----KGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIV  277 (314)
Q Consensus       202 ----~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~  277 (314)
                          ........+. ++|+   +. +++.+  ++.|++||+.+ ++.+..+. +...+.+++|+|+|++|++++.|+.|+
T Consensus       234 ~~~~~~~~~~~~~~-~~~~---~~-~~~~~--~~~i~v~d~~~-~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~  304 (337)
T d1pbyb_         234 REVRIMDVFYFSTA-VNPA---KT-RAFGA--YNVLESFDLEK-NASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLA  304 (337)
T ss_dssp             EEEEECSSCEEEEE-ECTT---SS-EEEEE--ESEEEEEETTT-TEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEE
T ss_pred             EEecCCCcceEEEE-eccc---ce-EEEEc--cccEEEEECCC-CcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEE
Confidence                0001112222 4444   33 44443  57899999998 77777765 567789999999999999999999999


Q ss_pred             EEecCCCeeeEee
Q 021291          278 LYNLDHSTYVLFG  290 (314)
Q Consensus       278 iw~~~~~~~~~~~  290 (314)
                      +||.++.+.+..+
T Consensus       305 v~D~~t~~~v~~i  317 (337)
T d1pbyb_         305 AYDAETLEKKGQV  317 (337)
T ss_dssp             EEETTTCCEEEEE
T ss_pred             EEECCCCcEEEEE
Confidence            9999999887664

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.86  E-value=1.7e-19  Score=145.58  Aligned_cols=259  Identities=11%  Similarity=0.050  Sum_probs=165.4

Q ss_pred             CCCceEEec-CCCCceeEEEEccCCCEE-EEecCCCeEEEEeCCCCeEEEEEeccCCc----ccEEEEEEcccCCCCeEE
Q 021291            7 PPDPVAVLR-GHRASVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHSAA----HGIVSVATGPSIGLNKVI   80 (314)
Q Consensus         7 ~~~~~~~l~-~h~~~v~~~~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~l~   80 (314)
                      ..+++++++ .|...+.+++|+|||+++ +++..++.|++||+.+++.+..+......    ..+..++|+|  ||++++
T Consensus        27 t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~--DG~~l~  104 (346)
T d1jmxb_          27 SDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP--DGKEVY  104 (346)
T ss_dssp             TTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT--TSSEEE
T ss_pred             CCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEec--CCCEEE
Confidence            456778776 466778999999999987 56678999999999999998877644321    1256889999  999888


Q ss_pred             Eee------------cCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecC
Q 021291           81 SQG------------RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDS  148 (314)
Q Consensus        81 s~~------------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (314)
                      +++            .++.+.+||..+++..................    ..........+.....++...........
T Consensus       105 v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (346)
T d1jmxb_         105 ATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMR----AADDGSLYVAGPDIYKMDVKTGKYTVALP  180 (346)
T ss_dssp             EEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEE----ECTTSCEEEESSSEEEECTTTCCEEEEEC
T ss_pred             EEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEE----ecCCCEEEEeCCcceEEEccCCCEEEEEe
Confidence            765            46789999998876543111111111111111    11111122223344555555544333221


Q ss_pred             CCCCC--ceeccCCCceEEE------------------------eecCcCeEEEEecCCCceeeeecccccCCCCCcCCC
Q 021291          149 LCDSK--DDVPAEGPKYMAV------------------------AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSK  202 (314)
Q Consensus       149 ~~~~~--~~~~~~~~~~~~~------------------------~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~  202 (314)
                      .....  ..++|++..+++.                        ++..+..+.+||..++........       .|   
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~---  250 (346)
T d1jmxb_         181 LRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA-------DL---  250 (346)
T ss_dssp             STTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEE-------EC---
T ss_pred             cCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEee-------cc---
Confidence            11111  5555555433221                        222345677788777765544331       22   


Q ss_pred             CCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecC
Q 021291          203 GRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD  282 (314)
Q Consensus       203 ~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~  282 (314)
                       ...+..+. ++|+   +. +++... ++.|++||..+ ++.+..+. +...+.+++|+|||++|++++.|+.|++||++
T Consensus       251 -~~~~~~~~-~~~~---~~-~~~~~~-~~~v~v~d~~~-~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~  321 (346)
T d1jmxb_         251 -TELYFTGL-RSPK---DP-NQIYGV-LNRLAKYDLKQ-RKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPD  321 (346)
T ss_dssp             -SSCEEEEE-ECSS---CT-TEEEEE-ESEEEEEETTT-TEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETT
T ss_pred             -cceeEEEE-EeCC---CC-EEEEec-CCeEEEEECCC-CcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECc
Confidence             33556665 7777   33 455444 45799999998 77777665 45679999999999999999999999999999


Q ss_pred             CCeeeEee
Q 021291          283 HSTYVLFG  290 (314)
Q Consensus       283 ~~~~~~~~  290 (314)
                      +++.+..+
T Consensus       322 t~~~i~~i  329 (346)
T d1jmxb_         322 TLEKVKNI  329 (346)
T ss_dssp             TTEEEEEE
T ss_pred             cCCEEEEE
Confidence            99988764

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.85  E-value=3.4e-18  Score=135.28  Aligned_cols=243  Identities=12%  Similarity=0.107  Sum_probs=163.6

Q ss_pred             EEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEE-EeecCCeEEEEeCCCCCCCCCCeeeeecc-e
Q 021291           33 LFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCWDIENGGLSSNPSLTIKTN-S  110 (314)
Q Consensus        33 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~~-~  110 (314)
                      .++++.|++|.|||+.+++.+.++....   .+..++|+|  +|++|+ +++.++.|++||+.+++.+.    .+... .
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~g~---~p~~va~sp--dG~~l~v~~~~~~~i~v~d~~t~~~~~----~~~~~~~   75 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPVGS---NPMGAVISP--DGTKVYVANAHSNDVSIIDTATNNVIA----TVPAGSS   75 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECSS---SEEEEEECT--TSSEEEEEEGGGTEEEEEETTTTEEEE----EEECSSS
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEECCC---CceEEEEeC--CCCEEEEEECCCCEEEEEECCCCceee----eeecccc
Confidence            3567889999999999999999887653   368999999  999774 67789999999999987543    22222 1


Q ss_pred             eeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC---ceeccCCCceEEEeecCcCeEEEEecCCCceeee
Q 021291          111 YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTR  187 (314)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~  187 (314)
                      .....+...................++.......... ..+..   ++++|++..+++ ++..++.+.+|+..+......
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~dg~~~~~-~~~~~~~~~~~~~~~~~~~~~  153 (301)
T d1l0qa2          76 PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV-KTGKSPLGLALSPDGKKLYV-TNNGDKTVSVINTVTKAVINT  153 (301)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE-ECSSSEEEEEECTTSSEEEE-EETTTTEEEEEETTTTEEEEE
T ss_pred             ccccccccccccccccccccceeeecccccceeeeec-cccccceEEEeecCCCeeee-eeccccceeeeeccccceeee
Confidence            2223333332222223333344445555554433322 22222   889999987765 566689999999999988887


Q ss_pred             ecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeE
Q 021291          188 LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGG  267 (314)
Q Consensus       188 ~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l  267 (314)
                      +..             ......+. ++|+   +..++++...++.+.+|+... ......+.. ...+..++|++++..+
T Consensus       154 ~~~-------------~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~g~~~  214 (301)
T d1l0qa2         154 VSV-------------GRSPKGIA-VTPD---GTKVYVANFDSMSISVIDTVT-NSVIDTVKV-EAAPSGIAVNPEGTKA  214 (301)
T ss_dssp             EEC-------------CSSEEEEE-ECTT---SSEEEEEETTTTEEEEEETTT-TEEEEEEEC-SSEEEEEEECTTSSEE
T ss_pred             ccc-------------CCCceEEE-eecc---ccceeeecccccccccccccc-eeeeecccc-cCCcceeecccccccc
Confidence            762             22355666 8987   442444444556777888775 555555544 4567889999999887


Q ss_pred             EEec---CCCcEEEEecCCCeeeEe------eeeeeecCCCcee-cee
Q 021291          268 ISGG---ADQKIVLYNLDHSTYVLF------GIGFVCDQEGNKF-GTT  305 (314)
Q Consensus       268 ~s~s---~dg~i~iw~~~~~~~~~~------~~~~~~~~~~~~~-~~~  305 (314)
                      +.++   .++.|++||+.+++.+..      ..+++++|+|..+ .+.
T Consensus       215 ~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~va~spdg~~l~va~  262 (301)
T d1l0qa2         215 YVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVAL  262 (301)
T ss_dssp             EEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEE
T ss_pred             ccccccceeeeeeeeecCCCeEEEEEcCCCCEEEEEEeCCCCEEEEEE
Confidence            6553   346899999999987664      3457788998753 443

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.82  E-value=1e-17  Score=139.44  Aligned_cols=204  Identities=11%  Similarity=-0.019  Sum_probs=145.5

Q ss_pred             CCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecc
Q 021291           30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTN  109 (314)
Q Consensus        30 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~  109 (314)
                      +-++++.+.||+|+|||+.+++.+.++..+.   .+..++|+|  ||++|++++.|++|++||+.+++...  ..++...
T Consensus        32 ~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~---~~~~vafSP--DGk~l~~~~~d~~v~vwd~~t~~~~~--~~~i~~~  104 (426)
T d1hzua2          32 NLFSVTLRDAGQIALVDGDSKKIVKVIDTGY---AVHISRMSA--SGRYLLVIGRDARIDMIDLWAKEPTK--VAEIKIG  104 (426)
T ss_dssp             GEEEEEETTTTEEEEEETTTCSEEEEEECCS---SEEEEEECT--TSCEEEEEETTSEEEEEETTSSSCEE--EEEEECC
T ss_pred             eEEEEEEcCCCEEEEEECCCCcEEEEEeCCC---CeeEEEECC--CCCEEEEEeCCCCEEEEEccCCceeE--EEEEeCC
Confidence            3356888999999999999999999998773   389999999  99999999999999999999987532  2233322


Q ss_pred             ee-eEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEecCCCceeeee
Q 021291          110 SY-HFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRL  188 (314)
Q Consensus       110 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~  188 (314)
                      .. ....++                                    .+|+|||+++++ ++..++.+++||..+++....+
T Consensus       105 ~~~~~~~~s------------------------------------~~~spDG~~l~v-~~~~~~~v~i~d~~~~~~~~~~  147 (426)
T d1hzua2         105 IEARSVESS------------------------------------KFKGYEDRYTIA-GAYWPPQFAIMDGETLEPKQIV  147 (426)
T ss_dssp             SEEEEEEEC------------------------------------CSTTCTTTEEEE-EEEESSEEEEEETTTCCEEEEE
T ss_pred             CCCcceEEe------------------------------------eeecCCCCEEEE-eecCCCeEEEEcCCccceeEEe
Confidence            21 111122                                    458899987765 5556899999999999887776


Q ss_pred             cccccCCCCCcCCCC-------CceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEe
Q 021291          189 HQNSCGGSPNFSSKG-------RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSID  261 (314)
Q Consensus       189 ~~~~~~~~~~h~~~~-------~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~  261 (314)
                      .        +|....       .+....+. ++++   +..++.+....+.+.+++.............+...+..+.|+
T Consensus       148 ~--------~~~~~~~~~~~~~~~~~~~i~-~s~d---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (426)
T d1hzua2         148 S--------TRGMTVDTQTYHPEPRVAAII-ASHE---HPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWD  215 (426)
T ss_dssp             E--------CCEECSSSCCEESCCCEEEEE-ECSS---SSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEEC
T ss_pred             e--------ccCCCccceeecCCCceeEEE-ECCC---CCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeEC
Confidence            6        332211       12223343 6665   333445555566677777765333444455778889999999


Q ss_pred             CCCCeEEEec-CCCcEEEEecCCCeeeEe
Q 021291          262 ESCNGGISGG-ADQKIVLYNLDHSTYVLF  289 (314)
Q Consensus       262 ~~~~~l~s~s-~dg~i~iw~~~~~~~~~~  289 (314)
                      |++++++++. .+..+.+++..+++.+..
T Consensus       216 ~~g~~~~~a~~~~~~~~~~~~~~~~~~~~  244 (426)
T d1hzua2         216 SSHRYFMTAANNSNKVAVIDSKDRRLSAL  244 (426)
T ss_dssp             TTSCEEEEEETTCSEEEEEETTTTEEEEE
T ss_pred             CCCcEEEeeeecccceeeeecccccEEEE
Confidence            9999876665 566799999998887654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.82  E-value=8.9e-18  Score=137.19  Aligned_cols=266  Identities=8%  Similarity=-0.071  Sum_probs=161.5

Q ss_pred             ecCCCCceeEEEEccCCCEEEEe-----cCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEee-----
Q 021291           14 LRGHRASVTDVCFHQTKPILFAG-----TTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG-----   83 (314)
Q Consensus        14 l~~h~~~v~~~~~~~~~~~l~s~-----~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-----   83 (314)
                      ...+..++..++++|||+.++..     +.++.|.+||..+++.+..+..+.    ...++|+|  ||++|++++     
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~----~~~~a~Sp--DG~~l~va~~~~~~   89 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF----LPNPVAAH--SGSEFALASTSFSR   89 (373)
T ss_pred             cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCC----CccEEEcC--CCCEEEEEeecCCc
Confidence            44688999999999999988764     345679999999999999887665    23799999  999998875     


Q ss_pred             -----cCCeEEEEeCCCCCCCCCCeeeeeccee-------eEEEeeeeecccccccc-CCCCcceeeccCCceeeecCCC
Q 021291           84 -----RDGTVKCWDIENGGLSSNPSLTIKTNSY-------HFCKLSLVKEPYANAKQ-ANEPKDCYEREVGETVDTDSLC  150 (314)
Q Consensus        84 -----~dg~v~iwd~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  150 (314)
                           .++.|.+||..+++...  .........       ....++........... .......++....... .....
T Consensus        90 ~~~~~~~~~v~v~D~~t~~~~~--~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~  166 (373)
T d2madh_          90 IAKGKRTDYVEVFDPVTFLPIA--DIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDD-QLLSS  166 (373)
T ss_pred             ccccccceEEEEEECCCCcEEE--EEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEE-EEecc
Confidence                 46789999999987643  111111111       11222222222111111 1122222332222211 11111


Q ss_pred             CCCceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCC------------C------CCcC----------C-
Q 021291          151 DSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGG------------S------PNFS----------S-  201 (314)
Q Consensus       151 ~~~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~------------~------~~h~----------~-  201 (314)
                      ...+.++|+++.+++ +.+.|+.+.+||...++............            .      ....          . 
T Consensus       167 ~~~~~~s~~g~~~~v-~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  245 (373)
T d2madh_         167 PTCYHIHPGAPSTFY-LLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAG  245 (373)
T ss_pred             ceeEEEecCCCcEEE-EEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCe
Confidence            222788999987765 56668999999988766543322100000            0      0000          0 


Q ss_pred             --------CCC----------ceeeeEEEecCCCC-------CCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceE
Q 021291          202 --------KGR----------GMCMAVQAYLPSKS-------QGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVL  256 (314)
Q Consensus       202 --------~~~----------~~~~~~~~~~p~~~-------~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~  256 (314)
                              ...          .....+. ++|++.       .+. .++....++.|.+||..+ ++.+..+. +...+.
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~-~~~~~~~~~~v~~~d~~t-~~~~~~~~-~~~~~~  321 (373)
T d2madh_         246 ATNKAPIDALSGGRKADTWRPGGWQQVA-YLKSSDGIYLLTSEQS-AWKLHAAAKEVTSVTGLV-GQTSSQIS-LGHDVD  321 (373)
T ss_pred             EEEEEeeccccCcEEeeeeccCcceeeE-EecCCCeEEEecCCCc-eEEeecCCCeEEEEECCC-CcEEEEec-CCCCee
Confidence                    000          0001111 333311       011 344556677899999988 77777665 567889


Q ss_pred             EEEEeCCCCe--EEEecCCCcEEEEecCCCeeeEeeeee
Q 021291          257 CLSIDESCNG--GISGGADQKIVLYNLDHSTYVLFGIGF  293 (314)
Q Consensus       257 ~~~~~~~~~~--l~s~s~dg~i~iw~~~~~~~~~~~~~~  293 (314)
                      .++|+|||+.  +++++.|+.|++||+.+++.+..+.++
T Consensus       322 ~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~  360 (373)
T d2madh_         322 AISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVEL  360 (373)
T ss_pred             EEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCC
Confidence            9999999984  578999999999999999998776543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=3.8e-17  Score=131.09  Aligned_cols=256  Identities=11%  Similarity=0.072  Sum_probs=147.6

Q ss_pred             CCCCceeEEEEccCCCEEEE-ecCCCeEEEEeCCCCeEEEEEe---ccCCcccEEEEEEcccCCCCeEEEeec-CCeEEE
Q 021291           16 GHRASVTDVCFHQTKPILFA-GTTGGELRIWDTVQHRTVSSSW---VHSAAHGIVSVATGPSIGLNKVISQGR-DGTVKC   90 (314)
Q Consensus        16 ~h~~~v~~~~~~~~~~~l~s-~~~dg~v~iwd~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~v~i   90 (314)
                      .|.+.|..|+|+|||++|++ +..|+.|++|++........+.   .+.  ..+..++|+|  ||++|++++. ++.|.+
T Consensus        34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~--~~p~~l~~sp--Dg~~l~v~~~~~~~v~~  109 (333)
T d1ri6a_          34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP--GSLTHISTDH--QGQFVFVGSYNAGNVSV  109 (333)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS--SCCSEEEECT--TSSEEEEEETTTTEEEE
T ss_pred             cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccC--CCceEEEEcC--CCCEEeecccCCCceee
Confidence            58899999999999998854 5568999999987653322221   222  3367899999  9999998875 778999


Q ss_pred             EeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCcee-------eecCCCCCC--ceeccCCC
Q 021291           91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETV-------DTDSLCDSK--DDVPAEGP  161 (314)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~--~~~~~~~~  161 (314)
                      |+...................+...+++.................++.......       .....+...  ++|++++.
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~  189 (333)
T d1ri6a_         110 TRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQ  189 (333)
T ss_dssp             EEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSS
T ss_pred             eccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccce
Confidence            988765432100001111111222233322222222222223333443332111       111111111  88999987


Q ss_pred             ceEEEeecCcCeEEEEecCCCce----eeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEE
Q 021291          162 KYMAVAGEQLSEVEIWDLNTAER----CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD  237 (314)
Q Consensus       162 ~~~~~~g~~d~~i~vwd~~~~~~----~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd  237 (314)
                      .++. +....+...+|+......    .......      ............+. ++|+   ++..++++..++.+.+|+
T Consensus       190 ~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~-~s~d---~~~~~~~~~~~~~~~~~~  258 (333)
T d1ri6a_         190 YAYC-VNELNSSVDVWELKDPHGNIECVQTLDMM------PENFSDTRWAADIH-ITPD---GRHLYACDRTASLITVFS  258 (333)
T ss_dssp             EEEE-EETTTTEEEEEESSCTTSCCEEEEEEECS------CTTCCSCCCEEEEE-ECTT---SSEEEEEETTTTEEEEEE
T ss_pred             eEEe-eccccCceEEEeecccccceeeeeeeeee------ecCCCccccceeEE-Eecc---cCceeeecccCCeEEEEE
Confidence            6655 455567788887654321    1111100      00111123345555 8887   554677778889999999


Q ss_pred             ccCCCCceEe--eecCCcceEEEEEeCCCCeEEEe-cCCCcEEEEec--CCCee
Q 021291          238 IRNPGIPLTA--MKVHLEPVLCLSIDESCNGGISG-GADQKIVLYNL--DHSTY  286 (314)
Q Consensus       238 ~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~-s~dg~i~iw~~--~~~~~  286 (314)
                      +...+.....  .......+.+++|+|+|++|+++ +.++.|++|++  ++++.
T Consensus       259 ~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l  312 (333)
T d1ri6a_         259 VSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL  312 (333)
T ss_dssp             ECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             EcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcE
Confidence            8863333322  22344567899999999987665 45689999965  45543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.76  E-value=1.6e-16  Score=128.63  Aligned_cols=259  Identities=8%  Similarity=0.008  Sum_probs=150.7

Q ss_pred             CCceEEecCCCCceeEEEEccCCCEEEEe----------cCCCeEEEEeCCCCeEEEEEeccCCc-----ccEEEEEEcc
Q 021291            8 PDPVAVLRGHRASVTDVCFHQTKPILFAG----------TTGGELRIWDTVQHRTVSSSWVHSAA-----HGIVSVATGP   72 (314)
Q Consensus         8 ~~~~~~l~~h~~~v~~~~~~~~~~~l~s~----------~~dg~v~iwd~~~~~~~~~~~~~~~~-----~~v~~~~~~~   72 (314)
                      ++++.++..+..  ..++|+|||++|++.          ..|+.|++||..+++.+..+..+...     .....++|+|
T Consensus        38 g~~~~~~~~g~~--~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~  115 (355)
T d2bbkh_          38 GRVIGMIDGGFL--PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP  115 (355)
T ss_dssp             TEEEEEEEECSS--CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT
T ss_pred             CcEEEEEECCCC--CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEec
Confidence            345555554433  378999999988764          34789999999999988887654321     1134678999


Q ss_pred             cCCCCeEEEee--cCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCc-e--eeec
Q 021291           73 SIGLNKVISQG--RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE-T--VDTD  147 (314)
Q Consensus        73 ~~~~~~l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~  147 (314)
                        ++++++.++  .+..+.+||..+++...    .+.......  ..+............+....+...... .  ....
T Consensus       116 --dg~~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~  187 (355)
T d2bbkh_         116 --DGKTLLFYQFSPAPAVGVVDLEGKAFKR----MLDVPDCYH--IFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTE  187 (355)
T ss_dssp             --TSSEEEEEECSSSCEEEEEETTTTEEEE----EEECCSEEE--EEEEETTEEEEEETTSCEEEEECCSSSCCEEEECC
T ss_pred             --CCCeeEEecCCCCceeeeeecCCCcEee----EEecCCcce--EeecCCcceEEEcCCCCEEEEEecCCCeEEEEecc
Confidence              988877664  46789999999886533    222111110  011111111111111111111111111 0  0000


Q ss_pred             --CCCCCC----ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCC------CCCceeeeEEEecC
Q 021291          148 --SLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSS------KGRGMCMAVQAYLP  215 (314)
Q Consensus       148 --~~~~~~----~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~------~~~~~~~~~~~~~p  215 (314)
                        ...+..    ..+.+++..++  ..+.++.+++|++..++....-...      .+..      ........+. ++|
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~------~~~~~~~~~~~~p~~~~~~~-~~~  258 (355)
T d2bbkh_         188 VFHPEDEFLINHPAYSQKAGRLV--WPTYTGKIHQIDLSSGDAKFLPAVE------ALTEAERADGWRPGGWQQVA-YHR  258 (355)
T ss_dssp             CCSCTTSCBCSCCEEETTTTEEE--EEBTTSEEEEEECTTSSCEECCCEE------SSCHHHHHTTEEECSSSCEE-EET
T ss_pred             cccceecceeeeccccCCCCeEE--EecCCCeEEEEecCCCcEEEEeccC------CcccceEeeeeeccceEEEE-EeC
Confidence              011111    56666666554  3455799999999877643211100      1100      0001112344 888


Q ss_pred             CCCCCceEEEEeecC----------CcEEEEEccCCCCceEeeecCCcceEEEEEeCCCC--eEEEecCCCcEEEEecCC
Q 021291          216 SKSQGFVNVLAGYED----------GSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCN--GGISGGADQKIVLYNLDH  283 (314)
Q Consensus       216 ~~~~g~~~l~~g~~d----------g~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~s~dg~i~iw~~~~  283 (314)
                      +   +. .++....+          ..|.+||..+ ++.+..+.. ...+.+++|+|+|+  ++++++.|+.|++||+++
T Consensus       259 d---~~-~~~~~~~~~~~~~~~~~~~~v~v~d~~t-~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~t  332 (355)
T d2bbkh_         259 A---LD-RIYLLVDQRDEWRHKTASRFVVVLDAKT-GERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAES  332 (355)
T ss_dssp             T---TT-EEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTT
T ss_pred             C---CC-eEEEEeccCCceeecCCCCeEEEEeCCC-CcEEEEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCC
Confidence            7   44 44433322          3699999998 777777764 45688999999997  457788899999999999


Q ss_pred             CeeeEeee
Q 021291          284 STYVLFGI  291 (314)
Q Consensus       284 ~~~~~~~~  291 (314)
                      ++.+..+.
T Consensus       333 g~~~~~i~  340 (355)
T d2bbkh_         333 GEELRSVN  340 (355)
T ss_dssp             CCEEEEEC
T ss_pred             CCEEEEEe
Confidence            99887654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.74  E-value=7.8e-17  Score=129.74  Aligned_cols=267  Identities=10%  Similarity=0.035  Sum_probs=154.0

Q ss_pred             EEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEE-EeecCCeEEEEeCCCCCCCCCC
Q 021291           24 VCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCWDIENGGLSSNP  102 (314)
Q Consensus        24 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~  102 (314)
                      ++|++++++|++++.|++|.+||+.+++.+.+++.+.. ..+.+++|+|  |+++++ +++.++.|.+||+.+++...  
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~-~~p~~l~~sp--DG~~l~v~~~~~~~v~~~d~~t~~~~~--   76 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK-FGPGTAMMAP--DNRTAYVLNNHYGDIYGIDLDTCKNTF--   76 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSC-CSSCEEEECT--TSSEEEEEETTTTEEEEEETTTTEEEE--
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCC-CCcceEEECC--CCCEEEEEECCCCcEEEEeCccCeeee--
Confidence            57899999999999999999999999999998875432 3478999999  998875 56678999999999886543  


Q ss_pred             eeeeecc--e----eeEEEeeeeecccccc-----------ccCCCCcceeeccCCceeee---cCCCCCC--ceeccCC
Q 021291          103 SLTIKTN--S----YHFCKLSLVKEPYANA-----------KQANEPKDCYEREVGETVDT---DSLCDSK--DDVPAEG  160 (314)
Q Consensus       103 ~~~~~~~--~----~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~  160 (314)
                      .+.....  .    .....+++.+......           ........+++.........   ...+...  +.+++++
T Consensus        77 ~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (346)
T d1jmxb_          77 HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG  156 (346)
T ss_dssp             EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTS
T ss_pred             eecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCC
Confidence            1111110  0    0111222211111100           01111122233322221110   0011111  4455555


Q ss_pred             CceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcC---------CCCCcee--eeEEEecCCCCCCceEEEEeec
Q 021291          161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFS---------SKGRGMC--MAVQAYLPSKSQGFVNVLAGYE  229 (314)
Q Consensus       161 ~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~---------~~~~~~~--~~~~~~~p~~~~g~~~l~~g~~  229 (314)
                       .+++ ++   +.+.+||+.+++.+..+............         ......+  .......+.   ....++++..
T Consensus       157 -~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  228 (346)
T d1jmxb_         157 -SLYV-AG---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKD---DKQDPATADL  228 (346)
T ss_dssp             -CEEE-ES---SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC----------CCCEE
T ss_pred             -EEEE-eC---CcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeecc---CceeEeeccC
Confidence             3443 32   45899999998887776521110000000         0000000  000001111   1114455666


Q ss_pred             CCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe------eeeeeecCCCceec
Q 021291          230 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF------GIGFVCDQEGNKFG  303 (314)
Q Consensus       230 dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~------~~~~~~~~~~~~~~  303 (314)
                      ++.+.+||..+..........|...+..+.+++++.+++... ++.|++||+.+++.+..      ...++++|+|..+.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~  307 (346)
T d1jmxb_         229 LYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLY  307 (346)
T ss_dssp             EEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEE
T ss_pred             CceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEE
Confidence            778999999884444555667888999999999988887765 45799999999987765      34577888887664


Q ss_pred             e
Q 021291          304 T  304 (314)
Q Consensus       304 ~  304 (314)
                      .
T Consensus       308 v  308 (346)
T d1jmxb_         308 L  308 (346)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.69  E-value=2.9e-15  Score=119.91  Aligned_cols=215  Identities=12%  Similarity=0.039  Sum_probs=133.4

Q ss_pred             CCceEEecC--CCCceeEEEEccCCCEE-EEecCCCeEEEEeCCCCeEEEEEeccCCc---ccEEEEEEcccCCCCeEEE
Q 021291            8 PDPVAVLRG--HRASVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHSAA---HGIVSVATGPSIGLNKVIS   81 (314)
Q Consensus         8 ~~~~~~l~~--h~~~v~~~~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~l~s   81 (314)
                      .+.++++..  +...+.+++|+|||++| ++++.++.|.+||+.+++.+..+..+...   ..+..++|+|  +++.+++
T Consensus        21 ~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~--dg~~l~~   98 (337)
T d1pbyb_          21 MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP--DGKTLAI   98 (337)
T ss_dssp             TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECT--TSSEEEE
T ss_pred             CeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcC--CCcEEEE
Confidence            466777764  34568899999999987 56788999999999999999888765432   2245789999  9999887


Q ss_pred             eec------------CCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccc----------------------
Q 021291           82 QGR------------DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAK----------------------  127 (314)
Q Consensus        82 ~~~------------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------  127 (314)
                      +..            +..+.+||..+++...  .+.... ......+++.+.......                      
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~~d~~~~~~~~~~~~~~~  175 (337)
T d1pbyb_          99 YESPVRLELTHFEVQPTRVALYDAETLSRRK--AFEAPR-QITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSW  175 (337)
T ss_dssp             EEEEEEECSSCEEECCCEEEEEETTTTEEEE--EEECCS-SCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTT
T ss_pred             eecCCcceeeeccccccceeeccccCCeEEE--eccccC-CceEEEEcCCCCEEEEEcCCcceeeeecCcEEEEeecCCc
Confidence            763            5788899988775432  111110 011111111111000000                      


Q ss_pred             -------c-------CCC--------------------------CcceeeccCCceeeecCCCCCC----ceeccCCCce
Q 021291          128 -------Q-------ANE--------------------------PKDCYEREVGETVDTDSLCDSK----DDVPAEGPKY  163 (314)
Q Consensus       128 -------~-------~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  163 (314)
                             .       ...                          ....++.............+..    .++++++..+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (337)
T d1pbyb_         176 EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA  255 (337)
T ss_dssp             TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEE
T ss_pred             cccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEE
Confidence                   0       000                          0000111111111111111222    4566666544


Q ss_pred             EEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCC
Q 021291          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI  243 (314)
Q Consensus       164 ~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~  243 (314)
                      +  .+  ++.|++||+++++.+..+..             ...+.++. |+|+   |+ +|++++.++.|++||..+ .+
T Consensus       256 ~--~~--~~~i~v~d~~~~~~~~~~~~-------------~~~~~~~~-~s~d---G~-~l~v~~~~~~i~v~D~~t-~~  312 (337)
T d1pbyb_         256 F--GA--YNVLESFDLEKNASIKRVPL-------------PHSYYSVN-VSTD---GS-TVWLGGALGDLAAYDAET-LE  312 (337)
T ss_dssp             E--EE--ESEEEEEETTTTEEEEEEEC-------------SSCCCEEE-ECTT---SC-EEEEESBSSEEEEEETTT-CC
T ss_pred             E--Ec--cccEEEEECCCCcEEEEEcC-------------CCCEEEEE-ECCC---CC-EEEEEeCCCcEEEEECCC-Cc
Confidence            3  22  58899999999999888762             23566777 9998   55 888999999999999998 77


Q ss_pred             ceEeeec
Q 021291          244 PLTAMKV  250 (314)
Q Consensus       244 ~~~~~~~  250 (314)
                      .+.+++.
T Consensus       313 ~v~~i~~  319 (337)
T d1pbyb_         313 KKGQVDL  319 (337)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEC
Confidence            7877764

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.68  E-value=2.6e-14  Score=116.32  Aligned_cols=234  Identities=8%  Similarity=-0.066  Sum_probs=135.2

Q ss_pred             CCCCceEEecCCCCceeEEEEccCCCEEEEec----------CCCeEEEEeCCCCeEEEEEeccCCc-------------
Q 021291            6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGT----------TGGELRIWDTVQHRTVSSSWVHSAA-------------   62 (314)
Q Consensus         6 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~~~~-------------   62 (314)
                      ..++.+.++.++..+  .++|+|||++|++++          .++.|.+||..+++.+..+..+...             
T Consensus        55 ~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (373)
T d2madh_          55 GSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNAN  132 (373)
T ss_pred             CCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEE
Confidence            345667777666544  799999999998874          4678999999988776544322110             


Q ss_pred             --------------------------------ccEEEEEEcccCCCCe-EEEeecCCeEEEEeCCCCCCCCCCeeeeecc
Q 021291           63 --------------------------------HGIVSVATGPSIGLNK-VISQGRDGTVKCWDIENGGLSSNPSLTIKTN  109 (314)
Q Consensus        63 --------------------------------~~v~~~~~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~  109 (314)
                                                      ....++.++|  +++. +++.+.|+++.+||...++...  .......
T Consensus       133 s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~g~~~~v~~~~dg~~~~~~~~~~~~~~--~~~~~~~  208 (373)
T d2madh_         133 TPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHP--GAPSTFYLLCAQGGLAKTDHAGGAAGA--GLVGAML  208 (373)
T ss_pred             EeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEEEec--CCCcEEEEEcCCCeEEEEEcCCceeeE--EEeeecc
Confidence                                            1123444555  4443 4566777788888777665432  1110000


Q ss_pred             ----eeeEEEeeeeeccccccccCCCCcceeeccCCce-------------eeec-CCCCCC-ceeccCCCceEEE----
Q 021291          110 ----SYHFCKLSLVKEPYANAKQANEPKDCYEREVGET-------------VDTD-SLCDSK-DDVPAEGPKYMAV----  166 (314)
Q Consensus       110 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~-~~~~~~-~~~~~~~~~~~~~----  166 (314)
                          ....................+.....++......             .... ...... +++++++..++..    
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  288 (373)
T d2madh_         209 TAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQ  288 (373)
T ss_pred             ccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCC
Confidence                0000111111111111111122222222222110             0000 011111 5666666544321    


Q ss_pred             ----eecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCce-EEEEeecCCcEEEEEccCC
Q 021291          167 ----AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFV-NVLAGYEDGSILVWDIRNP  241 (314)
Q Consensus       167 ----~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~-~l~~g~~dg~i~vwd~~~~  241 (314)
                          ....++.+.+||..+++.+..+..             ...+..+. |+||   |+. ++++++.|+.|++||+.+ 
T Consensus       289 ~~~~~~~~~~~v~~~d~~t~~~~~~~~~-------------~~~~~~~a-~spD---G~~~l~vt~~~d~~v~v~D~~t-  350 (373)
T d2madh_         289 SAWKLHAAAKEVTSVTGLVGQTSSQISL-------------GHDVDAIS-VAQD---GGPDLYALSAGTEVLHIYDAGA-  350 (373)
T ss_pred             ceEEeecCCCeEEEEECCCCcEEEEecC-------------CCCeeEEE-ECCC---CCEEEEEEeCCCCeEEEEECCC-
Confidence                334467899999999998887762             23566777 9998   543 457889999999999999 


Q ss_pred             CCceEeeecCCcceEEEEEeCC
Q 021291          242 GIPLTAMKVHLEPVLCLSIDES  263 (314)
Q Consensus       242 ~~~~~~~~~h~~~v~~~~~~~~  263 (314)
                      ++.+..+..+....+.|++.++
T Consensus       351 g~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         351 GDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             CCEEEEECCCCCCCcEEEEecC
Confidence            8999999988888888887554

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=4.3e-14  Score=112.94  Aligned_cols=257  Identities=9%  Similarity=0.089  Sum_probs=150.3

Q ss_pred             EEEEecCCCeEEEEeCCCCeEEEEEe--ccCCcccEEEEEEcccCCCCeEEEee-cCCeEEEEeCCCCCCCCCCeeeeec
Q 021291           32 ILFAGTTGGELRIWDTVQHRTVSSSW--VHSAAHGIVSVATGPSIGLNKVISQG-RDGTVKCWDIENGGLSSNPSLTIKT  108 (314)
Q Consensus        32 ~l~s~~~dg~v~iwd~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~  108 (314)
                      .+++++.|++|++|+++....+..++  .+.  ..+..|+|+|  ||++|++++ .|+.|++|++.......+.......
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~--~~v~~la~sp--DG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~   81 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVP--GQVQPMVVSP--DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL   81 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECS--SCCCCEEECT--TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCC--CCEeEEEEeC--CCCEEEEEECCCCeEEEEEEeCCCCcEEEeeeccc
Confidence            45788899999999987654333333  344  4499999999  999886554 5899999999876543211111111


Q ss_pred             -ceeeEEEeeeeeccccccccCCCCcceeeccCCceeee-cCCCCC----CceeccCCCceEEEeecCcCeEEEEecCCC
Q 021291          109 -NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDT-DSLCDS----KDDVPAEGPKYMAVAGEQLSEVEIWDLNTA  182 (314)
Q Consensus       109 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~g~~d~~i~vwd~~~~  182 (314)
                       .......+++.+.........+.....+.......... ....+.    .+.++|+++.++. +...+..|.+|+....
T Consensus        82 ~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~-~~~~~~~i~~~~~~~~  160 (333)
T d1ri6a_          82 PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWV-PALKQDRICLFTVSDD  160 (333)
T ss_dssp             SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEE-EEGGGTEEEEEEECTT
T ss_pred             CCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeec-cccccceeeEEEeccC
Confidence             12222344444443333333344445555544432211 111111    1889999987665 4545678999998765


Q ss_pred             ceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceE---eee------cCCc
Q 021291          183 ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT---AMK------VHLE  253 (314)
Q Consensus       183 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~---~~~------~h~~  253 (314)
                      .........      ............+. |+++   +...+.+....+...+|+.......+.   .+.      ....
T Consensus       161 ~~~~~~~~~------~~~~~~g~~p~~i~-~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (333)
T d1ri6a_         161 GHLVAQDPA------EVTTVEGAGPRHMV-FHPN---EQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTR  230 (333)
T ss_dssp             SCEEEEEEE------EEECSTTCCEEEEE-ECTT---SSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCC
T ss_pred             Ccceeeece------eeeeecCCCccEEE-Eecc---ceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccc
Confidence            433322110      00011122345566 9887   443556666777888998765232221   111      1234


Q ss_pred             ceEEEEEeCCCCeE-EEecCCCcEEEEecCCCeeeEee----------eeeeecCCCceec
Q 021291          254 PVLCLSIDESCNGG-ISGGADQKIVLYNLDHSTYVLFG----------IGFVCDQEGNKFG  303 (314)
Q Consensus       254 ~v~~~~~~~~~~~l-~s~s~dg~i~iw~~~~~~~~~~~----------~~~~~~~~~~~~~  303 (314)
                      ....++++++++++ +++..++.+.+|++.........          .+++++|+|+.+.
T Consensus       231 ~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~  291 (333)
T d1ri6a_         231 WAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLI  291 (333)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEE
T ss_pred             cceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEE
Confidence            56778899999866 45566789999998866544321          2467889998654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.65  E-value=2.2e-14  Score=116.71  Aligned_cols=257  Identities=6%  Similarity=-0.085  Sum_probs=147.2

Q ss_pred             CCceEEecCCCCceeEEEEccCCCEEEEe----------cCCCeEEEEeCCCCeEEEEEeccCCc-----ccEEEEEEcc
Q 021291            8 PDPVAVLRGHRASVTDVCFHQTKPILFAG----------TTGGELRIWDTVQHRTVSSSWVHSAA-----HGIVSVATGP   72 (314)
Q Consensus         8 ~~~~~~l~~h~~~v~~~~~~~~~~~l~s~----------~~dg~v~iwd~~~~~~~~~~~~~~~~-----~~v~~~~~~~   72 (314)
                      ++.+..+.++...  .++|+|||+.|++.          +.|+.|++||..+++.+..+..+...     .....++|+|
T Consensus        56 ~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~Sp  133 (368)
T d1mdah_          56 GVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA  133 (368)
T ss_dssp             TEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECT
T ss_pred             CcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECC
Confidence            3445555554443  58999999988864          35788999999999999888755321     1124689999


Q ss_pred             cCCCCeEEEee-cCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeee-----
Q 021291           73 SIGLNKVISQG-RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDT-----  146 (314)
Q Consensus        73 ~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  146 (314)
                        ||++|+.+. .++.+.+||+.+++...  ........    .+.+............+....+..........     
T Consensus       134 --DGk~l~va~~~~~~v~~~d~~~~~~~~--~~~~~~~~----~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~  205 (368)
T d1mdah_         134 --SSACLLFFLFGSSAAAGLSVPGASDDQ--LTKSASCF----HIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQ  205 (368)
T ss_dssp             --TSSCEEEEECSSSCEEEEEETTTEEEE--EEECSSCC----CCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCC
T ss_pred             --CCCEEEEEeCCCCeEEEEECCCCcEeE--EeeccCcc----eEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecc
Confidence              999998776 57999999999986543  11111111    11111111112222223333333322211100     


Q ss_pred             cCCCCCC----ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCC------CCCceeeeEEEecCC
Q 021291          147 DSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSS------KGRGMCMAVQAYLPS  216 (314)
Q Consensus       147 ~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~------~~~~~~~~~~~~~p~  216 (314)
                      ....+..    ..+.+++.  ++.+.  ++.+.+++.............      .+..      ........+. ++|+
T Consensus       206 ~~~~~~~~~~~~~~~~~g~--~~~~~--~~~v~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~a-~~~~  274 (368)
T d1mdah_         206 CTGAQNCSSQAAQANYPGM--LVWAV--ASSILQGDIPAAGATMKAAID------GNESGRKADNFRSAGFQMVA-KLKN  274 (368)
T ss_dssp             SCTTSCBCSCCEEETTTTE--EEECB--SSCCEEEECCSSCCEEECCCC------SSCTHHHHTTEEECSSSCEE-EETT
T ss_pred             cccccccceeecccccCcE--EEEec--CCCEEEEeecCCceEEEeecc------cccceeeeeeecCCCceeEE-EcCC
Confidence            1111111    44555553  22222  366777777655443222110      0000      0001112233 7777


Q ss_pred             CCCCceEEEEeecC--------CcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCe--EEEecCCCcEEEEecCCCee
Q 021291          217 KSQGFVNVLAGYED--------GSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNG--GISGGADQKIVLYNLDHSTY  286 (314)
Q Consensus       217 ~~~g~~~l~~g~~d--------g~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--l~s~s~dg~i~iw~~~~~~~  286 (314)
                         +..+++....+        ..|.+||..+ ++.+..+.. ...+.+++|+|||+.  +++++.|+.|++||..+++.
T Consensus       275 ---~~~~~v~~~~~~~~~~~~~~~v~v~D~~t-~~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~  349 (368)
T d1mdah_         275 ---TDGIMILTVEHSRSCLAAAENTSSVTASV-GQTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQD  349 (368)
T ss_dssp             ---TTEEEEEEEECSSCTTSCEEEEEEEESSS-CCEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred             ---CCEEEEEecCCCceeecCCceEEEEECCC-CcEeEEecC-CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCE
Confidence               33233333222        3589999998 777777763 467889999999973  57788899999999999998


Q ss_pred             eEee
Q 021291          287 VLFG  290 (314)
Q Consensus       287 ~~~~  290 (314)
                      +..+
T Consensus       350 ~~~i  353 (368)
T d1mdah_         350 QSSV  353 (368)
T ss_dssp             EEEC
T ss_pred             EEEE
Confidence            7654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.58  E-value=2e-13  Score=110.09  Aligned_cols=209  Identities=8%  Similarity=-0.092  Sum_probs=129.4

Q ss_pred             ceeEEEEccCCCEEEEe-----cCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEee----------c
Q 021291           20 SVTDVCFHQTKPILFAG-----TTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG----------R   84 (314)
Q Consensus        20 ~v~~~~~~~~~~~l~s~-----~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----------~   84 (314)
                      ++.-.+.+||++.++..     ..+++|.+||..+++.+.++..+.    +..++|+|  |+++|+.++          .
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~----~~~~a~Sp--Dg~~l~v~~~~~~~~~~g~~   76 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF----LPNPVVAD--DGSFIAHASTVFSRIARGER   76 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECS----SCEEEECT--TSSCEEEEEEEEEETTEEEE
T ss_pred             CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCC----CCceEEcC--CCCEEEEEeCCCccccccCC
Confidence            34444668999988764     346689999999999999887665    33799999  999887643          4


Q ss_pred             CCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceE
Q 021291           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM  164 (314)
Q Consensus        85 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (314)
                      |+.|++||..+++...  ...............+                                 ..++|+++++.++
T Consensus        77 d~~v~v~D~~t~~~~~--~~~~~~~~~~~~~~~~---------------------------------~~~~~s~dg~~~~  121 (355)
T d2bbkh_          77 TDYVEVFDPVTLLPTA--DIELPDAPRFLVGTYP---------------------------------WMTSLTPDGKTLL  121 (355)
T ss_dssp             EEEEEEECTTTCCEEE--EEEETTCCCCCBSCCG---------------------------------GGEEECTTSSEEE
T ss_pred             CCEEEEEECCCCCEEE--EEecCCcceeecCCCC---------------------------------ceEEEecCCCeeE
Confidence            7899999999986533  1111110000000000                                 0067999999888


Q ss_pred             EEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCC---CceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCC
Q 021291          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKG---RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP  241 (314)
Q Consensus       165 ~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~---~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~  241 (314)
                      ++..+.+..+.+||..+++.+..+..        +....   ......+. ++++   +..+++....++.+.+++... 
T Consensus       122 v~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~-~~~d---g~~~~v~~~~~~~~~~~~~~~-  188 (355)
T d2bbkh_         122 FYQFSPAPAVGVVDLEGKAFKRMLDV--------PDCYHIFPTAPDTFFM-HCRD---GSLAKVAFGTEGTPEITHTEV-  188 (355)
T ss_dssp             EEECSSSCEEEEEETTTTEEEEEEEC--------CSEEEEEEEETTEEEE-EETT---SCEEEEECCSSSCCEEEECCC-
T ss_pred             EecCCCCceeeeeecCCCcEeeEEec--------CCcceEeecCCcceEE-EcCC---CCEEEEEecCCCeEEEEeccc-
Confidence            76666678999999999988877762        10000   00011111 3333   221222233333333333332 


Q ss_pred             CCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeee
Q 021291          242 GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYV  287 (314)
Q Consensus       242 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~  287 (314)
                      ..     ..+...+....+.+++..++.++.++.+++|++..++..
T Consensus       189 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  229 (355)
T d2bbkh_         189 FH-----PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAK  229 (355)
T ss_dssp             CS-----CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCE
T ss_pred             cc-----ceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEE
Confidence            11     123344556678888888899999999999999887643

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.42  E-value=5.3e-12  Score=102.74  Aligned_cols=229  Identities=12%  Similarity=-0.005  Sum_probs=132.9

Q ss_pred             EEEecCCCeEEEEeCCCCeEEEEEeccC----------------------------CcccEEEEEEcccCCCCeEEEe-e
Q 021291           33 LFAGTTGGELRIWDTVQHRTVSSSWVHS----------------------------AAHGIVSVATGPSIGLNKVISQ-G   83 (314)
Q Consensus        33 l~s~~~dg~v~iwd~~~~~~~~~~~~~~----------------------------~~~~v~~~~~~~~~~~~~l~s~-~   83 (314)
                      ++|++.+|+|+||++.+++.++++....                            +--......++|  ||++|+.. .
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtp--DGr~lfV~d~   91 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRY--DGKYLFINDK   91 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEE--EEEEEEEEET
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccC--CCCEEEEEcC
Confidence            5788899999999999999988874210                            001144455678  89988655 4


Q ss_pred             cCCeEEEEeCCCCCCCCCCeeeee-cceeeEEEeeeeeccccccccCCCC------------------cceeeccCCcee
Q 021291           84 RDGTVKCWDIENGGLSSNPSLTIK-TNSYHFCKLSLVKEPYANAKQANEP------------------KDCYEREVGETV  144 (314)
Q Consensus        84 ~dg~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~  144 (314)
                      .+.+|.++|+++++..+  ...+. ....+...+++.+............                  ...++.......
T Consensus        92 ~~~rVavIDl~t~k~~~--ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~  169 (441)
T d1qnia2          92 ANTRVARIRLDIMKTDK--ITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVA  169 (441)
T ss_dssp             TTTEEEEEETTTTEEEE--EEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEE
T ss_pred             CCCEEEEEECCCCcEee--EEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceee
Confidence            68899999999987543  33332 2334444555444322211111000                  011222332222


Q ss_pred             eec-CCCCCC-ceeccCCCceEEEeecC---------------------------------------cCeEEEEecCCCc
Q 021291          145 DTD-SLCDSK-DDVPAEGPKYMAVAGEQ---------------------------------------LSEVEIWDLNTAE  183 (314)
Q Consensus       145 ~~~-~~~~~~-~~~~~~~~~~~~~~g~~---------------------------------------d~~i~vwd~~~~~  183 (314)
                      ... ..+... ++++|+|+.+++++-..                                       ++.+.+++.....
T Consensus       170 ~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~  249 (441)
T d1qnia2         170 WQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESE  249 (441)
T ss_dssp             EEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCS
T ss_pred             EEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCc
Confidence            221 122222 88888888766543211                                       2334444444444


Q ss_pred             eeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCC-------ceEeeecCCc---
Q 021291          184 RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI-------PLTAMKVHLE---  253 (314)
Q Consensus       184 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~-------~~~~~~~h~~---  253 (314)
                      .+..++.        .     .....+. ++||   |+++++++..+++|.|||+.+..+       ....+.++..   
T Consensus       250 v~~~IPv--------g-----ksPhGv~-vSPD---Gkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~gl  312 (441)
T d1qnia2         250 FTRYIPV--------P-----KNPHGLN-TSPD---GKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGL  312 (441)
T ss_dssp             SEEEECC--------B-----SSCCCEE-ECTT---SCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCS
T ss_pred             eEEEEeC--------C-----CCccCce-ECCC---CCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeeccccc
Confidence            4444441        1     1234455 9998   775778899999999999864111       1112222221   


Q ss_pred             ceEEEEEeCCCCeEEEecCCCcEEEEecC
Q 021291          254 PVLCLSIDESCNGGISGGADQKIVLYNLD  282 (314)
Q Consensus       254 ~v~~~~~~~~~~~l~s~s~dg~i~iw~~~  282 (314)
                      .....+|+++|..+.|...|..|..|+++
T Consensus       313 gplh~~fd~~g~~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         313 GPLHTTFDGRGNAYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             CEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred             CcccceecCCceEEEcccccceEEEeccc
Confidence            34556899999989999999999999985

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.31  E-value=2.9e-11  Score=98.40  Aligned_cols=239  Identities=10%  Similarity=0.059  Sum_probs=136.2

Q ss_pred             CCCCceeEEEEccCCCEEEEe-cCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCe--EEEeecCC------
Q 021291           16 GHRASVTDVCFHQTKPILFAG-TTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNK--VISQGRDG------   86 (314)
Q Consensus        16 ~h~~~v~~~~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--l~s~~~dg------   86 (314)
                      .|........++|||++|+.. ..+++|.++|+++++....+..... ..+..++|+|  +++.  ++..+.+.      
T Consensus        69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g-~gphgi~~sp--dg~t~YV~~~~~~~v~~~~d  145 (441)
T d1qnia2          69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNV-QAIHGLRLQK--VPKTNYVFCNAEFVIPQPND  145 (441)
T ss_dssp             BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTC-CCEEEEEECC--SSBCCEEEEEECSCEESSCS
T ss_pred             ccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCC-CCccceEEec--cCCEEEEEeccCCcccccCc
Confidence            355566667778999988654 5788999999999998887765322 4589999999  7774  43333331      


Q ss_pred             -----------eEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeecccccc-----------------------------
Q 021291           87 -----------TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANA-----------------------------  126 (314)
Q Consensus        87 -----------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------  126 (314)
                                 .+..+|..+.+...  ...... ......+++.+......                             
T Consensus       146 g~~~~~~~~~~~~~~iD~~t~~v~~--qI~v~~-~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~  222 (441)
T d1qnia2         146 GTDFSLDNSYTMFTAIDAETMDVAW--QVIVDG-NLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERI  222 (441)
T ss_dssp             SSCCCGGGEEEEEEEEETTTCSEEE--EEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHH
T ss_pred             ccccccccccceEEeecCccceeeE--EEecCC-CccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccce
Confidence                       23457777665422  111111 11112222211110000                             


Q ss_pred             ---------ccC-CCCcceeeccCC-ceeeecCCCCCC--ceeccCCCceEEEeecCcCeEEEEecCCCcee--------
Q 021291          127 ---------KQA-NEPKDCYEREVG-ETVDTDSLCDSK--DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERC--------  185 (314)
Q Consensus       127 ---------~~~-~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~--------  185 (314)
                               ... +.....++.... ........+...  +.++|||+++++ ++..+++|.+||+.+....        
T Consensus       223 ~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~-~~~~~~tvsv~d~~k~~~~~~~~~~~~  301 (441)
T d1qnia2         223 AAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIA-NGKLSPTVSVIAIDKLDDLFEDKIELR  301 (441)
T ss_dssp             HHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEE-ECTTSSBEEEEEGGGHHHHTTTSSCGG
T ss_pred             EEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEE-eCCcCCcEEEEEeehhhhHhhccCCcc
Confidence                     000 011111111111 122222222222  999999998765 6888999999998753321        


Q ss_pred             eeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccC---------CCCceEee-----ecC
Q 021291          186 TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN---------PGIPLTAM-----KVH  251 (314)
Q Consensus       186 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~---------~~~~~~~~-----~~h  251 (314)
                      ..+.        ++.....+ ....+ |.++   |. .+.+...|..|..|++..         ....+..+     .+|
T Consensus       302 ~~~~--------~~~~~glg-plh~~-fd~~---g~-~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH  367 (441)
T d1qnia2         302 DTIV--------AEPELGLG-PLHTT-FDGR---GN-AYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGH  367 (441)
T ss_dssp             GGEE--------ECCBCCSC-EEEEE-ECSS---SE-EEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEE
T ss_pred             eEEE--------eecccccC-cccce-ecCC---ce-EEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCC
Confidence            1111        12111111 22334 8887   55 788889999999999741         11233334     467


Q ss_pred             CcceEEEEEeCCCCeEEEe---cCCCc
Q 021291          252 LEPVLCLSIDESCNGGISG---GADQK  275 (314)
Q Consensus       252 ~~~v~~~~~~~~~~~l~s~---s~dg~  275 (314)
                      ...+.+.+++|+|++|+++   |.|..
T Consensus       368 ~~~~~~~t~~pdGk~l~s~~k~s~dr~  394 (441)
T d1qnia2         368 NHASLTESRDADGKWLVVLSKFSKDRF  394 (441)
T ss_dssp             EEETTTTSTTCCCCEEEEEESCCGGGS
T ss_pred             CccccccccCCCCcEEEecCccccccC
Confidence            7777777889999999999   55543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.29  E-value=2.8e-10  Score=91.98  Aligned_cols=204  Identities=5%  Similarity=-0.119  Sum_probs=117.8

Q ss_pred             eEEEEccCCCEEEEec-CCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCC
Q 021291           22 TDVCFHQTKPILFAGT-TGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSS  100 (314)
Q Consensus        22 ~~~~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~  100 (314)
                      ..++|+|||++|+++. .++.+.+||+.+++....+..+...  .    +.|. ....++..+.||++.+|+........
T Consensus       127 ~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~--~----~~~~-~~~~~v~~~~Dg~~~~~~~~~~~~~~  199 (368)
T d1mdah_         127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCF--H----IHPG-AAATHYLGSCPASLAASDLAAAPAAA  199 (368)
T ss_dssp             TSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCC--C----CEEE-ETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred             cceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcc--e----EccC-CCceEEEEcCCCCEEEEEecCCceee
Confidence            4689999999888775 5799999999999999888766432  1    1121 23566777788888888876554321


Q ss_pred             CCeeeeecc--eeeEEEeeeeecccc-ccccCCCCcceeeccCCceee-ecCC--------------CCCCceeccCCCc
Q 021291          101 NPSLTIKTN--SYHFCKLSLVKEPYA-NAKQANEPKDCYEREVGETVD-TDSL--------------CDSKDDVPAEGPK  162 (314)
Q Consensus       101 ~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~--------------~~~~~~~~~~~~~  162 (314)
                        .......  ............... .....++.....++....... ....              +...+++++++..
T Consensus       200 --~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~  277 (368)
T d1mdah_         200 --GIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDG  277 (368)
T ss_dssp             --EECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTE
T ss_pred             --eeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCE
Confidence              0000000  000000000000000 011111222222222221111 0111              1122788888887


Q ss_pred             eEEEeecC-------cCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCc-eEEEEeecCCcEE
Q 021291          163 YMAVAGEQ-------LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGF-VNVLAGYEDGSIL  234 (314)
Q Consensus       163 ~~~~~g~~-------d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~-~~l~~g~~dg~i~  234 (314)
                      ++++....       ...|.+||..+++.+..+..             ...+..+. |+||   |+ .+++++..++.|+
T Consensus       278 ~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~-------------~~~~~~~a-~spD---G~~~ly~s~~~~~~v~  340 (368)
T d1mdah_         278 IMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN-------------GHDSDAII-AAQD---GASDNYANSAGTEVLD  340 (368)
T ss_dssp             EEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE-------------EEEECEEE-ECCS---SSCEEEEEETTTTEEE
T ss_pred             EEEEecCCCceeecCCceEEEEECCCCcEeEEecC-------------CCceeEEE-ECCC---CCEEEEEEeCCCCeEE
Confidence            76543221       24699999999998877762             23567787 9998   44 2567778899999


Q ss_pred             EEEccCCCCceEeeecCC
Q 021291          235 VWDIRNPGIPLTAMKVHL  252 (314)
Q Consensus       235 vwd~~~~~~~~~~~~~h~  252 (314)
                      +||..+ ++.+.++....
T Consensus       341 v~D~~t-gk~~~~i~~g~  357 (368)
T d1mdah_         341 IYDAAS-DQDQSSVELDK  357 (368)
T ss_dssp             EEESSS-CEEEEECCCCS
T ss_pred             EEECCC-CCEEEEEECCC
Confidence            999998 88888887543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.24  E-value=1.6e-08  Score=79.13  Aligned_cols=221  Identities=10%  Similarity=-0.002  Sum_probs=133.0

Q ss_pred             CceEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeE
Q 021291            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (314)
Q Consensus         9 ~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v   88 (314)
                      +.+..+... ..+..++++|||+++++...+++|..|+.. ++.. .+....  ..+.+++|.+  +++++++...++.+
T Consensus        19 ~v~~~~p~~-~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~~-~~~~~~--~~~~gla~~~--dG~l~v~~~~~~~~   91 (302)
T d2p4oa1          19 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPD-GNQQ-IHATVE--GKVSGLAFTS--NGDLVATGWNADSI   91 (302)
T ss_dssp             EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEEECS--SEEEEEEECT--TSCEEEEEECTTSC
T ss_pred             cEEEECCCC-CCcCCEEECCCCCEEEEeCCCCEEEEEeCC-CCEE-EEEcCC--CCcceEEEcC--CCCeEEEecCCceE
Confidence            444555432 258899999999999999999999999855 4433 233333  4489999999  99988888888888


Q ss_pred             EEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEee
Q 021291           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG  168 (314)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  168 (314)
                      ..|+.....-................                                       +++.+++. +++ +.
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~n~---------------------------------------i~~~~~g~-~~v-~~  130 (302)
T d2p4oa1          92 PVVSLVKSDGTVETLLTLPDAIFLNG---------------------------------------ITPLSDTQ-YLT-AD  130 (302)
T ss_dssp             EEEEEECTTSCEEEEEECTTCSCEEE---------------------------------------EEESSSSE-EEE-EE
T ss_pred             EEEEecccccceeeccccCCccccce---------------------------------------eEEccCCC-EEe-ec
Confidence            88887654321100000000000000                                       45667774 333 45


Q ss_pred             cCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCce-Ee
Q 021291          169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL-TA  247 (314)
Q Consensus       169 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~-~~  247 (314)
                      +.++.+..+|...+................+.  .......+. +..     ..++++.+..+.|+.++........ ..
T Consensus       131 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ngi~-~~~-----~~l~~~~~~~~~i~~~~~~~~~~~~~~~  202 (302)
T d2p4oa1         131 SYRGAIWLIDVVQPSGSIWLEHPMLARSNSES--VFPAANGLK-RFG-----NFLYVSNTEKMLLLRIPVDSTDKPGEPE  202 (302)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECGGGSCSSTTC--CSCSEEEEE-EET-----TEEEEEETTTTEEEEEEBCTTSCBCCCE
T ss_pred             cccccceeeeccCCcceeEecCCccceeeccC--ccccccccc-ccC-----CceeeecCCCCeEEeccccccccccccc
Confidence            55788888888876543332211100100111  111223333 432     2267777888999999887532221 11


Q ss_pred             eecCCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCe
Q 021291          248 MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST  285 (314)
Q Consensus       248 ~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~  285 (314)
                      ..........++++++|.++++...++.|..++.+...
T Consensus       203 ~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~  240 (302)
T d2p4oa1         203 IFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRST  240 (302)
T ss_dssp             EEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCE
T ss_pred             cccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCE
Confidence            11223445679999999988888888999999877554

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.21  E-value=8.3e-09  Score=86.01  Aligned_cols=79  Identities=10%  Similarity=-0.021  Sum_probs=63.6

Q ss_pred             ecCCCCceeEEEEccCCCEEEEec---------CCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeec
Q 021291           14 LRGHRASVTDVCFHQTKPILFAGT---------TGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (314)
Q Consensus        14 l~~h~~~v~~~~~~~~~~~l~s~~---------~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (314)
                      |..|...|.++.|||||++|+.++         .++.+.|||+.+++. ..+..+.  ..+..+.|+|  ||+.++... 
T Consensus        57 ~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~--~~~~~~~~SP--DG~~ia~~~-  130 (470)
T d2bgra1          57 FDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIP--NNTQWVTWSP--VGHKLAYVW-  130 (470)
T ss_dssp             TTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCC--TTEEEEEECS--STTCEEEEE-
T ss_pred             hhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCC--cccccccccc--CcceeeEee-
Confidence            345668899999999999998874         367889999998764 4466666  4599999999  999999854 


Q ss_pred             CCeEEEEeCCCCCC
Q 021291           85 DGTVKCWDIENGGL   98 (314)
Q Consensus        85 dg~v~iwd~~~~~~   98 (314)
                      ++.+.+|+..+++.
T Consensus       131 ~~~l~~~~~~~g~~  144 (470)
T d2bgra1         131 NNDIYVKIEPNLPS  144 (470)
T ss_dssp             TTEEEEESSTTSCC
T ss_pred             cccceEEECCCCce
Confidence            67899999887754

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.20  E-value=3.4e-08  Score=75.64  Aligned_cols=228  Identities=9%  Similarity=-0.050  Sum_probs=127.8

Q ss_pred             EEecCCCCceeEEEEccCCCEEEEecCC---CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeec-CCe
Q 021291           12 AVLRGHRASVTDVCFHQTKPILFAGTTG---GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-DGT   87 (314)
Q Consensus        12 ~~l~~h~~~v~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~   87 (314)
                      +.+..+...+..-+|||||+.||-....   ..+.+.+...+.... +..+.  .......|+|  ++..++.... ++.
T Consensus        32 ~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~sp--dg~~i~~~~~~~~~  106 (269)
T d2hqsa1          32 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFP--RHNGAPAFSP--DGSKLAFALSKTGS  106 (269)
T ss_dssp             EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-EECCS--SCEEEEEECT--TSSEEEEEECTTSS
T ss_pred             EEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeE-Eeeee--cccccceecC--CCCeeeEeeecCCc
Confidence            3444456778899999999999865433   357777776655543 33344  4478899999  9888886553 333


Q ss_pred             EEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEe
Q 021291           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA  167 (314)
Q Consensus        88 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (314)
                      ..++........   ............  .                                    ..+++++...+++ 
T Consensus       107 ~~~~~~~~~~~~---~~~~~~~~~~~~--~------------------------------------~~~~~~~~~~~~~-  144 (269)
T d2hqsa1         107 LNLYVMDLASGQ---IRQVTDGRSNNT--E------------------------------------PTWFPDSQNLAFT-  144 (269)
T ss_dssp             CEEEEEETTTCC---EEECCCCSSCEE--E------------------------------------EEECTTSSEEEEE-
T ss_pred             cceeeccccccc---ceeeeecccccc--c------------------------------------cccccccccceec-
Confidence            333322221110   001000000000  0                                    2355666655553 


Q ss_pred             ecCcC--eEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCce
Q 021291          168 GEQLS--EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL  245 (314)
Q Consensus       168 g~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~  245 (314)
                      ...++  .|.+.++..+.......             ......... |+|+   ++.++......+...+|.........
T Consensus       145 ~~~~g~~~i~~~~~~~~~~~~~~~-------------~~~~~~~~~-~spd---g~~~~~~~~~~~~~~i~~~~~~~~~~  207 (269)
T d2hqsa1         145 SDQAGRPQVYKVNINGGAPQRITW-------------EGSQNQDAD-VSSD---GKFMVMVSSNGGQQHIAKQDLATGGV  207 (269)
T ss_dssp             ECTTSSCEEEEEETTSSCCEECCC-------------SSSEEEEEE-ECTT---SSEEEEEEECSSCEEEEEEETTTCCE
T ss_pred             ccccCCceEeeeecccccceeeec-------------ccccccccc-cccc---cceeEEEeecCCceeeeEeecccccc
Confidence            33344  45666666554322221             133445555 9998   55355555666666666655423333


Q ss_pred             EeeecCCcceEEEEEeCCCCeEEEecC---CCcEEEEecCCCeeeEeeeeeeecCCCceeceeeccc
Q 021291          246 TAMKVHLEPVLCLSIDESCNGGISGGA---DQKIVLYNLDHSTYVLFGIGFVCDQEGNKFGTTWHIR  309 (314)
Q Consensus       246 ~~~~~h~~~v~~~~~~~~~~~l~s~s~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  309 (314)
                       .+..+........|+|||+.|+-.+.   ...|.+++++.+.... +    ...++......|.++
T Consensus       208 -~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~-l----t~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         208 -QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKAR-L----PATDGQVKFPAWSPY  268 (269)
T ss_dssp             -EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEE-C----CCSSSEEEEEEECCC
T ss_pred             -eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-E----eCCCCcEEeEEeCCC
Confidence             33345566778899999998865443   3468899998765432 2    124555556678775

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.16  E-value=8.8e-08  Score=75.16  Aligned_cols=264  Identities=8%  Similarity=0.023  Sum_probs=143.8

Q ss_pred             CCCceEEecCCCCceeEEEEccCCCEEEEecC-------CCeEEEEeCCCCeEEEEEeccCC--cccEEEEEEcccCCCC
Q 021291            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTT-------GGELRIWDTVQHRTVSSSWVHSA--AHGIVSVATGPSIGLN   77 (314)
Q Consensus         7 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~~-------dg~v~iwd~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~   77 (314)
                      .+.....-.+ -.....++|.++|+++++...       +|+|..||..+++..........  ...-..++|.+  +++
T Consensus         7 ~~~~~~v~~~-~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~--dg~   83 (314)
T d1pjxa_           7 EPLFTKVTED-IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR--DAN   83 (314)
T ss_dssp             CCCCEEEECC-CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS--SSS
T ss_pred             CcceEEeecC-CCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeC--CCC
Confidence            3333333333 334677899999998776433       46799999887765443322111  11256899999  888


Q ss_pred             eEEEeecCCeEEEEeCCCCCCCCCCeeeeecc---eeeEEEeeeeecccc------------ccccCCCCcceeeccCCc
Q 021291           78 KVISQGRDGTVKCWDIENGGLSSNPSLTIKTN---SYHFCKLSLVKEPYA------------NAKQANEPKDCYEREVGE  142 (314)
Q Consensus        78 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~  142 (314)
                      .++.+...+.|...|......... .......   ......+...+....            ..........++.+....
T Consensus        84 ~l~vad~~~~i~~~~~~g~~~~~~-~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg  162 (314)
T d1pjxa_          84 QLFVADMRLGLLVVQTDGTFEEIA-KKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG  162 (314)
T ss_dssp             EEEEEETTTEEEEEETTSCEEECC-SBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS
T ss_pred             EEEEEECCCeEEEEeCCCcEEEEE-eccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC
Confidence            888888777888888876532110 0000000   011111111110000            000011122334333222


Q ss_pred             eeeec---CCCCCCceeccCCCc---eEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCC
Q 021291          143 TVDTD---SLCDSKDDVPAEGPK---YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPS  216 (314)
Q Consensus       143 ~~~~~---~~~~~~~~~~~~~~~---~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~  216 (314)
                      .....   +..-..++|+|+++.   .+.++.+..+.|..||+.....+.....-.     ..........-.++ +..+
T Consensus       163 ~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~-----~~~~~~~~~pdGia-vD~~  236 (314)
T d1pjxa_         163 QMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWG-----HIPGTHEGGADGMD-FDED  236 (314)
T ss_dssp             CEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEE-----ECCCCSSCEEEEEE-EBTT
T ss_pred             ceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEE-----EccccccccceeeE-EecC
Confidence            11111   111112788887651   233355667889998876432222111000     00111122334555 7766


Q ss_pred             CCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCC-eEEEecCCCcEEEEecCCCe
Q 021291          217 KSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHST  285 (314)
Q Consensus       217 ~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~dg~i~iw~~~~~~  285 (314)
                         |+ +.++....+.|.+||.+. ++.+..+.......++++|.++++ +++|.+.+|.|...++...-
T Consensus       237 ---Gn-lyVa~~~~g~I~~~dp~~-g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G  301 (314)
T d1pjxa_         237 ---NN-LLVANWGSSHIEVFGPDG-GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG  301 (314)
T ss_dssp             ---CC-EEEEEETTTEEEEECTTC-BSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred             ---Cc-EEEEEcCCCEEEEEeCCC-CEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCC
Confidence               66 666666788999999886 667777776667889999999886 55777888988888876443

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.11  E-value=3.8e-08  Score=75.11  Aligned_cols=222  Identities=10%  Similarity=0.005  Sum_probs=131.7

Q ss_pred             CceeEEEEccCCCEEEEe-cCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCC
Q 021291           19 ASVTDVCFHQTKPILFAG-TTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG   97 (314)
Q Consensus        19 ~~v~~~~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~   97 (314)
                      ..-..++++++|++.++. +..+.+..++..+..... +.. ........+++.+  +++.+++....+.+++++-.+..
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~-~~~-~~~~~p~gvav~~--~g~i~v~d~~~~~i~~~~~~~~~   89 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV-LPF-NGLYQPQGLAVDG--AGTVYVTDFNNRVVTLAAGSNNQ   89 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEE-CCC-CSCCSCCCEEECT--TCCEEEEETTTEEEEECTTCSCC
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEE-ecc-CCccCceEEEEcC--CCCEEEeeeeeceeeeeeeccce
Confidence            345899999999966654 556777777755432222 111 1112357889999  88877776666677766554432


Q ss_pred             CCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEE
Q 021291           98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIW  177 (314)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vw  177 (314)
                      ...    ..........                                       +++.++++ +++ +...+..+..+
T Consensus        90 ~~~----~~~~~~~p~~---------------------------------------iavd~~g~-i~v-~d~~~~~~~~~  124 (260)
T d1rwia_          90 TVL----PFDGLNYPEG---------------------------------------LAVDTQGA-VYV-ADRGNNRVVKL  124 (260)
T ss_dssp             EEC----CCCSCCSEEE---------------------------------------EEECTTCC-EEE-EEGGGTEEEEE
T ss_pred             eee----eeeeeeeccc---------------------------------------ccccccce-eEe-ecccccccccc
Confidence            211    1111110001                                       45667775 333 34445667777


Q ss_pred             ecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEE
Q 021291          178 DLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLC  257 (314)
Q Consensus       178 d~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~  257 (314)
                      +........ +...      +     ......++ +.|+   |+ ++++...++.|..+|.+. ..........-.....
T Consensus       125 ~~~~~~~~~-~~~~------~-----~~~p~~i~-~~~~---g~-~~v~~~~~~~i~~~d~~~-~~~~~~~~~~~~~p~g  186 (260)
T d1rwia_         125 AAGSKTQTV-LPFT------G-----LNDPDGVA-VDNS---GN-VYVTDTDNNRVVKLEAES-NNQVVLPFTDITAPWG  186 (260)
T ss_dssp             CTTCSSCEE-CCCC------S-----CCSCCEEE-ECTT---CC-EEEEEGGGTEEEEECTTT-CCEEECCCSSCCSEEE
T ss_pred             ccccceeee-eeec------c-----cCCcceee-ecCC---CC-Eeeecccccccccccccc-ceeeeeeccccCCCcc
Confidence            765543222 2110      1     11234555 8776   55 677777888999999875 3222222234456789


Q ss_pred             EEEeCCCCeEEEecCCCcEEEEecCCCeeeE-------eeeeeeecCCCceeceeec
Q 021291          258 LSIDESCNGGISGGADQKIVLYNLDHSTYVL-------FGIGFVCDQEGNKFGTTWH  307 (314)
Q Consensus       258 ~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~-------~~~~~~~~~~~~~~~~~w~  307 (314)
                      |+++++|.++++....+.|..++........       ...+++++++|.++.+.|.
T Consensus       187 i~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~  243 (260)
T d1rwia_         187 IAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRG  243 (260)
T ss_dssp             EEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGG
T ss_pred             ceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECC
Confidence            9999999988888888889888876553322       2456778889988887664

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.98  E-value=4.1e-07  Score=72.88  Aligned_cols=281  Identities=9%  Similarity=-0.012  Sum_probs=137.2

Q ss_pred             CCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCe--EEEee-cCCeEEEEeC
Q 021291           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNK--VISQG-RDGTVKCWDI   93 (314)
Q Consensus        17 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--l~s~~-~dg~v~iwd~   93 (314)
                      ....+.-|+|+|++++|+++.. +.+..|.+.....+.....+........+++++  +++.  ++++. ..++|..+.+
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~--~~~~~~v~~a~~~~~~v~~~~~  114 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADT--NTRAIFLLAAKQPPYAVYANPF  114 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS--CCEEEEEEECSSTTCCEEEEEE
T ss_pred             CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECC--CCCEEEEEEecCCCCEEEEeEc
Confidence            4455677999999999987765 467788765422222221111112245677788  7664  33332 2355555443


Q ss_pred             CCCC------------CCCCCeee--ee-cceeeEEEeeeeeccccccccCCCCcceeeccCCcee--e---ecCCCCCC
Q 021291           94 ENGG------------LSSNPSLT--IK-TNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETV--D---TDSLCDSK  153 (314)
Q Consensus        94 ~~~~------------~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~  153 (314)
                      ....            ....+...  .. ....+...+++.+...............+.+......  .   ........
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~g  194 (365)
T d1jofa_         115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDH  194 (365)
T ss_dssp             SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCC
T ss_pred             cCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCc
Confidence            2211            00000000  00 0112344444444333322222222333333322111  1   11111122


Q ss_pred             ---ceeccCCCceEEEeecCcCeEEEEecCCCceeeeeccc--c-cCCC----CCcCCCCCceeeeEEEecCCCCCCceE
Q 021291          154 ---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQN--S-CGGS----PNFSSKGRGMCMAVQAYLPSKSQGFVN  223 (314)
Q Consensus       154 ---~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~--~-~~~~----~~h~~~~~~~~~~~~~~~p~~~~g~~~  223 (314)
                         ++|+|+++.+++ +...+++|.+|++............  . ....    .............+. ++|+   |+ +
T Consensus       195 Pr~i~f~pdg~~~yv-~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~spd---G~-~  268 (365)
T d1jofa_         195 PRWVAMHPTGNYLYA-LMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCA-LTFS---GK-Y  268 (365)
T ss_dssp             EEEEEECTTSSEEEE-EETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEE-ECTT---SS-E
T ss_pred             eEEEEECCCCceEEE-eccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceE-ECCC---CC-E
Confidence               999999987765 5667899999998765432211100  0 0000    000001122345566 9998   66 5


Q ss_pred             EEEee-cC-----CcEEEEEccCCCCceEeee-----cCCcceEEEEEeC-CCCeEEEe-cCCCcEEEEecCCCeeeEee
Q 021291          224 VLAGY-ED-----GSILVWDIRNPGIPLTAMK-----VHLEPVLCLSIDE-SCNGGISG-GADQKIVLYNLDHSTYVLFG  290 (314)
Q Consensus       224 l~~g~-~d-----g~i~vwd~~~~~~~~~~~~-----~h~~~v~~~~~~~-~~~~l~s~-s~dg~i~iw~~~~~~~~~~~  290 (314)
                      |+++. .+     +.|..|++...+.......     ........++++| +|++|+.+ ..++.|.+|+++....... 
T Consensus       269 lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~l~~~-  347 (365)
T d1jofa_         269 MFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFLHRV-  347 (365)
T ss_dssp             EEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEEEEE-
T ss_pred             EEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCcCcEE-
Confidence            55443 22     2377788775333222111     1234567799997 78877555 5679999999876643222 


Q ss_pred             eeeeecCCCceeceeec
Q 021291          291 IGFVCDQEGNKFGTTWH  307 (314)
Q Consensus       291 ~~~~~~~~~~~~~~~w~  307 (314)
                      ........+......|.
T Consensus       348 ~~~~vp~p~~~~~~~w~  364 (365)
T d1jofa_         348 ARVRIPEPGFGMNAIWY  364 (365)
T ss_dssp             EEEECCSTTEEEEEEEE
T ss_pred             EEEECCCCCCCeEEEec
Confidence            22333233344455663

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.96  E-value=9.9e-09  Score=85.52  Aligned_cols=117  Identities=9%  Similarity=0.057  Sum_probs=82.6

Q ss_pred             eEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccC---CcccEEEEEEcccCCCCeEEEeec---------CCeEE
Q 021291           22 TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS---AAHGIVSVATGPSIGLNKVISQGR---------DGTVK   89 (314)
Q Consensus        22 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~l~s~~~---------dg~v~   89 (314)
                      ..+.|.++++++..  .|+.+.+||+.+++....+..+.   ....|.++.|+|  |+++|+.++.         ++.+.
T Consensus        20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~Sp--Dg~~i~~~~~~~~~~r~s~~~~~~   95 (470)
T d2bgra1          20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP--DGQFILLEYNYVKQWRHSYTASYD   95 (470)
T ss_dssp             CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECT--TSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             cCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECC--CCCEEEEEECCcceeeeccCceEE
Confidence            35789999987765  47789999999998876665432   113499999999  9999998753         56789


Q ss_pred             EEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeec
Q 021291           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE  169 (314)
Q Consensus        90 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  169 (314)
                      +||+.+++...  +... ..... .                                       ..|||||+.++.+   
T Consensus        96 l~d~~~~~~~~--l~~~-~~~~~-~---------------------------------------~~~SPDG~~ia~~---  129 (470)
T d2bgra1          96 IYDLNKRQLIT--EERI-PNNTQ-W---------------------------------------VTWSPVGHKLAYV---  129 (470)
T ss_dssp             EEETTTTEECC--SSCC-CTTEE-E---------------------------------------EEECSSTTCEEEE---
T ss_pred             EEECCCCcccc--cccC-Ccccc-c---------------------------------------cccccCcceeeEe---
Confidence            99999886432  1111 11111 0                                       4599999987653   


Q ss_pred             CcCeEEEEecCCCceeeee
Q 021291          170 QLSEVEIWDLNTAERCTRL  188 (314)
Q Consensus       170 ~d~~i~vwd~~~~~~~~~~  188 (314)
                      .++.+++|+..+++.....
T Consensus       130 ~~~~l~~~~~~~g~~~~~t  148 (470)
T d2bgra1         130 WNNDIYVKIEPNLPSYRIT  148 (470)
T ss_dssp             ETTEEEEESSTTSCCEECC
T ss_pred             ecccceEEECCCCceeeee
Confidence            2578999999988765543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.94  E-value=2.4e-06  Score=65.53  Aligned_cols=236  Identities=8%  Similarity=0.059  Sum_probs=131.4

Q ss_pred             ceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCC----cccEEEEEEcccCCCCeEEE-eecCCeEEEEeCC
Q 021291           20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA----AHGIVSVATGPSIGLNKVIS-QGRDGTVKCWDIE   94 (314)
Q Consensus        20 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~s-~~~dg~v~iwd~~   94 (314)
                      .-..++++++|+++++-..++.|++||.+ ++.+..+.....    ...-..+++.+. .+..+++ .+.++.|..++..
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~  101 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRN-SGDIIVTERSPTHQIQIYNQY  101 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETT-TTEEEEEECGGGCEEEEECTT
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCccccccccccccccc-ccccceeccCCcccccccccc
Confidence            46889999999988887788899999954 777776643211    112455666552 2334443 3445677777764


Q ss_pred             CCCCCCCCeeeeecce-eeEEEeeeeeccccccccCCCCcceeeccCCceeeec--CCCCCC----ceeccCCCceEEEe
Q 021291           95 NGGLSSNPSLTIKTNS-YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTD--SLCDSK----DDVPAEGPKYMAVA  167 (314)
Q Consensus        95 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~  167 (314)
                      .. ..    ..+.... .....+......... ........+..+.........  ...+..    +++.++++ +++ +
T Consensus       102 g~-~~----~~~~~~~~~~p~~~avd~~G~i~-v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~-i~v-~  173 (279)
T d1q7fa_         102 GQ-FV----RKFGATILQHPRGVTVDNKGRII-VVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQE-IFI-S  173 (279)
T ss_dssp             SC-EE----EEECTTTCSCEEEEEECTTSCEE-EEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSE-EEE-E
T ss_pred             cc-ce----eecCCCcccccceeccccCCcEE-EEeeccceeeEeccCCceeecccccccccccceeeecccee-EEe-e
Confidence            32 11    1111110 001111111111111 111122222223222222111  111211    67777774 443 4


Q ss_pred             ecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEee-cCCcEEEEEccCCCCceE
Q 021291          168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-EDGSILVWDIRNPGIPLT  246 (314)
Q Consensus       168 g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~-~dg~i~vwd~~~~~~~~~  246 (314)
                      ....+.|++||.. ++.+.++...      +.    ......++ +.|+   |+ ++++-. .++.|.+|+..  ++.+.
T Consensus       174 d~~~~~V~~~d~~-G~~~~~~g~~------g~----~~~P~gia-vD~~---G~-i~Vad~~~~~~v~~f~~~--G~~~~  235 (279)
T d1q7fa_         174 DNRAHCVKVFNYE-GQYLRQIGGE------GI----TNYPIGVG-INSN---GE-ILIADNHNNFNLTIFTQD--GQLIS  235 (279)
T ss_dssp             EGGGTEEEEEETT-CCEEEEESCT------TT----SCSEEEEE-ECTT---CC-EEEEECSSSCEEEEECTT--SCEEE
T ss_pred             eccccceeeeecC-Cceeeeeccc------cc----ccCCcccc-cccC---Ce-EEEEECCCCcEEEEECCC--CCEEE
Confidence            5557899999964 5666555311      11    22456676 8887   66 555543 45679999855  77777


Q ss_pred             eeecC--CcceEEEEEeCCCCeEEEecCCCcEEEEecCCC
Q 021291          247 AMKVH--LEPVLCLSIDESCNGGISGGADQKIVLYNLDHS  284 (314)
Q Consensus       247 ~~~~h--~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~  284 (314)
                      .+...  ......|+++++|+++++ +.++.|++|.....
T Consensus       236 ~~~~~~~~~~p~~vav~~dG~l~V~-~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         236 ALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  274 (279)
T ss_dssp             EEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             EEeCCCCCCCEeEEEEeCCCcEEEE-eCCCeEEEEEeeee
Confidence            76533  235789999999986554 57899999998765

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.86  E-value=3.2e-06  Score=66.18  Aligned_cols=233  Identities=9%  Similarity=0.004  Sum_probs=127.1

Q ss_pred             CCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeec----CCeEEEEeC
Q 021291           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR----DGTVKCWDI   93 (314)
Q Consensus        18 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~----dg~v~iwd~   93 (314)
                      ...+..++|.++|++.++-...+.|..|+.++++....+....  .....|++.+  +|+++++...    .+.+...+.
T Consensus        39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~--~~p~gla~~~--dG~l~va~~~~~~~~~~i~~~~~  114 (319)
T d2dg1a1          39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHK--ANPAAIKIHK--DGRLFVCYLGDFKSTGGIFAATE  114 (319)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSS--SSEEEEEECT--TSCEEEEECTTSSSCCEEEEECT
T ss_pred             CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCC--CCeeEEEECC--CCCEEEEecCCCccceeEEEEcC
Confidence            3445789999999988888889999999987766555554444  3478999999  9887776533    234555555


Q ss_pred             CCCCCCCCCeeeeec--ceeeEEEeeeeecccccccc-----CCCCcceeeccCCc-e---eeecCCCCCCceeccCCCc
Q 021291           94 ENGGLSSNPSLTIKT--NSYHFCKLSLVKEPYANAKQ-----ANEPKDCYEREVGE-T---VDTDSLCDSKDDVPAEGPK  162 (314)
Q Consensus        94 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~  162 (314)
                      .......  ......  .......+...+  ......     ......++.+.... .   +...+.....++|+|+++.
T Consensus       115 ~~~~~~~--~~~~~~~~~~~nd~~~d~~G--~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~  190 (319)
T d2dg1a1         115 NGDNLQD--IIEDLSTAYCIDDMVFDSKG--GFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKV  190 (319)
T ss_dssp             TSCSCEE--EECSSSSCCCEEEEEECTTS--CEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSE
T ss_pred             CCceeee--eccCCCcccCCcceeEEecc--ceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccce
Confidence            5443211  111000  011111111111  110000     00112233332211 1   1111111122899999987


Q ss_pred             eEEEeecCcCeEEEEecCCC-ceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCC
Q 021291          163 YMAVAGEQLSEVEIWDLNTA-ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP  241 (314)
Q Consensus       163 ~~~~~g~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~  241 (314)
                      +++ +-+..+.|..||+... ..........     .+........-.++ +.++   |+ +.++...++.|.+||..  
T Consensus       191 lyv-ad~~~~~I~~~d~~~~g~~~~~~~~~~-----~~~~~~~~~PdGl~-vD~~---G~-l~Va~~~~g~V~~~~p~--  257 (319)
T d2dg1a1         191 LWV-TETTANRLHRIALEDDGVTIQPFGATI-----PYYFTGHEGPDSCC-IDSD---DN-LYVAMYGQGRVLVFNKR--  257 (319)
T ss_dssp             EEE-EEGGGTEEEEEEECTTSSSEEEEEEEE-----EEECCSSSEEEEEE-EBTT---CC-EEEEEETTTEEEEECTT--
T ss_pred             EEE-ecccCCceEEEEEcCCCceecccccee-----eeccCCccceeeee-EcCC---CC-EEEEEcCCCEEEEECCC--
Confidence            765 4555789999997632 2111111000     00000112234455 7776   66 66777788999999964  


Q ss_pred             CCceEeee------cCCcceEEEEEeCCCCeEEEec
Q 021291          242 GIPLTAMK------VHLEPVLCLSIDESCNGGISGG  271 (314)
Q Consensus       242 ~~~~~~~~------~h~~~v~~~~~~~~~~~l~s~s  271 (314)
                      ++.+..+.      ++...+++++|.++...+++.+
T Consensus       258 G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         258 GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred             CcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEc
Confidence            77777765      2344678999988776665544

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.81  E-value=9.2e-07  Score=67.22  Aligned_cols=195  Identities=8%  Similarity=-0.002  Sum_probs=120.9

Q ss_pred             ceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCC
Q 021291           20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLS   99 (314)
Q Consensus        20 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~   99 (314)
                      ....++++++|+++++....+.+++++-.+...+......   ....++++.+  +++++++-..+..+..++.......
T Consensus        58 ~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~~---~~p~~iavd~--~g~i~v~d~~~~~~~~~~~~~~~~~  132 (260)
T d1rwia_          58 QPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGL---NYPEGLAVDT--QGAVYVADRGNNRVVKLAAGSKTQT  132 (260)
T ss_dssp             SCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSC---CSEEEEEECT--TCCEEEEEGGGTEEEEECTTCSSCE
T ss_pred             CceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeeeee---eecccccccc--cceeEeeccccccccccccccceee
Confidence            3568999999998888888888887776555554333222   3478999999  8787776666667777776554321


Q ss_pred             CCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEec
Q 021291          100 SNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDL  179 (314)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd~  179 (314)
                      .   .........                                       ..+++.++++ +++ +...++.|..+|.
T Consensus       133 ~---~~~~~~~~p---------------------------------------~~i~~~~~g~-~~v-~~~~~~~i~~~d~  168 (260)
T d1rwia_         133 V---LPFTGLNDP---------------------------------------DGVAVDNSGN-VYV-TDTDNNRVVKLEA  168 (260)
T ss_dssp             E---CCCCSCCSC---------------------------------------CEEEECTTCC-EEE-EEGGGTEEEEECT
T ss_pred             e---eeecccCCc---------------------------------------ceeeecCCCC-Eee-ecccccccccccc
Confidence            0   000000000                                       0056778876 444 3444688999997


Q ss_pred             CCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeee-cCCcceEEE
Q 021291          180 NTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK-VHLEPVLCL  258 (314)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~-~h~~~v~~~  258 (314)
                      ....... +..       .    .......++ +.++   |. ++++...++.|..++...  .....+. ..-.....|
T Consensus       169 ~~~~~~~-~~~-------~----~~~~p~gi~-~d~~---g~-l~vsd~~~~~i~~~~~~~--~~~~~~~~~~~~~P~~i  229 (260)
T d1rwia_         169 ESNNQVV-LPF-------T----DITAPWGIA-VDEA---GT-VYVTEHNTNQVVKLLAGS--TTSTVLPFTGLNTPLAV  229 (260)
T ss_dssp             TTCCEEE-CCC-------S----SCCSEEEEE-ECTT---CC-EEEEETTTTEEEEECTTC--SCCEECCCCSCCCEEEE
T ss_pred             ccceeee-eec-------c----ccCCCccce-eeee---ee-eeeeecCCCEEEEEeCCC--CeEEEEccCCCCCeEEE
Confidence            7544332 221       1    122456676 8886   55 777777788888888664  2222222 223456899


Q ss_pred             EEeCCCCeEEEecCCCcEEEEecC
Q 021291          259 SIDESCNGGISGGADQKIVLYNLD  282 (314)
Q Consensus       259 ~~~~~~~~l~s~s~dg~i~iw~~~  282 (314)
                      +++++|.++++-..++.|+.++..
T Consensus       230 ~~d~~g~l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         230 AVDSDRTVYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             EECTTCCEEEEEGGGTEEEEECCC
T ss_pred             EEeCCCCEEEEECCCCEEEEEeCC
Confidence            999999888877777777665543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.74  E-value=1.7e-06  Score=69.23  Aligned_cols=187  Identities=12%  Similarity=0.051  Sum_probs=98.9

Q ss_pred             ceeEEEEccCCCEEEEecC-CCeEEEEeCCC-CeE--EEEEeccCCcccEEEEEEcccCCCCeEEEee-cCCeEEEEeCC
Q 021291           20 SVTDVCFHQTKPILFAGTT-GGELRIWDTVQ-HRT--VSSSWVHSAAHGIVSVATGPSIGLNKVISQG-RDGTVKCWDIE   94 (314)
Q Consensus        20 ~v~~~~~~~~~~~l~s~~~-dg~v~iwd~~~-~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~v~iwd~~   94 (314)
                      .+.++.|+|||++|+++.. ...|.+|+... +..  ...............++|+|  ++++++... .+++|.+|++.
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~p--dg~~~yv~~e~~~~V~v~~~~  223 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP--TGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT--TSSEEEEEETTTTEEEEEEEC
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECC--CCceEEEeccCCCEEEEEEec
Confidence            4679999999998877653 45788887653 322  22222222224578999999  988876554 58899999998


Q ss_pred             CCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecC----
Q 021291           95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ----  170 (314)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----  170 (314)
                      .+....  .......+     +........  ....       .......       ..+.++|+|++++++....    
T Consensus       224 ~~~~~~--~~~~~~~~-----~~~~~~~~~--~~~~-------~~~~~~~-------~~i~~spdG~~lyvsnr~~~~~~  280 (365)
T d1jofa_         224 PATHMP--VYTHHSFP-----LIPPGIPDR--DPET-------GKGLYRA-------DVCALTFSGKYMFASSRANKFEL  280 (365)
T ss_dssp             TTTCCE--EEEEEEEE-----SSCTTCCCB--CTTT-------SSBSEEE-------EEEEECTTSSEEEEEEEESSTTS
T ss_pred             CCCceE--EEEeeeec-----ccccccccc--cccc-------ccccCCc-------cceEECCCCCEEEEEcccCCCcc
Confidence            765321  11111100     000000000  0000       0000000       0067899999877643322    


Q ss_pred             cCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccC
Q 021291          171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (314)
Q Consensus       171 d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~  240 (314)
                      ...|..|++.....+......      .+..........+. ++|.  +|+.+++++..++.|.+|+++.
T Consensus       281 ~~~i~~~~~~~~g~~~~~~~~------~~~~~~G~~p~~i~-~~p~--~G~~l~va~~~s~~v~v~~~~~  341 (365)
T d1jofa_         281 QGYIAGFKLRDCGSIEKQLFL------SPTPTSGGHSNAVS-PCPW--SDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             CCEEEEEEECTTSCEEEEEEE------EECSSCCTTCCCEE-ECTT--CTTEEEEECSSSCEEEEEEEET
T ss_pred             ceEEEEEEecCCCceeeEeEe------eEEEcCCCCccEEE-ecCC--CCCEEEEEeCCCCeEEEEEEeC
Confidence            123777776643322211100      00000112344455 8873  2664556667889999999874

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.71  E-value=1.2e-06  Score=68.05  Aligned_cols=207  Identities=7%  Similarity=-0.021  Sum_probs=120.3

Q ss_pred             eEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCe-EEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEE
Q 021291           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (314)
Q Consensus        11 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~   89 (314)
                      ...+......+.+++|+++|+++++...++.+.+|+..... ....+...........+++.+  +++++++-+.++.+.
T Consensus        60 ~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~--~g~~~v~~~~~~~i~  137 (302)
T d2p4oa1          60 QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS--DTQYLTADSYRGAIW  137 (302)
T ss_dssp             EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS--SSEEEEEETTTTEEE
T ss_pred             EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEcc--CCCEEeeccccccce
Confidence            44555567889999999999999988888888888765421 222222222224578999999  888888888888898


Q ss_pred             EEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCC-ceeccCCCceEEEee
Q 021291           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-DDVPAEGPKYMAVAG  168 (314)
Q Consensus        90 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g  168 (314)
                      .+|...+....    ..........            .                   ....... ..+..++..+++ +.
T Consensus       138 ~~~~~~~~~~~----~~~~~~~~~~------------~-------------------~~~~~~~~ngi~~~~~~l~~-~~  181 (302)
T d2p4oa1         138 LIDVVQPSGSI----WLEHPMLARS------------N-------------------SESVFPAANGLKRFGNFLYV-SN  181 (302)
T ss_dssp             EEETTTTEEEE----EEECGGGSCS------------S-------------------TTCCSCSEEEEEEETTEEEE-EE
T ss_pred             eeeccCCccee----EecCCcccee------------e-------------------ccCcccccccccccCCceee-ec
Confidence            88887653210    0000000000            0                   0000000 112334455554 45


Q ss_pred             cCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCc--eE
Q 021291          169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP--LT  246 (314)
Q Consensus       169 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~--~~  246 (314)
                      +..+.|..++.............      ..    ......++ +.++   |. +.++...++.|..++..  ++.  +.
T Consensus       182 ~~~~~i~~~~~~~~~~~~~~~~~------~~----~~~pdgia-~d~d---G~-l~va~~~~~~V~~i~p~--G~~~~~~  244 (302)
T d2p4oa1         182 TEKMLLLRIPVDSTDKPGEPEIF------VE----QTNIDDFA-FDVE---GN-LYGATHIYNSVVRIAPD--RSTTIIA  244 (302)
T ss_dssp             TTTTEEEEEEBCTTSCBCCCEEE------EE----SCCCSSEE-EBTT---CC-EEEECBTTCCEEEECTT--CCEEEEE
T ss_pred             CCCCeEEeccccccccccccccc------cC----CCCCcceE-ECCC---CC-EEEEEcCCCcEEEECCC--CCEEEEE
Confidence            56788988887654332211100      00    11233455 8887   65 67777778889998776  333  33


Q ss_pred             eeecCCcceEEEEE---eCCCCeEEEecC
Q 021291          247 AMKVHLEPVLCLSI---DESCNGGISGGA  272 (314)
Q Consensus       247 ~~~~h~~~v~~~~~---~~~~~~l~s~s~  272 (314)
                      .....-...++++|   ++|++.|..++.
T Consensus       245 ~~~~~~~~pt~vafg~~~~D~~~Lyvtt~  273 (302)
T d2p4oa1         245 QAEQGVIGSTAVAFGQTEGDCTAIYVVTN  273 (302)
T ss_dssp             CGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             ecCCCCCCceEEEEcCCCCCCCEEEEECC
Confidence            33334456899999   567776654443

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.61  E-value=4.4e-05  Score=57.67  Aligned_cols=197  Identities=11%  Similarity=0.067  Sum_probs=105.7

Q ss_pred             eEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCC---eEEEEeCCCCCCCCCCeeeeecceeeEEEee
Q 021291           41 ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG---TVKCWDIENGGLSSNPSLTIKTNSYHFCKLS  117 (314)
Q Consensus        41 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  117 (314)
                      .|.|.|.+.........+ .  ..+..-+|||  ||+.|+-.....   .+.+.+...+....  . . ........   
T Consensus        20 ~l~i~d~dG~~~~~l~~~-~--~~~~sP~wSP--DGk~IAf~~~~~~~~~~~~~~~~~~~~~~--~-~-~~~~~~~~---   87 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHRS-P--QPLMSPAWSP--DGSKLAYVTFESGRSALVIQTLANGAVRQ--V-A-SFPRHNGA---   87 (269)
T ss_dssp             EEEEEETTSCSCEEEEEE-S--SCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTTCCEEE--E-E-CCSSCEEE---
T ss_pred             EEEEEcCCCCCcEEEecC-C--CceeeeEECC--CCCEEEEEEeeccCcceeeeecccCceeE--E-e-eeeccccc---
Confidence            588888764444444333 3  4488999999  999998654432   35566665543211  0 1 11111111   


Q ss_pred             eeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEEEe--cCCCceeeeecccccCC
Q 021291          118 LVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWD--LNTAERCTRLHQNSCGG  195 (314)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vwd--~~~~~~~~~~~~~~~~~  195 (314)
                                                          ..|+|+|+.++..... ++...++.  ...........      
T Consensus        88 ------------------------------------~~~spdg~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~------  124 (269)
T d2hqsa1          88 ------------------------------------PAFSPDGSKLAFALSK-TGSLNLYVMDLASGQIRQVTD------  124 (269)
T ss_dssp             ------------------------------------EEECTTSSEEEEEECT-TSSCEEEEEETTTCCEEECCC------
T ss_pred             ------------------------------------ceecCCCCeeeEeeec-CCccceeecccccccceeeee------
Confidence                                                4589999887765433 33333332  22222222111      


Q ss_pred             CCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeEEEecCCC-
Q 021291          196 SPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQ-  274 (314)
Q Consensus       196 ~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg-  274 (314)
                             ......... ++++   +...+++...++...+|...........+..+........|+|+++.++..+.++ 
T Consensus       125 -------~~~~~~~~~-~~~~---~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~  193 (269)
T d2hqsa1         125 -------GRSNNTEPT-WFPD---SQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGG  193 (269)
T ss_dssp             -------CSSCEEEEE-ECTT---SSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSS
T ss_pred             -------ccccccccc-cccc---cccceecccccCCceEeeeecccccceeeecccccccccccccccceeEEEeecCC
Confidence                   112222233 6665   3335666666665555544332344455556667778889999999887776554 


Q ss_pred             c--EEEEecCCCeeeEe-----eeeeeecCCCceec
Q 021291          275 K--IVLYNLDHSTYVLF-----GIGFVCDQEGNKFG  303 (314)
Q Consensus       275 ~--i~iw~~~~~~~~~~-----~~~~~~~~~~~~~~  303 (314)
                      .  +.+.+...+.....     .....++|+|+.++
T Consensus       194 ~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~  229 (269)
T d2hqsa1         194 QQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVI  229 (269)
T ss_dssp             CEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEE
T ss_pred             ceeeeEeecccccceEeecCccccceEECCCCCEEE
Confidence            3  44455555443322     12235778887654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.54  E-value=3.2e-05  Score=59.09  Aligned_cols=162  Identities=12%  Similarity=0.103  Sum_probs=106.2

Q ss_pred             CCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCC
Q 021291           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG   96 (314)
Q Consensus        17 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~   96 (314)
                      .......+++.++|+++++....+.+.+++. +++.+..+....+......+++.+  +++.+++....+.|++||....
T Consensus       112 ~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~--~g~i~v~d~~~~~V~~~d~~G~  188 (279)
T d1q7fa_         112 ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVND--KQEIFISDNRAHCVKVFNYEGQ  188 (279)
T ss_dssp             TCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECS--SSEEEEEEGGGTEEEEEETTCC
T ss_pred             cccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeecc--ceeEEeeeccccceeeeecCCc
Confidence            3455678899999998888888888999984 467777765444445588999998  8888888888899999997643


Q ss_pred             CCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeEEE
Q 021291           97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI  176 (314)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v  176 (314)
                      .     +.++.....                                    +.....+++.++|+ ++++-...++.|.+
T Consensus       189 ~-----~~~~g~~g~------------------------------------~~~P~giavD~~G~-i~Vad~~~~~~v~~  226 (279)
T d1q7fa_         189 Y-----LRQIGGEGI------------------------------------TNYPIGVGINSNGE-ILIADNHNNFNLTI  226 (279)
T ss_dssp             E-----EEEESCTTT------------------------------------SCSEEEEEECTTCC-EEEEECSSSCEEEE
T ss_pred             e-----eeeeccccc------------------------------------ccCCcccccccCCe-EEEEECCCCcEEEE
Confidence            1     111110000                                    00000066889986 55433333467999


Q ss_pred             EecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccC
Q 021291          177 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (314)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~  240 (314)
                      |+. +++.+..+..        ..  .......++ +.|+   |.  |+++..++.|++|....
T Consensus       227 f~~-~G~~~~~~~~--------~~--~~~~p~~va-v~~d---G~--l~V~~~n~~v~~fr~~~  273 (279)
T d1q7fa_         227 FTQ-DGQLISALES--------KV--KHAQCFDVA-LMDD---GS--VVLASKDYRLYIYRYVQ  273 (279)
T ss_dssp             ECT-TSCEEEEEEE--------SS--CCSCEEEEE-EETT---TE--EEEEETTTEEEEEECSC
T ss_pred             ECC-CCCEEEEEeC--------CC--CCCCEeEEE-EeCC---Cc--EEEEeCCCeEEEEEeee
Confidence            984 5777766652        10  122466776 8887   54  44456789999999876

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=2.4e-05  Score=64.40  Aligned_cols=119  Identities=8%  Similarity=0.072  Sum_probs=74.5

Q ss_pred             EEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCC-cccEEEEEEcccCCCCeEEEee---------cCCeEEEEeC
Q 021291           24 VCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA-AHGIVSVATGPSIGLNKVISQG---------RDGTVKCWDI   93 (314)
Q Consensus        24 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~~---------~dg~v~iwd~   93 (314)
                      ..|.+++.++.. ..+|.|.+||+.+++....+....- ...+....|+|  |+++++...         ..+.+.++|+
T Consensus        22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Sp--D~~~vl~~~~~~~~~r~s~~~~~~i~d~   98 (465)
T d1xfda1          22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISP--DREYALFSYNVEPIYQHSYTGYYVLSKI   98 (465)
T ss_dssp             CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECT--TSSEEEEEESCCCCSSSCCCSEEEEEES
T ss_pred             CEEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECC--CCCeEEEEEcccceeEeeccccEEEEEc
Confidence            468888876654 5678899999998876544443321 12467888999  999877653         3567888898


Q ss_pred             CCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCe
Q 021291           94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSE  173 (314)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~  173 (314)
                      .++....  +.........   +.                                   ...|||+|+.++.+.   ++.
T Consensus        99 ~~~~~~~--l~~~~~~~~~---l~-----------------------------------~~~wSPDG~~iafv~---~~n  135 (465)
T d1xfda1          99 PHGDPQS--LDPPEVSNAK---LQ-----------------------------------YAGWGPKGQQLIFIF---ENN  135 (465)
T ss_dssp             SSCCCEE--CCCTTCCSCC---CS-----------------------------------BCCBCSSTTCEEEEE---TTE
T ss_pred             cCCceee--ccCccCCccc---cc-----------------------------------eeeeccCCceEEEEe---cce
Confidence            8775321  1000000000   00                                   045999999876643   477


Q ss_pred             EEEEecCCCceeeee
Q 021291          174 VEIWDLNTAERCTRL  188 (314)
Q Consensus       174 i~vwd~~~~~~~~~~  188 (314)
                      |.+.+..++..++..
T Consensus       136 l~~~~~~~~~~~~lt  150 (465)
T d1xfda1         136 IYYCAHVGKQAIRVV  150 (465)
T ss_dssp             EEEESSSSSCCEEEE
T ss_pred             EEEEecCCCceEEEe
Confidence            999988776654433

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.36  E-value=0.00024  Score=54.50  Aligned_cols=223  Identities=11%  Similarity=0.079  Sum_probs=123.0

Q ss_pred             eEEEEcc-CCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCC
Q 021291           22 TDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSS  100 (314)
Q Consensus        22 ~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~  100 (314)
                      -+..|++ ++.++.+=-..+.|.-||.++++.. .+...   ..+.++++.+  ++.++++ +.+ -|.++|..+++...
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~~~---~~~~~i~~~~--dg~l~va-~~~-gl~~~d~~tg~~~~   92 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHALP---FMGSALAKIS--DSKQLIA-SDD-GLFLRDTATGVLTL   92 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECS---SCEEEEEEEE--TTEEEEE-ETT-EEEEEETTTCCEEE
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEECC---CCcEEEEEec--CCCEEEE-EeC-ccEEeecccceeeE
Confidence            4567887 5556666567789999999887653 33322   3488999988  8666654 444 58899999886421


Q ss_pred             CCeeeeecc----eeeEEEeeeeecccccc---ccCCCCcceeeccCCceee--ecCCCCCCceeccCCCceEEEeecCc
Q 021291          101 NPSLTIKTN----SYHFCKLSLVKEPYANA---KQANEPKDCYEREVGETVD--TDSLCDSKDDVPAEGPKYMAVAGEQL  171 (314)
Q Consensus       101 ~~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~d  171 (314)
                        .......    ......+...+......   ........++.+..+....  ..+.....++|+++++.+++ +.+..
T Consensus        93 --l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~-~dt~~  169 (295)
T d2ghsa1          93 --HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYF-VDTKV  169 (295)
T ss_dssp             --EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEE-EETTT
T ss_pred             --EeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEE-eeccc
Confidence              1111111    11111111111100000   0111223344444432211  11111122889999987765 45557


Q ss_pred             CeEEEEecCCCce-----eeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceE
Q 021291          172 SEVEIWDLNTAER-----CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (314)
Q Consensus       172 ~~i~vwd~~~~~~-----~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~  246 (314)
                      +.|..|++.....     ...+.         ......+..-.++ +..+   |. +.++....+.|..||..  ++.+.
T Consensus       170 ~~I~~~~~d~~~~~~~~~~~~~~---------~~~~~~g~pdG~~-vD~~---Gn-lWva~~~~g~V~~~dp~--G~~~~  233 (295)
T d2ghsa1         170 NRLMRVPLDARTGLPTGKAEVFI---------DSTGIKGGMDGSV-CDAE---GH-IWNARWGEGAVDRYDTD--GNHIA  233 (295)
T ss_dssp             CEEEEEEBCTTTCCBSSCCEEEE---------ECTTSSSEEEEEE-ECTT---SC-EEEEEETTTEEEEECTT--CCEEE
T ss_pred             ceeeEeeecccccccccceEEEe---------ccCcccccccceE-EcCC---CC-EEeeeeCCCceEEecCC--CcEee
Confidence            8899888742211     11111         0011233455555 7665   65 55665567889999965  78888


Q ss_pred             eeecCCcceEEEEEe-CCCCeE-EEec
Q 021291          247 AMKVHLEPVLCLSID-ESCNGG-ISGG  271 (314)
Q Consensus       247 ~~~~h~~~v~~~~~~-~~~~~l-~s~s  271 (314)
                      .+.--...+++++|- ++...| +|.+
T Consensus       234 ~i~lP~~~~T~~~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         234 RYEVPGKQTTCPAFIGPDASRLLVTSA  260 (295)
T ss_dssp             EEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             EecCCCCceEEEEEeCCCCCEEEEEEC
Confidence            887666789999994 555444 5443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.25  E-value=0.00041  Score=52.33  Aligned_cols=68  Identities=13%  Similarity=0.005  Sum_probs=47.4

Q ss_pred             EEccC--CCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeec-CC-----eEEEEeCCCC
Q 021291           25 CFHQT--KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-DG-----TVKCWDIENG   96 (314)
Q Consensus        25 ~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg-----~v~iwd~~~~   96 (314)
                      ..+||  |+.++-.+ +|.|.+.|+.+++.. .+..+.  ..+...+|+|  ||+.|+-... ++     .|.+++..++
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~--~~~~~p~~SP--DG~~iaf~~~~~~~~~~~~i~~~~~~~g   78 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNL--GVINNARFFP--DGRKIAIRVMRGSSLNTADLYFYNGENG   78 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSS--SEEEEEEECT--TSSEEEEEEEESTTCCEEEEEEEETTTT
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCC--CcccCEEECC--CCCEEEEEEeeCCCCCceEEEEEEecCC
Confidence            45788  98887654 457889999887765 444444  4488999999  9999885432 22     4777777776


Q ss_pred             CC
Q 021291           97 GL   98 (314)
Q Consensus        97 ~~   98 (314)
                      +.
T Consensus        79 ~~   80 (281)
T d1k32a2          79 EI   80 (281)
T ss_dssp             EE
T ss_pred             ce
Confidence            53

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=6.3e-05  Score=61.85  Aligned_cols=76  Identities=7%  Similarity=-0.071  Sum_probs=54.7

Q ss_pred             ceeEEEEccCCCEEEEe---------cCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEE
Q 021291           20 SVTDVCFHQTKPILFAG---------TTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC   90 (314)
Q Consensus        20 ~v~~~~~~~~~~~l~s~---------~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~i   90 (314)
                      .+....||||+++++..         +..+.+.++|+.++..............+....|+|  ||+.++-.. ++.|.+
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSP--DG~~iafv~-~~nl~~  138 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGP--KGQQLIFIF-ENNIYY  138 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCS--STTCEEEEE-TTEEEE
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeecc--CCceEEEEe-cceEEE
Confidence            56778899999987765         446789999999876543322222223466789999  999988765 568888


Q ss_pred             EeCCCCCC
Q 021291           91 WDIENGGL   98 (314)
Q Consensus        91 wd~~~~~~   98 (314)
                      .+..++..
T Consensus       139 ~~~~~~~~  146 (465)
T d1xfda1         139 CAHVGKQA  146 (465)
T ss_dssp             ESSSSSCC
T ss_pred             EecCCCce
Confidence            88876643

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.19  E-value=0.00038  Score=53.85  Aligned_cols=199  Identities=10%  Similarity=0.037  Sum_probs=104.9

Q ss_pred             eeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEecc-CC--cccEEEEEEcccCCCCeEEEeec-------------
Q 021291           21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVH-SA--AHGIVSVATGPSIGLNKVISQGR-------------   84 (314)
Q Consensus        21 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~--~~~v~~~~~~~~~~~~~l~s~~~-------------   84 (314)
                      -..++|.++++.|+++...+.|...+.+..... .+... ..  ......+++.+  +|++.++-..             
T Consensus        73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~-~~~~~~~g~~~~~pndl~~d~--~G~lyvtd~~~~~~~~~~~~~~~  149 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEE-IAKKDSEGRRMQGCNDCAFDY--EGNLWITAPAGEVAPADYTRSMQ  149 (314)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEETTSCEEE-CCSBCTTSCBCBCCCEEEECT--TSCEEEEECBCBCTTSCCCBTTS
T ss_pred             ceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEE-EEeccccccccCCCcEEEECC--CCCEEEecCccCcccccccceec
Confidence            346999999988887777777889997654332 22211 11  01256789999  8887776322             


Q ss_pred             --CCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccc--cccccCCCCcce--eeccCCcee-----eecCCCCC-
Q 021291           85 --DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY--ANAKQANEPKDC--YEREVGETV-----DTDSLCDS-  152 (314)
Q Consensus        85 --dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~-----~~~~~~~~-  152 (314)
                        +|.|..++... +..   .............+++.....  ...........+  +++.....+     ...+.... 
T Consensus       150 ~~~G~v~~~~~dg-~~~---~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~  225 (314)
T d1pjxa_         150 EKFGSIYCFTTDG-QMI---QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE  225 (314)
T ss_dssp             SSCEEEEEECTTS-CEE---EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS
T ss_pred             cCCceEEEEeecC-cee---EeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcccccc
Confidence              23344444322 111   000001111122233222111  111222222233  333322211     11222211 


Q ss_pred             ---C-ceeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEee
Q 021291          153 ---K-DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY  228 (314)
Q Consensus       153 ---~-~~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~  228 (314)
                         + +++..+|+ ++++ ....+.|.+||...++....+..        .    .....+++ |.|+   ++.++++.+
T Consensus       226 ~~pdGiavD~~Gn-lyVa-~~~~g~I~~~dp~~g~~~~~i~~--------p----~~~~t~~a-fg~d---~~~lyVt~~  287 (314)
T d1pjxa_         226 GGADGMDFDEDNN-LLVA-NWGSSHIEVFGPDGGQPKMRIRC--------P----FEKPSNLH-FKPQ---TKTIFVTEH  287 (314)
T ss_dssp             CEEEEEEEBTTCC-EEEE-EETTTEEEEECTTCBSCSEEEEC--------S----SSCEEEEE-ECTT---SSEEEEEET
T ss_pred             ccceeeEEecCCc-EEEE-EcCCCEEEEEeCCCCEEEEEEEC--------C----CCCEEEEE-EeCC---CCEEEEEEC
Confidence               1 88889986 4443 33358899999988876665552        1    22456676 9887   543677778


Q ss_pred             cCCcEEEEEccCCCCc
Q 021291          229 EDGSILVWDIRNPGIP  244 (314)
Q Consensus       229 ~dg~i~vwd~~~~~~~  244 (314)
                      .+|.|..+++..+++.
T Consensus       288 ~~g~i~~~~~~~~G~~  303 (314)
T d1pjxa_         288 ENNAVWKFEWQRNGKK  303 (314)
T ss_dssp             TTTEEEEEECSSCBCC
T ss_pred             CCCcEEEEECCCCChh
Confidence            8899999898765643

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.05  E-value=0.0014  Score=50.75  Aligned_cols=182  Identities=7%  Similarity=-0.004  Sum_probs=102.8

Q ss_pred             EEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCcee
Q 021291           65 IVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETV  144 (314)
Q Consensus        65 v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (314)
                      +..++|.+  +|++.++-...+.|..||..++....   ...........                              
T Consensus        42 lEG~~~D~--~G~Ly~~D~~~g~I~ri~p~g~~~~~---~~~~~~~~p~g------------------------------   86 (319)
T d2dg1a1          42 LEGLNFDR--QGQLFLLDVFEGNIFKINPETKEIKR---PFVSHKANPAA------------------------------   86 (319)
T ss_dssp             EEEEEECT--TSCEEEEETTTCEEEEECTTTCCEEE---EEECSSSSEEE------------------------------
T ss_pred             cEeCEECC--CCCEEEEECCCCEEEEEECCCCeEEE---EEeCCCCCeeE------------------------------
Confidence            67899998  88877777778899999887754211   00011000000                              


Q ss_pred             eecCCCCCCceeccCCCceEEEeecC--cCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCce
Q 021291          145 DTDSLCDSKDDVPAEGPKYMAVAGEQ--LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFV  222 (314)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~g~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~  222 (314)
                               ++++++|..+++..+..  .+.+...+...........         +.. .......+. +.|+   |+ 
T Consensus        87 ---------la~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~---------~~~-~~~~~nd~~-~d~~---G~-  142 (319)
T d2dg1a1          87 ---------IKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIE---------DLS-TAYCIDDMV-FDSK---GG-  142 (319)
T ss_dssp             ---------EEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEEC---------SSS-SCCCEEEEE-ECTT---SC-
T ss_pred             ---------EEECCCCCEEEEecCCCccceeEEEEcCCCceeeeecc---------CCC-cccCCccee-EEec---cc-
Confidence                     56888886444322221  2345555655544433332         111 122345565 8887   65 


Q ss_pred             EEEEeec------CCcEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeE-EEecCCCcEEEEecCCCeeeE-------
Q 021291          223 NVLAGYE------DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGG-ISGGADQKIVLYNLDHSTYVL-------  288 (314)
Q Consensus       223 ~l~~g~~------dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~s~dg~i~iw~~~~~~~~~-------  288 (314)
                      +.++...      .+.+..++..  +..+..+...-...+.++|+++++.| ++-+..+.|..|+++......       
T Consensus       143 l~vtd~~~~~~~~~g~v~~~~~d--g~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~  220 (319)
T d2dg1a1         143 FYFTDFRGYSTNPLGGVYYVSPD--FRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATI  220 (319)
T ss_dssp             EEEEECCCBTTBCCEEEEEECTT--SCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEE
T ss_pred             eeecccccccccCcceeEEEecc--cceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceecccccee
Confidence            4444322      1235555544  34444443334456889999999855 666778899999986432111       


Q ss_pred             --------eeeeeeecCCCceeceeec
Q 021291          289 --------FGIGFVCDQEGNKFGTTWH  307 (314)
Q Consensus       289 --------~~~~~~~~~~~~~~~~~w~  307 (314)
                              ..-+++++.+|.++.+.|.
T Consensus       221 ~~~~~~~~~PdGl~vD~~G~l~Va~~~  247 (319)
T d2dg1a1         221 PYYFTGHEGPDSCCIDSDDNLYVAMYG  247 (319)
T ss_dssp             EEECCSSSEEEEEEEBTTCCEEEEEET
T ss_pred             eeccCCccceeeeeEcCCCCEEEEEcC
Confidence                    0235778888888777664

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.78  E-value=0.0024  Score=50.50  Aligned_cols=25  Identities=20%  Similarity=0.306  Sum_probs=21.7

Q ss_pred             EEEecCCCeEEEEeCCCCeEEEEEe
Q 021291           33 LFAGTTGGELRIWDTVQHRTVSSSW   57 (314)
Q Consensus        33 l~s~~~dg~v~iwd~~~~~~~~~~~   57 (314)
                      +.||+..|.|+|+-+.+++.+..+.
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ip   40 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVP   40 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEE
T ss_pred             EeeCCccceEEEEecCCcceEEEee
Confidence            5789999999999999998887764

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.61  E-value=0.0096  Score=47.02  Aligned_cols=71  Identities=20%  Similarity=0.123  Sum_probs=48.9

Q ss_pred             eEEEecCCCCCCceEEEEeecCCcEEEEEccCC-------CCceEeee---cCCcceEEEEEeCCCCeEEEecCCCcEEE
Q 021291          209 AVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP-------GIPLTAMK---VHLEPVLCLSIDESCNGGISGGADQKIVL  278 (314)
Q Consensus       209 ~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~-------~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~s~dg~i~i  278 (314)
                      .+. .+||   |++++++|..+.++.|+|++..       ..+...+.   ...-.-..-+|+.+|.-..|---|..|.-
T Consensus       279 GV~-vSPD---GKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g~aytslfids~v~k  354 (459)
T d1fwxa2         279 GCN-MAPD---KKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVK  354 (459)
T ss_dssp             CEE-ECTT---SSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEE
T ss_pred             ceE-ECCC---CCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCCCceEEEEeeccceEEE
Confidence            444 8888   7768888899999999999631       11111111   12234566789999976667678999999


Q ss_pred             EecCC
Q 021291          279 YNLDH  283 (314)
Q Consensus       279 w~~~~  283 (314)
                      |+++.
T Consensus       355 w~~~~  359 (459)
T d1fwxa2         355 WNIED  359 (459)
T ss_dssp             EEHHH
T ss_pred             Eecch
Confidence            99853

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.50  E-value=0.0097  Score=44.33  Aligned_cols=76  Identities=8%  Similarity=0.043  Sum_probs=50.3

Q ss_pred             CCCCceEEecCCCCceeEEEEccCCCEEEEec----CC--CeEEEEeCCCCeEEEEEecc----CCcccEEEEEEcccCC
Q 021291            6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGT----TG--GELRIWDTVQHRTVSSSWVH----SAAHGIVSVATGPSIG   75 (314)
Q Consensus         6 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~s~~----~d--g~v~iwd~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~   75 (314)
                      ..+...+.|..+.+.+...+|||||+.||-..    .+  ..|.+++..+++........    ..........|+|  +
T Consensus        28 ~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~sp--d  105 (281)
T d1k32a2          28 LKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDP--D  105 (281)
T ss_dssp             TTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECT--T
T ss_pred             CCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCC--C
Confidence            34455567777888899999999999888542    22  24778888877665432111    0012356788999  9


Q ss_pred             CCeEEEee
Q 021291           76 LNKVISQG   83 (314)
Q Consensus        76 ~~~l~s~~   83 (314)
                      ++.|+...
T Consensus       106 g~~l~~~~  113 (281)
T d1k32a2         106 GNLIISTD  113 (281)
T ss_dssp             CCEEEEEC
T ss_pred             CCEEEEEE
Confidence            88887643

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.31  E-value=0.031  Score=46.92  Aligned_cols=69  Identities=14%  Similarity=0.180  Sum_probs=44.9

Q ss_pred             CEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeec------CCeEEEEeCCCCCCCC
Q 021291           31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR------DGTVKCWDIENGGLSS  100 (314)
Q Consensus        31 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~------dg~v~iwd~~~~~~~~  100 (314)
                      .+++.++.|+.|.-.|.++|+.+..+....... -..+.-.|.--++.++.+..      .|.|+-+|.++++++.
T Consensus       122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~-~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W  196 (596)
T d1w6sa_         122 ALILKTQLDGNVAALNAETGETVWKVENSDIKV-GSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVW  196 (596)
T ss_dssp             CEEEEECTTSEEEEEETTTCCEEEEEECCCGGG-TCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEE
T ss_pred             eEEEEEeCCCCeEeeccccCceecccccccccc-ccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEE
Confidence            468889999999999999999998875321100 01111111112245555543      4899999999998755

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.26  E-value=0.039  Score=46.04  Aligned_cols=67  Identities=15%  Similarity=0.158  Sum_probs=42.5

Q ss_pred             CEEEEecCCCeEEEEeCCCCeEEEEEeccCCc--ccEEEEEEcccCCCCeEEEee------cCCeEEEEeCCCCCCCC
Q 021291           31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAA--HGIVSVATGPSIGLNKVISQG------RDGTVKCWDIENGGLSS  100 (314)
Q Consensus        31 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~l~s~~------~dg~v~iwd~~~~~~~~  100 (314)
                      ..++.++.||.+.-.|.++|+.+.........  ..++.--...  + ..++.+.      .+|.|.-+|+++++.+.
T Consensus       116 ~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~--~-~~vivg~~~~~~~~~G~v~a~D~~TG~~~W  190 (571)
T d2ad6a1         116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA--K-DTVLMGCSGAELGVRGAVNAFDLKTGELKW  190 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--T-TEEEEECBCGGGTCCCEEEEEETTTCCEEE
T ss_pred             CeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEe--C-CeEEEeeccccccccCcEEEEECCCCcEEE
Confidence            46777889999999999999988776532210  1111111111  3 3444443      36889999999998754

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.84  E-value=0.099  Score=43.41  Aligned_cols=80  Identities=11%  Similarity=0.116  Sum_probs=49.8

Q ss_pred             cCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeec
Q 021291          171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV  250 (314)
Q Consensus       171 d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~  250 (314)
                      .|.|.-||+.+++.+-+++..         ....+..++   -.     |. ++++|+.||.++.+|.++ ++.+-+++-
T Consensus       437 ~G~l~A~D~~tGk~~W~~~~~---------~~~~gg~l~---Ta-----gg-lVF~G~~dg~l~A~Da~t-Ge~LW~~~l  497 (560)
T d1kv9a2         437 SGALLAWDPVKQKAAWKVPYP---------THWNGGTLS---TA-----GN-LVFQGTAAGQMHAYSADK-GEALWQFEA  497 (560)
T ss_dssp             EEEEEEEETTTTEEEEEEEES---------SSCCCCEEE---ET-----TT-EEEEECTTSEEEEEETTT-CCEEEEEEC
T ss_pred             ccceEEEeCCCCeEeeeccCC---------CCCCCceeE---EC-----CC-EEEEECCCCcEEEEECCC-CcEeEEEEC
Confidence            367888999999988776631         111222221   11     33 778899999999999999 888877763


Q ss_pred             CCc-ceEEEEEeCCCC-eEEE
Q 021291          251 HLE-PVLCLSIDESCN-GGIS  269 (314)
Q Consensus       251 h~~-~v~~~~~~~~~~-~l~s  269 (314)
                      ... .-.-+.+..+|+ ||+.
T Consensus       498 ~~~~~~~P~ty~~dGkqyv~v  518 (560)
T d1kv9a2         498 QSGIVAAPMTFELAGRQYVAI  518 (560)
T ss_dssp             SSCCCSCCEEEEETTEEEEEE
T ss_pred             CCCccccCEEEEECCEEEEEE
Confidence            221 111245555664 4443

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.75  E-value=0.11  Score=43.00  Aligned_cols=70  Identities=24%  Similarity=0.323  Sum_probs=43.3

Q ss_pred             CCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeec------CCeEEEEeCCCCCCCC
Q 021291           30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR------DGTVKCWDIENGGLSS  100 (314)
Q Consensus        30 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~------dg~v~iwd~~~~~~~~  100 (314)
                      +..++.+..|+.|.-.|..+|+.+.......... -..+.-.|......++.+..      .|.|.-+|.++++.+.
T Consensus       117 ~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~-~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W  192 (560)
T d1kv9a2         117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAK-PYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAW  192 (560)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTS-SCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred             CCeEEEEeCCCEEEEEECCCCcEEeccCccCccc-ceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEe
Confidence            3467888999999999999999988776432211 11111111001234444332      3679999999998755

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.59  E-value=0.15  Score=42.35  Aligned_cols=69  Identities=20%  Similarity=0.303  Sum_probs=41.9

Q ss_pred             EEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeec------CCeEEEEeCCCCCCCC
Q 021291           32 ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR------DGTVKCWDIENGGLSS  100 (314)
Q Consensus        32 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~------dg~v~iwd~~~~~~~~  100 (314)
                      .++.++.|+.+.-.|.++|+.+...........-..+.-.|.--...++.++.      .|.|.-+|.++++.+.
T Consensus       130 ~v~~~t~~g~l~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W  204 (573)
T d1kb0a2         130 KVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKW  204 (573)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred             cEEEEecccceeeeccccccceecccCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCcccee
Confidence            56778889999999999999987765432111101111111001244555432      4689999999998754

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.58  E-value=0.09  Score=39.59  Aligned_cols=136  Identities=15%  Similarity=0.131  Sum_probs=78.8

Q ss_pred             eeccCCCceEEEeecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeec---CC
Q 021291          155 DVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE---DG  231 (314)
Q Consensus       155 ~~~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~---dg  231 (314)
                      ++.++|. +++ +. . ..+.++|..+++.......        ........+..+. +.|+   |+.++.+...   .+
T Consensus        65 ~~~~dg~-l~v-a~-~-~gl~~~d~~tg~~~~l~~~--------~~~~~~~~~nd~~-vd~~---G~iw~~~~~~~~~~~  128 (295)
T d2ghsa1          65 AKISDSK-QLI-AS-D-DGLFLRDTATGVLTLHAEL--------ESDLPGNRSNDGR-MHPS---GALWIGTMGRKAETG  128 (295)
T ss_dssp             EEEETTE-EEE-EE-T-TEEEEEETTTCCEEEEECS--------STTCTTEEEEEEE-ECTT---SCEEEEEEETTCCTT
T ss_pred             EEecCCC-EEE-EE-e-CccEEeecccceeeEEeee--------ecCCCcccceeeE-ECCC---CCEEEEecccccccc
Confidence            3556664 443 23 2 4599999998875433321        1111223466666 8877   6634433322   23


Q ss_pred             cEEEEEccCCCCceEeeecCCcceEEEEEeCCCCeE-EEecCCCcEEEEecCCCe-------eeE--------eeeeeee
Q 021291          232 SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGG-ISGGADQKIVLYNLDHST-------YVL--------FGIGFVC  295 (314)
Q Consensus       232 ~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~s~dg~i~iw~~~~~~-------~~~--------~~~~~~~  295 (314)
                      .-.+|.+.. ++....... -..-+.++|+++++.+ ++-+..+.|..++++...       .++        ..-++++
T Consensus       129 ~g~l~~~~~-g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~v  206 (295)
T d2ghsa1         129 AGSIYHVAK-GKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVC  206 (295)
T ss_dssp             CEEEEEEET-TEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEE
T ss_pred             ceeEeeecC-CcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEE
Confidence            455666665 544443333 3456789999998754 666678889998875321       111        1345678


Q ss_pred             cCCCceeceeecc
Q 021291          296 DQEGNKFGTTWHI  308 (314)
Q Consensus       296 ~~~~~~~~~~w~~  308 (314)
                      +.+|.+....|.-
T Consensus       207 D~~GnlWva~~~~  219 (295)
T d2ghsa1         207 DAEGHIWNARWGE  219 (295)
T ss_dssp             CTTSCEEEEEETT
T ss_pred             cCCCCEEeeeeCC
Confidence            8888888777653

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.37  E-value=0.12  Score=38.58  Aligned_cols=236  Identities=13%  Similarity=0.122  Sum_probs=125.6

Q ss_pred             EEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCCCC
Q 021291           23 DVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNP  102 (314)
Q Consensus        23 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  102 (314)
                      +.-.+|..+.||.=+ ..++.|||+++.+.++.+...+   .|.--.|-.  + +.|+-.. +..|.-|+++...   .|
T Consensus        67 sAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e---~VvfWkWis--~-~~L~lVT-~taVYHW~~~g~s---~P  135 (327)
T d1utca2          67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWKWIS--L-NTVALVT-DNAVYHWSMEGES---QP  135 (327)
T ss_dssp             EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS---CCCEEEESS--S-SEEEEEC-SSEEEEEESSSSC---CC
T ss_pred             hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC---CcEEEEecC--C-CEEEEEc-CCceEEEcccCCC---Cc
Confidence            355678777777655 4589999999999998887664   476777765  4 6666555 3489999996533   22


Q ss_pred             eeeee--cceeeEEEee--ee--ecccccc---cc---CCCCcceeeccCCceeeecCCCCCC--ceeccCCC----ceE
Q 021291          103 SLTIK--TNSYHFCKLS--LV--KEPYANA---KQ---ANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGP----KYM  164 (314)
Q Consensus       103 ~~~~~--~~~~~~~~~~--~~--~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----~~~  164 (314)
                      ..-+.  ..-.....++  ..  .......   ..   ..+.+..+..  .+.....+++|..  ..+-.+|+    .++
T Consensus       136 ~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~--er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf  213 (327)
T d1utca2         136 VKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSV--DRKVSQPIEGHAASFAQFKMEGNAEESTLF  213 (327)
T ss_dssp             EEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEET--TTTEEEEECCSEEEEEEECCTTCSSCEEEE
T ss_pred             hhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEe--ccCcCccccceeeeeEEEEcCCCCCCceEE
Confidence            22222  1111111111  11  0000000   00   1122222222  2334444556655  33322222    233


Q ss_pred             EEe--ecCcCeEEEEecCCCce-eeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCC
Q 021291          165 AVA--GEQLSEVEIWDLNTAER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP  241 (314)
Q Consensus       165 ~~~--g~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~  241 (314)
                      +.+  +...+++.+-++..... -..+.... ....--++.......++. .++..  |  .+..-+.-|.|++||+.+ 
T Consensus       214 ~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~-vdi~fppea~~DFPvamq-vs~ky--g--iiyviTK~G~i~lyDleT-  286 (327)
T d1utca2         214 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKA-VDVFFPPEAQNDFPVAMQ-ISEKH--D--VVFLITKYGYIHLYDLET-  286 (327)
T ss_dssp             EEEEEETTEEEEEEEECSCCCTTCCCCCCEE-EECCCCTTCTTCCEEEEE-EETTT--T--EEEEEETTSEEEEEETTT-
T ss_pred             EEEECCCCCcEEEEEEcCCCccCCCCCccee-EEEECCccccCCcEEEEE-eeccC--C--EEEEEecCcEEEEEEccc-
Confidence            322  23336788887754211 11110000 000011122345666776 77652  3  677778899999999999 


Q ss_pred             CCceEeeecCCcceEEEEEeCCCCeEEEecCCCcEEE
Q 021291          242 GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVL  278 (314)
Q Consensus       242 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~i  278 (314)
                      +.++..-+-..++|..-+-+.+..-++....+|.|.-
T Consensus       287 gt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl~  323 (327)
T d1utca2         287 GTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLS  323 (327)
T ss_dssp             CCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred             ccEEEEeecCCCceEEeccCCCCceEEEECCCCeEEE
Confidence            8888777766777776665555445566667776654

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.34  E-value=0.22  Score=41.41  Aligned_cols=78  Identities=12%  Similarity=0.063  Sum_probs=49.9

Q ss_pred             CeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecC
Q 021291          172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH  251 (314)
Q Consensus       172 ~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h  251 (314)
                      |.|.-+|+.+++.+-+++.       ++  +..+...     +..   |. ++++|+.||.++.+|.++ ++.+-+++-.
T Consensus       466 G~l~AiD~~TG~i~W~~~~-------~~--p~~~g~l-----sta---gg-lVF~Gt~dg~l~A~Da~T-Ge~LW~~~~~  526 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKE-------HL--PLWAGVL-----ATA---GN-LVFTGTGDGYFKAFDAKS-GKELWKFQTG  526 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEE-------SS--CCCSCCE-----EET---TT-EEEEECTTSEEEEEETTT-CCEEEEEECS
T ss_pred             CeEEEEcCCCCcEEeecCC-------CC--CCcccee-----EEc---CC-eEEEeCCCCeEEEEECCC-CcEeEEEECC
Confidence            6788899999988877663       11  1122222     212   44 777899999999999999 8888777632


Q ss_pred             Cc-ceEEEEEeCCCC-eEE
Q 021291          252 LE-PVLCLSIDESCN-GGI  268 (314)
Q Consensus       252 ~~-~v~~~~~~~~~~-~l~  268 (314)
                      .. .-.-+.|..+|+ |++
T Consensus       527 ~~~~~~P~ty~~~G~qYv~  545 (582)
T d1flga_         527 SGIVSPPITWEQDGEQYLG  545 (582)
T ss_dssp             SCCCSCCEEEEETTEEEEE
T ss_pred             CCccccCEEEEECCEEEEE
Confidence            21 111255666774 443

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.17  E-value=0.15  Score=37.66  Aligned_cols=211  Identities=4%  Similarity=-0.095  Sum_probs=118.7

Q ss_pred             ecCCCCceeEEEEccCCCEEE-EecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEE-EeecCCeEEEE
Q 021291           14 LRGHRASVTDVCFHQTKPILF-AGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCW   91 (314)
Q Consensus        14 l~~h~~~v~~~~~~~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~v~iw   91 (314)
                      +..+...+.+++|.+..+.|+ +-..++.|+..+++.......+....  ..+.++++..  -++.|+ +-...+.|.+.
T Consensus        31 ~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~--~~p~~iAvD~--~~~~lY~~d~~~~~I~~~  106 (263)
T d1npea_          31 LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDL--GSPEGIALDH--LGRTIFWTDSQLDRIEVA  106 (263)
T ss_dssp             EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTC--CCEEEEEEET--TTTEEEEEETTTTEEEEE
T ss_pred             cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEecc--ccccEEEEec--cCCeEEEeccCCCEEEEE
Confidence            334455678899998665555 44567889988887655444443322  3378888876  445555 44556789999


Q ss_pred             eCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeec-C
Q 021291           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE-Q  170 (314)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~  170 (314)
                      ++.......  +..........                                        +++.|....++.+... .
T Consensus       107 ~~dg~~~~~--l~~~~l~~p~~----------------------------------------l~vdp~~g~ly~t~~~~~  144 (263)
T d1npea_         107 KMDGTQRRV--LFDTGLVNPRG----------------------------------------IVTDPVRGNLYWTDWNRD  144 (263)
T ss_dssp             ETTSCSCEE--EECSSCSSEEE----------------------------------------EEEETTTTEEEEEECCSS
T ss_pred             ecCCceEEE--EecccccCCcE----------------------------------------EEEecccCcEEEeecCCC
Confidence            987653211  11100000000                                        4566766666654322 1


Q ss_pred             cCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeec
Q 021291          171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV  250 (314)
Q Consensus       171 d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~  250 (314)
                      ...|.--++...........            .-.....++ +.+.   ++.+..+-...+.|...|++. ......+.+
T Consensus       145 ~~~I~r~~~dG~~~~~i~~~------------~~~~P~gla-iD~~---~~~lYw~d~~~~~I~~~~~~g-~~~~~v~~~  207 (263)
T d1npea_         145 NPKIETSHMDGTNRRILAQD------------NLGLPNGLT-FDAF---SSQLCWVDAGTHRAECLNPAQ-PGRRKVLEG  207 (263)
T ss_dssp             SCEEEEEETTSCCCEEEECT------------TCSCEEEEE-EETT---TTEEEEEETTTTEEEEEETTE-EEEEEEEEC
T ss_pred             CcEEEEecCCCCCceeeeee------------cccccceEE-Eeec---CcEEEEEeCCCCEEEEEECCC-CCeEEEECC
Confidence            22344445543322222210            122445666 7765   332455556678899999874 333333343


Q ss_pred             CCcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291          251 HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF  289 (314)
Q Consensus       251 h~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~  289 (314)
                      -. ...+|++.. +....+-...+.|...|..+++.+..
T Consensus       208 ~~-~P~~lav~~-~~lYwtd~~~~~I~~~~~~~g~~~~~  244 (263)
T d1npea_         208 LQ-YPFAVTSYG-KNLYYTDWKTNSVIAMDLAISKEMDT  244 (263)
T ss_dssp             CC-SEEEEEEET-TEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CC-CcEEEEEEC-CEEEEEECCCCEEEEEECCCCccceE
Confidence            33 346788874 44456666678899999998887654

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.04  E-value=0.22  Score=38.63  Aligned_cols=75  Identities=12%  Similarity=0.103  Sum_probs=50.9

Q ss_pred             ceeEEEEccCCCEEEEecCC-CeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecC------CeEEEEe
Q 021291           20 SVTDVCFHQTKPILFAGTTG-GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD------GTVKCWD   92 (314)
Q Consensus        20 ~v~~~~~~~~~~~l~s~~~d-g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~v~iwd   92 (314)
                      .....++.++|++++.|+.+ ..+.+||..+......-..... ..-...+..+  |++.++.++.+      ..+.+||
T Consensus        77 ~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~-r~~~~~~~~~--dG~v~v~GG~~~~~~~~~~v~~yd  153 (387)
T d1k3ia3          77 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVA-RGYQSSATMS--DGRVFTIGGSWSGGVFEKNGEVYS  153 (387)
T ss_dssp             SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSC-CSSCEEEECT--TSCEEEECCCCCSSSCCCCEEEEE
T ss_pred             ceeEEEEecCCcEEEeecCCCcceeEecCccCccccccccccc-ccccceeeec--CCceeeeccccccccccceeeeec
Confidence            34456788899999988765 5899999988765432222211 1234566667  88888888753      3689999


Q ss_pred             CCCCC
Q 021291           93 IENGG   97 (314)
Q Consensus        93 ~~~~~   97 (314)
                      ..+.+
T Consensus       154 ~~~~~  158 (387)
T d1k3ia3         154 PSSKT  158 (387)
T ss_dssp             TTTTE
T ss_pred             CCCCc
Confidence            98764

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.69  E-value=0.3  Score=37.41  Aligned_cols=36  Identities=14%  Similarity=0.056  Sum_probs=27.5

Q ss_pred             CcceEEEEEeCCCCeE-EEecCCCcEEEEecCCCeee
Q 021291          252 LEPVLCLSIDESCNGG-ISGGADQKIVLYNLDHSTYV  287 (314)
Q Consensus       252 ~~~v~~~~~~~~~~~l-~s~s~dg~i~iw~~~~~~~~  287 (314)
                      -...+.|++++++++| ++-+..+.|++|++.....+
T Consensus       205 l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l  241 (340)
T d1v04a_         205 FDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTL  241 (340)
T ss_dssp             ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred             CCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCccc
Confidence            4567899999998766 55566788999999866543

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.47  E-value=0.37  Score=37.00  Aligned_cols=110  Identities=15%  Similarity=0.129  Sum_probs=63.8

Q ss_pred             ccCCCceEEEeecCcCeEEEEecC---CC----ceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeec
Q 021291          157 PAEGPKYMAVAGEQLSEVEIWDLN---TA----ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE  229 (314)
Q Consensus       157 ~~~~~~~~~~~g~~d~~i~vwd~~---~~----~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~  229 (314)
                      ++....+.++....+|.+..|.+.   .+    +.++.+..             ...+-.+. +.+.   .. .|+.+-+
T Consensus       138 ~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~-------------~~q~EGCV-vDde---~~-~LyisEE  199 (353)
T d1h6la_         138 SQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM-------------NSQTEGMA-ADDE---YG-SLYIAEE  199 (353)
T ss_dssp             CTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC-------------SSCEEEEE-EETT---TT-EEEEEET
T ss_pred             cCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC-------------CCccceEE-EeCC---CC-cEEEecC
Confidence            455444455556668998888663   22    23344441             22344444 7765   33 7888888


Q ss_pred             CCcEEEEEccCCC----CceEeeec--CCcceEEEEE----eCCCCeEEEecCCCcEEEEecCCC
Q 021291          230 DGSILVWDIRNPG----IPLTAMKV--HLEPVLCLSI----DESCNGGISGGADQKIVLYNLDHS  284 (314)
Q Consensus       230 dg~i~vwd~~~~~----~~~~~~~~--h~~~v~~~~~----~~~~~~l~s~s~dg~i~iw~~~~~  284 (314)
                      +.-|..++.....    ..+....+  ....+..|+.    +.+|.+|+|.-.+++..+||....
T Consensus       200 ~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         200 DEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             TTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             ccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            8777666654211    12222222  3457888876    235556666667889999998875

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.44  E-value=0.028  Score=47.10  Aligned_cols=57  Identities=25%  Similarity=0.219  Sum_probs=42.4

Q ss_pred             CCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEeecCCeEEEEeCCCCCCCC
Q 021291           39 GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSS  100 (314)
Q Consensus        39 dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~  100 (314)
                      .|.|.-+|+.+++.+.....+..   +..-..+.  .+.++++|+.||.++.+|.++++.+.
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~p---~~~g~lst--agglVF~Gt~dg~l~A~Da~TGe~LW  521 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHLP---LWAGVLAT--AGNLVFTGTGDGYFKAFDAKSGKELW  521 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSC---CCSCCEEE--TTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCeEEEEcCCCCcEEeecCCCCC---CccceeEE--cCCeEEEeCCCCeEEEEECCCCcEeE
Confidence            36788899999998887765432   22222233  56788889999999999999998755

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.30  E-value=0.63  Score=38.52  Aligned_cols=60  Identities=18%  Similarity=0.266  Sum_probs=42.8

Q ss_pred             CeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeec
Q 021291          172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV  250 (314)
Q Consensus       172 ~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~  250 (314)
                      |.|.-||+.+++.+-+++.         ..+..+..++   ..     |. ++++|+.||.++.+|.++ ++.+-++.-
T Consensus       457 G~l~AiD~~tGk~~W~~~~---------~~p~~gg~ls---ta-----gg-lVF~G~~dg~l~A~Da~T-Ge~LW~~~~  516 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEH---------VSPWNGGTLT---TA-----GN-VVFQGTADGRLVAYHAAT-GEKLWEAPT  516 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEE---------SSSCCCCEEE---ET-----TT-EEEEECTTSEEEEEETTT-CCEEEEEEC
T ss_pred             ccEEEeCCCCCceEeeecC---------CCCCCCceEE---Ec-----CC-EEEEECCCCeEEEEECCC-CcEeEEEEC
Confidence            6799999999998877763         1111222222   22     44 788899999999999999 888877763

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.24  E-value=0.65  Score=38.64  Aligned_cols=32  Identities=13%  Similarity=0.104  Sum_probs=24.8

Q ss_pred             ccCCCceEEEeecCcCeEEEEecCCCceeeeecc
Q 021291          157 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQ  190 (314)
Q Consensus       157 ~~~~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~  190 (314)
                      +..+. +++ .|+.||.++-+|.++++.+-++..
T Consensus       481 sTagg-lVF-~G~~Dg~l~A~Da~TGe~LW~~~~  512 (596)
T d1w6sa_         481 ATAGD-LVF-YGTLDGYLKARDSDTGDLLWKFKI  512 (596)
T ss_dssp             EETTT-EEE-EECTTSEEEEEETTTCCEEEEEEC
T ss_pred             EecCC-EEE-EECCCCeEEEEECCCCcEeeEEEC
Confidence            34444 333 588899999999999999988874

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.81  E-value=0.59  Score=35.72  Aligned_cols=61  Identities=18%  Similarity=0.136  Sum_probs=36.7

Q ss_pred             eeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeee--cCCcceEEEEEeCCCCeEEEec
Q 021291          206 MCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK--VHLEPVLCLSIDESCNGGISGG  271 (314)
Q Consensus       206 ~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~s  271 (314)
                      ....++ ++|+   ++.++++-+..+.|++|++...+. +....  .-....-.+.+++++..+..++
T Consensus       207 ~pNGI~-~s~d---~~~lyVa~t~~~~i~~y~~~~~~~-l~~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         207 FANGIN-ISPD---GKYVYIAELLAHKIHVYEKHANWT-LTPLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             SEEEEE-ECTT---SSEEEEEEGGGTEEEEEEECTTSC-EEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             ccceeE-ECCC---CCEEEEEeCCCCeEEEEEeCCCcc-cceEEEecCCCCCCccEEecCCCEEEEEE
Confidence            456666 9998   554777778889999999975332 22211  1234456777875433344443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=94.44  E-value=0.77  Score=35.37  Aligned_cols=75  Identities=11%  Similarity=0.095  Sum_probs=47.5

Q ss_pred             ceeEEEEccCCCEEEEecCCC-----------eEEEEeCCCCeEEE--EEe-ccCCcccEEEEEEcccCCCCeEEEeecC
Q 021291           20 SVTDVCFHQTKPILFAGTTGG-----------ELRIWDTVQHRTVS--SSW-VHSAAHGIVSVATGPSIGLNKVISQGRD   85 (314)
Q Consensus        20 ~v~~~~~~~~~~~l~s~~~dg-----------~v~iwd~~~~~~~~--~~~-~~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (314)
                      ++.......+|++++.|+.+.           .+.+||..+++...  ... .+.  ......++.+  ++..++.|+.+
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~--~~~~~~~~~~--~g~i~v~Gg~~   96 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHD--MFCPGISMDG--NGQIVVTGGND   96 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCC--CSSCEEEECT--TSCEEEECSSS
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcc--cceeEEEEec--CCcEEEeecCC
Confidence            333444455888888877531           37799998875322  222 122  1134567778  88888888765


Q ss_pred             -CeEEEEeCCCCCC
Q 021291           86 -GTVKCWDIENGGL   98 (314)
Q Consensus        86 -g~v~iwd~~~~~~   98 (314)
                       ..+.+||..+...
T Consensus        97 ~~~~~~yd~~~~~w  110 (387)
T d1k3ia3          97 AKKTSLYDSSSDSW  110 (387)
T ss_dssp             TTCEEEEEGGGTEE
T ss_pred             CcceeEecCccCcc
Confidence             5899999887643

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.01  E-value=0.75  Score=33.65  Aligned_cols=211  Identities=10%  Similarity=-0.098  Sum_probs=114.4

Q ss_pred             CCCCceeEEEEccCCCEEE-EecCCCeEEEEeCCCCe---EEEE-EeccCCcccEEEEEEcccCCCCeEE-EeecCCeEE
Q 021291           16 GHRASVTDVCFHQTKPILF-AGTTGGELRIWDTVQHR---TVSS-SWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVK   89 (314)
Q Consensus        16 ~h~~~v~~~~~~~~~~~l~-s~~~dg~v~iwd~~~~~---~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~v~   89 (314)
                      .....+.+++|++..+.|+ +=..++.|.-.+++...   .... +....  ..+..|++.+  .+..|+ +-...+.|.
T Consensus        27 ~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~--~~p~glAvD~--~~~~lY~~d~~~~~I~  102 (266)
T d1ijqa1          27 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI--QAPDGLAVDW--IHSNIYWTDSVLGTVS  102 (266)
T ss_dssp             CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC--SCCCEEEEET--TTTEEEEEETTTTEEE
T ss_pred             CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCC--CCcceEEEee--ccceEEEEecCCCEEE
Confidence            3455677899998666555 44456777776665321   1111 22221  2366788876  444444 445567899


Q ss_pred             EEeCCCCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeec
Q 021291           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE  169 (314)
Q Consensus        90 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  169 (314)
                      +.++.......  .......... .                                       +++.|....++.+..+
T Consensus       103 v~~~~g~~~~~--~~~~~~~~P~-~---------------------------------------l~vd~~~g~ly~~~~~  140 (266)
T d1ijqa1         103 VADTKGVKRKT--LFRENGSKPR-A---------------------------------------IVVDPVHGFMYWTDWG  140 (266)
T ss_dssp             EEETTSSSEEE--EEECTTCCEE-E---------------------------------------EEEETTTTEEEEEECS
T ss_pred             eEecCCceEEE--EEcCCCCCcc-e---------------------------------------EEEEcccCeEEEeccC
Confidence            99987653211  1110000000 0                                       4466665566654434


Q ss_pred             CcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeee
Q 021291          170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK  249 (314)
Q Consensus       170 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~  249 (314)
                      ..+.|.-.++..... ..+..        .   .-.....++ +.+.   ++.+..+-...+.|...|+.. ........
T Consensus       141 ~~~~I~r~~~dGs~~-~~l~~--------~---~~~~p~gl~-iD~~---~~~lYw~d~~~~~I~~~~~dG-~~~~~~~~  203 (266)
T d1ijqa1         141 TPAKIKKGGLNGVDI-YSLVT--------E---NIQWPNGIT-LDLL---SGRLYWVDSKLHSISSIDVNG-GNRKTILE  203 (266)
T ss_dssp             SSCEEEEEETTSCCE-EEEEC--------S---SCSCEEEEE-EETT---TTEEEEEETTTTEEEEEETTS-CSCEEEEE
T ss_pred             CCcceeEeccCCCce-ecccc--------c---ccceeeEEE-eecc---ccEEEEecCCcCEEEEEECCC-CCEEEEEe
Confidence            345677777654333 22321        0   112355666 7775   332556666778899999874 33332232


Q ss_pred             cC--CcceEEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEee
Q 021291          250 VH--LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTYVLFG  290 (314)
Q Consensus       250 ~h--~~~v~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~~  290 (314)
                      ..  .....+|++.. +....+-..++.|...+..+++.....
T Consensus       204 ~~~~~~~p~~lav~~-~~ly~td~~~~~I~~~~~~~g~~~~~~  245 (266)
T d1ijqa1         204 DEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLL  245 (266)
T ss_dssp             CTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             CCCcccccEEEEEEC-CEEEEEECCCCeEEEEECCCCcceEEE
Confidence            22  23467788885 344566567788988888887765544

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.30  E-value=1.8  Score=35.66  Aligned_cols=79  Identities=18%  Similarity=0.061  Sum_probs=48.3

Q ss_pred             CeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecC
Q 021291          172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH  251 (314)
Q Consensus       172 ~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h  251 (314)
                      |.|.-+|+.+++.+-+...       +.  ...+..+.   -.     +. ++++|+.||.++.+|.++ ++.+-+++--
T Consensus       444 G~l~AiD~~TG~~~W~~~~-------~~--~~~~g~l~---Ta-----gg-lVf~G~~dg~l~A~Da~t-Ge~lW~~~l~  504 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWE-------KF--AAWGGTLY---TK-----GG-LVWYATLDGYLKALDNKD-GKELWNFKMP  504 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEE-------SS--CCCSBCEE---ET-----TT-EEEEECTTSEEEEEETTT-CCEEEEEECS
T ss_pred             ccEEEeccCCCceeeEcCC-------CC--CCCcceeE---ec-----CC-EEEEECCCCeEEEEECCC-CcEEEEEECC
Confidence            5788889999888766653       11  11111111   11     33 777899999999999999 8888777632


Q ss_pred             Cc-ceEEEEEeCCCC-eEEE
Q 021291          252 LE-PVLCLSIDESCN-GGIS  269 (314)
Q Consensus       252 ~~-~v~~~~~~~~~~-~l~s  269 (314)
                      .. .-.-+.|..+|+ ||+.
T Consensus       505 ~~~~a~P~ty~~dGkqYi~v  524 (571)
T d2ad6a1         505 SGGIGSPMTYSFKGKQYIGS  524 (571)
T ss_dssp             SCCCSCCEEEEETTEEEEEE
T ss_pred             CCceecceEEEECCEEEEEE
Confidence            11 112245545665 4433

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.88  E-value=2.1  Score=31.13  Aligned_cols=177  Identities=10%  Similarity=0.037  Sum_probs=94.2

Q ss_pred             CCceeEEEEccCCC-EEEEecCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEee--cCCeEEEEeCC
Q 021291           18 RASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG--RDGTVKCWDIE   94 (314)
Q Consensus        18 ~~~v~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~--~dg~v~iwd~~   94 (314)
                      ...+..+++.+.+. +..+-...+.|.+.+++.......+....  .....+++.|  ...+|+-..  ..+.|.-.++.
T Consensus        76 ~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~--~~P~~l~vd~--~~g~ly~~~~~~~~~I~r~~~d  151 (266)
T d1ijqa1          76 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG--SKPRAIVVDP--VHGFMYWTDWGTPAKIKKGGLN  151 (266)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTT--CCEEEEEEET--TTTEEEEEECSSSCEEEEEETT
T ss_pred             CCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCC--CCcceEEEEc--ccCeEEEeccCCCcceeEeccC
Confidence            35567889887444 44555677899999988665544444433  3378999988  545555433  23455555554


Q ss_pred             CCCCCCCCeeeeecceeeEEEeeeeeccccccccCCCCcceeeccCCceeeecCCCCCCceeccCCCceEEEeecCcCeE
Q 021291           95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEV  174 (314)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i  174 (314)
                      ......  +.. ...... ..                                      +++.+.++.++.+ -...+.|
T Consensus       152 Gs~~~~--l~~-~~~~~p-~g--------------------------------------l~iD~~~~~lYw~-d~~~~~I  188 (266)
T d1ijqa1         152 GVDIYS--LVT-ENIQWP-NG--------------------------------------ITLDLLSGRLYWV-DSKLHSI  188 (266)
T ss_dssp             SCCEEE--EEC-SSCSCE-EE--------------------------------------EEEETTTTEEEEE-ETTTTEE
T ss_pred             CCceec--ccc-ccccee-eE--------------------------------------EEeeccccEEEEe-cCCcCEE
Confidence            432100  000 000000 00                                      4566777777664 4446889


Q ss_pred             EEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeecCCcEEEEEccCCCCceEeeecCCcc
Q 021291          175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP  254 (314)
Q Consensus       175 ~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~  254 (314)
                      ...|+..........        ...  .......++ +..    +. ++.+-..++.|+..+..+ +.....+......
T Consensus       189 ~~~~~dG~~~~~~~~--------~~~--~~~~p~~la-v~~----~~-ly~td~~~~~I~~~~~~~-g~~~~~~~~~~~~  251 (266)
T d1ijqa1         189 SSIDVNGGNRKTILE--------DEK--RLAHPFSLA-VFE----DK-VFWTDIINEAIFSANRLT-GSDVNLLAENLLS  251 (266)
T ss_dssp             EEEETTSCSCEEEEE--------CTT--TTSSEEEEE-EET----TE-EEEEETTTTEEEEEETTT-CCCCEEEECSCSC
T ss_pred             EEEECCCCCEEEEEe--------CCC--cccccEEEE-EEC----CE-EEEEECCCCeEEEEECCC-CcceEEEEcCCCC
Confidence            988986544333222        110  111234444 332    22 555555677888888776 5555555443333


Q ss_pred             eEEE
Q 021291          255 VLCL  258 (314)
Q Consensus       255 v~~~  258 (314)
                      +.+|
T Consensus       252 p~~i  255 (266)
T d1ijqa1         252 PEDM  255 (266)
T ss_dssp             CCCE
T ss_pred             ceEE
Confidence            3333

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.68  E-value=3  Score=32.67  Aligned_cols=59  Identities=5%  Similarity=0.018  Sum_probs=39.1

Q ss_pred             ceeEEEEccCCCEEEEe-----cCCCeEEEEeCCCCeEEEEEeccCCcccEEEEEEcccCCCCeEEEee
Q 021291           20 SVTDVCFHQTKPILFAG-----TTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG   83 (314)
Q Consensus        20 ~v~~~~~~~~~~~l~s~-----~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (314)
                      .+...+++||++++|-+     +.-..|+++|+.+++.+...-..   .....++|.+  +++.|+-..
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~---~~~~~~~W~~--D~~~~~Y~~  189 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER---VKFSCMAWTH--DGKGMFYNA  189 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE---ECSCCEEECT--TSSEEEEEE
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc---ccccceEEcC--CCCEEEEEE
Confidence            34567889999988742     22347999999999876422111   1125788999  878776543

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.00  E-value=2.8  Score=31.13  Aligned_cols=34  Identities=21%  Similarity=0.240  Sum_probs=26.4

Q ss_pred             EEEEEeCCCCeEEEecCCCcEEEEecCCCeeeEe
Q 021291          256 LCLSIDESCNGGISGGADQKIVLYNLDHSTYVLF  289 (314)
Q Consensus       256 ~~~~~~~~~~~l~s~s~dg~i~iw~~~~~~~~~~  289 (314)
                      .++..++....+..-+.-|.|++||++++..++.
T Consensus       259 vamqvs~kygiiyviTK~G~i~lyDleTgt~i~~  292 (327)
T d1utca2         259 VAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM  292 (327)
T ss_dssp             EEEEEETTTTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             EEEEeeccCCEEEEEecCcEEEEEEcccccEEEE
Confidence            3455566666677777889999999999999885

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=87.28  E-value=3.2  Score=32.54  Aligned_cols=99  Identities=6%  Similarity=0.036  Sum_probs=55.6

Q ss_pred             ceeccCCCceEEEe---ecCcCeEEEEecCCCceeeeecccccCCCCCcCCCCCceeeeEEEecCCCCCCceEEEEeec-
Q 021291          154 DDVPAEGPKYMAVA---GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE-  229 (314)
Q Consensus       154 ~~~~~~~~~~~~~~---g~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~-  229 (314)
                      .+++|+++.++.+.   |+....|+++|+.+++.+.....             ......+. |.++   +..++.+... 
T Consensus       130 ~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-------------~~~~~~~~-W~~D---~~~~~Y~~~~~  192 (430)
T d1qfma1         130 YAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-------------RVKFSCMA-WTHD---GKGMFYNAYPQ  192 (430)
T ss_dssp             EEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-------------EECSCCEE-ECTT---SSEEEEEECCC
T ss_pred             eEecCCCCEEEEEeccccCchheeEEeccCcceecccccc-------------cccccceE-EcCC---CCEEEEEEecc
Confidence            45789998766532   33345799999999986542211             00112344 8887   4424444321 


Q ss_pred             --------------CCcEEEEEccCCCC-ceEeeecC--CcceEEEEEeCCCCeEEE
Q 021291          230 --------------DGSILVWDIRNPGI-PLTAMKVH--LEPVLCLSIDESCNGGIS  269 (314)
Q Consensus       230 --------------dg~i~vwd~~~~~~-~~~~~~~h--~~~v~~~~~~~~~~~l~s  269 (314)
                                    ...|..+.+.+... ....+...  ...+..+..+.++++++.
T Consensus       193 ~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i  249 (430)
T d1qfma1         193 QDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLL  249 (430)
T ss_dssp             CSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEE
T ss_pred             ccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeE
Confidence                          12577777765322 12233322  234667778899988753

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=82.62  E-value=7.4  Score=30.66  Aligned_cols=62  Identities=11%  Similarity=0.133  Sum_probs=43.1

Q ss_pred             eEEecCCCCceeEEEEccCCCEEEEecCCCeEEEEeCCCCeEEEEEec------cCCcccEEEEEEcc
Q 021291           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWV------HSAAHGIVSVATGP   72 (314)
Q Consensus        11 ~~~l~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~------~~~~~~v~~~~~~~   72 (314)
                      +.++-..-..-++|+|.|||++|++--.+|.|++++..+++.......      .........|+++|
T Consensus        19 ~~~ia~~L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~P   86 (450)
T d1crua_          19 KKVILSNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHP   86 (450)
T ss_dssp             EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECT
T ss_pred             EEEEECCCCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCC
Confidence            444443456778999999999988876689999999877654332211      12224578999998

>d1q47a_ b.69.12.1 (A:) Semaphorin 3a {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Sema domain
family: Sema domain
domain: Semaphorin 3a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.38  E-value=3.8  Score=32.89  Aligned_cols=83  Identities=11%  Similarity=0.169  Sum_probs=51.6

Q ss_pred             CCCCceEEecCCCCceeEEEEcc----CC--CEEEEecCCCeEE-EEeCCCCe-------EEEEEeccCCcccEEEEEEc
Q 021291            6 PPPDPVAVLRGHRASVTDVCFHQ----TK--PILFAGTTGGELR-IWDTVQHR-------TVSSSWVHSAAHGIVSVATG   71 (314)
Q Consensus         6 ~~~~~~~~l~~h~~~v~~~~~~~----~~--~~l~s~~~dg~v~-iwd~~~~~-------~~~~~~~~~~~~~v~~~~~~   71 (314)
                      ...+++....+.....++|+.+.    ++  ..++.|+.||.|. +.-...+.       .+..+.......+|..|.++
T Consensus       391 ~~~~pll~~~~~~~~~T~iav~~v~~~~~~~tV~flGT~~G~l~Kv~~~~~~~~~~~~~~~iee~~~~~~~~pI~~l~l~  470 (495)
T d1q47a_         391 INNRPIMIKTDVNYQFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELS  470 (495)
T ss_dssp             GGGSCSEEESSSSSCEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEE
T ss_pred             cCCcceEEecCccceeEEEEEEEEeccCCcEEEEEEEcCCCEEEEEEEcCCCCccccceeEEEEEeecCCCCceEEEEEe
Confidence            33455666666555567776642    22  4678899999876 33222111       23344433444669999999


Q ss_pred             ccCCCCeEEEeecCCeEEE
Q 021291           72 PSIGLNKVISQGRDGTVKC   90 (314)
Q Consensus        72 ~~~~~~~l~s~~~dg~v~i   90 (314)
                      +  +++.|+.++.++.++|
T Consensus       471 ~--~~~~Lyv~t~~~V~~v  487 (495)
T d1q47a_         471 T--KQQQLYIGSTAGVAQL  487 (495)
T ss_dssp             T--TTTEEEEEBSSCEEEE
T ss_pred             C--CCCEEEEEeCCeEEEE
Confidence            9  8899999998876655