Citrus Sinensis ID: 021304

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310----
MASNNFFLPASVTSSGRPVLVPNEVECNLLSNVDIEHDQDDAVSFPPLKSGHFILTTHRLLFLSSSCSSTAVAIPLSAITHIFSSKRSLKSVFHSPRFRFQVSATPDNRIFDSDPGRVTGLRSVVITVVVRGKGDWELFLSKMWECWRGRAWAWETTPSETGPASASASASLYASDGSVRMVGVGGLLRKEQEMWESTDRSLQEAFQDLNALMNKAKEMVMLAEKMRQKLLAGSSSQSNSANDEELGSKEEMQDWLLSVGIVSPVTKESAGALYHQQLSRQLADFVKIPLERAGGMINLIDVYCLFNRARGTVR
ccccccccccccccccccEEcccccEEEEEcccEEEEccccccccccccccEEEEEEEEEEEEEccccccEEEEccccEEEEEcccccccccccccccccccccccccccccccccccccccccEEEEEEEccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHccccEEEHHHHHHHHHHcccccc
ccccccccccccccccccEcccccEEEEEccccEEEEccccccccccccccEEEEEEEEEEEEccccccEEEEEEHHHEEEEcccccccccccccccEEEEEccccccccccccccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHccccEEHHHHHHHHHHHccccc
masnnfflpasvtssgrpvlvpnevecnllsnvdiehdqddavsfpplksghfiLTTHRLLFLSsscsstavaiplSAITHIFsskrslksvfhsprfrfqvsatpdnrifdsdpgrvtgLRSVVITVVVRGKGDWELFLSKMWECWRgrawawettpsetgpasasaSASLyasdgsvrmVGVGGLLRKEQEMWESTDRSLQEAFQDLNALMNKAKEMVMLAEKMRQKLLagsssqsnsandeelgskEEMQDWLLSVgivspvtkesagALYHQQLSRQLADFVKIPLERAGGMINLIDVYCLFNRARGTVR
masnnfflpasvtssgrpvlVPNEVECNLLSNVDIEHDQDDAVSFPPLKSGHFILTTHRLLFLSSSCSSTAVAIPLSAITHIFSSKRSLKSVFHSPRFrfqvsatpdnrifdsdpgrvtglrsVVITVVVRGKGDWELFLSKMWECWRGRAWAWETTPSETGPASASASASLYASDGSVRMVGVGGLLRKEQEMWESTDRSLQEAFQDLNALMNKAKEMVMLAEKMRQKLlagsssqsnsaNDEELGSKEEMQDWLLSVGIVSPVTKESAGALYHQQLSRQLADFVKIPLEraggminlidVYCLFNRARGTVR
MASNNFFLPASVTSSGRPVLVPNEVECNLLSNVDIEHDQDDAVSFPPLKSGHFILTTHRLLFLSSSCSSTAVAIPLSAITHIFSSKRSLKSVFHSPRFRFQVSATPDNRIFDSDPGRVTGLRSVVITVVVRGKGDWELFLSKMWECWRGRAWAWETTPSETGPasasasaslyasDGSVRMVGVGGLLRKEQEMWESTDRSLQEAFQDLNALMNKAKEMVMLAEKMRQKLLAGSSSQSNSANDEELGSKEEMQDWLLSVGIVSPVTKESAGALYHQQLSRQLADFVKIPLERAGGMINLIDVYCLFNRARGTVR
*****************PVLVPNEVECNLLSNVDIEHDQDDAVSFPPLKSGHFILTTHRLLFLSSSCSSTAVAIPLSAITHIFSSKRSLKSVFHSPRFRFQVSATPDNRIFDSDPGRVTGLRSVVITVVVRGKGDWELFLSKMWECWRGRAWAWET***********************RMVGVGGLL*****************************************************************DWLLSVGIVSPVTKESAGALYHQQLSRQLADFVKIPLERAGGMINLIDVYCLFNR******
***NNFFLPASVTSSGRPVLVPNEVECNLLSNVDIEHDQDDAVSFPPLKSGHFILTTHRLLFLSSSCSSTAVAIPLSAITHI****************************************SVVITVVVRGKGDWELFLSKMWECWRGRAW****************************************************AFQDLNALMNKAKEMVMLA*****************************************************QLSRQLADFVKIPLERAGGMINLIDVYCLFNRARGT**
MASNNFFLPASVTSSGRPVLVPNEVECNLLSNVDIEHDQDDAVSFPPLKSGHFILTTHRLLFLSSSCSSTAVAIPLSAITHIFSSKRSLKSVFHSPRFRFQVSATPDNRIFDSDPGRVTGLRSVVITVVVRGKGDWELFLSKMWECWRGRAWAWE***************SLYASDGSVRMVGVGGLLRKEQEMWESTDRSLQEAFQDLNALMNKAKEMVMLAEKMRQ*********************EEMQDWLLSVGIVSPVTKESAGALYHQQLSRQLADFVKIPLERAGGMINLIDVYCLFNRARGTVR
*******LPA*VTSSGRPVLVPNEVECNLLSNVDIEHDQDDAVSFPPLKSGHFILTTHRLLFLSSSCSSTAVAIPLSAITHIFSSKRSLKSVFHSPRFRFQVSATP********PGR*TGLRSVVITVVVRGKGDWELFLSKMWECWRGRAWAWETT********************SVRMVGVGGLLRKEQEMWESTDRSLQEAFQDLNALMNKAKEMVMLAEKMRQKLLAG*******************QDWLLSVGIVSPVTKESAGALYHQQLSRQLADFVKIPLERAGGMINLIDVYCLFNRARG***
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MASNNFFLPASVTSSGRPVLVPNEVECNLLSNVDIEHDQDDAVSFPPLKSGHFILTTHRLLFLSSSCSSTAVAIPLSAITHIFSSKRSLKSVFHSPRFRFQVSATPDNRIFDSDPGRVTGLRSVVITVVVRGKGDWELFLSKMWECWRGRAWAWETTPSETGPASASASASLYASDGSVRMVGVGGLLRKEQEMWESTDRSLQEAFQDxxxxxxxxxxxxxxxxxxxxxLLAGSSSQSNSANDEELGSKEEMQDWLLSVGIVSPVTKESAGALYHQQLSRQLADFVKIPLERAGGMINLIDVYCLFNRARGTVR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query314 2.2.26 [Sep-21-2011]
Q9FF81 440 Vacuolar protein sorting- yes no 0.936 0.668 0.625 1e-106
Q91XD6 386 Vacuolar protein-sorting- yes no 0.796 0.647 0.335 8e-34
P0C0A2 386 Vacuolar protein-sorting- yes no 0.796 0.647 0.328 3e-33
Q7ZVK4 382 Vacuolar protein-sorting- yes no 0.767 0.630 0.344 1e-32
A5PK00 386 Vacuolar protein-sorting- yes no 0.796 0.647 0.324 3e-32
Q86VN1 386 Vacuolar protein-sorting- yes no 0.796 0.647 0.324 4e-32
Q6DDF4 388 Vacuolar protein-sorting- N/A no 0.735 0.595 0.352 3e-31
Q9VU87 399 Vacuolar protein-sorting- yes no 0.875 0.689 0.295 2e-21
Q54T18 611 Vacuolar protein-sorting- yes no 0.391 0.201 0.411 3e-19
O43038 467 Vacuolar protein-sorting- yes no 0.509 0.342 0.205 0.0003
>sp|Q9FF81|VPS36_ARATH Vacuolar protein sorting-associated protein 36 OS=Arabidopsis thaliana GN=VPS36 PE=1 SV=1 Back     alignment and function desciption
 Score =  383 bits (984), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 197/315 (62%), Positives = 241/315 (76%), Gaps = 21/315 (6%)

Query: 1   MASNNFFLPASVTSSGRPVLVPNEVECNLLSNVDIEHDQDDAVSFPPLKSGHFILTTHRL 60
           +A    F  A VT+SGRPVL  NEVEC LLS++DI+  +DD   F  L+SG+ ILTTHRL
Sbjct: 8   IAIGGLFENAEVTTSGRPVLRRNEVECFLLSSIDID-SEDDPPRFTALRSGNLILTTHRL 66

Query: 61  LFL-SSSCSSTAVAIPLSAITHIFSSKRSLKSVFHSPRFRFQVSATPDNRIFDSDPGRVT 119
           +++ S S  S   +IPLSA+THI+S K+S+KS+FHSPR RFQ           +DPG   
Sbjct: 67  IWIPSQSNESVPSSIPLSAVTHIYSHKKSIKSMFHSPRIRFQ-----------ADPG--- 112

Query: 120 GLRSVVITVVVRGKGDWELFLSKMWECWRGRAWAWETTPSETGPASASASAS--LYASDG 177
              S+V+T+V RGKGD++ FLSK+WECWRGRAW  E         S S + +  LY +DG
Sbjct: 113 ---SIVVTIVFRGKGDFDGFLSKLWECWRGRAWEEEEKSESETSKSGSGTVAQGLYGNDG 169

Query: 178 SVRMVGVGGLLRKEQEMWESTDRSLQEAFQDLNALMNKAKEMVMLAEKMRQKLLAGSSSQ 237
           +VRMVG+ G+LRKEQE WESTD+SLQ+AFQDLNALM+KAKEMV LAEKMRQKLL+  SSQ
Sbjct: 170 TVRMVGLAGILRKEQEQWESTDKSLQDAFQDLNALMSKAKEMVSLAEKMRQKLLSAPSSQ 229

Query: 238 SNSANDEELGSKEEMQDWLLSVGIVSPVTKESAGALYHQQLSRQLADFVKIPLERAGGMI 297
           + S +DEE+GSKEEMQ W+LSVGI+SPVTKESAGALYHQ+LSRQLADFV+IPLE+AGGMI
Sbjct: 230 NGSTDDEEMGSKEEMQQWMLSVGIISPVTKESAGALYHQELSRQLADFVRIPLEKAGGMI 289

Query: 298 NLIDVYCLFNRARGT 312
           +L D+Y  FNRARGT
Sbjct: 290 SLTDMYYHFNRARGT 304
Component of the ESCRT-II complex (endosomal sorting complex required for transport II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. The ESCRT-II complex is probably involved in the recruitment of the ESCRT-III complex.
Arabidopsis thaliana (taxid: 3702)
>sp|Q91XD6|VPS36_MOUSE Vacuolar protein-sorting-associated protein 36 OS=Mus musculus GN=Vps36 PE=1 SV=1 Back     alignment and function description
>sp|P0C0A2|VPS36_RAT Vacuolar protein-sorting-associated protein 36 OS=Rattus norvegicus GN=Vps36 PE=1 SV=1 Back     alignment and function description
>sp|Q7ZVK4|VPS36_DANRE Vacuolar protein-sorting-associated protein 36 OS=Danio rerio GN=vps36 PE=2 SV=1 Back     alignment and function description
>sp|A5PK00|VPS36_BOVIN Vacuolar protein-sorting-associated protein 36 OS=Bos taurus GN=VPS36 PE=2 SV=1 Back     alignment and function description
>sp|Q86VN1|VPS36_HUMAN Vacuolar protein-sorting-associated protein 36 OS=Homo sapiens GN=VPS36 PE=1 SV=1 Back     alignment and function description
>sp|Q6DDF4|VPS36_XENLA Vacuolar protein-sorting-associated protein 36 OS=Xenopus laevis GN=vps36 PE=2 SV=1 Back     alignment and function description
>sp|Q9VU87|VPS36_DROME Vacuolar protein-sorting-associated protein 36 OS=Drosophila melanogaster GN=Vps36 PE=2 SV=2 Back     alignment and function description
>sp|Q54T18|VPS36_DICDI Vacuolar protein-sorting-associated protein 36 OS=Dictyostelium discoideum GN=vps36 PE=3 SV=1 Back     alignment and function description
>sp|O43038|VPS36_SCHPO Vacuolar protein-sorting-associated protein 36 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vps36 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query314
255554859 439 Vacuolar protein sorting protein, putati 0.936 0.669 0.678 1e-114
449458079 439 PREDICTED: vacuolar protein sorting-asso 0.939 0.671 0.651 1e-109
449521443345 PREDICTED: vacuolar protein sorting-asso 0.939 0.855 0.651 1e-109
359487067 441 PREDICTED: vacuolar protein sorting-asso 0.942 0.671 0.648 1e-104
15238374 440 vacuolar protein sorting-associated prot 0.936 0.668 0.625 1e-104
356526368 449 PREDICTED: vacuolar protein sorting-asso 0.961 0.672 0.651 1e-103
297810583 436 vacuolar protein sorting 36 family prote 0.926 0.667 0.621 1e-103
224110074 446 predicted protein [Populus trichocarpa] 0.920 0.647 0.640 1e-103
359487001 532 PREDICTED: LOW QUALITY PROTEIN: vacuolar 0.942 0.556 0.642 1e-102
357515701 442 Vacuolar protein sorting protein [Medica 0.945 0.671 0.623 4e-98
>gi|255554859|ref|XP_002518467.1| Vacuolar protein sorting protein, putative [Ricinus communis] gi|223542312|gb|EEF43854.1| Vacuolar protein sorting protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/320 (67%), Positives = 252/320 (78%), Gaps = 26/320 (8%)

Query: 2   ASNNFFLPASVTSSGRPVLVPNEVECNLLSNVDIEHDQDDAVSFPPLKSGHFILTTHRLL 61
            +NNFF  AS+TSSGRPVL+PNEVEC LLS VD+E D+D   +F PLKSG  ILTTHRLL
Sbjct: 3   GNNNFFPSASLTSSGRPVLLPNEVECQLLSAVDLE-DEDVNANFSPLKSGVLILTTHRLL 61

Query: 62  FLSSSC--SSTAVAIPLSAITHIFSSKRSLKSVFHSPRFRFQVSATPDNRIFDSDPGRVT 119
           +L S+   +STA AIPLS IT IFSSK+S+KS+FHSPR RFQVS                
Sbjct: 62  WLPSNSISNSTATAIPLSFITCIFSSKKSIKSIFHSPRIRFQVSVHS------------- 108

Query: 120 GLRSVVITVVVRGKGDWELFLSKMWECWRGRAWAWETTPSETGPAS-------ASASASL 172
             +S+V+T+V+RGKGD + FL+K  E W GRAW  +T  S +G ++       +S S   
Sbjct: 109 --KSLVVTLVLRGKGDSDGFLAKFLESWNGRAWETDTGGSSSGDSAPTLVSGASSNSGGF 166

Query: 173 YASDGSVRMVGVGGLLRKEQEMWESTDRSLQEAFQDLNALMNKAKEMVMLAEKMRQKLLA 232
           Y+SDGSVRMVGV G+LRKEQ+MWESTD+SLQEAFQDLNALM+KAKEM+ LAEKMRQKLL+
Sbjct: 167 YSSDGSVRMVGVAGILRKEQQMWESTDKSLQEAFQDLNALMSKAKEMMTLAEKMRQKLLS 226

Query: 233 GSSSQSNSANDEELGSKEEMQDWLLSVGIVSPVTKESAGALYHQQLSRQLADFVKIPLER 292
           GS+S S   N EE+GSKEEMQDWLLSVGI+SPVTKESAGALYHQQLSRQLADFVKIPLER
Sbjct: 227 GSNSHSADTN-EEMGSKEEMQDWLLSVGIISPVTKESAGALYHQQLSRQLADFVKIPLER 285

Query: 293 AGGMINLIDVYCLFNRARGT 312
           AGGMINLID+YCLFNRARGT
Sbjct: 286 AGGMINLIDIYCLFNRARGT 305

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449458079|ref|XP_004146775.1| PREDICTED: vacuolar protein sorting-associated protein 36-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449521443|ref|XP_004167739.1| PREDICTED: vacuolar protein sorting-associated protein 36-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|359487067|ref|XP_002270954.2| PREDICTED: vacuolar protein sorting-associated protein 36-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|15238374|ref|NP_196112.1| vacuolar protein sorting-associated protein 36 [Arabidopsis thaliana] gi|75170174|sp|Q9FF81.1|VPS36_ARATH RecName: Full=Vacuolar protein sorting-associated protein 36; Short=AtVPS36; AltName: Full=ESCRT-II complex subunit VPS36 gi|10178031|dbj|BAB11514.1| unnamed protein product [Arabidopsis thaliana] gi|18175694|gb|AAL59912.1| unknown protein [Arabidopsis thaliana] gi|20465997|gb|AAM20220.1| unknown protein [Arabidopsis thaliana] gi|332003421|gb|AED90804.1| vacuolar protein sorting-associated protein 36 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356526368|ref|XP_003531790.1| PREDICTED: vacuolar protein sorting-associated protein 36-like [Glycine max] Back     alignment and taxonomy information
>gi|297810583|ref|XP_002873175.1| vacuolar protein sorting 36 family protein [Arabidopsis lyrata subsp. lyrata] gi|297319012|gb|EFH49434.1| vacuolar protein sorting 36 family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|224110074|ref|XP_002315405.1| predicted protein [Populus trichocarpa] gi|222864445|gb|EEF01576.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359487001|ref|XP_003633505.1| PREDICTED: LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 36-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|357515701|ref|XP_003628139.1| Vacuolar protein sorting protein [Medicago truncatula] gi|355522161|gb|AET02615.1| Vacuolar protein sorting protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query314
TAIR|locus:2175274 440 AT5G04920 "AT5G04920" [Arabido 0.936 0.668 0.622 1.8e-94
MGI|MGI:1917410 386 Vps36 "vacuolar protein sortin 0.764 0.621 0.340 1.1e-30
UNIPROTKB|Q86VN1 386 VPS36 "Vacuolar protein-sortin 0.589 0.479 0.356 1.4e-25
RGD|1309754 386 Vps36 "vacuolar protein sortin 0.589 0.479 0.356 2.9e-25
UNIPROTKB|P0C0A2 386 Vps36 "Vacuolar protein-sortin 0.589 0.479 0.356 2.9e-25
UNIPROTKB|F1RMD6 386 VPS36 "Uncharacterized protein 0.589 0.479 0.356 3.6e-25
ZFIN|ZDB-GENE-030131-7753 382 vps36 "vacuolar protein sortin 0.461 0.379 0.422 3.6e-25
UNIPROTKB|F1MT69 386 VPS36 "Vacuolar protein-sortin 0.589 0.479 0.356 5.9e-25
UNIPROTKB|A5PK00 386 VPS36 "Vacuolar protein-sortin 0.589 0.479 0.356 5.9e-25
UNIPROTKB|E2QV84 386 VPS36 "Uncharacterized protein 0.589 0.479 0.356 7.6e-25
TAIR|locus:2175274 AT5G04920 "AT5G04920" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 940 (336.0 bits), Expect = 1.8e-94, P = 1.8e-94
 Identities = 196/315 (62%), Positives = 238/315 (75%)

Query:     1 MASNNFFLPASVTSSGRPVLVPNEVECNLLSNVDIEHDQDDAVSFPPLKSGHFILTTHRL 60
             +A    F  A VT+SGRPVL  NEVEC LLS++DI+  +DD   F  L+SG+ ILTTHRL
Sbjct:     8 IAIGGLFENAEVTTSGRPVLRRNEVECFLLSSIDID-SEDDPPRFTALRSGNLILTTHRL 66

Query:    61 LFL-SSSCSSTAVAIPLSAITHIFSSKRSLKSVFHSPRFRFQVSATPDNRIFDSDPGRVT 119
             +++ S S  S   +IPLSA+THI+S K+S+KS+FHSPR RFQ           +DPG   
Sbjct:    67 IWIPSQSNESVPSSIPLSAVTHIYSHKKSIKSMFHSPRIRFQ-----------ADPG--- 112

Query:   120 GLRSVVITVVVRGKGDWELFLSKMWECWRGRAWAWET-TPSETGPXXXXXXXXXXXX-DG 177
                S+V+T+V RGKGD++ FLSK+WECWRGRAW  E  + SET               DG
Sbjct:   113 ---SIVVTIVFRGKGDFDGFLSKLWECWRGRAWEEEEKSESETSKSGSGTVAQGLYGNDG 169

Query:   178 SVRMVGVGGLLRKEQEMWESTDRSLQEAFQDLNALMNKAKEMVMLAEKMRQKLLAGSSSQ 237
             +VRMVG+ G+LRKEQE WESTD+SLQ+AFQDLNALM+KAKEMV LAEKMRQKLL+  SSQ
Sbjct:   170 TVRMVGLAGILRKEQEQWESTDKSLQDAFQDLNALMSKAKEMVSLAEKMRQKLLSAPSSQ 229

Query:   238 SNSANDEELGSKEEMQDWLLSVGIVSPVTKESAGALYHQQLSRQLADFVKIPLERAGGMI 297
             + S +DEE+GSKEEMQ W+LSVGI+SPVTKESAGALYHQ+LSRQLADFV+IPLE+AGGMI
Sbjct:   230 NGSTDDEEMGSKEEMQQWMLSVGIISPVTKESAGALYHQELSRQLADFVRIPLEKAGGMI 289

Query:   298 NLIDVYCLFNRARGT 312
             +L D+Y  FNRARGT
Sbjct:   290 SLTDMYYHFNRARGT 304
GO:0005215 "transporter activity" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0016192 "vesicle-mediated transport" evidence=ISS
GO:0000814 "ESCRT II complex" evidence=ISS
GO:0005515 "protein binding" evidence=IPI
MGI|MGI:1917410 Vps36 "vacuolar protein sorting 36 (yeast)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q86VN1 VPS36 "Vacuolar protein-sorting-associated protein 36" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1309754 Vps36 "vacuolar protein sorting 36 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P0C0A2 Vps36 "Vacuolar protein-sorting-associated protein 36" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1RMD6 VPS36 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-7753 vps36 "vacuolar protein sorting 36 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1MT69 VPS36 "Vacuolar protein-sorting-associated protein 36" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|A5PK00 VPS36 "Vacuolar protein-sorting-associated protein 36" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2QV84 VPS36 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FF81VPS36_ARATHNo assigned EC number0.62530.93630.6681yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query314
pfam04157219 pfam04157, EAP30, EAP30/Vps36 family 3e-30
pfam1160593 pfam11605, Vps36_ESCRT-II, Vacuolar protein sortin 2e-11
cd13227126 cd13227, PH-like_Vps36_GLUE, Vps36 GLUE (GRAM-like 1e-04
cd13226128 cd13226, PH-like_Eap45_GLUE, Eap45 GLUE (GRAM-like 0.001
>gnl|CDD|217934 pfam04157, EAP30, EAP30/Vps36 family Back     alignment and domain information 
 Score =  113 bits (286), Expect = 3e-30
 Identities = 40/136 (29%), Positives = 67/136 (49%), Gaps = 12/136 (8%)

Query: 182 VGVGGLLRKEQEMWESTDRSLQEAFQDLNALMNKAKEMVMLAEKMRQKLLAGSSSQSNSA 241
           VG+ G+ R  +E  +  D  LQ AF+DL ALM +AK+ V L E   +K  +   +     
Sbjct: 1   VGIAGIERSREEQRKYNDLGLQLAFEDLEALMKQAKDFVELLESFAKKHKSEIKANPE-- 58

Query: 242 NDEELGSKEEMQDWLLSVGIVSPVTKE----SAGALYHQQLSRQLADFVKIPLERAGGMI 297
                  + + Q    S+G+    +K+         ++ +L+ Q+ +     L+  GG+I
Sbjct: 59  ------FRAQFQSMCASLGVDPLASKKGSVLGGVGDFYYELAVQIVEICLATLKENGGII 112

Query: 298 NLIDVYCLFNRARGTV 313
           +L D+Y L+NRARG  
Sbjct: 113 SLQDLYALYNRARGGT 128

This family includes EAP30 as well as the Vps36 protein. Vps36 is involved in Golgi to endosome trafficking. EAP30 is a subunit of the ELL complex. The ELL is an 80-kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. Length = 219
>gnl|CDD|221148 pfam11605, Vps36_ESCRT-II, Vacuolar protein sorting protein 36 Vps36 Back     alignment and domain information
>gnl|CDD|241381 cd13227, PH-like_Vps36_GLUE, Vps36 GLUE (GRAM-like ubiquitin-binding in Eap45) Pleckstrin homology-like domain Back     alignment and domain information
>gnl|CDD|241380 cd13226, PH-like_Eap45_GLUE, Eap45 GLUE (GRAM-like ubiquitin-binding in Eap45) Pleckstrin homology-like domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 314
KOG2760 432 consensus Vacuolar sorting protein VPS36 [Intracel 100.0
PF1160589 Vps36_ESCRT-II: Vacuolar protein sorting protein 3 99.94
PF04157223 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP 99.94
KOG3294261 consensus WW domain binding protein WBP-2, contain 99.68
PF1447096 bPH_3: Bacterial PH domain 97.41
PF0289369 GRAM: GRAM domain; InterPro: IPR004182 The GRAM do 97.33
smart0056861 GRAM domain in glucosyltransferases, myotubularins 97.12
smart0068355 DM16 Repeats in sea squirt COS41.4, worm R01H10.6, 96.73
PF0856779 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal dom 96.51
KOG3341 249 consensus RNA polymerase II transcription factor c 96.27
PF08000124 bPH_1: Bacterial PH domain; InterPro: IPR012544 Th 96.25
PF07289339 DUF1448: Protein of unknown function (DUF1448); In 94.93
PF10349116 WWbp: WW-domain ligand protein; InterPro: IPR01882 94.82
PF07289339 DUF1448: Protein of unknown function (DUF1448); In 94.25
PF03517135 Voldacs: Regulator of volume decrease after cellul 89.55
>KOG2760 consensus Vacuolar sorting protein VPS36 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=1.5e-66  Score=491.16  Aligned_cols=293  Identities=33%  Similarity=0.539  Sum_probs=248.0

Q ss_pred             CCccccccCCCCeeecCCceEEEeecceeeeeCCCCCC---------------------CCCCCcceEEEEeecceEEe-
Q 021304            6 FFLPASVTSSGRPVLVPNEVECNLLSNVDIEHDQDDAV---------------------SFPPLKSGHFILTTHRLLFL-   63 (314)
Q Consensus         6 ~~~~~~~t~sgrpvL~~~E~~l~~~~~V~Ly~g~~k~~---------------------~~~~~q~G~l~LTshRIi~~-   63 (314)
                      +|+++++|+||+|+|.|+|..+++++.|++|+|+.+.+                     +++++++|++.|||||+||. 
T Consensus         1 ~~fy~ett~s~~~~~~~~e~~~~~~q~~~~~fg~~~~~~~~ne~l~lt~~~I~~~D~~~k~~~~~dg~~vltt~Rliw~~   80 (432)
T KOG2760|consen    1 YWFYVETTSSGQPLLSPGEEDIFIDQSVMLRFGWSKILRSQNETLLLTSQRIIIYDGDKKTTKFDDGTLVLTTHRLIWRS   80 (432)
T ss_pred             CceEEEecCCCCCCCCCcccceeeecccchhcccchhhhccCceEEEeecceEEecCCCccccccchhhhhhhceeeecC
Confidence            69999999999999999999999998888888876532                     24778999999999999998 


Q ss_pred             --eCCCCCceEEEecCceeeecccCCccccccCCCceeeeeecCCCCCCCCCCCCCcCCCCccEEEEEEecCCChHhHHH
Q 021304           64 --SSSCSSTAVAIPLSAITHIFSSKRSLKSVFHSPRFRFQVSATPDNRIFDSDPGRVTGLRSVVITVVVRGKGDWELFLS  141 (314)
Q Consensus        64 --d~~~~~~s~~lpL~~i~~~~~~~~~lr~~~~s~ki~~~l~~~p~~~~~d~~p~~~~~s~~~~iklSFr~~G~~~~F~~  141 (314)
                        +..+...+.+|||+.|.+++.+..+-..+...++|..++.+|+.+    ..|+|-..+.+.+|+||||++|+ .+||+
T Consensus        81 p~~~~~~~~~~~~pls~vI~v~~~~~~~~~~g~~~~i~~~~~~~~~~----~~~gp~~a~~~~~iqLsFR~~g~-~~F~~  155 (432)
T KOG2760|consen   81 PTSSADVEVTWVCPLSMVINVGEPAKSELTFGKINRIVVILHKPNPR----FSPGPCPASTFAFIQLSFRGSGS-VDFLE  155 (432)
T ss_pred             cccccccceeeeeceeEEEEecCccchhhcccccceEEEEeCCCCCc----CCCCCcccceeeEEEEEecCCCc-HHHHH
Confidence              455567788999999999998887644456788888887766653    35777767778899999996655 88999


Q ss_pred             HHHHHHhhccccccCCCCCCCCCCCcc----ccccccCCCcccccchhHHHhchHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 021304          142 KMWECWRGRAWAWETTPSETGPASASA----SASLYASDGSVRMVGVGGLLRKEQEMWESTDRSLQEAFQDLNALMNKAK  217 (314)
Q Consensus       142 ~L~~aL~~k~W~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~GI~gier~~e~~~~~~~~~l~~Af~DL~~LM~~Ak  217 (314)
                      ++++.+.++.|+  .........+..+    .+...+..++.+++||+||||+.|+|+++||.+|++||+||++||++||
T Consensus       156 ~l~ee~~~r~we--~~~~s~s~~~~r~s~~~~e~~~~~~~t~r~vGI~giEr~~e~q~~~td~~i~~AFqDLskLMs~Ak  233 (432)
T KOG2760|consen  156 ALLEEKNKRIWE--RNSVSESGVDMRKSSPSHEYEVPFIGTLRMVGISGIERSLEEQLKKTDKTINNAFQDLSKLMSLAK  233 (432)
T ss_pred             HHHHHHHHHHHH--hccccccccccccCcccccccccccceeeeechhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence            999999999999  4443211111111    1111223456789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCccccccHHHHHHHHHhcCCCCCcccccch---hhhHHHHHHHHHHHhhhhhhccC
Q 021304          218 EMVMLAEKMRQKLLAGSSSQSNSANDEELGSKEEMQDWLLSVGIVSPVTKESAG---ALYHQQLSRQLADFVKIPLERAG  294 (314)
Q Consensus       218 emv~La~~~~~k~~~~~~~~~~~~~~e~~~~~~~~~s~l~slGi~~pvt~d~~~---~~y~~eLArela~~l~~~l~k~g  294 (314)
                      |||.||++++.|++++   ++++++||++    .+++++++|||.+|||+|.++   ++||+||||||+|||..++++.|
T Consensus       234 emv~Lsk~~~~Km~~~---~g~i~dDetv----~~ks~llsLGI~dpvt~~n~~~s~~~Y~~~Lakqlse~l~~~lee~g  306 (432)
T KOG2760|consen  234 EMVSLSKSIAEKMKSK---TGEIQDDETV----RFKSYLLSLGILDPVTKDNFGLSLSLYHQELAKQLSEFLRLPLEENG  306 (432)
T ss_pred             HHHHHHHHHHHHHHhh---cCCcCchhhh----hhHHhhhhhccCCcchhccccchHHHHHHHHHHHHHHHHhcchhhcC
Confidence            9999999999999976   6778889987    699999999999999999986   99999999999999999999999


Q ss_pred             ceeehhHHHHHHhhccCC
Q 021304          295 GMINLIDVYCLFNRARGT  312 (314)
Q Consensus       295 gmitL~Dvy~~~NRARG~  312 (314)
                      |||||+||||+||||||+
T Consensus       307 gmisLtdvY~~~NRaRG~  324 (432)
T KOG2760|consen  307 GMISLTDVYCRYNRARGT  324 (432)
T ss_pred             CEEEHHHHHHHHHHhccC
Confidence            999999999999999996

>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes Back     alignment and domain information
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex Back     alignment and domain information
>KOG3294 consensus WW domain binding protein WBP-2, contains GRAM domain [Signal transduction mechanisms] Back     alignment and domain information
>PF14470 bPH_3: Bacterial PH domain Back     alignment and domain information
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins Back     alignment and domain information
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins Back     alignment and domain information
>smart00683 DM16 Repeats in sea squirt COS41 Back     alignment and domain information
>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity Back     alignment and domain information
>KOG3341 consensus RNA polymerase II transcription factor complex subunit [Transcription] Back     alignment and domain information
>PF08000 bPH_1: Bacterial PH domain; InterPro: IPR012544 This family contains many bacterial hypothetical proteins Back     alignment and domain information
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5) Back     alignment and domain information
>PF10349 WWbp: WW-domain ligand protein; InterPro: IPR018826 This entry represents a sequence domain found in WW domain-binding protein that is characterised by several short PY and PT-like motifs of the PPPPY form Back     alignment and domain information
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5) Back     alignment and domain information
>PF03517 Voldacs: Regulator of volume decrease after cellular swelling; InterPro: IPR003521 The nucleotide-sensitive chloride conductance regulatory protein (ICln) is found ubiquitously in mammalian (and other) cell types and is postulated to play a critical role in cell volume regulation Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query314
2zme_B 238 Integrated Structural And Functional Model Of The H 1e-26
3cuq_B 218 Integrated Structural And Functional Model Of The H 3e-22
>pdb|2ZME|B Chain B, Integrated Structural And Functional Model Of The Human Escrt-Ii Complex Length = 238 Back     alignment and structure 
Iteration: 1

 Score =  117 bits (292), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 60/137 (43%), Positives = 92/137 (67%), Gaps = 9/137 (6%)
Query: 177 GSVRMVGVGGLLRKEQEMWESTDRSLQEAFQDLNALMNKAKEMVMLAEKMRQKLLAGSSS 236
           G +R VG+ G+ RK +E  + TD+++ EAF+DL+ LM KAKEMV L++ +  K+      
Sbjct: 1   GRIRAVGIVGIERKLEEKRKETDKNISEAFEDLSKLMIKAKEMVELSKSIANKI---KDK 57
Query: 237 QSNSANDEELGSKEEMQDWLLSVGIVSPVTKES--AGALYHQQLSRQLADFVKIPLERAG 294
           Q +   DE +      + +LLS+GI +PVT+E+  +G  YH QL++QLA  +++PLE  G
Sbjct: 58  QGDITEDETI----RFKSYLLSMGIANPVTRETYGSGTQYHMQLAKQLAGILQVPLEERG 113
Query: 295 GMINLIDVYCLFNRARG 311
           G+++L +VYCL NRARG
Sbjct: 114 GIMSLTEVYCLVNRARG 130
>pdb|3CUQ|B Chain B, Integrated Structural And Functional Model Of The Human Escrt-Ii Complex Length = 218 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query314
3cuq_B 218 Vacuolar protein-sorting-associated protein 36; ES 4e-36
1w7p_D 566 VPS36P, YLR417W; ESCRT-II complex, endosomal prote 2e-33
1w7p_D 566 VPS36P, YLR417W; ESCRT-II complex, endosomal prote 1e-08
2hth_B140 Vacuolar protein sorting protein 36; GLUE domain, 7e-18
2cay_A145 VPS36 PH domain, vacuolar protein sorting protein 5e-16
1u5t_B 169 Defective in vacuolar protein sorting; VPS36P; ESC 2e-10
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B Length = 218 Back     alignment and structure
 Score =  128 bits (323), Expect = 4e-36
 Identities = 49/117 (41%), Positives = 75/117 (64%), Gaps = 9/117 (7%)

Query: 198 TDRSLQEAFQDLNALMNKAKEMVMLAEKMRQKLLAGSSSQSNSANDEELGSKEEMQDWLL 257
           TD+++ EAF+DL+ LM KAKEMV L++ +  K+       +              + +LL
Sbjct: 2   TDKNISEAFEDLSKLMIKAKEMVELSKSIANKIKDKQGDITEDET-------IRFKSYLL 54

Query: 258 SVGIVSPVTKES--AGALYHQQLSRQLADFVKIPLERAGGMINLIDVYCLFNRARGT 312
           S+GI +PVT+E+  +G  YH QL++QLA  +++PLE  GG+++L +VYCL NRARG 
Sbjct: 55  SMGIANPVTRETYGSGTQYHMQLAKQLAGILQVPLEERGGIMSLTEVYCLVNRARGM 111
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 Length = 566 Back     alignment and structure
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 Length = 566 Back     alignment and structure
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A Length = 140 Back     alignment and structure
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12 Length = 145 Back     alignment and structure
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 Length = 169 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query314
1w7p_D 566 VPS36P, YLR417W; ESCRT-II complex, endosomal prote 100.0
2hth_B140 Vacuolar protein sorting protein 36; GLUE domain, 100.0
2cay_A145 VPS36 PH domain, vacuolar protein sorting protein 100.0
3cuq_B 218 Vacuolar protein-sorting-associated protein 36; ES 99.96
3cuq_A 234 Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nu 99.24
1u5t_A 233 Appears to BE functionally related to SNF7; SNF8P; 99.16
1zsq_A 528 Myotubularin-related protein 2; protein-phospholip 97.54
1lw3_A 657 Myotubularin-related protein 2; protein-phosphate 97.51
1u5t_B 169 Defective in vacuolar protein sorting; VPS36P; ESC 96.93
1zyi_A171 Methylosome subunit picln; PH domain, cell volume 96.74
1pfj_A108 TFIIH basal transcription factor complex P62 subun 96.67
3hsa_A126 Pleckstrin homology domain; YP_926556.1, structura 96.35
1y5o_A115 TFB1, RNA polymerase II transcription factor B 73 94.67
2yf0_A 512 Myotubularin-related protein 6; hydrolase; 2.65A { 93.44
3b77_A193 Uncharacterized protein; pleckstrin-homology domai 91.12
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 Back     alignment and structure
Probab=100.00  E-value=5.7e-69  Score=538.64  Aligned_cols=290  Identities=18%  Similarity=0.277  Sum_probs=44.1

Q ss_pred             CCCCccccccCCCCeeecCCceEEEeecceeeeeCCCCCCCCCCCcceEEEEeecceEEeeCCC-CCceEEEecCceeee
Q 021304            4 NNFFLPASVTSSGRPVLVPNEVECNLLSNVDIEHDQDDAVSFPPLKSGHFILTTHRLLFLSSSC-SSTAVAIPLSAITHI   82 (314)
Q Consensus         4 ~~~~~~~~~t~sgrpvL~~~E~~l~~~~~V~Ly~g~~k~~~~~~~q~G~l~LTshRIi~~d~~~-~~~s~~lpL~~i~~~   82 (314)
                      |+||++|++|+||||+|.++|++++++++||||+|++|   +++||+|++|||||||||+|+.+ .+.|++|||++|.++
T Consensus         1 m~~~~~~~~t~s~rp~L~~~E~~l~vqd~VgLY~Gk~K---i~~~q~G~~yLTShRiiyvD~~~p~~~s~~l~L~~I~~~   77 (566)
T 1w7p_D            1 MEYWHYVETTSSGQPLLREGEKDIFIDQSVGLYHGKSK---ILQRQRGRIFLTSQRIIYIDDAKPTQNSLGLELDDLAYV   77 (566)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCccccccccccCCcccCCCceEEEeecccccccCCcC---CccccCceEEEEeeeEEEecCCCCcceEEEEEhHHccee
Confidence            78999999999999999999999999999999999997   99999999999999999999987 458999999999999


Q ss_pred             cccCCccccccCCCceeeeeecCCCCC----------------C--------------CC--------------------
Q 021304           83 FSSKRSLKSVFHSPRFRFQVSATPDNR----------------I--------------FD--------------------  112 (314)
Q Consensus        83 ~~~~~~lr~~~~s~ki~~~l~~~p~~~----------------~--------------~d--------------------  112 (314)
                      ++.++|||   +||||.+++.+++.++                |              +|                    
T Consensus        78 e~~agflk---sSpKI~L~l~~~~~~~~~~~~~~~~~~~~~~tWvC~ICsfsN~~~~~f~~~~~~~p~C~~CGi~p~~~~  154 (566)
T 1w7p_D           78 NYSSGFLT---RSPRLILFFKDPSSKDELGKSAETASADVVSTWVCPICMVSNETQGEFTKDTLPTPICINCGVPADYEL  154 (566)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eeeecccc---CCCceEEeecCcccccccCCCCCCcccccccceeccccccCCCCCCCCCcccCCCCcccccCCCCchhh
Confidence            99999977   6888887665432100                0              00                    


Q ss_pred             -----------------------------------------------------C--------------------------
Q 021304          113 -----------------------------------------------------S--------------------------  113 (314)
Q Consensus       113 -----------------------------------------------------~--------------------------  113 (314)
                                                                           +                          
T Consensus       155 ~k~~i~~~~~~~~~~~~~~~~~~~~~~~CP~CTF~NHPsl~~CEiCg~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (566)
T 1w7p_D          155 TKSSINCSNAIDPNANPQNQFGVNSENICPACTFANHPQIGNCEICGHRLPNASKVRSKLNRLNFHDSRVHIELEKNSLA  234 (566)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhhhhhccccCCCcccCccccccccCCCCCcccccCChhhhcccccCCcCCCcccccccccccccccccccccccccccc
Confidence                                                                 0                          


Q ss_pred             ---CCCCc------CCCCccEEEEEEecCCChHhHHHHHHHHHhhccccccCCCCCCC------CCCCcccc--------
Q 021304          114 ---DPGRV------TGLRSVVITVVVRGKGDWELFLSKMWECWRGRAWAWETTPSETG------PASASASA--------  170 (314)
Q Consensus       114 ---~p~~~------~~s~~~~iklSFr~~G~~~~F~~~L~~aL~~k~W~~~~~~~~~~------~~~~~~~~--------  170 (314)
                         .|+|.      .++...+|||||| +||++.||++|+++|.+++|+  ..++...      ++.+....        
T Consensus       235 ~~~sp~p~~~s~~~~~~~~~~iKLSFR-~gg~~~F~~~L~~aL~~~~W~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  311 (566)
T 1w7p_D          235 RNKSSHSALSSSSSTGSSTEFVQLSFR-KSDGVLFSQATERALENILTE--KNKHIFNQNVVSVNGVDMRKGASSHEYNN  311 (566)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccCCCcccccccCCCccCceEEEEEc-CCCchHHHHHHHHHHHHHHhh--hCCCccCCCcccccccccccccccccccc
Confidence               01110      0113469999999 556699999999999999998  5544321      11000000        


Q ss_pred             ccccCCCcccccchhHHHhchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCccccccHH
Q 021304          171 SLYASDGSVRMVGVGGLLRKEQEMWESTDRSLQEAFQDLNALMNKAKEMVMLAEKMRQKLLAGSSSQSNSANDEELGSKE  250 (314)
Q Consensus       171 ~~~~~~~~~~~~GI~gier~~e~~~~~~~~~l~~Af~DL~~LM~~Akemv~La~~~~~k~~~~~~~~~~~~~~e~~~~~~  250 (314)
                      ..+......+.+||+||||+.|+++++|+..|++||+||++||++|||||+||++|+++++++.+   +++++++.....
T Consensus       312 ~~~~~~~~~~~~GI~gler~~e~~~~~~~~~i~~Af~DL~~LM~~AkemV~La~~~~~~~~~~~~---~~s~~~~~~e~~  388 (566)
T 1w7p_D          312 EVPFIETKLSRIGISSLEKSRENQLLNNDILFNNALTDLNKLMSLATSIERLYKNSNITMKTKTL---NLQDESTVNEPK  388 (566)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccCcccCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccc---CCCCCccchhhH
Confidence            00112233478999999999999999999999999999999999999999999999999987633   222222211112


Q ss_pred             HHHHHHHhcCCCCCcccccc--hhhhHHHHHHHHHHHhhhhh----hc-cCceeehhHHHHHHhhc-cCC
Q 021304          251 EMQDWLLSVGIVSPVTKESA--GALYHQQLSRQLADFVKIPL----ER-AGGMINLIDVYCLFNRA-RGT  312 (314)
Q Consensus       251 ~~~s~l~slGi~~pvt~d~~--~~~y~~eLArela~~l~~~l----~k-~ggmitL~Dvy~~~NRA-RG~  312 (314)
                      +++++|       |||||++  +..||.||||||+|||....    ++ .||||+|+||||+|||| ||+
T Consensus       389 ~~~s~L-------~Vtrd~~~s~~~f~~ELA~qI~E~c~~~~~~~l~~~nGGmItL~DL~~~~NRa~R~g  451 (566)
T 1w7p_D          389 TRRPLL-------ILDREKFLNKELFLDEIAREIYEFTLSEFKDLNSDTNYMIITLVDLYAMYNKSMRIG  451 (566)
T ss_dssp             --------------CCSSCCCCHHHHHHHHHHHHHHHHHHTTCCSSCSCCCCEEEHHHHHHHHHHHTTTT
T ss_pred             hhHhhc-------ccchhhcCChhHHHHHHHHHHHHHHHhhhcccchhcCcCeEEHHHHHHHHHHhccCC
Confidence            466666       8999965  79999999999999998766    77 99999999999999999 954
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A Back     alignment and structure
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12 Back     alignment and structure
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B Back     alignment and structure
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A Back     alignment and structure
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A Back     alignment and structure
>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A* Back     alignment and structure
>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A Back     alignment and structure
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 Back     alignment and structure
>1zyi_A Methylosome subunit picln; PH domain, cell volume regulation, RNA splicing, translation; NMR {Canis lupus familiaris} Back     alignment and structure
>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B Back     alignment and structure
>3hsa_A Pleckstrin homology domain; YP_926556.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE MLY; 1.99A {Shewanella amazonensis SB2B} SCOP: b.55.1.13 PDB: 3dcx_A* Back     alignment and structure
>1y5o_A TFB1, RNA polymerase II transcription factor B 73 kDa subunit; TFIIH, PH domain, phosphoinositides, VP16; NMR {Saccharomyces cerevisiae} SCOP: b.55.1.9 PDB: 2gs0_A 2k2u_A 2l2i_A 2lox_A* Back     alignment and structure
>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens} Back     alignment and structure
>3b77_A Uncharacterized protein; pleckstrin-homology domain, structural genomics, joint cente structural genomics, JCSG; 2.42A {Exiguobacterium sibiricum} SCOP: b.55.1.13 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 314
d2caya1130 b.55.1.12 (A:1-99,A:252-282) Vacuolar protein sort 1e-18
d2hthb1129 b.55.1.12 (B:3-131) Vacuolar protein sorting prote 2e-16
d1u5tb194 a.4.5.54 (B:396-489) Vacuolar protein sorting-asso 9e-13
d1zsqa1125 b.55.1.8 (A:74-198) Myotubularin-related protein 2 0.001
>d2caya1 b.55.1.12 (A:1-99,A:252-282) Vacuolar protein sorting protein 36, VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 130 Back     information, alignment and structure

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: VPS36 N-terminal domain-like
domain: Vacuolar protein sorting protein 36, VPS36
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 78.0 bits (192), Expect = 1e-18
 Identities = 25/149 (16%), Positives = 52/149 (34%), Gaps = 22/149 (14%)

Query: 5   NFFLPASVTSSGRPVLVPNEVECNLLSNVDIEHDQDDAVSFPPLKSGHFILTTHRLLFLS 64
            ++     TSSG+P+L   E +  +  +V + H +         + G   LT+ R++++ 
Sbjct: 2   EYWHYVETTSSGQPLLREGEKDIFIDQSVGLYHGKSK---ILQRQRGRIFLTSQRIIYID 58

Query: 65  SS-CSSTAVAIPLSAITHIFSSKRSLKSVFHSPRFRFQVSATPDNRIFDSDPGRVTGLRS 123
            +  +  ++ + L  + ++  S   L     SPR        P +              +
Sbjct: 59  DAKPTQNSLGLELDDLAYVNYSSGFLTR---SPRLILFF-KDPSS-------------ST 101

Query: 124 VVITVVVRGKGDWELFLSKMWECWRGRAW 152
             + +  R K D  LF             
Sbjct: 102 EFVQLSFR-KSDGVLFSQATERALENILT 129
>d2hthb1 b.55.1.12 (B:3-131) Vacuolar protein sorting protein 36, VPS36 {Human (Homo sapiens) [TaxId: 9606]} Length = 129 Back     information, alignment and structure
>d1u5tb1 a.4.5.54 (B:396-489) Vacuolar protein sorting-associated protein VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 94 Back     information, alignment and structure
>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 125 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query314
d2caya1130 Vacuolar protein sorting protein 36, VPS36 {Baker' 100.0
d2hthb1129 Vacuolar protein sorting protein 36, VPS36 {Human 99.97
d1u5tb194 Vacuolar protein sorting-associated protein VPS36 99.74
d1zsqa1125 Myotubularin-related protein 2, N-terminal domain 98.4
d2rnrb1108 TFIIH basal transcription factor complex p62 subun 97.16
d3dcxa1116 Uncharacterized protein Shew0819 {Shewanella loihi 96.03
d1u5ta1145 Vacuolar sorting protein SNF8 {Baker's yeast (Sacc 93.58
d1y5oa1114 RNA polymerase II transcription factor B 73 kDa, T 90.64
>d2caya1 b.55.1.12 (A:1-99,A:252-282) Vacuolar protein sorting protein 36, VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: VPS36 N-terminal domain-like
domain: Vacuolar protein sorting protein 36, VPS36
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.8e-39  Score=263.65  Aligned_cols=129  Identities=19%  Similarity=0.292  Sum_probs=117.0

Q ss_pred             CCCCccccccCCCCeeecCCceEEEeecceeeeeCCCCCCCCCCCcceEEEEeecceEEeeCCC-CCceEEEecCceeee
Q 021304            4 NNFFLPASVTSSGRPVLVPNEVECNLLSNVDIEHDQDDAVSFPPLKSGHFILTTHRLLFLSSSC-SSTAVAIPLSAITHI   82 (314)
Q Consensus         4 ~~~~~~~~~t~sgrpvL~~~E~~l~~~~~V~Ly~g~~k~~~~~~~q~G~l~LTshRIi~~d~~~-~~~s~~lpL~~i~~~   82 (314)
                      |++|+||++|+||||+|.+||.+|+.+++|+||+|++|   ++++++|+||||||||||+|+.+ ...|++|||.+|.++
T Consensus         1 ~~~w~~~~~t~sg~p~L~~~E~~l~~qd~V~Ly~g~~k---~~~~~~G~l~LTshRiI~v~~~~~~~~S~slpL~~i~~~   77 (130)
T d2caya1           1 MEYWHYVETTSSGQPLLREGEKDIFIDQSVGLYHGKSK---ILQRQRGRIFLTSQRIIYIDDAKPTQNSLGLELDDLAYV   77 (130)
T ss_dssp             GGTCEECCBCTTSCBCCCTTCCEEEEEEEEEEEETTEE---CTTCSSEEEEEESSEEEEEESSCHHHHCEEEEGGGEEEE
T ss_pred             CcccchhhcccCCCeEccCCeEEEEEeCCEEEEECCcc---CccccCceEEEEeeEEEEecCCCCceeEEEeEhhheeEe
Confidence            78999999999999999999999999999999999997   88999999999999999999765 457999999999999


Q ss_pred             cccCCccccccCCCceeeeeecCCCCCCCCCCCCCcCCCCccEEEEEEecCCChHhHHHHHHHHHhhcccc
Q 021304           83 FSSKRSLKSVFHSPRFRFQVSATPDNRIFDSDPGRVTGLRSVVITVVVRGKGDWELFLSKMWECWRGRAWA  153 (314)
Q Consensus        83 ~~~~~~lr~~~~s~ki~~~l~~~p~~~~~d~~p~~~~~s~~~~iklSFr~~G~~~~F~~~L~~aL~~k~W~  153 (314)
                      ++.+++++   +||||++++.+++.              ...+|||||| +||+.+|+++|+++|++++|+
T Consensus        78 e~~~~~~~---ss~KI~l~l~~~~~--------------~~~~vklsFr-~gg~~~F~~~~~~~~~~~~~~  130 (130)
T d2caya1          78 NYSSGFLT---RSPRLILFFKDPSS--------------STEFVQLSFR-KSDGVLFSQATERALENILTE  130 (130)
T ss_dssp             EEECSSSS---SSCEEEEEESSCSS--------------TTCCEEEEES-SSCCHHHHHHHHHHHHHHHHC
T ss_pred             EEEccccC---CCCeEEEEeCCCCC--------------CCCEEEEEEc-CCChHHHHHHHHHHHHHHhcC
Confidence            99999866   68999988875432              3589999999 556699999999999999995
>d2hthb1 b.55.1.12 (B:3-131) Vacuolar protein sorting protein 36, VPS36 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u5tb1 a.4.5.54 (B:396-489) Vacuolar protein sorting-associated protein VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3dcxa1 b.55.1.13 (A:9-124) Uncharacterized protein Shew0819 {Shewanella loihica [TaxId: 359303]} Back     information, alignment and structure
>d1u5ta1 a.4.5.54 (A:20-164) Vacuolar sorting protein SNF8 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1y5oa1 b.55.1.9 (A:2-115) RNA polymerase II transcription factor B 73 kDa, TFB1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure