Citrus Sinensis ID: 021297

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310----
Protein Sequence
MYPWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQDGMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAVIGMVWLKLIVFIFPPLL
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHccHHHHHccccccHHHHHHHHHHccccccHHHHHHHHHccccccccccccccccccccccccccccEEEEEEccHHHHHHHHHHHHHHcccccccccEEEEEcccccccEEEEEcccccEEEEEEcccccccEEEcccccHHHcccccccccHHHHHHHHHHHHHHHHHcccEEEEcccccccccccccccccccccccccEEEEEEEEEEcccccccccccEEEEEEEEEEEEccccccccccccccEEEEEEEEEEEEccccEEEEEcccEEcHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHcHHHHHHHcccccHHHHHHHHHHHcccccccHEEHEEEcccccccccccccccccEEEEcEEEcccEEEEEcccHHHHHHHHHHHHHHccccccccEEEEEEEcccccEEEEEEccccEEEEEcccccccccccccccHHHcccccccccccccHHHHHHHHHHHHHHHcccEEEEccccEEEEEEccccccccEEEEcccEEEEEEEEEEccccccccccccEEEEEEEEEEEccccccccccccHccEEccEEEEEEcccccEEEcccccEEEHHHHHHHHHEccccc
Coil and Loop (DISEMBL)
MYPWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLkvklpvptrilyrfcdgqecqtddfesigamgliggySFYGHLVNVYLIPLSHIIMETKEIRrhldfpgrdKYVVVAFSSTysekffflnctngqlyvgtknllsdgemipcvPNALIAlghgcnsdqqQDGMLLWLEEHGRRLHNGIIRlrdeenlkfinlfpeepplcsiavtngvkirasavfipeladpesdteKYLFAYSIRMsllpegcvingmtfsscqlQRRHWIIHANNVVVSVVSGEAVIGMVWLKLIVFIFPPLL
Flexible Loop (DISEMBL)
mypwplvkrvkRCWDRLKNWLAENFPEAKATLRKGASEADIQQLekslkvklpvpTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQDGMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKIRASAVfipeladpesDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAVIGMVWLKLIVFIFPPLL
Low Complexity Region (SEG)
MYPWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQDGMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHAnnvvvsvvsGEAVIGMVWLKLIVFIFPPLL
Disordered region (IsUnstruct)
**PWPLVKRVKRCWDRLKNWLAENFPEAKA*************LEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQDGMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAVIGMVWLKLIVFIFP***
Disordered Region (DISOPRED)
*YPWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQDGMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAVIGMVWLKLIVFIFPPLL
Disordered Region (DISEMBL)
MYPWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQDGMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAVIGMVWLKLIVFIFPPLL
Disordered Region (DISPRO)
MYPWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQDGMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAVIGMVWLKLIVFIFPPLL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYPWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQDGMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAVIGMVWLKLIVFIFPPLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	314	2.2.26 [Sep-21-2011]
Q9LND7	436	F-box protein SKIP16 OS=A	yes	no	0.936	0.674	0.59	1e-100
Q9UK99	471	F-box only protein 3 OS=H	no	no	0.770	0.513	0.221	9e-09
D4ABP9	480	F-box only protein 3 OS=R	yes	no	0.770	0.504	0.224	2e-08
A6H7H7	469	F-box only protein 3 OS=B	yes	no	0.773	0.518	0.218	4e-08
Q9DC63	480	F-box only protein 3 OS=M	yes	no	0.770	0.504	0.221	1e-07
Q6BW41	451	KNR4/SMI1 homolog 1 OS=De	yes	no	0.305	0.212	0.284	9e-07
Q6BJY4	590	KNR4/SMI1 homolog 2 OS=De	no	no	0.197	0.105	0.365	3e-05
Q6FL35	584	KNR4/SMI1 homolog OS=Cand	yes	no	0.315	0.169	0.327	6e-05
Q82UC1	127	Protein ApaG OS=Nitrosomo	yes	no	0.200	0.496	0.337	0.0001
P32566	505	Cell wall assembly regula	yes	no	0.270	0.168	0.313	0.0002

>sp|Q9LND7|SKI16_ARATH F-box protein SKIP16 OS=Arabidopsis thaliana GN=SKIP16 PE=1 SV=1

 Score =  364 bits (934), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 177/300 (59%), Positives = 219/300 (73%), Gaps = 6/300 (2%)

Query: 1   MYPWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILY 60
           MYPW LVKRV+ CWD LK WL  NFPEAKATLRKG +E D+Q+ E SLKVKLP+PTR+LY
Sbjct: 80  MYPWNLVKRVRLCWDNLKQWLTLNFPEAKATLRKGVTEDDLQEFETSLKVKLPLPTRLLY 139

Query: 61  RFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKE-IRRHLDFPGRD 119
           RF DGQE  + +    G++GLIGGYS Y H VNVYL+PL  ++ ETKE   R L F  R 
Sbjct: 140 RFVDGQELSSPNGLD-GSLGLIGGYSAYSHDVNVYLLPLKEVMRETKESFMRDLGFSSRL 198

Query: 120 KYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQD 179
             +V+A S   S K F L+CT GQL+ GT N     +++PCVP+AL+   H  N DQQQD
Sbjct: 199 DLIVMAASVVASLKIFLLDCTTGQLFTGTSN----RQLLPCVPDALVRSVHDTNGDQQQD 254

Query: 180 GMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKIRASAVFIPELA 239
            MLLWLEEHGRRL  G I +R + N+K I+LFPE PPLCS++VTNGV++RAS+VFIPE++
Sbjct: 255 AMLLWLEEHGRRLQTGTINVRQQNNVKSISLFPEIPPLCSVSVTNGVQVRASSVFIPEIS 314

Query: 240 DPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAVIG 299
           +       Y +AYSIRMSL+PEGC++NG   SSCQL  RHW+I A+N V+  V+GEAVIG
Sbjct: 315 NLRDQPPAYWYAYSIRMSLMPEGCILNGTHHSSCQLYWRHWVIRADNEVIDNVNGEAVIG 374

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9UK99|FBX3_HUMAN F-box only protein 3 OS=Homo sapiens GN=FBXO3 PE=1 SV=3

 Score = 61.2 bits (147), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 67/303 (22%), Positives = 117/303 (38%), Gaps = 61/303 (20%)

Query: 10  VKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQ 69
           +K+ WD LK +L    P    +L++GA E D+  +E  +  KLP   R  YR  +GQ+  
Sbjct: 96  IKKAWDDLKKYLEPRCPRMVLSLKEGAREEDLDAVEAQIGCKLPDDYRCSYRIHNGQK-- 153

Query: 70  TDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDF---------PGRDK 120
                 +   GL+G  +   H  +  L+ +       ++ R+ L +          G  +
Sbjct: 154 ------LVVPGLLGSMALSNHYRSEDLLDVDTAAGGFQQ-RQGLKYCLPLTFCIHTGLSQ 206

Query: 121 YVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQDG 180
           Y+ V  +   ++   F  C +       +N           P A+     G         
Sbjct: 207 YIAVEAAEGRNKNEVFYQCPDQM----ARN-----------PAAIDMFIIGATFTD---- 247

Query: 181 MLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKIRASAVFIPELAD 240
              W   + + + +G   +  ++  ++++      P C +A T  + +  S  F+PEL+ 
Sbjct: 248 ---WFTSYVKNVVSGGFPIIRDQIFRYVH-----DPEC-VATTGDITVSVSTSFLPELSS 298

Query: 241 PESDTEKYLFAYSIRMSL----LPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEA 296
                  Y F Y IR+ +    LPE          +CQL  R+W I      V  V G  
Sbjct: 299 VHP--PHYFFTYRIRIEMSKDALPE---------KACQLDSRYWRITNAKGDVEEVQGPG 347

Query: 297 VIG 299
           V+G
Sbjct: 348 VVG 350

Substrate recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Mediates the ubiquitination of HIPK2 and probably that of EP300, leading to rapid degradation by the proteasome. In the presence of PML, HIPK2 ubiquitination still occurs, but degradation is prevented. PML, HIPK2 and FBXO3 may act synergically to activate p53/TP53-dependent transactivation.

Homo sapiens (taxid: 9606)

>sp|D4ABP9|FBX3_RAT F-box only protein 3 OS=Rattus norvegicus GN=Fbxo3 PE=3 SV=1

 Score = 60.5 bits (145), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 68/303 (22%), Positives = 116/303 (38%), Gaps = 61/303 (20%)

Query: 10  VKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQ 69
           +K+ WD LK +L    P    +L++GA E D+  +E  +  KLP   R  YR  +GQ+  
Sbjct: 96  IKKAWDDLKKYLEPRCPRMVLSLKEGAREEDLDAVEAQIGCKLPDDYRCSYRIHNGQK-- 153

Query: 70  TDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDF---------PGRDK 120
                 +   GL+G  +   H  +  L+ +       ++ R+ L +          G  +
Sbjct: 154 ------LVVPGLLGSMALSNHYRSEDLLDVDTAAGGFQQ-RQGLKYCLPLTFCIHTGLSQ 206

Query: 121 YVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQDG 180
           Y+ V  +   ++   F  C +       +N           P A+     G         
Sbjct: 207 YIAVEAAEGRNKNEVFYQCPDQM----ARN-----------PAAIDMFIIGAT------- 244

Query: 181 MLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKIRASAVFIPELAD 240
              W   +   + +G   +  ++  ++I+      P C +A T  + +  S  F+PEL+ 
Sbjct: 245 FTDWFTSYVNNVVSGGFPIIRDQIFRYIH-----DPEC-VATTGDITVSVSTSFLPELSS 298

Query: 241 PESDTEKYLFAYSIRMSL----LPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEA 296
                  Y F Y IR+ +    LPE          +CQL  R+W I      V  V G  
Sbjct: 299 VHP--PHYFFTYRIRIEMSRDALPE---------KACQLDSRYWRITNAKGDVEEVQGPG 347

Query: 297 VIG 299
           V+G
Sbjct: 348 VVG 350

Substrate recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Mediates the ubiquitination of HIPK2, and probably that of EP300, leading to rapid degradation by the proteasome. In the presence of PML, HIPK2 ubiquitination still occurs, but degradation is prevented. PML, HIPK2 and FBXO3 may act synergically to activate p53/TP53-dependent transactivation.

Rattus norvegicus (taxid: 10116)

>sp|A6H7H7|FBX3_BOVIN F-box only protein 3 OS=Bos taurus GN=FBXO3 PE=2 SV=1

 Score = 58.9 bits (141), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 66/302 (21%), Positives = 115/302 (38%), Gaps = 59/302 (19%)

Query: 10  VKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQ 69
           +K+ WD LK +L    P    +L++GA E D+  +E  +  KLP   R  YR  +GQ+  
Sbjct: 96  IKKAWDDLKKYLEPRCPRMVLSLKEGAREEDLDAVEAQIGCKLPDDYRCSYRIHNGQK-- 153

Query: 70  TDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHI---IMETKEIRRHLDF-----PGRDKY 121
                 +   GL+G  +   H  +  L+ +        + + ++  L        G  +Y
Sbjct: 154 ------LVVPGLLGSMALSNHYRSEDLLDVDTAAGGFQQRQGLKSCLPLTFCIHTGLSQY 207

Query: 122 VVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQDGM 181
           + V  +   ++   F  C +       +N           P A+     G          
Sbjct: 208 IAVEAAEGRNKNEVFYQCPDQM----ARN-----------PAAIDMFIIGAT-------F 245

Query: 182 LLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKIRASAVFIPELADP 241
             W   +   + +G   +  ++  ++++      P C +A T  + +  S  F+PEL+  
Sbjct: 246 TDWFTSYVNSVVSGGFPIIRDQIFRYVH-----DPEC-VATTGDITVSVSTSFLPELSSV 299

Query: 242 ESDTEKYLFAYSIRMSL----LPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAV 297
                 Y F Y IR+ +    LPE          +CQL  R+W I      V  V G  V
Sbjct: 300 HP--PHYFFTYRIRIEMSKDALPE---------KACQLDSRYWRITNAKGDVEEVQGPGV 348

Query: 298 IG 299
           +G
Sbjct: 349 VG 350

Substrate recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Mediates the ubiquitination of HIPK2 and probably that of EP300, leading to rapid degradation by the proteasome. In the presence of PML, HIPK2 ubiquitination still occurs, but degradation is prevented. PML, HIPK2 and FBXO3 may act synergically to activate p53/TP53-dependent transactivation.

Bos taurus (taxid: 9913)

>sp|Q9DC63|FBX3_MOUSE F-box only protein 3 OS=Mus musculus GN=Fbxo3 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/303 (22%), Positives = 115/303 (37%), Gaps = 61/303 (20%)

Query: 10  VKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQ 69
           +K+ W  LK +L    P    +L++GA E D+  +E  +  KLP   R  YR  +GQ+  
Sbjct: 96  IKKAWRDLKKYLEPRCPRMVLSLKEGAREEDLDAVEAQIGCKLPDDYRCSYRIHNGQK-- 153

Query: 70  TDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDF---------PGRDK 120
                 +   GL+G  +   H  +  L+ +       ++ R+ L +          G  +
Sbjct: 154 ------LVVPGLLGSMALSNHYRSEDLLDVDTAAGGFQQ-RQGLKYCLPLTFCIHTGLSQ 206

Query: 121 YVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQDG 180
           Y+ V  +   ++   F  C +       +N           P A+     G         
Sbjct: 207 YIAVEAAEGRNKNEVFYQCPDQM----ARN-----------PAAIDMFIIGAT------- 244

Query: 181 MLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKIRASAVFIPELAD 240
              W   +   + +G   +  ++  ++I+      P C +A T  + +  S  F+PEL+ 
Sbjct: 245 FTDWFTSYVNNVVSGGFPIIRDQIFRYIH-----DPEC-VATTGDITVSVSTSFLPELSS 298

Query: 241 PESDTEKYLFAYSIRMSL----LPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEA 296
                  Y F Y IR+ +    LPE          +CQL  R+W I      V  V G  
Sbjct: 299 VHP--PHYFFTYRIRIEMSRDALPE---------KACQLDSRYWRITNAKGDVEEVQGPG 347

Query: 297 VIG 299
           V+G
Sbjct: 348 VVG 350

Substrate recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Mediates the ubiquitination of HIPK2 and probably that of EP300, leading to rapid degradation by the proteasome. In the presence of PML, HIPK2 ubiquitination still occurs, but degradation is prevented. PML, HIPK2 and FBXO3 may act synergically to activate p53/TP53-dependent transactivation.

Mus musculus (taxid: 10090)

>sp|Q6BW41|SMI1_DEBHA KNR4/SMI1 homolog 1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=DEHA2B14542g PE=3 SV=2

 Score = 54.7 bits (130), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 13/109 (11%)

Query: 7   VKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQ 66
           V  V+  W  +KNWL +  P+  +TL+   ++AD+   +K L +KLP      Y+  DGQ
Sbjct: 70  VHEVRLAWRHIKNWLLKYSPDLNSTLQSPCTDADLSDFQKDLNIKLPNCLIEFYKITDGQ 129

Query: 67  ECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDF 115
                 F   G+ GL+ G         + L+P+  +++ T+  R+  D+
Sbjct: 130 SY----FNDNGSGGLVFG---------LKLMPIDEVMVMTEHWRKVADY 165

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

>sp|Q6BJY4|SMI2_DEBHA KNR4/SMI1 homolog 2 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=DEHA2F26422g PE=3 SV=2

 Score = 49.7 bits (117), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 5   PLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKV-KLPVPTRILYRFC 63
           P +  +   WDR+++WL E +PE    L  G + AD+ + E  L    LPV  R  Y+  
Sbjct: 112 PPLPSIDSLWDRIESWLEEEYPELGDNLNDGVTTADLNEFENDLGCGSLPVEIRQFYKRH 171

Query: 64  DGQ 66
           DGQ
Sbjct: 172 DGQ 174

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

>sp|Q6FL35|SMI1_CANGA KNR4/SMI1 homolog OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=CAGL0L06534g PE=3 SV=1

 Score = 48.5 bits (114), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 50/113 (44%), Gaps = 14/113 (12%)

Query: 3   PWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRF 62
           P   V  V   W  +  W +E  P+  ATL    +  DI+  E+ L+V LP   +  YR 
Sbjct: 71  PSEGVSEVLLAWRHIDTWTSEYNPDLNATLSDPCTANDIKHAEEDLEVVLPKALKASYRI 130

Query: 63  CDGQECQTDDFESI-GAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLD 114
            DGQE    D ES+ G  GLI G         + L+ L  I+  T+  R   D
Sbjct: 131 HDGQE----DLESMTGTSGLIYG---------LQLMTLDEIVAMTQRWRSVAD 170

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

>sp|Q82UC1|APAG_NITEU Protein ApaG OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) GN=apaG PE=3 SV=1

 Score = 47.8 bits (112), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 11/74 (14%)

Query: 226 VKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHAN 285
           +K+    +++P+ +DPE+  E+Y+FAY+I          IN     + QL  RHWII + 
Sbjct: 9   IKVEVRTIYLPDQSDPEA--ERYVFAYTI---------TINNTGSVASQLVSRHWIITSG 57

Query: 286 NVVVSVVSGEAVIG 299
           + V   V G  V+G
Sbjct: 58  DGVTREVRGLGVVG 71

Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) (taxid: 228410)

>sp|P32566|SMI1_YEAST Cell wall assembly regulator SMI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SMI1 PE=1 SV=1

 Score = 47.4 bits (111), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 14/99 (14%)

Query: 13  CWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDD 72
            W  +  W +E+ P+  ATL    ++ DI   E+ L+V  P P +  ++  DGQE    D
Sbjct: 93  AWRHIDFWTSEHNPDLNATLSDPCTQNDITHAEEDLEVSFPNPVKASFKIHDGQE----D 148

Query: 73  FESI-GAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIR 110
            ES+ G  GL     FYG      L+ L  ++  T+  R
Sbjct: 149 LESMTGTSGL-----FYG----FQLMTLDQVVAMTQAWR 178

Protein involved in the regulation of cell wall assembly and 1,3-beta-glucan synthesis, possibly through the transcriptional regulation of cell wall glucan and chitin synthesis.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	314
182407842	443	F-box-containing protein 2 [Malus x dome	0.952	0.674	0.692	1e-121
363807331	443	uncharacterized protein LOC100778108 [Gl	0.952	0.674	0.688	1e-119
225433984	444	PREDICTED: F-box protein SKIP16-like [Vi	0.949	0.671	0.688	1e-117
388508926	444	unknown [Lotus japonicus]	0.952	0.673	0.669	1e-116
255577191	446	protein with unknown function [Ricinus c	0.952	0.670	0.665	1e-116
359478141	443	PREDICTED: F-box protein SKIP16-like [Vi	0.952	0.674	0.668	1e-115
224133222	442	predicted protein [Populus trichocarpa]	0.942	0.669	0.668	1e-114
449498839	441	PREDICTED: LOW QUALITY PROTEIN: F-box pr	0.952	0.678	0.654	1e-113
449459850	449	PREDICTED: LOW QUALITY PROTEIN: F-box pr	0.952	0.665	0.654	1e-112
224093067	443	predicted protein [Populus trichocarpa]	0.952	0.674	0.655	1e-112

>gi|182407842|gb|ACB87912.1| F-box-containing protein 2 [Malus x domestica]

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 209/302 (69%), Positives = 250/302 (82%), Gaps = 3/302 (0%)

Query: 1   MYPWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILY 60
           MYPW LVKRVKRCWD+++NWL  NFPEA +TL+KGASEADIQ++EK LKVKLP+PTRILY
Sbjct: 80  MYPWSLVKRVKRCWDKIRNWLTINFPEAVSTLKKGASEADIQEVEKILKVKLPLPTRILY 139

Query: 61  RFCDGQECQTDDFES--IGA-MGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFPG 117
           RF +GQ  +   F++  +G  +GLIGGY+FY  LV VYL+PL  +++ET +IRR L F G
Sbjct: 140 RFHNGQAFEEKHFQNNLVGCPLGLIGGYAFYDQLVTVYLMPLRQVVLETMKIRRKLGFTG 199

Query: 118 RDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQ 177
           R +YVVVA S  YS K FFLNCT+GQLYVGT+NL +DG+M+PCVP+ALI+  H CN D+Q
Sbjct: 200 RSEYVVVADSCAYSGKLFFLNCTSGQLYVGTRNLPTDGQMLPCVPDALISSIHDCNVDRQ 259

Query: 178 QDGMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKIRASAVFIPE 237
           QDGMLLWLEEHGRRL NGII+LR EEN + I+ FPEE PLCS A+TNGVK+RASAVF+PE
Sbjct: 260 QDGMLLWLEEHGRRLENGIIKLRQEENFRTISQFPEESPLCSTAITNGVKVRASAVFVPE 319

Query: 238 LADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAV 297
            AD E+ +EKY F+YSIRMS LPEGCVINGM FSSCQL RRHWII +N+VVV+ V GEAV
Sbjct: 320 CADLENTSEKYTFSYSIRMSFLPEGCVINGMPFSSCQLNRRHWIIRSNDVVVADVGGEAV 379

Query: 298 IG 299
           IG
Sbjct: 380 IG 381

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807331|ref|NP_001242370.1| uncharacterized protein LOC100778108 [Glycine max] gi|255641731|gb|ACU21136.1| unknown [Glycine max]

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 208/302 (68%), Positives = 247/302 (81%), Gaps = 3/302 (0%)

Query: 1   MYPWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILY 60
           MYPW LVKRVKRCWD++K WL  NFPEA+ATL KGA+EADIQ+LE  LKVKLP+P+RILY
Sbjct: 80  MYPWSLVKRVKRCWDKIKTWLTNNFPEAEATLCKGATEADIQELENVLKVKLPLPSRILY 139

Query: 61  RFCDGQECQTDDFESI---GAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFPG 117
           RF +GQE    D E+     ++GLIGGYSFY HLVNVYL+P+  II+ETK+ RRHL F  
Sbjct: 140 RFHNGQEIAKADPETTTYGSSLGLIGGYSFYSHLVNVYLLPIRQIILETKQTRRHLSFLR 199

Query: 118 RDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQ 177
           R KYV+VA SSTYS K FFL+CTNGQLYVGT++LL++G++IPCVP+ LI L    N  +Q
Sbjct: 200 RSKYVLVAASSTYSRKLFFLSCTNGQLYVGTRDLLTEGDIIPCVPHDLINLHQELNISEQ 259

Query: 178 QDGMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKIRASAVFIPE 237
           QD MLLWLEEHGRRL +G I+L D+ N K INLFPEEPPLCS+AVTNGVK+RASA+ IPE
Sbjct: 260 QDAMLLWLEEHGRRLEHGFIKLHDKGNGKSINLFPEEPPLCSMAVTNGVKVRASALVIPE 319

Query: 238 LADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAV 297
           L D + D EKYLFAYSIR+SL P+GC INGM+FSSCQL  RHWII AN++V+S V+GEAV
Sbjct: 320 LIDLQDDLEKYLFAYSIRLSLEPQGCTINGMSFSSCQLHWRHWIIRANDIVISDVNGEAV 379

Query: 298 IG 299
           IG
Sbjct: 380 IG 381

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433984|ref|XP_002271000.1| PREDICTED: F-box protein SKIP16-like [Vitis vinifera]

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 208/302 (68%), Positives = 240/302 (79%), Gaps = 4/302 (1%)

Query: 1   MYPWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILY 60
           MYPWPLVKRVKRCWDRLKNWL+ NFPEA ATLRKGA+E +I+ LE  LKVKLP+PTR+LY
Sbjct: 82  MYPWPLVKRVKRCWDRLKNWLSANFPEADATLRKGATEVEIEALENILKVKLPLPTRLLY 141

Query: 61  RFCDGQECQTDDFESIG---AMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFPG 117
           RFCDGQE  TDD        ++G+IGGY FY HLVNV L+PL  +I+ETKEI   L F  
Sbjct: 142 RFCDGQEL-TDDVGGTALGSSLGIIGGYCFYDHLVNVCLLPLRQVILETKEITDQLGFST 200

Query: 118 RDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQ 177
             KYV+VA SSTY  KFFFLNCT GQLYVGT++L+S GEMIPCVPNALI+  H  N+ QQ
Sbjct: 201 TSKYVIVAASSTYIGKFFFLNCTTGQLYVGTRSLVSAGEMIPCVPNALISPMHDSNTGQQ 260

Query: 178 QDGMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKIRASAVFIPE 237
           QD MLLWLEEH RRL NGII+LR+E  ++ INLFPEE PLCS AVTNGV++RASAVFIPE
Sbjct: 261 QDAMLLWLEEHVRRLQNGIIKLRNEGMIRSINLFPEESPLCSTAVTNGVQVRASAVFIPE 320

Query: 238 LADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAV 297
             +   ++ KYLFAYSIRM LLPEGC++NG +F SCQL  RHWII AN+ VVS V+ EAV
Sbjct: 321 GCNLLDESHKYLFAYSIRMRLLPEGCIVNGTSFGSCQLNWRHWIIRANDHVVSEVNAEAV 380

Query: 298 IG 299
           IG
Sbjct: 381 IG 382

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508926|gb|AFK42529.1| unknown [Lotus japonicus]

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 203/303 (66%), Positives = 244/303 (80%), Gaps = 4/303 (1%)

Query: 1   MYPWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILY 60
           MYPW LVKRVK+CWD+LK WL  NFPEA+ATL KGASEA+I +LE  L+VKLP+PTRILY
Sbjct: 82  MYPWSLVKRVKQCWDKLKTWLVNNFPEAEATLCKGASEAEILELENVLEVKLPLPTRILY 141

Query: 61  RFCDGQECQTDDFESI---GAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFPG 117
           RF +GQE    D ES     ++GLIGGYSFY HLVNVYL+PL  +I+ET+ + RHL F  
Sbjct: 142 RFHNGQEIANGDLESDTFGSSLGLIGGYSFYSHLVNVYLLPLRQVILETQNLTRHLGFLR 201

Query: 118 RDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQ 177
           R KYV+VA SST +EK FFLNC +GQLYVGT+   +  ++IPCVP+ LI+L HG N++QQ
Sbjct: 202 RSKYVLVAASSTQNEKLFFLNCIDGQLYVGTRTFFTSEDLIPCVPHNLISL-HGLNNEQQ 260

Query: 178 QDGMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKIRASAVFIPE 237
           QD MLLW EEHGRRL  G I+L +E N + INLFPEEPPLCS  +TNGV++RASA+F+PE
Sbjct: 261 QDAMLLWFEEHGRRLQQGFIKLHEEGNNRSINLFPEEPPLCSTVITNGVQVRASALFVPE 320

Query: 238 LADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAV 297
           L+D + D EKYLFAYSIRMSL PEGC+INGM+FSSCQL  RHWII AN++VVS V+GEAV
Sbjct: 321 LSDLQDDLEKYLFAYSIRMSLHPEGCIINGMSFSSCQLHWRHWIIRANDIVVSDVNGEAV 380

Query: 298 IGM 300
           IGM
Sbjct: 381 IGM 383

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577191|ref|XP_002529478.1| protein with unknown function [Ricinus communis] gi|223531036|gb|EEF32888.1| protein with unknown function [Ricinus communis]

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 203/305 (66%), Positives = 244/305 (80%), Gaps = 6/305 (1%)

Query: 1   MYPWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILY 60
           MYPWPLVKRVKRCWDRLKNWL  NFPEA ATL++GA+E +I++ EK L+VKLP+PTR+LY
Sbjct: 80  MYPWPLVKRVKRCWDRLKNWLTTNFPEAAATLQQGATEDEIRRFEKVLEVKLPLPTRVLY 139

Query: 61  RFCDGQECQTDDFESIG---AMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFPG 117
           RF +GQ  Q  D  +      +GLIGGY+FY HLVNVYL+PL  +I+ETK+I  HL   G
Sbjct: 140 RFYNGQVFQEKDALTSAHGNNLGLIGGYAFYHHLVNVYLLPLDQVILETKQIVCHLGISG 199

Query: 118 ---RDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNS 174
                KY+VVA SS + EKFFFLNCTNGQLYVGT+NL  DGEM+PCVPNAL+   H  +S
Sbjct: 200 GFNSTKYIVVAASSAFIEKFFFLNCTNGQLYVGTRNLPIDGEMMPCVPNALLRSVHDPSS 259

Query: 175 DQQQDGMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKIRASAVF 234
           DQQ+DGMLLWLEEHGRRL +GII+LR+E N++ I  FPEEPP CS A+TNGVK+RASA+F
Sbjct: 260 DQQRDGMLLWLEEHGRRLQDGIIKLREERNIRTICQFPEEPPSCSTAITNGVKVRASAIF 319

Query: 235 IPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSG 294
           +PE AD +  ++KY FAYSIRMSLLP+GC++NGM F+SCQLQ+RHWII AN  VVS V G
Sbjct: 320 VPEAADLDGGSDKYWFAYSIRMSLLPDGCIVNGMYFASCQLQKRHWIIRANETVVSDVVG 379

Query: 295 EAVIG 299
           E VIG
Sbjct: 380 EGVIG 384

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478141|ref|XP_002271295.2| PREDICTED: F-box protein SKIP16-like [Vitis vinifera]

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/302 (66%), Positives = 238/302 (78%), Gaps = 3/302 (0%)

Query: 1   MYPWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILY 60
           MYPWPLVKRVKRCWDRLKNWL+ NFP+A ATLRKGA+E +I+ LE  LKVKLP+PTR+LY
Sbjct: 80  MYPWPLVKRVKRCWDRLKNWLSANFPDADATLRKGATEVEIEALENILKVKLPLPTRLLY 139

Query: 61  RFCDGQECQTDDFESI---GAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFPG 117
           RFCDGQE   +D       G++G++GGY    HLVNV L+PL  +I+ETKEI   L F  
Sbjct: 140 RFCDGQELTEEDVGGTALGGSLGIMGGYCCNDHLVNVCLLPLRQVILETKEITDQLGFST 199

Query: 118 RDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQ 177
             KYV+VA SSTY  KFFFLNCT GQLYVGT++L+S GEMIPCVPNALI+  H  N+ QQ
Sbjct: 200 TSKYVIVAASSTYIGKFFFLNCTTGQLYVGTRSLVSAGEMIPCVPNALISPMHDMNTGQQ 259

Query: 178 QDGMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKIRASAVFIPE 237
           QD MLLWLEEH RRL NGII+LR E  ++ INLFPEEPPLCS AVTNG+++RASAVFIPE
Sbjct: 260 QDAMLLWLEEHVRRLQNGIIKLRKEGMIRSINLFPEEPPLCSTAVTNGIQVRASAVFIPE 319

Query: 238 LADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAV 297
             +    + KY+FAYSIRM LLPEGC++NG++F SCQL  RHWII AN+ VVS V+ EAV
Sbjct: 320 GCNLRDKSHKYVFAYSIRMRLLPEGCIVNGISFGSCQLNWRHWIIRANDHVVSEVNAEAV 379

Query: 298 IG 299
           IG
Sbjct: 380 IG 381

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133222|ref|XP_002327990.1| predicted protein [Populus trichocarpa] gi|222837399|gb|EEE75778.1| predicted protein [Populus trichocarpa]

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 202/302 (66%), Positives = 239/302 (79%), Gaps = 6/302 (1%)

Query: 1   MYPWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILY 60
           MYPW LVKRVK CWDRLK+WL  NFPE KATL +GASE +IQ+LE+ LKVKLP+PTR+LY
Sbjct: 82  MYPWSLVKRVKSCWDRLKSWLTTNFPEVKATLGRGASEGEIQELERILKVKLPLPTRLLY 141

Query: 61  RFCDGQECQTDDFESIGA---MGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFPG 117
           RF DGQ    ++  +  A   +GLIGGY FY HLVNVYL+PL  +I+ET+EI RHLD P 
Sbjct: 142 RFHDGQNLTGENLNTDAAACLLGLIGGYCFYDHLVNVYLLPLHEVILETREIVRHLDLPN 201

Query: 118 RDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQ 177
             +++VVA SS+   KFFFLNC++GQLYVGT+NLL+ GEMIPCVP  LI+  H  N DQQ
Sbjct: 202 GSQFIVVAASSSNIGKFFFLNCSDGQLYVGTQNLLTIGEMIPCVPQTLISPVHDFNIDQQ 261

Query: 178 QDGMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKIRASAVFIPE 237
           QD MLLWLEEHG RLHNG+I+LRDE N+K I+LFPEE PLCS AVTNGVK+RASA+F+PE
Sbjct: 262 QDAMLLWLEEHGHRLHNGMIKLRDEGNIKSISLFPEESPLCSTAVTNGVKVRASAIFVPE 321

Query: 238 LADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAV 297
             D    + KYLFAYSIRMSL PEGC+INGM FSSCQL  RHW+I A++ V S V+ EAV
Sbjct: 322 AVDL---SRKYLFAYSIRMSLPPEGCIINGMRFSSCQLHLRHWVISADDTVASNVNAEAV 378

Query: 298 IG 299
           IG
Sbjct: 379 IG 380

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449498839|ref|XP_004160649.1| PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP16-like [Cucumis sativus]

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/301 (65%), Positives = 237/301 (78%), Gaps = 2/301 (0%)

Query: 1   MYPWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILY 60
           MYPWPLVKRVKRCWDRLKNWL+ NFPEA  TLR GASEADI++LE  LKVKLP+PTRILY
Sbjct: 80  MYPWPLVKRVKRCWDRLKNWLSTNFPEALRTLRDGASEADIEELENVLKVKLPLPTRILY 139

Query: 61  RFCDGQECQTDDFESIGA--MGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFPGR 118
           RF +GQE +    +SI    +GLIGGY+FYG  VNVYL+PL  ++ ETK I R + F  +
Sbjct: 140 RFHNGQELKGGYVDSIRGFPLGLIGGYTFYGETVNVYLLPLRQVVFETKSIIRDVGFQXK 199

Query: 119 DKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQ 178
            K++VVA SST++EK FFLNC +GQL+VGT  L  DGEMIPCVP ALI   H CN++QQQ
Sbjct: 200 SKFIVVASSSTFTEKVFFLNCASGQLFVGTAKLRDDGEMIPCVPGALINSVHECNTEQQQ 259

Query: 179 DGMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKIRASAVFIPEL 238
           D MLLWLEEH RRL NGII+LR+ +N++ I+LFPEEPPLCS AVTNGV++RASA+F+PE 
Sbjct: 260 DAMLLWLEEHVRRLENGIIKLREIKNIRSISLFPEEPPLCSTAVTNGVRVRASAIFLPES 319

Query: 239 ADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAVI 298
            D    +  + FAYSIRMSL  EGC+INGM F+SCQL  RHW + AN+ V+S+V GEAVI
Sbjct: 320 TDILDSSGNHQFAYSIRMSLQDEGCIINGMIFNSCQLHLRHWKVRANDHVISIVDGEAVI 379

Query: 299 G 299
           G
Sbjct: 380 G 380

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459850|ref|XP_004147659.1| PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP16-like [Cucumis sativus]

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 197/301 (65%), Positives = 237/301 (78%), Gaps = 2/301 (0%)

Query: 1   MYPWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILY 60
           MYPWPLVKRVKRCWDRLKNWL+ NFPEA  TLR GASEADI++LE  LKVKLP+PTRILY
Sbjct: 88  MYPWPLVKRVKRCWDRLKNWLSTNFPEALRTLRDGASEADIEELENVLKVKLPLPTRILY 147

Query: 61  RFCDGQECQTDDFESIGA--MGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFPGR 118
           RF +GQE +    +SI    +GLIGGY+FYG  VNVYL+PL  ++ ETK I R + F  +
Sbjct: 148 RFHNGQELKGGYVDSIRGFPLGLIGGYTFYGETVNVYLLPLRQVVFETKSIIRDVGFSRK 207

Query: 119 DKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQ 178
            K++VVA SST++EK FFLNC +GQL+VGT  L  DGEMIPCVP ALI   H CN++QQQ
Sbjct: 208 SKFIVVASSSTFTEKVFFLNCASGQLFVGTAKLRDDGEMIPCVPGALINSVHECNTEQQQ 267

Query: 179 DGMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKIRASAVFIPEL 238
           D MLLWLEEH RRL NGII+LR+ +N++ I+LFPEEPPLCS AVTNGV++RASA+F+PE 
Sbjct: 268 DAMLLWLEEHVRRLENGIIKLREIKNIRSISLFPEEPPLCSTAVTNGVRVRASAIFLPES 327

Query: 239 ADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAVI 298
            D    +  + FAYSIRMSL  EGC+INGM F+SCQL  RHW + AN+ V+S+V GEAVI
Sbjct: 328 TDILDSSGNHQFAYSIRMSLQDEGCIINGMIFNSCQLHLRHWKVRANDHVISIVDGEAVI 387

Query: 299 G 299
           G
Sbjct: 388 G 388

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093067|ref|XP_002309790.1| predicted protein [Populus trichocarpa] gi|222852693|gb|EEE90240.1| predicted protein [Populus trichocarpa]

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 198/302 (65%), Positives = 235/302 (77%), Gaps = 3/302 (0%)

Query: 1   MYPWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILY 60
           MYPWPLVKRVK CWDRL +WL  NFPE KATL KGASE +IQ+LE+ LKVKLP+PTR+LY
Sbjct: 80  MYPWPLVKRVKSCWDRLTSWLTANFPEVKATLGKGASEGEIQKLERILKVKLPLPTRLLY 139

Query: 61  RFCDGQECQTDDFESIGA---MGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFPG 117
           RF DGQ     +     A   +GLIGGY FY H VNVYL+ L  +I +T+EI RHL+ P 
Sbjct: 140 RFHDGQHFSDKNLSGGMAGCPLGLIGGYCFYNHSVNVYLLSLHEVISKTQEIVRHLNLPD 199

Query: 118 RDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQ 177
             +Y+VVA SS+Y  KFFFLNC++GQLYVGT+N  +D EM+PCVP ALI+     NSDQQ
Sbjct: 200 TSEYIVVAASSSYVGKFFFLNCSDGQLYVGTQNFPTDAEMMPCVPQALISPVRDFNSDQQ 259

Query: 178 QDGMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKIRASAVFIPE 237
           QD MLLWLEEHGRRLHNG+I++  + N+K I+ FPEE PLCS AVT+GVK+RASAVF+PE
Sbjct: 260 QDAMLLWLEEHGRRLHNGMIKILGKGNIKSISQFPEESPLCSTAVTSGVKVRASAVFVPE 319

Query: 238 LADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAV 297
            AD E  + KY+FAYSIRMSLLPEGC+INGM FSSCQL  RHW+I AN+  VS V+ EAV
Sbjct: 320 AADLEDISTKYVFAYSIRMSLLPEGCIINGMHFSSCQLHLRHWVISANDTAVSNVNAEAV 379

Query: 298 IG 299
           IG
Sbjct: 380 IG 381

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	314
TAIR|locus:2198826	436	SKIP16 "SKP1/ASK-interacting p	0.936	0.674	0.58	3.1e-90
UNIPROTKB|A6H7H7	469	FBXO3 "F-box only protein 3" [	0.235	0.157	0.328	7.5e-08
UNIPROTKB|Q9UK99	471	FBXO3 "F-box only protein 3" [	0.235	0.157	0.328	7.6e-08
RGD|1593433	480	Fbxo3 "F-box protein 3" [Rattu	0.235	0.154	0.328	1e-07
ZFIN|ZDB-GENE-050522-269	451	fbxo3 "F-box protein 3" [Danio	0.235	0.164	0.328	4.4e-07
MGI|MGI:1929084	480	Fbxo3 "F-box protein 3" [Mus m	0.235	0.154	0.315	8.2e-07

TAIR|locus:2198826 SKIP16 "SKP1/ASK-interacting protein 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 900 (321.9 bits), Expect = 3.1e-90, P = 3.1e-90
 Identities = 174/300 (58%), Positives = 213/300 (71%)

Query:     1 MYPWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILY 60
             MYPW LVKRV+ CWD LK WL  NFPEAKATLRKG +E D+Q+ E SLKVKLP+PTR+LY
Sbjct:    80 MYPWNLVKRVRLCWDNLKQWLTLNFPEAKATLRKGVTEDDLQEFETSLKVKLPLPTRLLY 139

Query:    61 RFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKE-IRRHLDFPGRD 119
             RF DGQE  + +    G++GLIGGYS Y H VNVYL+PL  ++ ETKE   R L F  R 
Sbjct:   140 RFVDGQELSSPNGLD-GSLGLIGGYSAYSHDVNVYLLPLKEVMRETKESFMRDLGFSSRL 198

Query:   120 KYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQD 179
               +V+A S   S K F L+CT GQL+ GT N     +++PCVP+AL+   H  N DQQQD
Sbjct:   199 DLIVMAASVVASLKIFLLDCTTGQLFTGTSNR----QLLPCVPDALVRSVHDTNGDQQQD 254

Query:   180 GMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKIRASAVFIPELA 239
              MLLWLEEHGRRL  G I +R + N+K I+LFPE PPLCS++VTNGV++RAS+VFIPE++
Sbjct:   255 AMLLWLEEHGRRLQTGTINVRQQNNVKSISLFPEIPPLCSVSVTNGVQVRASSVFIPEIS 314

Query:   240 DPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHAXXXXXXXXXGEAVIG 299
             +       Y +AYSIRMSL+PEGC++NG   SSCQL  RHW+I A         GEAVIG
Sbjct:   315 NLRDQPPAYWYAYSIRMSLMPEGCILNGTHHSSCQLYWRHWVIRADNEVIDNVNGEAVIG 374

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

GO:0019005 "SCF ubiquitin ligase complex" evidence=IPI

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

UNIPROTKB|A6H7H7 FBXO3 "F-box only protein 3" [Bos taurus (taxid:9913)]

 Score = 110 (43.8 bits), Expect = 7.5e-08, Sum P(2) = 7.5e-08
 Identities = 25/76 (32%), Positives = 38/76 (50%)

Query:    10 VKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQ 69
             +K+ WD LK +L    P    +L++GA E D+  +E  +  KLP   R  YR  +GQ+  
Sbjct:    96 IKKAWDDLKKYLEPRCPRMVLSLKEGAREEDLDAVEAQIGCKLPDDYRCSYRIHNGQKLV 155

Query:    70 TDDFESIGAMGLIGGY 85
                   +G+M L   Y
Sbjct:   156 VPGL--LGSMALSNHY 169

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q9UK99 FBXO3 "F-box only protein 3" [Homo sapiens (taxid:9606)]

 Score = 110 (43.8 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
 Identities = 25/76 (32%), Positives = 38/76 (50%)

Query:    10 VKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQ 69
             +K+ WD LK +L    P    +L++GA E D+  +E  +  KLP   R  YR  +GQ+  
Sbjct:    96 IKKAWDDLKKYLEPRCPRMVLSLKEGAREEDLDAVEAQIGCKLPDDYRCSYRIHNGQKLV 155

Query:    70 TDDFESIGAMGLIGGY 85
                   +G+M L   Y
Sbjct:   156 VPGL--LGSMALSNHY 169

GO:0005634 "nucleus" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=TAS

GO:0006508 "proteolysis" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0016567 "protein ubiquitination" evidence=TAS

RGD|1593433 Fbxo3 "F-box protein 3" [Rattus norvegicus (taxid:10116)]

 Score = 110 (43.8 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
 Identities = 25/76 (32%), Positives = 38/76 (50%)

Query:    10 VKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQ 69
             +K+ WD LK +L    P    +L++GA E D+  +E  +  KLP   R  YR  +GQ+  
Sbjct:    96 IKKAWDDLKKYLEPRCPRMVLSLKEGAREEDLDAVEAQIGCKLPDDYRCSYRIHNGQKLV 155

Query:    70 TDDFESIGAMGLIGGY 85
                   +G+M L   Y
Sbjct:   156 VPGL--LGSMALSNHY 169

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-050522-269 fbxo3 "F-box protein 3" [Danio rerio (taxid:7955)]

 Score = 110 (43.8 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
 Identities = 25/76 (32%), Positives = 40/76 (52%)

Query:    10 VKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQ 69
             +K+ WD LKN+L +  P   A+L++G  E ++  +E  +  KLP   R  YR  +GQ+  
Sbjct:    92 LKKAWDDLKNFLNQKCPRMIASLKEGVREDELDTIEAQIGCKLPNDYRCSYRIHNGQKLV 151

Query:    70 TDDFESIGAMGLIGGY 85
                   +G+M L   Y
Sbjct:   152 VPGL--MGSMALSNHY 165

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1929084 Fbxo3 "F-box protein 3" [Mus musculus (taxid:10090)]

 Score = 102 (41.0 bits), Expect = 8.2e-07, Sum P(2) = 8.2e-07
 Identities = 24/76 (31%), Positives = 37/76 (48%)

Query:    10 VKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQ 69
             +K+ W  LK +L    P    +L++GA E D+  +E  +  KLP   R  YR  +GQ+  
Sbjct:    96 IKKAWRDLKKYLEPRCPRMVLSLKEGAREEDLDAVEAQIGCKLPDDYRCSYRIHNGQKLV 155

Query:    70 TDDFESIGAMGLIGGY 85
                   +G+M L   Y
Sbjct:   156 VPGL--LGSMALSNHY 169

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LND7	SKI16_ARATH	No assigned EC number	0.59	0.9363	0.6743	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	314
PRK05461	127	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Rev	6e-11
pfam04379	90	pfam04379, DUF525, Protein of unknown function (DU	2e-10
COG4282	191	COG4282, SMI1, Protein involved in beta-1,3-glucan	1e-09
COG2967	126	COG2967, ApaG, Uncharacterized protein affecting M	5e-07

>gnl|CDD|180098 PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed

 Score = 58.6 bits (143), Expect = 6e-11
 Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 11/79 (13%)

Query: 221 AVTNGVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHW 280
           AVT G+++     ++ E +DPE    +Y+FAY+I         + N       QL  RHW
Sbjct: 4   AVTYGIEVSVQPRYLEEQSDPEEG--RYVFAYTIT--------IENLGR-VPVQLLSRHW 52

Query: 281 IIHANNVVVSVVSGEAVIG 299
           +I   N  V  V GE V+G
Sbjct: 53  LITDANGRVQEVRGEGVVG 71

Length = 127

>gnl|CDD|202989 pfam04379, DUF525, Protein of unknown function (DUF525)

 Score = 56.3 bits (137), Expect = 2e-10
 Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 11/66 (16%)

Query: 235 IPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSG 294
           +PE + PE    +Y+FAY+I +  L            + QL  RHWII   N  V  V G
Sbjct: 1   LPEQSSPEEG--RYVFAYTITIENLGP---------ETVQLLSRHWIITDANGKVEEVRG 49

Query: 295 EAVIGM 300
           E V+G 
Sbjct: 50  EGVVGE 55

Members of this family include the bacterial protein ApaG and the C termini of some F-box proteins (pfam00646). F-box proteins contain a carboxyl-terminal domain that interacts with protein substrates, so this family may be involved in protein-protein interaction. The function of ApaG proteins is unknown, but mutations in the Salmonella typhimurium ApaG homologue corD gives a phenotype of low-level cobalt resistance and decreased magnesium efflux by effects on the CorA magnesium transport system. Length = 90

>gnl|CDD|226732 COG4282, SMI1, Protein involved in beta-1,3-glucan synthesis [Carbohydrate transport and metabolism]

 Score = 56.4 bits (136), Expect = 1e-09
 Identities = 22/63 (34%), Positives = 28/63 (44%)

Query: 5  PLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCD 64
          P        W R+  W+AE+ P+    LR GA+  DIQ+ E  L   LP   R      D
Sbjct: 2  PNQSEPSLAWRRIDTWVAEHHPDLLPFLRPGATCGDIQRAEADLGRTLPPDVRESLAIHD 61

Query: 65 GQE 67
          GQ 
Sbjct: 62 GQP 64

Length = 191

>gnl|CDD|225515 COG2967, ApaG, Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]

 Score = 47.7 bits (114), Expect = 5e-07
 Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 11/79 (13%)

Query: 221 AVTNGVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHW 280
           A +  ++++    ++ E + PE +  +Y+FAY++          I  +     QL  R+W
Sbjct: 3   ASSPDIEVQVQPRYLEEQSSPEEE--RYVFAYTVT---------IRNLGEVPVQLLSRYW 51

Query: 281 IIHANNVVVSVVSGEAVIG 299
           +I   N  V+ V GE V+G
Sbjct: 52  LITDGNGRVTEVEGEGVVG 70

Length = 126

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	314
KOG4408	386	consensus Putative Mg2+ and Co2+ transporter CorD	100.0
PRK05461	127	apaG CO2+/MG2+ efflux protein ApaG; Reviewed	99.95
COG2967	126	ApaG Uncharacterized protein affecting Mg2+/Co2+ t	99.93
COG4282	191	SMI1 Protein involved in beta-1,3-glucan synthesis	99.88
PF04379	90	DUF525: Protein of unknown function (DUF525); Inte	99.87
PF09346	130	SMI1_KNR4: SMI1 / KNR4 family (SUKH-1); InterPro:	98.78
smart00860	129	SMI1_KNR4 SMI1 / KNR4 family. Proteins in this fam	98.69
PF14568	120	SUKH_6: SMI1-KNR4 cell-wall; PDB: 2PRV_A.	98.25
PF14567	132	SUKH_5: SMI1-KNR4 cell-wall; PDB: 2PAG_A.	98.2
PF07348	176	Syd: Syd protein (SUKH-2); InterPro: IPR009948 Thi	91.35
PRK04968	181	SecY interacting protein Syd; Provisional	87.66

>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]

Probab=100.00  E-value=7.3e-46  Score=348.52  Aligned_cols=254  Identities=24%  Similarity=0.324  Sum_probs=212.7

Q ss_pred             CCCChhHHHHHHHHHH-HHHHHHhhChhhhhccCCCCCHHHHHHHHHHcCCCCCHHHHHHhhHhcCccCCCCCccccccc
Q 021297            1 MYPWPLVKRVKRCWDR-LKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAM   79 (314)
Q Consensus         1 ~~~~~~~~~v~~~W~r-ie~wl~~~~P~~~~~L~~gase~~i~~~E~~Lg~~LP~~~r~~yr~hnGq~~~~~~~~~~~~~   79 (314)
                      ||||.++.+|.-.|.. ++.|...|.++.-++|+.||+++|++++|+.+|++||.++|++||.+|||...        .+
T Consensus        75 h~~f~yvgvv~~~w~arlk~wd~ln~~~~~aal~ega~e~dl~a~e~s~~~kLp~~~r~~yrev~Gq~l~--------~y  146 (386)
T KOG4408|consen   75 HDTFGYVGVVLFPWAARLKDWDDLNKYLEPAALKEGAREPDLDAVEASIGCKLPDDYRCSYREVKGQTLT--------FY  146 (386)
T ss_pred             eeecccceEEEEechHhhhhhhhcccccccchhhccCcccchhhhhhcccccCCCccccchhhcCCeEEe--------eh
Confidence            6899999999999987 99999999999999999999999999999999999999999999999999997        78


Q ss_pred             ccccceeeccceeeeeccChhHHHHHHHHHHHhcCCCCCCceEEEEeccCCCCceEEEEecCCeeeeeeeeccCCCcccc
Q 021297           80 GLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIP  159 (314)
Q Consensus        80 GL~gg~~~y~~~~~~~LL~L~~i~~~~~~~r~~~~~~~~~~~~~v~~~~~~~~k~~~l~c~~g~~~vg~~~~~~~Ge~~p  159 (314)
                      |++|++..|+|++...+.       ++...  ..+++.+.++....++-.+..+...+.|+.++..-|      ..|..+
T Consensus       147 qvLi~~~d~sH~~~ev~~-------e~~t~--~~nf~~r~~L~y~ipgld~v~hedilpyts~e~~~g------~heLf~  211 (386)
T KOG4408|consen  147 QVLIDMRDCSHIRSEVQT-------EAVTF--LGNFDSRQGLKYAIPGLDYVSHEDILPYTSSEAVPG------QHELFD  211 (386)
T ss_pred             heeeecccCccccchhhh-------hhhhh--hcCcccccchheecccceeEeecccccccccccccc------chhhhh
Confidence            999999999999733332       22211  136665555532223222334567788888875432      246888


Q ss_pred             ccccceecccCCCCCccccchHHHHHHHHhhhhhcCcEEEecCCCceeeeecCCCCCceeEeeeCCeEEEEEeEEecCcC
Q 021297          160 CVPNALIALGHGCNSDQQQDGMLLWLEEHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTNGVKIRASAVFIPELA  239 (314)
Q Consensus       160 cvp~~~i~~~~~~~~~~~~dsfl~WLee~~~~Le~G~~~v~~~~~~r~i~lfp~~~p~~~~~~T~gI~V~v~~~y~~e~s  239 (314)
                      |+|+ +....++.+.+..++.|++|+|+  ++  .|.+.+++      |+          .++|+||+|+|+|+|+|+.|
T Consensus       212 ~~pd-l~r~~~~~~~f~~q~tl~~W~e~--kn--~gwl~~~d------Vh----------~etTenI~Vtvstfylge~s  270 (386)
T KOG4408|consen  212 QFPD-LARDPAAIPPFVIQDTLTAWQES--KN--HGWLPIRD------VH----------RETTENIRVTVSTFYLGERS  270 (386)
T ss_pred             hhhh-hhcCcccCCchhhhHHHHHHHhc--CC--CCCcChhh------CC----------hhhcCCeEEEEEEeeecccc
Confidence            9999 77777888889999999999998  55  88888883      43          38999999999999999999


Q ss_pred             CCCCCCCceEEEEEEEEEeCCCccccCCCccccEEEeeeeEEEEeCCCceEeeecCcccccceEE-----EEEE
Q 021297          240 DPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAVIGMVWLK-----LIVF  308 (314)
Q Consensus       240 ~~~~~~~~y~f~Y~Iri~n~~~~~~~~~~~~~~~QL~sRhW~I~~~~g~~~~V~G~GVVG~~P~l-----~~~y  308 (314)
                      ..  +++.|+|+|+|||+|        +.+..+|||.+|||+|++.+|.+++|+|+||||++|+|     .|+|
T Consensus       271 ~~--~pp~YwwrY~IRien--------~l~e~svQLreRhWrI~slng~le~V~G~gVVGk~PiLs~g~paFqY  334 (386)
T KOG4408|consen  271 SV--HPPVYWWRYCIRIEN--------ALPEKSVQLRERHWRIFSLNGTLETVRGRGVVGKEPILSAGRPAFQY  334 (386)
T ss_pred             cC--CCCceEEEEEEEeec--------CCCCcceEEeEeeEEEEecccchhhccccceeccccccCCCCcceEE
Confidence            99  499999999999998        33459999999999999999999999999999999999     6777

>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed

Probab=99.95  E-value=5.9e-28  Score=202.84  Aligned_cols=79  Identities=34%  Similarity=0.562  Sum_probs=75.4

Q ss_pred             eEeeeCCeEEEEEeEEecCcCCCCCCCCceEEEEEEEEEeCCCccccCCCccccEEEeeeeEEEEeCCCceEeeecCccc
Q 021297          219 SIAVTNGVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAVI  298 (314)
Q Consensus       219 ~~~~T~gI~V~v~~~y~~e~s~~~~~~~~y~f~Y~Iri~n~~~~~~~~~~~~~~~QL~sRhW~I~~~~g~~~~V~G~GVV  298 (314)
                      ++++|+||+|+|+|.|+||+|++.  +++|+|+|+|||+|       .++  .+|||++|||+|+|++|++++|+|+|||
T Consensus         2 ~~~~t~gI~V~V~~~y~~e~S~p~--~~~y~f~Y~ItI~N-------~~~--~~vQL~~R~W~I~d~~g~~~~V~G~GVV   70 (127)
T PRK05461          2 YSAVTYGIEVSVQPRYLEEQSDPE--EGRYVFAYTITIEN-------LGR--VPVQLLSRHWLITDANGRVQEVRGEGVV   70 (127)
T ss_pred             cccccCCEEEEEEEEECcccCCCc--CCEEEEEEEEEEEE-------CCC--CCEEEEeeeEEEEECCCCEEEEECCcee
Confidence            468999999999999999999995  99999999999999       777  9999999999999999999999999999


Q ss_pred             ccceEE----EEEE
Q 021297          299 GMVWLK----LIVF  308 (314)
Q Consensus       299 G~~P~l----~~~y  308 (314)
                      |+||+|    .|.|
T Consensus        71 G~qP~L~PGe~F~Y   84 (127)
T PRK05461         71 GEQPVLAPGESFEY   84 (127)
T ss_pred             cCCceECCCCCeEE
Confidence            999999    8888

>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]

Probab=99.93  E-value=2.1e-26  Score=188.11  Aligned_cols=78  Identities=29%  Similarity=0.525  Sum_probs=74.4

Q ss_pred             EeeeCCeEEEEEeEEecCcCCCCCCCCceEEEEEEEEEeCCCccccCCCccccEEEeeeeEEEEeCCCceEeeecCcccc
Q 021297          220 IAVTNGVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAVIG  299 (314)
Q Consensus       220 ~~~T~gI~V~v~~~y~~e~s~~~~~~~~y~f~Y~Iri~n~~~~~~~~~~~~~~~QL~sRhW~I~~~~g~~~~V~G~GVVG  299 (314)
                      .+.|..|+|+|.+.|++++|+|+  +.+|+|+|+|+|+|       +|.  .++||++|||.|||+||++++|.|+||||
T Consensus         2 ~~~~~~I~V~V~~~yleeQS~P~--~~RyvfaYtitI~N-------~g~--~~vqLlsR~W~ITd~~g~v~eV~G~GVVG   70 (126)
T COG2967           2 MASSPDIEVQVQPRYLEEQSSPE--EERYVFAYTVTIRN-------LGE--VPVQLLSRYWLITDGNGRVTEVEGEGVVG   70 (126)
T ss_pred             CcccCceEEEEeeEEccccCCcc--cceEEEEEEEEEec-------CCC--ccceeeeeEEEEecCCCcEEEEEcCceec
Confidence            46789999999999999999996  89999999999999       888  99999999999999999999999999999


Q ss_pred             cceEE----EEEE
Q 021297          300 MVWLK----LIVF  308 (314)
Q Consensus       300 ~~P~l----~~~y  308 (314)
                      +||+|    +|-|
T Consensus        71 eQP~l~PG~~y~Y   83 (126)
T COG2967          71 EQPLLAPGEEYQY   83 (126)
T ss_pred             cccccCCCCceEE
Confidence            99999    7777

>COG4282 SMI1 Protein involved in beta-1,3-glucan synthesis [Carbohydrate transport and metabolism]

Probab=99.88  E-value=6.5e-22  Score=170.66  Aligned_cols=174  Identities=21%  Similarity=0.253  Sum_probs=142.3

Q ss_pred             hhHHHHHHHHHHHHHHHHhhChhhhhccCCCCCHHHHHHHHHHcCCCCCHHHHHHhhHhcCccCCCCCcccccccccccc
Q 021297            5 PLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGG   84 (314)
Q Consensus         5 ~~~~~v~~~W~rie~wl~~~~P~~~~~L~~gase~~i~~~E~~Lg~~LP~~~r~~yr~hnGq~~~~~~~~~~~~~GL~gg   84 (314)
                      |.+..+..+|+||+.|.++|.|++...|+||||.++|+.+|++||++||+++|++|.+||||...+      ...|    
T Consensus         2 ~~~se~slawrrId~W~aeh~pdl~~~l~pgat~~di~~aE~dlg~tlPpdvResl~iHDGq~dgs------~ptg----   71 (191)
T COG4282           2 PNQSEPSLAWRRIDTWVAEHHPDLLPFLRPGATCGDIQRAEADLGRTLPPDVRESLAIHDGQPDGS------PPTG----   71 (191)
T ss_pred             CCCchHHHHHHHHHHHHHhcCcccccccCCCccHHHHHHHHHHhcCcCChHHHHHHHhhCCCcCCC------Cccc----
Confidence            456778899999999999999999999999999999999999999999999999999999999874      2223    


Q ss_pred             eeeccceeeeeccChhHHHHHHHHHHHhcC----CCCC----Cc-eEEEEeccCCCCceEEEEecCCeeeeeeeeccCC-
Q 021297           85 YSFYGHLVNVYLIPLSHIIMETKEIRRHLD----FPGR----DK-YVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSD-  154 (314)
Q Consensus        85 ~~~y~~~~~~~LL~L~~i~~~~~~~r~~~~----~~~~----~~-~~~v~~~~~~~~k~~~l~c~~g~~~vg~~~~~~~-  154 (314)
                                .||.|+++..+++-||+.+.    +.+.    .+ .--+.+..++++.|++|.-+.+++.++++.-|.. 
T Consensus        72 ----------~ll~le~~~~~~~aWrdlaq~~~T~~G~~s~~e~s~~sfppgvywhPaWIPL~~d~~Gnhi~IDLaPgp~  141 (191)
T COG4282          72 ----------LLLRLEPLDLELIAWRDLAQRDGTYGGEVSPSEGSGRSFPPGVYWHPAWIPLFGDPRGNHICIDLAPGPT  141 (191)
T ss_pred             ----------chhhhHHHHHHHHHHHHHHHhcCCcCCcccccccccccCCCCccccCceeeecccCCCCeEEEecCCCCC
Confidence                      68999999999999998754    2110    00 0112223345788999999999988888877644 


Q ss_pred             CccccccccceecccCCCC-CccccchHHHHHHHHhhhhhcCcEEEecCC
Q 021297          155 GEMIPCVPNALIALGHGCN-SDQQQDGMLLWLEEHGRRLHNGIIRLRDEE  203 (314)
Q Consensus       155 Ge~~pcvp~~~i~~~~~~~-~~~~~dsfl~WLee~~~~Le~G~~~v~~~~  203 (314)
                      |.     -+|+|-|++|.+ +...+-|+.++|...+..+++|+.-+.++.
T Consensus       142 g~-----ygQiI~FgrD~dtk~vVa~swaefls~~And~e~g~wllddd~  186 (191)
T COG4282         142 GG-----YGQIIWFGRDEDTKPVVAQSWAEFLSRIANDVETGRWLLDDDY  186 (191)
T ss_pred             CC-----cceEEEeccccccCeehhccHHHHHHHHHhHHhhcceecccCc
Confidence            33     579999999966 468999999999999999999997777664

>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO)

Probab=99.87  E-value=2.5e-22  Score=159.50  Aligned_cols=63  Identities=38%  Similarity=0.652  Sum_probs=53.2

Q ss_pred             ecCcCCCCCCCCceEEEEEEEEEeCCCccccCCCccccEEEeeeeEEEEeCCCceEeeecCcccccceEE----EEEE
Q 021297          235 IPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAVIGMVWLK----LIVF  308 (314)
Q Consensus       235 ~~e~s~~~~~~~~y~f~Y~Iri~n~~~~~~~~~~~~~~~QL~sRhW~I~~~~g~~~~V~G~GVVG~~P~l----~~~y  308 (314)
                      +||+|++.  +.+|+|+|+|||+|       .++  .+|||++|||+|+|++|++++|+|+||||++|+|    .|.|
T Consensus         1 ~~e~S~p~--~~~y~f~Y~I~I~N-------~~~--~~vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~Y   67 (90)
T PF04379_consen    1 VPEQSDPS--QNRYVFAYRIRIEN-------HSD--ESVQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFEY   67 (90)
T ss_dssp             -GGG-BGG--GTBEEEEEEEEEEE--------SS--S-EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEEE
T ss_pred             CccccCCC--CCeEEEEEEEEEEE-------CCC--CCEEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcEEE
Confidence            68999996  89999999999999       677  7999999999999999999999999999999999    7777

F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.

>PF09346 SMI1_KNR4: SMI1 / KNR4 family (SUKH-1); InterPro: IPR018958 Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation [, ]

Probab=98.78  E-value=5.6e-09  Score=84.59  Aligned_cols=34  Identities=29%  Similarity=0.395  Sum_probs=21.0

Q ss_pred             CCCHHHHHHHHHHcCCCCCHHHHHHhhHhcCccC
Q 021297           35 GASEADIQQLEKSLKVKLPVPTRILYRFCDGQEC   68 (314)
Q Consensus        35 gase~~i~~~E~~Lg~~LP~~~r~~yr~hnGq~~   68 (314)
                      |||+++|+++|++||++||++||+||+.|++...
T Consensus         1 p~t~~~I~~~E~~lg~~LP~~yk~fl~~~~~~~~   34 (130)
T PF09346_consen    1 PATEEEIQELEEKLGVRLPDDYKEFLKEHNNGGI   34 (130)
T ss_dssp             ---HHHHHHHHHHHTS---HHHHHHHH-------
T ss_pred             CCCHHHHHHHHHHhCCCCcHHHHHHHHhhccccc
Confidence            7999999999999999999999999998744444

Yeast members of this family are involved in the regulation of cell wall assembly. Saccharomyces cerevisiae (Baker's yeast) protein KNR4 (SMI1) has a regulatory role in chitin deposition and in cell wall assembly []. It was originally identified as a regulator of chitin synthase expression (acting as a repressor) [] and of 1,3-beta-glucan synthase levels []. It was shown to localise in patches at presumptive bud sites in unbudded cells and at the incipient bud site during bud emergence []. KNR4 is believed to connect the PKC1-SLT2 MAPK pathway with cell proliferation. It has been shown to interact with BCK2, a gene involved in cell cycle progression in S. cerevisiae (forming a complex) to allow PKC1 to coordinate the cell cycle (cell proliferation) with cell wall integrity [, ]. PKC1 plays an essential role in cell wall integrity and cell proliferation through a bifurcated PKC1/mitogen-activated protein (MAP) kinase pathway. KNR4 also interacts with the tyrosine-tRNA synthetase protein encoded by TYS1 and is involved in sporulation process []. Note: previously reported evidence that KNR4 may interact with nuclear matrix-association region [] may be due to an artefact [].; PDB: 3D5P_A 2ICG_A.

>smart00860 SMI1_KNR4 SMI1 / KNR4 family

Probab=98.69  E-value=7.8e-08  Score=76.00  Aligned_cols=35  Identities=37%  Similarity=0.490  Sum_probs=33.3

Q ss_pred             CCCHHHHHHHHHHcCCCCCHHHHHHhhHhcCccCC
Q 021297           35 GASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQ   69 (314)
Q Consensus        35 gase~~i~~~E~~Lg~~LP~~~r~~yr~hnGq~~~   69 (314)
                      |+|+++|+++|++||++||++||+||+.|||....
T Consensus         1 ~~s~~~i~~~e~~lg~~LP~~y~~f~~~~~g~~~~   35 (129)
T smart00860        1 PASEEEIAELEKKLGIKLPEDYKEFLLLHNGGELG   35 (129)
T ss_pred             CCCHHHHHHHHHHHCCCCCHHHHHHHHHcCCEEeC
Confidence            68999999999999999999999999999998775

Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation.

>PF14568 SUKH_6: SMI1-KNR4 cell-wall; PDB: 2PRV_A

Probab=98.25  E-value=5.3e-06  Score=67.07  Aligned_cols=31  Identities=32%  Similarity=0.438  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHhhHhcCccC
Q 021297           38 EADIQQLEKSLKVKLPVPTRILYRFCDGQEC   68 (314)
Q Consensus        38 e~~i~~~E~~Lg~~LP~~~r~~yr~hnGq~~   68 (314)
                      |++|+++|++||++||.+||.+++.+||-..
T Consensus         1 ee~I~~~E~~Lg~~lP~~Yk~fL~~~~gg~~   31 (120)
T PF14568_consen    1 EEEIEEAEKKLGVKLPEDYKEFLKEYNGGYF   31 (120)
T ss_dssp             -HHHHHHHHHHTS---HHHHHHHHHC-SEEE
T ss_pred             ChHHHHHHHHhCCCCCHHHHHHHHHcCCEEE
Confidence            6899999999999999999999999988764

>PF14567 SUKH_5: SMI1-KNR4 cell-wall; PDB: 2PAG_A

Probab=98.20  E-value=1.1e-05  Score=68.67  Aligned_cols=88  Identities=15%  Similarity=0.211  Sum_probs=47.7

Q ss_pred             CCCCHHHHHHHHHHcCCCCCHHHHHHhhHhcCccCCCCCcccccccccccceeeccceeeeeccChhHHHHHHHHHHHhc
Q 021297           34 KGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHL  113 (314)
Q Consensus        34 ~gase~~i~~~E~~Lg~~LP~~~r~~yr~hnGq~~~~~~~~~~~~~GL~gg~~~y~~~~~~~LL~L~~i~~~~~~~r~~~  113 (314)
                      .++++++|.++|++||++||++||++++..              +..++|+.+.+.-..  .--++. +.+.++..|+ .
T Consensus        20 ~lpd~e~I~~~Ee~L~i~lP~eyk~fL~~~--------------s~v~~G~~E~~~i~~--~~s~~~-l~e~~~~ar~-~   81 (132)
T PF14567_consen   20 ELPDDEQIVEAEEQLGISLPEEYKEFLLEA--------------SDVIYGGLEPVGIGD--PPSHTY-LPEVTADARS-I   81 (132)
T ss_dssp             ----HHHHHHHHHHHT----HHHHHHHHHH--------------TT--BTTB-B-BSS---TTSTTB-HHHHHHHHHH-H
T ss_pred             CCCCHHHHHHHHHHHCCCCCHHHHHHHHHC--------------CCeeecceEEEEEEc--CCCccc-HHHHHHHHHH-c
Confidence            468999999999999999999999999988              334455543322111  111111 5556666666 7


Q ss_pred             CCCCCCceEEEEeccCCCCceEEEEecCCeee
Q 021297          114 DFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLY  145 (314)
Q Consensus       114 ~~~~~~~~~~v~~~~~~~~k~~~l~c~~g~~~  145 (314)
                      +++  ..+++++..   ++.|++++ .+|++.
T Consensus        82 glP--~~~ipice~---~~~yYcl~-~~g~V~  107 (132)
T PF14567_consen   82 GLP--RELIPICED---GGDYYCLD-QEGEVV  107 (132)
T ss_dssp             T----TTSEEEEEE---TTEEEEE--TTS-EE
T ss_pred             CCC--hhheeEEec---CCcEEEEe-CCCeEE
Confidence            776  557777666   36778888 555543

>PF07348 Syd: Syd protein (SUKH-2); InterPro: IPR009948 This family contains a number of bacterial Syd proteins approximately 180 residues long

Probab=91.35  E-value=1.3  Score=39.65  Aligned_cols=27  Identities=22%  Similarity=0.412  Sum_probs=17.9

Q ss_pred             CHHHHHHHHHHcCCCCCHHHHHHhhHh
Q 021297           37 SEADIQQLEKSLKVKLPVPTRILYRFC   63 (314)
Q Consensus        37 se~~i~~~E~~Lg~~LP~~~r~~yr~h   63 (314)
                      ...++..+|+.|+++|.++++++|--+
T Consensus        55 ~~~~f~~vE~aLei~lh~~i~~fy~~~   81 (176)
T PF07348_consen   55 EAADFSNVERALEIQLHPDIHAFYGSY   81 (176)
T ss_dssp             S-SS-HHHHHHCT----HHHHHHCCSE
T ss_pred             CccCHHHHHHHhCCcccHHHHHHHhhh
Confidence            357899999999999999999999433

It has been suggested that Syd is loosely associated with the cytoplasmic surface of the cytoplasmic membrane, and that interaction with SecY may be involved in this membrane association [].; GO: 0009898 internal side of plasma membrane; PDB: 3FFV_B.

>PRK04968 SecY interacting protein Syd; Provisional

Probab=87.66  E-value=4.5  Score=36.31  Aligned_cols=27  Identities=19%  Similarity=0.388  Sum_probs=24.1

Q ss_pred             CHHHHHHHHHHcCCCCCHHHHHHhhHh
Q 021297           37 SEADIQQLEKSLKVKLPVPTRILYRFC   63 (314)
Q Consensus        37 se~~i~~~E~~Lg~~LP~~~r~~yr~h   63 (314)
                      .+.++..+|+.|+++|.++++++|--+
T Consensus        56 ~~~~f~~vE~aLei~lh~~I~~fy~s~   82 (181)
T PRK04968         56 PEGNFNNVERALEITLHPDIHAFYTTQ   82 (181)
T ss_pred             CcccHHHHHHhhcCeecHHHHHHHhhh
Confidence            567899999999999999999999554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	314
1tza_A	134	APAG protein, SOR45; structural genomics, PSI, pro	2e-14
1xq4_A	139	Protein APAG; all beta protein, structural genomic	6e-14
1xvs_A	126	Protein APAG; MCSG APC26324, midwest center for st	3e-13
2f1e_A	127	Protein APAG; APAG protein, xanthomonas axonopodis	3e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
2prv_A	153	Uncharacterized protein YOBK; structural genomics,	3e-04
2icg_A	160	LIN2918 protein; hypothetical protein, structural	5e-04

>1tza_A APAG protein, SOR45; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG, unknown function; 2.40A {Shewanella oneidensis} SCOP: b.1.23.1 Length = 134

 Score = 67.9 bits (166), Expect = 2e-14
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 11/80 (13%)

Query: 221 AVTNGVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHW 280
           A+ N +++     +I + + PE +  KYLF+Y+I +  L E          + +L+ RHW
Sbjct: 3   ALDNSIRVEVKTEYIEQQSSPEDE--KYLFSYTITIINLGE---------QAAKLETRHW 51

Query: 281 IIHANNVVVSVVSGEAVIGM 300
           II   N   S V G  V+G 
Sbjct: 52  IITDANGKTSEVQGAGVVGE 71

>1xq4_A Protein APAG; all beta protein, structural genomics, protein structure initiative, PSI, northeast structural genomics consortium, NESG; 2.70A {Bordetella pertussis} SCOP: b.1.23.1 Length = 139

 Score = 66.9 bits (163), Expect = 6e-14
 Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 11/82 (13%)

Query: 219 SIAVTNGVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRR 278
                  + +  +  ++PE +DP     +Y+FAY++R         I        Q+  R
Sbjct: 6   RPVKPYDLTVSVTPRYVPEQSDPSQQ--QYVFAYTVR---------ITNTGSHPAQVISR 54

Query: 279 HWIIHANNVVVSVVSGEAVIGM 300
           HWII      V  V G  V+G 
Sbjct: 55  HWIITDGEERVQEVRGLGVVGQ 76

>1xvs_A Protein APAG; MCSG APC26324, midwest center for structural genomics, structure initiative, PSI, structural genomics, unknown FUN; 2.01A {Vibrio cholerae} SCOP: b.1.23.1 Length = 126

 Score = 64.9 bits (158), Expect = 3e-13
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 11/79 (13%)

Query: 221 AVTNGVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHW 280
                +KI+    +I E ++PE    +++FAY I          I  ++  + QL  R W
Sbjct: 3   VSLPCIKIQVQTRYIEEQSNPEYQ--RFVFAYLIT---------IKNLSSQTVQLMSRRW 51

Query: 281 IIHANNVVVSVVSGEAVIG 299
           +I   +   +VV G+ V+G
Sbjct: 52  LITDADGKQTVVEGDGVVG 70

>2f1e_A Protein APAG; APAG protein, xanthomonas axonopodis PV.citri, structural genomics, unknown function; NMR {Xanthomonas axonopodis PV} Length = 127

 Score = 64.5 bits (157), Expect = 3e-13
 Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 11/79 (13%)

Query: 221 AVTNGVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHW 280
                V++  S  F+   + P+    +Y FAYSIR         I        +L  RHW
Sbjct: 4   DPRYRVEVEVSPRFLAHQSTPDEG--RYAFAYSIR---------IQNAGAVPARLVARHW 52

Query: 281 IIHANNVVVSVVSGEAVIG 299
            I   N     V GE V+G
Sbjct: 53  QITDGNGRTEQVDGEGVVG 71

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 2e-06
 Identities = 49/323 (15%), Positives = 97/323 (30%), Gaps = 67/323 (20%)

Query: 15  DRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDF- 73
           D  K+ L++   E    +    + +   +L  +L  K      ++ +F +        F 
Sbjct: 40  DMPKSILSKE--EIDHIIMSKDAVSGTLRLFWTLLSK---QEEMVQKFVEEVLRINYKFL 94

Query: 74  ------ESIGAMGLIGGYSFY-GHLVN-VYLIPLSHI--IMETKEIRRHLDFPGRDKYVV 123
                 E      +   Y      L N   +    ++  +    ++R+ L      K V+
Sbjct: 95  MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154

Query: 124 V-----------AFSSTYSEKFFFLNCTNGQLY---VGTKNLLSDGEMIPCVPNALIALG 169
           +           A     S K       + +++   +   N  S   ++      L  L 
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKV--QCKMDFKIFWLNLKNCN--SPETVL----EMLQKLL 206

Query: 170 H--GCNSDQQQDGM------LLWLEEHGRRL------HNGIIRLRDEENLKFINLFPEEP 215
           +    N   + D        +  ++   RRL       N ++ L + +N K  N F    
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS- 265

Query: 216 PLCSI-------AVTNGVK-IRASAVFIPELADPESDTE-KYLFAYSIRMSL--LP-EGC 263
             C I        VT+ +     + + +   +   +  E K L    +      LP E  
Sbjct: 266 --CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323

Query: 264 VINGMTFSSCQLQRRHWIIHANN 286
             N    S      R  +   +N
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDN 346

>2prv_A Uncharacterized protein YOBK; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.30A {Bacillus subtilis} SCOP: d.369.1.1 Length = 153

 Score = 39.6 bits (92), Expect = 3e-04
 Identities = 22/129 (17%), Positives = 47/129 (36%), Gaps = 26/129 (20%)

Query: 15  DRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFE 74
            +++N++ EN  +  A   +GAS  +I ++E++L+  LP   +                 
Sbjct: 5   SKVENFINEN--KQNAIFTEGASHENIGRIEENLQCDLPNSYKWFLEKYGA--------- 53

Query: 75  SIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFPGRDKYVVVAFSSTYSEKF 134
                G + G    G+  +      + ++  T E + H      D  VV+          
Sbjct: 54  -----GGLFGVLVLGYNFDH-----ASVVNRTNEYKEHYGLT--DGLVVIEDV---DYFA 98

Query: 135 FFLNCTNGQ 143
           + L+    +
Sbjct: 99  YCLDTNKMK 107

>2icg_A LIN2918 protein; hypothetical protein, structural genomics, PSI- protein structure initiative, joint center for structural G JCSG; 1.65A {Listeria innocua} SCOP: d.369.1.1 Length = 160

 Score = 39.3 bits (91), Expect = 5e-04
 Identities = 12/128 (9%), Positives = 36/128 (28%), Gaps = 21/128 (16%)

Query: 15  DRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFE 74
           + +   +  +            +   I+  + +L  + P   ++                
Sbjct: 8   EEVDRLITLS--GITFHASGTGTPELIKIYQDALGNEFPETYKLFLEKYGT--------- 56

Query: 75  SIGAMGLIGGYSFYGHL-VNVYLIPLSHIIMETKEIRRHLDFPGRDKYVVVAFSSTYSEK 133
                    G SFYG     +    +  +   T++ R   D     + ++    ++    
Sbjct: 57  -----LTFNGVSFYGISKRGLSAASIPDVKFATEQARTFGDIN--KEMIM--IKNSGYGS 107

Query: 134 FFFLNCTN 141
            F ++ + 
Sbjct: 108 IFSIDTSI 115

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	314
2f1e_A	127	Protein APAG; APAG protein, xanthomonas axonopodis	99.96
1xvs_A	126	Protein APAG; MCSG APC26324, midwest center for st	99.95
1tza_A	134	APAG protein, SOR45; structural genomics, PSI, pro	99.95
1xq4_A	139	Protein APAG; all beta protein, structural genomic	99.95
2icg_A	160	LIN2918 protein; hypothetical protein, structural	99.17
2prv_A	153	Uncharacterized protein YOBK; structural genomics,	99.08
3d5p_A	144	Putative glucan synthesis regulator of SMI1/KNR4;	98.9
2pag_A	135	Hypothetical protein; nysgx, target 10412I, novel	98.68
3ffv_A	181	Protein SYD; membrane, translocon, secyeg, nanodis	90.02

>2f1e_A Protein APAG; APAG protein, xanthomonas axonopodis PV.citri, structural genomics, unknown function; NMR {Xanthomonas axonopodis PV}

Probab=99.96  E-value=6.2e-29  Score=207.65  Aligned_cols=79  Identities=29%  Similarity=0.461  Sum_probs=72.7

Q ss_pred             eEeeeCCeEEEEEeEEecCcCCCCCCCCceEEEEEEEEEeCCCccccCCCccccEEEeeeeEEEEeCCCceEeeecCccc
Q 021297          219 SIAVTNGVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAVI  298 (314)
Q Consensus       219 ~~~~T~gI~V~v~~~y~~e~s~~~~~~~~y~f~Y~Iri~n~~~~~~~~~~~~~~~QL~sRhW~I~~~~g~~~~V~G~GVV  298 (314)
                      .+++|+||+|+|+|.|+|++|+|.  +.+|+|+|+|||+|       .++  .+|||++|||+|+|++|++++|+|+|||
T Consensus         2 ~~~~t~~I~V~V~~~y~~e~S~p~--~~~y~faY~I~I~N-------~~~--~~vQL~sRhW~Itd~~g~~~eV~G~GVV   70 (127)
T 2f1e_A            2 QDDPRYRVEVEVSPRFLAHQSTPD--EGRYAFAYSIRIQN-------AGA--VPARLVARHWQITDGNGRTEQVDGEGVV   70 (127)
T ss_dssp             ----CCCEEEEEEEEECSTTCBGG--GTBEEEEEEEEEEE-------CSS--SCEEEEEEEEEEEETTSCEEEEEESSBT
T ss_pred             ccceECCEEEEEEEEEchhhCCCc--CCEEEEEEEEEEEe-------CCC--CCEEEEeceEEEEeCCCCEEEEECCCee
Confidence            578999999999999999999995  99999999999999       778  9999999999999999999999999999


Q ss_pred             ccceEE----EEEE
Q 021297          299 GMVWLK----LIVF  308 (314)
Q Consensus       299 G~~P~l----~~~y  308 (314)
                      |+||+|    +|.|
T Consensus        71 G~qP~L~PGe~f~Y   84 (127)
T 2f1e_A           71 GEQPWLRPGEAFHY   84 (127)
T ss_dssp             TBCCEECTTCEEEE
T ss_pred             cCCCcCCCCCceEE
Confidence            999999    8888

>1xvs_A Protein APAG; MCSG APC26324, midwest center for structural genomics, structure initiative, PSI, structural genomics, unknown FUN; 2.01A {Vibrio cholerae} SCOP: b.1.23.1

Probab=99.95  E-value=2.1e-28  Score=204.13  Aligned_cols=78  Identities=26%  Similarity=0.425  Sum_probs=74.6

Q ss_pred             EeeeCCeEEEEEeEEecCcCCCCCCCCceEEEEEEEEEeCCCccccCCCccccEEEeeeeEEEEeCCCceEeeecCcccc
Q 021297          220 IAVTNGVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAVIG  299 (314)
Q Consensus       220 ~~~T~gI~V~v~~~y~~e~s~~~~~~~~y~f~Y~Iri~n~~~~~~~~~~~~~~~QL~sRhW~I~~~~g~~~~V~G~GVVG  299 (314)
                      .++|+||+|+|+|.|+|++|+|.  +.+|+|+|+|||+|       .++  .+|||++|||+|+|++|++++|+|+||||
T Consensus         2 ~~~t~~I~V~V~~~y~~e~S~p~--~~~y~faY~I~I~N-------~~~--~~vQL~sRhW~Itd~~g~~~eV~G~GVVG   70 (126)
T 1xvs_A            2 DVSLPCIKIQVQTRYIEEQSNPE--YQRFVFAYLITIKN-------LSS--QTVQLMSRRWLITDADGKQTVVEGDGVVG   70 (126)
T ss_dssp             BCSCCCEEEEEEEEECGGGCBGG--GTBEEEEEEEEEEE-------CSS--SCEEEEEEEEEEEETTCCEEEEEEESBTT
T ss_pred             CcccCCEEEEEEEEEchhcCCCc--CCEEEEEEEEEEEE-------CCC--CCEEEEecEEEEEeCCCCEEEEECCceEc
Confidence            46899999999999999999995  99999999999999       777  99999999999999999999999999999


Q ss_pred             cceEE----EEEE
Q 021297          300 MVWLK----LIVF  308 (314)
Q Consensus       300 ~~P~l----~~~y  308 (314)
                      +||+|    +|.|
T Consensus        71 ~qP~L~PGe~f~Y   83 (126)
T 1xvs_A           71 EQPRIKANDEYTY   83 (126)
T ss_dssp             BCCEECTTCEEEE
T ss_pred             CCCcCCCCCceEE
Confidence            99999    8888

>1tza_A APAG protein, SOR45; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG, unknown function; 2.40A {Shewanella oneidensis} SCOP: b.1.23.1

Probab=99.95  E-value=3.2e-28  Score=204.84  Aligned_cols=78  Identities=32%  Similarity=0.558  Sum_probs=74.0

Q ss_pred             EeeeCCeEEEEEeEEecCcCCCCCCCCceEEEEEEEEEeCCCccccCCCccccEEEeeeeEEEEeCCCceEeeecCcccc
Q 021297          220 IAVTNGVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAVIG  299 (314)
Q Consensus       220 ~~~T~gI~V~v~~~y~~e~s~~~~~~~~y~f~Y~Iri~n~~~~~~~~~~~~~~~QL~sRhW~I~~~~g~~~~V~G~GVVG  299 (314)
                      +++|+||+|+|+|.|+|++|+|.  +.+|+|+|+|||+|       .++  .+|||++|||+|+|++|++++|+|+||||
T Consensus         2 ~~~t~~I~V~V~~~y~~e~S~p~--~~~y~faY~ItI~N-------~~~--~~vQL~sRhW~Itd~~g~~~eV~G~GVVG   70 (134)
T 1tza_A            2 SALDNSIRVEVKTEYIEQQSSPE--DEKYLFSYTITIIN-------LGE--QAAKLETRHWIITDANGKTSEVQGAGVVG   70 (134)
T ss_dssp             -CGGGTEEEEEEEEEEEECCBTT--BCCEEEEEEEEEEE-------CSS--SCEEEEEEEEEEEETTSCEEEEEEESBTT
T ss_pred             CCccCCEEEEEEEEEchhhCCCC--CCEEEEEEEEEEEe-------CCC--CCEEEEecEEEEEeCCCCEEEEEcCceEc
Confidence            46799999999999999999995  99999999999999       777  99999999999999999999999999999


Q ss_pred             cceEE----EEEE
Q 021297          300 MVWLK----LIVF  308 (314)
Q Consensus       300 ~~P~l----~~~y  308 (314)
                      +||+|    +|.|
T Consensus        71 eqP~L~PGe~F~Y   83 (134)
T 1tza_A           71 ETPTIPPNTAYQY   83 (134)
T ss_dssp             BCCEECTTEEEEE
T ss_pred             CCCcCCCCCceEE
Confidence            99999    8888

>1xq4_A Protein APAG; all beta protein, structural genomics, protein structure initiative, PSI, northeast structural genomics consortium, NESG; 2.70A {Bordetella pertussis} SCOP: b.1.23.1

Probab=99.95  E-value=6.1e-28  Score=204.15  Aligned_cols=78  Identities=28%  Similarity=0.552  Sum_probs=74.6

Q ss_pred             EeeeCCeEEEEEeEEecCcCCCCCCCCceEEEEEEEEEeCCCccccCCCccccEEEeeeeEEEEeCCCceEeeecCcccc
Q 021297          220 IAVTNGVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAVIG  299 (314)
Q Consensus       220 ~~~T~gI~V~v~~~y~~e~s~~~~~~~~y~f~Y~Iri~n~~~~~~~~~~~~~~~QL~sRhW~I~~~~g~~~~V~G~GVVG  299 (314)
                      ..+|+||+|+|+|.|+|++|+|.  +.+|+|+|+|||+|       .++  .+|||++|||+|+|++|++++|+|+||||
T Consensus         7 ~~tT~gI~V~V~~~y~~e~S~p~--~~~y~FaY~ItI~N-------~~~--~~vQL~sRhW~ItD~~G~~~eV~G~GVVG   75 (139)
T 1xq4_A            7 PVKPYDLTVSVTPRYVPEQSDPS--QQQYVFAYTVRITN-------TGS--HPAQVISRHWIITDGEERVQEVRGLGVVG   75 (139)
T ss_dssp             CCCSSCEEEEEEEEECGGGCBGG--GTBEEEEEEEEEEE-------CSS--SCEEEEEEEEEEECTTSCEEEEEEESSSS
T ss_pred             ccccCCEEEEEEEEEchhhCCCC--CCEEEEEEEEEEEe-------CCC--CCEEEEecEEEEEeCCCCEEEEECCCeec
Confidence            56889999999999999999995  99999999999999       778  99999999999999999999999999999


Q ss_pred             cceEE----EEEE
Q 021297          300 MVWLK----LIVF  308 (314)
Q Consensus       300 ~~P~l----~~~y  308 (314)
                      +||+|    +|.|
T Consensus        76 eqPvL~PGe~F~Y   88 (139)
T 1xq4_A           76 QQPLLAPGETFEY   88 (139)
T ss_dssp             CCCEECTTCEEEE
T ss_pred             CCCcCCCCCceEE
Confidence            99999    8888

>2icg_A LIN2918 protein; hypothetical protein, structural genomics, PSI- protein structure initiative, joint center for structural G JCSG; 1.65A {Listeria innocua} SCOP: d.369.1.1

Probab=99.17  E-value=4e-10  Score=96.19  Aligned_cols=146  Identities=13%  Similarity=0.133  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHhhChhhhhccCCCCCHHHHHHHHHHcCCCCCHHHHHHhhHhcCccCCCCCcccccccccccceeeccce
Q 021297           12 RCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHL   91 (314)
Q Consensus        12 ~~W~rie~wl~~~~P~~~~~L~~gase~~i~~~E~~Lg~~LP~~~r~~yr~hnGq~~~~~~~~~~~~~GL~gg~~~y~~~   91 (314)
                      ..-++|++.+.++--.  ..+.+|+|+++|+++|++||++||++||++++.|||....              |..+|...
T Consensus         5 ~~~~~i~~~i~~~~~~--~~~~~~~s~~~I~~~E~~Lgi~lP~~Yk~fL~~~~gg~~~--------------g~~i~~i~   68 (160)
T 2icg_A            5 SFLEEVDRLITLSGIT--FHASGTGTPELIKIYQDALGNEFPETYKLFLEKYGTLTFN--------------GVSFYGIS   68 (160)
T ss_dssp             HHHHHHHHHHHHCCSC--CBCCCCCCHHHHHHHHHHHTCCCCHHHHHHHHHTSSEEET--------------TEEECBCC
T ss_pred             HHHHHHHHHHHHcccc--cccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHhCCcccC--------------ceeeeeec
Confidence            4557888888765432  3477899999999999999999999999999999886543              11122111


Q ss_pred             ee-eeccChhHHHHHHHHHHHhcCCCCCCceEEEEeccCCCCceEEEEecCCeeeeeeeeccCCCccccccccceecc--
Q 021297           92 VN-VYLIPLSHIIMETKEIRRHLDFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIAL--  168 (314)
Q Consensus        92 ~~-~~LL~L~~i~~~~~~~r~~~~~~~~~~~~~v~~~~~~~~k~~~l~c~~g~~~vg~~~~~~~Ge~~pcvp~~~i~~--  168 (314)
                      .. ....+...++..+..+|+..+++  +++++++.+..  +.+++++.+..+         .+|+   | +...+..  
T Consensus        69 ~~~~~~~~~~~i~~~~~~~~~~~~~p--~~~i~i~~~~~--G~~~~ld~~~~~---------~~~e---~-~V~~~d~~~  131 (160)
T 2icg_A           69 KRGLSAASIPDVKFATEQARTFGDIN--KEMIMIKNSGY--GSIFSIDTSIIG---------SEGE---P-VIVETNLSF  131 (160)
T ss_dssp             TTGGGCCSTTBHHHHHHHHHHHTSSC--TTEEEEEECST--TCEEEEEEEEEC---------TTSS---E-EEEEECTTH
T ss_pred             cCCcccCCCccchhhhHHHHHhcCCC--CCEEEEEecCC--CCEEEEEecccC---------CCCC---C-eEEEEECcc
Confidence            10 11123356777888898876666  66777776643  568888876221         1122   1 1222220  


Q ss_pred             cCCCCCccccchHHHHHHHHhh
Q 021297          169 GHGCNSDQQQDGMLLWLEEHGR  190 (314)
Q Consensus       169 ~~~~~~~~~~dsfl~WLee~~~  190 (314)
                      .|+......|+||.+||...+.
T Consensus       132 ~~~~~~~~ia~sF~efL~~l~~  153 (160)
T 2icg_A          132 KDNTEKKVVANSFGEFLLEEIE  153 (160)
T ss_dssp             HHHCCCEEEESSHHHHHHHHHH
T ss_pred             cCCCCcEEEeCCHHHHHHHHHH
Confidence            0111114689999999976554

>2prv_A Uncharacterized protein YOBK; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.30A {Bacillus subtilis} SCOP: d.369.1.1

Probab=99.08  E-value=1.3e-09  Score=92.55  Aligned_cols=135  Identities=21%  Similarity=0.307  Sum_probs=85.0

Q ss_pred             HHHHHHHHhhChhhhhccCCCCCHHHHHHHHHHcCCCCCHHHHHHhhHhcCccCCCCCcccccccccccceeeccceeee
Q 021297           15 DRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNV   94 (314)
Q Consensus        15 ~rie~wl~~~~P~~~~~L~~gase~~i~~~E~~Lg~~LP~~~r~~yr~hnGq~~~~~~~~~~~~~GL~gg~~~y~~~~~~   94 (314)
                      +.|++-+.+.- +. ....+|+|+++|+++|++||++||.+||++++.|||....              |..+|+.....
T Consensus         5 ~~i~~li~~~~-~~-~~~~~~~see~I~~~E~~Lgi~lP~dYk~fLk~~ngg~~~--------------~~~i~~i~~~~   68 (153)
T 2prv_A            5 SKVENFINENK-QN-AIFTEGASHENIGRIEENLQCDLPNSYKWFLEKYGAGGLF--------------GVLVLGYNFDH   68 (153)
T ss_dssp             HHHHHHHHHHG-GG-CEECCCCCHHHHHHHHHHHTSCCCHHHHHHHHHHCSEEET--------------TEEECCCCSSS
T ss_pred             HHHHHHHHHhh-hh-cccCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHhCCceec--------------eEEEEeccCCC
Confidence            34555554442 21 4577899999999999999999999999999999886542              22222222111


Q ss_pred             eccChhHHHHHHHHHHHhcCCCCCCceEEEEeccCCCCceEEEEecCCeeeeeeeeccCCCccccccccceecccCCCCC
Q 021297           95 YLIPLSHIIMETKEIRRHLDFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNS  174 (314)
Q Consensus        95 ~LL~L~~i~~~~~~~r~~~~~~~~~~~~~v~~~~~~~~k~~~l~c~~g~~~vg~~~~~~~Ge~~pcvp~~~i~~~~~~~~  174 (314)
                           ..++..+..+|+..+++  ++++++..+   ++.+++++.+..+          +++   | |..++... ....
T Consensus        69 -----~~i~~~~~~~~~~~~~p--~~~i~i~~~---g~~~~~ld~~~~~----------~~~---~-pv~~wd~~-~~~~  123 (153)
T 2prv_A           69 -----ASVVNRTNEYKEHYGLT--DGLVVIEDV---DYFAYCLDTNKMK----------DGE---C-PVVEWDRV-IGYQ  123 (153)
T ss_dssp             -----CHHHHHHHHHHHHSCCC--TTEEEEEEC---SSEEEEEETTSCB----------TTB---C-CEEEEETT-TEEE
T ss_pred             -----ccHHHHHHHHHHhcCCC--CcEEEEecC---CCcEEEEeccccC----------CCC---C-CEEEEEcc-CCce
Confidence                 46777788888876665  567777433   3567888876321          011   1 22222211 0011


Q ss_pred             ccccchHHHHHHHHhh
Q 021297          175 DQQQDGMLLWLEEHGR  190 (314)
Q Consensus       175 ~~~~dsfl~WLee~~~  190 (314)
                      ...|+||.+||...+.
T Consensus       124 ~~iA~sF~efL~~~i~  139 (153)
T 2prv_A          124 DTVADSFIEFFYNKIQ  139 (153)
T ss_dssp             EEEESSHHHHHHHHHH
T ss_pred             EEEcCCHHHHHHHHHH
Confidence            4689999999976654

>3d5p_A Putative glucan synthesis regulator of SMI1/KNR4; STR genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Bacteroides fragilis nctc 9343}

Probab=98.90  E-value=6.6e-09  Score=87.49  Aligned_cols=117  Identities=17%  Similarity=0.287  Sum_probs=75.2

Q ss_pred             ccCCCCCHHHHHHHHHHcCCCCCHHHHHHhhHhcCccCCCCCcccccccccccceeeccceeeeeccChhHHHHHHHHHH
Q 021297           31 TLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIR  110 (314)
Q Consensus        31 ~L~~gase~~i~~~E~~Lg~~LP~~~r~~yr~hnGq~~~~~~~~~~~~~GL~gg~~~y~~~~~~~LL~L~~i~~~~~~~r  110 (314)
                      .+.+|||+++|+++|++||++||++||++|+.|||.....            |+ .      -..+++++++++..+.++
T Consensus        10 ~~~~~~s~~~I~~~E~~lgi~lP~~Yk~fl~~~NGg~~~~------------~~-~------~~~l~~~~~i~e~n~~~~   70 (144)
T 3d5p_A           10 YKKDGASSASIDDVEKLLNTTLPKQYKSFLLWSNGGEGKL------------GD-N------YIYIWAIEDVIAYNHDYG   70 (144)
T ss_dssp             EECCCCCHHHHHHHHHHHTSCCCHHHHHHHHHCSSEEEEE------------TT-E------EEEECCHHHHHHHHHHHT
T ss_pred             ccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHhCCCcccC------------CC-c------eeEeeCHHHHHHHHHHhh
Confidence            5789999999999999999999999999999999986541            11 0      035678888887766664


Q ss_pred             HhcCCCCCCceEEEEeccCCCCceEEEEecCCeeeeeeeeccCCCccccccccceecccCCCCCccccchHHHHHHHH
Q 021297          111 RHLDFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQDGMLLWLEEH  188 (314)
Q Consensus       111 ~~~~~~~~~~~~~v~~~~~~~~k~~~l~c~~g~~~vg~~~~~~~Ge~~pcvp~~~i~~~~~~~~~~~~dsfl~WLee~  188 (314)
                      .....+  .++++++...   +..+.++-+++++|+.-    . |.+-   .         ......|+||.+||+..
T Consensus        71 ~~~~~p--~~~i~i~~D~---g~~~~~d~~~~~V~~~d----~-~~~~---~---------~~~~~iA~sF~eFL~~~  126 (144)
T 3d5p_A           71 IQKYLQ--KEYWAFGMDG---DIGYILHLSDNSIYRVD----L-GDLD---I---------TSIKYIAPSFDDFLGKA  126 (144)
T ss_dssp             HHHHSC--TTEEEEEEET---TEEEEEETTTCCEEEEE----T-TSCC---G---------GGCEEEESSHHHHHHHH
T ss_pred             hhhhcC--CCEEEEEEcC---CeEEEECCCCCEEEEEE----C-CCCC---h---------hhheeHhhCHHHHHHHH
Confidence            332233  3366666552   22334444345544311    1 1000   0         01245889999999754

>2pag_A Hypothetical protein; nysgx, target 10412I, novel fold, structural genomics, PSI-2 structure initiative; 1.60A {Pseudomonas syringae PV} SCOP: d.369.1.1

Probab=98.68  E-value=1.2e-07  Score=79.39  Aligned_cols=105  Identities=10%  Similarity=0.240  Sum_probs=65.7

Q ss_pred             cCCCCCHHHHHHHHHHcCCCCCHHHHHHhhHh-cCccCCCCCcccccccccccceeeccceeeeeccCh------hHHHH
Q 021297           32 LRKGASEADIQQLEKSLKVKLPVPTRILYRFC-DGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPL------SHIIM  104 (314)
Q Consensus        32 L~~gase~~i~~~E~~Lg~~LP~~~r~~yr~h-nGq~~~~~~~~~~~~~GL~gg~~~y~~~~~~~LL~L------~~i~~  104 (314)
                      ...++|+++|.++|++||++||+|||++++-+ ||               ++|+.         .++++      ..+..
T Consensus        18 ~~~~~t~e~I~~~E~~Lgi~fP~dYk~fl~~~~~~---------------~~g~~---------~~~~~~~~~~~~~i~~   73 (135)
T 2pag_A           18 PLELPDEDQLVEIEEQLFINIPFVFKEFLLTVSDV---------------VYGSL---------EPVTVTDPQSHTYLPE   73 (135)
T ss_dssp             CCCCCCHHHHHHHHHHHTCCCCHHHHHHHHHHTTC---------------CBTTB---------CBCBSSCTTSTTBHHH
T ss_pred             CCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCc---------------ccCcc---------eeeeeccCCcccchHH
Confidence            45667999999999999999999999999975 22               22321         11122      12555


Q ss_pred             HHHHHHHhcCCCCCCceEEEEeccCCCCceEEEEecCCeeeeeeeeccCCCccccccccceecccCCCC--CccccchHH
Q 021297          105 ETKEIRRHLDFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCN--SDQQQDGML  182 (314)
Q Consensus       105 ~~~~~r~~~~~~~~~~~~~v~~~~~~~~k~~~l~c~~g~~~vg~~~~~~~Ge~~pcvp~~~i~~~~~~~--~~~~~dsfl  182 (314)
                      .+...++. +++  +++++++ ..  ++++++++ .+|+++.                     ..|+..  ....++||.
T Consensus        74 ~~~~~~~~-~lp--~~~ipf~-~~--~Gn~iCid-~~g~Vv~---------------------wdhe~~~~~~~~~~s~~  125 (135)
T 2pag_A           74 VCATAWDL-GVP--RELIPIC-QD--GEDYYCVE-EDGTVLL---------------------WSAEEELVTEESWESVW  125 (135)
T ss_dssp             HHHHHHHH-TCC--TTSEEEE-EE--TTEEEEEC-TTSCEEE---------------------ECC---CEEEEEESSHH
T ss_pred             HHHHHHHc-CCC--CCeEEEE-EC--CCCEEEEC-CCCEEEE---------------------EEccCCccCCccCccHH
Confidence            55444442 454  5577776 32  47777777 4455442                     122212  346789999


Q ss_pred             HHHHHH
Q 021297          183 LWLEEH  188 (314)
Q Consensus       183 ~WLee~  188 (314)
                      .|++..
T Consensus       126 ~w~~~~  131 (135)
T 2pag_A          126 HWARDV  131 (135)
T ss_dssp             HHHHHT
T ss_pred             HHHHHH
Confidence            999764

>3ffv_A Protein SYD; membrane, translocon, secyeg, nanodisc, cell inner membrane, cell membrane, protein binding; 2.00A {Escherichia coli}

Probab=90.02  E-value=1.9  Score=37.37  Aligned_cols=110  Identities=14%  Similarity=0.270  Sum_probs=61.6

Q ss_pred             CHHHHHHHHHHcCCCCCHHHHHHhhHhcCccCCCCCcccccccccccceeeccceeeeeccCh---------hHHHHHHH
Q 021297           37 SEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPL---------SHIIMETK  107 (314)
Q Consensus        37 se~~i~~~E~~Lg~~LP~~~r~~yr~hnGq~~~~~~~~~~~~~GL~gg~~~y~~~~~~~LL~L---------~~i~~~~~  107 (314)
                      ...++..+|+.|+++|.++++++|--.    ...      .-.+-++|.       .+.||..         .+-+.+..
T Consensus        58 ~~~~f~~vE~aLei~lh~~i~~fy~~~----~ag------dm~a~~~~~-------~l~LlQvWs~~Df~rLQeNliGHl  120 (181)
T 3ffv_A           58 GEQNVNAVERAFDIVIQPTIHTFYTTQ----FAG------DMHAQFGDI-------KLTLLQTWSEDDFRRVQENLIGHL  120 (181)
T ss_dssp             SCSSCHHHHHHSSCCCCHHHHHHTSSE----ECC------CEEEEETTE-------EEEECCCCSHHHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHhcCcccHHHHHHHhhh----hcC------CCcceeCCc-------eeEEEecCCHHHHHHHHHHHHHHH
Confidence            345899999999999999999999433    210      124556653       2566653         33344444


Q ss_pred             HHHHhcCCCCCCceEEEEeccCCCCceEEEEecCCeeeeeeeeccCCCccccccccceecccCCCCCccccchHHHHHHH
Q 021297          108 EIRRHLDFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQDGMLLWLEE  187 (314)
Q Consensus       108 ~~r~~~~~~~~~~~~~v~~~~~~~~k~~~l~c~~g~~~vg~~~~~~~Ge~~pcvp~~~i~~~~~~~~~~~~dsfl~WLee  187 (314)
                      ..++.++.+  +             -+|...+++....|-.+|.  .|+++      +-.++.+ .+...|+|+.+||++
T Consensus       121 ~mqrrLK~~--P-------------T~FIg~td~e~~lIsv~N~--sGeV~------LE~~G~~-~~~vLA~sLaeFL~~  176 (181)
T 3ffv_A          121 VTQKRLKLP--P-------------TLFIATLEEELEVISVCNL--SGEVC------KETLGTR-KRTHLASNLAEFLNQ  176 (181)
T ss_dssp             HHHHHTTCC--C-------------EEEEEECSSTTEEEEEETT--TCCEE------EEETTSS-CEEEEESSHHHHHHH
T ss_pred             HHHHHhCCC--C-------------cEEEEEecCCCcEEEEECC--CCeEE------EEeCCCC-cceehhhCHHHHHHh
Confidence            455556554  1             1222223333334433333  34422      2223332 456789999999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	314
d1tzaa_	132	b.1.23.1 (A:) ApaG {Shewanella oneidensis [TaxId:	1e-16
d1xvsa_	124	b.1.23.1 (A:) ApaG {Vibrio cholerae [TaxId: 666]}	4e-14
d1xq4a_	123	b.1.23.1 (A:) ApaG {Bordetella pertussis [TaxId: 5	1e-12
d2prva1	152	d.369.1.1 (A:1-152) Uncharacterized protein YobK {	2e-10
d2icga1	158	d.369.1.1 (A:1-158) Uncharacterized protein Lin291	0.001

>d1tzaa_ b.1.23.1 (A:) ApaG {Shewanella oneidensis [TaxId: 70863]} Length = 132

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: ApaG-like
family: ApaG-like
domain: ApaG
species: Shewanella oneidensis [TaxId: 70863]

 Score = 72.9 bits (179), Expect = 1e-16
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 11/79 (13%)

Query: 221 AVTNGVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHW 280
           A+ N +++     +I + + PE +  KYLF+Y+I +  L E          + +L+ RHW
Sbjct: 1   ALDNSIRVEVKTEYIEQQSSPEDE--KYLFSYTITIINLGE---------QAAKLETRHW 49

Query: 281 IIHANNVVVSVVSGEAVIG 299
           II   N   S V G  V+G
Sbjct: 50  IITDANGKTSEVQGAGVVG 68

>d1xvsa_ b.1.23.1 (A:) ApaG {Vibrio cholerae [TaxId: 666]} Length = 124

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: ApaG-like
family: ApaG-like
domain: ApaG
species: Vibrio cholerae [TaxId: 666]

 Score = 65.6 bits (160), Expect = 4e-14
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 11/79 (13%)

Query: 221 AVTNGVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHW 280
                +KI+    +I E ++PE    +++FAY I          I  ++  + QL  R W
Sbjct: 3   VSLPCIKIQVQTRYIEEQSNPEYQ--RFVFAYLIT---------IKNLSSQTVQLMSRRW 51

Query: 281 IIHANNVVVSVVSGEAVIG 299
           +I   +   +VV G+ V+G
Sbjct: 52  LITDADGKQTVVEGDGVVG 70

>d1xq4a_ b.1.23.1 (A:) ApaG {Bordetella pertussis [TaxId: 520]} Length = 123

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: ApaG-like
family: ApaG-like
domain: ApaG
species: Bordetella pertussis [TaxId: 520]

 Score = 61.3 bits (149), Expect = 1e-12
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 11/74 (14%)

Query: 226 VKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHAN 285
           + +  +  ++PE +DP     +Y+FAY++R         I        Q+  RHWII   
Sbjct: 7   LTVSVTPRYVPEQSDPSQQ--QYVFAYTVR---------ITNTGSHPAQVISRHWIITDG 55

Query: 286 NVVVSVVSGEAVIG 299
              V  V G  V+G
Sbjct: 56  EERVQEVRGLGVVG 69

>d2prva1 d.369.1.1 (A:1-152) Uncharacterized protein YobK {Bacillus subtilis [TaxId: 1423]} Length = 152

class: Alpha and beta proteins (a+b)
fold: SMI1/KNR4-like
superfamily: SMI1/KNR4-like
family: SMI1/KNR4-like
domain: Uncharacterized protein YobK
species: Bacillus subtilis [TaxId: 1423]

 Score = 56.2 bits (135), Expect = 2e-10
 Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 21/104 (20%)

Query: 14  WDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDF 73
           + +++N++ EN   A     +GAS  +I ++E++L+  LP   +                
Sbjct: 3   YSKVENFINENKQNA--IFTEGASHENIGRIEENLQCDLPNSYKWFLEKYGA-------- 52

Query: 74  ESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFPG 117
                 G + G    G+         + ++  T E + H     
Sbjct: 53  ------GGLFGVLVLGY-----NFDHASVVNRTNEYKEHYGLTD 85

>d2icga1 d.369.1.1 (A:1-158) Uncharacterized protein Lin2918 {Listeria innocua [TaxId: 1642]} Length = 158

class: Alpha and beta proteins (a+b)
fold: SMI1/KNR4-like
superfamily: SMI1/KNR4-like
family: SMI1/KNR4-like
domain: Uncharacterized protein Lin2918
species: Listeria innocua [TaxId: 1642]

 Score = 37.0 bits (85), Expect = 0.001
 Identities = 11/100 (11%), Positives = 26/100 (26%), Gaps = 15/100 (15%)

Query: 28  AKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSF 87
                    +   I+  + +L  + P   ++              F  I   GL      
Sbjct: 18  ITFHASGTGTPELIKIYQDALGNEFPETYKLFLEKYGTLTFNGVSFYGISKRGL------ 71

Query: 88  YGHLVNVYLIPLSHIIMETKEIRRHLDFPGRDKYVVVAFS 127
                      +  +   T++ R   D     + +++  S
Sbjct: 72  -------SAASIPDVKFATEQARTFGDIN--KEMIMIKNS 102

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	314
d1tzaa_	132	ApaG {Shewanella oneidensis [TaxId: 70863]}	99.94
d1xvsa_	124	ApaG {Vibrio cholerae [TaxId: 666]}	99.94
d1xq4a_	123	ApaG {Bordetella pertussis [TaxId: 520]}	99.93
d2prva1	152	Uncharacterized protein YobK {Bacillus subtilis [T	99.65
d2icga1	158	Uncharacterized protein Lin2918 {Listeria innocua	99.35
d2paga1	135	Hypothetical protein PSPTO5518 {Pseudomonas syring	98.6

>d1tzaa_ b.1.23.1 (A:) ApaG {Shewanella oneidensis [TaxId: 70863]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: ApaG-like
family: ApaG-like
domain: ApaG
species: Shewanella oneidensis [TaxId: 70863]

Probab=99.94  E-value=8.5e-28  Score=199.74  Aligned_cols=77  Identities=32%  Similarity=0.573  Sum_probs=74.1

Q ss_pred             eeeCCeEEEEEeEEecCcCCCCCCCCceEEEEEEEEEeCCCccccCCCccccEEEeeeeEEEEeCCCceEeeecCccccc
Q 021297          221 AVTNGVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAVIGM  300 (314)
Q Consensus       221 ~~T~gI~V~v~~~y~~e~s~~~~~~~~y~f~Y~Iri~n~~~~~~~~~~~~~~~QL~sRhW~I~~~~g~~~~V~G~GVVG~  300 (314)
                      |+|+||+|+|+|.|+|++|++.  +.+|+|+|+|||+|       .++  .+|||++|||+|+|++|++++|+|+||||+
T Consensus         1 a~t~gI~V~V~t~y~~e~S~p~--~~~y~F~Y~ItI~N-------~~~--~~vQLlsR~W~I~d~~G~~~eV~G~GVVG~   69 (132)
T d1tzaa_           1 ALDNSIRVEVKTEYIEQQSSPE--DEKYLFSYTITIIN-------LGE--QAAKLETRHWIITDANGKTSEVQGAGVVGE   69 (132)
T ss_dssp             CGGGTEEEEEEEEEEEECCBTT--BCCEEEEEEEEEEE-------CSS--SCEEEEEEEEEEEETTSCEEEEEEESBTTB
T ss_pred             CccCCEEEEEEEEEchhcCCCC--CCeEEEEEEEEEEe-------CCC--CCEEEEeeEEEEECCCCCEEEEeCCCccCC
Confidence            6899999999999999999996  89999999999999       778  999999999999999999999999999999


Q ss_pred             ceEE----EEEE
Q 021297          301 VWLK----LIVF  308 (314)
Q Consensus       301 ~P~l----~~~y  308 (314)
                      ||+|    +|.|
T Consensus        70 qPvl~PGe~f~Y   81 (132)
T d1tzaa_          70 TPTIPPNTAYQY   81 (132)
T ss_dssp             CCEECTTEEEEE
T ss_pred             cCccCCCCCEEE
Confidence            9999    8888

>d1xvsa_ b.1.23.1 (A:) ApaG {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: ApaG-like
family: ApaG-like
domain: ApaG
species: Vibrio cholerae [TaxId: 666]

Probab=99.94  E-value=5.5e-27  Score=193.09  Aligned_cols=78  Identities=26%  Similarity=0.425  Sum_probs=74.6

Q ss_pred             EeeeCCeEEEEEeEEecCcCCCCCCCCceEEEEEEEEEeCCCccccCCCccccEEEeeeeEEEEeCCCceEeeecCcccc
Q 021297          220 IAVTNGVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAVIG  299 (314)
Q Consensus       220 ~~~T~gI~V~v~~~y~~e~s~~~~~~~~y~f~Y~Iri~n~~~~~~~~~~~~~~~QL~sRhW~I~~~~g~~~~V~G~GVVG  299 (314)
                      +++|.||+|+|+|.|+||+|++.  +.+|+|+|+|+|+|       .++  .+|||++|||+|+|++|++++|+|+||||
T Consensus         2 d~~~~~I~V~V~~~y~~e~S~p~--~~~y~f~Y~I~I~N-------~~~--~~vQLlsR~W~I~d~~g~~~~V~G~GVVG   70 (124)
T d1xvsa_           2 DVSLPCIKIQVQTRYIEEQSNPE--YQRFVFAYLITIKN-------LSS--QTVQLMSRRWLITDADGKQTVVEGDGVVG   70 (124)
T ss_dssp             BCSCCCEEEEEEEEECGGGCBGG--GTBEEEEEEEEEEE-------CSS--SCEEEEEEEEEEEETTCCEEEEEEESBTT
T ss_pred             CcccCCEEEEEEEEEchhhCCCC--CCEEEEEEEEEEEe-------CCC--CCEEEEeeEEEEEeCCCCEEEeccCcccC
Confidence            46899999999999999999995  89999999999999       778  99999999999999999999999999999


Q ss_pred             cceEE----EEEE
Q 021297          300 MVWLK----LIVF  308 (314)
Q Consensus       300 ~~P~l----~~~y  308 (314)
                      +||+|    +|.|
T Consensus        71 ~qPvl~PGe~f~Y   83 (124)
T d1xvsa_          71 EQPRIKANDEYTY   83 (124)
T ss_dssp             BCCEECTTCEEEE
T ss_pred             CCCCcCCCCCEEE
Confidence            99999    8888

>d1xq4a_ b.1.23.1 (A:) ApaG {Bordetella pertussis [TaxId: 520]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: ApaG-like
family: ApaG-like
domain: ApaG
species: Bordetella pertussis [TaxId: 520]

Probab=99.93  E-value=3.4e-26  Score=188.08  Aligned_cols=76  Identities=29%  Similarity=0.578  Sum_probs=72.4

Q ss_pred             eeCCeEEEEEeEEecCcCCCCCCCCceEEEEEEEEEeCCCccccCCCccccEEEeeeeEEEEeCCCceEeeecCcccccc
Q 021297          222 VTNGVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAVIGMV  301 (314)
Q Consensus       222 ~T~gI~V~v~~~y~~e~s~~~~~~~~y~f~Y~Iri~n~~~~~~~~~~~~~~~QL~sRhW~I~~~~g~~~~V~G~GVVG~~  301 (314)
                      .+..|+|+|+|.|+|++|++.  +.+|+|+|+|||+|       +++  .+|||++|||+|+|++|.+++|+|+||||+|
T Consensus         3 ~~~~I~V~V~~~y~~e~S~~~--~~~y~F~Y~I~I~N-------~~~--~~vQL~sR~W~I~d~~g~~~eV~G~GVVG~q   71 (123)
T d1xq4a_           3 KPYDLTVSVTPRYVPEQSDPS--QQQYVFAYTVRITN-------TGS--HPAQVISRHWIITDGEERVQEVRGLGVVGQQ   71 (123)
T ss_dssp             CSSCEEEEEEEEECGGGCBGG--GTBEEEEEEEEEEE-------CSS--SCEEEEEEEEEEECTTSCEEEEEEESSSSCC
T ss_pred             CCCcEEEEEEEEEchhcCCCC--CCeEEEEEEEEEEE-------CCC--CcEEEEeeeEEEEeCCCCEEEccCCCEeCCc
Confidence            367899999999999999996  89999999999999       778  9999999999999999999999999999999


Q ss_pred             eEE----EEEE
Q 021297          302 WLK----LIVF  308 (314)
Q Consensus       302 P~l----~~~y  308 (314)
                      |+|    +|.|
T Consensus        72 Pvl~PGe~f~Y   82 (123)
T d1xq4a_          72 PLLAPGETFEY   82 (123)
T ss_dssp             CEECTTCEEEE
T ss_pred             ccCCCCCCEEE
Confidence            999    8888

>d2prva1 d.369.1.1 (A:1-152) Uncharacterized protein YobK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: SMI1/KNR4-like
superfamily: SMI1/KNR4-like
family: SMI1/KNR4-like
domain: Uncharacterized protein YobK
species: Bacillus subtilis [TaxId: 1423]

Probab=99.65  E-value=6.8e-16  Score=128.90  Aligned_cols=139  Identities=19%  Similarity=0.316  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHhhChhhhhccCCCCCHHHHHHHHHHcCCCCCHHHHHHhhHhcCccCCCCCcccccccccccceeecccee
Q 021297           13 CWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHLV   92 (314)
Q Consensus        13 ~W~rie~wl~~~~P~~~~~L~~gase~~i~~~E~~Lg~~LP~~~r~~yr~hnGq~~~~~~~~~~~~~GL~gg~~~y~~~~   92 (314)
                      +|+|||+|+.+|.|...  |++|||+++|+++|++||++||++||++|+.|||....              |..+|.   
T Consensus         2 ~~~~i~~~i~~~~~~~~--~~~gas~e~I~~~E~~Lg~~LP~~Yk~fL~~~ng~~~~--------------~~~~~~---   62 (152)
T d2prva1           2 IYSKVENFINENKQNAI--FTEGASHENIGRIEENLQCDLPNSYKWFLEKYGAGGLF--------------GVLVLG---   62 (152)
T ss_dssp             HHHHHHHHHHHHGGGCE--ECCCCCHHHHHHHHHHHTSCCCHHHHHHHHHHCSEEET--------------TEEECC---
T ss_pred             hHHHHHHHHHHcccccc--cCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHcCCcccc--------------CceEee---
Confidence            69999999999999777  99999999999999999999999999999999986543              222222   


Q ss_pred             eeeccChhHHHHHHHHHHHhcCCCCCCceEEEEeccCCCCceEEEEecCCeeeeeeeeccCCCccccccccceecccCCC
Q 021297           93 NVYLIPLSHIIMETKEIRRHLDFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGC  172 (314)
Q Consensus        93 ~~~LL~L~~i~~~~~~~r~~~~~~~~~~~~~v~~~~~~~~k~~~l~c~~g~~~vg~~~~~~~Ge~~pcvp~~~i~~~~~~  172 (314)
                        ...+...++..+..+++...++  ..++++...   .+.+++++.+++.          .|+      .+++...|+.
T Consensus        63 --~~~~~~~~i~~~~~~~~~~~~p--~~~i~~~~~---gg~~~~~d~~~~~----------~~~------~~V~~~~~~~  119 (152)
T d2prva1          63 --YNFDHASVVNRTNEYKEHYGLT--DGLVVIEDV---DYFAYCLDTNKMK----------DGE------CPVVEWDRVI  119 (152)
T ss_dssp             --CCSSSCHHHHHHHHHHHHSCCC--TTEEEEEEC---SSEEEEEETTSCB----------TTB------CCEEEEETTT
T ss_pred             --ccccchHHHHhhHHHHHhccCC--CceEEEEcC---CCCEEEEEeccCC----------CCC------CCeEEEecCC
Confidence              1234456777788888877776  556666443   3667777776654          122      1333333332


Q ss_pred             -CCccccchHHHHHHHHhhhhh
Q 021297          173 -NSDQQQDGMLLWLEEHGRRLH  193 (314)
Q Consensus       173 -~~~~~~dsfl~WLee~~~~Le  193 (314)
                       .....|+||.+||+..++.++
T Consensus       120 ~~~~~iA~SF~efL~~~~~~~~  141 (152)
T d2prva1         120 GYQDTVADSFIEFFYNKIQEAK  141 (152)
T ss_dssp             EEEEEEESSHHHHHHHHHHHHH
T ss_pred             CeEEEhhcCHHHHHHHHHHHhh
Confidence             235789999999999888655

>d2icga1 d.369.1.1 (A:1-158) Uncharacterized protein Lin2918 {Listeria innocua [TaxId: 1642]}

class: Alpha and beta proteins (a+b)
fold: SMI1/KNR4-like
superfamily: SMI1/KNR4-like
family: SMI1/KNR4-like
domain: Uncharacterized protein Lin2918
species: Listeria innocua [TaxId: 1642]

Probab=99.35  E-value=2.9e-12  Score=107.20  Aligned_cols=146  Identities=11%  Similarity=0.114  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHhhChhhhhccCCCCCHHHHHHHHHHcCCCCCHHHHHHhhHhcCccCCCCCcccccccccccceeeccce
Q 021297           12 RCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHL   91 (314)
Q Consensus        12 ~~W~rie~wl~~~~P~~~~~L~~gase~~i~~~E~~Lg~~LP~~~r~~yr~hnGq~~~~~~~~~~~~~GL~gg~~~y~~~   91 (314)
                      ..-++|++.+.++....+  .++|||+++|+++|++||++||++||.+++.|||+.......     .|+...       
T Consensus         4 ~~~e~~~~~~~~~~~~~~--~~~~at~E~I~~~E~~LG~~lP~~Yr~fL~~~ng~~~~~~~i-----~~i~~~-------   69 (158)
T d2icga1           4 SFLEEVDRLITLSGITFH--ASGTGTPELIKIYQDALGNEFPETYKLFLEKYGTLTFNGVSF-----YGISKR-------   69 (158)
T ss_dssp             HHHHHHHHHHHHCCSCCB--CCCCCCHHHHHHHHHHHTCCCCHHHHHHHHHTSSEEETTEEE-----CBCCTT-------
T ss_pred             HHHHHHHHHHHhcCCccc--cCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHcCCcccCCcee-----eccccc-------
Confidence            456888999999988776  889999999999999999999999999999999987542110     111110       


Q ss_pred             eeeeccChhHHHHHHHHHHHhcCCCCCCceEEEEeccCCCCceEEEEecCCeeeeeeeeccCCCccccccccceeccc--
Q 021297           92 VNVYLIPLSHIIMETKEIRRHLDFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALG--  169 (314)
Q Consensus        92 ~~~~LL~L~~i~~~~~~~r~~~~~~~~~~~~~v~~~~~~~~k~~~l~c~~g~~~vg~~~~~~~Ge~~pcvp~~~i~~~--  169 (314)
                       .....+...++..++.+++....+  +++++++....  ++++++|.++..         .+++     |..++...  
T Consensus        70 -~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~i~~~~~--G~~~c~D~~~~~---------~~~e-----~~v~~~~~~~  130 (158)
T d2icga1          70 -GLSAASIPDVKFATEQARTFGDIN--KEMIMIKNSGY--GSIFSIDTSIIG---------SEGE-----PVIVETNLSF  130 (158)
T ss_dssp             -GGGCCSTTBHHHHHHHHHHHTSSC--TTEEEEEECST--TCEEEEEEEEEC---------TTSS-----EEEEEECTTH
T ss_pred             -cccccccchHHHHHHHHHhccCCC--cCEEEEEEcCC--CCEEEEeecccc---------cCCC-----CeEEEEeccc
Confidence             123344566777888898876665  56777766643  677888775543         2222     21121111  


Q ss_pred             CC-CCCccccchHHHHHHHHhh
Q 021297          170 HG-CNSDQQQDGMLLWLEEHGR  190 (314)
Q Consensus       170 ~~-~~~~~~~dsfl~WLee~~~  190 (314)
                      ++ -.....|+||.+||.+.++
T Consensus       131 ~~~~~~~~iA~sF~efl~~~~~  152 (158)
T d2icga1         131 KDNTEKKVVANSFGEFLLEEIE  152 (158)
T ss_dssp             HHHCCCEEEESSHHHHHHHHHH
T ss_pred             CCCcceeehhhCHHHHHHHHHH
Confidence            11 1234579999999977654

>d2paga1 d.369.1.1 (A:1-135) Hypothetical protein PSPTO5518 {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a+b)
fold: SMI1/KNR4-like
superfamily: SMI1/KNR4-like
family: SMI1/KNR4-like
domain: Hypothetical protein PSPTO5518
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=98.60  E-value=2.5e-07  Score=75.66  Aligned_cols=108  Identities=8%  Similarity=0.164  Sum_probs=67.9

Q ss_pred             CCCHHHHHHHHHHcCCCCCHHHHHHhhHhcCccCCCCCcccccccccccceeeccceeeeeccChhHHHHHHHHHHHhcC
Q 021297           35 GASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLD  114 (314)
Q Consensus        35 gase~~i~~~E~~Lg~~LP~~~r~~yr~hnGq~~~~~~~~~~~~~GL~gg~~~y~~~~~~~LL~L~~i~~~~~~~r~~~~  114 (314)
                      +||+++|+++|++||++||++||++++..+|....        ...+++.         ..-.+...+.+.+..+++ .+
T Consensus        21 ~pt~e~I~~~E~~lg~~~P~~yk~fl~~~g~~~~g--------~~e~~~~---------~d~~s~~~l~e~~~~~~~-~g   82 (135)
T d2paga1          21 LPDEDQLVEIEEQLFINIPFVFKEFLLTVSDVVYG--------SLEPVTV---------TDPQSHTYLPEVCATAWD-LG   82 (135)
T ss_dssp             CCCHHHHHHHHHHHTCCCCHHHHHHHHHHTTCCBT--------TBCBCBS---------SCTTSTTBHHHHHHHHHH-HT
T ss_pred             CCCHHHHHHHHHHHCCCCCHHHHHHHHHhCCeeec--------eEEEeec---------CCCCccccHHHHHHHHHh-hC
Confidence            45999999999999999999999999998655432        1122221         122344455666666665 46


Q ss_pred             CCCCCceEEEEeccCCCCceEEEEecCCeeeeeeeeccCCCccccccccceecccCCC--CCccccchHHHHHHH
Q 021297          115 FPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGC--NSDQQQDGMLLWLEE  187 (314)
Q Consensus       115 ~~~~~~~~~v~~~~~~~~k~~~l~c~~g~~~vg~~~~~~~Ge~~pcvp~~~i~~~~~~--~~~~~~dsfl~WLee  187 (314)
                      ++  +.+++++..   ++.+++++- +|++++-.                     |+.  .......||.+|+++
T Consensus        83 lp--~~~I~i~~~---~g~~ycld~-~g~V~~w~---------------------h~~~~~~ee~w~sf~~W~~~  130 (135)
T d2paga1          83 VP--RELIPICQD---GEDYYCVEE-DGTVLLWS---------------------AEEELVTEESWESVWHWARD  130 (135)
T ss_dssp             CC--TTSEEEEEE---TTEEEEECT-TSCEEEEC---------------------C---CEEEEEESSHHHHHHH
T ss_pred             CC--CceEEEEEC---CCceEEEec-CCCEEEEe---------------------CCCCCcccchhHhHHHHHHH
Confidence            65  567878764   355666653 34444311                     111  123467899999965