Citrus Sinensis ID: 021317

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310----
Protein Sequence
MLFFCWESPRGVEVFMETYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELSMTRIQQRAASSAPSKIPSA
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHccccccHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHcHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHcHHccHHHHccccHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHccccccHHHHHHHHHHHHHHHcHcccHHHccccccHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccccccccEHEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
mlffcwesprgveVFMETYFEGYARRLNLMGPLWQLSKTRNKVkiatagaippLVELLKFQNGTLRELAAAAILTLsaaapnkpaiaasgaAPLLVQILHSGSVQGRVDAVTALHYLStckensspildatavpplinLLKDCKKYSKFAEKATALLEILSSseegriaitnsdggILTLVETvedgslvsTQHAVGALLSLCQSCRDKYRQLILKegaipgllrltvegTFEAQERARTLLDLLRdtpqekrlSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELSMTRIQQRaassapskipsa
Flexible Loop (DISEMBL)
mlffcwesprgvEVFMETYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCkensspildaTAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLldllrdtpqekrlsssvlEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELSMTRIqqraassapskipsa
Low Complexity Region (SEG)
MLFFCWESPRGVEVFMETYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRElaaaailtlsaaapnkpaiaasgaapLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERArtlldllrdtPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELSMTRIQQRaassapskipsa
Disordered region (IsUnstruct)
*LFFCWESPRGVEVFMETYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLR**********SVLEKIVYDIAARVDG******************************************
Disordered Region (DISOPRED)
MLFF***SPRGVE***************LMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLR*****************Y****************KRLLQDMV**************************
Disordered Region (DISEMBL)
MLFFCWESPRGVEVFMETYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELSM******************
Disordered Region (DISPRO)
MLFFCWESPRGVEVFMETYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELSMTRIQQRAASSAPS*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLFFCWESPRGVEVFMETYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELSMTRIQQRAASSAPSKIPSA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	314	2.2.26 [Sep-21-2011]
O22193	826	U-box domain-containing p	no	no	0.713	0.271	0.382	2e-26
Q8GWV5	760	U-box domain-containing p	no	no	0.643	0.265	0.408	1e-25
Q5XEZ8	707	U-box domain-containing p	no	no	0.633	0.281	0.397	8e-25
Q9C9A6	628	U-box domain-containing p	no	no	0.662	0.331	0.342	1e-19
Q9CAG5	782	U-box domain-containing p	no	no	0.805	0.323	0.310	2e-18
Q8GUG9	612	U-box domain-containing p	no	no	0.656	0.336	0.317	4e-18
Q5VRH9	611	U-box domain-containing p	no	no	0.656	0.337	0.313	1e-17
Q8VZ40	632	U-box domain-containing p	no	no	0.640	0.318	0.374	2e-17
Q9SNC6	660	U-box domain-containing p	no	no	0.640	0.304	0.314	5e-17
Q9ZV31	654	U-box domain-containing p	no	no	0.675	0.324	0.327	5e-16

>sp|O22193|PUB4_ARATH U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3

 Score =  120 bits (300), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/230 (38%), Positives = 130/230 (56%), Gaps = 6/230 (2%)

Query: 19  YFEGYARRLNLMGPLWQLS-KTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLS 77
           Y    A + N +  L  LS    NK  IA AGAI PL+ +L+  +   +E +AA + +LS
Sbjct: 593 YSTDSATQENAVTALLNLSINDNNKKAIADAGAIEPLIHVLENGSSEAKENSAATLFSLS 652

Query: 78  AAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLI 137
               NK  I  SGA   LV +L +G+ +G+ DA TAL  LS  +EN + I+ + AV  LI
Sbjct: 653 VIEENKIKIGQSGAIGPLVDLLGNGTPRGKKDAATALFNLSIHQENKAMIVQSGAVRYLI 712

Query: 138 NLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVG 197
           +L+      +   +KA A+L  L++  EGR AI   +GGI  LVE VE GS    ++A  
Sbjct: 713 DLMDPA---AGMVDKAVAVLANLATIPEGRNAI-GQEGGIPLLVEVVELGSARGKENAAA 768

Query: 198 ALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRD 247
           ALL L  +   ++  ++L+EGA+P L+ L+  GT  A+E+A+ LL   R+
Sbjct: 769 ALLQLSTNS-GRFCNMVLQEGAVPPLVALSQSGTPRAREKAQALLSYFRN 817

Functions as an E3 ubiquitin ligase.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q8GWV5|PUB3_ARATH U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3 PE=2 SV=2

 Score =  117 bits (292), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/208 (40%), Positives = 118/208 (56%), Gaps = 6/208 (2%)

Query: 41  NKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAA-PLLVQIL 99
           NK  I   GAI PLV +L   N   +E +AA++ +LS    N+  I  S AA   LV +L
Sbjct: 547 NKAMIVEVGAIEPLVHVLNTGNDRAKENSAASLFSLSVLQVNRERIGQSNAAIQALVNLL 606

Query: 100 HSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEI 159
             G+ +G+ DA +AL  LS   +N + I+ A AV  L+ LL       +  +KA ALL  
Sbjct: 607 GKGTFRGKKDAASALFNLSITHDNKARIVQAKAVKYLVELLD---PDLEMVDKAVALLAN 663

Query: 160 LSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGA 219
           LS+  EGR AI   +GGI  LVETV+ GS    ++A   LL LC +   K+  L+L+EGA
Sbjct: 664 LSAVGEGRQAIVR-EGGIPLLVETVDLGSQRGKENAASVLLQLCLN-SPKFCTLVLQEGA 721

Query: 220 IPGLLRLTVEGTFEAQERARTLLDLLRD 247
           IP L+ L+  GT  A+E+A+ LL   R+
Sbjct: 722 IPPLVALSQSGTQRAKEKAQQLLSHFRN 749

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5XEZ8|PUB2_ARATH U-box domain-containing protein 2 OS=Arabidopsis thaliana GN=PUB2 PE=2 SV=1

 Score =  114 bits (285), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 83/209 (39%), Positives = 116/209 (55%), Gaps = 10/209 (4%)

Query: 41  NKVKIATAGAIPPLVELLKFQNGTLREL---AAAAILTLSAAAPNKPAIAASGAAPLLVQ 97
           NK  IA +GAI PL+ +LK   G L E    +AA + +LS     K  I  +GA   LV 
Sbjct: 496 NKSLIAESGAIVPLIHVLK--TGYLEEAKANSAATLFSLSVIEEYKTEIGEAGAIEPLVD 553

Query: 98  ILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALL 157
           +L SGS+ G+ DA TAL  LS   EN + +++A AV  L+ L+          EKA  +L
Sbjct: 554 LLGSGSLSGKKDAATALFNLSIHHENKTKVIEAGAVRYLVELMDPA---FGMVEKAVVVL 610

Query: 158 EILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKE 217
             L++  EG+IAI   +GGI  LVE VE GS    ++A  ALL LC +   K+   +++E
Sbjct: 611 ANLATVREGKIAI-GEEGGIPVLVEVVELGSARGKENATAALLQLC-THSPKFCNNVIRE 668

Query: 218 GAIPGLLRLTVEGTFEAQERARTLLDLLR 246
           G IP L+ LT  GT   +E+A+ LL   +
Sbjct: 669 GVIPPLVALTKSGTARGKEKAQNLLKYFK 697

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9C9A6|PUB10_ARATH U-box domain-containing protein 10 OS=Arabidopsis thaliana GN=PUB10 PE=2 SV=1

 Score = 97.4 bits (241), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/213 (34%), Positives = 120/213 (56%), Gaps = 5/213 (2%)

Query: 40  RNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQIL 99
            NK  I  AGA+  +V +L+  +   RE AAA + +LS A  NK  I ASGA   LV +L
Sbjct: 416 HNKELIMLAGAVTSIVLVLRAGSMEARENAAATLFSLSLADENKIIIGASGAIMALVDLL 475

Query: 100 HSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEI 159
             GSV+G+ DA TAL  L   + N    + A  V PL+ +L D     + A++A  +L +
Sbjct: 476 QYGSVRGKKDAATALFNLCIYQGNKGRAVRAGIVKPLVKMLTDSSS-ERMADEALTILSV 534

Query: 160 LSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQL-ILKEG 218
           L+S++  + AI  ++  I  L++ ++     + ++A   LL LC+  RD  + + I + G
Sbjct: 535 LASNQVAKTAILRAN-AIPPLIDCLQKDQPRNRENAAAILLCLCK--RDTEKLISIGRLG 591

Query: 219 AIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE 251
           A+  L+ L+ +GT  A+ +A +LL+LLR + ++
Sbjct: 592 AVVPLMELSRDGTERAKRKANSLLELLRKSSRK 624

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9CAG5|PUB7_ARATH U-box domain-containing protein 7 OS=Arabidopsis thaliana GN=PUB7 PE=2 SV=1

 Score = 93.2 bits (230), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/274 (31%), Positives = 138/274 (50%), Gaps = 21/274 (7%)

Query: 36  LSKTRNKVKIATAGAIPPLVELLKF--QNGTLRELAAAAILTLSAAAPNKPAIAASGAAP 93
           ++  RNK  + T+G I  L +++     +G+    A A  L LS     K  I +S A P
Sbjct: 499 VNNNRNKELMLTSGVIRLLEKMISSAESHGS----ATALYLNLSCLDEAKSVIGSSQAVP 554

Query: 94  LLVQILHSG-SVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEK 152
            LVQ+L      Q ++DA+ AL+ LST   N   +L +  +  L  LL    + + + EK
Sbjct: 555 FLVQLLQKEIETQCKLDALHALYNLSTYSPNIPALLSSNIIKSLQGLLASTGE-NLWIEK 613

Query: 153 ATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQ 212
           + A+L  L+SS+EG+    +S G I +L   ++ G     + AV  LL LC   R+   Q
Sbjct: 614 SLAVLLNLASSQEGKDEAVSSQGMISSLATVLDMGDTTEQEQAVSCLLILCNG-RESCIQ 672

Query: 213 LILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAAR--- 269
           ++L+EG IP L+ ++V GT   +E+++ LL L R+  Q++   SS  ++      AR   
Sbjct: 673 MVLQEGVIPSLVSISVNGTPRGREKSQKLLMLFREERQQRDQPSSNRDEPPQKEPARKSL 732

Query: 270 -----VDGADKAAETAKRLLQDMVQRSMELSMTR 298
                V G+  A+ +    +QD   R +  SM+R
Sbjct: 733 SAPLSVHGSTPASAS----VQDYEPRVLSKSMSR 762

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8GUG9|PUB11_ARATH U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11 PE=2 SV=2

 Score = 92.4 bits (228), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 116/211 (54%), Gaps = 5/211 (2%)

Query: 41  NKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILH 100
           NK  I  AGA+  +V++L+      RE AAA + +LS A  NK  I  SGA P LV +L 
Sbjct: 406 NKELIMFAGAVTSIVQVLRAGTMEARENAAATLFSLSLADENKIIIGGSGAIPALVDLLE 465

Query: 101 SGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEIL 160
           +G+ +G+ DA TAL  L     N    + A  V  L+ +L D  ++ +  ++A  +L +L
Sbjct: 466 NGTPRGKKDAATALFNLCIYHGNKGRAVRAGIVTALVKMLSDSTRH-RMVDEALTILSVL 524

Query: 161 SSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLIL-KEGA 219
           +++++ + AI  ++  +  L+  ++     + ++A   LLSLC+  RD  + + + + GA
Sbjct: 525 ANNQDAKSAIVKANT-LPALIGILQTDQTRNRENAAAILLSLCK--RDTEKLITIGRLGA 581

Query: 220 IPGLLRLTVEGTFEAQERARTLLDLLRDTPQ 250
           +  L+ L+  GT   + +A +LL+LLR   Q
Sbjct: 582 VVPLMDLSKNGTERGKRKAISLLELLRKACQ 612

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5VRH9|PUB12_ORYSJ U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=PUB12 PE=2 SV=1

 Score = 90.5 bits (223), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 115/249 (46%), Gaps = 43/249 (17%)

Query: 38  KTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQ 97
              N++ IA AGAIP LV LL   +   +E A  A+L LS    NK +I  S A P +V+
Sbjct: 354 NVNNRICIAEAGAIPLLVNLLSSSDPRTQEHAVTALLNLSIHENNKASIVDSHAIPKIVE 413

Query: 98  ILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSK--------- 148
           +L +GS++ R +A   L  LS   EN   I  A A+PPLINLL D     K         
Sbjct: 414 VLKTGSMETRENAAATLFSLSVVDENKVTIGAAGAIPPLINLLCDGSPRGKKDAATAIFN 473

Query: 149 ------------------------------FAEKATALLEILSSSEEGRIAITNSDGGIL 178
                                           ++A +LL IL+ + EG+I I  S+  I 
Sbjct: 474 LCIYQGNKVRAVKAGIVIHLMNFLVDPTGGMIDEALSLLSILAGNPEGKIVIARSE-PIP 532

Query: 179 TLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLR-LTVEGTFEAQER 237
            LVE ++ GS  + ++A   L  LC +  D  + L  K   +   L+ L+  GT  A+ +
Sbjct: 533 PLVEVIKTGSPRNRENAAAILWLLCSA--DTEQTLAAKAAGVEDALKELSETGTDRAKRK 590

Query: 238 ARTLLDLLR 246
           A ++L+L+ 
Sbjct: 591 ASSILELMH 599

Possesses E3 ubiquitin-protein ligase in vitro.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8VZ40|PUB14_ARATH U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14 PE=1 SV=1

 Score = 90.5 bits (223), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/211 (37%), Positives = 117/211 (55%), Gaps = 10/211 (4%)

Query: 41  NKVKIATAGAIPPLVELLKFQNGTL--RELAAAAILTLSAAAPNKPAIAASGAAPLLVQI 98
           NK  I  AGAI  +VE+LK  NG++  RE AAA + +LS    NK AI A+GA   L+ +
Sbjct: 420 NKGAIVDAGAITDIVEVLK--NGSMEARENAAATLFSLSVIDENKVAIGAAGAIQALISL 477

Query: 99  LHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLE 158
           L  G+ +G+ DA TA+  L   + N S  +    V PL  LLKD        ++A A+L 
Sbjct: 478 LEEGTRRGKKDAATAIFNLCIYQGNKSRAVKGGIVDPLTRLLKDAG--GGMVDEALAILA 535

Query: 159 ILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKE- 217
           ILS+++EG+ AI  ++  I  LVE +  GS  + ++A   L  LC    ++    + +E 
Sbjct: 536 ILSTNQEGKTAIAEAE-SIPVLVEIIRTGSPRNRENAAAILWYLCIGNIERLN--VAREV 592

Query: 218 GAIPGLLRLTVEGTFEAQERARTLLDLLRDT 248
           GA   L  LT  GT  A+ +A +LL+L++ T
Sbjct: 593 GADVALKELTENGTDRAKRKAASLLELIQQT 623

Functions as an E3 ubiquitin ligase with specific E2 ubiquitin-conjugating enzymes. Undergoes auto-ubiquitination.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1

 Score = 88.6 bits (218), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 112/242 (46%), Gaps = 41/242 (16%)

Query: 41  NKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILH 100
           N+V IA AGAIP LV LL   +  ++E +  A+L LS    NK AI ++GA P +VQ+L 
Sbjct: 386 NRVAIAEAGAIPLLVGLLSTPDSRIQEHSVTALLNLSICENNKGAIVSAGAIPGIVQVLK 445

Query: 101 SGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSK------------ 148
            GS++ R +A   L  LS   EN   I    A+PPL+ LL +  +  K            
Sbjct: 446 KGSMEARENAAATLFSLSVIDENKVTIGALGAIPPLVVLLNEGTQRGKKDAATALFNLCI 505

Query: 149 ---------------------------FAEKATALLEILSSSEEGRIAITNSDGGILTLV 181
                                        ++A A+L ILSS  EG+  I +SD  + +LV
Sbjct: 506 YQGNKGKAIRAGVIPTLTRLLTEPGSGMVDEALAILAILSSHPEGKAIIGSSD-AVPSLV 564

Query: 182 ETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTL 241
           E +  GS  + ++A   L+ LC S   ++     K G +  L+ L   GT   + +A  L
Sbjct: 565 EFIRTGSPRNRENAAAVLVHLC-SGDPQHLVEAQKLGLMGPLIDLAGNGTDRGKRKAAQL 623

Query: 242 LD 243
           L+
Sbjct: 624 LE 625

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9ZV31|PUB12_ARATH U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12 PE=2 SV=1

 Score = 85.5 bits (210), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 118/226 (52%), Gaps = 14/226 (6%)

Query: 41  NKVKIA-TAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQIL 99
           NK KI  ++GA+P +V +L+  +   RE AAA + +LS    NK  I A+GA P LV +L
Sbjct: 431 NKGKIVYSSGAVPGIVHVLQKGSMEARENAAATLFSLSVIDENKVTIGAAGAIPPLVTLL 490

Query: 100 HSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEI 159
             GS +G+ DA TAL  L   + N    + A  VP L+ LL + +  S   +++ ++L I
Sbjct: 491 SEGSQRGKKDAATALFNLCIFQGNKGKAVRAGLVPVLMRLLTEPE--SGMVDESLSILAI 548

Query: 160 LSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGA 219
           LSS  +G+  +  +D  +  LV+ +  GS  + +++   L+ LC      + Q  L E  
Sbjct: 549 LSSHPDGKSEVGAAD-AVPVLVDFIRSGSPRNKENSAAVLVHLC-----SWNQQHLIEAQ 602

Query: 220 IPGLLRLTVE----GTFEAQERARTLLDLL-RDTPQEKRLSSSVLE 260
             G++ L +E    GT   + +A  LL+   R   Q+K+ S   LE
Sbjct: 603 KLGIMDLLIEMAENGTDRGKRKAAQLLNRFSRFNDQQKQHSGLGLE 648

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	314
224129230	379	predicted protein [Populus trichocarpa]	0.872	0.722	0.864	1e-132
296085056	367	unnamed protein product [Vitis vinifera]	0.869	0.743	0.835	1e-126
225447490	376	PREDICTED: U-box domain-containing prote	0.869	0.726	0.835	1e-126
255582882	391	Vacuolar protein, putative [Ricinus comm	0.869	0.698	0.828	1e-122
356553040	379	PREDICTED: U-box domain-containing prote	0.869	0.720	0.832	1e-121
356500835	381	PREDICTED: U-box domain-containing prote	0.866	0.713	0.824	1e-120
357490509	350	U-box domain-containing protein [Medicag	0.770	0.691	0.790	1e-103
15235456	402	armadillo/beta-catenin-like repeat-conta	0.853	0.666	0.706	1e-101
297790862	394	armadillo/beta-catenin repeat family pro	0.866	0.690	0.692	2e-99
255637130	244	unknown [Glycine max]	0.694	0.893	0.836	2e-95

>gi|224129230|ref|XP_002320533.1| predicted protein [Populus trichocarpa] gi|222861306|gb|EEE98848.1| predicted protein [Populus trichocarpa]

 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 237/274 (86%), Positives = 254/274 (92%)

Query: 40  RNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQIL 99
           RNKVKI TAGA+PPLVELLK QNG+LRELAAA+ILTLSAA PNKP IAASGAAPLLVQIL
Sbjct: 105 RNKVKIVTAGAVPPLVELLKLQNGSLRELAAASILTLSAAEPNKPIIAASGAAPLLVQIL 164

Query: 100 HSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEI 159
            SGSVQG+VDAVT LH LS+C EN  PI+D  AV PLINLLK+CKKYSKFAEKATALLEI
Sbjct: 165 SSGSVQGKVDAVTVLHNLSSCAENIHPIVDGKAVSPLINLLKECKKYSKFAEKATALLEI 224

Query: 160 LSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGA 219
           LS+SEEGRIAIT+SDGGILTLVETVEDGSLVST+HAVGALLSLCQSCR+KYR+LILKEGA
Sbjct: 225 LSNSEEGRIAITDSDGGILTLVETVEDGSLVSTEHAVGALLSLCQSCREKYRELILKEGA 284

Query: 220 IPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAET 279
           IPGLLRLTVEGT +AQ+RARTLLDLLRDTPQEKRLSSSVLE+IVY+IA RVDG+DKAAET
Sbjct: 285 IPGLLRLTVEGTSKAQDRARTLLDLLRDTPQEKRLSSSVLERIVYNIATRVDGSDKAAET 344

Query: 280 AKRLLQDMVQRSMELSMTRIQQRAASSAPSKIPS 313
           AKRLLQDMVQRSMELSM  IQ RAAS  PSKIPS
Sbjct: 345 AKRLLQDMVQRSMELSMNSIQHRAASCTPSKIPS 378

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085056|emb|CBI28471.3| unnamed protein product [Vitis vinifera]

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 228/273 (83%), Positives = 251/273 (91%)

Query: 40  RNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQIL 99
           RNKV+I T+GA+PPLVELL+FQNG LRELA AAILTLSAAAPNK  IAASGAAPLLVQIL
Sbjct: 93  RNKVRIVTSGAVPPLVELLEFQNGRLRELAIAAILTLSAAAPNKLTIAASGAAPLLVQIL 152

Query: 100 HSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEI 159
            SGSVQG+VDAVTALHYLS+C E ++P++DA AV PLI LLKDCKKYSKFAEK TALLEI
Sbjct: 153 SSGSVQGKVDAVTALHYLSSCTEATTPVIDARAVSPLIKLLKDCKKYSKFAEKTTALLEI 212

Query: 160 LSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGA 219
           LS SEEG+ AI+NSDGGILTLVET+EDGSLVST+HAVGALLSLCQSCR+KYR+LILKEGA
Sbjct: 213 LSKSEEGQTAISNSDGGILTLVETIEDGSLVSTEHAVGALLSLCQSCRNKYRELILKEGA 272

Query: 220 IPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAET 279
           IPGLLRLTVEGT EAQERAR LLDLLRD+P EKRL+SSVLE+I YDIAARVDG+DKAAET
Sbjct: 273 IPGLLRLTVEGTPEAQERARMLLDLLRDSPPEKRLASSVLERIAYDIAARVDGSDKAAET 332

Query: 280 AKRLLQDMVQRSMELSMTRIQQRAASSAPSKIP 312
           AKRLLQDMV RSMELS+ RIQ+RAAS  PS+IP
Sbjct: 333 AKRLLQDMVHRSMELSLGRIQRRAASCTPSQIP 365

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447490|ref|XP_002264882.1| PREDICTED: U-box domain-containing protein 4-like [Vitis vinifera]

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 228/273 (83%), Positives = 251/273 (91%)

Query: 40  RNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQIL 99
           RNKV+I T+GA+PPLVELL+FQNG LRELA AAILTLSAAAPNK  IAASGAAPLLVQIL
Sbjct: 102 RNKVRIVTSGAVPPLVELLEFQNGRLRELAIAAILTLSAAAPNKLTIAASGAAPLLVQIL 161

Query: 100 HSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEI 159
            SGSVQG+VDAVTALHYLS+C E ++P++DA AV PLI LLKDCKKYSKFAEK TALLEI
Sbjct: 162 SSGSVQGKVDAVTALHYLSSCTEATTPVIDARAVSPLIKLLKDCKKYSKFAEKTTALLEI 221

Query: 160 LSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGA 219
           LS SEEG+ AI+NSDGGILTLVET+EDGSLVST+HAVGALLSLCQSCR+KYR+LILKEGA
Sbjct: 222 LSKSEEGQTAISNSDGGILTLVETIEDGSLVSTEHAVGALLSLCQSCRNKYRELILKEGA 281

Query: 220 IPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAET 279
           IPGLLRLTVEGT EAQERAR LLDLLRD+P EKRL+SSVLE+I YDIAARVDG+DKAAET
Sbjct: 282 IPGLLRLTVEGTPEAQERARMLLDLLRDSPPEKRLASSVLERIAYDIAARVDGSDKAAET 341

Query: 280 AKRLLQDMVQRSMELSMTRIQQRAASSAPSKIP 312
           AKRLLQDMV RSMELS+ RIQ+RAAS  PS+IP
Sbjct: 342 AKRLLQDMVHRSMELSLGRIQRRAASCTPSQIP 374

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582882|ref|XP_002532213.1| Vacuolar protein, putative [Ricinus communis] gi|223528109|gb|EEF30182.1| Vacuolar protein, putative [Ricinus communis]

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 227/274 (82%), Positives = 248/274 (90%), Gaps = 1/274 (0%)

Query: 40  RNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQIL 99
           RNKVKI TAGA+PPLVELLKFQNG LREL AAAILTLSAA PNK  IAASGAAPLL+QIL
Sbjct: 118 RNKVKIVTAGAVPPLVELLKFQNGGLRELGAAAILTLSAAEPNKQTIAASGAAPLLIQIL 177

Query: 100 HSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEI 159
           +SGSVQG+VDAVTALH LSTC +NS PI+DA AV PLI LLK+CKKYSKFAEKATALLEI
Sbjct: 178 YSGSVQGKVDAVTALHNLSTCNKNSHPIVDAKAVSPLIKLLKECKKYSKFAEKATALLEI 237

Query: 160 LSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGA 219
           +S+SEEGRIAIT SDGGILTLVETVEDGSLVST++AVG LL+LCQS RDKYR+LILKEGA
Sbjct: 238 ISNSEEGRIAITESDGGILTLVETVEDGSLVSTEYAVGILLTLCQSNRDKYRELILKEGA 297

Query: 220 IPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAET 279
           IPGLL+LTVEGT EAQ+RARTLLDLLRDTP EK+L+S+VLEKIVYDIAARVDG+DKAAET
Sbjct: 298 IPGLLQLTVEGTSEAQKRARTLLDLLRDTP-EKKLASAVLEKIVYDIAARVDGSDKAAET 356

Query: 280 AKRLLQDMVQRSMELSMTRIQQRAASSAPSKIPS 313
           AK+LLQDMVQRSMELS  RIQ   A+   SKI S
Sbjct: 357 AKQLLQDMVQRSMELSRGRIQHTTAACPSSKISS 390

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553040|ref|XP_003544866.1| PREDICTED: U-box domain-containing protein 4-like [Glycine max]

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 228/274 (83%), Positives = 245/274 (89%), Gaps = 1/274 (0%)

Query: 40  RNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQIL 99
           RNKVKI T GA+PPLVELLK QN ++RELA AAILTLSAAA NKP IAASGAAPLLVQIL
Sbjct: 106 RNKVKIVTDGAMPPLVELLKMQNSSIRELATAAILTLSAAASNKPIIAASGAAPLLVQIL 165

Query: 100 HSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEI 159
            SGSVQG+VDAVTALH LST   NS  +LDA+AV PL+NLLK+CKKYSKFAEKATALLEI
Sbjct: 166 KSGSVQGKVDAVTALHNLSTSIANSIELLDASAVFPLLNLLKECKKYSKFAEKATALLEI 225

Query: 160 LSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGA 219
           LS+SEEGR AI+ +DGGILTLVETVEDGSLVST+HAVG LLSLC+SCRDKYR+LILKEGA
Sbjct: 226 LSNSEEGRTAISIADGGILTLVETVEDGSLVSTEHAVGTLLSLCRSCRDKYRELILKEGA 285

Query: 220 IPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAET 279
           IPGLLRLTVEGT EAQ+RAR LLDLLRD+P EKRL+SSVLEKIVYDIA RVDGADKAAET
Sbjct: 286 IPGLLRLTVEGTAEAQDRARVLLDLLRDSPPEKRLTSSVLEKIVYDIAERVDGADKAAET 345

Query: 280 AKRLLQDMVQRSMELSMTRIQQRAASSAPSKIPS 313
           AKRLLQDMVQRSME SM  IQ RAAS  PS IPS
Sbjct: 346 AKRLLQDMVQRSMEHSMKCIQHRAASCTPS-IPS 378

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500835|ref|XP_003519236.1| PREDICTED: U-box domain-containing protein 3-like [Glycine max]

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 226/274 (82%), Positives = 242/274 (88%), Gaps = 2/274 (0%)

Query: 40  RNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQIL 99
           RNKVKI T GA+PPLVELLK QN  +RELA AAILTLSAA  NKP IAASGA PLLVQIL
Sbjct: 109 RNKVKIVTDGAMPPLVELLKMQNSGIRELATAAILTLSAATSNKPIIAASGAGPLLVQIL 168

Query: 100 HSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEI 159
            SGSVQG+VDAVTALH LST  ENS  +LDA+AV PL+NLLK+CKKYSKFAEKATALLEI
Sbjct: 169 KSGSVQGKVDAVTALHNLSTGIENSIELLDASAVFPLLNLLKECKKYSKFAEKATALLEI 228

Query: 160 LSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGA 219
           LS+SEEGR AI+ +DGGILTLVETVEDGSLVST+HAVG LLSLC+SCRDKYR+LILKEGA
Sbjct: 229 LSNSEEGRTAISIADGGILTLVETVEDGSLVSTEHAVGTLLSLCRSCRDKYRELILKEGA 288

Query: 220 IPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAET 279
           IPGLLRLTVEGT EAQ+RAR LLDLLRD+P EKRL+SSVLEKIVYDIA RVDGADKAAET
Sbjct: 289 IPGLLRLTVEGTAEAQDRARVLLDLLRDSPPEKRLTSSVLEKIVYDIAERVDGADKAAET 348

Query: 280 AKRLLQDMVQRSMELSMTRIQQRAASSAPSKIPS 313
           AKRLLQDMVQRSME SM  IQ RAAS  P  IPS
Sbjct: 349 AKRLLQDMVQRSMEHSMKCIQHRAASCTP--IPS 380

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357490509|ref|XP_003615542.1| U-box domain-containing protein [Medicago truncatula] gi|355516877|gb|AES98500.1| U-box domain-containing protein [Medicago truncatula]

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 193/244 (79%), Positives = 215/244 (88%), Gaps = 2/244 (0%)

Query: 40  RNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQIL 99
           RNKV+I TAGA+PPLVELLK Q+  +RELA AAILTLS+AAPNKP IAASGAAPLLVQIL
Sbjct: 107 RNKVQIVTAGAVPPLVELLKMQSNGIRELATAAILTLSSAAPNKPIIAASGAAPLLVQIL 166

Query: 100 HSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEI 159
            SGSVQG+VD VT LH LS    N   +LDA+AV PLINLLKDCKKYS FAEKAT+LLEI
Sbjct: 167 KSGSVQGKVDTVTTLHNLSYSTVNPIELLDASAVSPLINLLKDCKKYSNFAEKATSLLEI 226

Query: 160 LSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGA 219
           LS+SEEGRIAI+ ++GGILTLVETVEDGSLVST++AVGALLSLC SCRDKYR+LILKEGA
Sbjct: 227 LSNSEEGRIAISLTEGGILTLVETVEDGSLVSTEYAVGALLSLCLSCRDKYRELILKEGA 286

Query: 220 IPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVD--GADKAA 277
           IPGLLRLTVEGT EAQ+RAR LLDLLRD+P+EKRL SSVLEKIVYD+A R+D    DKAA
Sbjct: 287 IPGLLRLTVEGTVEAQDRARMLLDLLRDSPKEKRLDSSVLEKIVYDMAERLDRVSVDKAA 346

Query: 278 ETAK 281
           ET+K
Sbjct: 347 ETSK 350

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15235456|ref|NP_193007.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] gi|4586247|emb|CAB40988.1| putative protein [Arabidopsis thaliana] gi|7267972|emb|CAB78313.1| putative protein [Arabidopsis thaliana] gi|110737831|dbj|BAF00854.1| hypothetical protein [Arabidopsis thaliana] gi|111074334|gb|ABH04540.1| At4g12710 [Arabidopsis thaliana] gi|332657766|gb|AEE83166.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana]

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/269 (70%), Positives = 227/269 (84%), Gaps = 1/269 (0%)

Query: 40  RNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQIL 99
           RNK++I  AGA+PPL+++LK  N +LRELA AAILTLSAA  NK  I +SG  PLL+Q+L
Sbjct: 123 RNKIEIVKAGAVPPLIQILKLHNASLRELATAAILTLSAAPANKAMIISSGVPPLLIQML 182

Query: 100 HSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLE- 158
            SG+VQG+VDAVTALH LS CKE S+PILDA AV PLI+LLK+CKK+SKFAEKATAL+E 
Sbjct: 183 SSGTVQGKVDAVTALHNLSACKEYSAPILDAKAVYPLIHLLKECKKHSKFAEKATALVEM 242

Query: 159 ILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEG 218
           ILS SE+GR AIT+ + GILTLVETVEDGS +S +HAVGALLSLC+S RDKYR+LILKEG
Sbjct: 243 ILSHSEDGRNAITSCEDGILTLVETVEDGSPLSIEHAVGALLSLCRSDRDKYRKLILKEG 302

Query: 219 AIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAE 278
           AIPGLL  TV+GT ++++RAR LLDLLR+TP+EK ++   LEKIVY IA +VDGA+KAAE
Sbjct: 303 AIPGLLSSTVDGTSKSRDRARVLLDLLRETPREKEMTPLTLEKIVYGIAVQVDGAEKAAE 362

Query: 279 TAKRLLQDMVQRSMELSMTRIQQRAASSA 307
           TAK+LLQDMV RSMELSM  IQ +AAS A
Sbjct: 363 TAKKLLQDMVHRSMELSMKSIQHKAASCA 391

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297790862|ref|XP_002863316.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297309150|gb|EFH39575.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 189/273 (69%), Positives = 226/273 (82%), Gaps = 1/273 (0%)

Query: 40  RNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQIL 99
           RNK++I  AGA+PPL+++LK  N +LRELA AAILTLSAA  NK  I  SG  PLLVQ+L
Sbjct: 122 RNKIEIVKAGAVPPLIQILKLHNASLRELATAAILTLSAAPANKATIITSGVPPLLVQML 181

Query: 100 HSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLE- 158
            SG+VQG+VDAVTALH LS CKE S+ ILDA AV PLI+LLK+CKK+SKFAEKATAL+E 
Sbjct: 182 SSGTVQGKVDAVTALHNLSACKEYSASILDAKAVSPLIHLLKECKKHSKFAEKATALVEM 241

Query: 159 ILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEG 218
           ILS SE+GR AIT+ + GILTLVETVEDGS +S +HAVGALLSLC+S RDKYR+LILKEG
Sbjct: 242 ILSHSEDGRNAITSCEDGILTLVETVEDGSPLSIEHAVGALLSLCRSDRDKYRKLILKEG 301

Query: 219 AIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAE 278
           AIPGLL  TVEGT ++++RAR LLDLLR+T +EK ++  +LEKIVY IA +VDGA+KAAE
Sbjct: 302 AIPGLLSSTVEGTSKSRDRARVLLDLLRETSREKEMAPLILEKIVYGIAVQVDGAEKAAE 361

Query: 279 TAKRLLQDMVQRSMELSMTRIQQRAASSAPSKI 311
           TAK+LLQ+MV RSMELSM  IQ +A  S+ S I
Sbjct: 362 TAKKLLQNMVHRSMELSMKSIQHKANISSKSNI 394

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637130|gb|ACU18896.1| unknown [Glycine max]

 Score =  354 bits (909), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 184/220 (83%), Positives = 198/220 (90%), Gaps = 2/220 (0%)

Query: 94  LLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKA 153
           LLVQIL SGSVQG+VDAVTALH LST  ENS  +LDA+AV PL+NLLK+CKKYSKFAEKA
Sbjct: 26  LLVQILKSGSVQGKVDAVTALHNLSTGIENSIELLDASAVLPLLNLLKECKKYSKFAEKA 85

Query: 154 TALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQL 213
           TALLEILS+SEEGR AI+ +DGGILTLVETVEDGSLVST+HAVG LLSLC+SCRDKYR+L
Sbjct: 86  TALLEILSNSEEGRTAISIADGGILTLVETVEDGSLVSTEHAVGTLLSLCRSCRDKYREL 145

Query: 214 ILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGA 273
           ILKEGAIPGLLRLTVEGT EAQ+RAR LLDLLRD+P EKRL+SSVLEKIVYDIA RVDGA
Sbjct: 146 ILKEGAIPGLLRLTVEGTAEAQDRARVLLDLLRDSPPEKRLTSSVLEKIVYDIAERVDGA 205

Query: 274 DKAAETAKRLLQDMVQRSMELSMTRIQQRAASSAPSKIPS 313
           DKAAETAKRLLQDMVQRSME SM  IQ RAAS  P  IPS
Sbjct: 206 DKAAETAKRLLQDMVQRSMEHSMKCIQHRAASCTP--IPS 243

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	314
TAIR|locus:2135788	402	AT4G12710 [Arabidopsis thalian	0.888	0.694	0.587	1.9e-76
TAIR|locus:2099634	408	AT3G03440 "AT3G03440" [Arabido	0.834	0.642	0.392	3.9e-44
TAIR|locus:2145653	327	AT5G14510 [Arabidopsis thalian	0.777	0.746	0.307	1.6e-24
TAIR|locus:2096687	355	AT3G01400 [Arabidopsis thalian	0.617	0.546	0.333	2.4e-21
TAIR|locus:2130699	472	AT4G16490 "AT4G16490" [Arabido	0.678	0.451	0.327	5.7e-21
TAIR|locus:2158252	707	AT5G67340 [Arabidopsis thalian	0.608	0.270	0.363	3.4e-20
TAIR|locus:2102455	760	AT3G54790 [Arabidopsis thalian	0.614	0.253	0.366	6.3e-20
TAIR|locus:2045334	829	PUB4 "plant U-box 4" [Arabidop	0.684	0.259	0.339	7.3e-20
TAIR|locus:2178818	357	AT5G58680 "AT5G58680" [Arabido	0.582	0.512	0.294	8.2e-18
TAIR|locus:2162276	660	PUB15 "Plant U-Box 15" [Arabid	0.617	0.293	0.328	5.9e-16

TAIR|locus:2135788 AT4G12710 [Arabidopsis thaliana (taxid:3702)]

 Score = 770 (276.1 bits), Expect = 1.9e-76, P = 1.9e-76
 Identities = 165/281 (58%), Positives = 203/281 (72%)

Query:    24 ARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLREXXXXXXXXXXXXXXX 82
             AR  +L+  L   +   RNK++I  AGA+PPL+++LK  N +LRE               
Sbjct:   106 ARHASLLALLNLAVRNERNKIEIVKAGAVPPLIQILKLHNASLRELATAAILTLSAAPAN 165

Query:    83 XXXXXXXXXXXLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKD 142
                        LL+Q+L SG+VQG+VDAVTALH LS CKE S+PILDA AV PLI+LLK+
Sbjct:   166 KAMIISSGVPPLLIQMLSSGTVQGKVDAVTALHNLSACKEYSAPILDAKAVYPLIHLLKE 225

Query:   143 CKKYSKFAEKATALLE-ILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLS 201
             CKK+SKFAEKATAL+E ILS SE+GR AIT+ + GILTLVETVEDGS +S +HAVGALLS
Sbjct:   226 CKKHSKFAEKATALVEMILSHSEDGRNAITSCEDGILTLVETVEDGSPLSIEHAVGALLS 285

Query:   202 LCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERAXXXXXXXXXXPQEKRLSSSVLEK 261
             LC+S RDKYR+LILKEGAIPGLL  TV+GT ++++RA          P+EK ++   LEK
Sbjct:   286 LCRSDRDKYRKLILKEGAIPGLLSSTVDGTSKSRDRARVLLDLLRETPREKEMTPLTLEK 345

Query:   262 IVYDIAARVDGADKAAETAKRLLQDMVQRSMELSMTRIQQR 302
             IVY IA +VDGA+KAAETAK+LLQDMV RSMELSM  IQ +
Sbjct:   346 IVYGIAVQVDGAEKAAETAKKLLQDMVHRSMELSMKSIQHK 386

GO:0005737 "cytoplasm" evidence=ISM

GO:0005871 "kinesin complex" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0019894 "kinesin binding" evidence=IEA

TAIR|locus:2099634 AT3G03440 "AT3G03440" [Arabidopsis thaliana (taxid:3702)]

 Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
 Identities = 104/265 (39%), Positives = 154/265 (58%)

Query:    40 RNKVKIATAGAIPPLVELLKFQNGTLREXXXXXXXXXXXXXXXXXXXXXXXXXXLLVQIL 99
             +NKV I  AGA+ P++  L+  + TL+E                          LLV+++
Sbjct:   138 KNKVSIIEAGALEPIINFLQSNSPTLQEYASASLLTLSASANNKPIIGANGVVPLLVKVI 197

Query:   100 HSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEI 159
               GS Q + DAV AL  LST  +N S IL    + P++NLLK  KK SK +EK  +L+E 
Sbjct:   198 KHGSPQAKADAVMALSNLSTLPDNLSMILATKPLSPILNLLKSSKKSSKTSEKCCSLIEA 257

Query:   160 LS-SSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEG 218
             L  S EE R  + + +GG+L +VE +E+GSL + +HAVG LL+LCQS R KYR+ IL+EG
Sbjct:   258 LMVSGEEARTGLVSDEGGVLAVVEVLENGSLQAREHAVGVLLTLCQSDRSKYREPILREG 317

Query:   219 AIPGLLRLTVEGTFEAQERAXXXXXXXXXXPQEK-RLSSSVLEKIVYDIAARVDGADKAA 277
              IPGLL LTV+GT +++ +A             +  +    +E IV  + + +DG D++ 
Sbjct:   318 VIPGLLELTVQGTSKSRIKAQRLLCLLRNSESPRSEVQPDTIENIVSSLISHIDGDDQSG 377

Query:   278 ETAKRLLQDMVQRSMELSMTRIQQR 302
             + AK++L +MVQ SME S+  +Q+R
Sbjct:   378 K-AKKMLAEMVQVSMEKSLRHLQER 401

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2145653 AT5G14510 [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 80/260 (30%), Positives = 137/260 (52%)

Query:    40 RNKVKIATAGAIPPLVELLKFQNG-TLREXXXXXXXXXXXXXXXXXXXXXXXXXXLLVQI 98
             RNKV+I  +GA+P L+E+L+ +    + E                          LLV +
Sbjct:    72 RNKVRIVKSGAVPTLLEILQSETKMVVLELAMAFLLILSSCNKNKVKMASTRLVQLLVGL 131

Query:    99 --LHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVP-PLINLLKDCKKYSKFAEKATA 155
               L   ++Q +VD +  L  LST  +   P++ A+  P  L+ ++  C K S+ A+KA A
Sbjct:   132 IGLDRLTIQAKVDGIATLQNLSTLHQ-IVPLVIASGAPYALLQVINFCDKSSELADKAVA 190

Query:   156 LLE-ILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLI 214
             LLE I+S S E   ++++  G I  LVE +E+GS    +HAVG LL +C + R+  R +I
Sbjct:   191 LLENIISHSPE---SVSSIGGAIGVLVEAIEEGSAQCKEHAVGILLGICNNDRETNRGMI 247

Query:   215 LKEGAIPGLLRLTVEGTFEAQERAXXXXXXXXXXP----QEKRLSSSVLEKIVYDIAARV 270
             L+EG +PGLL+++V+GT  A+E A               + K+    ++E+I+ +I    
Sbjct:   248 LREGVMPGLLQVSVDGTRRAKEMARELLLLLRDCSGYVIKNKQSKIEIVEQIMREIDQ-- 305

Query:   271 DGADKAAETAKRLLQDMVQR 290
             +G ++   T  +L+++M+ +
Sbjct:   306 EG-ERIPGTMLKLVEEMISK 324

GO:0005871 "kinesin complex" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0019894 "kinesin binding" evidence=IEA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2096687 AT3G01400 [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 66/198 (33%), Positives = 99/198 (50%)

Query:    41 NKVKIATAGAIPPLVELLKFQNGTLREXXXXXXXXXXXXXXXXXXXXXXXXXXLLVQILH 100
             NK  IA++GAI PLV  LK    T +E                          LLV +L 
Sbjct:   138 NKESIASSGAIKPLVRALKMGTPTAKENAACALLRLSQIEENKVAIGRSGAIPLLVNLLE 197

Query:   101 SGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEIL 160
             +G  + + DA TAL+ L + KEN    + +  + PL+ L+ D    S   +K+  ++ +L
Sbjct:   198 TGGFRAKKDASTALYSLCSAKENKIRAVQSGIMKPLVELMADFG--SNMVDKSAFVMSLL 255

Query:   161 SSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAI 220
              S  E + AI   +GG+  LVE VE G+    + AV  LL LC+     YR ++ +EGAI
Sbjct:   256 MSVPESKPAIVE-EGGVPVLVEIVEVGTQRQKEMAVSILLQLCEESV-VYRTMVAREGAI 313

Query:   221 PGLLRLTVEGTFEAQERA 238
             P L+ L+  GT  A+++A
Sbjct:   314 PPLVALSQAGTSRAKQKA 331

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2130699 AT4G16490 "AT4G16490" [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 5.7e-21, P = 5.7e-21
 Identities = 72/220 (32%), Positives = 114/220 (51%)

Query:    40 RNKVKIATAGAIPPLVELLKFQNGTLREXXXXXXXXXXXXXXXXXXXXXXXXXXLLVQIL 99
             +NK  IA  GAI  LV +LK    T ++                           LV +L
Sbjct:   257 QNKAVIAAGGAIKSLVWVLKTGTETSKQNAACALLSLALLEENKGSIGACGAIPPLVSLL 316

Query:   100 HSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEI 159
              +GS +G+ DA+T L+ L T ++N    + A AV PL++L+ +  + +  AEKA  +L  
Sbjct:   317 LNGSCRGKKDALTTLYKLCTLQQNKERAVTAGAVKPLVDLVAE--EGTGMAEKAMVVLSS 374

Query:   160 LSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQ-SCRDKYRQLILKEG 218
             L++ ++G+ AI   +GGI  LVE +EDGS+   + A+  LL LC  S R+  R L+++EG
Sbjct:   375 LAAIDDGKEAIVE-EGGIAALVEAIEDGSVKGKEFAILTLLQLCSDSVRN--RGLLVREG 431

Query:   219 AIPGLLRLTVEGTFEAQ-ERAXXXXXXXXXXPQEKRLSSS 257
             AIP L+ L+  G+   + +R           P+++  SSS
Sbjct:   432 AIPPLVGLSQSGSVSVRAKRKAERLLGYLREPRKEASSSS 471

GO:0008150 "biological_process" evidence=ND

GO:0006816 "calcium ion transport" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

TAIR|locus:2158252 AT5G67340 [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 3.4e-20, P = 3.4e-20
 Identities = 73/201 (36%), Positives = 100/201 (49%)

Query:    41 NKVKIATAGAIPPLVELLKFQNGTLREXXXXXXXXXXXXXXXXXXXXXXXXXXL---LVQ 97
             NK  IA +GAI PL+ +LK   G L E                              LV 
Sbjct:   496 NKSLIAESGAIVPLIHVLK--TGYLEEAKANSAATLFSLSVIEEYKTEIGEAGAIEPLVD 553

Query:    98 ILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALL 157
             +L SGS+ G+ DA TAL  LS   EN + +++A AV  L+ L+     +    EKA  +L
Sbjct:   554 LLGSGSLSGKKDAATALFNLSIHHENKTKVIEAGAVRYLVELMDPA--FG-MVEKAVVVL 610

Query:   158 EILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKE 217
               L++  EG+IAI   +GGI  LVE VE GS    ++A  ALL LC     K+   +++E
Sbjct:   611 ANLATVREGKIAI-GEEGGIPVLVEVVELGSARGKENATAALLQLCTHS-PKFCNNVIRE 668

Query:   218 GAIPGLLRLTVEGTFEAQERA 238
             G IP L+ LT  GT   +E+A
Sbjct:   669 GVIPPLVALTKSGTARGKEKA 689

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0006984 "ER-nucleus signaling pathway" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2102455 AT3G54790 [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 6.3e-20, P = 6.3e-20
 Identities = 73/199 (36%), Positives = 99/199 (49%)

Query:    41 NKVKIATAGAIPPLVELLKFQNGTLREXXXXXXXXXXXXXXXXXXXXXXXXXX-LLVQIL 99
             NK  I   GAI PLV +L   N   +E                            LV +L
Sbjct:   547 NKAMIVEVGAIEPLVHVLNTGNDRAKENSAASLFSLSVLQVNRERIGQSNAAIQALVNLL 606

Query:   100 HSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEI 159
               G+ +G+ DA +AL  LS   +N + I+ A AV  L+ LL    +     +KA ALL  
Sbjct:   607 GKGTFRGKKDAASALFNLSITHDNKARIVQAKAVKYLVELLDPDLE---MVDKAVALLAN 663

Query:   160 LSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGA 219
             LS+  EGR AI   +GGI  LVETV+ GS    ++A   LL LC +   K+  L+L+EGA
Sbjct:   664 LSAVGEGRQAIVR-EGGIPLLVETVDLGSQRGKENAASVLLQLCLNS-PKFCTLVLQEGA 721

Query:   220 IPGLLRLTVEGTFEAQERA 238
             IP L+ L+  GT  A+E+A
Sbjct:   722 IPPLVALSQSGTQRAKEKA 740

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

TAIR|locus:2045334 PUB4 "plant U-box 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 7.3e-20, P = 7.3e-20
 Identities = 75/221 (33%), Positives = 112/221 (50%)

Query:    19 YFEGYARRLNLMGPLWQLS-KTRNKVKIATAGAIPPLVELLKFQNGTLREXXXXXXXXXX 77
             Y    A + N +  L  LS    NK  IA AGAI PL+ +L+  +   +E          
Sbjct:   596 YSTDSATQENAVTALLNLSINDNNKKAIADAGAIEPLIHVLENGSSEAKENSAATLFSLS 655

Query:    78 XXXXXXXXXXXXXXXXLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLI 137
                              LV +L +G+ +G+ DA TAL  LS  +EN + I+ + AV  LI
Sbjct:   656 VIEENKIKIGQSGAIGPLVDLLGNGTPRGKKDAATALFNLSIHQENKAMIVQSGAVRYLI 715

Query:   138 NLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVG 197
             +L+      +   +KA A+L  L++  EGR AI   +GGI  LVE VE GS    ++A  
Sbjct:   716 DLMDPA---AGMVDKAVAVLANLATIPEGRNAI-GQEGGIPLLVEVVELGSARGKENAAA 771

Query:   198 ALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERA 238
             ALL L  +   ++  ++L+EGA+P L+ L+  GT  A+E+A
Sbjct:   772 ALLQLSTNS-GRFCNMVLQEGAVPPLVALSQSGTPRAREKA 811

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

TAIR|locus:2178818 AT5G58680 "AT5G58680" [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 8.2e-18, P = 8.2e-18
 Identities = 55/187 (29%), Positives = 94/187 (50%)

Query:    41 NKVKIATAGAIPPLVELLKFQNGTLREXXXXXXXXXXXXXXXXXXXXXXXXXXLLVQILH 100
             NK  I ++GA+ PLV  L+    T +E                          LLV +L 
Sbjct:   136 NKEMIVSSGAVKPLVNALRLGTPTTKENAACALLRLSQVEENKITIGRSGAIPLLVNLLE 195

Query:   101 SGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEIL 160
             +G  + + DA TAL+ L +  EN +  +++  + PL+ L+ D +  S   +K+  ++ +L
Sbjct:   196 NGGFRAKKDASTALYSLCSTNENKTRAVESGIMKPLVELMIDFE--SDMVDKSAFVMNLL 253

Query:   161 SSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAI 220
              S+ E + A+   +GG+  LVE VE G+    + +V  LL LC+     YR ++ +EGA+
Sbjct:   254 MSAPESKPAVVE-EGGVPVLVEIVEAGTQRQKEISVSILLQLCEESV-VYRTMVAREGAV 311

Query:   221 PGLLRLT 227
             P L+ L+
Sbjct:   312 PPLVALS 318

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009693 "ethylene biosynthetic process" evidence=RCA

TAIR|locus:2162276 PUB15 "Plant U-Box 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 5.9e-16, P = 5.9e-16
 Identities = 65/198 (32%), Positives = 93/198 (46%)

Query:    41 NKVKIATAGAIPPLVELLKFQNGTLREXXXXXXXXXXXXXXXXXXXXXXXXXXLLVQILH 100
             NK  I+  GAIP ++E+L+  N   RE                           LV +L 
Sbjct:   454 NKKLISNEGAIPNIIEILENGNREARENSAAALFSLSMLDENKVTIGLSNGIPPLVDLLQ 513

Query:   101 SGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEIL 160
              G+++G+ DA+TAL  LS    N    +DA  V PL+NLLKD  K     ++A ++L +L
Sbjct:   514 HGTLRGKKDALTALFNLSLNSANKGRAIDAGIVQPLLNLLKD--KNLGMIDEALSILLLL 571

Query:   161 SSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAI 220
             +S  EGR AI      I TLVE +  G+  + + A   LL L  S    +    L+ G  
Sbjct:   572 ASHPEGRQAIGQLSF-IETLVEFIRQGTPKNKECATSVLLEL-GSNNSSFILAALQFGVY 629

Query:   221 PGLLRLTVEGTFEAQERA 238
               L+ +T  GT  AQ +A
Sbjct:   630 EYLVEITTSGTNRAQRKA 647

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0030048 "actin filament-based movement" evidence=RCA

GO:0048610 "cellular process involved in reproduction" evidence=RCA

GO:0048868 "pollen tube development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	314
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-13
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	2e-05
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	7e-05
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	7e-05
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	9e-05
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	3e-04
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	4e-04
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	0.001

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 65.8 bits (161), Expect = 1e-13
 Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 4/121 (3%)

Query: 44  KIATAGAIPPLVELLKFQNGTLRELAAAAILTLSA-AAPNKPAIAASGAAPLLVQILHSG 102
            +  AG +P LV LL   +  ++  AA A+  LSA    N  A+  +G  P LVQ+L S 
Sbjct: 2   AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61

Query: 103 SVQGRVDAVTALHYLSTCKENSSPIL-DATAVPPLINLLKDCKKYSKFAEKATALLEILS 161
             +    A+ AL  L+   E++  I+ +A  VP L+NLL          + AT  L  L+
Sbjct: 62  DEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDS--SNEDIQKNATGALSNLA 119

Query: 162 S 162
           S
Sbjct: 120 S 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 56/190 (29%), Positives = 89/190 (46%), Gaps = 21/190 (11%)

Query: 66  RELAAAAILTLSAAAPNKPAIAAS--GAAPLLVQILHSGSVQGRVDAVTALHYLSTCKEN 123
           +EL  A +L L+           S   A PLLV +L SG++  +V+A   L  L  CKE 
Sbjct: 32  KELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVL--CKEE 89

Query: 124 S--SPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIA------ITNSDG 175
                +L    +PPL++LLK     S  AE   A  E + +   G ++      I +++G
Sbjct: 90  DLRVKVLLGGCIPPLLSLLK-----SGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEG 144

Query: 176 GILTLVETVEDGSL---VSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTF 232
            + +L + ++ G+    V      GAL +LC S  D +    L+ G +  L++L   G  
Sbjct: 145 VVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGS-TDGFWSATLEAGGVDILVKLLSSGNS 203

Query: 233 EAQERARTLL 242
           +AQ  A +LL
Sbjct: 204 DAQANAASLL 213

Length = 2102

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 53/175 (30%), Positives = 82/175 (46%), Gaps = 16/175 (9%)

Query: 44  KI-ATAGAIPPLVELLKFQNG---TLRELAAAAILTLSAAAPNK-PAIAASGAAPLLVQI 98
           KI +T G +P L + L+  N     +  L   A+  L  +      A   +G   +LV++
Sbjct: 138 KIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKL 197

Query: 99  LHSGSVQGRVDAVTALHYLSTCKENSSP-ILDATAVPPLINLLKDCKKYSKFAEKATALL 157
           L SG+   + +A + L  L    E+S   +LDA AV  L+ LL    + S  AE A AL 
Sbjct: 198 LSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALE 257

Query: 158 EILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQ---------HAVGALLSLC 203
            + S S+E + AI ++ GGI  L+      S    Q         +A+GAL ++C
Sbjct: 258 ALSSQSKEAKQAIADA-GGIPALINATVAPSKEFMQGEFAQALQENAMGALANIC 311

Length = 2102

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score = 44.1 bits (104), Expect = 7e-05
 Identities = 32/120 (26%), Positives = 48/120 (40%), Gaps = 9/120 (7%)

Query: 44  KIATAGAIPPLVELLKFQNGTLRELAAAAILT--LSAAAPNKPAIAASGAAPLLVQILHS 101
            +  AG +P  VE +      + +  AA  LT   S        +  +GA PL +Q+L S
Sbjct: 109 PVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSS 168

Query: 102 GSVQGRVDAVTALHYL----STCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALL 157
                R  AV AL  +      C++    +L   A+ PL+ LL     +      AT  L
Sbjct: 169 TEDDVREQAVWALGNIAGDSEGCRDY---VLQCGALEPLLGLLLSSAIHISMLRNATWTL 225

Length = 526

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 43.9 bits (104), Expect = 9e-05
 Identities = 44/196 (22%), Positives = 75/196 (38%), Gaps = 31/196 (15%)

Query: 30  MGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTL------SAAAPNK 83
           +  L +  K   KV  A   AI PL++L K  +  + E A  A+  L      +A A  +
Sbjct: 675 LAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAE 734

Query: 84  PAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDAT--------AVPP 135
             I        L ++L  G+++G+ +A  AL  L        P+ D           V  
Sbjct: 735 DIILP------LTRVLREGTLEGKRNAARALAQLL----KHFPVDDVLKDSVQCRGTVLA 784

Query: 136 LINLLKDCKKYSKFAEKATALLEILSSSEEG-------RIAITNSDGGILTLVETVEDGS 188
           L++LL      S    +A   L +L+ ++ G          +      +  LV  + +G 
Sbjct: 785 LVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGH 844

Query: 189 LVSTQHAVGALLSLCQ 204
            +    A+  L  LC+
Sbjct: 845 PLVQDKAIEILSRLCR 860

Length = 2102

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 65/240 (27%), Positives = 109/240 (45%), Gaps = 30/240 (12%)

Query: 31  GPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAA--AILTLSAAAPNKPAIAA 88
           G LW+    R  V++        L+ LL   +   +E A A  AILT      +K AI A
Sbjct: 436 GGLWEALGGREGVQL--------LISLLGLSSEQQQEYAVALLAILT-DEVDESKWAITA 486

Query: 89  SGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKEN-SSPILDATAVPPLINLLKDCKKYS 147
           +G  P LVQ+L +GS + + D+ T L  L    E+  + +  A AVP L+ LLK+     
Sbjct: 487 AGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKG 546

Query: 148 KFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCR 207
           +    A  L +++ +++   I+       +  L+      S V     +G +LS+  S  
Sbjct: 547 QEI-AAKTLTKLVRTADAATIS------QLTALLLGDLPESKVHVLDVLGHVLSVA-SLE 598

Query: 208 DKYRQLILKEG-----AIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKI 262
           D     +++EG     A+  L++L      E QE+A ++L  +  + Q+   S +  E I
Sbjct: 599 D-----LVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEII 653

Length = 2102

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 62/213 (29%), Positives = 95/213 (44%), Gaps = 13/213 (6%)

Query: 26  RLNLMGPLWQLSKTRN-KVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPN-- 82
           ++N    L  L K  + +VK+   G IPPL+ LLK  +   ++ AA AI  +S+   +  
Sbjct: 75  KVNAAAVLGVLCKEEDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDH 134

Query: 83  --KPAIAASGAAPLLVQILHSGSVQGRV--DAVT-ALHYLSTCKENS-SPILDATAVPPL 136
                 +  G  P L   L  G+ Q +V    +T AL  L    +   S  L+A  V  L
Sbjct: 135 VGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDIL 194

Query: 137 INLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQ-HA 195
           + LL      S     A +LL  L  + E  I+     G +  L++ +  G+ VS +  A
Sbjct: 195 VKLLS--SGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEA 252

Query: 196 VGALLSLCQSCRDKYRQLILKEGAIPGLLRLTV 228
            GAL +L    ++  +Q I   G IP L+  TV
Sbjct: 253 AGALEALSSQSKEA-KQAIADAGGIPALINATV 284

Length = 2102

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 35.5 bits (83), Expect = 0.001
 Identities = 15/40 (37%), Positives = 22/40 (55%)

Query: 80  APNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLST 119
             NK A+  +GA P LVQ+L S   + + +A  AL  L+ 
Sbjct: 2   PENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	314
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.97
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.96
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.96
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.96
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.95
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.94
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.92
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.91
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.9
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.83
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.79
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.77
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.76
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.76
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.74
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.73
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.69
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.58
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.48
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.47
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.47
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.41
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.39
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.35
PRK09687	280	putative lyase; Provisional	99.32
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.26
PRK09687	280	putative lyase; Provisional	99.22
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.21
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.18
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.17
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.09
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.99
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.99
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.96
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.94
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.92
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.91
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.89
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.86
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.74
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.73
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.7
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.66
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.62
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.62
PTZ00429	746	beta-adaptin; Provisional	98.48
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.48
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.46
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	98.39
PTZ00429	746	beta-adaptin; Provisional	98.35
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.34
PF05536	543	Neurochondrin: Neurochondrin	98.31
PF05536	543	Neurochondrin: Neurochondrin	98.29
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.28
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.28
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.25
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.23
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	98.21
TIGR02270	410	conserved hypothetical protein. Members are found	98.18
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.18
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.16
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.13
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	98.12
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	98.1
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.02
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	98.02
KOG2734	536	consensus Uncharacterized conserved protein [Funct	98.02
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.93
KOG0212	675	consensus Uncharacterized conserved protein [Funct	97.93
KOG3678	832	consensus SARM protein (with sterile alpha and arm	97.92
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.88
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.86
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.84
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.84
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.84
TIGR02270	410	conserved hypothetical protein. Members are found	97.83
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.8
KOG4413	524	consensus 26S proteasome regulatory complex, subun	97.79
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.78
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.78
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.73
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.69
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.68
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.65
KOG1242	569	consensus Protein containing adaptin N-terminal re	97.56
KOG0212	675	consensus Uncharacterized conserved protein [Funct	97.56
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	97.54
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	97.53
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	97.48
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.44
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.44
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	97.4
COG5369	743	Uncharacterized conserved protein [Function unknow	97.38
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.36
KOG1242	569	consensus Protein containing adaptin N-terminal re	97.34
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.34
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.27
KOG2259	823	consensus Uncharacterized conserved protein [Funct	97.25
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	97.18
COG5369	743	Uncharacterized conserved protein [Function unknow	97.12
KOG4413	524	consensus 26S proteasome regulatory complex, subun	97.06
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	97.0
KOG3036	293	consensus Protein involved in cell differentiation	96.97
KOG3036	293	consensus Protein involved in cell differentiation	96.88
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	96.87
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	96.86
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	96.85
KOG2734	536	consensus Uncharacterized conserved protein [Funct	96.78
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	96.77
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	96.76
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	96.73
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	96.72
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	96.71
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	96.7
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	96.66
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	96.66
KOG2259	823	consensus Uncharacterized conserved protein [Funct	96.65
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	96.54
KOG0567	289	consensus HEAT repeat-containing protein [General	96.46
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	96.44
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	96.44
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	96.41
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	96.39
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	96.39
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	96.37
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	96.37
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	96.29
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	96.18
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	96.18
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	96.17
PF05004	309	IFRD: Interferon-related developmental regulator (	96.07
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	95.99
KOG1824	1233	consensus TATA-binding protein-interacting protein	95.99
PF05004	309	IFRD: Interferon-related developmental regulator (	95.88
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	95.83
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	95.79
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	95.78
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	95.74
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	95.63
KOG4653	982	consensus Uncharacterized conserved protein [Funct	95.57
PF08045	257	CDC14: Cell division control protein 14, SIN compo	95.55
PF08045	257	CDC14: Cell division control protein 14, SIN compo	95.35
COG5096	757	Vesicle coat complex, various subunits [Intracellu	95.3
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	95.27
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	95.26
COG5096	757	Vesicle coat complex, various subunits [Intracellu	95.25
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	95.2
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.17
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	95.15
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	95.12
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	95.12
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.05
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	94.98
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	94.58
KOG1824	1233	consensus TATA-binding protein-interacting protein	94.42
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	94.35
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	94.34
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	94.31
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	94.23
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	94.04
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	93.97
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	93.79
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	93.7
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	93.62
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	93.53
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	93.47
KOG2025	892	consensus Chromosome condensation complex Condensi	93.43
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	93.27
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	93.27
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	93.24
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	93.23
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	93.15
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	93.13
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	93.01
PF07814	361	WAPL: Wings apart-like protein regulation of heter	92.98
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	92.98
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	92.93
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	92.84
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	92.79
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	92.74
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	92.62
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	92.2
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	92.19
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	92.19
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	92.07
KOG2032	533	consensus Uncharacterized conserved protein [Funct	92.06
KOG2933	334	consensus Uncharacterized conserved protein [Funct	91.81
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	91.35
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	91.13
KOG0567	289	consensus HEAT repeat-containing protein [General	90.93
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	90.77
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	90.47
KOG2025	892	consensus Chromosome condensation complex Condensi	90.45
KOG0414	1251	consensus Chromosome condensation complex Condensi	90.39
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	90.35
KOG2956	516	consensus CLIP-associating protein [General functi	89.91
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	89.8
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	89.62
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	89.39
KOG2956	516	consensus CLIP-associating protein [General functi	89.04
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	88.94
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	88.88
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	88.75
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	88.27
cd03561	133	VHS VHS domain family; The VHS domain is present i	87.53
PF07814	361	WAPL: Wings apart-like protein regulation of heter	87.44
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	87.38
KOG0301	745	consensus Phospholipase A2-activating protein (con	87.32
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	86.99
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	86.86
KOG2062	929	consensus 26S proteasome regulatory complex, subun	86.54
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	86.13
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	86.03
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	85.96
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	85.92
COG5116	926	RPN2 26S proteasome regulatory complex component [	85.91
PF06685	249	DUF1186: Protein of unknown function (DUF1186); In	85.78
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	85.6
KOG2137	700	consensus Protein kinase [Signal transduction mech	85.23
KOG0414	1251	consensus Chromosome condensation complex Condensi	84.85
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	84.03
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	83.61
KOG1243	690	consensus Protein kinase [General function predict	83.48
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	82.29
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	81.94
KOG4653	982	consensus Uncharacterized conserved protein [Funct	81.59
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	81.07
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	80.46

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.6e-30  Score=225.13  Aligned_cols=279  Identities=19%  Similarity=0.166  Sum_probs=252.6

Q ss_pred             eccccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHH
Q 021317           15 FMETYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPL   94 (314)
Q Consensus        15 ~~l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~   94 (314)
                      .++++.++.+|..+..++.+..-+.+|+..+++.+++++|+.-+..+..+++-.++.+++||+..+++|..|...|++.+
T Consensus        92 ~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~p  171 (550)
T KOG4224|consen   92 ALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIARSGALEP  171 (550)
T ss_pred             HHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhhhhccchhh
Confidence            45688899999999999997777889999999999999998877777888999999999999999999999999999999


Q ss_pred             HHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhcc
Q 021317           95 LVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSD  174 (314)
Q Consensus        95 Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~  174 (314)
                      +.++-++.+..++.++.++|.|+....+||..++..|++|.||.++++++.  +++..|+.++.|++.+..+|+.++ +.
T Consensus       172 ltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~--dvqyycttaisnIaVd~~~Rk~La-qa  248 (550)
T KOG4224|consen  172 LTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDL--DVQYYCTTAISNIAVDRRARKILA-QA  248 (550)
T ss_pred             hHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCCh--hHHHHHHHHhhhhhhhHHHHHHHH-hc
Confidence            999888889999999999999999999999999999999999999999866  788999999999999999999998 67


Q ss_pred             C--CHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCch-
Q 021317          175 G--GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE-  251 (314)
Q Consensus       175 g--~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~-  251 (314)
                      |  .|+.|+.++++++++++..|.-+|.||+...  +++..++++|++|.+++++++..-..--..+.+++|++-|+-. 
T Consensus       249 ep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt--~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe  326 (550)
T KOG4224|consen  249 EPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT--EYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNE  326 (550)
T ss_pred             ccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc--hhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcc
Confidence            7  9999999999999999999999999999875  7899999999999999999988877778888999999988843 


Q ss_pred             -hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 021317          252 -KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELSMTRIQQ  301 (314)
Q Consensus       252 -~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~~~~~~~~~~  301 (314)
                       ...+.|++.++|..|.  ...+++++.+|...|++|+. |.|+|++.+..
T Consensus       327 ~lI~dagfl~pLVrlL~--~~dnEeiqchAvstLrnLAa-sse~n~~~i~e  374 (550)
T KOG4224|consen  327 VLIADAGFLRPLVRLLR--AGDNEEIQCHAVSTLRNLAA-SSEHNVSVIRE  374 (550)
T ss_pred             cceecccchhHHHHHHh--cCCchhhhhhHHHHHHHHhh-hhhhhhHHHhh
Confidence             5667999999988776  44458899999999999996 67888877543

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.96  E-value=3.7e-28  Score=251.73  Aligned_cols=276  Identities=22%  Similarity=0.227  Sum_probs=236.7

Q ss_pred             eeccccC--CHHHHHHHHHHhH-hhccCchhHHHHHh-cCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhc
Q 021317           14 VFMETYF--EGYARRLNLMGPL-WQLSKTRNKVKIAT-AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAAS   89 (314)
Q Consensus        14 v~~l~~~--~~~~~~~a~~al~-l~~~~~~~~~~l~~-~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~   89 (314)
                      ++-|.++  +++.|+.++..|. ++..+++||..+.+ .|++|.|+.+|.++++.+++.|+.+|.+|+.+++++..|...
T Consensus        19 ve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~nk~~Iv~~   98 (2102)
T PLN03200         19 IEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLRVKVLLG   98 (2102)
T ss_pred             HHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHc
Confidence            4566655  7899999999999 99999999999996 899999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC---CCchh-hhhcCCcHHHHHHhhccCCchH-HHHHHHHHHHHhcCCh
Q 021317           90 GAAPLLVQILHSGSVQGRVDAVTALHYLSTCK---ENSSP-ILDATAVPPLINLLKDCKKYSK-FAEKATALLEILSSSE  164 (314)
Q Consensus        90 g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~---~~~~~-i~~~g~i~~Lv~lL~~~~~~~~-~~~~a~~~L~~L~~~~  164 (314)
                      |++|+|+.+|++++++.+++|+.+|.+|+.++   .++.. ++..|++|+|++++++++.... +.+.++.+|.||+.+.
T Consensus        99 GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~  178 (2102)
T PLN03200         99 GCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGST  178 (2102)
T ss_pred             CChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCc
Confidence            99999999999999999999999999999763   34544 5579999999999999753223 5567789999999999


Q ss_pred             hhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcC-CHHHHHHHHHHHH
Q 021317          165 EGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEG-TFEAQERARTLLD  243 (314)
Q Consensus       165 ~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~-~~~~~~~A~~~L~  243 (314)
                      +++...+.+.|+||.++.+|+++++..+..|+.+|.+++.+.+ +.++.+++.|++|.|+++++++ ++.+|++|+|+|+
T Consensus       179 en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~e-e~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~  257 (2102)
T PLN03200        179 DGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFE-SSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALE  257 (2102)
T ss_pred             cchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh-HHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHH
Confidence            9886553379999999999999999999999999999998764 6799999999999999999875 5699999999999


Q ss_pred             HhhcCCch---hhcchhhhHHHHHHHhhcCC------CHHHHHHHHHHHHHHHHHH
Q 021317          244 LLRDTPQE---KRLSSSVLEKIVYDIAARVD------GADKAAETAKRLLQDMVQR  290 (314)
Q Consensus       244 ~l~~~~~~---~~~~~~~~~~lv~~l~~~~~------~~~~~~~~A~~~L~~l~~~  290 (314)
                      +++.++.+   ..++.|+++.++..+.....      .+...++.|.++|.|+...
T Consensus       258 nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg  313 (2102)
T PLN03200        258 ALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG  313 (2102)
T ss_pred             HHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC
Confidence            99987643   46678999999877752110      1234589999999998863

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.96  E-value=3.6e-28  Score=251.76  Aligned_cols=275  Identities=20%  Similarity=0.204  Sum_probs=239.1

Q ss_pred             cceeeccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC-CCChhHHhh
Q 021317           11 GVEVFMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA-APNKPAIAA   88 (314)
Q Consensus        11 ~~~v~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~i~~   88 (314)
                      .++|.|+.+++.+.|+.++++|. ++.++++++..+.+.|++|.|+++|.++++..+..|+++|.||+.. ++++..|.+
T Consensus       407 k~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIie  486 (2102)
T PLN03200        407 KVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITA  486 (2102)
T ss_pred             hhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            45688999999999999999999 7778899999999999999999999999999999999999999974 578889999


Q ss_pred             cCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhh-hcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhh-
Q 021317           89 SGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPIL-DATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEG-  166 (314)
Q Consensus        89 ~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~-  166 (314)
                      .|++|+|+++|.+++..++++|+|+|.||+.+++++..++ +.|++++|+++|++++.  +.++.|+.+|.||..+.+. 
T Consensus       487 aGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~--~~q~~Aa~AL~nLi~~~d~~  564 (2102)
T PLN03200        487 AGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGP--KGQEIAAKTLTKLVRTADAA  564 (2102)
T ss_pred             CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCH--HHHHHHHHHHHHHHhccchh
Confidence            9999999999999999999999999999998776666655 68999999999999754  7788999999998643221 


Q ss_pred             ------------------------------------hhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHH
Q 021317          167 ------------------------------------RIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKY  210 (314)
Q Consensus       167 ------------------------------------~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~  210 (314)
                                                          ........|+++.|+.+++++++.+++.|+++|.+++..++ ++
T Consensus       565 ~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~-d~  643 (2102)
T PLN03200        565 TISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQ-DL  643 (2102)
T ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCh-HH
Confidence                                                11111247899999999999999999999999999999875 77


Q ss_pred             HHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCch----hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 021317          211 RQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE----KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQD  286 (314)
Q Consensus       211 ~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~----~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~  286 (314)
                      .+.++..|++++|+.++++++..+++.|+++|.++..+..+    .++..|++++++..|.   +++.+..+.|..+|.+
T Consensus       644 ~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~---~~d~~v~e~Al~ALan  720 (2102)
T PLN03200        644 CESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAK---SSSIEVAEQAVCALAN  720 (2102)
T ss_pred             HHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHh---CCChHHHHHHHHHHHH
Confidence            88899999999999999999999999999999999965532    2456889999887775   5568899999999999


Q ss_pred             HHHHH
Q 021317          287 MVQRS  291 (314)
Q Consensus       287 l~~~s  291 (314)
                      +.++.
T Consensus       721 Ll~~~  725 (2102)
T PLN03200        721 LLSDP  725 (2102)
T ss_pred             HHcCc
Confidence            99754

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=4e-28  Score=210.27  Aligned_cols=268  Identities=22%  Similarity=0.266  Sum_probs=240.8

Q ss_pred             ccccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcC--cHH
Q 021317           16 METYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASG--AAP   93 (314)
Q Consensus        16 ~l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g--~l~   93 (314)
                      +-++.+..+|..++.+|.+..++.+||+.++.+|++|.|++++++++++++..++.++.|++.+..+|+.+++.|  .+|
T Consensus       175 LakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~  254 (550)
T KOG4224|consen  175 LAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVP  254 (550)
T ss_pred             hcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHH
Confidence            456788999999999999888999999999999999999999999999999999999999999999999999877  999


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhc
Q 021317           94 LLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNS  173 (314)
Q Consensus        94 ~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~  173 (314)
                      .|++++++++++++..|..+|+||+.+.+.+..+++.|.+|.++++++++..  +.......++.|++.++-|-.-++ +
T Consensus       255 ~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~--plilasVaCIrnisihplNe~lI~-d  331 (550)
T KOG4224|consen  255 ALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMG--PLILASVACIRNISIHPLNEVLIA-D  331 (550)
T ss_pred             HHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcch--hHHHHHHHHHhhcccccCccccee-c
Confidence            9999999999999999999999999999999999999999999999988643  666778889999999999988888 7


Q ss_pred             cCCHHHHHHHhhcCC-HHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCc--
Q 021317          174 DGGILTLVETVEDGS-LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQ--  250 (314)
Q Consensus       174 ~g~v~~Lv~ll~~~~-~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~--  250 (314)
                      .|.+.+|+++|+.++ .+++..|..+|+||+... +.++..+.+.|++|.|..++.++.-.+|+.-.+++..|+-...  
T Consensus       332 agfl~pLVrlL~~~dnEeiqchAvstLrnLAass-e~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k  410 (550)
T KOG4224|consen  332 AGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASS-EHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDK  410 (550)
T ss_pred             ccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhh-hhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccH
Confidence            999999999998765 669999999999999865 3779999999999999999999999999988888888875443  


Q ss_pred             hhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Q 021317          251 EKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR  290 (314)
Q Consensus       251 ~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~  290 (314)
                      +.....|+++-+++.+.   +.+++.+..|+.+|.||..+
T Consensus       411 ~~lld~gi~~iLIp~t~---s~s~Ev~gNaAaAL~Nlss~  447 (550)
T KOG4224|consen  411 EALLDSGIIPILIPWTG---SESEEVRGNAAAALINLSSD  447 (550)
T ss_pred             HHHhhcCCcceeecccC---ccchhhcccHHHHHHhhhhh
Confidence            35677899988776665   55678899999999999854

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.5e-26  Score=212.36  Aligned_cols=280  Identities=16%  Similarity=0.185  Sum_probs=238.9

Q ss_pred             eeccc-cCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC-CChhHHhhcC
Q 021317           14 VFMET-YFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA-PNKPAIAASG   90 (314)
Q Consensus        14 v~~l~-~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~~~~~i~~~g   90 (314)
                      |..|+ ..++..|..|.|+|. .++++.+.-..+++.|++|.|+.++.+++.+++++|+++|+|++.+. .+|..+.+.|
T Consensus       115 V~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g  194 (514)
T KOG0166|consen  115 VEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCG  194 (514)
T ss_pred             HHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhc
Confidence            34444 556999999999999 77888888888889999999999999999999999999999999975 7788889999


Q ss_pred             cHHHHHHHhccCCH-HHHHHHHHHHHHhcCCCCCchhhhh-cCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhh
Q 021317           91 AAPLLVQILHSGSV-QGRVDAVTALHYLSTCKENSSPILD-ATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRI  168 (314)
Q Consensus        91 ~l~~Lv~lL~~~~~-~~~~~a~~~L~nLs~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~  168 (314)
                      ++++|+.++..+++ ....++.|+|.||+....-...+.. ..++|.|..++.+.+.  .+...|++++..|+.+...+.
T Consensus       195 ~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~--~Vl~Da~WAlsyLsdg~ne~i  272 (514)
T KOG0166|consen  195 ALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDE--EVLTDACWALSYLTDGSNEKI  272 (514)
T ss_pred             chHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHhcCChHHH
Confidence            99999999998876 7889999999999987754444444 5789999999998654  788899999999998766655


Q ss_pred             HHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhh-cCCHHHHHHHHHHHHHhhc
Q 021317          169 AITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTV-EGTFEAQERARTLLDLLRD  247 (314)
Q Consensus       169 ~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~-~~~~~~~~~A~~~L~~l~~  247 (314)
                      .++.+.|.++.|+.+|.+.+..++..|++++.|++.++. ...+.+++.|+++.|..++. +..+.+++.|+|++.|++.
T Consensus       273 q~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d-~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA  351 (514)
T KOG0166|consen  273 QMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSD-EQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA  351 (514)
T ss_pred             HHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccH-HHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc
Confidence            555589999999999999999999999999999998874 67788889999999999888 4566799999999999998


Q ss_pred             CCch---hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 021317          248 TPQE---KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELSMTRI  299 (314)
Q Consensus       248 ~~~~---~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~~~~~~~~  299 (314)
                      +.++   .++.++.++.++..|.   .+..+.|.+|++++.|+....-+.-.+.+
T Consensus       352 G~~~qiqaVida~l~p~Li~~l~---~~ef~~rKEAawaIsN~ts~g~~~qi~yL  403 (514)
T KOG0166|consen  352 GNQEQIQAVIDANLIPVLINLLQ---TAEFDIRKEAAWAISNLTSSGTPEQIKYL  403 (514)
T ss_pred             CCHHHHHHHHHcccHHHHHHHHh---ccchHHHHHHHHHHHhhcccCCHHHHHHH
Confidence            7754   5677899998887776   56689999999999999976654444443

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=3.7e-25  Score=203.14  Aligned_cols=271  Identities=17%  Similarity=0.209  Sum_probs=229.1

Q ss_pred             eeccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCH-HHHHHHHHHHHHhccCCCChhHH-hhcC
Q 021317           14 VFMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNG-TLRELAAAAILTLSAAAPNKPAI-AASG   90 (314)
Q Consensus        14 v~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~-~~~~~a~~~L~~La~~~~~~~~i-~~~g   90 (314)
                      +.++.++++.++++|+|||. .+.+++..|..+.+.|++++|+.++..+++ .....++++|.||+....-...+ .-..
T Consensus       158 i~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~  237 (514)
T KOG0166|consen  158 IQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAP  237 (514)
T ss_pred             HHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHH
Confidence            67889999999999999999 778889999999999999999999987765 67788999999999875433332 2467


Q ss_pred             cHHHHHHHhccCCHHHHHHHHHHHHHhcCCC-CCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhH
Q 021317           91 AAPLLVQILHSGSVQGRVDAVTALHYLSTCK-ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIA  169 (314)
Q Consensus        91 ~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~  169 (314)
                      ++|.|..++++.|+++...|+|+|.+|+..+ +.-..+++.|+++.|+++|.+...  .++..|++++.|++.+.+.+.+
T Consensus       238 iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~--~v~~PaLRaiGNIvtG~d~QTq  315 (514)
T KOG0166|consen  238 ILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSP--KVVTPALRAIGNIVTGSDEQTQ  315 (514)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCc--ccccHHHhhccceeeccHHHHH
Confidence            8999999999999999999999999999554 556667789999999999999765  6778999999999999888877


Q ss_pred             HHhccCCHHHHHHHhh-cCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 021317          170 ITNSDGGILTLVETVE-DGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDT  248 (314)
Q Consensus       170 i~~~~g~v~~Lv~ll~-~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~  248 (314)
                      .+...|+++.|..++. +....++..|+|++.|++.+++ +..++++++|.+|.|+.++..++..+|+.|+|++.|++.+
T Consensus       316 ~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~-~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~  394 (514)
T KOG0166|consen  316 VVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQ-EQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSS  394 (514)
T ss_pred             HHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCH-HHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhccc
Confidence            7668999999999998 4556799999999999999886 6788999999999999999999999999999999999877


Q ss_pred             Cchh----hcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Q 021317          249 PQEK----RLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR  290 (314)
Q Consensus       249 ~~~~----~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~  290 (314)
                      ...+    +++.|+++++...|-   ..+.+.-..+...|.++.+.
T Consensus       395 g~~~qi~yLv~~giI~plcdlL~---~~D~~ii~v~Ld~l~nil~~  437 (514)
T KOG0166|consen  395 GTPEQIKYLVEQGIIKPLCDLLT---CPDVKIILVALDGLENILKV  437 (514)
T ss_pred             CCHHHHHHHHHcCCchhhhhccc---CCChHHHHHHHHHHHHHHHH
Confidence            7432    345777777755552   22345577777788877754

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.92  E-value=4.2e-24  Score=183.98  Aligned_cols=281  Identities=17%  Similarity=0.128  Sum_probs=230.8

Q ss_pred             cccCCHHHHHHHHHHhH--hhccCchhHHHHHhcCCcHHHHHHhcC-CCHHHHHHHHHHHHHhccCCCChhH-HhhcCcH
Q 021317           17 ETYFEGYARRLNLMGPL--WQLSKTRNKVKIATAGAIPPLVELLKF-QNGTLRELAAAAILTLSAAAPNKPA-IAASGAA   92 (314)
Q Consensus        17 l~~~~~~~~~~a~~al~--l~~~~~~~~~~l~~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~La~~~~~~~~-i~~~g~l   92 (314)
                      |.|+|.+.|..|+.-+.  +..++..--..+++.|+||.++++|++ ...-.+..|+++|.|++.....+.. +++.|++
T Consensus        80 l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AV  159 (526)
T COG5064          80 LFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAV  159 (526)
T ss_pred             HhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCch
Confidence            56778888888888887  555555566788899999999999954 4555778999999999997665555 4599999


Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHHhcC-CCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChh--hhhH
Q 021317           93 PLLVQILHSGSVQGRVDAVTALHYLST-CKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEE--GRIA  169 (314)
Q Consensus        93 ~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~--~~~~  169 (314)
                      |.++++|.+++.++++.+.|+|.|++. ++..|..+.++|++++++.++.+....-.+..+++++|.|||++..  .-..
T Consensus       160 PlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~  239 (526)
T COG5064         160 PLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWS  239 (526)
T ss_pred             HHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchH
Confidence            999999999999999999999999995 4567888999999999999999876656788999999999998832  2233


Q ss_pred             HHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCC
Q 021317          170 ITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP  249 (314)
Q Consensus       170 i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~  249 (314)
                      -+  ..++|.|.+++-+.++++.-.|+|++..|+... ++.-+++.+.|..+.|++++.+.+..++..|.+.+.|+.-+.
T Consensus       240 ~i--sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~-~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~  316 (526)
T COG5064         240 NI--SQALPILAKLIYSRDPEVLVDACWAISYLSDGP-NEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGS  316 (526)
T ss_pred             HH--HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCc-HHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecC
Confidence            33  348999999999999999999999999999876 477889999999999999999999999999999999997655


Q ss_pred             c---hhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhh
Q 021317          250 Q---EKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELSMTRIQQRAAS  305 (314)
Q Consensus       250 ~---~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~~~~~~~~~~~~~~  305 (314)
                      .   +..+..|++..+-+.|.   +..++.+..|++.+.|+.+-+.|.-  +.+..+++
T Consensus       317 D~QTqviI~~G~L~a~~~lLs---~~ke~irKEaCWTiSNITAGnteqi--qavid~nl  370 (526)
T COG5064         317 DDQTQVIINCGALKAFRSLLS---SPKENIRKEACWTISNITAGNTEQI--QAVIDANL  370 (526)
T ss_pred             ccceehheecccHHHHHHHhc---ChhhhhhhhhheeecccccCCHHHH--HHHHhccc
Confidence            3   24567898887766555   3346789999999999997655543  33455554

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.91  E-value=3.4e-24  Score=184.57  Aligned_cols=266  Identities=15%  Similarity=0.165  Sum_probs=209.7

Q ss_pred             ccCCHHHHHHHHHHhHhhccCchhHH-HHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC-CChhHHhhcCcHHHH
Q 021317           18 TYFEGYARRLNLMGPLWQLSKTRNKV-KIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA-PNKPAIAASGAAPLL   95 (314)
Q Consensus        18 ~~~~~~~~~~a~~al~l~~~~~~~~~-~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~~~~~i~~~g~l~~L   95 (314)
                      +...+..|..|.|+|.+.+....++. .+++.|+||.++++|.+++.+++++++++|+|++.+. .+|..+.+.|+++++
T Consensus       125 ~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galepl  204 (526)
T COG5064         125 EIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPL  204 (526)
T ss_pred             hcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHH
Confidence            55667789999999995544445554 5558999999999999999999999999999999975 668888899999988


Q ss_pred             HHHhccCCH--HHHHHHHHHHHHhcC------------------------------------------CC-CCchhhhhc
Q 021317           96 VQILHSGSV--QGRVDAVTALHYLST------------------------------------------CK-ENSSPILDA  130 (314)
Q Consensus        96 v~lL~~~~~--~~~~~a~~~L~nLs~------------------------------------------~~-~~~~~i~~~  130 (314)
                      +.++.++..  ....++.|.|.||+.                                          .+ +....+.+.
T Consensus       205 L~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~  284 (526)
T COG5064         205 LGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDV  284 (526)
T ss_pred             HHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhc
Confidence            888765422  444555555555543                                          33 334456788


Q ss_pred             CCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHH
Q 021317          131 TAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKY  210 (314)
Q Consensus       131 g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~  210 (314)
                      |+.+.|+++|.+.+.  .++..+++.+.|+.++.+.+.+++-..|+++.+..+|.+....++..|||++.|++.++. +.
T Consensus       285 g~~~RLvElLs~~sa--~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnt-eq  361 (526)
T COG5064         285 GIPGRLVELLSHESA--KIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNT-EQ  361 (526)
T ss_pred             CCcHHHHHHhcCccc--cccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCH-HH
Confidence            999999999998654  778899999999999988877766589999999999999888999999999999999875 67


Q ss_pred             HHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCch--h----hcchhhhHHHHHHHhhcCCCHHHHHHHHHHHH
Q 021317          211 RQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE--K----RLSSSVLEKIVYDIAARVDGADKAAETAKRLL  284 (314)
Q Consensus       211 ~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~--~----~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L  284 (314)
                      .+++++++.+|+|++++..-+-.+++.|+|++.|...+...  .    ++..|++.++...|. ..  +.+.-+-|..++
T Consensus       362 iqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~-~~--dNkiiev~LD~~  438 (526)
T COG5064         362 IQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLD-VV--DNKIIEVALDAI  438 (526)
T ss_pred             HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHh-cc--CccchhhhHHHH
Confidence            78899999999999999999999999999999999876632  1    345677777654443 11  224556666666


Q ss_pred             HHHHH
Q 021317          285 QDMVQ  289 (314)
Q Consensus       285 ~~l~~  289 (314)
                      .+..+
T Consensus       439 eniLk  443 (526)
T COG5064         439 ENILK  443 (526)
T ss_pred             HHHHh
Confidence            66654

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.90  E-value=1.1e-21  Score=189.21  Aligned_cols=267  Identities=21%  Similarity=0.202  Sum_probs=220.4

Q ss_pred             HHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhcc
Q 021317           22 GYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHS  101 (314)
Q Consensus        22 ~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~  101 (314)
                      ++....+...|.+.+.++.+...+.+.|+|+.|+++|++++.++...++.+|.+|+.+.+||..+.+.|++++|++++.+
T Consensus       263 eqLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s  342 (708)
T PF05804_consen  263 EQLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPS  342 (708)
T ss_pred             HHHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcC
Confidence            34444555556688899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHH
Q 021317          102 GSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLV  181 (314)
Q Consensus       102 ~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv  181 (314)
                      ++..++..++++|.|||.++++|..+++.|++|.|+.+|.+++    .+..++++|++||.+++.|..+. ..+++|.++
T Consensus       343 ~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~----~~~val~iLy~LS~dd~~r~~f~-~TdcIp~L~  417 (708)
T PF05804_consen  343 ENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN----FREVALKILYNLSMDDEARSMFA-YTDCIPQLM  417 (708)
T ss_pred             CCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc----hHHHHHHHHHHhccCHhhHHHHh-hcchHHHHH
Confidence            9999999999999999999999999999999999999998753    34569999999999999999888 689999999


Q ss_pred             HHhhcC-CHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHh-hhcCCHHHHHHHHHHHHHhhcCCc-hhhcchhh
Q 021317          182 ETVEDG-SLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRL-TVEGTFEAQERARTLLDLLRDTPQ-EKRLSSSV  258 (314)
Q Consensus       182 ~ll~~~-~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~l-l~~~~~~~~~~A~~~L~~l~~~~~-~~~~~~~~  258 (314)
                      .++.++ ++.+...++..+.|++.+.  .+.+.+.+.|+++.|++. ++..++-    -..+++|++.|.. .+..-...
T Consensus       418 ~~Ll~~~~~~v~~eliaL~iNLa~~~--rnaqlm~~g~gL~~L~~ra~~~~D~l----LlKlIRNiS~h~~~~k~~f~~~  491 (708)
T PF05804_consen  418 QMLLENSEEEVQLELIALLINLALNK--RNAQLMCEGNGLQSLMKRALKTRDPL----LLKLIRNISQHDGPLKELFVDF  491 (708)
T ss_pred             HHHHhCCCccccHHHHHHHHHHhcCH--HHHHHHHhcCcHHHHHHHHHhcccHH----HHHHHHHHHhcCchHHHHHHHH
Confidence            987654 4666677888999999876  568899999999999984 4444433    2359999999884 33333456


Q ss_pred             hHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 021317          259 LEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELSMTRIQQRA  303 (314)
Q Consensus       259 ~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~~~~~~~~~~~~  303 (314)
                      +..++..+.  ...+++..-.+..+|.|+.-  ++.++.++.++.
T Consensus       492 i~~L~~~v~--~~~~ee~~vE~LGiLaNL~~--~~ld~~~ll~~~  532 (708)
T PF05804_consen  492 IGDLAKIVS--SGDSEEFVVECLGILANLTI--PDLDWAQLLQEY  532 (708)
T ss_pred             HHHHHHHhh--cCCcHHHHHHHHHHHHhccc--CCcCHHHHHHhC
Confidence            666665554  23357778888888888883  456777776653

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.83  E-value=1.9e-18  Score=166.97  Aligned_cols=272  Identities=19%  Similarity=0.166  Sum_probs=220.1

Q ss_pred             eeeccccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcH
Q 021317           13 EVFMETYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAA   92 (314)
Q Consensus        13 ~v~~l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l   92 (314)
                      ++.+|++++.+....++..|..++...+||..|.+.|++++|++++.+++.+++..++++|.|||.+++.|..+++.|.+
T Consensus       295 Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlI  374 (708)
T PF05804_consen  295 LVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLI  374 (708)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCc
Confidence            46778999999999999999977788899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHh
Q 021317           93 PLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITN  172 (314)
Q Consensus        93 ~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~  172 (314)
                      |.|+.+|.+++  .+..++.+|.+||.++++|..+...+++|.+++++.++... .+...+++++.||+.++.+.+.+. 
T Consensus       375 PkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~-~v~~eliaL~iNLa~~~rnaqlm~-  450 (708)
T PF05804_consen  375 PKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEE-EVQLELIALLINLALNKRNAQLMC-  450 (708)
T ss_pred             HHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCc-cccHHHHHHHHHHhcCHHHHHHHH-
Confidence            99999998654  56779999999999999999999999999999998775432 444557788888888888887777 


Q ss_pred             ccCCHHHHHHHh-------------------------------------hc-CCHHHHHHHHHHHHHhhccCcHHHHHHH
Q 021317          173 SDGGILTLVETV-------------------------------------ED-GSLVSTQHAVGALLSLCQSCRDKYRQLI  214 (314)
Q Consensus       173 ~~g~v~~Lv~ll-------------------------------------~~-~~~~~~~~A~~~L~~L~~~~~~~~~~~i  214 (314)
                      +.|+++.|+...                                     .. ++++..-.++++|+||+..+. +..+.+
T Consensus       451 ~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~l-d~~~ll  529 (708)
T PF05804_consen  451 EGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDL-DWAQLL  529 (708)
T ss_pred             hcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCc-CHHHHH
Confidence            566666554322                                     21 245677789999999987653 455666


Q ss_pred             HHcCChHHHHHhhhcC--CHHHHHHHHHHHHHhhcCCch--hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Q 021317          215 LKEGAIPGLLRLTVEG--TFEAQERARTLLDLLRDTPQE--KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR  290 (314)
Q Consensus       215 ~~~g~v~~Lv~ll~~~--~~~~~~~A~~~L~~l~~~~~~--~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~  290 (314)
                      .+.+.+|.|..++..+  .+.+...++..+..++..+..  .....|.++.++..+...++ +++.--+-.-++.+|..|
T Consensus       530 ~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqe-DdE~VlQil~~f~~ll~h  608 (708)
T PF05804_consen  530 QEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQE-DDEIVLQILYVFYQLLFH  608 (708)
T ss_pred             HhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCc-hHHHHHHHHHHHHHHHcC
Confidence            6789999999988765  467888889999998876643  34467899988888875554 355556666667777766

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.79  E-value=1.2e-18  Score=171.93  Aligned_cols=228  Identities=22%  Similarity=0.237  Sum_probs=198.1

Q ss_pred             HHHHHHHHHHhH-hhccCchhHHHHH-hcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC-CCC-hhHHhhcCcHHHHHH
Q 021317           22 GYARRLNLMGPL-WQLSKTRNKVKIA-TAGAIPPLVELLKFQNGTLRELAAAAILTLSAA-APN-KPAIAASGAAPLLVQ   97 (314)
Q Consensus        22 ~~~~~~a~~al~-l~~~~~~~~~~l~-~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~-~~~i~~~g~l~~Lv~   97 (314)
                      -.++.++..+|. ++.++..||..++ .-|+++.+|..|.+...++....+.+|+||++. |.| |..+.+.|-+..|+.
T Consensus       365 ~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~  444 (2195)
T KOG2122|consen  365 NALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAA  444 (2195)
T ss_pred             HHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHH
Confidence            467999999999 8889999999998 579999999999988888888889999999996 444 666678899999988


Q ss_pred             H-hccCCHHHHHHHHHHHHHhc-CCCCCchhhhh-cCCcHHHHHHhhcc--CCchHHHHHHHHHHHHhcCC----hhhhh
Q 021317           98 I-LHSGSVQGRVDAVTALHYLS-TCKENSSPILD-ATAVPPLINLLKDC--KKYSKFAEKATALLEILSSS----EEGRI  168 (314)
Q Consensus        98 l-L~~~~~~~~~~a~~~L~nLs-~~~~~~~~i~~-~g~i~~Lv~lL~~~--~~~~~~~~~a~~~L~~L~~~----~~~~~  168 (314)
                      . |+...+......+.+||||+ .+.+||..|-. .|++..||.+|...  ...-.+.+.+.++|.|++..    .+.|+
T Consensus       445 ~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQ  524 (2195)
T KOG2122|consen  445 CALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQ  524 (2195)
T ss_pred             HHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHH
Confidence            7 55667778889999999999 77899999998 79999999999764  23347889999999987655    44455


Q ss_pred             HHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 021317          169 AITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDT  248 (314)
Q Consensus       169 ~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~  248 (314)
                      .+. ++.++..|+.+|++.+-.++.++|++||||+..++ +.++.+++.|+++.|..++++.+.++-+.++.+|.||-.+
T Consensus       525 ILR-~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p-~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~  602 (2195)
T KOG2122|consen  525 ILR-RHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSP-EDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNF  602 (2195)
T ss_pred             HHH-HhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCH-HHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcC
Confidence            454 79999999999999999999999999999999886 6799999999999999999999999999999999999888


Q ss_pred             Cch
Q 021317          249 PQE  251 (314)
Q Consensus       249 ~~~  251 (314)
                      .+.
T Consensus       603 RPA  605 (2195)
T KOG2122|consen  603 RPA  605 (2195)
T ss_pred             Cch
Confidence            754

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.77  E-value=6.8e-17  Score=153.35  Aligned_cols=282  Identities=20%  Similarity=0.192  Sum_probs=214.6

Q ss_pred             eeccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC---CCChhHHhhc
Q 021317           14 VFMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA---APNKPAIAAS   89 (314)
Q Consensus        14 v~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~---~~~~~~i~~~   89 (314)
                      +.||.+.++.+|-.|..-+. ++.++.+-|..+.+.|+|+.||.+|++.+.+++.+|+.+|.||...   ++||-.|.+.
T Consensus       239 i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~  318 (717)
T KOG1048|consen  239 ISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKEL  318 (717)
T ss_pred             HHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhc
Confidence            46778889999999988888 8889999999999999999999999999999999999999999984   4689999999


Q ss_pred             CcHHHHHHHhcc-CCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhcc--------CC----chHHHHHHHHH
Q 021317           90 GAAPLLVQILHS-GSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDC--------KK----YSKFAEKATAL  156 (314)
Q Consensus        90 g~l~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~--------~~----~~~~~~~a~~~  156 (314)
                      ++|+.++++|+. .|.++++...++|+||+.++..|..|+.. ++..|.+-....        .+    +..+..+++++
T Consensus       319 ~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgc  397 (717)
T KOG1048|consen  319 NGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGC  397 (717)
T ss_pred             CChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccceeeehhhhh
Confidence            999999999997 79999999999999999997777666653 344444433211        11    23556677777


Q ss_pred             HHHhcC-ChhhhhHHHhccCCHHHHHHHhhc------CCHH---------------------------------------
Q 021317          157 LEILSS-SEEGRIAITNSDGGILTLVETVED------GSLV---------------------------------------  190 (314)
Q Consensus       157 L~~L~~-~~~~~~~i~~~~g~v~~Lv~ll~~------~~~~---------------------------------------  190 (314)
                      |.|++. ..+.|+++-...|.|+.|+..+++      .+.+                                       
T Consensus       398 LRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~  477 (717)
T KOG1048|consen  398 LRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGP  477 (717)
T ss_pred             hccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCC
Confidence            777776 466777776666777777766641      1223                                       


Q ss_pred             ---------------------------------------------------------HHHHHHHHHHHhhccCc---HHH
Q 021317          191 ---------------------------------------------------------STQHAVGALLSLCQSCR---DKY  210 (314)
Q Consensus       191 ---------------------------------------------------------~~~~A~~~L~~L~~~~~---~~~  210 (314)
                                                                               +.|.++++|.||+....   ...
T Consensus       478 ~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~  557 (717)
T KOG1048|consen  478 PAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYM  557 (717)
T ss_pred             cccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHH
Confidence                                                                     44555555555554321   133


Q ss_pred             HHHH-HHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCch-hhcchhhhHHHHHHHhhcCC---CHHHHHHHHHHHHH
Q 021317          211 RQLI-LKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE-KRLSSSVLEKIVYDIAARVD---GADKAAETAKRLLQ  285 (314)
Q Consensus       211 ~~~i-~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~-~~~~~~~~~~lv~~l~~~~~---~~~~~~~~A~~~L~  285 (314)
                      +..+ ..+.+.+.|+++++.+++.+...++.+|+||+.+... ..+.-++++.+|.-|--...   -+++.-..+.-.|.
T Consensus       558 ~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~  637 (717)
T KOG1048|consen  558 RGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLN  637 (717)
T ss_pred             HhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHH
Confidence            3344 4467899999999999999999999999999988754 56667788888877753222   23778889999999


Q ss_pred             HHHHHHHHHhH
Q 021317          286 DMVQRSMELSM  296 (314)
Q Consensus       286 ~l~~~s~~~~~  296 (314)
                      +++..+++.-.
T Consensus       638 niv~~~~~nAk  648 (717)
T KOG1048|consen  638 NIVRKNVLNAK  648 (717)
T ss_pred             HHHHHhHHHHH
Confidence            99977766543

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.76  E-value=9.7e-16  Score=132.42  Aligned_cols=284  Identities=15%  Similarity=0.187  Sum_probs=227.7

Q ss_pred             cccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcC--CCHHHHHHHHHHHHHhcc-CCCChhHHhhcCcH
Q 021317           17 ETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKF--QNGTLRELAAAAILTLSA-AAPNKPAIAASGAA   92 (314)
Q Consensus        17 l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~--~~~~~~~~a~~~L~~La~-~~~~~~~i~~~g~l   92 (314)
                      -++++...-.+++.+|. ++.+.|+    +.+..+...++.+|..  ++.++......++..-+. +..||..+.+.+++
T Consensus       116 a~~~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il  191 (461)
T KOG4199|consen  116 AESPNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKIL  191 (461)
T ss_pred             hhCCchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHH
Confidence            46778888899999988 6666555    4567778889999853  466777777777776444 67899999999999


Q ss_pred             HHHHHHhcc-CCHHHHHHHHHHHHHhcCCCCCch----------hhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhc
Q 021317           93 PLLVQILHS-GSVQGRVDAVTALHYLSTCKENSS----------PILDATAVPPLINLLKDCKKYSKFAEKATALLEILS  161 (314)
Q Consensus        93 ~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~~~~----------~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~  161 (314)
                      |.+...|.. +..++...++++++-|..+++.|.          .|++.|++..|++.++.+-+ ++.....+.+|..|+
T Consensus       192 ~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~d-p~~L~~l~~tl~~lA  270 (461)
T KOG4199|consen  192 ELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGID-PDSLVSLSTTLKALA  270 (461)
T ss_pred             HHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCC-ccHHHHHHHHHHHHH
Confidence            999977655 455688899999999998887663          46668899999999998755 467778889999999


Q ss_pred             CChhhhhHHHhccCCHHHHHHHhhcCC----HHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhh-c-CCHHHH
Q 021317          162 SSEEGRIAITNSDGGILTLVETVEDGS----LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTV-E-GTFEAQ  235 (314)
Q Consensus       162 ~~~~~~~~i~~~~g~v~~Lv~ll~~~~----~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~-~-~~~~~~  235 (314)
                      ..++.++.+. +.|+++.|++++.+.+    ..+...++..|+.|+.++  .++..+++.|+.+.++.++. + .+|.+-
T Consensus       271 Vr~E~C~~I~-e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~D--svKs~IV~~gg~~~ii~l~~~h~~~p~Vi  347 (461)
T KOG4199|consen  271 VRDEICKSIA-ESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSD--SVKSTIVEKGGLDKIITLALRHSDDPLVI  347 (461)
T ss_pred             HHHHHHHHHH-HccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCC--chHHHHHHhcChHHHHHHHHHcCCChHHH
Confidence            9999999999 8999999999998733    345678899999999776  67999999999999999654 3 568888


Q ss_pred             HHHHHHHHHhhcCCch---hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHhhh
Q 021317          236 ERARTLLDLLRDTPQE---KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELS-------MTRIQQRAAS  305 (314)
Q Consensus       236 ~~A~~~L~~l~~~~~~---~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~~~~-------~~~~~~~~~~  305 (314)
                      +.++.++.-|+-..++   +.++.|+-+..|+.|-.+.. -...++.|..+++|++.||-+.+       .+.++.-|..
T Consensus       348 ~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~-~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~  426 (461)
T KOG4199|consen  348 QEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPV-AAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKA  426 (461)
T ss_pred             HHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHh
Confidence            8999999888854432   67788888888888886553 25678999999999999987766       5667777777


Q ss_pred             cCCC
Q 021317          306 SAPS  309 (314)
Q Consensus       306 ~~~~  309 (314)
                      .||+
T Consensus       427 ~h~t  430 (461)
T KOG4199|consen  427 NHET  430 (461)
T ss_pred             cCcc
Confidence            7775

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.76  E-value=2.1e-16  Score=136.45  Aligned_cols=268  Identities=16%  Similarity=0.168  Sum_probs=212.9

Q ss_pred             ccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCC-CHHHHHHHHHHHHHhccCCCC----------h
Q 021317           16 METYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQ-NGTLRELAAAAILTLSAAAPN----------K   83 (314)
Q Consensus        16 ~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~La~~~~~----------~   83 (314)
                      -++.++.++....+..+. -+..++.||..+.+.++.|.+.+.|... ...+.....++++-|..+|+.          .
T Consensus       155 ~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hA  234 (461)
T KOG4199|consen  155 ALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHA  234 (461)
T ss_pred             hcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHH
Confidence            345567777888888888 7778999999999999999999888644 344555678899998887653          4


Q ss_pred             hHHhhcCcHHHHHHHhccC-CHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCch--HHHHHHHHHHHHh
Q 021317           84 PAIAASGAAPLLVQILHSG-SVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYS--KFAEKATALLEIL  160 (314)
Q Consensus        84 ~~i~~~g~l~~Lv~lL~~~-~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~--~~~~~a~~~L~~L  160 (314)
                      +.|+..|++..|++.+.-+ +|.+...++.+|..|+..++.++.|.+.|++..|+.++.+++..+  .+...++..|..|
T Consensus       235 r~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLral  314 (461)
T KOG4199|consen  235 RTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRAL  314 (461)
T ss_pred             HHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHH
Confidence            5667788999999999865 788999999999999999999999999999999999999865432  2556789999999


Q ss_pred             cCChhhhhHHHhccCCHHHHHHHhh--cCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcC--CHHHHH
Q 021317          161 SSSEEGRIAITNSDGGILTLVETVE--DGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEG--TFEAQE  236 (314)
Q Consensus       161 ~~~~~~~~~i~~~~g~v~~Lv~ll~--~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~~  236 (314)
                      +..++++..++ +.|+.+.++.++.  ++++.+.+.++.++.-||-..| +....+++.|+-...++.++..  ...+|+
T Consensus       315 AG~DsvKs~IV-~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~p-dhsa~~ie~G~a~~avqAmkahP~~a~vQr  392 (461)
T KOG4199|consen  315 AGSDSVKSTIV-EKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSP-DHSAKAIEAGAADLAVQAMKAHPVAAQVQR  392 (461)
T ss_pred             hCCCchHHHHH-HhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCc-chHHHHHhcchHHHHHHHHHhCcHHHHHHH
Confidence            99999999999 7999999999884  4678999999999999999887 6788899999999999988875  367899


Q ss_pred             HHHHHHHHhhcCCch--hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 021317          237 RARTLLDLLRDTPQE--KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMV  288 (314)
Q Consensus       237 ~A~~~L~~l~~~~~~--~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~  288 (314)
                      +|++.++|+..++.+  +..-.-++|.++..-.   ...+.....|+.+|+-|-
T Consensus       393 nac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~---~~h~tce~~akaALRDLG  443 (461)
T KOG4199|consen  393 NACNMIRNIVVRSAENRTILLANGIEKLIRTAK---ANHETCEAAAKAALRDLG  443 (461)
T ss_pred             HHHHHHHHHHHhhhhccchHHhccHHHHHHHHH---hcCccHHHHHHHHHHhcC
Confidence            999999999876643  3333334455544322   112344556667777665

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.74  E-value=2.5e-17  Score=162.77  Aligned_cols=264  Identities=19%  Similarity=0.157  Sum_probs=211.7

Q ss_pred             HHHH-HHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcC-----C-------CHHHHHHHHHHHHHhccCC-CChhHHh-
Q 021317           23 YARR-LNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKF-----Q-------NGTLRELAAAAILTLSAAA-PNKPAIA-   87 (314)
Q Consensus        23 ~~~~-~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~-----~-------~~~~~~~a~~~L~~La~~~-~~~~~i~-   87 (314)
                      +.|. .|+..|.-.+-+++.|..|.+.|+++.+-+++.-     +       .-.+|..+..+|.||.+-+ .||..+. 
T Consensus       312 ~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs  391 (2195)
T KOG2122|consen  312 EHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCS  391 (2195)
T ss_pred             chhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhh
Confidence            3344 6677777777889999999999999999887721     1       2468999999999999976 5777776 


Q ss_pred             hcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC-CCc-hhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCC-h
Q 021317           88 ASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCK-ENS-SPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-E  164 (314)
Q Consensus        88 ~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~-~  164 (314)
                      ..|++..+|..|.+...++....+.+|+||++.. .|- +.+.+.|-+..|+..--....+ .-....+.+||||+.+ .
T Consensus       392 ~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kE-sTLKavLSALWNLSAHct  470 (2195)
T KOG2122|consen  392 QRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKE-STLKAVLSALWNLSAHCT  470 (2195)
T ss_pred             hhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhccc-chHHHHHHHHhhhhhccc
Confidence            6799999999999999999999999999999654 354 4455689999988876554333 3356899999999988 7


Q ss_pred             hhhhHHHhccCCHHHHHHHhhc----CCHHHHHHHHHHHHHhhccC--cHHHHHHHHHcCChHHHHHhhhcCCHHHHHHH
Q 021317          165 EGRIAITNSDGGILTLVETVED----GSLVSTQHAVGALLSLCQSC--RDKYRQLILKEGAIPGLLRLTVEGTFEAQERA  238 (314)
Q Consensus       165 ~~~~~i~~~~g~v~~Lv~ll~~----~~~~~~~~A~~~L~~L~~~~--~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A  238 (314)
                      +||..|..-.|++..|+.+|.-    ....+.+.|-++|.|++..-  .+.+|+.+.+.+++..|++.|++.+-.+..++
T Consensus       471 eNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNa  550 (2195)
T KOG2122|consen  471 ENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNA  550 (2195)
T ss_pred             ccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecc
Confidence            8999998778999999999963    34678899999999987631  23789999999999999999999999999999


Q ss_pred             HHHHHHhhcCCc---hhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Q 021317          239 RTLLDLLRDTPQ---EKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR  290 (314)
Q Consensus       239 ~~~L~~l~~~~~---~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~  290 (314)
                      +++||||.-.+.   +-+.+.|++..+...+.   .......+-++.+|+|+..+
T Consensus       551 CGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIh---SKhkMIa~GSaaALrNLln~  602 (2195)
T KOG2122|consen  551 CGTLWNLSARSPEDQQMLWDDGAVPMLRNLIH---SKHKMIAMGSAAALRNLLNF  602 (2195)
T ss_pred             hhhhhhhhcCCHHHHHHHHhcccHHHHHHHHh---hhhhhhhhhHHHHHHHHhcC
Confidence            999999975442   23456888887655554   33356778888899998854

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.73  E-value=5.1e-16  Score=134.01  Aligned_cols=198  Identities=20%  Similarity=0.199  Sum_probs=175.1

Q ss_pred             HhcCCcHHHHHHhcC-CCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCc
Q 021317           46 ATAGAIPPLVELLKF-QNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENS  124 (314)
Q Consensus        46 ~~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~  124 (314)
                      .+++-++.|+.+|+. .+|.+++.+..++.|.+.++.++..|.+.|+++.+..+|.++++.++..|+.+|.|++.+.+|+
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~   88 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ   88 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence            566778999999984 5899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 021317          125 SPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQ  204 (314)
Q Consensus       125 ~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~  204 (314)
                      ..|-.  .++.+++.+.+...+..++..++++|.||+..++.+..+.   +.++.++.+|.+|+..++..++.+|.||+.
T Consensus        89 ~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~---~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~  163 (254)
T PF04826_consen   89 EQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA---NYIPDLLSLLSSGSEKTKVQVLKVLVNLSE  163 (254)
T ss_pred             HHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH---hhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence            98754  5888888777654455788899999999999888877775   379999999999999999999999999998


Q ss_pred             cCcHHHHHHHHHcCChHHHHHhhhcC-CHHHHHHHHHHHHHhhcCCc
Q 021317          205 SCRDKYRQLILKEGAIPGLLRLTVEG-TFEAQERARTLLDLLRDTPQ  250 (314)
Q Consensus       205 ~~~~~~~~~i~~~g~v~~Lv~ll~~~-~~~~~~~A~~~L~~l~~~~~  250 (314)
                      .+  .+.+.+...+++..++.++... +.++-..+.....|+.++-.
T Consensus       164 np--~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~  208 (254)
T PF04826_consen  164 NP--DMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIK  208 (254)
T ss_pred             CH--HHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhC
Confidence            75  6688888889999999998875 67888899999999977664

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.69  E-value=4.8e-15  Score=128.00  Aligned_cols=185  Identities=16%  Similarity=0.143  Sum_probs=162.1

Q ss_pred             eccc-cCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHH
Q 021317           15 FMET-YFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAP   93 (314)
Q Consensus        15 ~~l~-~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~   93 (314)
                      .+|+ +.||.+|+.++.++.+....+.++..+.+.|+++.+..+|.++++.+++.|+.+|.|++.+.+++..|..  .++
T Consensus        19 ~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~--~i~   96 (254)
T PF04826_consen   19 CLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKM--YIP   96 (254)
T ss_pred             HHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHH--HHH
Confidence            3444 5689999999999998888999999999999999999999999999999999999999999999998853  688


Q ss_pred             HHHHHhccC--CHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHH
Q 021317           94 LLVQILHSG--SVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAIT  171 (314)
Q Consensus        94 ~Lv~lL~~~--~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~  171 (314)
                      .+++.+.+.  +..++..++++|.||+..++.+..+..  .++.++.+|.+|+.  ..+..++.+|.||+.+++..+.++
T Consensus        97 ~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~~--~~k~~vLk~L~nLS~np~~~~~Ll  172 (254)
T PF04826_consen   97 QVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGSE--KTKVQVLKVLVNLSENPDMTRELL  172 (254)
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCCh--HHHHHHHHHHHHhccCHHHHHHHH
Confidence            888866554  678999999999999988877777654  79999999999866  778899999999999999988888


Q ss_pred             hccCCHHHHHHHhhcC-CHHHHHHHHHHHHHhhccC
Q 021317          172 NSDGGILTLVETVEDG-SLVSTQHAVGALLSLCQSC  206 (314)
Q Consensus       172 ~~~g~v~~Lv~ll~~~-~~~~~~~A~~~L~~L~~~~  206 (314)
                       ..++++.++.++... +.++...++..+.|+..+-
T Consensus       173 -~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~  207 (254)
T PF04826_consen  173 -SAQVLSSFLSLFNSSESKENLLRVLTFFENINENI  207 (254)
T ss_pred             -hccchhHHHHHHccCCccHHHHHHHHHHHHHHHhh
Confidence             688999999999775 5777889999999997653

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.58  E-value=1.7e-14  Score=137.23  Aligned_cols=193  Identities=23%  Similarity=0.267  Sum_probs=164.6

Q ss_pred             cHHHHHHhcCCCHHHHHHHHHHHHHhccCC-CChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC---CCCchh
Q 021317           51 IPPLVELLKFQNGTLRELAAAAILTLSAAA-PNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC---KENSSP  126 (314)
Q Consensus        51 v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~---~~~~~~  126 (314)
                      +|..+.+|.+.++.++..|+.-+..+++.+ ..|..+.+-|+|+.|+.+|++++.+++.+|+++|+||...   ++|+..
T Consensus       235 lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKla  314 (717)
T KOG1048|consen  235 LPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLA  314 (717)
T ss_pred             cHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchh
Confidence            678899999999999999999999999865 5688888999999999999999999999999999999954   358999


Q ss_pred             hhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhc-------C-------CHHHH
Q 021317          127 ILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVED-------G-------SLVST  192 (314)
Q Consensus       127 i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~-------~-------~~~~~  192 (314)
                      |.+.++++.++.+|+...+ .++++..+++||||++++..+..++.  .+++.|-.-+-.       +       ...+-
T Consensus       315 i~~~~Gv~~l~~~Lr~t~D-~ev~e~iTg~LWNLSS~D~lK~~ii~--~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf  391 (717)
T KOG1048|consen  315 IKELNGVPTLVRLLRHTQD-DEVRELITGILWNLSSNDALKMLIIT--SALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF  391 (717)
T ss_pred             hhhcCChHHHHHHHHhhcc-hHHHHHHHHHHhcccchhHHHHHHHH--HHHHHHHHhhcccccccCCCCcccccccceee
Confidence            9999999999999997433 38899999999999999888888873  467766654421       1       14567


Q ss_pred             HHHHHHHHHhhccCcHHHHHHHHH-cCChHHHHHhhhc------CCHHHHHHHHHHHHHhhc
Q 021317          193 QHAVGALLSLCQSCRDKYRQLILK-EGAIPGLLRLTVE------GTFEAQERARTLLDLLRD  247 (314)
Q Consensus       193 ~~A~~~L~~L~~~~~~~~~~~i~~-~g~v~~Lv~ll~~------~~~~~~~~A~~~L~~l~~  247 (314)
                      .++.++|+|+++.. ++.|+.|.+ .|.|..|+.++++      .+....++|+-+|+||+-
T Consensus       392 ~n~tgcLRNlSs~~-~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSY  452 (717)
T KOG1048|consen  392 RNVTGCLRNLSSAG-QEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSY  452 (717)
T ss_pred             ehhhhhhccccchh-HHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCc
Confidence            89999999999876 488999998 8999999998873      467888999999999974

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.48  E-value=9.6e-12  Score=118.65  Aligned_cols=272  Identities=14%  Similarity=0.092  Sum_probs=212.1

Q ss_pred             eeeccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCc
Q 021317           13 EVFMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGA   91 (314)
Q Consensus        13 ~v~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~   91 (314)
                      ....|..+++.+|+.++..+. ...+++.....+.+.+.++.++.++.+++.++...|+.+|.+++.++.....+...+.
T Consensus        82 L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~  161 (503)
T PF10508_consen   82 LQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNL  161 (503)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcch
Confidence            346788899999999999998 4555555456667899999999999999999999999999999999888888889999


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHhc-CCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHH
Q 021317           92 APLLVQILHSGSVQGRVDAVTALHYLS-TCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAI  170 (314)
Q Consensus        92 l~~Lv~lL~~~~~~~~~~a~~~L~nLs-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i  170 (314)
                      ++.|..++..++..+|...+.++.+++ .+++....+.+.|.++.++..+.+.  +.-++.+++.+|..|+..+.+...+
T Consensus       162 ~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~d--DiLvqlnalell~~La~~~~g~~yL  239 (503)
T PF10508_consen  162 LSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSD--DILVQLNALELLSELAETPHGLQYL  239 (503)
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCc--cHHHHHHHHHHHHHHHcChhHHHHH
Confidence            999999999988899999999999998 5666777788899999999999884  3367889999999999999999999


Q ss_pred             HhccCCHHHHHHHhhcCC--H---HHH-HHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHH
Q 021317          171 TNSDGGILTLVETVEDGS--L---VST-QHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDL  244 (314)
Q Consensus       171 ~~~~g~v~~Lv~ll~~~~--~---~~~-~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~  244 (314)
                      . +.|+++.|..++.+.+  +   .+. -..+...++++...+.......  ...+..|.+++.+.|+..+..|..++..
T Consensus       240 ~-~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~--p~~~~~l~~~~~s~d~~~~~~A~dtlg~  316 (503)
T PF10508_consen  240 E-QQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELY--PAFLERLFSMLESQDPTIREVAFDTLGQ  316 (503)
T ss_pred             H-hCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHH--HHHHHHHHHHhCCCChhHHHHHHHHHHH
Confidence            8 6999999999997532  2   111 2233556777765432222111  3355566667778899999999999999


Q ss_pred             hhcCCchh-hc--c-hhhhHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHH
Q 021317          245 LRDTPQEK-RL--S-SSVLEKIVYDIAAR-VDGADKAAETAKRLLQDMVQ  289 (314)
Q Consensus       245 l~~~~~~~-~~--~-~~~~~~lv~~l~~~-~~~~~~~~~~A~~~L~~l~~  289 (314)
                      ++...+++ .+  . ....+..+...... ..++.+.+-++-.+|.++..
T Consensus       317 igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~  366 (503)
T PF10508_consen  317 IGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILT  366 (503)
T ss_pred             HhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence            99777653 22  2 33555555555533 35556789999999999954

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.47  E-value=1.6e-12  Score=99.68  Aligned_cols=118  Identities=23%  Similarity=0.345  Sum_probs=106.3

Q ss_pred             hhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCC-hhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 021317          126 PILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQ  204 (314)
Q Consensus       126 ~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~  204 (314)
                      .+++.|+++.+++++.+++.  .++..++.+|.+++.+ ++.+..+. +.|+++.++.+|.++++.++..|+++|++|+.
T Consensus         2 ~~~~~~~i~~l~~~l~~~~~--~~~~~a~~~l~~l~~~~~~~~~~~~-~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~   78 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSDE--NVQREAAWALSNLSAGNNDNIQAVV-EAGGLPALVQLLKSEDEEVVKAALWALRNLAA   78 (120)
T ss_pred             hHHHcCChHHHHHHHHcCCH--HHHHHHHHHHHHHhcCCHHHHHHHH-HCCChHHHHHHHhCCCHHHHHHHHHHHHHHcc
Confidence            46788999999999998753  7889999999999998 77788887 68999999999999999999999999999998


Q ss_pred             cCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 021317          205 SCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRD  247 (314)
Q Consensus       205 ~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~  247 (314)
                      ..+ ..+..+.+.|+++.|++++.+.+..+++.|.++|.+|+.
T Consensus        79 ~~~-~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          79 GPE-DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             CcH-HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence            864 667888889999999999999999999999999999863

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.47  E-value=8.1e-13  Score=101.29  Aligned_cols=117  Identities=27%  Similarity=0.405  Sum_probs=104.9

Q ss_pred             HHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC-CCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCC
Q 021317           85 AIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS  163 (314)
Q Consensus        85 ~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~  163 (314)
                      .+.+.|+++.++++|.++++.++..++.+|.+++.+ ++.+..+.+.|+++.+++++.+++  ..++..++++|+|++.+
T Consensus         2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~--~~v~~~a~~~L~~l~~~   79 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSED--EEVVKAALWALRNLAAG   79 (120)
T ss_pred             hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCC--HHHHHHHHHHHHHHccC
Confidence            467889999999999999999999999999999976 788888999999999999999864  48899999999999998


Q ss_pred             hhh-hhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 021317          164 EEG-RIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQ  204 (314)
Q Consensus       164 ~~~-~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~  204 (314)
                      .+. +..+. +.|+++.+++++.+.+..+++.++++|.+|+.
T Consensus        80 ~~~~~~~~~-~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          80 PEDNKLIVL-EAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             cHHHHHHHH-HCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence            754 55555 78999999999999999999999999999973

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.41  E-value=5.3e-11  Score=113.60  Aligned_cols=264  Identities=16%  Similarity=0.133  Sum_probs=195.6

Q ss_pred             ccccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCC-hhHHhhcCcHHH
Q 021317           16 METYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPN-KPAIAASGAAPL   94 (314)
Q Consensus        16 ~l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~-~~~i~~~g~l~~   94 (314)
                      -+++.+.+....++..|..+.........  ..+..+.|...|.++++.++..++..|.+++.+++. ...+.+.+.++.
T Consensus        46 ~L~~~~~e~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~  123 (503)
T PF10508_consen   46 CLNTSNREQVELICDILKRLLSALSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPL  123 (503)
T ss_pred             HHhhcChHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHH
Confidence            35566667777777777733222222222  556778999999999999999999999999987765 444568999999


Q ss_pred             HHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhh-hhHHHhc
Q 021317           95 LVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEG-RIAITNS  173 (314)
Q Consensus        95 Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~-~~~i~~~  173 (314)
                      ++.++.+++..+...|+.+|.+|+..+.....+.+.+.++.|..++...++  .++..+..++.+++...+. ...+. +
T Consensus       124 i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~--~vR~Rv~el~v~i~~~S~~~~~~~~-~  200 (503)
T PF10508_consen  124 IIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSD--IVRCRVYELLVEIASHSPEAAEAVV-N  200 (503)
T ss_pred             HHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCH--HHHHHHHHHHHHHHhcCHHHHHHHH-h
Confidence            999999999999999999999999988888888888889999999988544  5667788999999877554 55555 7


Q ss_pred             cCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcC--CH---HHHHHHH-HHHHHhhc
Q 021317          174 DGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEG--TF---EAQERAR-TLLDLLRD  247 (314)
Q Consensus       174 ~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~---~~~~~A~-~~L~~l~~  247 (314)
                      .|.++.++..+++++.-++.+|+.+|..|+..+  .+.+.+.+.|+++.|..++.+.  +|   ..--.+. ....+++.
T Consensus       201 sgll~~ll~eL~~dDiLvqlnalell~~La~~~--~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~  278 (503)
T PF10508_consen  201 SGLLDLLLKELDSDDILVQLNALELLSELAETP--HGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLAR  278 (503)
T ss_pred             ccHHHHHHHHhcCccHHHHHHHHHHHHHHHcCh--hHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHh
Confidence            899999999999988999999999999999854  6689999999999999988764  33   1111222 34555555


Q ss_pred             CCchhhcc--hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q 021317          248 TPQEKRLS--SSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQ  289 (314)
Q Consensus       248 ~~~~~~~~--~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~  289 (314)
                      ..+.....  ..+++.+...+   ..++...+.-|-..+..+..
T Consensus       279 ~~~~~v~~~~p~~~~~l~~~~---~s~d~~~~~~A~dtlg~igs  319 (503)
T PF10508_consen  279 VSPQEVLELYPAFLERLFSML---ESQDPTIREVAFDTLGQIGS  319 (503)
T ss_pred             cChHHHHHHHHHHHHHHHHHh---CCCChhHHHHHHHHHHHHhC
Confidence            43222211  23333332222   23445667788888887764

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.39  E-value=2.3e-11  Score=108.67  Aligned_cols=288  Identities=11%  Similarity=0.075  Sum_probs=215.8

Q ss_pred             eeccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCC-------CHHHHHHHHHHHHHhccC-CCChh
Q 021317           14 VFMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQ-------NGTLRELAAAAILTLSAA-APNKP   84 (314)
Q Consensus        14 v~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-------~~~~~~~a~~~L~~La~~-~~~~~   84 (314)
                      ....+|++.++-++..++|. .+..+.++|..+.+.||-..++++|+.-       +.+....+...|.|-... ++.+.
T Consensus        93 rq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~a  172 (604)
T KOG4500|consen   93 RQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRA  172 (604)
T ss_pred             HhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHH
Confidence            35567888999999999999 8889999999999999988888888532       234555667788886654 46678


Q ss_pred             HHhhcCcHHHHHHHhccC----------------------------------------------CHHHHHHHHHHHHHhc
Q 021317           85 AIAASGAAPLLVQILHSG----------------------------------------------SVQGRVDAVTALHYLS  118 (314)
Q Consensus        85 ~i~~~g~l~~Lv~lL~~~----------------------------------------------~~~~~~~a~~~L~nLs  118 (314)
                      +..+.|+++.|...+.-+                                              .+...+-+..+|...+
T Consensus       173 q~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~a  252 (604)
T KOG4500|consen  173 QVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAA  252 (604)
T ss_pred             HHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHh
Confidence            888888888665443211                                              1233445556666777


Q ss_pred             CCCCCchhhhhcCCcHHHHHHhhccC------------------------------------------------CchHHH
Q 021317          119 TCKENSSPILDATAVPPLINLLKDCK------------------------------------------------KYSKFA  150 (314)
Q Consensus       119 ~~~~~~~~i~~~g~i~~Lv~lL~~~~------------------------------------------------~~~~~~  150 (314)
                      .++..+-.+++.|.++.+.++++.-.                                                ++.+..
T Consensus       253 end~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~  332 (604)
T KOG4500|consen  253 ENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLI  332 (604)
T ss_pred             cCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHH
Confidence            77777777777777777766664310                                                011223


Q ss_pred             HHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhc-----CCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHH
Q 021317          151 EKATALLEILSSSEEGRIAITNSDGGILTLVETVED-----GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLR  225 (314)
Q Consensus       151 ~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~-----~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~  225 (314)
                      ..+.-++.|+++.++++..++ +.|.+..|+.++..     ++-..+..++.+|+|+.-..++  +..+..+|..+.++.
T Consensus       333 t~g~LaigNfaR~D~~ci~~v-~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~n--ka~~~~aGvteaIL~  409 (604)
T KOG4500|consen  333 TMGSLAIGNFARRDDICIQLV-QKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSN--KAHFAPAGVTEAILL  409 (604)
T ss_pred             HHHHHHHHhhhccchHHHHHH-HHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCc--hhhccccchHHHHHH
Confidence            344556889999999999999 79999999999853     5678899999999999976544  899999999999999


Q ss_pred             hhhcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhcCCCHHH--HHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 021317          226 LTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADK--AAETAKRLLQDMVQRSMELSMTRIQQRA  303 (314)
Q Consensus       226 ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~~~~~~--~~~~A~~~L~~l~~~s~~~~~~~~~~~~  303 (314)
                      .++..+|+++..-.++++.+..+.+.-..+.+--+.++..|..|..+.+-  ..-+..++|..+.+|+-...+..++-+.
T Consensus       410 ~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv~~tvpks  489 (604)
T KOG4500|consen  410 QLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDVILTVPKS  489 (604)
T ss_pred             HHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhhHhhcccc
Confidence            99999999999999999999887654344445555577777766655444  3577889999999998887777766554


Q ss_pred             h
Q 021317          304 A  304 (314)
Q Consensus       304 ~  304 (314)
                      +
T Consensus       490 g  490 (604)
T KOG4500|consen  490 G  490 (604)
T ss_pred             c
Confidence            4

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.35  E-value=6.2e-11  Score=107.32  Aligned_cols=212  Identities=19%  Similarity=0.180  Sum_probs=174.5

Q ss_pred             HHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHH
Q 021317           28 NLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGR  107 (314)
Q Consensus        28 a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~  107 (314)
                      |+--|.+.+++...-..+.....|..||..|+..+.++.......|..|+..++||..+.+.|.++.|+++....+++++
T Consensus       283 a~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~dL~  362 (791)
T KOG1222|consen  283 AVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHPDLR  362 (791)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCHHHH
Confidence            33334466677777778888899999999999888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcC
Q 021317          108 VDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDG  187 (314)
Q Consensus       108 ~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~  187 (314)
                      ...+..|.||+.+..++..++..|.+|.|+.++.+...    ..-|+..+.+++.+++.+..+. ...+|+.+...+-++
T Consensus       363 ~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~----~~iA~~~lYh~S~dD~~K~Mfa-yTdci~~lmk~v~~~  437 (791)
T KOG1222|consen  363 KATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK----HGIALNMLYHLSCDDDAKAMFA-YTDCIKLLMKDVLSG  437 (791)
T ss_pred             HHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc----chhhhhhhhhhccCcHHHHHHH-HHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999988543    2458899999999999998888 689999999987665


Q ss_pred             CHHHHHHHHHHH-HHhhccCcHHHHHHHHHcCChHHHHH-hhhcCCHHHHHHHHHHHHHhhcCCc
Q 021317          188 SLVSTQHAVGAL-LSLCQSCRDKYRQLILKEGAIPGLLR-LTVEGTFEAQERARTLLDLLRDTPQ  250 (314)
Q Consensus       188 ~~~~~~~A~~~L-~~L~~~~~~~~~~~i~~~g~v~~Lv~-ll~~~~~~~~~~A~~~L~~l~~~~~  250 (314)
                      ...-...++.+| .|||...+  +.+.+.+.+++..|++ .++..++..    ...++|++.|..
T Consensus       438 ~~~~vdl~lia~ciNl~lnkR--NaQlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg  496 (791)
T KOG1222|consen  438 TGSEVDLALIALCINLCLNKR--NAQLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEG  496 (791)
T ss_pred             CCceecHHHHHHHHHHHhccc--cceEEecCcchHHHHHHHhcccchHH----HHHHHHhhhccc
Confidence            433233344444 68887764  3778888889999987 455555443    357888887764

>PRK09687 putative lyase; Provisional

Probab=99.32  E-value=1.3e-10  Score=102.52  Aligned_cols=191  Identities=15%  Similarity=0.027  Sum_probs=143.4

Q ss_pred             eeccccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHH
Q 021317           14 VFMETYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAP   93 (314)
Q Consensus        14 v~~l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~   93 (314)
                      ...|.+++..++..++.+|....          ...+++.+..++.++++.+|..|+.+|+.|...+..     ....++
T Consensus        29 ~~~L~d~d~~vR~~A~~aL~~~~----------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~~~a~~   93 (280)
T PRK09687         29 FRLLDDHNSLKRISSIRVLQLRG----------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----QDNVFN   93 (280)
T ss_pred             HHHHhCCCHHHHHHHHHHHHhcC----------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----hHHHHH
Confidence            46678888888998888886332          244567788888999999999999999998653321     234678


Q ss_pred             HHHHH-hccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHh
Q 021317           94 LLVQI-LHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITN  172 (314)
Q Consensus        94 ~Lv~l-L~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~  172 (314)
                      .|..+ ++++++.++..|+.+|+++.......    ...+++.+...+.+.+  ..++..+..+|..+.           
T Consensus        94 ~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~--~~VR~~a~~aLg~~~-----------  156 (280)
T PRK09687         94 ILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKS--TNVRFAVAFALSVIN-----------  156 (280)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCC--HHHHHHHHHHHhccC-----------
Confidence            88877 67889999999999999986443211    1224455556666653  378888888885432           


Q ss_pred             ccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 021317          173 SDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLR  246 (314)
Q Consensus       173 ~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~  246 (314)
                      ...+++.|+.++.+.+..++..|+.+|..+...++          .+++.|+..+.+.++.++..|++.|..+.
T Consensus       157 ~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~----------~~~~~L~~~L~D~~~~VR~~A~~aLg~~~  220 (280)
T PRK09687        157 DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP----------DIREAFVAMLQDKNEEIRIEAIIGLALRK  220 (280)
T ss_pred             CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH----------HHHHHHHHHhcCCChHHHHHHHHHHHccC
Confidence            24478899999999999999999999999854433          26788899999999999999999998764

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.26  E-value=2.6e-10  Score=102.65  Aligned_cols=217  Identities=18%  Similarity=0.144  Sum_probs=164.1

Q ss_pred             CCHHHHHHHHHHhH-hhccCchhHHHHHh------cCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcH
Q 021317           20 FEGYARRLNLMGPL-WQLSKTRNKVKIAT------AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAA   92 (314)
Q Consensus        20 ~~~~~~~~a~~al~-l~~~~~~~~~~l~~------~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l   92 (314)
                      +++++.++.+.-+. ++..++.....+.+      .....++++++.+++.-+...|+..|..|......+..-...+.+
T Consensus        69 ~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l  148 (312)
T PF03224_consen   69 SNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEAL  148 (312)
T ss_dssp             --HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHH
Confidence            67888899988888 77777777666665      235788899999999999999999999988876555544446778


Q ss_pred             HHHHHHhcc----CCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHh-----hccCCchHHHHHHHHHHHHhcCC
Q 021317           93 PLLVQILHS----GSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLL-----KDCKKYSKFAEKATALLEILSSS  163 (314)
Q Consensus        93 ~~Lv~lL~~----~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL-----~~~~~~~~~~~~a~~~L~~L~~~  163 (314)
                      +.+++.+.+    ++.+.+..++.+|.+|...++.|..+.+.|+++.+.+++     .++....++.-.++-++|.|+-+
T Consensus       149 ~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~  228 (312)
T PF03224_consen  149 PKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFE  228 (312)
T ss_dssp             HHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcC
Confidence            888888875    345667999999999999999999999999999999999     34444557888999999999999


Q ss_pred             hhhhhHHHhccCCHHHHHHHhhcC-CHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhc--CCHHHHHH
Q 021317          164 EEGRIAITNSDGGILTLVETVEDG-SLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE--GTFEAQER  237 (314)
Q Consensus       164 ~~~~~~i~~~~g~v~~Lv~ll~~~-~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~--~~~~~~~~  237 (314)
                      ++....+. +.+.|+.|+.+++.. .+++.+.++.+|.|+....++.+...|+..|+++.+-.+...  +|+++.+-
T Consensus       229 ~~~~~~~~-~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~ed  304 (312)
T PF03224_consen  229 PEIAEELN-KKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTED  304 (312)
T ss_dssp             HHHHHHHH-TTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHH
T ss_pred             HHHHHHHh-ccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHH
Confidence            99999998 677999999999864 589999999999999987754478888888876666665543  46666653

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PRK09687 putative lyase; Provisional

Probab=99.22  E-value=7e-10  Score=97.87  Aligned_cols=208  Identities=17%  Similarity=0.004  Sum_probs=150.5

Q ss_pred             CchhHHHHHh----cCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHH
Q 021317           38 KTRNKVKIAT----AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTA  113 (314)
Q Consensus        38 ~~~~~~~l~~----~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~  113 (314)
                      ..+++....-    .-.++.|+++|.+++..++..++.+|..+          .....++.+..++.++++.+|..++++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~L~~~L~d~d~~vR~~A~~aL~~~----------~~~~~~~~l~~ll~~~d~~vR~~A~~a   77 (280)
T PRK09687          8 RKASKEYSLYSQCKKLNDDELFRLLDDHNSLKRISSIRVLQLR----------GGQDVFRLAIELCSSKNPIERDIGADI   77 (280)
T ss_pred             chhhHHHHHHHHHhhccHHHHHHHHhCCCHHHHHHHHHHHHhc----------CcchHHHHHHHHHhCCCHHHHHHHHHH
Confidence            3445544432    33478999999999999999999999887          356778899999999999999999999


Q ss_pred             HHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHH
Q 021317          114 LHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQ  193 (314)
Q Consensus       114 L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~  193 (314)
                      |..|-..+..     ...+++.|..++... ++..++..|..+|.+++......     ...+++.+...+.+.+..+|.
T Consensus        78 Lg~lg~~~~~-----~~~a~~~L~~l~~~D-~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~~~~VR~  146 (280)
T PRK09687         78 LSQLGMAKRC-----QDNVFNILNNLALED-KSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDKSTNVRF  146 (280)
T ss_pred             HHhcCCCccc-----hHHHHHHHHHHHhcC-CCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCCCHHHHH
Confidence            9998754322     234667777774442 34488889999999886543221     122456777888888999999


Q ss_pred             HHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhcCCCH
Q 021317          194 HAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGA  273 (314)
Q Consensus       194 ~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~~~~  273 (314)
                      .++.+|..+..  +          .+++.|+.++.+.++.++..|+.+|..+..+.      ..+++.|+..|.   +.+
T Consensus       147 ~a~~aLg~~~~--~----------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~------~~~~~~L~~~L~---D~~  205 (280)
T PRK09687        147 AVAFALSVIND--E----------AAIPLLINLLKDPNGDVRNWAAFALNSNKYDN------PDIREAFVAMLQ---DKN  205 (280)
T ss_pred             HHHHHHhccCC--H----------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC------HHHHHHHHHHhc---CCC
Confidence            99999977652  2          27899999999999999999999999883222      234444444442   445


Q ss_pred             HHHHHHHHHHHHHH
Q 021317          274 DKAAETAKRLLQDM  287 (314)
Q Consensus       274 ~~~~~~A~~~L~~l  287 (314)
                      +.++..|...|.++
T Consensus       206 ~~VR~~A~~aLg~~  219 (280)
T PRK09687        206 EEIRIEAIIGLALR  219 (280)
T ss_pred             hHHHHHHHHHHHcc
Confidence            66666666666543

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.21  E-value=1.1e-09  Score=98.12  Aligned_cols=267  Identities=11%  Similarity=0.053  Sum_probs=192.3

Q ss_pred             cCCHHHHHHHHHHhHhhccCchhHHHH----HhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC-CCChhHHhhcCcHH
Q 021317           19 YFEGYARRLNLMGPLWQLSKTRNKVKI----ATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA-APNKPAIAASGAAP   93 (314)
Q Consensus        19 ~~~~~~~~~a~~al~l~~~~~~~~~~l----~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~i~~~g~l~   93 (314)
                      ..+..+......++.-.+.++.-|..+    +.++.+++|.+...+++.++.++..++|+|++++ +++|..+.+.||-.
T Consensus        53 ~~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaq  132 (604)
T KOG4500|consen   53 TASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQ  132 (604)
T ss_pred             eccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCce
Confidence            334455555666666333555555444    4567788888888898999999999999999995 68999999999988


Q ss_pred             HHHHHhccC-------CHHHHHHHHHHHHHhc-CCCCCchhhhhcCCcHHHHHHhhccCCc-------------------
Q 021317           94 LLVQILHSG-------SVQGRVDAVTALHYLS-TCKENSSPILDATAVPPLINLLKDCKKY-------------------  146 (314)
Q Consensus        94 ~Lv~lL~~~-------~~~~~~~a~~~L~nLs-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~-------------------  146 (314)
                      -++++|+..       +.+....+++.|.|-. .+++.+.++.+.|+++.|...+.-+..+                   
T Consensus       133 ivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~  212 (604)
T KOG4500|consen  133 IVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVC  212 (604)
T ss_pred             ehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHH
Confidence            888877642       3467788889999988 5667888899999999877766432221                   


Q ss_pred             -------------------------hHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhc-CCH-------HHHH
Q 021317          147 -------------------------SKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVED-GSL-------VSTQ  193 (314)
Q Consensus       147 -------------------------~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~-~~~-------~~~~  193 (314)
                                               +++.+.+..+++..+.++..+-.++ ++|.+..++.+++. ...       ..-.
T Consensus       213 e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la-~~gl~e~~~~lv~~~k~~t~k~d~~~l~k  291 (604)
T KOG4500|consen  213 EMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLA-QNGLLEDSIDLVRNMKDFTKKTDMLNLFK  291 (604)
T ss_pred             HhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehh-hcchHHHHHHHHHhcccccchHHHHHHHH
Confidence                                     1233455666777777777777787 68888888888865 111       1112


Q ss_pred             HHHHHHHHhhccCcHHHHHHHHHcC-ChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCch--hhcchhhhHHHHHHHhh--
Q 021317          194 HAVGALLSLCQSCRDKYRQLILKEG-AIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE--KRLSSSVLEKIVYDIAA--  268 (314)
Q Consensus       194 ~A~~~L~~L~~~~~~~~~~~i~~~g-~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~--~~~~~~~~~~lv~~l~~--  268 (314)
                      .++....-|..++  +..+.+...+ .++.++..+++.+...+..++-++.|+++....  .+++.+++++++..|..  
T Consensus       292 ~~~el~vllltGD--eSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~  369 (604)
T KOG4500|consen  292 RIAELDVLLLTGD--ESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEK  369 (604)
T ss_pred             hhhhHhhhhhcCc--hHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhc
Confidence            2333333333333  3355566544 888899999999999999999999999976642  57788999999888774  


Q ss_pred             cCCCHHHHHHHHHHHHHHHH
Q 021317          269 RVDGADKAAETAKRLLQDMV  288 (314)
Q Consensus       269 ~~~~~~~~~~~A~~~L~~l~  288 (314)
                      ..+|+-+.+..+.++|+|++
T Consensus       370 ~vdgnV~~qhA~lsALRnl~  389 (604)
T KOG4500|consen  370 DVDGNVERQHACLSALRNLM  389 (604)
T ss_pred             CCCccchhHHHHHHHHHhcc
Confidence            24677778899999999998

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.18  E-value=3.3e-09  Score=96.38  Aligned_cols=281  Identities=14%  Similarity=0.109  Sum_probs=188.5

Q ss_pred             ccccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHH
Q 021317           16 METYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLL   95 (314)
Q Consensus        16 ~l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~L   95 (314)
                      -|.-.+.........-|.-.+...+|+..+.+.|.|+.|+.+....+++++...+..|.|++.+...+..++..|.+|.+
T Consensus       312 aLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l  391 (791)
T KOG1222|consen  312 ALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHL  391 (791)
T ss_pred             HHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHhhccchHHH
Confidence            34444544444455555566678899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHH----
Q 021317           96 VQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAIT----  171 (314)
Q Consensus        96 v~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~----  171 (314)
                      ..+|.+...  ...|...|..++-+++.+..+....+++.+++.+-++... ++-....+..-|||.+..|.+.++    
T Consensus       392 ~~ll~~d~~--~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~-~vdl~lia~ciNl~lnkRNaQlvceGqg  468 (791)
T KOG1222|consen  392 ASLLDSDTK--HGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGS-EVDLALIALCINLCLNKRNAQLVCEGQG  468 (791)
T ss_pred             HHHhCCccc--chhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCc-eecHHHHHHHHHHHhccccceEEecCcc
Confidence            999987653  4568889999999999999999999999999888765432 332222233335555444433222    


Q ss_pred             ------------------------hccC--------CHHHHHHHhhc-CCHHHHHHHHHHHHHhhccCcHHHHHHHHHcC
Q 021317          172 ------------------------NSDG--------GILTLVETVED-GSLVSTQHAVGALLSLCQSCRDKYRQLILKEG  218 (314)
Q Consensus       172 ------------------------~~~g--------~v~~Lv~ll~~-~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g  218 (314)
                                              ++.|        .|..|.+.++. .+....-.++++|+||.-.+- +....+.+.+
T Consensus       469 L~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dl-dw~~ilq~~~  547 (791)
T KOG1222|consen  469 LDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDL-DWAKILQSEN  547 (791)
T ss_pred             hHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCC-CHHHHHhhcc
Confidence                                    0111        34445555543 335567789999999987543 5566777799


Q ss_pred             ChHHHHHhhhcC--CHHHHHHHHHHHHHhhcCCchh--hcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 021317          219 AIPGLLRLTVEG--TFEAQERARTLLDLLRDTPQEK--RLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMEL  294 (314)
Q Consensus       219 ~v~~Lv~ll~~~--~~~~~~~A~~~L~~l~~~~~~~--~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~~~  294 (314)
                      .+|++-..+..+  .+..+-.-+-.+.-++......  .-.++.++.++..|.+.+.. +.--.+-.-....+.+|  |.
T Consensus       548 LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeD-DEfV~QiiyVF~Q~l~H--e~  624 (791)
T KOG1222|consen  548 LVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQED-DEFVVQIIYVFLQFLKH--EL  624 (791)
T ss_pred             ccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhccc-chHHHHHHHHHHHHHHH--HH
Confidence            999999877654  2344444444455554433322  23467888888877754432 33233333334445555  44


Q ss_pred             hHHHHHHHh
Q 021317          295 SMTRIQQRA  303 (314)
Q Consensus       295 ~~~~~~~~~  303 (314)
                      ..+..+++-
T Consensus       625 tr~~miket  633 (791)
T KOG1222|consen  625 TRRLMIKET  633 (791)
T ss_pred             HHHHHHhhc
Confidence            444444443

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.17  E-value=1.6e-09  Score=95.60  Aligned_cols=189  Identities=23%  Similarity=0.219  Sum_probs=160.8

Q ss_pred             cccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC-CCChhHHhhcCcHHHH
Q 021317           17 ETYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA-APNKPAIAASGAAPLL   95 (314)
Q Consensus        17 l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~i~~~g~l~~L   95 (314)
                      .++.+++.++.|+.-|....++-+|...++..|+..+++..+.+.+..+|+.|+++++..+.+ +..+..+.+.|+++.|
T Consensus        92 ~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L  171 (342)
T KOG2160|consen   92 SSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL  171 (342)
T ss_pred             cccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence            356678999999999996667889999999999999999999999999999999999999886 5788899999999999


Q ss_pred             HHHhccC-CHHHHHHHHHHHHHhc-CCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhc
Q 021317           96 VQILHSG-SVQGRVDAVTALHYLS-TCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNS  173 (314)
Q Consensus        96 v~lL~~~-~~~~~~~a~~~L~nLs-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~  173 (314)
                      +..|.+. +..++..|+.++.+|- ..+.....+...++...|.+.+++++...+++..++..+..|.........++..
T Consensus       172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~  251 (342)
T KOG2160|consen  172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASS  251 (342)
T ss_pred             HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence            9999876 4577899999999999 4567888888888899999999997777788899999999987765444445546


Q ss_pred             cCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcc
Q 021317          174 DGGILTLVETVEDGSLVSTQHAVGALLSLCQS  205 (314)
Q Consensus       174 ~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~  205 (314)
                      .|....+..+..+.+..+.+.++.++..+...
T Consensus       252 ~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~  283 (342)
T KOG2160|consen  252 LGFQRVLENLISSLDFEVNEAALTALLSLLSE  283 (342)
T ss_pred             hhhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence            67777777788888888999999888777654

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.09  E-value=6.8e-09  Score=93.42  Aligned_cols=228  Identities=17%  Similarity=0.132  Sum_probs=156.6

Q ss_pred             CcHHHHHHhcC--CCHHHHHHHHHHHHHhccCCCChhH-Hhh------cCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC
Q 021317           50 AIPPLVELLKF--QNGTLRELAAAAILTLSAAAPNKPA-IAA------SGAAPLLVQILHSGSVQGRVDAVTALHYLSTC  120 (314)
Q Consensus        50 ~v~~Lv~lL~~--~~~~~~~~a~~~L~~La~~~~~~~~-i~~------~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~  120 (314)
                      ....++.+|..  .++++....+..+..|..++..+.. +..      .....++++++.++|..+...|+..|..|...
T Consensus        56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~  135 (312)
T PF03224_consen   56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQ  135 (312)
T ss_dssp             ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence            36677777753  5788999999999998876654444 333      13678999999999999999999999999966


Q ss_pred             CCCchhhhhcCCcHHHHHHhhccCC--chHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHh-----hc--CCHHH
Q 021317          121 KENSSPILDATAVPPLINLLKDCKK--YSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETV-----ED--GSLVS  191 (314)
Q Consensus       121 ~~~~~~i~~~g~i~~Lv~lL~~~~~--~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll-----~~--~~~~~  191 (314)
                      .+.+..-...+.++.+++.+.+...  +..+...++.+|.+|...++.|..+. +.|+++.+..++     .+  ....+
T Consensus       136 ~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~-~~~~v~~l~~iL~~~~~~~~~~~~Ql  214 (312)
T PF03224_consen  136 GPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFW-KSNGVSPLFDILRKQATNSNSSGIQL  214 (312)
T ss_dssp             TTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHH-THHHHHHHHHHHH---------HHHH
T ss_pred             CCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHH-hcCcHHHHHHHHHhhcccCCCCchhH
Confidence            6555544446677888888876221  22456789999999999999999999 699999999999     22  23667


Q ss_pred             HHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcC-CHHHHHHHHHHHHHhhcCCch---hhcchhhhHHHHHHHh
Q 021317          192 TQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEG-TFEAQERARTLLDLLRDTPQE---KRLSSSVLEKIVYDIA  267 (314)
Q Consensus       192 ~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~-~~~~~~~A~~~L~~l~~~~~~---~~~~~~~~~~lv~~l~  267 (314)
                      +-.++.++|.|++..  +..+.+...+.++.|+++++.. ...+.+-+.+++.||......   ..+-.+.+.+++..|.
T Consensus       215 ~Y~~ll~lWlLSF~~--~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~  292 (312)
T PF03224_consen  215 QYQALLCLWLLSFEP--EIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLS  292 (312)
T ss_dssp             HHHHHHHHHHHTTSH--HHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCH--HHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHh
Confidence            899999999999885  6788899988999999988875 588899999999999877753   2222333344656666


Q ss_pred             hcCCCHHHHHHHH
Q 021317          268 ARVDGADKAAETA  280 (314)
Q Consensus       268 ~~~~~~~~~~~~A  280 (314)
                      ...=++++..+.-
T Consensus       293 ~rk~~Dedl~edl  305 (312)
T PF03224_consen  293 ERKWSDEDLTEDL  305 (312)
T ss_dssp             SS--SSHHHHHHH
T ss_pred             cCCCCCHHHHHHH
Confidence            4433345554443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.99  E-value=6.1e-08  Score=98.95  Aligned_cols=222  Identities=16%  Similarity=0.078  Sum_probs=127.5

Q ss_pred             eeccccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHH
Q 021317           14 VFMETYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAP   93 (314)
Q Consensus        14 v~~l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~   93 (314)
                      +..|.++++.+|+.|+.+|.-..          ..+.++.|+..|.+++++++..|+.+|..+....         ...+
T Consensus       627 ~~~L~D~d~~VR~~Av~~L~~~~----------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~---------~~~~  687 (897)
T PRK13800        627 APYLADPDPGVRRTAVAVLTETT----------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVL---------PPAP  687 (897)
T ss_pred             HHHhcCCCHHHHHHHHHHHhhhc----------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc---------CchH
Confidence            46678889999999998886321          2456788889998889999998888888774321         1124


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHHhcCCC-----------C--Cchh----hhhcCCcHHHHHHhhccCCchHHHHHHHHH
Q 021317           94 LLVQILHSGSVQGRVDAVTALHYLSTCK-----------E--NSSP----ILDATAVPPLINLLKDCKKYSKFAEKATAL  156 (314)
Q Consensus        94 ~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-----------~--~~~~----i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~  156 (314)
                      .|...|.++++.+|..++.+|..+...+           +  .|..    +...+..+.|..++.+.+.  .++..+..+
T Consensus       688 ~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~--~VR~~aa~a  765 (897)
T PRK13800        688 ALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENR--EVRIAVAKG  765 (897)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCH--HHHHHHHHH
Confidence            4555566666666666666555543110           0  0000    0001122334444444322  444444444


Q ss_pred             HHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHH
Q 021317          157 LEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQE  236 (314)
Q Consensus       157 L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~  236 (314)
                      |..+...         ....++.|..++++.++.+|..|+.+|..+.... .          .++.|+..+.+.++.++.
T Consensus       766 L~~~~~~---------~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~-~----------~~~~l~~aL~d~d~~VR~  825 (897)
T PRK13800        766 LATLGAG---------GAPAGDAVRALTGDPDPLVRAAALAALAELGCPP-D----------DVAAATAALRASAWQVRQ  825 (897)
T ss_pred             HHHhccc---------cchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc-h----------hHHHHHHHhcCCChHHHH
Confidence            4443221         1223567777777777788888888777765321 1          234466666667777777


Q ss_pred             HHHHHHHHhhcCCchhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 021317          237 RARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDM  287 (314)
Q Consensus       237 ~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l  287 (314)
                      .|+.+|..+..        ...++.|+..|.   |.+..++..|..+|..+
T Consensus       826 ~Aa~aL~~l~~--------~~a~~~L~~~L~---D~~~~VR~~A~~aL~~~  865 (897)
T PRK13800        826 GAARALAGAAA--------DVAVPALVEALT---DPHLDVRKAAVLALTRW  865 (897)
T ss_pred             HHHHHHHhccc--------cchHHHHHHHhc---CCCHHHHHHHHHHHhcc
Confidence            77777766532        112244444443   55566777777777665

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=3.9e-08  Score=86.92  Aligned_cols=185  Identities=18%  Similarity=0.139  Sum_probs=153.6

Q ss_pred             CHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhc-CCCCCchhhhhcCCcHHHHHHh
Q 021317           62 NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLS-TCKENSSPILDATAVPPLINLL  140 (314)
Q Consensus        62 ~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs-~~~~~~~~i~~~g~i~~Lv~lL  140 (314)
                      +.+-++.|..-|..+..+-+|..-+...||..+++..+++++..+|..|+++|...+ .++..+..+.+.|+++.|+..+
T Consensus        96 ~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~l  175 (342)
T KOG2160|consen   96 DLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKIL  175 (342)
T ss_pred             CHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHH
Confidence            567788888888888888899999999999999999999999999999999999999 5567888999999999999999


Q ss_pred             hccCCchHHHHHHHHHHHHhcCC-hhhhhHHHhccCCHHHHHHHhhc--CCHHHHHHHHHHHHHhhccCcHHHHHHHHHc
Q 021317          141 KDCKKYSKFAEKATALLEILSSS-EEGRIAITNSDGGILTLVETVED--GSLVSTQHAVGALLSLCQSCRDKYRQLILKE  217 (314)
Q Consensus       141 ~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~v~~Lv~ll~~--~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~  217 (314)
                      .+..+. .++.+|+.+++++-++ ......+. ..++...|...+.+  .+...+..++..+..|..... ..+..+...
T Consensus       176 s~~~~~-~~r~kaL~AissLIRn~~~g~~~fl-~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~-s~~d~~~~~  252 (342)
T KOG2160|consen  176 SSDDPN-TVRTKALFAISSLIRNNKPGQDEFL-KLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK-SDEDIASSL  252 (342)
T ss_pred             ccCCCc-hHHHHHHHHHHHHHhcCcHHHHHHH-hcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh-hhhhHHHHh
Confidence            975544 6778999999999887 56677777 57789999999988  568889999999999987764 334555557


Q ss_pred             CChHHHHHhhhcCCHHHHHHHHHH-HHHhhcCC
Q 021317          218 GAIPGLLRLTVEGTFEAQERARTL-LDLLRDTP  249 (314)
Q Consensus       218 g~v~~Lv~ll~~~~~~~~~~A~~~-L~~l~~~~  249 (314)
                      +....+..+....+.++.+.+... +..+....
T Consensus       253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~  285 (342)
T KOG2160|consen  253 GFQRVLENLISSLDFEVNEAALTALLSLLSELS  285 (342)
T ss_pred             hhhHHHHHHhhccchhhhHHHHHHHHHHHHHHh
Confidence            777777778888899999999964 44444443

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.96  E-value=1e-07  Score=97.40  Aligned_cols=222  Identities=16%  Similarity=0.126  Sum_probs=139.1

Q ss_pred             eeccccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC-----------CC
Q 021317           14 VFMETYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA-----------PN   82 (314)
Q Consensus        14 v~~l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-----------~~   82 (314)
                      +..|+++++.++..|+.+|.......         ...+.|...|+++++.+|..|+.+|..+...+           +.
T Consensus       658 ~~aL~D~d~~VR~~Aa~aL~~l~~~~---------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~  728 (897)
T PRK13800        658 VAALGDGAAAVRRAAAEGLRELVEVL---------PPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDH  728 (897)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHhcc---------CchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCH
Confidence            46678888999998888886221100         01234555555555555555555555442100           00


Q ss_pred             --h----hHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHH
Q 021317           83 --K----PAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATAL  156 (314)
Q Consensus        83 --~----~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~  156 (314)
                        |    ..+.+-+..+.|..++.++++.+|..++.+|..+....        ...++.|..++++.+  +.++..|+..
T Consensus       729 ~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~--------~~~~~~L~~ll~D~d--~~VR~aA~~a  798 (897)
T PRK13800        729 RVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAGG--------APAGDAVRALTGDPD--PLVRAAALAA  798 (897)
T ss_pred             HHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhcccc--------chhHHHHHHHhcCCC--HHHHHHHHHH
Confidence              0    00000112234455555666666666666665554321        124688889888864  4888888888


Q ss_pred             HHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHH
Q 021317          157 LEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQE  236 (314)
Q Consensus       157 L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~  236 (314)
                      |..+...          ...++.++..+.+.+..+|..|+.+|..+...  +          .++.|+.++.+.+..+|.
T Consensus       799 Lg~~g~~----------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~--~----------a~~~L~~~L~D~~~~VR~  856 (897)
T PRK13800        799 LAELGCP----------PDDVAAATAALRASAWQVRQGAARALAGAAAD--V----------AVPALVEALTDPHLDVRK  856 (897)
T ss_pred             HHhcCCc----------chhHHHHHHHhcCCChHHHHHHHHHHHhcccc--c----------hHHHHHHHhcCCCHHHHH
Confidence            8776431          12335688889998999999999999887532  1          569999999999999999


Q ss_pred             HHHHHHHHhhcCCchhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 021317          237 RARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQD  286 (314)
Q Consensus       237 ~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~  286 (314)
                      .|+.+|..+...       ....+.+...+.   +.+...+..|..+|..
T Consensus       857 ~A~~aL~~~~~~-------~~a~~~L~~al~---D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        857 AAVLALTRWPGD-------PAARDALTTALT---DSDADVRAYARRALAH  896 (897)
T ss_pred             HHHHHHhccCCC-------HHHHHHHHHHHh---CCCHHHHHHHHHHHhh
Confidence            999999886211       224444544443   6678889999988853

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=98.94  E-value=9.8e-08  Score=88.08  Aligned_cols=225  Identities=12%  Similarity=0.067  Sum_probs=163.7

Q ss_pred             CHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCC--CHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHH
Q 021317           21 EGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQ--NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQI   98 (314)
Q Consensus        21 ~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~l   98 (314)
                      +...+..++.++...-..++.|..+.+.++++.|+++|+..  +.+.+-.++-+++-|+.+++......+.+.++.++++
T Consensus       157 ~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i  236 (429)
T cd00256         157 NNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDI  236 (429)
T ss_pred             CcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHH
Confidence            46678888888885556789999999989999999999753  4578889999999999998877777788999999999


Q ss_pred             hccC-CHHHHHHHHHHHHHhcCCCC-------CchhhhhcCCcHHHHHHhhccCCchHHHHHH-------HHHHHHhcCC
Q 021317           99 LHSG-SVQGRVDAVTALHYLSTCKE-------NSSPILDATAVPPLINLLKDCKKYSKFAEKA-------TALLEILSSS  163 (314)
Q Consensus        99 L~~~-~~~~~~~a~~~L~nLs~~~~-------~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a-------~~~L~~L~~~  163 (314)
                      ++.. .+.+..-++.+|+||...+.       ....+++.|.++.+-.+....-.++++.+.-       -.-+..+++.
T Consensus       237 ~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsf  316 (429)
T cd00256         237 LKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSF  316 (429)
T ss_pred             HHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCH
Confidence            9875 57788999999999997431       2344556666554444444433344443211       1112233333


Q ss_pred             hh------------------------hhhHHHhcc-CCHHHHHHHhh-cCCHHHHHHHHHHHHHhhccCcHHHHHHHHHc
Q 021317          164 EE------------------------GRIAITNSD-GGILTLVETVE-DGSLVSTQHAVGALLSLCQSCRDKYRQLILKE  217 (314)
Q Consensus       164 ~~------------------------~~~~i~~~~-g~v~~Lv~ll~-~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~  217 (314)
                      ++                        |-..+-++. ..+..|+.+|. +.++.+...||.=++.++.+.| ..|..+.+-
T Consensus       317 D~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P-~gr~i~~~l  395 (429)
T cd00256         317 DEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYP-RGKDVVEQL  395 (429)
T ss_pred             HHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCc-cHHHHHHHc
Confidence            22                        233343222 22578889985 4567777889999999999876 667777778


Q ss_pred             CChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 021317          218 GAIPGLLRLTVEGTFEAQERARTLLDLLR  246 (314)
Q Consensus       218 g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~  246 (314)
                      |+=..+++++.+.+++++..|..++..+-
T Consensus       396 g~K~~vM~Lm~h~d~~Vr~eAL~avQklm  424 (429)
T cd00256         396 GGKQRVMRLLNHEDPNVRYEALLAVQKLM  424 (429)
T ss_pred             CcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            98888999999999999999999998874

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=98.92  E-value=1.2e-07  Score=87.48  Aligned_cols=270  Identities=11%  Similarity=0.042  Sum_probs=181.5

Q ss_pred             eccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCC-CHHHHHHHHHHHHHhccCCCChhHHhhcCcH
Q 021317           15 FMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQ-NGTLRELAAAAILTLSAAAPNKPAIAASGAA   92 (314)
Q Consensus        15 ~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l   92 (314)
                      .+|..+|.-++..+...+. +++.+..+.......-.++.|...|+++ +...+..++.+|..|...++.|..+.+.+++
T Consensus       108 ~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v  187 (429)
T cd00256         108 NLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGV  187 (429)
T ss_pred             HHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCH
Confidence            4677888899999999988 6554443322111111234455666654 4667778889999999999999999989999


Q ss_pred             HHHHHHhccC--CHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCCh------
Q 021317           93 PLLVQILHSG--SVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE------  164 (314)
Q Consensus        93 ~~Lv~lL~~~--~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~------  164 (314)
                      ++|+.+|+..  +...+-+++.+++-|+.+++......+.+.++.|+++++.... +++.+-+++++.|+....      
T Consensus       188 ~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~K-EKvvRv~l~~l~Nll~~~~~~~~~  266 (429)
T cd00256         188 PTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTK-EKVIRIVLAIFRNLISKRVDREVK  266 (429)
T ss_pred             HHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhh-HHHHHHHHHHHHHHhhcccccchh
Confidence            9999999764  4578899999999999998866667778999999999998654 488899999999998753      


Q ss_pred             -hhhhHHHhccCCHHHHHHHhhc---CCHHHHHH-------HHHHHHHhhccC-------------------c---HHHH
Q 021317          165 -EGRIAITNSDGGILTLVETVED---GSLVSTQH-------AVGALLSLCQSC-------------------R---DKYR  211 (314)
Q Consensus       165 -~~~~~i~~~~g~v~~Lv~ll~~---~~~~~~~~-------A~~~L~~L~~~~-------------------~---~~~~  211 (314)
                       .....++ +.|.. .++..|..   .++++.+.       --..+..++..+                   +   .++.
T Consensus       267 ~~~~~~mv-~~~l~-~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~  344 (429)
T cd00256         267 KTAALQMV-QCKVL-KTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENA  344 (429)
T ss_pred             hhHHHHHH-HcChH-HHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHH
Confidence             2234555 45554 45555543   23333221       111112222110                   0   0334


Q ss_pred             HHHHHcC--ChHHHHHhhh-cCCHHHHHHHHHHHHHhhcCC-chh-hc-chhhhHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 021317          212 QLILKEG--AIPGLLRLTV-EGTFEAQERARTLLDLLRDTP-QEK-RL-SSSVLEKIVYDIAARVDGADKAAETAKRLLQ  285 (314)
Q Consensus       212 ~~i~~~g--~v~~Lv~ll~-~~~~~~~~~A~~~L~~l~~~~-~~~-~~-~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~  285 (314)
                      ..+.+.+  .++.|++++. +.++.+..-|+-=++.+.++. .++ .+ +.|+-+.+...|.   +.+++.+.+|-.+++
T Consensus       345 ~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~---h~d~~Vr~eAL~avQ  421 (429)
T cd00256         345 DRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLN---HEDPNVRYEALLAVQ  421 (429)
T ss_pred             HHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhc---CCCHHHHHHHHHHHH
Confidence            4444433  5788889885 456777777777778877654 333 22 4666665544443   456899999999999


Q ss_pred             HHHHH
Q 021317          286 DMVQR  290 (314)
Q Consensus       286 ~l~~~  290 (314)
                      .+.-+
T Consensus       422 klm~~  426 (429)
T cd00256         422 KLMVH  426 (429)
T ss_pred             HHHHh
Confidence            88754

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.91  E-value=3.3e-08  Score=92.92  Aligned_cols=210  Identities=16%  Similarity=0.137  Sum_probs=149.1

Q ss_pred             CchhHHHHHhcCCcHHHHHHhc------CCCHHHHHHHHHHHHHhccC-----CCChhHHhhcCcHHHHHHHhccCCHHH
Q 021317           38 KTRNKVKIATAGAIPPLVELLK------FQNGTLRELAAAAILTLSAA-----APNKPAIAASGAAPLLVQILHSGSVQG  106 (314)
Q Consensus        38 ~~~~~~~l~~~g~v~~Lv~lL~------~~~~~~~~~a~~~L~~La~~-----~~~~~~i~~~g~l~~Lv~lL~~~~~~~  106 (314)
                      -+.+.....+....+.+++++.      +..+..+.-++.-...+...     -.++..+.+--....+..+....|...
T Consensus       314 ~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~  393 (678)
T KOG1293|consen  314 ASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDF  393 (678)
T ss_pred             HHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHH
Confidence            3445556667777777777773      23444444333322222221     133444443333333333334457788


Q ss_pred             HHHHHHHHHHhcCC-CCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCC-hhhhhHHHhccCCHHHHHHHh
Q 021317          107 RVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRIAITNSDGGILTLVETV  184 (314)
Q Consensus       107 ~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~v~~Lv~ll  184 (314)
                      +..|+.++.+++.+ ...+..+-+..++.+|++++.++..  .+...++++|+|+... .+.|..+. ..|+|+.+..++
T Consensus       394 ~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~--~i~~~~lgai~NlVmefs~~kskfl-~~ngId~l~s~~  470 (678)
T KOG1293|consen  394 VAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEI--MIMGITLGAICNLVMEFSNLKSKFL-RNNGIDILESML  470 (678)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcch--hHHHHHHHHHHHHHhhcccHHHHHH-HcCcHHHHHHHh
Confidence            88888888888854 3344445557799999999977644  7788899999999877 56688888 799999999999


Q ss_pred             hcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCc
Q 021317          185 EDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQ  250 (314)
Q Consensus       185 ~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~  250 (314)
                      .+.+..++..++|+|+++..+..++.+.+....=...-++.+..+.+..+|+.|..+|+||.....
T Consensus       471 ~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~  536 (678)
T KOG1293|consen  471 TDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSR  536 (678)
T ss_pred             cCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcH
Confidence            999999999999999999998865545555554456667889999999999999999999987753

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.89  E-value=1.4e-08  Score=77.35  Aligned_cols=152  Identities=14%  Similarity=0.105  Sum_probs=125.0

Q ss_pred             cCcHHHHHHHhcc-CCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhh
Q 021317           89 SGAAPLLVQILHS-GSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGR  167 (314)
Q Consensus        89 ~g~l~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~  167 (314)
                      -+.+..|+.-... .+.+.++....-|.|.+.++-|-..+.+..+++..++.|...+.  .+++.+.+.|+|+|.++.+.
T Consensus        15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne--~LvefgIgglCNlC~d~~n~   92 (173)
T KOG4646|consen   15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNE--LLVEFGIGGLCNLCLDKTNA   92 (173)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccH--HHHHHhHHHHHhhccChHHH
Confidence            3456677766654 58899999999999999999999999999999999999998654  88999999999999999999


Q ss_pred             hHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHH
Q 021317          168 IAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDL  244 (314)
Q Consensus       168 ~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~  244 (314)
                      +.|. +.+++|.++..+.+....+...|+.++..|+..+. ..|+.+....++..+.++-.+.+...+.-|...|..
T Consensus        93 ~~I~-ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~R-t~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~~  167 (173)
T KOG4646|consen   93 KFIR-EALGLPLIIFVLSSPPEITVHSAALFLQLLEFGER-TERDELLSPAVVRTVQRWRESKSHDERNLASAFLDK  167 (173)
T ss_pred             HHHH-HhcCCceEEeecCCChHHHHHHHHHHHHHhcCccc-chhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            9999 89999999999999999999999999999998876 557777776666666666544444444444444443

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=1.2e-07  Score=91.28  Aligned_cols=226  Identities=14%  Similarity=0.103  Sum_probs=173.7

Q ss_pred             cccC-CHHHHHHHHHHhH--hhccCchhHHHHHhcCCcHHHHHHhcCC-CHHHHHHHHHHHHHhcc-CCCChhHHhhcCc
Q 021317           17 ETYF-EGYARRLNLMGPL--WQLSKTRNKVKIATAGAIPPLVELLKFQ-NGTLRELAAAAILTLSA-AAPNKPAIAASGA   91 (314)
Q Consensus        17 l~~~-~~~~~~~a~~al~--l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~La~-~~~~~~~i~~~g~   91 (314)
                      |... |+..|..++..+.  +...+++.-.-+--..++|.|+.+|+++ +.++...|+++|.+|.. .+.....+++.++
T Consensus       176 L~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~a  255 (1051)
T KOG0168|consen  176 LQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHA  255 (1051)
T ss_pred             ccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccc
Confidence            4444 8999999999988  6667777776655667899999999876 79999999999999998 5788888999999


Q ss_pred             HHHHHHHhc-cCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCC--hhhhh
Q 021317           92 APLLVQILH-SGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS--EEGRI  168 (314)
Q Consensus        92 l~~Lv~lL~-~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~--~~~~~  168 (314)
                      ||.|+.-|- -.-.++-++++.+|..++..+  -..+.++|++-..+..+.--+.  .++..|+++..|+|..  .+.-.
T Consensus       256 IPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H--~~AiL~AG~l~a~LsylDFFSi--~aQR~AlaiaaN~Cksi~sd~f~  331 (1051)
T KOG0168|consen  256 IPVLLEKLLTIEYIDVAEQSLQALEKISRRH--PKAILQAGALSAVLSYLDFFSI--HAQRVALAIAANCCKSIRSDEFH  331 (1051)
T ss_pred             hHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--cHHHHhcccHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCCccch
Confidence            999887654 456788999999999999664  3578899999999998876544  5678899999999877  44555


Q ss_pred             HHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccC--cHHHHHHHHHcCChHHHHHhhhcCC----HHHHHHHHHHH
Q 021317          169 AITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSC--RDKYRQLILKEGAIPGLLRLTVEGT----FEAQERARTLL  242 (314)
Q Consensus       169 ~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~--~~~~~~~i~~~g~v~~Lv~ll~~~~----~~~~~~A~~~L  242 (314)
                      .++.   ++|.|-.+|...+.+..+.++.++.-++..-  ..+--+.+...|.+....+++.-..    ..+...-++.|
T Consensus       332 ~v~e---alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrml  408 (1051)
T KOG0168|consen  332 FVME---ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRML  408 (1051)
T ss_pred             HHHH---HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHH
Confidence            5553   8999999999988888999999998876421  1245567777888888888765432    12222333455


Q ss_pred             HHhhcCC
Q 021317          243 DLLRDTP  249 (314)
Q Consensus       243 ~~l~~~~  249 (314)
                      ..++.++
T Consensus       409 s~msS~~  415 (1051)
T KOG0168|consen  409 SLMSSGS  415 (1051)
T ss_pred             HHHccCC
Confidence            5555543

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.74  E-value=6.7e-07  Score=86.29  Aligned_cols=254  Identities=19%  Similarity=0.166  Sum_probs=162.0

Q ss_pred             cccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHH
Q 021317           17 ETYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLV   96 (314)
Q Consensus        17 l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv   96 (314)
                      +.++|+.++..|++++.... +++....     .++.+.+++.++++.+|..|+.++..+...+..  .+... .++.+.
T Consensus        88 l~~~n~~~~~lAL~~l~~i~-~~~~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~--~~~~~-~~~~l~  158 (526)
T PF01602_consen   88 LNSPNPYIRGLALRTLSNIR-TPEMAEP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD--LVEDE-LIPKLK  158 (526)
T ss_dssp             HCSSSHHHHHHHHHHHHHH--SHHHHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC--CHHGG-HHHHHH
T ss_pred             hcCCCHHHHHHHHhhhhhhc-ccchhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH--HHHHH-HHHHHh
Confidence            56778888888888887544 2333222     357788889999999999999999998764221  22222 688999


Q ss_pred             HHhccCCHHHHHHHHHHHHHh-cCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccC
Q 021317           97 QILHSGSVQGRVDAVTALHYL-STCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDG  175 (314)
Q Consensus        97 ~lL~~~~~~~~~~a~~~L~nL-s~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g  175 (314)
                      ++|.+.++.++..|+.++..+ ...+... .+. ...+..|.+++...++  -.+...+.++..++........-   ..
T Consensus       159 ~lL~d~~~~V~~~a~~~l~~i~~~~~~~~-~~~-~~~~~~L~~~l~~~~~--~~q~~il~~l~~~~~~~~~~~~~---~~  231 (526)
T PF01602_consen  159 QLLSDKDPSVVSAALSLLSEIKCNDDSYK-SLI-PKLIRILCQLLSDPDP--WLQIKILRLLRRYAPMEPEDADK---NR  231 (526)
T ss_dssp             HHTTHSSHHHHHHHHHHHHHHHCTHHHHT-THH-HHHHHHHHHHHTCCSH--HHHHHHHHHHTTSTSSSHHHHHH---HH
T ss_pred             hhccCCcchhHHHHHHHHHHHccCcchhh-hhH-HHHHHHhhhcccccch--HHHHHHHHHHHhcccCChhhhhH---HH
Confidence            999999999999999999998 1111101 111 1233444444444444  34556777777766653332210   33


Q ss_pred             CHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcc
Q 021317          176 GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLS  255 (314)
Q Consensus       176 ~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~  255 (314)
                      .++.+..++.+.++.+.-.|+.++..+....  .     .-..+++.|+.++.+.++.++..+...|..++........ 
T Consensus       232 ~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~--~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~-  303 (526)
T PF01602_consen  232 IIEPLLNLLQSSSPSVVYEAIRLIIKLSPSP--E-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF-  303 (526)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSSSH--H-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG-
T ss_pred             HHHHHHHHhhccccHHHHHHHHHHHHhhcch--H-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh-
Confidence            6668888888878888888888888877543  2     2234788899999888888999999999888776532222 


Q ss_pred             hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 021317          256 SSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELSMTRIQQ  301 (314)
Q Consensus       256 ~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~~~~~~~~~~  301 (314)
                        .....+..+.  .+.+...+..|..+|..+..   +.|...++.
T Consensus       304 --~~~~~~~~l~--~~~d~~Ir~~~l~lL~~l~~---~~n~~~Il~  342 (526)
T PF01602_consen  304 --NQSLILFFLL--YDDDPSIRKKALDLLYKLAN---ESNVKEILD  342 (526)
T ss_dssp             --THHHHHHHHH--CSSSHHHHHHHHHHHHHH-----HHHHHHHHH
T ss_pred             --hhhhhhheec--CCCChhHHHHHHHHHhhccc---ccchhhHHH
Confidence              1111111222  34456778888888888874   344444443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.73  E-value=4.9e-07  Score=85.24  Aligned_cols=254  Identities=17%  Similarity=0.214  Sum_probs=167.8

Q ss_pred             HhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHH---HhccCCC-Chh----HHhhcCcHH--HHHHHhccC
Q 021317           33 LWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAIL---TLSAAAP-NKP----AIAASGAAP--LLVQILHSG  102 (314)
Q Consensus        33 ~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~---~La~~~~-~~~----~i~~~g~l~--~Lv~lL~~~  102 (314)
                      ..++..++++..+...|+.+.+.-++...+...|..|...+.   ++..+++ ...    ...+.|..+  ...+++.++
T Consensus       165 a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~  244 (678)
T KOG1293|consen  165 AHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDP  244 (678)
T ss_pred             ccccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCC
Confidence            367777788888889999998888888778888998888888   6666543 222    223456666  456677777


Q ss_pred             CHHHHHHHHHHHHHhcCCC-------------CC---------------------------------------chhhhhc
Q 021317          103 SVQGRVDAVTALHYLSTCK-------------EN---------------------------------------SSPILDA  130 (314)
Q Consensus       103 ~~~~~~~a~~~L~nLs~~~-------------~~---------------------------------------~~~i~~~  130 (314)
                      +...+..++.+|.++....             ++                                       +....+.
T Consensus       245 ~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~  324 (678)
T KOG1293|consen  245 DFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEE  324 (678)
T ss_pred             CccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhh
Confidence            7666666666666554211             01                                       0000111


Q ss_pred             CCcHHHHHHhhccC--------------------------------------------------CchHHHHHHHHHHHHh
Q 021317          131 TAVPPLINLLKDCK--------------------------------------------------KYSKFAEKATALLEIL  160 (314)
Q Consensus       131 g~i~~Lv~lL~~~~--------------------------------------------------~~~~~~~~a~~~L~~L  160 (314)
                      ..++.+++++..+.                                                  .+...+.+|+-++.++
T Consensus       325 ~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~  404 (678)
T KOG1293|consen  325 ATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSF  404 (678)
T ss_pred             hhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHH
Confidence            12222222221100                                                  0011223333334444


Q ss_pred             cCCh-hhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHH
Q 021317          161 SSSE-EGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERAR  239 (314)
Q Consensus       161 ~~~~-~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~  239 (314)
                      +..- .-+... ....+.+.|++++.+++..+...++++++|+...-. ..+..+.+.|+|+.|..++.+.++.++..+.
T Consensus       405 srsV~aL~tg~-~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs-~~kskfl~~ngId~l~s~~~~~~~n~r~~~~  482 (678)
T KOG1293|consen  405 SRSVSALRTGL-KRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFS-NLKSKFLRNNGIDILESMLTDPDFNSRANSL  482 (678)
T ss_pred             HHHHHHHHcCC-ccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcc-cHHHHHHHcCcHHHHHHHhcCCCchHHHHHH
Confidence            4432 223332 356788899999999999999999999999987654 6799999999999999999999999999999


Q ss_pred             HHHHHhhcCCchhh---cchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Q 021317          240 TLLDLLRDTPQEKR---LSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR  290 (314)
Q Consensus       240 ~~L~~l~~~~~~~~---~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~  290 (314)
                      |+|+++.-...++.   ....+-...+..+.  .|.+..++|.+-++|+||+-.
T Consensus       483 ~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~--nd~d~~Vqeq~fqllRNl~c~  534 (678)
T KOG1293|consen  483 WVLRHLMFNCDEEEKFQLLAKIPANLILDLI--NDPDWAVQEQCFQLLRNLTCN  534 (678)
T ss_pred             HHHHHHHhcchHHHHHHHHHHhhHHHHHHHH--hCCCHHHHHHHHHHHHHhhcC
Confidence            99999987775422   22233333444444  566788999999999999943

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.70  E-value=1e-07  Score=72.64  Aligned_cols=127  Identities=20%  Similarity=0.161  Sum_probs=105.8

Q ss_pred             cHHHHHHhc-CCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhh
Q 021317           51 IPPLVELLK-FQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILD  129 (314)
Q Consensus        51 v~~Lv~lL~-~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~  129 (314)
                      +..|+.-.. ..+.+.+++...-|.|.+.++.|-..+.+..++..++..|..+++.+++.+++.|+|+|.++.|++.|++
T Consensus        18 lq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~e   97 (173)
T KOG4646|consen   18 LQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIRE   97 (173)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHHH
Confidence            445555443 4588899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCCh-hhhhHHHhccCCHHHH
Q 021317          130 ATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE-EGRIAITNSDGGILTL  180 (314)
Q Consensus       130 ~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~~g~v~~L  180 (314)
                      ++++|.++..++++..  .....++..+..|+-.. ..+..+. ..-.+..+
T Consensus        98 a~g~plii~~lssp~e--~tv~sa~~~l~~l~~~~Rt~r~ell-~p~Vv~~v  146 (173)
T KOG4646|consen   98 ALGLPLIIFVLSSPPE--ITVHSAALFLQLLEFGERTERDELL-SPAVVRTV  146 (173)
T ss_pred             hcCCceEEeecCCChH--HHHHHHHHHHHHhcCcccchhHHhc-cHHHHHHH
Confidence            9999999999988644  56677888888888764 4566665 34333333

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.66  E-value=1e-06  Score=85.09  Aligned_cols=192  Identities=21%  Similarity=0.249  Sum_probs=149.4

Q ss_pred             HHHHHHhcCC-CHHHHHHHHHHHHH-hcc-CCCChhHHhhcCcHHHHHHHhccC-CHHHHHHHHHHHHHhc-CCCCCchh
Q 021317           52 PPLVELLKFQ-NGTLRELAAAAILT-LSA-AAPNKPAIAASGAAPLLVQILHSG-SVQGRVDAVTALHYLS-TCKENSSP  126 (314)
Q Consensus        52 ~~Lv~lL~~~-~~~~~~~a~~~L~~-La~-~~~~~~~i~~~g~l~~Lv~lL~~~-~~~~~~~a~~~L~nLs-~~~~~~~~  126 (314)
                      ..|++=|+.. ++..+..|+.-|+. |+. +++.-..+--.-.+|.|+.+|+.. +.++.-.|+++|.+|+ ..|.....
T Consensus       170 kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~  249 (1051)
T KOG0168|consen  170 KKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAI  249 (1051)
T ss_pred             HHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhhe
Confidence            3444444444 67777777777776 333 344444444567899999999876 7899999999999999 67889999


Q ss_pred             hhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccC
Q 021317          127 ILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSC  206 (314)
Q Consensus       127 i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~  206 (314)
                      ++++++||.|+.-|..-. .-++.+.++.+|..+++.+  -..+. ++|++...+.+|.=-+..+|+.|+.+-.|+|..-
T Consensus       250 vV~~~aIPvl~~kL~~Ie-yiDvAEQ~LqALE~iSR~H--~~AiL-~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi  325 (1051)
T KOG0168|consen  250 VVDEHAIPVLLEKLLTIE-YIDVAEQSLQALEKISRRH--PKAIL-QAGALSAVLSYLDFFSIHAQRVALAIAANCCKSI  325 (1051)
T ss_pred             eecccchHHHHHhhhhhh-hhHHHHHHHHHHHHHHhhc--cHHHH-hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999887632 3488899999999888743  34556 6999999999997667889999999999999865


Q ss_pred             cHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCC
Q 021317          207 RDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP  249 (314)
Q Consensus       207 ~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~  249 (314)
                      +.+-=..+++  ++|.|..++...+...-+.++-++..+++.-
T Consensus       326 ~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f  366 (1051)
T KOG0168|consen  326 RSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGF  366 (1051)
T ss_pred             CCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhc
Confidence            4333445554  7999999999999999999888888887533

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.62  E-value=1.6e-06  Score=83.64  Aligned_cols=250  Identities=17%  Similarity=0.158  Sum_probs=179.6

Q ss_pred             eeccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcH
Q 021317           14 VFMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAA   92 (314)
Q Consensus        14 v~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l   92 (314)
                      +.++.+.+...++-+-.++. ....+++. ..+    ++..+.+=|.++++.++..|++++.++..     ..+. .-.+
T Consensus        48 i~l~~s~~~~~Krl~yl~l~~~~~~~~~~-~~l----~~n~l~kdl~~~n~~~~~lAL~~l~~i~~-----~~~~-~~l~  116 (526)
T PF01602_consen   48 IKLISSKDLELKRLGYLYLSLYLHEDPEL-LIL----IINSLQKDLNSPNPYIRGLALRTLSNIRT-----PEMA-EPLI  116 (526)
T ss_dssp             HCTCSSSSHHHHHHHHHHHHHHTTTSHHH-HHH----HHHHHHHHHCSSSHHHHHHHHHHHHHH-S-----HHHH-HHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHHhhcchhH-HHH----HHHHHHHhhcCCCHHHHHHHHhhhhhhcc-----cchh-hHHH
Confidence            35567889999999888888 55555552 222    34567777889999999999999999872     1222 3367


Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHh
Q 021317           93 PLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITN  172 (314)
Q Consensus        93 ~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~  172 (314)
                      +.+.+++.++++.+|..|+.++..+....+.  .+... .++.+.+++.+.+  +.+...|+.++..+...++....+. 
T Consensus       117 ~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~--~~~~~-~~~~l~~lL~d~~--~~V~~~a~~~l~~i~~~~~~~~~~~-  190 (526)
T PF01602_consen  117 PDVIKLLSDPSPYVRKKAALALLKIYRKDPD--LVEDE-LIPKLKQLLSDKD--PSVVSAALSLLSEIKCNDDSYKSLI-  190 (526)
T ss_dssp             HHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC--CHHGG-HHHHHHHHTTHSS--HHHHHHHHHHHHHHHCTHHHHTTHH-
T ss_pred             HHHHHHhcCCchHHHHHHHHHHHHHhccCHH--HHHHH-HHHHHhhhccCCc--chhHHHHHHHHHHHccCcchhhhhH-
Confidence            8899999999999999999999999854222  12222 5888999997764  4788899999988812222211333 


Q ss_pred             ccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchh
Q 021317          173 SDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEK  252 (314)
Q Consensus       173 ~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~  252 (314)
                       ...++.|.+++...++..+...+..|..++...+.. ...   ...++.+..++++.++.+.-.|+.++..+.....  
T Consensus       191 -~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~-~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~--  263 (526)
T PF01602_consen  191 -PKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPED-ADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE--  263 (526)
T ss_dssp             -HHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH--
T ss_pred             -HHHHHHhhhcccccchHHHHHHHHHHHhcccCChhh-hhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH--
Confidence             346667777778889999999999999998776432 211   4568888888888899999999999888766443  


Q ss_pred             hcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Q 021317          253 RLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRS  291 (314)
Q Consensus       253 ~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s  291 (314)
                       ....+++.++..+.   +.++..+.-|...|..+.+..
T Consensus       264 -~~~~~~~~L~~lL~---s~~~nvr~~~L~~L~~l~~~~  298 (526)
T PF01602_consen  264 -LLQKAINPLIKLLS---SSDPNVRYIALDSLSQLAQSN  298 (526)
T ss_dssp             -HHHHHHHHHHHHHT---SSSHHHHHHHHHHHHHHCCHC
T ss_pred             -HHHhhHHHHHHHhh---cccchhehhHHHHHHHhhccc
Confidence             33445555655554   445778999999999988665

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.62  E-value=2.4e-06  Score=76.88  Aligned_cols=228  Identities=11%  Similarity=0.023  Sum_probs=166.8

Q ss_pred             cCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCC--CHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHH
Q 021317           19 YFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQ--NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLV   96 (314)
Q Consensus        19 ~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv   96 (314)
                      +.+......+.++|......++.|..++..+++..++..+.+.  +-+++-+..-+++-|+.++...+.+...+.++.|.
T Consensus       168 ~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~  247 (442)
T KOG2759|consen  168 STNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLS  247 (442)
T ss_pred             cCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHH
Confidence            3566777888889995556789999999999999999999433  66788889999999999988888888889999999


Q ss_pred             HHhccC-CHHHHHHHHHHHHHhcCCCC---Cc----hhhhhcCCcHHHHHHhhccCCchHHHHHH-------HHHHHHhc
Q 021317           97 QILHSG-SVQGRVDAVTALHYLSTCKE---NS----SPILDATAVPPLINLLKDCKKYSKFAEKA-------TALLEILS  161 (314)
Q Consensus        97 ~lL~~~-~~~~~~~a~~~L~nLs~~~~---~~----~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a-------~~~L~~L~  161 (314)
                      .++++. .+.+..-++.+++|+....+   .+    ..++..++.+.+-.+.....+++++.+..       -.-...|+
T Consensus       248 ~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~Ls  327 (442)
T KOG2759|consen  248 DIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLS  327 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhc
Confidence            999876 56788899999999996653   22    34444554444444444443444443221       11123355


Q ss_pred             CChhhhhHH------------------------Hh-ccCCHHHHHHHhhcCC-HHHHHHHHHHHHHhhccCcHHHHHHHH
Q 021317          162 SSEEGRIAI------------------------TN-SDGGILTLVETVEDGS-LVSTQHAVGALLSLCQSCRDKYRQLIL  215 (314)
Q Consensus       162 ~~~~~~~~i------------------------~~-~~g~v~~Lv~ll~~~~-~~~~~~A~~~L~~L~~~~~~~~~~~i~  215 (314)
                      +.++....+                        -. +-..+..|+.+|...+ +.+...|+.=+.....+.| +++..+.
T Consensus       328 SFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP-~gk~vv~  406 (442)
T KOG2759|consen  328 SFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYP-EGKAVVE  406 (442)
T ss_pred             cHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCc-hHhHHHH
Confidence            544333332                        10 1124678888887654 7777888888899988876 7788888


Q ss_pred             HcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 021317          216 KEGAIPGLLRLTVEGTFEAQERARTLLDLLRD  247 (314)
Q Consensus       216 ~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~  247 (314)
                      +-||=+.+++++.+++|+++-+|..++..|-.
T Consensus       407 k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~  438 (442)
T KOG2759|consen  407 KYGGKERVMNLLNHEDPEVRYHALLAVQKLMV  438 (442)
T ss_pred             HhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence            89999999999999999999999999887743

>PTZ00429 beta-adaptin; Provisional

Probab=98.48  E-value=2.9e-05  Score=77.04  Aligned_cols=222  Identities=11%  Similarity=0.047  Sum_probs=143.0

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCC
Q 021317           53 PLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATA  132 (314)
Q Consensus        53 ~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~  132 (314)
                      .|.+=+.++++.+|-.|+++++++-..     .+. .-.++++.+.|.+.++-+|..|+.++.++...+.  ..+.+.|.
T Consensus       109 tl~KDl~d~Np~IRaLALRtLs~Ir~~-----~i~-e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--elv~~~~~  180 (746)
T PTZ00429        109 TFLQDTTNSSPVVRALAVRTMMCIRVS-----SVL-EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QLFYQQDF  180 (746)
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHcCCcH-----HHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--ccccccch
Confidence            344445566777777777777766321     111 1245667788889999999999999999975433  23445678


Q ss_pred             cHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHH
Q 021317          133 VPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQ  212 (314)
Q Consensus       133 i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~  212 (314)
                      ++.|.++|.+.++  .+..+|+.+|..+.......-.+  ..+.+..|+..+.+.++..+-..+..|......+.++   
T Consensus       181 ~~~L~~LL~D~dp--~Vv~nAl~aL~eI~~~~~~~l~l--~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e---  253 (746)
T PTZ00429        181 KKDLVELLNDNNP--VVASNAAAIVCEVNDYGSEKIES--SNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKES---  253 (746)
T ss_pred             HHHHHHHhcCCCc--cHHHHHHHHHHHHHHhCchhhHH--HHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHH---
Confidence            8999999987655  78899999999987654333222  2456777888887778887777777775543222111   


Q ss_pred             HHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHH
Q 021317          213 LILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSM  292 (314)
Q Consensus       213 ~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~  292 (314)
                       .  ...+..+...+++.++.+.-.|+.++..+........+ ..+...+...+.....++...+.-+-+.+..+.+..+
T Consensus       254 -~--~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~-~~~~~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P  329 (746)
T PTZ00429        254 -A--ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELI-ERCTVRVNTALLTLSRRDAETQYIVCKNIHALLVIFP  329 (746)
T ss_pred             -H--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHH-HHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHCH
Confidence             1  23567777788888999999999988888765322111 2222222222211223446677777777777766554


Q ss_pred             H
Q 021317          293 E  293 (314)
Q Consensus       293 ~  293 (314)
                      +
T Consensus       330 ~  330 (746)
T PTZ00429        330 N  330 (746)
T ss_pred             H
Confidence            3

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.48  E-value=1.5e-05  Score=69.16  Aligned_cols=269  Identities=17%  Similarity=0.153  Sum_probs=176.1

Q ss_pred             eeccccCCHHHHHHHHHHhH-hhccCchhHHHHH-hcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCc
Q 021317           14 VFMETYFEGYARRLNLMGPL-WQLSKTRNKVKIA-TAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGA   91 (314)
Q Consensus        14 v~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~-~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~   91 (314)
                      |.++.+.+|.+|+.|+.-+. ++..  ..+.... +.-.++.+.+++....+  -+.|+.+|.|++....-+..+.+. .
T Consensus         9 v~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~-~   83 (353)
T KOG2973|consen    9 VELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQD-L   83 (353)
T ss_pred             HHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHH-H
Confidence            57889999999999999888 5554  4444433 23446778888876655  667899999999998888887766 7


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhh-------cCCcHHHHHHhhccCC-chHHHHHHHHHHHHhcCC
Q 021317           92 APLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILD-------ATAVPPLINLLKDCKK-YSKFAEKATALLEILSSS  163 (314)
Q Consensus        92 l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~-------~g~i~~Lv~lL~~~~~-~~~~~~~a~~~L~~L~~~  163 (314)
                      ++.++..+.++....-...+.+|.||+..++....+..       .|.+.........+.. ... .....-++.||+..
T Consensus        84 ~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~-f~ylA~vf~nls~~  162 (353)
T KOG2973|consen   84 LKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAE-FHYLAPVFANLSQF  162 (353)
T ss_pred             HHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccc-hhHHHHHHHHHhhh
Confidence            78888888777555667777899999988765444332       3444444444444322 112 34566778899999


Q ss_pred             hhhhhHHHhccCCHH-HHHHHhhcCCHHH-HHHHHHHHHHhhccCcHHHHHHHHHc--CChHHHH---------------
Q 021317          164 EEGRIAITNSDGGIL-TLVETVEDGSLVS-TQHAVGALLSLCQSCRDKYRQLILKE--GAIPGLL---------------  224 (314)
Q Consensus       164 ~~~~~~i~~~~g~v~-~Lv~ll~~~~~~~-~~~A~~~L~~L~~~~~~~~~~~i~~~--g~v~~Lv---------------  224 (314)
                      ..+|..+. +...++ .-+.-+.+.+..+ +.-.+++|.|.|+..  .....+...  +.++.|+               
T Consensus       163 ~~gR~l~~-~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~--~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~  239 (353)
T KOG2973|consen  163 EAGRKLLL-EPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDA--KLHEVLLDESINLLPAILLPLAGPEELSEEDMA  239 (353)
T ss_pred             hhhhhHhc-chhhhhHhhhhcccccchhhhccchHHHHHhhhccc--hhHHHHhcchHHHHHHHHhhcCCccccCHHHHh
Confidence            99999987 455433 2222223333333 456788999999876  445555442  2233322               


Q ss_pred             ------Hhhh-----cCCHHHHHHHHHHHHHhhcCC--chhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Q 021317          225 ------RLTV-----EGTFEAQERARTLLDLLRDTP--QEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRS  291 (314)
Q Consensus       225 ------~ll~-----~~~~~~~~~A~~~L~~l~~~~--~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s  291 (314)
                            +++.     ..++.++..-..+|..||...  ++.+...|+.+ ++..+..+.. +++.++..-.+...+++..
T Consensus       240 ~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYp-ilRElhk~e~-ded~~~ace~vvq~Lv~~e  317 (353)
T KOG2973|consen  240 KLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYP-ILRELHKWEE-DEDIREACEQVVQMLVRLE  317 (353)
T ss_pred             cCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchH-HHHHHhcCCC-cHHHHHHHHHHHHHHHhcc
Confidence                  3333     347888888888777776433  33344455555 7788876664 4677777777777777644


Q ss_pred             HH
Q 021317          292 ME  293 (314)
Q Consensus       292 ~~  293 (314)
                      ++
T Consensus       318 ~~  319 (353)
T KOG2973|consen  318 PE  319 (353)
T ss_pred             cc
Confidence            43

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.46  E-value=4.3e-06  Score=80.45  Aligned_cols=272  Identities=17%  Similarity=0.215  Sum_probs=194.0

Q ss_pred             cCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCC--CHHHHHHHHHHHHHhccCCC-------Ch-----
Q 021317           19 YFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQ--NGTLRELAAAAILTLSAAAP-------NK-----   83 (314)
Q Consensus        19 ~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~La~~~~-------~~-----   83 (314)
                      +.-.+.|+.|+++|. ++.   .+|..++. .++++|++.|..+  ++++...++.+++++..+++       .+     
T Consensus        34 sTL~eDRR~A~rgLKa~sr---kYR~~Vga-~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~  109 (970)
T KOG0946|consen   34 STLLEDRRDAVRGLKAFSR---KYREEVGA-QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDL  109 (970)
T ss_pred             ccchhhHHHHHHHHHHHHH---HHHHHHHH-cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHH
Confidence            444778999999988 443   56666554 5689999999654  89999999999999888653       22     


Q ss_pred             -----h-HHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC--CCchhhhh-cCCcHHHHHHhhccCCchHHHHHHH
Q 021317           84 -----P-AIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCK--ENSSPILD-ATAVPPLINLLKDCKKYSKFAEKAT  154 (314)
Q Consensus        84 -----~-~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~--~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~~~a~  154 (314)
                           . .|...+.|..++..++..|-.+|..++..|.+|-..-  +.+..+.. +-+|..|+++|.+...  .++..++
T Consensus       110 g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE--~IRNe~i  187 (970)
T KOG0946|consen  110 GLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSRE--PIRNEAI  187 (970)
T ss_pred             HHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhh--hhchhHH
Confidence                 1 1224689999999999999999999999999997543  44555554 7899999999998644  7888889


Q ss_pred             HHHHHhcCChhhhhHHHhccCCHHHHHHHhhcC----CHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhc-
Q 021317          155 ALLEILSSSEEGRIAITNSDGGILTLVETVEDG----SLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE-  229 (314)
Q Consensus       155 ~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~----~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~-  229 (314)
                      -.|..|+.+..+.+.++.=..+...|+.++...    ..-+.+.|+..|.||-..+. .++..+.+.+.+|.|.+++.. 
T Consensus       188 LlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~-SNQ~~FrE~~~i~rL~klL~~f  266 (970)
T KOG0946|consen  188 LLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNI-SNQNFFREGSYIPRLLKLLSVF  266 (970)
T ss_pred             HHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCc-chhhHHhccccHHHHHhhcCcc
Confidence            999999999888777765678999999999652    24578999999999998875 679999999999999977653 


Q ss_pred             --CCH--------HHH--HHHHHHHHHhhcCCch--------hh-cchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 021317          230 --GTF--------EAQ--ERARTLLDLLRDTPQE--------KR-LSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMV  288 (314)
Q Consensus       230 --~~~--------~~~--~~A~~~L~~l~~~~~~--------~~-~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~  288 (314)
                        ++.        +++  ..+..+++.+..-...        ++ ...+.+..+...+. +.+-..+....+.-.+.+++
T Consensus       267 ~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~-~~~vp~dIltesiitvAevV  345 (970)
T KOG0946|consen  267 EFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILM-HPGVPADILTESIITVAEVV  345 (970)
T ss_pred             cccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHc-CCCCcHhHHHHHHHHHHHHH
Confidence              221        222  2333455555432211        22 23444554433333 34345677888888888888


Q ss_pred             HHHHHHhHHHH
Q 021317          289 QRSMELSMTRI  299 (314)
Q Consensus       289 ~~s~~~~~~~~  299 (314)
                      . +-+.|.-.+
T Consensus       346 R-gn~~nQ~~F  355 (970)
T KOG0946|consen  346 R-GNARNQDEF  355 (970)
T ss_pred             H-hchHHHHHH
Confidence            4 444554444

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.39  E-value=6.2e-06  Score=82.46  Aligned_cols=227  Identities=15%  Similarity=0.084  Sum_probs=146.1

Q ss_pred             eccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC-CCChhHHhhcCcH
Q 021317           15 FMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA-APNKPAIAASGAA   92 (314)
Q Consensus        15 ~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~i~~~g~l   92 (314)
                      .|+.|+++..|..++.+|. ...+..+.-... -..+++.+++.|.+++|.+|..|+.+++.++.+ ...-..-..+-.+
T Consensus       355 ~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~-l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~  433 (1075)
T KOG2171|consen  355 AMLQSTEWKERHAALLALSVIAEGCSDVMIGN-LPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLP  433 (1075)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHcccHHHHHHH-HHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhcc
Confidence            6899999999999999999 554444322221 135678888899999999999999999999986 3333333456677


Q ss_pred             HHHHHHhccC-CHHHHHHHHHHHHHhcCCCCCchhhhh--cCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhH
Q 021317           93 PLLVQILHSG-SVQGRVDAVTALHYLSTCKENSSPILD--ATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIA  169 (314)
Q Consensus        93 ~~Lv~lL~~~-~~~~~~~a~~~L~nLs~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~  169 (314)
                      |.|+..+.+. +++++..|+.+|.|++..-. +..+..  .+.+.+++..|.... .+.+++.+.++|...+.....+-.
T Consensus       434 ~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~-~~~l~pYLd~lm~~~l~~L~~~~-~~~v~e~vvtaIasvA~AA~~~F~  511 (1075)
T KOG2171|consen  434 PALIALLDSTQNVRVQAHAAAALVNFSEECD-KSILEPYLDGLMEKKLLLLLQSS-KPYVQEQAVTAIASVADAAQEKFI  511 (1075)
T ss_pred             HHHHHHhcccCchHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHHHhhhhH
Confidence            8899999876 78999999999999985421 122222  356664444554432 338899999999887765333211


Q ss_pred             HHhccCCHHHHHHHhhcCC-HH---HHHHHHHHHHHhhccCcHHHHHHHHH--cCChHHHHHh---hhcCCHHHHHHHHH
Q 021317          170 ITNSDGGILTLVETVEDGS-LV---STQHAVGALLSLCQSCRDKYRQLILK--EGAIPGLLRL---TVEGTFEAQERART  240 (314)
Q Consensus       170 i~~~~g~v~~Lv~ll~~~~-~~---~~~~A~~~L~~L~~~~~~~~~~~i~~--~g~v~~Lv~l---l~~~~~~~~~~A~~  240 (314)
                      =. -.-.+|.|...|.+.+ .+   +|-....++.-++..   -+++.+..  .-.++.+..+   ..+.+...+++...
T Consensus       512 pY-~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~A---VGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~  587 (1075)
T KOG2171|consen  512 PY-FDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARA---VGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIA  587 (1075)
T ss_pred             hH-HHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHH---hhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHH
Confidence            11 1236677778887654 33   444444454444432   33555554  2345555555   33345666676666


Q ss_pred             HHHHhhcC
Q 021317          241 LLDLLRDT  248 (314)
Q Consensus       241 ~L~~l~~~  248 (314)
                      ...++|+.
T Consensus       588 ~warmc~i  595 (1075)
T KOG2171|consen  588 FWARMCRI  595 (1075)
T ss_pred             HHHHHHHH
Confidence            66677653

>PTZ00429 beta-adaptin; Provisional

Probab=98.35  E-value=0.00014  Score=72.20  Aligned_cols=214  Identities=13%  Similarity=0.076  Sum_probs=138.8

Q ss_pred             ccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHH
Q 021317           18 TYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQ   97 (314)
Q Consensus        18 ~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~   97 (314)
                      .++|+.+|-.|++.+..... ++.    .+ -.++++.+.+.+.++-+|..|+.++.++-..+.  ..+.+.|.++.|.+
T Consensus       115 ~d~Np~IRaLALRtLs~Ir~-~~i----~e-~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--elv~~~~~~~~L~~  186 (746)
T PTZ00429        115 TNSSPVVRALAVRTMMCIRV-SSV----LE-YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QLFYQQDFKKDLVE  186 (746)
T ss_pred             CCCCHHHHHHHHHHHHcCCc-HHH----HH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--ccccccchHHHHHH
Confidence            44555566555555542211 111    11 224556778888999999999999999865433  34456789999999


Q ss_pred             HhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCH
Q 021317           98 ILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGI  177 (314)
Q Consensus        98 lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v  177 (314)
                      +|.+.++.+..+|+.+|..+.......- -...+.+..|+..+.+.++|.++  ..+.+|....  ++......   ..+
T Consensus       187 LL~D~dp~Vv~nAl~aL~eI~~~~~~~l-~l~~~~~~~Ll~~L~e~~EW~Qi--~IL~lL~~y~--P~~~~e~~---~il  258 (746)
T PTZ00429        187 LLNDNNPVVASNAAAIVCEVNDYGSEKI-ESSNEWVNRLVYHLPECNEWGQL--YILELLAAQR--PSDKESAE---TLL  258 (746)
T ss_pred             HhcCCCccHHHHHHHHHHHHHHhCchhh-HHHHHHHHHHHHHhhcCChHHHH--HHHHHHHhcC--CCCcHHHH---HHH
Confidence            9999999999999999999985443321 12345677788888777776554  4555553321  22222222   366


Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCC
Q 021317          178 LTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP  249 (314)
Q Consensus       178 ~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~  249 (314)
                      ..+...|++.++.+.-.|+.++.++....+.+..+.+.. ...++|+.+. ++++++|--+...+..+....
T Consensus       259 ~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~~~  328 (746)
T PTZ00429        259 TRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTLS-RRDAETQYIVCKNIHALLVIF  328 (746)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHhh-CCCccHHHHHHHHHHHHHHHC
Confidence            778888888899999999999999986532222222221 1235566663 567888888887776665543

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.34  E-value=7.4e-07  Score=54.59  Aligned_cols=40  Identities=45%  Similarity=0.566  Sum_probs=38.1

Q ss_pred             CchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 021317           38 KTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLS   77 (314)
Q Consensus        38 ~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La   77 (314)
                      +++++..+++.|++|+|+++|.++++++++.|+++|+||+
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            4789999999999999999999999999999999999997

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF05536 Neurochondrin: Neurochondrin

Probab=98.31  E-value=0.00014  Score=70.08  Aligned_cols=231  Identities=17%  Similarity=0.152  Sum_probs=156.2

Q ss_pred             cHHHHHHhcCCCHHHHHHHHHHHHHhccCCC----ChhHHhhcCcHHHHHHHhcc-------CCHHHHHHHHHHHHHhcC
Q 021317           51 IPPLVELLKFQNGTLRELAAAAILTLSAAAP----NKPAIAASGAAPLLVQILHS-------GSVQGRVDAVTALHYLST  119 (314)
Q Consensus        51 v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~----~~~~i~~~g~l~~Lv~lL~~-------~~~~~~~~a~~~L~nLs~  119 (314)
                      ++.-+.+|++.+.+-+..++..+.++...++    .++.|.++=|.+.+-++|++       +....+.-|+.+|..++.
T Consensus         7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~   86 (543)
T PF05536_consen    7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR   86 (543)
T ss_pred             HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence            4556788888887777788888888877543    24567888788999999988       345778899999999999


Q ss_pred             CCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHH
Q 021317          120 CKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGAL  199 (314)
Q Consensus       120 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L  199 (314)
                      .++....=--.+-||.|++++..+.+ ..+...|..+|..++..++++..++ +.|+|+.|.+.+.+ .+...+.|+.+|
T Consensus        87 ~~~~a~~~~~~~~IP~Lle~l~~~s~-~~~v~dalqcL~~Ias~~~G~~aLl-~~g~v~~L~ei~~~-~~~~~E~Al~lL  163 (543)
T PF05536_consen   87 DPELASSPQMVSRIPLLLEILSSSSD-LETVDDALQCLLAIASSPEGAKALL-ESGAVPALCEIIPN-QSFQMEIALNLL  163 (543)
T ss_pred             ChhhhcCHHHHHHHHHHHHHHHcCCc-hhHHHHHHHHHHHHHcCcHhHHHHH-hcCCHHHHHHHHHh-CcchHHHHHHHH
Confidence            77655432224579999999988654 3677889999999999999999999 79999999999987 455679999999


Q ss_pred             HHhhccCcHHHHHHHHH-----cCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCc---h-hhcchh----hhHHHHHHH
Q 021317          200 LSLCQSCRDKYRQLILK-----EGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQ---E-KRLSSS----VLEKIVYDI  266 (314)
Q Consensus       200 ~~L~~~~~~~~~~~i~~-----~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~---~-~~~~~~----~~~~lv~~l  266 (314)
                      .+++....   .+.+-+     ...++.|-..+.......+-..+..|..+-...+   . ......    +..++-..+
T Consensus       164 ~~Lls~~~---~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL  240 (543)
T PF05536_consen  164 LNLLSRLG---QKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL  240 (543)
T ss_pred             HHHHHhcc---hhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence            99886542   111111     1234445554544455556666666666644332   1 111122    222332223


Q ss_pred             hhcCCCHHHHHHHHHHHHHHHHH
Q 021317          267 AARVDGADKAAETAKRLLQDMVQ  289 (314)
Q Consensus       267 ~~~~~~~~~~~~~A~~~L~~l~~  289 (314)
                      ....  ++..+..|..+...|.+
T Consensus       241 ~sr~--~~~~R~~al~Laa~Ll~  261 (543)
T PF05536_consen  241 QSRL--TPSQRDPALNLAASLLD  261 (543)
T ss_pred             hcCC--CHHHHHHHHHHHHHHHH
Confidence            3222  35666666666665554

>PF05536 Neurochondrin: Neurochondrin

Probab=98.29  E-value=3.4e-05  Score=74.35  Aligned_cols=230  Identities=17%  Similarity=0.088  Sum_probs=151.2

Q ss_pred             eeccccCCHHHHHHHHHHhH-hhccCch---hHHHHHhcCCcHHHHHHhcCC-------CHHHHHHHHHHHHHhccCCCC
Q 021317           14 VFMETYFEGYARRLNLMGPL-WQLSKTR---NKVKIATAGAIPPLVELLKFQ-------NGTLRELAAAAILTLSAAAPN   82 (314)
Q Consensus        14 v~~l~~~~~~~~~~a~~al~-l~~~~~~---~~~~l~~~g~v~~Lv~lL~~~-------~~~~~~~a~~~L~~La~~~~~   82 (314)
                      +.+|++.+++.|..++.-+. +...++.   +++.+.++=+.+.+-++|+++       ....+.-|+.+|..++..++.
T Consensus        11 ~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~~~~   90 (543)
T PF05536_consen   11 LSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRDPEL   90 (543)
T ss_pred             HHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCChhh
Confidence            35788888777777776666 6665553   344577776678888899762       356778899999999987654


Q ss_pred             hhHHhhcCcHHHHHHHhccCCH-HHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhc
Q 021317           83 KPAIAASGAAPLLVQILHSGSV-QGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILS  161 (314)
Q Consensus        83 ~~~i~~~g~l~~Lv~lL~~~~~-~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~  161 (314)
                      ...-.--+-||.|++.+.+.+. +....|+.+|..++..++++..+++.|+++.|++.+.++.   ...+.++.++.++.
T Consensus        91 a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~~---~~~E~Al~lL~~Ll  167 (543)
T PF05536_consen   91 ASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQS---FQMEIALNLLLNLL  167 (543)
T ss_pred             hcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhCc---chHHHHHHHHHHHH
Confidence            3332223679999999988877 9999999999999999999999999999999999998842   45678888888887


Q ss_pred             CChhhhhHHHhcc----CCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHH----HHHhhhcC-CH
Q 021317          162 SSEEGRIAITNSD----GGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPG----LLRLTVEG-TF  232 (314)
Q Consensus       162 ~~~~~~~~i~~~~----g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~----Lv~ll~~~-~~  232 (314)
                      ...... ..-...    ..++.+-..+.......+-..+..|.++-...+....+........+.    |..++++. .+
T Consensus       168 s~~~~~-~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~  246 (543)
T PF05536_consen  168 SRLGQK-SWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTP  246 (543)
T ss_pred             Hhcchh-hhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCH
Confidence            654321 111111    234445555544444555667777777654432000111122233333    33345554 45


Q ss_pred             HHHHHHHHHHHHhhc
Q 021317          233 EAQERARTLLDLLRD  247 (314)
Q Consensus       233 ~~~~~A~~~L~~l~~  247 (314)
                      ..|..|..+...|.+
T Consensus       247 ~~R~~al~Laa~Ll~  261 (543)
T PF05536_consen  247 SQRDPALNLAASLLD  261 (543)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            556666666655544

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.28  E-value=8.8e-05  Score=71.70  Aligned_cols=212  Identities=18%  Similarity=0.162  Sum_probs=161.2

Q ss_pred             CcHHHHHHhcCC-CHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccC--CHHHHHHHHHHHHHhcCCCC----
Q 021317           50 AIPPLVELLKFQ-NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSG--SVQGRVDAVTALHYLSTCKE----  122 (314)
Q Consensus        50 ~v~~Lv~lL~~~-~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~--~~~~~~~a~~~L~nLs~~~~----  122 (314)
                      .|+.|++-+.+. =.+-|..|++.|..++.  ..|.. +..-|.+++++.|..+  |++....++.++.++..+++    
T Consensus        23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr--kYR~~-Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v   99 (970)
T KOG0946|consen   23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR--KYREE-VGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEV   99 (970)
T ss_pred             HHHHHHHHHhhccchhhHHHHHHHHHHHHH--HHHHH-HHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhh
Confidence            377888887644 46778899999998875  22333 3466899999999875  89999999999999986653    


Q ss_pred             --Cch-----------hhh-hcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCC--hhhhhHHHhccCCHHHHHHHhhc
Q 021317          123 --NSS-----------PIL-DATAVPPLINLLKDCKKYSKFAEKATALLEILSSS--EEGRIAITNSDGGILTLVETVED  186 (314)
Q Consensus       123 --~~~-----------~i~-~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~~g~v~~Lv~ll~~  186 (314)
                        +-.           .+. ..+-|..|+..+...+-  .++..+...+.++-.+  .+.+..+....-+|..++.+|.+
T Consensus       100 ~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF--~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D  177 (970)
T KOG0946|consen  100 MDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDF--HVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD  177 (970)
T ss_pred             cccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhch--hhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence              221           222 36788899999988643  7888999999988655  56677777678999999999999


Q ss_pred             CCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcC----CHHHHHHHHHHHHHhhcCC--chh-hcchhhh
Q 021317          187 GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEG----TFEAQERARTLLDLLRDTP--QEK-RLSSSVL  259 (314)
Q Consensus       187 ~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~----~~~~~~~A~~~L~~l~~~~--~~~-~~~~~~~  259 (314)
                      ....+|..++-.|..|+.+++ ..++.+.=++++..|..+++..    ..-+.+-|..+|.||-+.+  ++. ..+-+.+
T Consensus       178 srE~IRNe~iLlL~eL~k~n~-~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i  256 (970)
T KOG0946|consen  178 SREPIRNEAILLLSELVKDNS-SIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYI  256 (970)
T ss_pred             hhhhhchhHHHHHHHHHccCc-hHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccH
Confidence            889999999999999999986 4555555599999999998763    2356788899999988655  233 3445677


Q ss_pred             HHHHHHHh
Q 021317          260 EKIVYDIA  267 (314)
Q Consensus       260 ~~lv~~l~  267 (314)
                      +.+...|.
T Consensus       257 ~rL~klL~  264 (970)
T KOG0946|consen  257 PRLLKLLS  264 (970)
T ss_pred             HHHHhhcC
Confidence            77765544

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.28  E-value=1.4e-05  Score=73.09  Aligned_cols=163  Identities=18%  Similarity=0.192  Sum_probs=132.3

Q ss_pred             hhHHhhcCcHHHHHHHhccCCHHH--HHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHh
Q 021317           83 KPAIAASGAAPLLVQILHSGSVQG--RVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEIL  160 (314)
Q Consensus        83 ~~~i~~~g~l~~Lv~lL~~~~~~~--~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L  160 (314)
                      +..|...|++..|++++..++.+.  +..|...|..+... +|++++++.| +..++.+-+... ..+.....+++|.|+
T Consensus       173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a-eN~d~va~~~-~~~Il~lAK~~e-~~e~aR~~~~il~~m  249 (832)
T KOG3678|consen  173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA-ENRDRVARIG-LGVILNLAKERE-PVELARSVAGILEHM  249 (832)
T ss_pred             hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh-hhhhHHhhcc-chhhhhhhhhcC-cHHHHHHHHHHHHHH
Confidence            455667899999999999987654  88888888776544 6899999876 555555555533 346778889999999


Q ss_pred             cCC-hhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHH
Q 021317          161 SSS-EEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERAR  239 (314)
Q Consensus       161 ~~~-~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~  239 (314)
                      -.+ ++....++ ..|+++.++-..+..++.+...|+-+|.|++.+...+.+..|++..+.++|.-+..+.++-.+-+|+
T Consensus       250 FKHSeet~~~Lv-aa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC  328 (832)
T KOG3678|consen  250 FKHSEETCQRLV-AAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC  328 (832)
T ss_pred             hhhhHHHHHHHH-hhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence            877 55677788 7999999998888888999999999999998876668899999999999999988888888899999


Q ss_pred             HHHHHhhcCC
Q 021317          240 TLLDLLRDTP  249 (314)
Q Consensus       240 ~~L~~l~~~~  249 (314)
                      .++.-++..-
T Consensus       329 lAV~vlat~K  338 (832)
T KOG3678|consen  329 LAVAVLATNK  338 (832)
T ss_pred             HHHhhhhhhh
Confidence            8888887544

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.25  E-value=2.6e-06  Score=52.08  Aligned_cols=39  Identities=33%  Similarity=0.368  Sum_probs=37.0

Q ss_pred             HHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 021317          209 KYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRD  247 (314)
Q Consensus       209 ~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~  247 (314)
                      ++++.+++.|+++.|++++++.++.+++.|+|+|+||+.
T Consensus         3 ~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    3 ENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            679999999999999999999999999999999999974

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.23  E-value=6.7e-05  Score=67.80  Aligned_cols=268  Identities=12%  Similarity=0.055  Sum_probs=177.7

Q ss_pred             eeccccCCHHHHHHHHHHhH-hhccCchhH---HHHHhcCCcHHHHHHhcC-CCHHHHHHHHHHHHHhccCCCChhHHhh
Q 021317           14 VFMETYFEGYARRLNLMGPL-WQLSKTRNK---VKIATAGAIPPLVELLKF-QNGTLRELAAAAILTLSAAAPNKPAIAA   88 (314)
Q Consensus        14 v~~l~~~~~~~~~~a~~al~-l~~~~~~~~---~~l~~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~La~~~~~~~~i~~   88 (314)
                      +.++...|.-++..+.+.+. ++.-+..+-   ..-...   ..|-..+.+ .+.+....++++|..+...++.|-.++.
T Consensus       120 l~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~~---~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~  196 (442)
T KOG2759|consen  120 LNLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDVYK---GFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVI  196 (442)
T ss_pred             HHHHhcCChHHHHHHHHHHHHHHHhccccccchHHHHHH---HHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeee
Confidence            35667778888887777766 443322211   111111   233444544 5677778889999999999999999999


Q ss_pred             cCcHHHHHHHhccC--CHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCCh--
Q 021317           89 SGAAPLLVQILHSG--SVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE--  164 (314)
Q Consensus        89 ~g~l~~Lv~lL~~~--~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~--  164 (314)
                      ..|+..++..+.++  +-.++-..+.+++-|+.++...+.+..-+.|+.|.+++++... +++..-+++++.|+....  
T Consensus       197 adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~K-EKV~Rivlai~~Nll~k~~~  275 (442)
T KOG2759|consen  197 ADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTK-EKVTRIVLAIFRNLLDKGPD  275 (442)
T ss_pred             cCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccCch
Confidence            99999999999533  5678899999999999999888888778999999999998654 388889999999998765  


Q ss_pred             -----hhhhHHHhccCCHHHHHHHhhc---CCHHHHH-------HHHHHHHHhhccC--------------c--------
Q 021317          165 -----EGRIAITNSDGGILTLVETVED---GSLVSTQ-------HAVGALLSLCQSC--------------R--------  207 (314)
Q Consensus       165 -----~~~~~i~~~~g~v~~Lv~ll~~---~~~~~~~-------~A~~~L~~L~~~~--------------~--------  207 (314)
                           +....++  .+.++..++.|..   .++++..       .--.-...||..+              |        
T Consensus       276 ~~~~k~~~~~mv--~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW  353 (442)
T KOG2759|consen  276 RETKKDIASQMV--LCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFW  353 (442)
T ss_pred             hhHHHHHHHHHH--hcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchH
Confidence                 3345555  3455666666643   2333221       1111122233221              0        


Q ss_pred             HHHHHHHHHc--CChHHHHHhhhcCC-HHHHHHHHHHHHHhhc-CCchh--hcchhhhHHHHHHHhhcCCCHHHHHHHHH
Q 021317          208 DKYRQLILKE--GAIPGLLRLTVEGT-FEAQERARTLLDLLRD-TPQEK--RLSSSVLEKIVYDIAARVDGADKAAETAK  281 (314)
Q Consensus       208 ~~~~~~i~~~--g~v~~Lv~ll~~~~-~~~~~~A~~~L~~l~~-~~~~~--~~~~~~~~~lv~~l~~~~~~~~~~~~~A~  281 (314)
                      .++...+-+.  ..++.|+.+++.++ |.+---|+-=+...-+ +|+++  +.+.|+-+.+...|.   ..+++++.+|.
T Consensus       354 ~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Lln---h~d~~Vry~AL  430 (442)
T KOG2759|consen  354 RENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLN---HEDPEVRYHAL  430 (442)
T ss_pred             HHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhc---CCCchHHHHHH
Confidence            0223333332  36888999888765 6666666665666554 44443  345788886654443   44589999999


Q ss_pred             HHHHHHHHH
Q 021317          282 RLLQDMVQR  290 (314)
Q Consensus       282 ~~L~~l~~~  290 (314)
                      .++..+.-+
T Consensus       431 lavQ~lm~~  439 (442)
T KOG2759|consen  431 LAVQKLMVH  439 (442)
T ss_pred             HHHHHHHhh
Confidence            998887754

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.21  E-value=0.00014  Score=73.12  Aligned_cols=237  Identities=19%  Similarity=0.178  Sum_probs=152.8

Q ss_pred             CHHHHHHHHHHhH-hhccCchhHHHHHh--cCCcHHHHHHhcCC--C--------------HHHHHHHHHHHHHhccCCC
Q 021317           21 EGYARRLNLMGPL-WQLSKTRNKVKIAT--AGAIPPLVELLKFQ--N--------------GTLRELAAAAILTLSAAAP   81 (314)
Q Consensus        21 ~~~~~~~a~~al~-l~~~~~~~~~~l~~--~g~v~~Lv~lL~~~--~--------------~~~~~~a~~~L~~La~~~~   81 (314)
                      ++.+|..|+..|. ++..-+...+....  .-.++.++.++...  +              .+....|.++|-.+|.+-.
T Consensus       262 ~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~  341 (1075)
T KOG2171|consen  262 ENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLG  341 (1075)
T ss_pred             cHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCC
Confidence            5778888888877 55443333232222  12245555555321  1              1133456667777766533


Q ss_pred             ChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhh--cCCcHHHHHHhhccCCchHHHHHHHHHHHH
Q 021317           82 NKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILD--ATAVPPLINLLKDCKKYSKFAEKATALLEI  159 (314)
Q Consensus        82 ~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~  159 (314)
                      .+...  .=..+.+-.+|.+.+..-|..++.+|..++...  .+.+..  ..+++.++..|+++++  .++..|+.++..
T Consensus       342 g~~v~--p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc--~~~m~~~l~~Il~~Vl~~l~Dphp--rVr~AA~naigQ  415 (1075)
T KOG2171|consen  342 GKQVL--PPLFEALEAMLQSTEWKERHAALLALSVIAEGC--SDVMIGNLPKILPIVLNGLNDPHP--RVRYAALNAIGQ  415 (1075)
T ss_pred             hhheh--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHHHhhcCCCCH--HHHHHHHHHHHh
Confidence            22221  123455556678899999999999988887432  122222  3577888888888655  899999999999


Q ss_pred             hcCCh-hhhhHHHhccCCHHHHHHHhhc-CCHHHHHHHHHHHHHhhccCcHHHHHHHHH--cCChHHHH-HhhhcCCHHH
Q 021317          160 LSSSE-EGRIAITNSDGGILTLVETVED-GSLVSTQHAVGALLSLCQSCRDKYRQLILK--EGAIPGLL-RLTVEGTFEA  234 (314)
Q Consensus       160 L~~~~-~~~~~i~~~~g~v~~Lv~ll~~-~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~--~g~v~~Lv-~ll~~~~~~~  234 (314)
                      ++.+- +.-..-. +.-.++.|+..+.+ +++.++..|+.+|.|++...+   ...+.-  .+.+++++ .+..++.+.+
T Consensus       416 ~stdl~p~iqk~~-~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~---~~~l~pYLd~lm~~~l~~L~~~~~~~v  491 (1075)
T KOG2171|consen  416 MSTDLQPEIQKKH-HERLPPALIALLDSTQNVRVQAHAAAALVNFSEECD---KSILEPYLDGLMEKKLLLLLQSSKPYV  491 (1075)
T ss_pred             hhhhhcHHHHHHH-HHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHhcCCchhH
Confidence            99983 3333333 35577788888876 568999999999999998765   333433  45666444 4666788999


Q ss_pred             HHHHHHHHHHhhcCCchhhcc--hhhhHHHHHHHh
Q 021317          235 QERARTLLDLLRDTPQEKRLS--SSVLEKIVYDIA  267 (314)
Q Consensus       235 ~~~A~~~L~~l~~~~~~~~~~--~~~~~~lv~~l~  267 (314)
                      |+.++.++...+...+.+...  ...++-+...|.
T Consensus       492 ~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~  526 (1075)
T KOG2171|consen  492 QEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQ  526 (1075)
T ss_pred             HHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHh
Confidence            999999999999877765554  234554544454

>TIGR02270 conserved hypothetical protein

Probab=98.18  E-value=0.00026  Score=65.77  Aligned_cols=191  Identities=18%  Similarity=0.049  Sum_probs=124.5

Q ss_pred             cHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhc
Q 021317           51 IPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDA  130 (314)
Q Consensus        51 v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~  130 (314)
                      ++.|+..|.+.++.++..++.+|..+          ...+..+.|+.+|.+.++.++..++.++..-           ..
T Consensus        88 ~~~L~~~L~d~~~~vr~aaa~ALg~i----------~~~~a~~~L~~~L~~~~p~vR~aal~al~~r-----------~~  146 (410)
T TIGR02270        88 LRSVLAVLQAGPEGLCAGIQAALGWL----------GGRQAEPWLEPLLAASEPPGRAIGLAALGAH-----------RH  146 (410)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHhcC----------CchHHHHHHHHHhcCCChHHHHHHHHHHHhh-----------cc
Confidence            67777788777777777777777654          5567778888888888888888777776651           12


Q ss_pred             CCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHH
Q 021317          131 TAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKY  210 (314)
Q Consensus       131 g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~  210 (314)
                      ...+.+..+|++.+.  .++..|..+|..+..           ...++.|...+.+.++.++..|+++|..+...   +.
T Consensus       147 ~~~~~L~~~L~d~d~--~Vra~A~raLG~l~~-----------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~~---~A  210 (410)
T TIGR02270       147 DPGPALEAALTHEDA--LVRAAALRALGELPR-----------RLSESTLRLYLRDSDPEVRFAALEAGLLAGSR---LA  210 (410)
T ss_pred             ChHHHHHHHhcCCCH--HHHHHHHHHHHhhcc-----------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCCH---hH
Confidence            346788888876544  777888888876542           45777788888999999999999998776431   11


Q ss_pred             HHHHH----Hc------------------CChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhh
Q 021317          211 RQLIL----KE------------------GAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAA  268 (314)
Q Consensus       211 ~~~i~----~~------------------g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~  268 (314)
                      ...+.    +.                  ..++.|..++++  +.++..++.+|..+..        ...++.++..+. 
T Consensus       211 ~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~d--~~vr~~a~~AlG~lg~--------p~av~~L~~~l~-  279 (410)
T TIGR02270       211 WGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQA--AATRREALRAVGLVGD--------VEAAPWCLEAMR-  279 (410)
T ss_pred             HHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHHHhcC--hhhHHHHHHHHHHcCC--------cchHHHHHHHhc-
Confidence            11111    11                  133344444443  3366666666665433        335555544443 


Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHH
Q 021317          269 RVDGADKAAETAKRLLQDMVQRSME  293 (314)
Q Consensus       269 ~~~~~~~~~~~A~~~L~~l~~~s~~  293 (314)
                          ++..++.|...++.++.--++
T Consensus       280 ----d~~~aR~A~eA~~~ItG~~l~  300 (410)
T TIGR02270       280 ----EPPWARLAGEAFSLITGMDVA  300 (410)
T ss_pred             ----CcHHHHHHHHHHHHhhCCCcc
Confidence                245888899999888854333

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.18  E-value=4.9e-05  Score=66.09  Aligned_cols=189  Identities=22%  Similarity=0.187  Sum_probs=133.4

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHh-hcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhc
Q 021317           52 PPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIA-ASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDA  130 (314)
Q Consensus        52 ~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~-~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~  130 (314)
                      -.++.+|.+.+|.++..|+.-+.+++.. ..+.... +...++.+.+++....+  -..|+.+|.|++.++..++.+.+.
T Consensus         6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~   82 (353)
T KOG2973|consen    6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQD   82 (353)
T ss_pred             HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHH
Confidence            3578899999999999999999998877 3333332 44578888999888776  678899999999999999888887


Q ss_pred             CCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHh-cc----CCHHHHHHHhhcCC---HHHHHHHHHHHHHh
Q 021317          131 TAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITN-SD----GGILTLVETVEDGS---LVSTQHAVGALLSL  202 (314)
Q Consensus       131 g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~~----g~v~~Lv~ll~~~~---~~~~~~A~~~L~~L  202 (314)
                       .+..++..+-+...  ...+..+-+|.||+..++....+.. -.    .++..++....+.+   ..--..-+.++.||
T Consensus        83 -~~k~l~~~~~~p~~--~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nl  159 (353)
T KOG2973|consen   83 -LLKVLMDMLTDPQS--PLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANL  159 (353)
T ss_pred             -HHHHHHHHhcCccc--chHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHH
Confidence             77777777766422  5566788889999999877655531 11    34445555443322   12236778889999


Q ss_pred             hccCcHHHHHHHHHcCC--hHHHHHhhhcCCHHHHHHHH-HHHHHhhcCC
Q 021317          203 CQSCRDKYRQLILKEGA--IPGLLRLTVEGTFEAQERAR-TLLDLLRDTP  249 (314)
Q Consensus       203 ~~~~~~~~~~~i~~~g~--v~~Lv~ll~~~~~~~~~~A~-~~L~~l~~~~  249 (314)
                      +...  ..|..+.+...  .+.|+.+-. .+..+|+..+ ++|.|+|-..
T Consensus       160 s~~~--~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~  206 (353)
T KOG2973|consen  160 SQFE--AGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDA  206 (353)
T ss_pred             hhhh--hhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccc
Confidence            9886  56888877553  334555554 5666666554 7999988654

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.16  E-value=9.9e-06  Score=58.31  Aligned_cols=86  Identities=34%  Similarity=0.435  Sum_probs=70.3

Q ss_pred             cHHHHHHh-cCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhh
Q 021317           51 IPPLVELL-KFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILD  129 (314)
Q Consensus        51 v~~Lv~lL-~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~  129 (314)
                      ||.|++.| .++++.++..++.+|+.+          .....++.|+++++++++.++..|+.+|..+-          +
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~----------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~   60 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGEL----------GDPEAIPALIELLKDEDPMVRRAAARALGRIG----------D   60 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCC----------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence            58899999 788999999999999955          34467999999999999999999999999872          4


Q ss_pred             cCCcHHHHHHhhccCCchHHHHHHHHHH
Q 021317          130 ATAVPPLINLLKDCKKYSKFAEKATALL  157 (314)
Q Consensus       130 ~g~i~~Lv~lL~~~~~~~~~~~~a~~~L  157 (314)
                      ..+++.|.+++.+++. ..++..|..+|
T Consensus        61 ~~~~~~L~~~l~~~~~-~~vr~~a~~aL   87 (88)
T PF13646_consen   61 PEAIPALIKLLQDDDD-EVVREAAAEAL   87 (88)
T ss_dssp             HHTHHHHHHHHTC-SS-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCc-HHHHHHHHhhc
Confidence            5699999999988643 35567777665

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.13  E-value=0.00039  Score=69.37  Aligned_cols=212  Identities=19%  Similarity=0.155  Sum_probs=147.2

Q ss_pred             ccccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHH
Q 021317           16 METYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLL   95 (314)
Q Consensus        16 ~l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~L   95 (314)
                      +-..+++++|+-|+..+..+..+.+.-..+++.|++..|+.+|-+ -|..++.++.+|..|+.+.+--..-.+.|++..+
T Consensus      1780 lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yi 1858 (2235)
T KOG1789|consen 1780 LRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYI 1858 (2235)
T ss_pred             HHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhh
Confidence            334467899999999999777778888889999999999999954 5888999999999999987766666677887777


Q ss_pred             HHHh-ccCCHHHHHHHHHHHHHhcCCC-----------------------------------------------------
Q 021317           96 VQIL-HSGSVQGRVDAVTALHYLSTCK-----------------------------------------------------  121 (314)
Q Consensus        96 v~lL-~~~~~~~~~~a~~~L~nLs~~~-----------------------------------------------------  121 (314)
                      ...+ .+.++..+..++..+..|..++                                                     
T Consensus      1859 l~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS 1938 (2235)
T KOG1789|consen 1859 LSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVS 1938 (2235)
T ss_pred             hHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHH
Confidence            7654 4567788888888888776300                                                     


Q ss_pred             -------------------------------------------CCchhhhhcC------------CcHHHHHHhhccCCc
Q 021317          122 -------------------------------------------ENSSPILDAT------------AVPPLINLLKDCKKY  146 (314)
Q Consensus       122 -------------------------------------------~~~~~i~~~g------------~i~~Lv~lL~~~~~~  146 (314)
                                                                 -+|..+.+.+            .++.++++|...+++
T Consensus      1939 ~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~pe 2018 (2235)
T KOG1789|consen 1939 GIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPE 2018 (2235)
T ss_pred             HHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcc
Confidence                                                       0111111111            112222222221111


Q ss_pred             h------------------------------------------HHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHh
Q 021317          147 S------------------------------------------KFAEKATALLEILSSSEEGRIAITNSDGGILTLVETV  184 (314)
Q Consensus       147 ~------------------------------------------~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll  184 (314)
                      +                                          .+-..|+++|+.|+.+.-..+.|. ...++..++..|
T Consensus      2019 qh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~AMA-~l~~i~~~m~~m 2097 (2235)
T KOG1789|consen 2019 QHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCDAMA-QLPCIDGIMKSM 2097 (2235)
T ss_pred             cchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHHHHh-ccccchhhHHHH
Confidence            0                                          112457788999999888888888 677888888888


Q ss_pred             hcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcC
Q 021317          185 EDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEG  230 (314)
Q Consensus       185 ~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~  230 (314)
                      +.... ..-.|+.+|--+...+.++......+.|.++.|++++...
T Consensus      2098 kK~~~-~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2098 KKQPS-LMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred             Hhcch-HHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence            76433 3347778887776665567777778899999999998754

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.12  E-value=0.00019  Score=69.16  Aligned_cols=264  Identities=13%  Similarity=0.135  Sum_probs=171.9

Q ss_pred             CCHHHHHHHHHHhHhhccCch-h-HHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC--CCChhHHhhcCcHHHH
Q 021317           20 FEGYARRLNLMGPLWQLSKTR-N-KVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA--APNKPAIAASGAAPLL   95 (314)
Q Consensus        20 ~~~~~~~~a~~al~l~~~~~~-~-~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~--~~~~~~i~~~g~l~~L   95 (314)
                      ++..+|..|+.||.++-+... | -...-.+-..+..++.-.+++.+++..|..+|..+..-  ..-...+ ....+..-
T Consensus       186 ~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM-~~alfait  264 (859)
T KOG1241|consen  186 TSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYM-EQALFAIT  264 (859)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            356788899999884432211 1 11111223345566666788999999999999997652  1112222 23345556


Q ss_pred             HHHhccCCHHHHHHHHHHHHHhcCC----------------CCCchhhhh---cCCcHHHHHHhhc------cCCchHHH
Q 021317           96 VQILHSGSVQGRVDAVTALHYLSTC----------------KENSSPILD---ATAVPPLINLLKD------CKKYSKFA  150 (314)
Q Consensus        96 v~lL~~~~~~~~~~a~~~L~nLs~~----------------~~~~~~i~~---~g~i~~Lv~lL~~------~~~~~~~~  150 (314)
                      +..++++++++...++..=.+++.-                ++....+.+   .+.+|.|+++|..      +++| ...
T Consensus       265 l~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdW-np~  343 (859)
T KOG1241|consen  265 LAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDW-NPA  343 (859)
T ss_pred             HHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccC-cHH
Confidence            6778899999999998877777641                111122222   3678888888854      2223 344


Q ss_pred             HHHHHHHHHhcCChhhhhHHHhccCCHHHHHHH----hhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHh
Q 021317          151 EKATALLEILSSSEEGRIAITNSDGGILTLVET----VEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRL  226 (314)
Q Consensus       151 ~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~l----l~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~l  226 (314)
                      ..|..+|.-++..       + ...++++.+.+    +++++-.-++.|+.++..+-.+.. ..+..-.-.+++|.++.+
T Consensus       344 kAAg~CL~l~A~~-------~-~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~-~~~Lt~iV~qalp~ii~l  414 (859)
T KOG1241|consen  344 KAAGVCLMLFAQC-------V-GDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPE-PDKLTPIVIQALPSIINL  414 (859)
T ss_pred             HHHHHHHHHHHHH-------h-cccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCc-hhhhhHHHhhhhHHHHHH
Confidence            5565666544432       1 23344444444    455666778889999988876643 334444446789999999


Q ss_pred             hhcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 021317          227 TVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMEL  294 (314)
Q Consensus       227 l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~~~  294 (314)
                      +.+.+-.+++.++|++..++++..+...-..-....+..+..+....++....+.+++-.|+++..|.
T Consensus       415 m~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA  482 (859)
T KOG1241|consen  415 MSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEA  482 (859)
T ss_pred             hcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHh
Confidence            99888999999999999999988764444444445555566555556899999999999999775553

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.10  E-value=0.00025  Score=68.41  Aligned_cols=272  Identities=13%  Similarity=0.091  Sum_probs=169.6

Q ss_pred             eeeccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC------------
Q 021317           13 EVFMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA------------   79 (314)
Q Consensus        13 ~v~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~------------   79 (314)
                      .++..+++|.++|.+|..+|. +.+-..+.-..-........-+.-++++++++..++...=.+++..            
T Consensus       222 vcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~  301 (859)
T KOG1241|consen  222 VCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAV  301 (859)
T ss_pred             eeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            357778999999999999988 5554444433333434445556677888999998888877766642            


Q ss_pred             CCChh----HHh---hcCcHHHHHHHhccC-------CHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhcc--
Q 021317           80 APNKP----AIA---ASGAAPLLVQILHSG-------SVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDC--  143 (314)
Q Consensus        80 ~~~~~----~i~---~~g~l~~Lv~lL~~~-------~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~--  143 (314)
                      +.+..    .+.   -.+.+|-|+++|...       +-.....|..+|.-++..       ++..++++++..++..  
T Consensus       302 d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~-------~~D~Iv~~Vl~Fiee~i~  374 (859)
T KOG1241|consen  302 DQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC-------VGDDIVPHVLPFIEENIQ  374 (859)
T ss_pred             hcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH-------hcccchhhhHHHHHHhcC
Confidence            11111    111   136888899988652       123445555566555533       1223555666666532  


Q ss_pred             CCchHHHHHHHHHHHHhcCCh-hhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHH
Q 021317          144 KKYSKFAEKATALLEILSSSE-EGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPG  222 (314)
Q Consensus       144 ~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~  222 (314)
                      +++.+-++.+.=++..+-..+ ..+..-. -.+++|.++.++.+.+-.++..+.|+|..++...++..-....-.+.++.
T Consensus       375 ~pdwr~reaavmAFGSIl~gp~~~~Lt~i-V~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~  453 (859)
T KOG1241|consen  375 NPDWRNREAAVMAFGSILEGPEPDKLTPI-VIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSA  453 (859)
T ss_pred             CcchhhhhHHHHHHHhhhcCCchhhhhHH-HhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHH
Confidence            223355666666665555443 3333323 37899999999998888889999999999998765321112222344555


Q ss_pred             HHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcc-------hhhhHHHHHHHhhcC---CCH-HHHHHHHHHHHHHHHHHH
Q 021317          223 LLRLTVEGTFEAQERARTLLDLLRDTPQEKRLS-------SSVLEKIVYDIAARV---DGA-DKAAETAKRLLQDMVQRS  291 (314)
Q Consensus       223 Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~-------~~~~~~lv~~l~~~~---~~~-~~~~~~A~~~L~~l~~~s  291 (314)
                      +++-+. +.|++-.+++|++-+|+++..+....       ..+.+.++..|..-.   +|+ ...+..|=++|..+++.+
T Consensus       454 l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~s  532 (859)
T KOG1241|consen  454 LLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNS  532 (859)
T ss_pred             HHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcC
Confidence            555443 56999999999999999665432222       235566766666322   222 245788888999998877


Q ss_pred             HH
Q 021317          292 ME  293 (314)
Q Consensus       292 ~~  293 (314)
                      +.
T Consensus       533 t~  534 (859)
T KOG1241|consen  533 TD  534 (859)
T ss_pred             cH
Confidence            54

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.02  E-value=0.00013  Score=62.52  Aligned_cols=187  Identities=19%  Similarity=0.211  Sum_probs=114.8

Q ss_pred             ccCCHHHHHHHHHHHHHhcCCC---CCchhhhh--cCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhh-HHHhc
Q 021317          100 HSGSVQGRVDAVTALHYLSTCK---ENSSPILD--ATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRI-AITNS  173 (314)
Q Consensus       100 ~~~~~~~~~~a~~~L~nLs~~~---~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~-~i~~~  173 (314)
                      .+.+-+.+..++.-|..+....   +....+.+  ...+..+...+.+...  .+...|+.++..++..-...- ..+  
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs--~v~~~A~~~l~~l~~~l~~~~~~~~--   92 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRS--KVSKTACQLLSDLARQLGSHFEPYA--   92 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH-----HHHHHHHHHHHHHHHHGGGGHHHH--
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHH--HHHHHHHHHHHHHHHHHhHhHHHHH--
Confidence            4567888999999999998443   34444444  2566777777776543  788889999888887643332 222  


Q ss_pred             cCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCc--h
Q 021317          174 DGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQ--E  251 (314)
Q Consensus       174 ~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~--~  251 (314)
                      ...+|.|+..+.++..-+++.|..+|..++...+  .-..+    .++.+.....+.++.++..++..+..+....+  .
T Consensus        93 ~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~  166 (228)
T PF12348_consen   93 DILLPPLLKKLGDSKKFIREAANNALDAIIESCS--YSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDS  166 (228)
T ss_dssp             HHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS---H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----
T ss_pred             HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC--cHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchH
Confidence            3478899999999888999999999999998763  01111    14556667888999999999988887765444  2


Q ss_pred             hhcc-hhhhHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHHHHHHhH
Q 021317          252 KRLS-SSVLEKIVYDIAAR-VDGADKAAETAKRLLQDMVQRSMELSM  296 (314)
Q Consensus       252 ~~~~-~~~~~~lv~~l~~~-~~~~~~~~~~A~~~L~~l~~~s~~~~~  296 (314)
                      ..+. .+.++.++..+... .|+++++++.|+.++..+-++-+++..
T Consensus       167 ~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~  213 (228)
T PF12348_consen  167 SVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAE  213 (228)
T ss_dssp             GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-
T ss_pred             hhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhc
Confidence            2333 23233344433321 588899999999999999988777653

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.02  E-value=0.00016  Score=68.90  Aligned_cols=259  Identities=14%  Similarity=0.095  Sum_probs=166.3

Q ss_pred             ccccCCHHHHHHHHHHhH-hhccCchhHHHHHh-cCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHH
Q 021317           16 METYFEGYARRLNLMGPL-WQLSKTRNKVKIAT-AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAP   93 (314)
Q Consensus        16 ~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~-~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~   93 (314)
                      ..+.+++.+|..|+.++- ..-..  ++..+.. --.++.+..+-.++++++|.+.+.+|..|-.....|-.--=.++++
T Consensus       182 f~~h~spkiRs~A~~cvNq~i~~~--~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~Ive  259 (885)
T KOG2023|consen  182 FFKHPSPKIRSHAVGCVNQFIIIQ--TQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVE  259 (885)
T ss_pred             HHhCCChhHHHHHHhhhhheeecC--cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHH
Confidence            346678999999999887 33322  2233332 2345666666677899999999999999876533222222246788


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhh--cCCcHHHHHHhhccCCch------------------------
Q 021317           94 LLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILD--ATAVPPLINLLKDCKKYS------------------------  147 (314)
Q Consensus        94 ~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~------------------------  147 (314)
                      .++..-.+.++++-..|+.....++..+..+..+..  ...+|.|+.-+...+.+.                        
T Consensus       260 yML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfh  339 (885)
T KOG2023|consen  260 YMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFH  339 (885)
T ss_pred             HHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhh
Confidence            888888899999999999999999988855554444  467777776443211100                        


Q ss_pred             ------------------------------HHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHh----hcCCHHHHH
Q 021317          148 ------------------------------KFAEKATALLEILSSSEEGRIAITNSDGGILTLVETV----EDGSLVSTQ  193 (314)
Q Consensus       148 ------------------------------~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll----~~~~~~~~~  193 (314)
                                                    .++....++|--|+.       +. ....++.++.+|    .+..=.++|
T Consensus       340 ksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLan-------vf-~~elL~~l~PlLk~~L~~~~W~vrE  411 (885)
T KOG2023|consen  340 KSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLAN-------VF-GDELLPILLPLLKEHLSSEEWKVRE  411 (885)
T ss_pred             hchhccCccccccccccccccccccccccccHhhccHHHHHHHHH-------hh-HHHHHHHHHHHHHHHcCcchhhhhh
Confidence                                          111111111211111       11 123444455444    445567889


Q ss_pred             HHHHHHHHhhccCcHHHHHHHHH--cCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCch--h-hcchhhhHHHHHHHhh
Q 021317          194 HAVGALLSLCQSCRDKYRQLILK--EGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE--K-RLSSSVLEKIVYDIAA  268 (314)
Q Consensus       194 ~A~~~L~~L~~~~~~~~~~~i~~--~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~--~-~~~~~~~~~lv~~l~~  268 (314)
                      .+.-+|..++.+.    .+-+..  .-.+|.|++++.+..+-+|.-.+|+|...++.--+  . ..-..++++++..+. 
T Consensus       412 agvLAlGAIAEGc----M~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~ll-  486 (885)
T KOG2023|consen  412 AGVLALGAIAEGC----MQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLL-  486 (885)
T ss_pred             hhHHHHHHHHHHH----hhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHh-
Confidence            9999999999654    333333  22677888889999999999999999998764421  1 111235555555554 


Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHH
Q 021317          269 RVDGADKAAETAKRLLQDMVQRS  291 (314)
Q Consensus       269 ~~~~~~~~~~~A~~~L~~l~~~s  291 (314)
                        |++.+++|.|..+..-+-...
T Consensus       487 --D~NK~VQEAAcsAfAtleE~A  507 (885)
T KOG2023|consen  487 --DSNKKVQEAACSAFATLEEEA  507 (885)
T ss_pred             --cccHHHHHHHHHHHHHHHHhc
Confidence              888999999999988776544

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.02  E-value=0.0043  Score=56.71  Aligned_cols=255  Identities=17%  Similarity=0.135  Sum_probs=171.0

Q ss_pred             HhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC------CCCh----hHHhhcCcHHHHHHHhc
Q 021317           31 GPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA------APNK----PAIAASGAAPLLVQILH  100 (314)
Q Consensus        31 al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~------~~~~----~~i~~~g~l~~Lv~lL~  100 (314)
                      -+...++-|+-.-.+++.++|+.|+++|.+++.++....+..|..|+-.      .+..    ..+++.++++.|++-++
T Consensus       107 ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnve  186 (536)
T KOG2734|consen  107 EMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVE  186 (536)
T ss_pred             HHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHH
Confidence            3445556677777889999999999999999999999999999999863      2222    34457789999998876


Q ss_pred             cCCHH------HHHHHHHHHHHhc-CCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCCh-hhhhHHHh
Q 021317          101 SGSVQ------GRVDAVTALHYLS-TCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE-EGRIAITN  172 (314)
Q Consensus       101 ~~~~~------~~~~a~~~L~nLs-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~  172 (314)
                      .=++.      ...+++..+-|+. ..++.+..+++.|.+.-|+.-+............|..++.-+-.+. +++.... 
T Consensus       187 RLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~-  265 (536)
T KOG2734|consen  187 RLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLG-  265 (536)
T ss_pred             HhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhc-
Confidence            64443      3466777888888 5667888888888888877755543233345678888888777664 4777776 


Q ss_pred             ccCCHHHHHHHhh---cCC------HHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHH
Q 021317          173 SDGGILTLVETVE---DGS------LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLD  243 (314)
Q Consensus       173 ~~g~v~~Lv~ll~---~~~------~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~  243 (314)
                      ...+|..+++-+.   ..+      ...-++-..+|+.+-...  ++++.+....+++-..-+++. ....+..|..+|.
T Consensus       266 ~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~--~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd  342 (536)
T KOG2734|consen  266 PLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAP--ANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLD  342 (536)
T ss_pred             CcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcCh--hhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHH
Confidence            6889998888772   222      344566677777766554  669999987777755555554 4555667778887


Q ss_pred             HhhcCCch-----hhcchhhhHHHHHHHhhcC------CCH-HHHHHHHHHHHHHHHH
Q 021317          244 LLRDTPQE-----KRLSSSVLEKIVYDIAARV------DGA-DKAAETAKRLLQDMVQ  289 (314)
Q Consensus       244 ~l~~~~~~-----~~~~~~~~~~lv~~l~~~~------~~~-~~~~~~A~~~L~~l~~  289 (314)
                      ....++..     +.++..++..+.+.-....      ..+ +..-+...++|..+-.
T Consensus       343 ~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~  400 (536)
T KOG2734|consen  343 HAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR  400 (536)
T ss_pred             HHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence            77665542     4455555555554433111      111 2334556666555544

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.93  E-value=0.0004  Score=55.31  Aligned_cols=133  Identities=14%  Similarity=0.154  Sum_probs=106.5

Q ss_pred             hHHhhcCcHHHHHHHhccCC------HHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHH
Q 021317           84 PAIAASGAAPLLVQILHSGS------VQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALL  157 (314)
Q Consensus        84 ~~i~~~g~l~~Lv~lL~~~~------~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L  157 (314)
                      ..+...||++.|+++++++.      .+....++.++..|-..............+..++........+..+.+.++++|
T Consensus         5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL   84 (160)
T PF11841_consen    5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL   84 (160)
T ss_pred             HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence            34567899999999999876      377788999999999887777788888899999999987655668889999999


Q ss_pred             HHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHH
Q 021317          158 EILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK  216 (314)
Q Consensus       158 ~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~  216 (314)
                      -++..+.+..-..+.+.=-++.|+.+|+..++.++.+|...+-.|-...+++-|+.+.+
T Consensus        85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i~~  143 (160)
T PF11841_consen   85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEIAE  143 (160)
T ss_pred             HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence            99998877644444355678999999999999999999999888766555444554443

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.93  E-value=0.00021  Score=66.86  Aligned_cols=224  Identities=18%  Similarity=0.115  Sum_probs=156.8

Q ss_pred             eeeccccCCHHHHHHHHHHhH-hhc---cCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhh
Q 021317           13 EVFMETYFEGYARRLNLMGPL-WQL---SKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAA   88 (314)
Q Consensus        13 ~v~~l~~~~~~~~~~a~~al~-l~~---~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~   88 (314)
                      +..||+.+++++|..+-.++. +..   .++..   +--...++.++.-+.++++.++..|...+.....-....-...-
T Consensus       213 Lf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~  289 (675)
T KOG0212|consen  213 LFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYL  289 (675)
T ss_pred             HHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhh
Confidence            457889999999977776655 222   22221   12245678899999999999999998888887665555555556


Q ss_pred             cCcHHHHHHHhccCCHH-HHHHHH---HHHHHhcCCCCCchhhhhc-CCcHHHHHHhhccCCchHHHHHHHHHHHHhcCC
Q 021317           89 SGAAPLLVQILHSGSVQ-GRVDAV---TALHYLSTCKENSSPILDA-TAVPPLINLLKDCKKYSKFAEKATALLEILSSS  163 (314)
Q Consensus        89 ~g~l~~Lv~lL~~~~~~-~~~~a~---~~L~nLs~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~  163 (314)
                      +|.+..++.++.+..+. .++.+.   ..|..+...+..+.. ++. ..++.|.+.+.+...  +.+..++..+..|-..
T Consensus       290 s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~--~tri~~L~Wi~~l~~~  366 (675)
T KOG0212|consen  290 SGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDRE--ETRIAVLNWIILLYHK  366 (675)
T ss_pred             hhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchH--HHHHHHHHHHHHHHhh
Confidence            78888888888776553 333332   235555555544444 443 466777777777544  5566788888888877


Q ss_pred             hhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHH
Q 021317          164 EEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLD  243 (314)
Q Consensus       164 ~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~  243 (314)
                      ..++-... .....+.|+.-|.+.++.+...++..++++|.+...  . -.  ...+..|+++.+.+..-....+.-+++
T Consensus       367 ~p~ql~~h-~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~--~-~~--~~fl~sLL~~f~e~~~~l~~Rg~lIIR  440 (675)
T KOG0212|consen  367 APGQLLVH-NDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNS--P-NL--RKFLLSLLEMFKEDTKLLEVRGNLIIR  440 (675)
T ss_pred             Ccchhhhh-ccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCccc--c-cH--HHHHHHHHHHHhhhhHHHHhhhhHHHH
Confidence            77776666 578899999999999999999999999999987642  2 11  124556666666666666777888888


Q ss_pred             HhhcC
Q 021317          244 LLRDT  248 (314)
Q Consensus       244 ~l~~~  248 (314)
                      .+|.-
T Consensus       441 qlC~l  445 (675)
T KOG0212|consen  441 QLCLL  445 (675)
T ss_pred             HHHHH
Confidence            88753

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=97.92  E-value=0.00014  Score=66.65  Aligned_cols=169  Identities=14%  Similarity=0.120  Sum_probs=127.3

Q ss_pred             HHHHhcCCcHHHHHHhcCCCHH--HHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhcc-CCHHHHHHHHHHHHHhc-
Q 021317           43 VKIATAGAIPPLVELLKFQNGT--LRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHS-GSVQGRVDAVTALHYLS-  118 (314)
Q Consensus        43 ~~l~~~g~v~~Lv~lL~~~~~~--~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~-~~~~~~~~a~~~L~nLs-  118 (314)
                      ..+...|++..|+.++.+++-+  ++..+...|-.+. ..+|+..++..| +..++.+-+. ..++.....++.|.++- 
T Consensus       174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~-~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFK  251 (832)
T KOG3678|consen  174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQIL-VAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFK  251 (832)
T ss_pred             hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHH-hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhh
Confidence            4456678999999999988654  5888888776653 357788888776 5555555443 45678888899999999 


Q ss_pred             CCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCC--hhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHH
Q 021317          119 TCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS--EEGRIAITNSDGGILTLVETVEDGSLVSTQHAV  196 (314)
Q Consensus       119 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~  196 (314)
                      .+++.+..++..|++..++-..+..++  .+...|.-+|.|++.+  ...++.|+ +..+-+=|..+-.+.++-++-.|+
T Consensus       252 HSeet~~~Lvaa~~lD~vl~~~rRt~P--~lLRH~ALAL~N~~L~~~~a~qrrmv-eKr~~EWLF~LA~skDel~R~~AC  328 (832)
T KOG3678|consen  252 HSEETCQRLVAAGGLDAVLYWCRRTDP--ALLRHCALALGNCALHGGQAVQRRMV-EKRAAEWLFPLAFSKDELLRLHAC  328 (832)
T ss_pred             hhHHHHHHHHhhcccchheeecccCCH--HHHHHHHHHhhhhhhhchhHHHHHHH-HhhhhhhhhhhhcchHHHHHHHHH
Confidence            566789999999999999888877644  7788888889887655  67888888 566767777776677778889999


Q ss_pred             HHHHHhhccCcHHHHHHHHHcC
Q 021317          197 GALLSLCQSCRDKYRQLILKEG  218 (314)
Q Consensus       197 ~~L~~L~~~~~~~~~~~i~~~g  218 (314)
                      -+.+-|+...  +.-..+.+.|
T Consensus       329 lAV~vlat~K--E~E~~VrkS~  348 (832)
T KOG3678|consen  329 LAVAVLATNK--EVEREVRKSG  348 (832)
T ss_pred             HHHhhhhhhh--hhhHHHhhcc
Confidence            9999988664  4334444444

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=97.88  E-value=0.0016  Score=59.78  Aligned_cols=222  Identities=16%  Similarity=0.039  Sum_probs=155.7

Q ss_pred             ccccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCC--CHHHHHHHHHHHHHhccCCCChhHHhhcCcHH
Q 021317           16 METYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQ--NGTLRELAAAAILTLSAAAPNKPAIAASGAAP   93 (314)
Q Consensus        16 ~l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~   93 (314)
                      ++-+++.+++..+.+.+..+..+++.-..+.+.+.--.++.-|..+  +..-|++|...++.+...+.+...+ ..|.+.
T Consensus        33 ~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~-~~~vvr  111 (371)
T PF14664_consen   33 MLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEI-PRGVVR  111 (371)
T ss_pred             HHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccC-CHHHHH
Confidence            3444458999999999997777888888888888767777777644  4556889999998877654433332 568899


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhc
Q 021317           94 LLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNS  173 (314)
Q Consensus        94 ~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~  173 (314)
                      .++.+.++.+...+..|+.+|+.++..+  -..+...|++..|++.+.++..  ++.+..+.++..+-.++..|+.+. .
T Consensus       112 alvaiae~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d~~~--~~~~~l~~~lL~lLd~p~tR~yl~-~  186 (371)
T PF14664_consen  112 ALVAIAEHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALIDGSF--SISESLLDTLLYLLDSPRTRKYLR-P  186 (371)
T ss_pred             HHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHhccH--hHHHHHHHHHHHHhCCcchhhhhc-C
Confidence            9999999999999999999999999542  3456789999999999998644  477888888889988888888775 2


Q ss_pred             cCCHHHHHHHhhcC-------CH--HHHHHHHHHHHHhhccCcHHHHHHHHH--cCChHHHHHhhhcCCHHHHHHHHHHH
Q 021317          174 DGGILTLVETVEDG-------SL--VSTQHAVGALLSLCQSCRDKYRQLILK--EGAIPGLLRLTVEGTFEAQERARTLL  242 (314)
Q Consensus       174 ~g~v~~Lv~ll~~~-------~~--~~~~~A~~~L~~L~~~~~~~~~~~i~~--~g~v~~Lv~ll~~~~~~~~~~A~~~L  242 (314)
                      .--++.++.-+.+.       +.  +--..+..++..+-...++  --.+..  ..+++.|+..++..++++++.-..++
T Consensus       187 ~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~G--Ll~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll  264 (371)
T PF14664_consen  187 GFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPG--LLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLL  264 (371)
T ss_pred             CccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCc--eeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            23355555555332       11  1223344444443333221  111111  14788888888888888887777766


Q ss_pred             HHh
Q 021317          243 DLL  245 (314)
Q Consensus       243 ~~l  245 (314)
                      ..+
T Consensus       265 ~dl  267 (371)
T PF14664_consen  265 FDL  267 (371)
T ss_pred             HHH
Confidence            665

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.86  E-value=0.0023  Score=58.14  Aligned_cols=158  Identities=28%  Similarity=0.283  Sum_probs=115.2

Q ss_pred             CCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhc-cCCHHHHHHHHHHHHHhcCCCCCchhh
Q 021317           49 GAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILH-SGSVQGRVDAVTALHYLSTCKENSSPI  127 (314)
Q Consensus        49 g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~-~~~~~~~~~a~~~L~nLs~~~~~~~~i  127 (314)
                      -.++.+..++.+.++.++..|+.+|+.+          .....++.++.++. +++..++..+..+|..+-...      
T Consensus        74 ~av~~l~~~l~d~~~~vr~~a~~aLg~~----------~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~------  137 (335)
T COG1413          74 EAVPLLRELLSDEDPRVRDAAADALGEL----------GDPEAVPPLVELLENDENEGVRAAAARALGKLGDER------  137 (335)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHcc----------CChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh------
Confidence            4578888899888888998888877777          55678899999998 588999999999998765432      


Q ss_pred             hhcCCcHHHHHHhhccCCch----------HHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHH
Q 021317          128 LDATAVPPLINLLKDCKKYS----------KFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVG  197 (314)
Q Consensus       128 ~~~g~i~~Lv~lL~~~~~~~----------~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~  197 (314)
                          ++.+++..+.+.....          .++..+...+..          +. +.-.++.+..++.+....++..|..
T Consensus       138 ----a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~----------~~-~~~~~~~l~~~l~~~~~~vr~~Aa~  202 (335)
T COG1413         138 ----ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGE----------LG-DPEAIPLLIELLEDEDADVRRAAAS  202 (335)
T ss_pred             ----hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHH----------cC-ChhhhHHHHHHHhCchHHHHHHHHH
Confidence                5888888888754211          111222222211          11 3456788999999988899999999


Q ss_pred             HHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 021317          198 ALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRD  247 (314)
Q Consensus       198 ~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~  247 (314)
                      +|..+...+          ....+.+...+.+.+..++..++..|..+..
T Consensus       203 aL~~~~~~~----------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~  242 (335)
T COG1413         203 ALGQLGSEN----------VEAADLLVKALSDESLEVRKAALLALGEIGD  242 (335)
T ss_pred             HHHHhhcch----------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc
Confidence            999988653          2345667777777888888777777766544

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.84  E-value=0.0018  Score=58.81  Aligned_cols=157  Identities=28%  Similarity=0.302  Sum_probs=116.3

Q ss_pred             CCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhh
Q 021317           49 GAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPIL  128 (314)
Q Consensus        49 g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~  128 (314)
                      -.++.+++.+.+++..++..++..++.+          ...-+++.+..+|.+.++.++..++.+|..+-..        
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~----------~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~--------  104 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGEL----------GSEEAVPLLRELLSDEDPRVRDAAADALGELGDP--------  104 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhh----------chHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCh--------
Confidence            4678899999998899999998886665          4567899999999999999999999987765433        


Q ss_pred             hcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCH------------HHHHHHH
Q 021317          129 DATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSL------------VSTQHAV  196 (314)
Q Consensus       129 ~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~------------~~~~~A~  196 (314)
                        ..++.|+.++.. +.+..++..+..+|..+..           ..++..++..+.+...            .++..+.
T Consensus       105 --~a~~~li~~l~~-d~~~~vR~~aa~aL~~~~~-----------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~  170 (335)
T COG1413         105 --EAVPPLVELLEN-DENEGVRAAAARALGKLGD-----------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAA  170 (335)
T ss_pred             --hHHHHHHHHHHc-CCcHhHHHHHHHHHHhcCc-----------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHH
Confidence              489999999996 2334777788887766543           3347778888876542            2333333


Q ss_pred             HHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCC
Q 021317          197 GALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP  249 (314)
Q Consensus       197 ~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~  249 (314)
                      ..|..+-            +...++.+...+.+.+..++..|..+|..+..+.
T Consensus       171 ~~l~~~~------------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~  211 (335)
T COG1413         171 EALGELG------------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN  211 (335)
T ss_pred             HHHHHcC------------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch
Confidence            3333332            1236888888999999999999999998887664

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=97.84  E-value=0.0049  Score=56.65  Aligned_cols=244  Identities=14%  Similarity=0.101  Sum_probs=171.8

Q ss_pred             hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccC--CHHHHHHHH
Q 021317           34 WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSG--SVQGRVDAV  111 (314)
Q Consensus        34 l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~--~~~~~~~a~  111 (314)
                      +..++++-|..+.-....+.+..++-+++.+++..+.++++.+..+.+.-..+.+.+.--.++.-|..+  +..-|++|+
T Consensus        10 l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QAL   89 (371)
T PF14664_consen   10 LLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQAL   89 (371)
T ss_pred             HHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHH
Confidence            566777767666655566777766666669999999999999999888888888877666777777654  456788999


Q ss_pred             HHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHH
Q 021317          112 TALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVS  191 (314)
Q Consensus       112 ~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~  191 (314)
                      ..++.+..-+.+... .-.|.+..++.+..+.++  +++..|+.+|+.++..++.  .+. +.|++..|++.+.++...+
T Consensus        90 kliR~~l~~~~~~~~-~~~~vvralvaiae~~~D--~lr~~cletL~El~l~~P~--lv~-~~gG~~~L~~~l~d~~~~~  163 (371)
T PF14664_consen   90 KLIRAFLEIKKGPKE-IPRGVVRALVAIAEHEDD--RLRRICLETLCELALLNPE--LVA-ECGGIRVLLRALIDGSFSI  163 (371)
T ss_pred             HHHHHHHHhcCCccc-CCHHHHHHHHHHHhCCch--HHHHHHHHHHHHHHhhCHH--HHH-HcCCHHHHHHHHHhccHhH
Confidence            999998865443332 256788889999988544  7889999999998875432  233 6899999999998887778


Q ss_pred             HHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcC-------CH--HHHHHHHHHHHHhhcCCchhhc----chhh
Q 021317          192 TQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEG-------TF--EAQERARTLLDLLRDTPQEKRL----SSSV  258 (314)
Q Consensus       192 ~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~-------~~--~~~~~A~~~L~~l~~~~~~~~~----~~~~  258 (314)
                      .+..+.++..+-..+  ..|+.+...--++.+..-+.+.       +.  +--..+..++..+-++.++-+.    ....
T Consensus       164 ~~~l~~~lL~lLd~p--~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~  241 (371)
T PF14664_consen  164 SESLLDTLLYLLDSP--RTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRG  241 (371)
T ss_pred             HHHHHHHHHHHhCCc--chhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchH
Confidence            899999999998765  4577666544466666533222       22  2334555566666666655211    1246


Q ss_pred             hHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 021317          259 LEKIVYDIAARVDGADKAAETAKRLLQDMV  288 (314)
Q Consensus       259 ~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~  288 (314)
                      +..++..|.  .. +++.++..-.++..+-
T Consensus       242 lksLv~~L~--~p-~~~ir~~Ildll~dll  268 (371)
T PF14664_consen  242 LKSLVDSLR--LP-NPEIRKAILDLLFDLL  268 (371)
T ss_pred             HHHHHHHHc--CC-CHHHHHHHHHHHHHHH
Confidence            666776665  22 3667777777776655

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.84  E-value=0.0014  Score=65.52  Aligned_cols=234  Identities=15%  Similarity=0.108  Sum_probs=161.3

Q ss_pred             cHHHHHHhcCCCHHHHHHHHHHHHHhccC-CCChhHH---hhcCcHHHHHHHhccCCHHHHHHHHHHHHHhc-CCCCCch
Q 021317           51 IPPLVELLKFQNGTLRELAAAAILTLSAA-APNKPAI---AASGAAPLLVQILHSGSVQGRVDAVTALHYLS-TCKENSS  125 (314)
Q Consensus        51 v~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~i---~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs-~~~~~~~  125 (314)
                      +|.++++|-+     +.+-+++|.-|+.+ |-+...+   ..-|+.|-.++||.++-.++|.....+=..+- .++..+.
T Consensus       474 LPiVLQVLLS-----QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~  548 (1387)
T KOG1517|consen  474 LPIVLQVLLS-----QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQA  548 (1387)
T ss_pred             cchHHHHHHH-----HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHH
Confidence            3445554433     23345566666654 2233332   25699999999999999888877766655554 6667777


Q ss_pred             hhhhcCCcHHHHHHhhc-cCCchHHHHHHHHHHHHhcCC-hhhhhHHHhccCCHHHHHHHhhcC-CHHHHHHHHHHHHHh
Q 021317          126 PILDATAVPPLINLLKD-CKKYSKFAEKATALLEILSSS-EEGRIAITNSDGGILTLVETVEDG-SLVSTQHAVGALLSL  202 (314)
Q Consensus       126 ~i~~~g~i~~Lv~lL~~-~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~v~~Lv~ll~~~-~~~~~~~A~~~L~~L  202 (314)
                      .+++.++-...+..|.. ..-.++-+..|.-+|.-++.+ .-.++... +.+.+...+++|.++ .+-++.+++.+|..|
T Consensus       549 dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl-~~~li~iCle~lnd~~~pLLrQW~~icLG~L  627 (1387)
T KOG1517|consen  549 DLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACL-NGNLIGICLEHLNDDPEPLLRQWLCICLGRL  627 (1387)
T ss_pred             HHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhc-cccHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence            88887777777777766 333335556677778888776 56777787 788999999999886 588999999999999


Q ss_pred             hccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCC----ch--hhc----c----hhhhHHHH-----
Q 021317          203 CQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP----QE--KRL----S----SSVLEKIV-----  263 (314)
Q Consensus       203 ~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~----~~--~~~----~----~~~~~~lv-----  263 (314)
                      =.+.+ +.|-.=++.++.++|..++.+..++++.+|+-+|..+-...    .+  ..+    .    ...+|..+     
T Consensus       628 W~d~~-~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~  706 (1387)
T KOG1517|consen  628 WEDYD-EARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLM  706 (1387)
T ss_pred             hhhcc-hhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHH
Confidence            87764 55555566899999999999999999999999999887642    11  111    0    01122221     


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHHHHHH
Q 021317          264 YDIAARVDGADKAAETAKRLLQDMVQRS  291 (314)
Q Consensus       264 ~~l~~~~~~~~~~~~~A~~~L~~l~~~s  291 (314)
                      ..+....+|++-.+.+..-.|.+++-..
T Consensus       707 ~ll~~vsdgsplvr~ev~v~ls~~~~g~  734 (1387)
T KOG1517|consen  707 SLLALVSDGSPLVRTEVVVALSHFVVGY  734 (1387)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHHHHhh
Confidence            2233335888888877888888887543

>TIGR02270 conserved hypothetical protein

Probab=97.83  E-value=0.00063  Score=63.23  Aligned_cols=153  Identities=19%  Similarity=0.035  Sum_probs=113.9

Q ss_pred             CCcHHHHHHhc-CCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhh
Q 021317           49 GAIPPLVELLK-FQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPI  127 (314)
Q Consensus        49 g~v~~Lv~lL~-~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i  127 (314)
                      .+++.++..|. .+++++...++.++...  .        ...++..|+..|.++++.++..++.+|..+          
T Consensus        54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~--~--------~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i----------  113 (410)
T TIGR02270        54 AATELLVSALAEADEPGRVACAALALLAQ--E--------DALDLRSVLAVLQAGPEGLCAGIQAALGWL----------  113 (410)
T ss_pred             hHHHHHHHHHhhCCChhHHHHHHHHHhcc--C--------ChHHHHHHHHHhcCCCHHHHHHHHHHHhcC----------
Confidence            45778888884 55677766554444322  1        122489999999999999999999998753          


Q ss_pred             hhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCc
Q 021317          128 LDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCR  207 (314)
Q Consensus       128 ~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~  207 (314)
                      ...+..+.|+.++.+.++  .++..++.++..           . .....+.+..+|++.++.++..|+.+|..+.... 
T Consensus       114 ~~~~a~~~L~~~L~~~~p--~vR~aal~al~~-----------r-~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~-  178 (410)
T TIGR02270       114 GGRQAEPWLEPLLAASEP--PGRAIGLAALGA-----------H-RHDPGPALEAALTHEDALVRAAALRALGELPRRL-  178 (410)
T ss_pred             CchHHHHHHHHHhcCCCh--HHHHHHHHHHHh-----------h-ccChHHHHHHHhcCCCHHHHHHHHHHHHhhcccc-
Confidence            334588899999987644  676666666654           1 2335678999999999999999999999987542 


Q ss_pred             HHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 021317          208 DKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRD  247 (314)
Q Consensus       208 ~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~  247 (314)
                                 .++.|...+.+.++.++..|++.+..+..
T Consensus       179 -----------a~~~L~~al~d~~~~VR~aA~~al~~lG~  207 (410)
T TIGR02270       179 -----------SESTLRLYLRDSDPEVRFAALEAGLLAGS  207 (410)
T ss_pred             -----------chHHHHHHHcCCCHHHHHHHHHHHHHcCC
Confidence                       56678888889999999999998876643

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.80  E-value=0.00025  Score=60.78  Aligned_cols=185  Identities=15%  Similarity=0.046  Sum_probs=112.7

Q ss_pred             cccCCHHHHHHHHHHhH-hhccC--chhHHHHHh--cCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCc
Q 021317           17 ETYFEGYARRLNLMGPL-WQLSK--TRNKVKIAT--AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGA   91 (314)
Q Consensus        17 l~~~~~~~~~~a~~al~-l~~~~--~~~~~~l~~--~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~   91 (314)
                      .++.+.+.|..|+..|. ++.++  ......+.+  ...+..+...+.+....+...|+.++..++..-...-.-.-...
T Consensus        16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~   95 (228)
T PF12348_consen   16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADIL   95 (228)
T ss_dssp             HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence            36678999999999998 66655  344444432  25667788888777788888999999999875332222223568


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCC-cHHHHHHhhccCCchHHHHHHHHHHHHhcCChh-hhhH
Q 021317           92 APLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATA-VPPLINLLKDCKKYSKFAEKATALLEILSSSEE-GRIA  169 (314)
Q Consensus        92 l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~-i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~-~~~~  169 (314)
                      +|.|++.+.++...++..|..+|..+...-....     .. .+.+...+.+.+  +.++..++..+..+..... ....
T Consensus        96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~-----~~~~~~l~~~~~~Kn--~~vR~~~~~~l~~~l~~~~~~~~~  168 (228)
T PF12348_consen   96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYSP-----KILLEILSQGLKSKN--PQVREECAEWLAIILEKWGSDSSV  168 (228)
T ss_dssp             HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-------HHHHHHHHHHTT-S---HHHHHHHHHHHHHHHTT-----GG
T ss_pred             HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHH-----HHHHHHHHHHHhCCC--HHHHHHHHHHHHHHHHHccchHhh
Confidence            8999999999999999999999999986543111     12 334444455543  4788888888877655433 2222


Q ss_pred             HHh---ccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcH
Q 021317          170 ITN---SDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRD  208 (314)
Q Consensus       170 i~~---~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~  208 (314)
                      +-.   -...++.+...+.+.++++|+.|-.+++.+....++
T Consensus       169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~  210 (228)
T PF12348_consen  169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE  210 (228)
T ss_dssp             G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred             hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence            210   023677888888999999999999999999776554

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=97.79  E-value=0.0016  Score=57.42  Aligned_cols=266  Identities=15%  Similarity=0.088  Sum_probs=175.1

Q ss_pred             ccccCCHHHHHHHHHHhH-hhccCchhH----HHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcC
Q 021317           16 METYFEGYARRLNLMGPL-WQLSKTRNK----VKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASG   90 (314)
Q Consensus        16 ~l~~~~~~~~~~a~~al~-l~~~~~~~~----~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g   90 (314)
                      .|..++..++.-++..+. +....+.|-    ..++.+|.++.++.+.-..+.++-..|...+..++..+..-..|.++.
T Consensus        90 GLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaaleaiFeSe  169 (524)
T KOG4413|consen   90 GLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESE  169 (524)
T ss_pred             cccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccc
Confidence            455667778888888777 666666443    344578999999999998899999999999999999999999998877


Q ss_pred             cHHHHH--HHhccCCHHHHHHHHHHHHHhc-CCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhh
Q 021317           91 AAPLLV--QILHSGSVQGRVDAVTALHYLS-TCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGR  167 (314)
Q Consensus        91 ~l~~Lv--~lL~~~~~~~~~~a~~~L~nLs-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~  167 (314)
                      .+.++-  ++-..-+.-.|...+..+..+. .+++.....-..|.+..|..=|+...+ .-+..+++.....|+...-.+
T Consensus       170 llDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteD-tLVianciElvteLaeteHgr  248 (524)
T KOG4413|consen  170 LLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTED-TLVIANCIELVTELAETEHGR  248 (524)
T ss_pred             cCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcc-eeehhhHHHHHHHHHHHhhhh
Confidence            666543  3333334456667777777776 555555566667888888777776433 256677888888898888888


Q ss_pred             hHHHhccCCHHHHHHHhhcCC--HHHHHHHHHHHHHhhccCcHHHHH-----HHHHc--CChHHHHHhhhcCCHHHHHHH
Q 021317          168 IAITNSDGGILTLVETVEDGS--LVSTQHAVGALLSLCQSCRDKYRQ-----LILKE--GAIPGLLRLTVEGTFEAQERA  238 (314)
Q Consensus       168 ~~i~~~~g~v~~Lv~ll~~~~--~~~~~~A~~~L~~L~~~~~~~~~~-----~i~~~--g~v~~Lv~ll~~~~~~~~~~A  238 (314)
                      +.+. +.|.|+.+..++...+  +=-+-.++.....+-..   +...     ++.+.  -++..-.+.+...|+..++.|
T Consensus       249 efla-QeglIdlicnIIsGadsdPfekfralmgfgkffgk---eaimdvseeaicealiiaidgsfEmiEmnDpdaieaA  324 (524)
T KOG4413|consen  249 EFLA-QEGLIDLICNIISGADSDPFEKFRALMGFGKFFGK---EAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAA  324 (524)
T ss_pred             hhcc-hhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcc---hHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHH
Confidence            8888 7999999999986533  22222344443333221   1111     12221  133444456667899999999


Q ss_pred             HHHHHHhhcCCchhhc--chh--hhHHHHHHHhhcCCCHHHH-HHHHHHHHHHHHH
Q 021317          239 RTLLDLLRDTPQEKRL--SSS--VLEKIVYDIAARVDGADKA-AETAKRLLQDMVQ  289 (314)
Q Consensus       239 ~~~L~~l~~~~~~~~~--~~~--~~~~lv~~l~~~~~~~~~~-~~~A~~~L~~l~~  289 (314)
                      +.++..+.....++.+  ..|  ..+.++....   +.+..+ ++.|..+|.++..
T Consensus       325 iDalGilGSnteGadlllkTgppaaehllaraf---dqnahakqeaaihaLaaIag  377 (524)
T KOG4413|consen  325 IDALGILGSNTEGADLLLKTGPPAAEHLLARAF---DQNAHAKQEAAIHALAAIAG  377 (524)
T ss_pred             HHHHHhccCCcchhHHHhccCChHHHHHHHHHh---cccccchHHHHHHHHHHhhc
Confidence            9999999876655322  222  3444543333   333333 4666677776653

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.78  E-value=6e-05  Score=45.69  Aligned_cols=40  Identities=38%  Similarity=0.488  Sum_probs=36.7

Q ss_pred             chhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhcc
Q 021317           39 TRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSA   78 (314)
Q Consensus        39 ~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~   78 (314)
                      ++++..+.+.|+++.|+++|.+++++++..++++|.||+.
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            4588899999999999999999899999999999999973

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.78  E-value=4.8e-05  Score=46.12  Aligned_cols=40  Identities=33%  Similarity=0.393  Sum_probs=36.3

Q ss_pred             CCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 021317           80 APNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLST  119 (314)
Q Consensus        80 ~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~  119 (314)
                      ++++..+.+.|++++|+++|.+++++++..++++|+||+.
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            3467888899999999999999999999999999999973

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.73  E-value=0.001  Score=62.73  Aligned_cols=241  Identities=14%  Similarity=0.077  Sum_probs=152.6

Q ss_pred             HHHHHHhccCCCChhHHhhcCcHHHHHHHh----------ccCCHHHHHHHHHHHHHhc-CCCCCchhhhhcCCcHHHHH
Q 021317           70 AAAILTLSAAAPNKPAIAASGAAPLLVQIL----------HSGSVQGRVDAVTALHYLS-TCKENSSPILDATAVPPLIN  138 (314)
Q Consensus        70 ~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL----------~~~~~~~~~~a~~~L~nLs-~~~~~~~~i~~~g~i~~Lv~  138 (314)
                      +.+|.-++.++.+...+....++..|.+.-          ...++.+...|+.+|+|+. .++..|..+++.|..+.+++
T Consensus         2 L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~   81 (446)
T PF10165_consen    2 LETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCE   81 (446)
T ss_pred             HHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHH
Confidence            567777888888888888777777777765          2347899999999999999 55678888999999999999


Q ss_pred             HhhccCC---chHHHHHHHHHHHHhcCC-hhhhhHHHhccCCHHHHHHHhhc-----------------CCHHHHHHHHH
Q 021317          139 LLKDCKK---YSKFAEKATALLEILSSS-EEGRIAITNSDGGILTLVETVED-----------------GSLVSTQHAVG  197 (314)
Q Consensus       139 lL~~~~~---~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~v~~Lv~ll~~-----------------~~~~~~~~A~~  197 (314)
                      .|+...+   ..++.--.+++|.-++.. .+.+..++.+.+++..+...|..                 .+......++.
T Consensus        82 ~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLK  161 (446)
T PF10165_consen   82 RLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILK  161 (446)
T ss_pred             HHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHH
Confidence            9998622   235666788888777654 67788888777888887776632                 12345677899


Q ss_pred             HHHHhhccCcHHHHHHHHHcCChHHHHHhhhcC---------CHHHHHHHHHHHHHhhcCCch--------------hhc
Q 021317          198 ALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEG---------TFEAQERARTLLDLLRDTPQE--------------KRL  254 (314)
Q Consensus       198 ~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~---------~~~~~~~A~~~L~~l~~~~~~--------------~~~  254 (314)
                      .+.|++.+.+.. .. -.....++.|+.++++-         ......+++.+|.|+--....              ...
T Consensus       162 llFNit~~~~~~-~~-~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~  239 (446)
T PF10165_consen  162 LLFNITLHYPKS-VP-EEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGD  239 (446)
T ss_pred             HHHHhhhccCcc-cc-hhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCC
Confidence            999998776531 11 12234566665543321         245667788888887321111              112


Q ss_pred             chhhhHHHHHHHhhcCCCHH--HHHHHHHHHHHHHHHHHHH-HhHHHHHHHhhhcCCCCCC
Q 021317          255 SSSVLEKIVYDIAARVDGAD--KAAETAKRLLQDMVQRSME-LSMTRIQQRAASSAPSKIP  312 (314)
Q Consensus       255 ~~~~~~~lv~~l~~~~~~~~--~~~~~A~~~L~~l~~~s~~-~~~~~~~~~~~~~~~~~~~  312 (314)
                      ....+..++..|-...+...  +..+...=+|..|.+-+.. +..++..+..-++...|.+
T Consensus       240 ~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~  300 (446)
T PF10165_consen  240 NMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRK  300 (446)
T ss_pred             ChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcc
Confidence            34456666665553332211  1123343344444433322 6677767766666554443

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.69  E-value=0.0061  Score=57.61  Aligned_cols=246  Identities=14%  Similarity=0.103  Sum_probs=163.5

Q ss_pred             cccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCC-----CHHHHHHHHHHHHHhccC-CCChhHHh-h
Q 021317           17 ETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQ-----NGTLRELAAAAILTLSAA-APNKPAIA-A   88 (314)
Q Consensus        17 l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-----~~~~~~~a~~~L~~La~~-~~~~~~i~-~   88 (314)
                      ...+++.+...|+++|. ....++..|..+.+.|..+.+++.|+..     +.++.....+.|.-++.. .+.+..+. +
T Consensus        41 ~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e  120 (446)
T PF10165_consen   41 FESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEE  120 (446)
T ss_pred             ccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence            45678999999999999 6678899999999999999999999765     688888888988887764 46666666 5


Q ss_pred             cCcHHHHHHHhcc-----------------CCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhcc-------C
Q 021317           89 SGAAPLLVQILHS-----------------GSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDC-------K  144 (314)
Q Consensus        89 ~g~l~~Lv~lL~~-----------------~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~-------~  144 (314)
                      .+++..++..|..                 .+......++.++.|+.........--..+.++.++.++..-       .
T Consensus       121 ~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~  200 (446)
T PF10165_consen  121 HHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSP  200 (446)
T ss_pred             hhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCC
Confidence            5888888877632                 134557788899999985443332212234566666655432       1


Q ss_pred             CchHHHHHHHHHHHHhcCC-hhh-------hhHH---HhccCCHHHHHHHhhc----CC----HHHHHHHHHHHHHhhcc
Q 021317          145 KYSKFAEKATALLEILSSS-EEG-------RIAI---TNSDGGILTLVETVED----GS----LVSTQHAVGALLSLCQS  205 (314)
Q Consensus       145 ~~~~~~~~a~~~L~~L~~~-~~~-------~~~i---~~~~g~v~~Lv~ll~~----~~----~~~~~~A~~~L~~L~~~  205 (314)
                      +.......+..+|.|+-.. .+.       ....   ......+..|+.+|..    ..    ......-+.+|..++..
T Consensus       201 ~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~  280 (446)
T PF10165_consen  201 PLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARA  280 (446)
T ss_pred             cchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHh
Confidence            2224455666666665211 011       0000   1123456778888753    11    24556677888888877


Q ss_pred             CcHHHHHHHHHc----------------CChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCch---hhcchhhhHHHH
Q 021317          206 CRDKYRQLILKE----------------GAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE---KRLSSSVLEKIV  263 (314)
Q Consensus       206 ~~~~~~~~i~~~----------------g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~---~~~~~~~~~~lv  263 (314)
                      +. ..|+.+...                ..-..|++++.+..+.++..+...|+.||+....   +....|---+++
T Consensus       281 ~~-~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~~~~v~~~GyG~AaG~L  356 (446)
T PF10165_consen  281 AR-EVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDASRFVKYVGYGNAAGFL  356 (446)
T ss_pred             cH-HHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhHHHHHHHcCchhHHHHH
Confidence            53 566666542                3455799999888899999999999999987754   344455444443

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.68  E-value=0.00017  Score=51.76  Aligned_cols=86  Identities=33%  Similarity=0.363  Sum_probs=66.9

Q ss_pred             HHHHHHHh-ccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHH
Q 021317           92 APLLVQIL-HSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAI  170 (314)
Q Consensus        92 l~~Lv~lL-~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i  170 (314)
                      ||.|++.| +++++.++..++.+|.++          .+..+++.|+.++++.  ++.++..|..+|..+.         
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~----------~~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~i~---------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGEL----------GDPEAIPALIELLKDE--DPMVRRAAARALGRIG---------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCC----------THHHHHHHHHHHHTSS--SHHHHHHHHHHHHCCH---------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHhHHHHHHHHHcCC--CHHHHHHHHHHHHHhC---------
Confidence            68899999 888999999999999843          2335799999999765  4488888888887662         


Q ss_pred             HhccCCHHHHHHHhhcCC-HHHHHHHHHHHH
Q 021317          171 TNSDGGILTLVETVEDGS-LVSTQHAVGALL  200 (314)
Q Consensus       171 ~~~~g~v~~Lv~ll~~~~-~~~~~~A~~~L~  200 (314)
                        ....++.|.+++.+++ ..++..|+.+|+
T Consensus        60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 --DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence              3458889999998754 556888888774

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.65  E-value=0.002  Score=64.54  Aligned_cols=201  Identities=16%  Similarity=0.123  Sum_probs=144.3

Q ss_pred             HHHhcCCcHHHHHHhcCCCHHHHHHHHHHHH--HhccCCCChhHHhhcCcHHHHHHHhccC---CHHHHHHHHHHHHHhc
Q 021317           44 KIATAGAIPPLVELLKFQNGTLRELAAAAIL--TLSAAAPNKPAIAASGAAPLLVQILHSG---SVQGRVDAVTALHYLS  118 (314)
Q Consensus        44 ~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~--~La~~~~~~~~i~~~g~l~~Lv~lL~~~---~~~~~~~a~~~L~nLs  118 (314)
                      .-..-|+.|.++++|+++..+++-- +..++  -||.++.++..+++.+|=...++.|.++   +++-|.-|+.+|..+.
T Consensus       507 LaLsVGIFPYVLKLLQS~a~ELrpi-LVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv  585 (1387)
T KOG1517|consen  507 LALSVGIFPYVLKLLQSSARELRPI-LVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIV  585 (1387)
T ss_pred             hhhccchHHHHHHHhccchHhhhhh-HHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHH
Confidence            3346799999999999988887643 33333  3788889999999888888888888773   5688999999999999


Q ss_pred             CC-CCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHH
Q 021317          119 TC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVG  197 (314)
Q Consensus       119 ~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~  197 (314)
                      .+ +-.++...+.+.+..-+..|.++. .+-++.-++-+|..|=.+.+..+....+.++.+.|..+|.+..+++|..|+.
T Consensus       586 ~nf~lGQ~acl~~~li~iCle~lnd~~-~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVF  664 (1387)
T KOG1517|consen  586 RNFKLGQKACLNGNLIGICLEHLNDDP-EPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVF  664 (1387)
T ss_pred             cccchhHHHhccccHHHHHHHHhcCCc-cHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHH
Confidence            65 456777888888888888888853 3355555555666665554444444337899999999999999999999999


Q ss_pred             HHHHhhccC---cHHHHHH-----------H-HHcCCh---HHHHHhhhcCCHHHHHHHHHHHHHhh
Q 021317          198 ALLSLCQSC---RDKYRQL-----------I-LKEGAI---PGLLRLTVEGTFEAQERARTLLDLLR  246 (314)
Q Consensus       198 ~L~~L~~~~---~~~~~~~-----------i-~~~g~v---~~Lv~ll~~~~~~~~~~A~~~L~~l~  246 (314)
                      +|..+-...   -++....           + ++....   ..++.+++++++-++..-+-+|..+.
T Consensus       665 ALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~  731 (1387)
T KOG1517|consen  665 ALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFV  731 (1387)
T ss_pred             HHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            998886632   1111111           1 122222   26777788888888877666766654

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=97.56  E-value=0.0025  Score=60.46  Aligned_cols=230  Identities=16%  Similarity=0.170  Sum_probs=147.5

Q ss_pred             hcCCcHHHHHHhc---CCCHHHHHHHHHHHHHhccC-CCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC
Q 021317           47 TAGAIPPLVELLK---FQNGTLRELAAAAILTLSAA-APNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKE  122 (314)
Q Consensus        47 ~~g~v~~Lv~lL~---~~~~~~~~~a~~~L~~La~~-~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~  122 (314)
                      +.+.+|.+-.++.   +....+|..|..+...+-.. +...    -.-.+|+++.-+.......+..++..|..++...+
T Consensus       211 EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~a----VK~llpsll~~l~~~kWrtK~aslellg~m~~~ap  286 (569)
T KOG1242|consen  211 EPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYA----VKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAP  286 (569)
T ss_pred             CchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcch----hhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhch
Confidence            4555555555554   34566777666665554321 1111    11234555555555566788999999999998877


Q ss_pred             CchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 021317          123 NSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSL  202 (314)
Q Consensus       123 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L  202 (314)
                      .+-...-..++|.+.+.|.+..+  +++..+..++..+++.-+|.. |.   -.+|.|+..+.+.+..+ ..+...|..=
T Consensus       287 ~qLs~~lp~iiP~lsevl~DT~~--evr~a~~~~l~~~~svidN~d-I~---~~ip~Lld~l~dp~~~~-~e~~~~L~~t  359 (569)
T KOG1242|consen  287 KQLSLCLPDLIPVLSEVLWDTKP--EVRKAGIETLLKFGSVIDNPD-IQ---KIIPTLLDALADPSCYT-PECLDSLGAT  359 (569)
T ss_pred             HHHHHHHhHhhHHHHHHHccCCH--HHHHHHHHHHHHHHHhhccHH-HH---HHHHHHHHHhcCcccch-HHHHHhhcce
Confidence            77777778899999999998765  889999999999998877776 32   27889999997765333 3344444333


Q ss_pred             hccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhcC-CCHHHHHHHHH
Q 021317          203 CQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARV-DGADKAAETAK  281 (314)
Q Consensus       203 ~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~-~~~~~~~~~A~  281 (314)
                      ++...   .+.---+=.+|.|-+-+...+...++.++.+..|++.--+++..-.-.++.|++.+..-. +-.++.|+-|.
T Consensus       360 tFV~~---V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaa  436 (569)
T KOG1242|consen  360 TFVAE---VDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAA  436 (569)
T ss_pred             eeeee---ecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHH
Confidence            32210   000000112444444555667888899999999999866444444556666666655322 33478899999


Q ss_pred             HHHHHHHHH
Q 021317          282 RLLQDMVQR  290 (314)
Q Consensus       282 ~~L~~l~~~  290 (314)
                      ++|.-+.++
T Consensus       437 rAL~~l~e~  445 (569)
T KOG1242|consen  437 RALGALLER  445 (569)
T ss_pred             HHHHHHHHH
Confidence            988666654

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.56  E-value=0.0027  Score=59.64  Aligned_cols=238  Identities=16%  Similarity=0.145  Sum_probs=151.3

Q ss_pred             cHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhh-
Q 021317           51 IPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILD-  129 (314)
Q Consensus        51 v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~-  129 (314)
                      +|.|-+.+...++..|...+..|..|-.-++-.-.=.-...++-|.+.|.+++++++..+-.+|.++-..-.++-..++ 
T Consensus       169 ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~  248 (675)
T KOG0212|consen  169 IPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDY  248 (675)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCc
Confidence            3333334444577788777777777654444322222356777888889999999998887766666533333333334 


Q ss_pred             cCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCH-HHHHHHHHH---HHHhhcc
Q 021317          130 ATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSL-VSTQHAVGA---LLSLCQS  205 (314)
Q Consensus       130 ~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~-~~~~~A~~~---L~~L~~~  205 (314)
                      ...++.++.-+.++.+  .++..|+..+..+..-....--.. -+|++..++.++.+..+ .+++.+...   |..++..
T Consensus       249 ~~~i~vlv~~l~ss~~--~iq~~al~Wi~efV~i~g~~~l~~-~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~  325 (675)
T KOG0212|consen  249 DDMINVLVPHLQSSEP--EIQLKALTWIQEFVKIPGRDLLLY-LSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSS  325 (675)
T ss_pred             ccchhhccccccCCcH--HHHHHHHHHHHHHhcCCCcchhhh-hhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhh
Confidence            4577788888877644  777888888887766544333333 47888888888877655 355554433   4444443


Q ss_pred             CcHHHHHHHHH-cCChHHHHHhhhcCCHHHHHHHH-HHHHHhhcCCchhhcc-hhhhHHHHHHHhhcCCCHHHHHHHHHH
Q 021317          206 CRDKYRQLILK-EGAIPGLLRLTVEGTFEAQERAR-TLLDLLRDTPQEKRLS-SSVLEKIVYDIAARVDGADKAAETAKR  282 (314)
Q Consensus       206 ~~~~~~~~i~~-~g~v~~Lv~ll~~~~~~~~~~A~-~~L~~l~~~~~~~~~~-~~~~~~lv~~l~~~~~~~~~~~~~A~~  282 (314)
                      .  ...+. ++ ...++.|.+++.++..+.+-.+. |+.....+++.+-... ......++..|.   |.++..-..+-.
T Consensus       326 ~--~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLs---d~sd~vvl~~L~  399 (675)
T KOG0212|consen  326 E--RLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLS---DRSDEVVLLALS  399 (675)
T ss_pred             h--hhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhc---CchhHHHHHHHH
Confidence            2  22222 44 34678888889888888888887 5666666666542222 335555666665   778888999999


Q ss_pred             HHHHHHHHHHHHhHH
Q 021317          283 LLQDMVQRSMELSMT  297 (314)
Q Consensus       283 ~L~~l~~~s~~~~~~  297 (314)
                      ++.++.+.+-+.+-+
T Consensus       400 lla~i~~s~~~~~~~  414 (675)
T KOG0212|consen  400 LLASICSSSNSPNLR  414 (675)
T ss_pred             HHHHHhcCcccccHH
Confidence            999998765554433

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=97.54  E-value=0.016  Score=58.52  Aligned_cols=120  Identities=18%  Similarity=0.182  Sum_probs=96.2

Q ss_pred             CHHHHHHHHHHhH-hhccCchhHHHHH----hcCCcHHHHHHhc-CCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHH
Q 021317           21 EGYARRLNLMGPL-WQLSKTRNKVKIA----TAGAIPPLVELLK-FQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPL   94 (314)
Q Consensus        21 ~~~~~~~a~~al~-l~~~~~~~~~~l~----~~g~v~~Lv~lL~-~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~   94 (314)
                      .++-.+.++.+|. +...+++-...+.    -.|-.+.+...+. .+++.++..|+..+..+..+.++-.-+++.|.+..
T Consensus      1738 s~~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~ 1817 (2235)
T KOG1789|consen 1738 TETKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTT 1817 (2235)
T ss_pred             hHHHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHH
Confidence            3556778899999 7777776554443    2366777887776 45889999999999999999999999999999999


Q ss_pred             HHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhh
Q 021317           95 LVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLK  141 (314)
Q Consensus        95 Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~  141 (314)
                      |+.+|++ -|..+..++.+|..|+++++..+...+.|++..+.+++-
T Consensus      1818 LL~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c 1863 (2235)
T KOG1789|consen 1818 LLTLLHS-QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILC 1863 (2235)
T ss_pred             HHHHHhc-ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHh
Confidence            9999976 456789999999999999888777888888777776553

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.53  E-value=0.0011  Score=63.39  Aligned_cols=169  Identities=11%  Similarity=0.025  Sum_probs=112.3

Q ss_pred             eeeccccCCHHHHHHHHHHhH-hhccCchhHHHHH--h--cCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHh
Q 021317           13 EVFMETYFEGYARRLNLMGPL-WQLSKTRNKVKIA--T--AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIA   87 (314)
Q Consensus        13 ~v~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~--~--~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~   87 (314)
                      +..+|.+++...++-|..||. .+..+.+.-..=.  +  .-.+|.++++.+++++.+|..|+.++........ +..+.
T Consensus       133 L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~-qal~~  211 (885)
T KOG2023|consen  133 LCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT-QALYV  211 (885)
T ss_pred             HHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc-HHHHH
Confidence            357889999999999999999 5555443322211  0  1347899999999999999999888776544322 22222


Q ss_pred             -hcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhh
Q 021317           88 -ASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEG  166 (314)
Q Consensus        88 -~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~  166 (314)
                       --..++.+..+-.+.++++|.+.+.++..|......|-.=-=.++++.++...++.++  .+.-.|+.....++..+..
T Consensus       212 ~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE--~VALEACEFwla~aeqpi~  289 (885)
T KOG2023|consen  212 HIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDE--NVALEACEFWLALAEQPIC  289 (885)
T ss_pred             HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcch--hHHHHHHHHHHHHhcCcCc
Confidence             2346667777778889999999999999998543222111114577778777777654  6777788888888888755


Q ss_pred             hhHHHhc-cCCHHHHHHHh
Q 021317          167 RIAITNS-DGGILTLVETV  184 (314)
Q Consensus       167 ~~~i~~~-~g~v~~Lv~ll  184 (314)
                      +..+... ...||.|++-|
T Consensus       290 ~~~L~p~l~kliPvLl~~M  308 (885)
T KOG2023|consen  290 KEVLQPYLDKLIPVLLSGM  308 (885)
T ss_pred             HHHHHHHHHHHHHHHHccC
Confidence            5544310 23455555433

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.48  E-value=0.0042  Score=59.97  Aligned_cols=114  Identities=18%  Similarity=0.217  Sum_probs=70.4

Q ss_pred             eeccccCCHHHHHHHHHHhH-hhc-cCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhcc-CCCChhHHhhcC
Q 021317           14 VFMETYFEGYARRLNLMGPL-WQL-SKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSA-AAPNKPAIAASG   90 (314)
Q Consensus        14 v~~l~~~~~~~~~~a~~al~-l~~-~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~-~~~~~~~i~~~g   90 (314)
                      +.++++..+-+|.+|+..+. .+- -.+.-|.      .+|.|++-|.++++.++..|+.++|.||. ++.|.-.+.   
T Consensus       150 ~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~------~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LA---  220 (877)
T KOG1059|consen  150 FTLLNSSKPYVRKKAILLLYKVFLKYPEALRP------CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLA---  220 (877)
T ss_pred             HHHHhcCchHHHHHHHHHHHHHHHhhhHhHhh------hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccccc---
Confidence            46778888999999988877 333 3333333      35889999999999999999999999997 455544442   


Q ss_pred             cHHHHHHHhccC-CHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhc
Q 021317           91 AAPLLVQILHSG-SVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKD  142 (314)
Q Consensus        91 ~l~~Lv~lL~~~-~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~  142 (314)
                        |.+..+|.+. +-=+....+....+|+.-++   + .....+++|.+++.+
T Consensus       221 --P~ffkllttSsNNWmLIKiiKLF~aLtplEP---R-LgKKLieplt~li~s  267 (877)
T KOG1059|consen  221 --PLFYKLLVTSSNNWVLIKLLKLFAALTPLEP---R-LGKKLIEPITELMES  267 (877)
T ss_pred             --HHHHHHHhccCCCeehHHHHHHHhhccccCc---h-hhhhhhhHHHHHHHh
Confidence              5555666543 22233444445555553221   0 112245555555544

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.44  E-value=0.0028  Score=50.55  Aligned_cols=121  Identities=18%  Similarity=0.145  Sum_probs=95.4

Q ss_pred             hhhhhcCCcHHHHHHhhccCC----chHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcC--CHHHHHHHHHH
Q 021317          125 SPILDATAVPPLINLLKDCKK----YSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDG--SLVSTQHAVGA  198 (314)
Q Consensus       125 ~~i~~~g~i~~Lv~lL~~~~~----~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~--~~~~~~~A~~~  198 (314)
                      ..+...|++..|++++.++..    .......++.++..|-.+...-.... +...|..++.++...  +..+...|+..
T Consensus         5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l-~~~FI~Kia~~Vn~~~~d~~i~q~sLaI   83 (160)
T PF11841_consen    5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTL-SDSFIKKIASYVNSSAMDASILQRSLAI   83 (160)
T ss_pred             HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhc-cHHHHHHHHHHHccccccchHHHHHHHH
Confidence            356778999999999999864    34666778888888887765555555 566788888888653  47899999999


Q ss_pred             HHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 021317          199 LLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRD  247 (314)
Q Consensus       199 L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~  247 (314)
                      |-++..+++ ..-..+.++=-++.|+..++..++.+|.+|.+++..|-.
T Consensus        84 LEs~Vl~S~-~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~  131 (160)
T PF11841_consen   84 LESIVLNSP-KLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFL  131 (160)
T ss_pred             HHHHHhCCH-HHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            999998764 445555566679999999999999999999998877643

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.44  E-value=0.00016  Score=47.13  Aligned_cols=55  Identities=25%  Similarity=0.210  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHh
Q 021317           63 GTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYL  117 (314)
Q Consensus        63 ~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nL  117 (314)
                      +.+|..|+.+|++++........-.....++.|+.+|.++++.+|..|+++|.+|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            4688999999999887655444445678999999999999999999999999875

...

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.40  E-value=0.027  Score=54.65  Aligned_cols=222  Identities=15%  Similarity=0.111  Sum_probs=138.8

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhcc-CCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhc-CCCCCchhhhhc
Q 021317           53 PLVELLKFQNGTLRELAAAAILTLSA-AAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLS-TCKENSSPILDA  130 (314)
Q Consensus        53 ~Lv~lL~~~~~~~~~~a~~~L~~La~-~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs-~~~~~~~~i~~~  130 (314)
                      -++.+|.+..+-+|..|..++..+.. .++.     =.-.+|.|++-|+++|+.++..|..+++.|+ .+|.|.-.    
T Consensus       148 Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA-----lr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~----  218 (877)
T KOG1059|consen  148 DVFTLLNSSKPYVRKKAILLLYKVFLKYPEA-----LRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQ----  218 (877)
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHHHHhhhHh-----HhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccc----
Confidence            45677788888899999888888654 2221     1235689999999999999999999999999 56656443    


Q ss_pred             CCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCC-HHHHHHHHHHH--HHhhccCc
Q 021317          131 TAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGS-LVSTQHAVGAL--LSLCQSCR  207 (314)
Q Consensus       131 g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~-~~~~~~A~~~L--~~L~~~~~  207 (314)
                       .-|.+.++|-+.+.+.- .-..+.++.+|+.-.+-   +.  ...++.|..++.+.+ ..+.-.|..+.  .+++.+.+
T Consensus       219 -LAP~ffkllttSsNNWm-LIKiiKLF~aLtplEPR---Lg--KKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~  291 (877)
T KOG1059|consen  219 -LAPLFYKLLVTSSNNWV-LIKLLKLFAALTPLEPR---LG--KKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMS  291 (877)
T ss_pred             -ccHHHHHHHhccCCCee-hHHHHHHHhhccccCch---hh--hhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCC
Confidence             34677888876544322 34566666677665332   22  346778999998755 23333343333  14444322


Q ss_pred             HHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 021317          208 DKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDM  287 (314)
Q Consensus       208 ~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l  287 (314)
                      +......   -+++.|--++.+.|+..+--+..++..+..-.+. .+++ -. .++....  .|.++-.+-+|-.+|--|
T Consensus       292 d~~asiq---LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~-~Vqa-~k-dlIlrcL--~DkD~SIRlrALdLl~gm  363 (877)
T KOG1059|consen  292 DHSASIQ---LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPK-AVQA-HK-DLILRCL--DDKDESIRLRALDLLYGM  363 (877)
T ss_pred             CcHHHHH---HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHH-HHHH-hH-HHHHHHh--ccCCchhHHHHHHHHHHH
Confidence            2111111   2577788888899999999999999998864432 1111 11 1222222  355566777777777777


Q ss_pred             HHHHHHHhHHHHHH
Q 021317          288 VQRSMELSMTRIQQ  301 (314)
Q Consensus       288 ~~~s~~~~~~~~~~  301 (314)
                      +.   +.|...|++
T Consensus       364 Vs---kkNl~eIVk  374 (877)
T KOG1059|consen  364 VS---KKNLMEIVK  374 (877)
T ss_pred             hh---hhhHHHHHH
Confidence            74   445444443

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=97.38  E-value=0.00042  Score=64.60  Aligned_cols=139  Identities=17%  Similarity=0.087  Sum_probs=110.8

Q ss_pred             HHHHHHHHHhcCC-CCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhh-hhHHHhccCCHHHHHHHhh
Q 021317          108 VDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEG-RIAITNSDGGILTLVETVE  185 (314)
Q Consensus       108 ~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~-~~~i~~~~g~v~~Lv~ll~  185 (314)
                      ..++.+|.+++.+ .-.|.-+.+..+.++|+++|+.+..  .+.-.++..++|+..--++ +..+. +.|.+..|+.++.
T Consensus       407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Pei--mi~~~~t~~icn~vv~fsnL~~~fL-~~~iIdvl~~~v~  483 (743)
T COG5369         407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEI--MIEFPDTIDICNKVVPFSNLGAGFL-EKSIIDVLVNLVM  483 (743)
T ss_pred             HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccc--eeeccchhhhhheeeeccchHHHHH-HhhHHHHHHHHhh
Confidence            3445556666643 2356667778899999999988544  4555678889998877555 55666 7999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCC
Q 021317          186 DGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP  249 (314)
Q Consensus       186 ~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~  249 (314)
                      +.+..+|.+..|.|+++..+++++-+-.+....++..++.+..+.+-.+|+.+..+|+|+....
T Consensus       484 sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~  547 (743)
T COG5369         484 SKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDT  547 (743)
T ss_pred             cchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccccc
Confidence            8889999999999999988876544556777788999999999999999999999999997644

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.36  E-value=0.00077  Score=49.65  Aligned_cols=60  Identities=20%  Similarity=0.208  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhh--hcCCHHHHHHHHHHHHHhhcCCch
Q 021317          191 STQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLT--VEGTFEAQERARTLLDLLRDTPQE  251 (314)
Q Consensus       191 ~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll--~~~~~~~~~~A~~~L~~l~~~~~~  251 (314)
                      .+...+.+++|||..++ .++..+++.|+++.++...  .+.+|.+++.|.+++++|+..+++
T Consensus         2 ~K~~lvrlianl~~~~~-~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~e   63 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNK-EVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPE   63 (102)
T ss_pred             cHHHHHHHHHHHHhCCH-HHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHH
Confidence            35678899999998875 8899999999999999854  456799999999999999998854

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=97.34  E-value=0.022  Score=54.23  Aligned_cols=210  Identities=15%  Similarity=0.154  Sum_probs=133.0

Q ss_pred             CCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHH
Q 021317           20 FEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQI   98 (314)
Q Consensus        20 ~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~l   98 (314)
                      ....+|+.|..+.. ....-+.....    -.+|.++.-+.......+..++..|+.++.+...+-...-+..+|.+.+.
T Consensus       228 ~~~~Vr~Aa~~a~kai~~~~~~~aVK----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsev  303 (569)
T KOG1242|consen  228 KINKVREAAVEAAKAIMRCLSAYAVK----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEV  303 (569)
T ss_pred             cchhhhHHHHHHHHHHHHhcCcchhh----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHH
Confidence            45667777777665 33222222111    12333443333335567788899999999888777777788999999999


Q ss_pred             hccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCC--
Q 021317           99 LHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGG--  176 (314)
Q Consensus        99 L~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~--  176 (314)
                      |-+..++++..+..+|..++.--+|.. |..  .+|.|++.+.++..  . ...+...|   ....-.. . + +.-.  
T Consensus       304 l~DT~~evr~a~~~~l~~~~svidN~d-I~~--~ip~Lld~l~dp~~--~-~~e~~~~L---~~ttFV~-~-V-~~psLa  371 (569)
T KOG1242|consen  304 LWDTKPEVRKAGIETLLKFGSVIDNPD-IQK--IIPTLLDALADPSC--Y-TPECLDSL---GATTFVA-E-V-DAPSLA  371 (569)
T ss_pred             HccCCHHHHHHHHHHHHHHHHhhccHH-HHH--HHHHHHHHhcCccc--c-hHHHHHhh---cceeeee-e-e-cchhHH
Confidence            999999999999999999997766665 222  57888888887652  1 12333333   2221110 0 1 1223  


Q ss_pred             --HHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHH--cCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 021317          177 --ILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK--EGAIPGLLRLTVEGTFEAQERARTLLDLLRD  247 (314)
Q Consensus       177 --v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~--~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~  247 (314)
                        +|.|-+-+...+...+..++.+.+|+|.--++  ...+..  .-.+|-|-..+.+..|++|.-+..+|..+-+
T Consensus       372 lmvpiL~R~l~eRst~~kr~t~~IidNm~~LveD--p~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e  444 (569)
T KOG1242|consen  372 LMVPILKRGLAERSTSIKRKTAIIIDNMCKLVED--PKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLE  444 (569)
T ss_pred             HHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcC--HHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence              34444445556777889999999999986532  222222  1234444445555679999999999977654

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.34  E-value=0.00066  Score=44.15  Aligned_cols=55  Identities=20%  Similarity=0.182  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 021317          189 LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLL  245 (314)
Q Consensus       189 ~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l  245 (314)
                      +.+|..|+++|.+++...++..+.  ....+++.|+.+++++++.++.+|+++|.+|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~--~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQP--YLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHH--HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHH--HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            468899999999998777543333  3356899999999999999999999999865

...

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.27  E-value=0.0017  Score=47.87  Aligned_cols=65  Identities=18%  Similarity=0.259  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHhcCC-hhhhhHHHhccCCHHHHHHHhh--cCCHHHHHHHHHHHHHhhccCcHHHHHHHHH
Q 021317          150 AEKATALLEILSSS-EEGRIAITNSDGGILTLVETVE--DGSLVSTQHAVGALLSLCQSCRDKYRQLILK  216 (314)
Q Consensus       150 ~~~a~~~L~~L~~~-~~~~~~i~~~~g~v~~Lv~ll~--~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~  216 (314)
                      +.....+|.||+.. +.++..+. +.|+++.++....  +.+|-++++|..++.||+..++ ++++.+.+
T Consensus         3 K~~lvrlianl~~~~~~~Qd~vr-~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~-eNQ~~I~~   70 (102)
T PF09759_consen    3 KRDLVRLIANLCYKNKEVQDLVR-ELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNP-ENQEFIAQ   70 (102)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHH-HcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCH-HHHHHHHh
Confidence            34577889999877 56677776 7899999999764  4569999999999999999985 77877765

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.25  E-value=0.0043  Score=59.38  Aligned_cols=180  Identities=20%  Similarity=0.185  Sum_probs=115.9

Q ss_pred             cHHHHHHhcCCCHHHHHHHHHHHHHhccC-----C-C-ChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC---
Q 021317           51 IPPLVELLKFQNGTLRELAAAAILTLSAA-----A-P-NKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC---  120 (314)
Q Consensus        51 v~~Lv~lL~~~~~~~~~~a~~~L~~La~~-----~-~-~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~---  120 (314)
                      ....++++.+.+.++|..|+..+.-.+.-     + + +..... -.++..+...+++.+-.+|..|+.+|+.+-..   
T Consensus       236 Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~-D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee  314 (823)
T KOG2259|consen  236 YSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLK-DAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEE  314 (823)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhH-HHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHH
Confidence            45678888888899998887666554431     1 1 111111 23566777777777777777777666654320   


Q ss_pred             ------------------------------------------------CCCchhhhhcCCcHHHHHHhhccCCchHHHHH
Q 021317          121 ------------------------------------------------KENSSPILDATAVPPLINLLKDCKKYSKFAEK  152 (314)
Q Consensus       121 ------------------------------------------------~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~  152 (314)
                                                                      ++....|+..|+=-.++.-+.+.-  -+++.+
T Consensus       315 ~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf--~EVR~A  392 (823)
T KOG2259|consen  315 IIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEF--YEVRRA  392 (823)
T ss_pred             HHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHH--HHHHHH
Confidence                                                            111223344444455555555432  267888


Q ss_pred             HHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCH
Q 021317          153 ATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTF  232 (314)
Q Consensus       153 a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~  232 (314)
                      |...++.|+.....-   .  ..++.-|+.++.+....+|..|..+|..++.+-  ..     ++.-++.++..+.+.++
T Consensus       393 AV~Sl~~La~ssP~F---A--~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l--~i-----~eeql~~il~~L~D~s~  460 (823)
T KOG2259|consen  393 AVASLCSLATSSPGF---A--VRALDFLVDMFNDEIEVVRLKAIFALTMISVHL--AI-----REEQLRQILESLEDRSV  460 (823)
T ss_pred             HHHHHHHHHcCCCCc---H--HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh--ee-----cHHHHHHHHHHHHhcCH
Confidence            889898888753321   1  235678999998888999999999999998542  22     22346777788888888


Q ss_pred             HHHHHHHHHHHHh
Q 021317          233 EAQERARTLLDLL  245 (314)
Q Consensus       233 ~~~~~A~~~L~~l  245 (314)
                      .++++.-.+|.+.
T Consensus       461 dvRe~l~elL~~~  473 (823)
T KOG2259|consen  461 DVREALRELLKNA  473 (823)
T ss_pred             HHHHHHHHHHHhc
Confidence            9988877777664

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=97.18  E-value=0.034  Score=47.92  Aligned_cols=187  Identities=17%  Similarity=0.108  Sum_probs=124.0

Q ss_pred             CHHHHHHHHHHHHHhccCCCChhHHh--hcCcHHHHHHHhc-------cCC-----HHHHHHHHHHHHHhcCCCCCchhh
Q 021317           62 NGTLRELAAAAILTLSAAAPNKPAIA--ASGAAPLLVQILH-------SGS-----VQGRVDAVTALHYLSTCKENSSPI  127 (314)
Q Consensus        62 ~~~~~~~a~~~L~~La~~~~~~~~i~--~~g~l~~Lv~lL~-------~~~-----~~~~~~a~~~L~nLs~~~~~~~~i  127 (314)
                      +++.|+.|+.-|..--..-++-..+.  ..|.+..|++=.-       .++     ..-..+|+..|..++.+++.|..+
T Consensus         8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F   87 (262)
T PF04078_consen    8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF   87 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred             CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence            57778766555544333223333333  3466666654332       221     234577888888999999999999


Q ss_pred             hhcCCcHHHHHHhhccCCc---hHHHHHHHHHHHHhcCC--hhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 021317          128 LDATAVPPLINLLKDCKKY---SKFAEKATALLEILSSS--EEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSL  202 (314)
Q Consensus       128 ~~~g~i~~Lv~lL~~~~~~---~~~~~~a~~~L~~L~~~--~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L  202 (314)
                      +++...-.|...|...+..   +.++-.++++++.|...  .+....+. +...+|..++.|..|+...+..|..++..+
T Consensus        88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl-~tEiiplcLr~me~GselSKtvAtfIlqKI  166 (262)
T PF04078_consen   88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLL-QTEIIPLCLRIMEFGSELSKTVATFILQKI  166 (262)
T ss_dssp             HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHH-CTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHH-hhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            9999888888888765432   35667889999999875  44556666 789999999999999998899999998887


Q ss_pred             hccCcHHHHHHH-------HH-cCChHHHHH-hhhcCCHHHHHHHHHHHHHhhcCCch
Q 021317          203 CQSCRDKYRQLI-------LK-EGAIPGLLR-LTVEGTFEAQERARTLLDLLRDTPQE  251 (314)
Q Consensus       203 ~~~~~~~~~~~i-------~~-~g~v~~Lv~-ll~~~~~~~~~~A~~~L~~l~~~~~~  251 (314)
                      -.++  .+-+.+       .. ..++..++. +.+..+++.-++.+++-..|+.++..
T Consensus       167 L~dd--~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpra  222 (262)
T PF04078_consen  167 LLDD--VGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRA  222 (262)
T ss_dssp             HHSH--HHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTH
T ss_pred             Hcch--hHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHH
Confidence            6543  222222       21 234455554 56677999999999999999998853

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=97.12  E-value=0.0033  Score=58.82  Aligned_cols=180  Identities=10%  Similarity=0.029  Sum_probs=131.0

Q ss_pred             hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhcc-CCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHH
Q 021317           34 WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSA-AAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVT  112 (314)
Q Consensus        34 l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~-~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~  112 (314)
                      +...-.--|.-+.+..++++|++.|++|+--+..-+...++|+.. ...-+..+.+.|.+..|++++.+.+..++.+..|
T Consensus       416 ~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~w  495 (743)
T COG5369         416 MSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEW  495 (743)
T ss_pred             hhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchh
Confidence            444445566677788899999999998777677778889999765 4566788889999999999999999999999999


Q ss_pred             HHHHhcCCCCC--chhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCCh-h---hhhHHHh---ccCCHHHHHHH
Q 021317          113 ALHYLSTCKEN--SSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE-E---GRIAITN---SDGGILTLVET  183 (314)
Q Consensus       113 ~L~nLs~~~~~--~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~-~---~~~~i~~---~~g~v~~Lv~l  183 (314)
                      +|+.+..+.++  +-.....-++..++++..++.  ..++..++.+|.|+..+. .   .+.....   ..=....|+..
T Consensus       496 vlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc--~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k  573 (743)
T COG5369         496 VLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPC--FKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDK  573 (743)
T ss_pred             hhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcc--cccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHH
Confidence            99999966543  445666778899999998753  388899999999997642 2   2222220   00023356666


Q ss_pred             hhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHH
Q 021317          184 VEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK  216 (314)
Q Consensus       184 l~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~  216 (314)
                      +...++-..+..+-.|.+++..+. +.+..+.+
T Consensus       574 ~e~~np~~i~~~~yilv~~aa~d~-~l~~~V~~  605 (743)
T COG5369         574 YEENNPMEILEGCYILVRNAACDD-TLDYIVQS  605 (743)
T ss_pred             HHhcCchhhhhhHHHHHHHHhccc-hHHHHHHh
Confidence            666666666677888888887763 44444443

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=97.06  E-value=0.049  Score=48.34  Aligned_cols=231  Identities=15%  Similarity=0.041  Sum_probs=150.4

Q ss_pred             cccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHH--HHHhcCCCHHHHHHHHHHHHHhcc-CCCChhHHhhcCcHH
Q 021317           17 ETYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPL--VELLKFQNGTLRELAAAAILTLSA-AAPNKPAIAASGAAP   93 (314)
Q Consensus        17 l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~L--v~lL~~~~~~~~~~a~~~L~~La~-~~~~~~~i~~~g~l~   93 (314)
                      +-.+|.++-..|...+.-.+..+..-..+.++.....+  .++-...+.-.|......+..+.. ++........+|.+.
T Consensus       137 IggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLld  216 (524)
T KOG4413|consen  137 IGGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLD  216 (524)
T ss_pred             HcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHH
Confidence            34556777777777777445556666666666555443  222223345566667777777655 456677777889888


Q ss_pred             HHHHHhcc-CCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHH----HHHHHhcCChhhhh
Q 021317           94 LLVQILHS-GSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKAT----ALLEILSSSEEGRI  168 (314)
Q Consensus        94 ~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~----~~L~~L~~~~~~~~  168 (314)
                      .|..-|.. .+.-++.+++.....|+..+-.++.+.+.|.|+.+..++...+.++=-.-.++    ..+.+.+..+-.-+
T Consensus       217 lLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvsee  296 (524)
T KOG4413|consen  217 LLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEE  296 (524)
T ss_pred             HHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHH
Confidence            88887776 57778899999999999988899999999999999999987554321111122    22333332221111


Q ss_pred             HHHh-ccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcC--ChHHHHHhhhcCC-HHHHHHHHHHHHH
Q 021317          169 AITN-SDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEG--AIPGLLRLTVEGT-FEAQERARTLLDL  244 (314)
Q Consensus       169 ~i~~-~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g--~v~~Lv~ll~~~~-~~~~~~A~~~L~~  244 (314)
                      +++. -.-+|+..++++...++..++.|..++..|.+..  +..+.+...|  ..+.++.-.-+.+ ..-++.+..+|.+
T Consensus       297 aicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnt--eGadlllkTgppaaehllarafdqnahakqeaaihaLaa  374 (524)
T KOG4413|consen  297 AICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNT--EGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAA  374 (524)
T ss_pred             HHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCc--chhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHH
Confidence            1110 0125666777788888999999999999998776  5577777755  3455554333333 4446677778888


Q ss_pred             hhcCC
Q 021317          245 LRDTP  249 (314)
Q Consensus       245 l~~~~  249 (314)
                      ++..-
T Consensus       375 Iagel  379 (524)
T KOG4413|consen  375 IAGEL  379 (524)
T ss_pred             hhccc
Confidence            87533

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=97.00  E-value=0.14  Score=48.83  Aligned_cols=249  Identities=14%  Similarity=0.103  Sum_probs=123.8

Q ss_pred             cccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcC-----
Q 021317           17 ETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASG-----   90 (314)
Q Consensus        17 l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g-----   90 (314)
                      |++..+.++..+.+++. ++.++-  -..+.+ ..|+.|-.+|+++....|..|.++|..|+.....+.......     
T Consensus       273 ls~k~emV~lE~Ar~v~~~~~~nv--~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLI  349 (898)
T COG5240         273 LSDKFEMVFLEAARAVCALSEENV--GSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLI  349 (898)
T ss_pred             hcCcchhhhHHHHHHHHHHHHhcc--CHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHh
Confidence            34445677777777766 443331  112222 346677788889999999999999999998543333222211     


Q ss_pred             -------cHHHHHHHhccCCHHHHHHHHHHHHHhcCC--CCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhc
Q 021317           91 -------AAPLLVQILHSGSVQGRVDAVTALHYLSTC--KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILS  161 (314)
Q Consensus        91 -------~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~  161 (314)
                             ..=++..+|+.+..+........|-+...+  +.-+..+++  ++..|.-...+.      ...-+..|.+.-
T Consensus       350 sd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~id--a~rsLsl~Fp~k------~~s~l~FL~~~L  421 (898)
T COG5240         350 SDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAID--ALRSLSLLFPSK------KLSYLDFLGSSL  421 (898)
T ss_pred             hcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHH--HHHHHHhhCcHH------HHHHHHHHHHHH
Confidence                   111333445555444444444444444322  111221111  222221111110      111222222211


Q ss_pred             C---ChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHH-------cC--------ChHHH
Q 021317          162 S---SEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK-------EG--------AIPGL  223 (314)
Q Consensus       162 ~---~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~-------~g--------~v~~L  223 (314)
                      .   .-+.++.+      |+.+..+++. .|.-+|.|+..|+..-.++  ++-+..++       +|        .+..+
T Consensus       422 ~~eGg~eFK~~~------Vdaisd~~~~-~p~skEraLe~LC~fIEDc--ey~~I~vrIL~iLG~EgP~a~~P~~yvrhI  492 (898)
T COG5240         422 LQEGGLEFKKYM------VDAISDAMEN-DPDSKERALEVLCTFIEDC--EYHQITVRILGILGREGPRAKTPGKYVRHI  492 (898)
T ss_pred             HhcccchHHHHH------HHHHHHHHhh-CchHHHHHHHHHHHHHhhc--chhHHHHHHHHHhcccCCCCCCcchHHHHH
Confidence            1   11222222      3345555543 3455677776666654443  22222221       11        23333


Q ss_pred             HHhhhcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 021317          224 LRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMV  288 (314)
Q Consensus       224 v~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~  288 (314)
                      ..=+--++.-++..|+.+|..++-.-..+.. ..-++.++....  .|.++..+++|.-+|++|.
T Consensus       493 yNR~iLEN~ivRsaAv~aLskf~ln~~d~~~-~~sv~~~lkRcl--nD~DdeVRdrAsf~l~~~~  554 (898)
T COG5240         493 YNRLILENNIVRSAAVQALSKFALNISDVVS-PQSVENALKRCL--NDQDDEVRDRASFLLRNMR  554 (898)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHhccCcccccc-HHHHHHHHHHHh--hcccHHHHHHHHHHHHhhh
Confidence            3322225677888888888887755544332 333333444444  5777889999999999987

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=96.97  E-value=0.065  Score=45.62  Aligned_cols=150  Identities=16%  Similarity=0.052  Sum_probs=109.4

Q ss_pred             CHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcC-----CCHHHHHHHHHHHHHhccCCCC--hhHHhhcCcHH
Q 021317           21 EGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKF-----QNGTLRELAAAAILTLSAAAPN--KPAIAASGAAP   93 (314)
Q Consensus        21 ~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~-----~~~~~~~~a~~~L~~La~~~~~--~~~i~~~g~l~   93 (314)
                      +..-...++.-+.-...+++.|..+.++..--.|-.+|..     +.+-.|..++.+++.|..+++.  -..+.+.++||
T Consensus        92 qsnRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVP  171 (293)
T KOG3036|consen   92 QSNRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVP  171 (293)
T ss_pred             ccchHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHH
Confidence            3444455555555555678999999998876667777743     2466888999999999987653  33445889999


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhh--------cCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChh
Q 021317           94 LLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILD--------ATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEE  165 (314)
Q Consensus        94 ~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~--------~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~  165 (314)
                      ..++.++.+++..+..|..++..+-.++..-..+-+        .-.+..++.-+.+ .+...+...+.++..+|+.++.
T Consensus       172 lCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~-~ps~RllKhviRcYlrLsdnpr  250 (293)
T KOG3036|consen  172 LCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVS-MPSPRLLKHVIRCYLRLSDNPR  250 (293)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhcCCHH
Confidence            999999999999999999999999988876655544        1123333333333 2344788889999999999888


Q ss_pred             hhhHHH
Q 021317          166 GRIAIT  171 (314)
Q Consensus       166 ~~~~i~  171 (314)
                      .|..+.
T Consensus       251 ar~aL~  256 (293)
T KOG3036|consen  251 ARAALR  256 (293)
T ss_pred             HHHHHH
Confidence            877765

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=96.88  E-value=0.076  Score=45.22  Aligned_cols=146  Identities=12%  Similarity=0.084  Sum_probs=107.3

Q ss_pred             HHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhcc---CCchHHHHHHHHHHHHhcCCh--hhhhHHHhccCCHH
Q 021317          104 VQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDC---KKYSKFAEKATALLEILSSSE--EGRIAITNSDGGIL  178 (314)
Q Consensus       104 ~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~---~~~~~~~~~a~~~L~~L~~~~--~~~~~i~~~~g~v~  178 (314)
                      ..-..+++..|..++..++.|..++++..--.+-.+|..+   .+.+-++-.+++++..|..++  +....+. ..++||
T Consensus        93 snRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl-~TeIVP  171 (293)
T KOG3036|consen   93 SNRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLL-TTEIVP  171 (293)
T ss_pred             cchHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHH-HhhhHH
Confidence            3456788999999999999999999987666666666543   233467788999999998663  3455556 799999


Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHHhhccCcH-----HHHHHHHH-cCChHHHH-HhhhcCCHHHHHHHHHHHHHhhcCCc
Q 021317          179 TLVETVEDGSLVSTQHAVGALLSLCQSCRD-----KYRQLILK-EGAIPGLL-RLTVEGTFEAQERARTLLDLLRDTPQ  250 (314)
Q Consensus       179 ~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~-----~~~~~i~~-~g~v~~Lv-~ll~~~~~~~~~~A~~~L~~l~~~~~  250 (314)
                      .+++.+..|+..-+..|..++..+-.++.+     ..-+.+-. .-.+..++ ++.+.++++.-++.+++.-+|++.++
T Consensus       172 lCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnpr  250 (293)
T KOG3036|consen  172 LCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPR  250 (293)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHH
Confidence            999999999999999999999887655421     11111211 12344444 35667899999999999999998875

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.87  E-value=0.029  Score=54.35  Aligned_cols=219  Identities=15%  Similarity=0.091  Sum_probs=117.5

Q ss_pred             CHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC-C-CChhHHhhcCcHHHHHH
Q 021317           21 EGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA-A-PNKPAIAASGAAPLLVQ   97 (314)
Q Consensus        21 ~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~-~~~~~i~~~g~l~~Lv~   97 (314)
                      .+-++++|..+++ +...+++-   +-..+..+.++.+|.+.+-.+...+...+--|+.. + +.+.++.  -++..|-+
T Consensus       161 ~~~vkqkaALclL~L~r~spDl---~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~--~avs~L~r  235 (938)
T KOG1077|consen  161 MDYVKQKAALCLLRLFRKSPDL---VNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLP--LAVSRLSR  235 (938)
T ss_pred             hHHHHHHHHHHHHHHHhcCccc---cChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHH--HHHHHHHH
Confidence            3556777777766 77776653   22345678888888776665555666666666653 2 2232221  11112222


Q ss_pred             Hhcc-------------CCHHHHHHHHHHHHHhcCCCC--CchhhhhcCCcHHHHHHhhccCCchHHH----HH-HHHHH
Q 021317           98 ILHS-------------GSVQGRVDAVTALHYLSTCKE--NSSPILDATAVPPLINLLKDCKKYSKFA----EK-ATALL  157 (314)
Q Consensus        98 lL~~-------------~~~~~~~~a~~~L~nLs~~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~----~~-a~~~L  157 (314)
                      ....             +.|=+....+++|.+.-.-++  .+..+.+  +++.++...+.+....++.    .+ .+--.
T Consensus       236 iv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na~naVLFea  313 (938)
T KOG1077|consen  236 IVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNE--VLERILNKAQEPPKSKKVQHSNAKNAVLFEA  313 (938)
T ss_pred             HHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHH--HHHHHHhccccCccccchHhhhhHHHHHHHH
Confidence            1111             245566667777766643222  3333322  3444444444221111111    11 11111


Q ss_pred             HHhcCC-hhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhh-cCCHHHH
Q 021317          158 EILSSS-EEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTV-EGTFEAQ  235 (314)
Q Consensus       158 ~~L~~~-~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~-~~~~~~~  235 (314)
                      -+|+.+ ++....+.   .++..|-.++.+....+|--|+..++.|+.....  .+++...  .+.++..++ ..|..++
T Consensus       314 I~l~~h~D~e~~ll~---~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s--~davK~h--~d~Ii~sLkterDvSir  386 (938)
T KOG1077|consen  314 ISLAIHLDSEPELLS---RAVNQLGQFLSHRETNIRYLALESMCKLASSEFS--IDAVKKH--QDTIINSLKTERDVSIR  386 (938)
T ss_pred             HHHHHHcCCcHHHHH---HHHHHHHHHhhcccccchhhhHHHHHHHHhccch--HHHHHHH--HHHHHHHhccccchHHH
Confidence            244444 33333333   2677778888777778888888888888776432  3344333  566666666 5677888


Q ss_pred             HHHHHHHHHhhcCCchhh
Q 021317          236 ERARTLLDLLRDTPQEKR  253 (314)
Q Consensus       236 ~~A~~~L~~l~~~~~~~~  253 (314)
                      +.|+.+|..+|+.++.+.
T Consensus       387 rravDLLY~mcD~~Nak~  404 (938)
T KOG1077|consen  387 RRAVDLLYAMCDVSNAKQ  404 (938)
T ss_pred             HHHHHHHHHHhchhhHHH
Confidence            888888888887665443

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=96.86  E-value=0.051  Score=51.99  Aligned_cols=147  Identities=15%  Similarity=0.156  Sum_probs=99.1

Q ss_pred             cHHHHHHhcCCCHHHHHHHHHHHHHhccCCC---ChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhh
Q 021317           51 IPPLVELLKFQNGTLRELAAAAILTLSAAAP---NKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPI  127 (314)
Q Consensus        51 v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~---~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i  127 (314)
                      |+..+.+|++..++++.+|+.....|+.--.   ....+..-|.+  |.+-|....+++.-..+.+++.+......+..-
T Consensus       606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mq  683 (975)
T COG5181         606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGEDYPEVLGSILKAICSIYSVHRFRSMQ  683 (975)
T ss_pred             HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcccHHHHHHHHHHHHHHhhhhcccccC
Confidence            5567788899999999999998888865211   11112222221  233344567888877777777776544332211


Q ss_pred             -hhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhh----hhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 021317          128 -LDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEG----RIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSL  202 (314)
Q Consensus       128 -~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~----~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L  202 (314)
                       --.|++|.|..+|++...  ++..+....++.+|...+.    |+.+-    +-=.|+.+|++.+.+++.+|...+..+
T Consensus       684 pPi~~ilP~ltPILrnkh~--Kv~~nti~lvg~I~~~~peyi~~rEWMR----IcfeLvd~Lks~nKeiRR~A~~tfG~I  757 (975)
T COG5181         684 PPISGILPSLTPILRNKHQ--KVVANTIALVGTICMNSPEYIGVREWMR----ICFELVDSLKSWNKEIRRNATETFGCI  757 (975)
T ss_pred             CchhhccccccHhhhhhhH--HHhhhHHHHHHHHHhcCcccCCHHHHHH----HHHHHHHHHHHhhHHHHHhhhhhhhhH
Confidence             124789999999998644  8888888888888776433    44443    333678888888899999999988888


Q ss_pred             hcc
Q 021317          203 CQS  205 (314)
Q Consensus       203 ~~~  205 (314)
                      +..
T Consensus       758 s~a  760 (975)
T COG5181         758 SRA  760 (975)
T ss_pred             Hhh
Confidence            753

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.85  E-value=0.089  Score=51.74  Aligned_cols=55  Identities=18%  Similarity=0.139  Sum_probs=31.1

Q ss_pred             ccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhcc
Q 021317           18 TYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSA   78 (314)
Q Consensus        18 ~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~   78 (314)
                      ++++--++-.|+.++......+--|      +..|-+-+++++.++-++..|+.+...+-.
T Consensus       117 ~s~nq~vVglAL~alg~i~s~Emar------dlapeVe~Ll~~~~~~irKKA~Lca~r~ir  171 (866)
T KOG1062|consen  117 NSSNQYVVGLALCALGNICSPEMAR------DLAPEVERLLQHRDPYIRKKAALCAVRFIR  171 (866)
T ss_pred             cCCCeeehHHHHHHhhccCCHHHhH------HhhHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence            3444445555555555333322222      233556667777778888877777776554

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.78  E-value=0.14  Score=47.25  Aligned_cols=232  Identities=12%  Similarity=0.003  Sum_probs=156.4

Q ss_pred             eeccccCCHHHHHHHHHHhH-hhcc-----Cchh----HHHHHhcCCcHHHHHHhcCCCHHH------HHHHHHHHHHhc
Q 021317           14 VFMETYFEGYARRLNLMGPL-WQLS-----KTRN----KVKIATAGAIPPLVELLKFQNGTL------RELAAAAILTLS   77 (314)
Q Consensus        14 v~~l~~~~~~~~~~a~~al~-l~~~-----~~~~----~~~l~~~g~v~~Lv~lL~~~~~~~------~~~a~~~L~~La   77 (314)
                      +.+|.-.|..+-...+.-+. ++..     +++.    -..+++.++++.|++-+..-+.++      ...+...+-|+.
T Consensus       131 L~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv  210 (536)
T KOG2734|consen  131 LELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTLAVVENLV  210 (536)
T ss_pred             HHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHH
Confidence            45677777777777777666 4432     2222    245567888999988775434333      345566777777


Q ss_pred             cC-CCChhHHhhcCcHHHHHHHhccC--CHHHHHHHHHHHHHhcCCC-CCchhhhhcCCcHHHHHHhhc----c---CCc
Q 021317           78 AA-APNKPAIAASGAAPLLVQILHSG--SVQGRVDAVTALHYLSTCK-ENSSPILDATAVPPLINLLKD----C---KKY  146 (314)
Q Consensus        78 ~~-~~~~~~i~~~g~l~~Lv~lL~~~--~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~lL~~----~---~~~  146 (314)
                      .. ++....+++.|.+.-|+.-+...  -..-+..|..+|.-+-.+. +++.......++..++.-+.-    +   .++
T Consensus       211 ~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E  290 (536)
T KOG2734|consen  211 EVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDE  290 (536)
T ss_pred             hccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCH
Confidence            65 46677777888777766644432  3456788888888888554 588888888889888877632    1   123


Q ss_pred             hHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcH-HHHHHHHHcCChHHHHH
Q 021317          147 SKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRD-KYRQLILKEGAIPGLLR  225 (314)
Q Consensus       147 ~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~-~~~~~i~~~g~v~~Lv~  225 (314)
                      .++.++-..+|+.+-..+.+|..+. ...+++...-+++. ....+..++.+|-....+.+. .++..+++.+|+..+..
T Consensus       291 ~EmmeNLFdcLCs~lm~~~nr~~Fl-~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~  368 (536)
T KOG2734|consen  291 EEMMENLFDCLCSLLMAPANRERFL-KGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFP  368 (536)
T ss_pred             HHHHHHHHHHHHHHhcChhhhhhhh-ccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHH
Confidence            4677788888888888899999999 56677766666665 445578899999888776532 67888999888888776


Q ss_pred             -hhhcC--------C-HHHHHHHHHHHHHhhc
Q 021317          226 -LTVEG--------T-FEAQERARTLLDLLRD  247 (314)
Q Consensus       226 -ll~~~--------~-~~~~~~A~~~L~~l~~  247 (314)
                       +++..        + ...-++-+.+|+.+-.
T Consensus       369 ~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~  400 (536)
T KOG2734|consen  369 LFMKTPLKRKKRKISADEHEEHVCSILASLLR  400 (536)
T ss_pred             HHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence             44222        2 3334555556655543

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=96.77  E-value=0.2  Score=50.41  Aligned_cols=241  Identities=13%  Similarity=0.152  Sum_probs=144.6

Q ss_pred             HHHhcCCcHHHHHHhcCC-----CHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhc----cCC----HHHHHHH
Q 021317           44 KIATAGAIPPLVELLKFQ-----NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILH----SGS----VQGRVDA  110 (314)
Q Consensus        44 ~l~~~g~v~~Lv~lL~~~-----~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~----~~~----~~~~~~a  110 (314)
                      .+.+.|++..+++++.+-     ........+..|...+....||..+.+.|+++.|+..|.    .+.    +.+-+..
T Consensus       112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L  191 (802)
T PF13764_consen  112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL  191 (802)
T ss_pred             HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence            445789999999999652     334555566677777778999999999999999998874    333    5666677


Q ss_pred             HHHHHHhcCCCCC---c--hhhhhc--------CCcHHHHHHhhccC--CchHHHHHHHHHHHHhcCChhhhhHHHhccC
Q 021317          111 VTALHYLSTCKEN---S--SPILDA--------TAVPPLINLLKDCK--KYSKFAEKATALLEILSSSEEGRIAITNSDG  175 (314)
Q Consensus       111 ~~~L~nLs~~~~~---~--~~i~~~--------g~i~~Lv~lL~~~~--~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g  175 (314)
                      +.++..|......   .  ......        .-+..+++.+.+..  .++.+....+++|-+|+.+.+.+.....+  
T Consensus       192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~--  269 (802)
T PF13764_consen  192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE--  269 (802)
T ss_pred             HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH--
Confidence            7666666532211   0  111111        12555666665532  23578888999999999887665544311  


Q ss_pred             CHHHHHHHhhcC---CHHHHHHHHHHHHHhhccC-----cHHHHHHHHHcCChHHHHHhhhcCCH--------HHH----
Q 021317          176 GILTLVETVEDG---SLVSTQHAVGALLSLCQSC-----RDKYRQLILKEGAIPGLLRLTVEGTF--------EAQ----  235 (314)
Q Consensus       176 ~v~~Lv~ll~~~---~~~~~~~A~~~L~~L~~~~-----~~~~~~~i~~~g~v~~Lv~ll~~~~~--------~~~----  235 (314)
                      .+...+++=.-+   ++.- ...+.+++.++..-     .+..|+.+++.|.++..++++...-|        +-+    
T Consensus       270 ~F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~  348 (802)
T PF13764_consen  270 HFKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLS  348 (802)
T ss_pred             HHHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhc
Confidence            233333211111   1111 23355555555421     24789999999999999998765433        222    


Q ss_pred             ----HHHHHHHHHhhcCCc--hhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q 021317          236 ----ERARTLLDLLRDTPQ--EKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQ  289 (314)
Q Consensus       236 ----~~A~~~L~~l~~~~~--~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~  289 (314)
                          ..+...|+-|+.+..  +..+....+ ++++.|. ++.++.+....|-.+|..+..
T Consensus       349 ~psLp~iL~lL~GLa~gh~~tQ~~~~~~~l-~~lH~LE-qvss~~~IGslAEnlLeal~~  406 (802)
T PF13764_consen  349 RPSLPYILRLLRGLARGHEPTQLLIAEQLL-PLLHRLE-QVSSEEHIGSLAENLLEALAE  406 (802)
T ss_pred             CCcHHHHHHHHHHHHhcCHHHHHHHHhhHH-HHHHHhh-cCCCccchHHHHHHHHHHHhc
Confidence                234566666776543  233444455 3556665 333345566666666666554

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=96.76  E-value=0.038  Score=52.11  Aligned_cols=165  Identities=16%  Similarity=0.119  Sum_probs=117.4

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCH----HHHHHHHHHHHHhcCCCCCchhh
Q 021317           52 PPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSV----QGRVDAVTALHYLSTCKENSSPI  127 (314)
Q Consensus        52 ~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~----~~~~~a~~~L~nLs~~~~~~~~i  127 (314)
                      ..+.+.+.+++...+..+...|..++.+......+....++..|.++..+++.    .....++.++..|-...-.....
T Consensus        86 ~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~~  165 (713)
T KOG2999|consen   86 KRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWES  165 (713)
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeeee
Confidence            46788889998888888999999999988888888889999999999998854    55566666666655433333333


Q ss_pred             hhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCc
Q 021317          128 LDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCR  207 (314)
Q Consensus       128 ~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~  207 (314)
                      +...++.....+..-...+..+...|+..|-++..+.......+.+.--+..|+.++...+..++..|...+-.+....+
T Consensus       166 ~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~a~  245 (713)
T KOG2999|consen  166 VSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRKAP  245 (713)
T ss_pred             cccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhhCC
Confidence            33334444444443322233556789999999888877555555477789999999999998998888888877766555


Q ss_pred             HHHHHHHHH
Q 021317          208 DKYRQLILK  216 (314)
Q Consensus       208 ~~~~~~i~~  216 (314)
                      ++-|..+.+
T Consensus       246 ~~~R~~~~~  254 (713)
T KOG2999|consen  246 DDKRFEMAK  254 (713)
T ss_pred             hHHHHHHHH
Confidence            554555544

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=96.73  E-value=0.0056  Score=50.81  Aligned_cols=111  Identities=11%  Similarity=0.038  Sum_probs=82.7

Q ss_pred             CCCHHHHHHHHHHHHHhccCCCChhHHhh----------------cCcHHHHHHHhcc------CCHHHHHHHHHHHHHh
Q 021317           60 FQNGTLRELAAAAILTLSAAAPNKPAIAA----------------SGAAPLLVQILHS------GSVQGRVDAVTALHYL  117 (314)
Q Consensus        60 ~~~~~~~~~a~~~L~~La~~~~~~~~i~~----------------~g~l~~Lv~lL~~------~~~~~~~~a~~~L~nL  117 (314)
                      +++...-..++..|.||+..+.....+.+                ...+..|+.++..      ....-....+.++.|+
T Consensus         6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl   85 (192)
T PF04063_consen    6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL   85 (192)
T ss_pred             CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence            34445566778899999988776664442                2367778887766      2334567888999999


Q ss_pred             cCCCCCchhhhhc--CC--cHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHh
Q 021317          118 STCKENSSPILDA--TA--VPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITN  172 (314)
Q Consensus       118 s~~~~~~~~i~~~--g~--i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~  172 (314)
                      +..++.|..+.+.  +.  +..|+..+++.+.  ..+..++++|.|+|-+.+....+..
T Consensus        86 S~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~--iRR~Gva~~IrNccFd~~~H~~LL~  142 (192)
T PF04063_consen   86 SQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSV--IRRGGVAGTIRNCCFDTDSHEWLLS  142 (192)
T ss_pred             cCCHHHHHHHhCchhhhhHHHHHHHHhccCcH--HHHHHHHHHHHHhhccHhHHHHhcC
Confidence            9999999999973  44  6777777777633  5567899999999999988888874

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=96.72  E-value=0.057  Score=46.57  Aligned_cols=220  Identities=16%  Similarity=0.129  Sum_probs=135.4

Q ss_pred             CCHHHHHHHHHHhH-hhccCchhHHHHH-hcCCcHHHHHHh-------cCCC--HH--H-HHHHHHHHHHhccCCCChhH
Q 021317           20 FEGYARRLNLMGPL-WQLSKTRNKVKIA-TAGAIPPLVELL-------KFQN--GT--L-RELAAAAILTLSAAAPNKPA   85 (314)
Q Consensus        20 ~~~~~~~~a~~al~-l~~~~~~~~~~l~-~~g~v~~Lv~lL-------~~~~--~~--~-~~~a~~~L~~La~~~~~~~~   85 (314)
                      -+++.|+.|+..|. .-...++-.-.+- ..|.+..|++=.       ..++  +.  - .-.|+..|..+|.+++.|..
T Consensus         7 ~~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~   86 (262)
T PF04078_consen    7 CNPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMP   86 (262)
T ss_dssp             SSHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHH
T ss_pred             cCcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHH
Confidence            46788999999888 4444444433343 457777776533       2221  21  1 22455566678899999999


Q ss_pred             HhhcCcHHHHHHHhccC-----CHHHHHHHHHHHHHhcCCC--CCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHH
Q 021317           86 IAASGAAPLLVQILHSG-----SVQGRVDAVTALHYLSTCK--ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLE  158 (314)
Q Consensus        86 i~~~g~l~~Lv~lL~~~-----~~~~~~~a~~~L~nLs~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~  158 (314)
                      +.++...-.|-..|+..     -+.+|-.++++++.|...+  +....+.+.+.+|..++.|+.|++  --+..|+-++.
T Consensus        87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~Gse--lSKtvAtfIlq  164 (262)
T PF04078_consen   87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSE--LSKTVATFILQ  164 (262)
T ss_dssp             HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-H--HHHHHHHHHHH
T ss_pred             HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccH--HHHHHHHHHHH
Confidence            99988766666666543     2567899999999999644  345567788999999999999865  33445777777


Q ss_pred             HhcCChhhhhHHHhccC-------CHHHHHHH-hhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHH--h--
Q 021317          159 ILSSSEEGRIAITNSDG-------GILTLVET-VEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLR--L--  226 (314)
Q Consensus       159 ~L~~~~~~~~~i~~~~g-------~v~~Lv~l-l~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~--l--  226 (314)
                      .+-.++.+-..+.+...       ++..++.. ..+.++.+.....++-.-|+.+.  ..|+++..  .+|..++  .  
T Consensus       165 KIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp--rar~aL~~--~LP~~Lrd~~f~  240 (262)
T PF04078_consen  165 KILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP--RAREALRQ--CLPDQLRDGTFS  240 (262)
T ss_dssp             HHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST--THHHHHHH--HS-GGGTSSTTT
T ss_pred             HHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH--HHHHHHHH--hCcHHHhcHHHH
Confidence            76666666444432222       22333332 24567888899999999999876  45777765  3333222  1  


Q ss_pred             -hhcCCHHHHHHHHHHHHHh
Q 021317          227 -TVEGTFEAQERARTLLDLL  245 (314)
Q Consensus       227 -l~~~~~~~~~~A~~~L~~l  245 (314)
                       +-.+|+..++.=..++.|+
T Consensus       241 ~~l~~D~~~k~~l~qLl~nl  260 (262)
T PF04078_consen  241 NILKDDPSTKRWLQQLLSNL  260 (262)
T ss_dssp             TGGCS-HHHHHHHHHHHHHT
T ss_pred             HHHhcCHHHHHHHHHHHHHh
Confidence             1124666666555566655

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.71  E-value=0.2  Score=49.42  Aligned_cols=263  Identities=12%  Similarity=0.110  Sum_probs=145.3

Q ss_pred             eccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC-CCChhHHhhcCcH
Q 021317           15 FMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA-APNKPAIAASGAA   92 (314)
Q Consensus        15 ~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~i~~~g~l   92 (314)
                      .+++..++.++++|+.|.. .....++--..     +++....+|.+.+..+...++..+..++.. ++.-....+  .+
T Consensus       149 ~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~-----f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~  221 (866)
T KOG1062|consen  149 RLLQHRDPYIRKKAALCAVRFIRKVPDLVEH-----FVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LV  221 (866)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHcCchHHHH-----hhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HH
Confidence            5678889999999999877 66666653322     233444555444444444444444444432 222222221  33


Q ss_pred             HHHHHHhcc---------------CCHHHHHHHHHHHHHhcCCCCC------------------chhhhh---cCCcHHH
Q 021317           93 PLLVQILHS---------------GSVQGRVDAVTALHYLSTCKEN------------------SSPILD---ATAVPPL  136 (314)
Q Consensus        93 ~~Lv~lL~~---------------~~~~~~~~a~~~L~nLs~~~~~------------------~~~i~~---~g~i~~L  136 (314)
                      +.++..|+.               ++|-++...+..|+-|-.++..                  -..+.+   ..++..+
T Consensus       222 ~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI  301 (866)
T KOG1062|consen  222 PSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTI  301 (866)
T ss_pred             HHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHH
Confidence            444444321               1344555555555555443322                  111221   1222333


Q ss_pred             HHHhhccCCchHHHHHHHHHHHHhcCChhh-hhHH---------HhccCCH----HHHHHHhhcCCHHHHHHHHHHHHHh
Q 021317          137 INLLKDCKKYSKFAEKATALLEILSSSEEG-RIAI---------TNSDGGI----LTLVETVEDGSLVSTQHAVGALLSL  202 (314)
Q Consensus       137 v~lL~~~~~~~~~~~~a~~~L~~L~~~~~~-~~~i---------~~~~g~v----~~Lv~ll~~~~~~~~~~A~~~L~~L  202 (314)
                      +.+.    ++..+++.|..+|..+-.++++ .+.+         -.+..++    ..++.+|++.+..++..|+..+..|
T Consensus       302 ~~I~----~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~l  377 (866)
T KOG1062|consen  302 MDIR----SNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYAL  377 (866)
T ss_pred             Hhcc----CCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence            2222    2336778888888876666544 2221         1123333    3678888888889999999999888


Q ss_pred             hccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc-CCchhhcchhhhHHHHHHHhhcCCCHHHHHHHHH
Q 021317          203 CQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRD-TPQEKRLSSSVLEKIVYDIAARVDGADKAAETAK  281 (314)
Q Consensus       203 ~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~-~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~  281 (314)
                      ...+  . .+.     .++.|+.++...++..+...+.-+..+++ ..+.+.-   .++.....+.   ...+-.++.+.
T Consensus       378 vn~~--N-v~~-----mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W---~idtml~Vl~---~aG~~V~~dv~  443 (866)
T KOG1062|consen  378 VNES--N-VRV-----MVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRW---HIDTMLKVLK---TAGDFVNDDVV  443 (866)
T ss_pred             hccc--c-HHH-----HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchh---HHHHHHHHHH---hcccccchhhH
Confidence            8654  2 333     35668888888888888877776666654 3333222   2333333343   23356677777


Q ss_pred             HHHHHHHHHHHHHhHHHHHHH
Q 021317          282 RLLQDMVQRSMELSMTRIQQR  302 (314)
Q Consensus       282 ~~L~~l~~~s~~~~~~~~~~~  302 (314)
                      ..+-.+...++.......++|
T Consensus       444 ~nll~LIa~~~~e~~~y~~~r  464 (866)
T KOG1062|consen  444 NNLLRLIANAFQELHEYAVLR  464 (866)
T ss_pred             HHHHHHHhcCCcchhhHHHHH
Confidence            777777776755555555544

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=96.70  E-value=0.12  Score=42.39  Aligned_cols=91  Identities=14%  Similarity=0.088  Sum_probs=71.9

Q ss_pred             CHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcH-HHHHHH
Q 021317           21 EGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAA-PLLVQI   98 (314)
Q Consensus        21 ~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l-~~Lv~l   98 (314)
                      |+.+|..++.++. ++...+..    ++ ..+|.+...|.++++.+|..|+.+|..|...+-    +.-.|-+ ..++.+
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~----ve-~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~----ik~k~~l~~~~l~~   71 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNL----VE-PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM----IKVKGQLFSRILKL   71 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHH----HH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc----eeehhhhhHHHHHH
Confidence            5778888999888 77666543    22 347889999999999999999999999876532    2222333 788889


Q ss_pred             hccCCHHHHHHHHHHHHHhcCC
Q 021317           99 LHSGSVQGRVDAVTALHYLSTC  120 (314)
Q Consensus        99 L~~~~~~~~~~a~~~L~nLs~~  120 (314)
                      +.+++++++..|..++..+...
T Consensus        72 l~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   72 LVDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999865

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.66  E-value=0.03  Score=54.91  Aligned_cols=209  Identities=15%  Similarity=0.061  Sum_probs=142.9

Q ss_pred             hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHH-HhccCCCChhHHhhcCcHHHHHHHhccCC-HHHHHHHH
Q 021317           34 WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAIL-TLSAAAPNKPAIAASGAAPLLVQILHSGS-VQGRVDAV  111 (314)
Q Consensus        34 l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~-~La~~~~~~~~i~~~g~l~~Lv~lL~~~~-~~~~~~a~  111 (314)
                      +++....-+...++.|+...|+.+.....+..+.....+|. .++.. ..    .....++++.+.++... ..-...++
T Consensus       489 ~aA~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~-~~----~~~~v~~~~~s~~~~d~~~~en~E~L  563 (748)
T KOG4151|consen  489 LAAKEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFP-GE----RSYEVVKPLDSALHNDEKGLENFEAL  563 (748)
T ss_pred             HhhhhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCC-CC----chhhhhhhhcchhhhhHHHHHHHHHH
Confidence            33444455566778999999999998888888888888887 22221 11    12345666666665442 22346778


Q ss_pred             HHHHHhcC-CCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhc-cCCHHHHHHHhhcCCH
Q 021317          112 TALHYLST-CKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNS-DGGILTLVETVEDGSL  189 (314)
Q Consensus       112 ~~L~nLs~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~-~g~v~~Lv~ll~~~~~  189 (314)
                      .++.||+. ++..|..+.+.-.++.+-.++.+.++  ..+..++..+.||..++......+.+ ...++.....+.....
T Consensus       564 ~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~--~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E  641 (748)
T KOG4151|consen  564 EALTNLASISESDRQKILKEKALGKIEELMTEENP--ALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADE  641 (748)
T ss_pred             HHhhcccCcchhhHHHHHHHhcchhhHHHhhcccH--HHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhh
Confidence            89999994 55677788887677766666655443  67888999999999988765554433 5667777777766666


Q ss_pred             HHHHHHHHHHHHhhccCcHHHHHHHHH-cCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCc
Q 021317          190 VSTQHAVGALLSLCQSCRDKYRQLILK-EGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQ  250 (314)
Q Consensus       190 ~~~~~A~~~L~~L~~~~~~~~~~~i~~-~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~  250 (314)
                      .....+++++..++.... .....+.+ ..+...++.++.++++.+|........|+.+...
T Consensus       642 ~~~lA~a~a~a~I~sv~~-n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~  702 (748)
T KOG4151|consen  642 KFELAGAGALAAITSVVE-NHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALF  702 (748)
T ss_pred             HHhhhccccccchhhcch-hhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHH
Confidence            667777777776665543 23332333 5678888999999999999999887777655443

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=96.66  E-value=0.056  Score=52.80  Aligned_cols=144  Identities=13%  Similarity=0.059  Sum_probs=96.0

Q ss_pred             eeccccCCHHHHHHHHHHhH-hh---ccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCC-ChhHHhh
Q 021317           14 VFMETYFEGYARRLNLMGPL-WQ---LSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAA   88 (314)
Q Consensus        14 v~~l~~~~~~~~~~a~~al~-l~---~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~-~~~~i~~   88 (314)
                      ...|.+..+.++++|+..+. ++   ....+ -..+...|+  .|.+-|....+++.-..+.+++.+..... .+..---
T Consensus       805 L~rLnnksa~vRqqaadlis~la~Vlktc~e-e~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi  881 (1172)
T KOG0213|consen  805 LWRLNNKSAKVRQQAADLISSLAKVLKTCGE-EKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPI  881 (1172)
T ss_pred             HHHhcCCChhHHHHHHHHHHHHHHHHHhccH-HHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCCh
Confidence            35678889999999988765 22   22211 134455564  36777877788887776666666654321 1111123


Q ss_pred             cCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhh-cCCcHHHHHHhhccCCchHHHHHHHHHHHHhcC
Q 021317           89 SGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILD-ATAVPPLINLLKDCKKYSKFAEKATALLEILSS  162 (314)
Q Consensus        89 ~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~  162 (314)
                      .+.+|.|..+|++....++++++..++.++....-.....+ ..+--.|+++|++.+.  .++.+|...+..++.
T Consensus       882 ~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK--~iRRaa~nTfG~Iak  954 (1172)
T KOG0213|consen  882 KDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKK--EIRRAAVNTFGYIAK  954 (1172)
T ss_pred             hhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhhhHHHH
Confidence            68899999999999999999999999999965443333333 1233457788888655  677788877776654

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.65  E-value=0.07  Score=51.45  Aligned_cols=104  Identities=20%  Similarity=0.210  Sum_probs=74.1

Q ss_pred             ccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchh
Q 021317          173 SDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEK  252 (314)
Q Consensus       173 ~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~  252 (314)
                      .+|+-..++.-|.+.--++|+.|...|+.|+...|. ...     -.+.-|+.++.++...++..|..+|+.++.+-   
T Consensus       371 ~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~-FA~-----~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l---  441 (823)
T KOG2259|consen  371 PSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG-FAV-----RALDFLVDMFNDEIEVVRLKAIFALTMISVHL---  441 (823)
T ss_pred             cccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC-cHH-----HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh---
Confidence            466667777777777788999999999999987663 111     15677888999999999999999999999874   


Q ss_pred             hcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 021317          253 RLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMV  288 (314)
Q Consensus       253 ~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~  288 (314)
                      .+....++.++..|.   |.+.++++....+|++..
T Consensus       442 ~i~eeql~~il~~L~---D~s~dvRe~l~elL~~~~  474 (823)
T KOG2259|consen  442 AIREEQLRQILESLE---DRSVDVREALRELLKNAR  474 (823)
T ss_pred             eecHHHHHHHHHHHH---hcCHHHHHHHHHHHHhcC
Confidence            233334444433333   555666776666666543

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=96.54  E-value=0.12  Score=49.21  Aligned_cols=261  Identities=13%  Similarity=0.061  Sum_probs=147.1

Q ss_pred             CHHHHHHHHHHhHhhccCchhHHHHHhc----CCcHHHHHHhcCCCHHHHHHHHHHHHHhccC-CCChhHHhhcCcHHHH
Q 021317           21 EGYARRLNLMGPLWQLSKTRNKVKIATA----GAIPPLVELLKFQNGTLRELAAAAILTLSAA-APNKPAIAASGAAPLL   95 (314)
Q Consensus        21 ~~~~~~~a~~al~l~~~~~~~~~~l~~~----g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~i~~~g~l~~L   95 (314)
                      +..+|..|+.+|.....  .-+..+...    -..+..++.-+.++.+++..|..+|..+-.- -..-..+.+.-....+
T Consensus       191 ~~avRLaaL~aL~dsl~--fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt  268 (858)
T COG5215         191 TSAVRLAALKALMDSLM--FVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALT  268 (858)
T ss_pred             hHHHHHHHHHHHHHHHH--HHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566677777652111  111222211    2233445555677899999999999987542 2222233444445566


Q ss_pred             HHHhccCCHHHHHHHHHHHHHhcCC--------------CC-Cchhhh--hcCCcHHHHHHhhc------cCCchHHHHH
Q 021317           96 VQILHSGSVQGRVDAVTALHYLSTC--------------KE-NSSPIL--DATAVPPLINLLKD------CKKYSKFAEK  152 (314)
Q Consensus        96 v~lL~~~~~~~~~~a~~~L~nLs~~--------------~~-~~~~i~--~~g~i~~Lv~lL~~------~~~~~~~~~~  152 (314)
                      .+.+++++.++...+...-..++..              |. |.....  -..++|.|+.+|..      +++| .....
T Consensus       269 ~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdW-n~sma  347 (858)
T COG5215         269 GRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDW-NPSMA  347 (858)
T ss_pred             HHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCcccccc-chhhh
Confidence            6778899999888887655455431              11 111111  13578999999965      2223 44556


Q ss_pred             HHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCH
Q 021317          153 ATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTF  232 (314)
Q Consensus       153 a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~  232 (314)
                      |.++|.-.+....+  .++ +. ....+-.-+++++-.-++.|+.++..+-.+...+.+..++ ..++|.+...+.+..-
T Consensus       348 A~sCLqlfaq~~gd--~i~-~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V-~qalp~i~n~m~D~~l  422 (858)
T COG5215         348 ASSCLQLFAQLKGD--KIM-RP-VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIV-PQALPGIENEMSDSCL  422 (858)
T ss_pred             HHHHHHHHHHHhhh--HhH-HH-HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhH-HhhhHHHHHhccccee
Confidence            66666544332211  122 11 1222222345556666889999999987765444444444 4678888888888888


Q ss_pred             HHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHH
Q 021317          233 EAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARV-DGADKAAETAKRLLQDMVQR  290 (314)
Q Consensus       233 ~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~-~~~~~~~~~A~~~L~~l~~~  290 (314)
                      .+++.++|++..++++-..-.-..|-+.+.+....... |. ++..-.-.+..-+|+.|
T Consensus       423 ~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~-p~~~~ncsw~~~nlv~h  480 (858)
T COG5215         423 WVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDC-PFRSINCSWRKENLVDH  480 (858)
T ss_pred             ehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhcc-chHHhhhHHHHHhHHHh
Confidence            99999999999999877542222333333333333222 33 44444444444555544

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=96.46  E-value=0.44  Score=41.14  Aligned_cols=170  Identities=22%  Similarity=0.220  Sum_probs=98.8

Q ss_pred             HHhcCCcHHHHHHhcCC--CHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC
Q 021317           45 IATAGAIPPLVELLKFQ--NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKE  122 (314)
Q Consensus        45 l~~~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~  122 (314)
                      +.....+|.|+..|...  .+-+|..|..+|.++.          ..+.++.+-+..+++...+++-+..+|..+-..+.
T Consensus        63 ~~~~~Av~~l~~vl~desq~pmvRhEAaealga~~----------~~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~  132 (289)
T KOG0567|consen   63 MQDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG----------DPESLEILTKYIKDPCKEVRETCELAIKRLEWKDI  132 (289)
T ss_pred             hccchhhHHHHHHhcccccchHHHHHHHHHHHhhc----------chhhHHHHHHHhcCCccccchHHHHHHHHHHHhhc
Confidence            34456788999988654  5667888999998883          34555566666667777788778778877754221


Q ss_pred             C-----chhhh--h------cCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCH
Q 021317          123 N-----SSPIL--D------ATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSL  189 (314)
Q Consensus       123 ~-----~~~i~--~------~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~  189 (314)
                      .     .....  +      .+-+..|-..|.+.+...=-+..++-.|.|+..           ...|..|+.-+..++.
T Consensus       133 ~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~-----------EeaI~al~~~l~~~Sa  201 (289)
T KOG0567|consen  133 IDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT-----------EEAINALIDGLADDSA  201 (289)
T ss_pred             cccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc-----------HHHHHHHHHhcccchH
Confidence            1     11111  1      111333333333322110012234444444322           2235566666666777


Q ss_pred             HHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhc--CCHHHHHHHHHHHHHhhc
Q 021317          190 VSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE--GTFEAQERARTLLDLLRD  247 (314)
Q Consensus       190 ~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~--~~~~~~~~A~~~L~~l~~  247 (314)
                      ..|..++.+|..|-+..            .++.|.+.+.+  ..|.+|..|+.+|..+++
T Consensus       202 lfrhEvAfVfGQl~s~~------------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~  249 (289)
T KOG0567|consen  202 LFRHEVAFVFGQLQSPA------------AIPSLIKVLLDETEHPMVRHEAAEALGAIAD  249 (289)
T ss_pred             HHHHHHHHHHhhccchh------------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcC
Confidence            77888888877776331            56777775554  457788788777777654

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=96.44  E-value=0.57  Score=42.51  Aligned_cols=204  Identities=15%  Similarity=0.095  Sum_probs=141.0

Q ss_pred             HHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC-CCCch-hhhh--cCCcHHHHHHhhccCCchHHHHHHHHHHHHh
Q 021317           85 AIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC-KENSS-PILD--ATAVPPLINLLKDCKKYSKFAEKATALLEIL  160 (314)
Q Consensus        85 ~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~-~i~~--~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L  160 (314)
                      .+...+.+..|+..|..-+-+.+..+..+..++... .+++. ..++  ..-.|.++..|-.+.+.+++.-.+..+|...
T Consensus        71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec  150 (335)
T PF08569_consen   71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLREC  150 (335)
T ss_dssp             HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHH
Confidence            346679999999999999999999999999999854 34443 2333  1232444454544444556777888999999


Q ss_pred             cCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHc---CChHHHHHhhhcCCHHHHHH
Q 021317          161 SSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKE---GAIPGLLRLTVEGTFEAQER  237 (314)
Q Consensus       161 ~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~---g~v~~Lv~ll~~~~~~~~~~  237 (314)
                      ..++...+.+. +...+..+.+.+..++=++...|..++..+-..+. .........   ..+.....++.+++--+++.
T Consensus       151 ~k~e~l~~~iL-~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk-~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrq  228 (335)
T PF08569_consen  151 IKHESLAKIIL-YSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHK-KLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQ  228 (335)
T ss_dssp             TTSHHHHHHHH-TSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSH-HHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHH
T ss_pred             HhhHHHHHHHh-CcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHHHHccCCCeEeehh
Confidence            99988888888 68899999999999999999999999988655543 444555443   46677778999999999999


Q ss_pred             HHHHHHHhhcCCch-h-hcchhhh-HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Q 021317          238 ARTLLDLLRDTPQE-K-RLSSSVL-EKIVYDIAARVDGADKAAETAKRLLQDMVQR  290 (314)
Q Consensus       238 A~~~L~~l~~~~~~-~-~~~~~~~-~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~  290 (314)
                      +..+|..+--.+.. . +.....- +.+-..|....+.+...+-.|=-+.+-+++.
T Consensus       229 slkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN  284 (335)
T PF08569_consen  229 SLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN  284 (335)
T ss_dssp             HHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred             hHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence            99999998754432 2 2222221 2222222223577788999999999999973

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=96.44  E-value=0.13  Score=42.33  Aligned_cols=109  Identities=16%  Similarity=0.140  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhh
Q 021317          148 KFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLT  227 (314)
Q Consensus       148 ~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll  227 (314)
                      .++.+++.+++-|+...++   ++  ...++.+...|.++++.+|..|+.+|.+|...+.-+.+     ...+..++..+
T Consensus         3 ~vR~n~i~~l~DL~~r~~~---~v--e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k-----~~l~~~~l~~l   72 (178)
T PF12717_consen    3 SVRNNAIIALGDLCIRYPN---LV--EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK-----GQLFSRILKLL   72 (178)
T ss_pred             HHHHHHHHHHHHHHHhCcH---HH--HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh-----hhhhHHHHHHH
Confidence            5677788888777765432   22  23678899999999999999999999999865422212     22347777888


Q ss_pred             hcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHh
Q 021317          228 VEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIA  267 (314)
Q Consensus       228 ~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~  267 (314)
                      .+.+++++..|...+..+........+...+.+ ++..+.
T Consensus        73 ~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e-~i~~l~  111 (178)
T PF12717_consen   73 VDENPEIRSLARSFFSELLKKRNPNIIYNNFPE-LISSLN  111 (178)
T ss_pred             cCCCHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHHh
Confidence            999999999999999999876333333333333 444554

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.41  E-value=0.46  Score=46.91  Aligned_cols=252  Identities=15%  Similarity=0.141  Sum_probs=130.6

Q ss_pred             cccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhH---------Hh
Q 021317           17 ETYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPA---------IA   87 (314)
Q Consensus        17 l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~---------i~   87 (314)
                      +.+..+.+.-.|.+++..+..  .+-+.+..  .+..|--+++++.+.+|..|.++|..+|.....+..         |-
T Consensus       254 l~~K~emV~~EaArai~~l~~--~~~r~l~p--avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lIt  329 (865)
T KOG1078|consen  254 LRHKSEMVIYEAARAIVSLPN--TNSRELAP--AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLIT  329 (865)
T ss_pred             HhchhHHHHHHHHHHHhhccc--cCHhhcch--HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhc
Confidence            455677888888888873332  11122222  677888889999999999999999999984322211         11


Q ss_pred             hcC---cHHHHHHHhccCCHHHHHHHHHHHHHhcC--CCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcC
Q 021317           88 ASG---AAPLLVQILHSGSVQGRVDAVTALHYLST--CKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSS  162 (314)
Q Consensus        88 ~~g---~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~--~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~  162 (314)
                      +.+   .-.++..+|+.+.......-..-+.+...  +++.+..+++  ++..|....-      .-...-+..|.++-.
T Consensus       330 d~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvd--ai~sLc~~fp------~k~~~~m~FL~~~Lr  401 (865)
T KOG1078|consen  330 DSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVD--AIRSLCLKFP------RKHTVMMNFLSNMLR  401 (865)
T ss_pred             ccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHH--HHHHHHhhcc------HHHHHHHHHHHHHHH
Confidence            111   33455666777766555555555555542  3444444433  2333322211      111223333333322


Q ss_pred             C---hhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHH-------HHHc--------CChHHHH
Q 021317          163 S---EEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQL-------ILKE--------GAIPGLL  224 (314)
Q Consensus       163 ~---~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~-------i~~~--------g~v~~Lv  224 (314)
                      .   -+.++.++      +.++..+.. .+.-++.++.-|+..-.++  +..+.       +..+        ..+..+.
T Consensus       402 ~eGg~e~K~aiv------d~Ii~iie~-~pdsKe~~L~~LCefIEDc--e~~~i~~rILhlLG~EgP~a~~Pskyir~iy  472 (865)
T KOG1078|consen  402 EEGGFEFKRAIV------DAIIDIIEE-NPDSKERGLEHLCEFIEDC--EFTQIAVRILHLLGKEGPKAPNPSKYIRFIY  472 (865)
T ss_pred             hccCchHHHHHH------HHHHHHHHh-CcchhhHHHHHHHHHHHhc--cchHHHHHHHHHHhccCCCCCCcchhhHHHh
Confidence            2   23333333      345555543 2333455554444433222  11111       1111        2333344


Q ss_pred             HhhhcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHHHHHHh
Q 021317          225 RLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAAR-VDGADKAAETAKRLLQDMVQRSMELS  295 (314)
Q Consensus       225 ~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~-~~~~~~~~~~A~~~L~~l~~~s~~~~  295 (314)
                      ...--.+..++-.|+.+|.++.....      +..+.+...|... .|.++..+++|.-.|.++.....+.+
T Consensus       473 NRviLEn~ivRaaAv~alaKfg~~~~------~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~~~~l~  538 (865)
T KOG1078|consen  473 NRVILENAIVRAAAVSALAKFGAQDV------VLLPSILVLLKRCLNDSDDEVRDRATFYLKNLEEKDDVLN  538 (865)
T ss_pred             hhhhhhhhhhHHHHHHHHHHHhcCCC------CccccHHHHHHHHhcCchHHHHHHHHHHHHHhhhhhhhhc
Confidence            43334677888888889999873222      2222222222211 47778899999999999885443333

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=96.39  E-value=0.34  Score=46.65  Aligned_cols=270  Identities=11%  Similarity=0.030  Sum_probs=150.1

Q ss_pred             eccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHh-hcCcH
Q 021317           15 FMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIA-ASGAA   92 (314)
Q Consensus        15 ~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~-~~g~l   92 (314)
                      +.|....+++.-..+.|+. ..+-..-..-.=--.|.+|.|...|++.+..+..+....++.++.+........ +-..-
T Consensus       653 E~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIc  732 (975)
T COG5181         653 ENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRIC  732 (975)
T ss_pred             HhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHH
Confidence            4455666777666666665 332221111111136889999999999999999999999999988643322111 12234


Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHh
Q 021317           93 PLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITN  172 (314)
Q Consensus        93 ~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~  172 (314)
                      --|+..|.+.+.+.+.+|...++.++..-      .-..++..|++-|+..    +.+...++.+. +       ..+..
T Consensus       733 feLvd~Lks~nKeiRR~A~~tfG~Is~ai------GPqdvL~~LlnnLkvq----eRq~Rvctsva-I-------~iVae  794 (975)
T COG5181         733 FELVDSLKSWNKEIRRNATETFGCISRAI------GPQDVLDILLNNLKVQ----ERQQRVCTSVA-I-------SIVAE  794 (975)
T ss_pred             HHHHHHHHHhhHHHHHhhhhhhhhHHhhc------CHHHHHHHHHhcchHH----HHHhhhhhhhh-h-------hhhHh
Confidence            46788899999999999999888776431      1122333444444332    22222222221 0       11111


Q ss_pred             ccCCHHHHHHHhh---cCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCC
Q 021317          173 SDGGILTLVETVE---DGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP  249 (314)
Q Consensus       173 ~~g~v~~Lv~ll~---~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~  249 (314)
                      ..|-...|-.+|.   +.+..+|.-.+.+++.+-..-.+..++.+-  -..|.|-..+-+.|+.-++-|..+++.|+-++
T Consensus       795 ~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy--~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc  872 (975)
T COG5181         795 YCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVY--SITPLLEDALTDRDPVHRQTAMNVIRHLVLNC  872 (975)
T ss_pred             hcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHH--HhhHHHHhhhcccchHHHHHHHHHHHHHhcCC
Confidence            3455555555554   355777777777777766543222222222  13344444777889999999999999998766


Q ss_pred             chhhcchhhhH--HHH-HHHhhcCCCHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHhhhcCCC
Q 021317          250 QEKRLSSSVLE--KIV-YDIAARVDGADKAAETAKRLLQDMVQR-SMELSMTRIQQRAASSAPS  309 (314)
Q Consensus       250 ~~~~~~~~~~~--~lv-~~l~~~~~~~~~~~~~A~~~L~~l~~~-s~~~~~~~~~~~~~~~~~~  309 (314)
                      .....+..++.  .++ +.+.   +.++.+...-...+..++.. ++..-|++++  +|+=||+
T Consensus       873 ~gtg~eda~IHLlNllwpNIl---e~sPhvi~~~~Eg~e~~~~~lg~g~~m~Yv~--qGLFHPs  931 (975)
T COG5181         873 PGTGDEDAAIHLLNLLWPNIL---EPSPHVIQSFDEGMESFATVLGSGAMMKYVQ--QGLFHPS  931 (975)
T ss_pred             CCcccHHHHHHHHHHhhhhcc---CCCcHHHHHHHHHHHHHHHHhccHHHHHHHH--HhccCch
Confidence            54322222222  121 2222   44466554444444444321 3445555533  3555555

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.39  E-value=1  Score=44.65  Aligned_cols=146  Identities=10%  Similarity=0.039  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccC-----------------cH--
Q 021317          148 KFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSC-----------------RD--  208 (314)
Q Consensus       148 ~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~-----------------~~--  208 (314)
                      .+.-+++.+.+.++.-.+.       .+++..|+++|.+. ..++...+..+.-++-..                 +.  
T Consensus       302 sVVmA~aql~y~lAP~~~~-------~~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~v  373 (968)
T KOG1060|consen  302 SVVMAVAQLFYHLAPKNQV-------TKIAKALVRLLRSN-REVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQV  373 (968)
T ss_pred             HHHHHHHhHHHhhCCHHHH-------HHHHHHHHHHHhcC-CcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHH
Confidence            5667788888888765422       23566888877653 333444444444433211                 10  


Q ss_pred             -HHHH----HHHHcCCh----HHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhcCCCHHHHHHH
Q 021317          209 -KYRQ----LILKEGAI----PGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAET  279 (314)
Q Consensus       209 -~~~~----~i~~~g~v----~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~  279 (314)
                       ..+-    .+..++-+    +-+..++++.+......|+.++..|+....  -+....+.+||..|.++   ++.+-..
T Consensus       374 k~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~--sv~~tCL~gLv~Llssh---de~Vv~e  448 (968)
T KOG1060|consen  374 KILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIG--SVTDTCLNGLVQLLSSH---DELVVAE  448 (968)
T ss_pred             HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhC--chhhHHHHHHHHHHhcc---cchhHHH
Confidence             0000    11122223    333345666666555566667777665332  35567788888777743   4567789


Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhhhc
Q 021317          280 AKRLLQDMVQRSMELSMTRIQQRAASS  306 (314)
Q Consensus       280 A~~~L~~l~~~s~~~~~~~~~~~~~~~  306 (314)
                      |...+++|.+..+-+.-+.+.+=|.+=
T Consensus       449 aV~vIk~Llq~~p~~h~~ii~~La~ll  475 (968)
T KOG1060|consen  449 AVVVIKRLLQKDPAEHLEILFQLARLL  475 (968)
T ss_pred             HHHHHHHHHhhChHHHHHHHHHHHHHh
Confidence            999999999888877766666655543

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=96.37  E-value=0.029  Score=41.15  Aligned_cols=66  Identities=21%  Similarity=0.234  Sum_probs=52.9

Q ss_pred             CCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHH--cCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 021317          175 GGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK--EGAIPGLLRLTVEGTFEAQERARTLLDLL  245 (314)
Q Consensus       175 g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~--~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l  245 (314)
                      -.++.++..+.+.+..+|..|+.+|.|++...    +..+..  ......|.+++.+.++.+|..|. .|-++
T Consensus        27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~----~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~-~Ld~l   94 (97)
T PF12755_consen   27 EILPPVLKCFDDQDSRVRYYACEALYNISKVA----RGEILPYFNEIFDALCKLSADPDENVRSAAE-LLDRL   94 (97)
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHcCCchhHHHHHH-HHHHH
Confidence            47889999999999999999999999999764    344443  56888899999999999997774 44443

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.37  E-value=0.5  Score=48.65  Aligned_cols=227  Identities=12%  Similarity=0.099  Sum_probs=128.7

Q ss_pred             eccccCCHHHHHHHHHHhHhhccCchhHHHHHh--cCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCC--ChhHHhhcC
Q 021317           15 FMETYFEGYARRLNLMGPLWQLSKTRNKVKIAT--AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP--NKPAIAASG   90 (314)
Q Consensus        15 ~~l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~--~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~--~~~~i~~~g   90 (314)
                      ...++.++.+|.++-+.|..+...+.......+  ......|.+-+++.....+..++.+|..|-....  ....+  ..
T Consensus       661 ~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i--~k  738 (1176)
T KOG1248|consen  661 EFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI--PK  738 (1176)
T ss_pred             HhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH--HH
Confidence            345666899999999988843333333332221  1122333444444455566666677766654322  22222  33


Q ss_pred             cHHHHHHHhccCCHHHHHHHHHHHHHhcC----CCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhh
Q 021317           91 AAPLLVQILHSGSVQGRVDAVTALHYLST----CKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEG  166 (314)
Q Consensus        91 ~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~----~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~  166 (314)
                      .|+-++-.+++.+...+..+..+|..+..    .++..+.  ....+...+..+..+-........+.. |..+..--..
T Consensus       739 ~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isagl~gd~~~~~as~-Ivai~~il~e  815 (1176)
T KOG1248|consen  739 LIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAGLVGDSTRVVASD-IVAITHILQE  815 (1176)
T ss_pred             HHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhhhcccHHHHHHHH-HHHHHHHHHH
Confidence            45555555677788889999998888873    1111111  112566666666655211121222222 2222211111


Q ss_pred             hhHHHh---ccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHH
Q 021317          167 RIAITN---SDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLD  243 (314)
Q Consensus       167 ~~~i~~---~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~  243 (314)
                      ...+.+   -.+.++.+..+|.++++.++..|.+.+..++..-|+..- .--..-.++.+..++++....++.....+|.
T Consensus       816 ~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l-~~~~~~LL~sll~ls~d~k~~~r~Kvr~Lle  894 (1176)
T KOG1248|consen  816 FKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECL-SPHLEELLPSLLALSHDHKIKVRKKVRLLLE  894 (1176)
T ss_pred             HhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHH-hhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            112220   134555666677788999999999999999987763222 2122346888888888888888888888888


Q ss_pred             Hhhc
Q 021317          244 LLRD  247 (314)
Q Consensus       244 ~l~~  247 (314)
                      .|.+
T Consensus       895 kLir  898 (1176)
T KOG1248|consen  895 KLIR  898 (1176)
T ss_pred             HHHH
Confidence            8764

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=96.29  E-value=0.18  Score=44.73  Aligned_cols=225  Identities=9%  Similarity=-0.027  Sum_probs=144.4

Q ss_pred             CHHHHHHHHHHhHhhccCchhHHHHH-hcCCcHHHHHHhcCC--CHHHHHHHHHHHHHhccCCCChhHHhh-cCcHHHHH
Q 021317           21 EGYARRLNLMGPLWQLSKTRNKVKIA-TAGAIPPLVELLKFQ--NGTLRELAAAAILTLSAAAPNKPAIAA-SGAAPLLV   96 (314)
Q Consensus        21 ~~~~~~~a~~al~l~~~~~~~~~~l~-~~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~La~~~~~~~~i~~-~g~l~~Lv   96 (314)
                      ++-.+-.|++++......++.|..+- +...-..+++.+++.  +.+++-+.+-+++-|+.++.....|-+ -.-+.-++
T Consensus       162 ~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dli  241 (432)
T COG5231         162 DFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDLI  241 (432)
T ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            45567777788885556677766544 444456778888753  567888899999999988776644432 24566667


Q ss_pred             HHhccC-CHHHHHHHHHHHHHhcC-CC-CCchhhhhcCCcHHHHHHhhcc-CCchHHHHH---HHHHHH----HhcCCh-
Q 021317           97 QILHSG-SVQGRVDAVTALHYLST-CK-ENSSPILDATAVPPLINLLKDC-KKYSKFAEK---ATALLE----ILSSSE-  164 (314)
Q Consensus        97 ~lL~~~-~~~~~~~a~~~L~nLs~-~~-~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~~~---a~~~L~----~L~~~~-  164 (314)
                      .+.+.. .+.+..-+++++.|++. .+ .....+.-.|-+.+-+++|... ..+++++..   -...|-    .|+..+ 
T Consensus       242 ~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~  321 (432)
T COG5231         242 AIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDN  321 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence            776654 56778889999999986 22 2223333355555666666542 233333211   111111    112111 


Q ss_pred             -----------------------hhhhHHH-hccCCHHHHHHHhhcCCHH-HHHHHHHHHHHhhccCcHHHHHHHHHcCC
Q 021317          165 -----------------------EGRIAIT-NSDGGILTLVETVEDGSLV-STQHAVGALLSLCQSCRDKYRQLILKEGA  219 (314)
Q Consensus       165 -----------------------~~~~~i~-~~~g~v~~Lv~ll~~~~~~-~~~~A~~~L~~L~~~~~~~~~~~i~~~g~  219 (314)
                                             +|-..+. +.-..+..|..+++...+. ....|+.-+..+....| +.+..+..-|+
T Consensus       322 Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~P-E~~~vl~Kyg~  400 (432)
T COG5231         322 YLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASP-EINAVLSKYGV  400 (432)
T ss_pred             HHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCc-hHHHHHHHhhh
Confidence                                   1222222 1224577888888876654 44567777888877766 67888888999


Q ss_pred             hHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 021317          220 IPGLLRLTVEGTFEAQERARTLLDLLR  246 (314)
Q Consensus       220 v~~Lv~ll~~~~~~~~~~A~~~L~~l~  246 (314)
                      =+.++.++.+++++++-.|..++..+-
T Consensus       401 k~~im~L~nh~d~~VkfeAl~a~q~~i  427 (432)
T COG5231         401 KEIIMNLINHDDDDVKFEALQALQTCI  427 (432)
T ss_pred             HHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence            999999999999999999998887663

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=96.18  E-value=0.037  Score=40.59  Aligned_cols=93  Identities=12%  Similarity=0.167  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhc-C
Q 021317          192 TQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAAR-V  270 (314)
Q Consensus       192 ~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~-~  270 (314)
                      |.-++.+|...+-.-+....+.+  .-.+++++..+.+.++++|..|+.+|.++++...+..+.  ..+.+...|... .
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l--~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~--~f~~IF~~L~kl~~   78 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYL--DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILP--YFNEIFDALCKLSA   78 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHH--HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHc
Confidence            34566666666554432222222  347889999999999999999999999999877654433  222233333322 2


Q ss_pred             CCHHHHHHHHHHHHHHHHH
Q 021317          271 DGADKAAETAKRLLQDMVQ  289 (314)
Q Consensus       271 ~~~~~~~~~A~~~L~~l~~  289 (314)
                      |.+++++. ++++|-++.|
T Consensus        79 D~d~~Vr~-~a~~Ld~llk   96 (97)
T PF12755_consen   79 DPDENVRS-AAELLDRLLK   96 (97)
T ss_pred             CCchhHHH-HHHHHHHHhc
Confidence            54445554 4466666654

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.18  E-value=0.16  Score=49.93  Aligned_cols=208  Identities=13%  Similarity=0.088  Sum_probs=139.8

Q ss_pred             ceeeccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcC
Q 021317           12 VEVFMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASG   90 (314)
Q Consensus        12 ~~v~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g   90 (314)
                      -+..||.+..+..+..|..-|. +..++.+.      +...|.+|+-..+.+.+++...---|..-|..+.+-..+    
T Consensus        39 dL~~lLdSnkd~~KleAmKRIia~iA~G~dv------S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL----  108 (968)
T KOG1060|consen   39 DLKQLLDSNKDSLKLEAMKRIIALIAKGKDV------SLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL----  108 (968)
T ss_pred             HHHHHHhccccHHHHHHHHHHHHHHhcCCcH------HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee----
Confidence            3467889988888888888777 55555542      233577888888999999998888888888765543333    


Q ss_pred             cHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCC-hhhhhH
Q 021317           91 AAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRIA  169 (314)
Q Consensus        91 ~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~  169 (314)
                      -|..+-+-|.++++.+|..|+++|..+--      .++..=.+-.+-+...+.  .+-++..|..++-.|-+- ++.+.+
T Consensus       109 SIntfQk~L~DpN~LiRasALRvlSsIRv------p~IaPI~llAIk~~~~D~--s~yVRk~AA~AIpKLYsLd~e~k~q  180 (968)
T KOG1060|consen  109 SINTFQKALKDPNQLIRASALRVLSSIRV------PMIAPIMLLAIKKAVTDP--SPYVRKTAAHAIPKLYSLDPEQKDQ  180 (968)
T ss_pred             eHHHHHhhhcCCcHHHHHHHHHHHHhcch------hhHHHHHHHHHHHHhcCC--cHHHHHHHHHhhHHHhcCChhhHHH
Confidence            24556677899999999999988866432      222211111222222333  335666677777666544 555554


Q ss_pred             HHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCC
Q 021317          170 ITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP  249 (314)
Q Consensus       170 i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~  249 (314)
                      +.      ..+-.+|.+.++.+.-.|+.+.-.+|.+     +-.++- +-..+|++++.+-+...|-.....|..-|++.
T Consensus       181 L~------e~I~~LLaD~splVvgsAv~AF~evCPe-----rldLIH-knyrklC~ll~dvdeWgQvvlI~mL~RYAR~~  248 (968)
T KOG1060|consen  181 LE------EVIKKLLADRSPLVVGSAVMAFEEVCPE-----RLDLIH-KNYRKLCRLLPDVDEWGQVVLINMLTRYARHQ  248 (968)
T ss_pred             HH------HHHHHHhcCCCCcchhHHHHHHHHhchh-----HHHHhh-HHHHHHHhhccchhhhhHHHHHHHHHHHHHhc
Confidence            44      3566677888899999999999998843     333333 34788888888888888877777766666544

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=96.17  E-value=0.094  Score=49.58  Aligned_cols=156  Identities=20%  Similarity=0.190  Sum_probs=115.9

Q ss_pred             cHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCC--chHHHHHHHHHHHHhcCChhhhh
Q 021317           91 AAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKK--YSKFAEKATALLEILSSSEEGRI  168 (314)
Q Consensus        91 ~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~--~~~~~~~a~~~L~~L~~~~~~~~  168 (314)
                      ....+.+++.++++..+..+..-|..++.+..-...+....++..|..++.++..  ...+...+++++..+-.+.-.--
T Consensus        84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW  163 (713)
T KOG2999|consen   84 YAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW  163 (713)
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence            5667889999999988888999999999999989999999999999999999765  34555556666655443322222


Q ss_pred             HHHhccCCHHHHHHHh--hcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 021317          169 AITNSDGGILTLVETV--EDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLR  246 (314)
Q Consensus       169 ~i~~~~g~v~~Lv~ll--~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~  246 (314)
                      ..+ ...+|.....+.  +.-+..+-..|+..|-++...++ ..++.+.++--++.|++.++.++..++..|.+++..+-
T Consensus       164 ~~~-~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~-~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~  241 (713)
T KOG2999|consen  164 ESV-SNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSD-TLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALF  241 (713)
T ss_pred             eec-ccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCCh-HHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            222 233333333333  22345667889999999888764 56777888889999999999999999999999888875


Q ss_pred             cC
Q 021317          247 DT  248 (314)
Q Consensus       247 ~~  248 (314)
                      ..
T Consensus       242 ~~  243 (713)
T KOG2999|consen  242 RK  243 (713)
T ss_pred             hh
Confidence            43

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=96.07  E-value=0.57  Score=42.11  Aligned_cols=188  Identities=22%  Similarity=0.247  Sum_probs=112.6

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHh--hcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC---CCCchhh
Q 021317           53 PLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIA--ASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC---KENSSPI  127 (314)
Q Consensus        53 ~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~--~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~---~~~~~~i  127 (314)
                      -.+..+...+...|+.++..+.++-...-....+.  ....+..+.+.++.+..+-+..|+.++.-++..   .+....+
T Consensus        47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei  126 (309)
T PF05004_consen   47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI  126 (309)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence            34555556678889999998888765543333333  234677888888888776677777777777743   2445555


Q ss_pred             hhcCCcHHHHHHhhccCCchHHHHHHHHHHHH---hcCC-hhhhhHHHhccCCHHHHHH--Hhhc-C---------CHHH
Q 021317          128 LDATAVPPLINLLKDCKKYSKFAEKATALLEI---LSSS-EEGRIAITNSDGGILTLVE--TVED-G---------SLVS  191 (314)
Q Consensus       128 ~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~---L~~~-~~~~~~i~~~~g~v~~Lv~--ll~~-~---------~~~~  191 (314)
                      .+ ...|.|...+.++......+..++.+|.-   ++.. .+.......   .+..+..  ..+. +         ++.+
T Consensus       127 ~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~---~le~if~~~~~~~~~~~~~~~~~~~~~l  202 (309)
T PF05004_consen  127 FE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME---SLESIFLLSILKSDGNAPVVAAEDDAAL  202 (309)
T ss_pred             HH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH---HHHHHHHHHhcCcCCCcccccCCCccHH
Confidence            55 37788889988876544554555544443   3332 222221111   2222211  1111 1         2456


Q ss_pred             HHHHHHHHHHhhccCcH-HHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 021317          192 TQHAVGALLSLCQSCRD-KYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLR  246 (314)
Q Consensus       192 ~~~A~~~L~~L~~~~~~-~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~  246 (314)
                      ...|+.+-.-|...-+. ... ... ...++.|..++.+.+..+|..|-.+|..|-
T Consensus       203 ~~aAL~aW~lLlt~~~~~~~~-~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~  256 (309)
T PF05004_consen  203 VAAALSAWALLLTTLPDSKLE-DLL-EEALPALSELLDSDDVDVRIAAGEAIALLY  256 (309)
T ss_pred             HHHHHHHHHHHHhcCCHHHHH-HHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            66666665555544332 223 222 346899999999999999999887777664

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.99  E-value=0.13  Score=50.52  Aligned_cols=176  Identities=19%  Similarity=0.222  Sum_probs=113.5

Q ss_pred             cHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC-chhhhh
Q 021317           51 IPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKEN-SSPILD  129 (314)
Q Consensus        51 v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~-~~~i~~  129 (314)
                      ..++.+.++++++-++..++....++  ++.+.......|.++.|-.++.+.++.+..+|+.+|..+...+.+ -..-..
T Consensus       123 ~~Pl~~~l~d~~~yvRktaa~~vakl--~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~  200 (734)
T KOG1061|consen  123 CDPLLKCLKDDDPYVRKTAAVCVAKL--FDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELN  200 (734)
T ss_pred             HHHHHHhccCCChhHHHHHHHHHHHh--hcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCccccc
Confidence            45788889999999998777666665  455667778899999999999999999999999999999965543 222223


Q ss_pred             cCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhh-hHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcH
Q 021317          130 ATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGR-IAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRD  208 (314)
Q Consensus       130 ~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~-~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~  208 (314)
                      ...+..++..+...+.|.++     .+|-+++...... ....   ..+..+...|.+.++.+.-.+...+.++..... 
T Consensus       201 ~~~~~~lL~al~ec~EW~qi-----~IL~~l~~y~p~d~~ea~---~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~-  271 (734)
T KOG1061|consen  201 PQLINKLLEALNECTEWGQI-----FILDCLAEYVPKDSREAE---DICERLTPRLQHANSAVVLSAVKVILQLVKYLK-  271 (734)
T ss_pred             HHHHHHHHHHHHHhhhhhHH-----HHHHHHHhcCCCCchhHH---HHHHHhhhhhccCCcceEeehHHHHHHHHHHHH-
Confidence            44666677777776665443     3344444432111 1221   144566667777777777777777777776543 


Q ss_pred             HHHHHHHHcCChHHHHHhhhcCCHHHHHHHH
Q 021317          209 KYRQLILKEGAIPGLLRLTVEGTFEAQERAR  239 (314)
Q Consensus       209 ~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~  239 (314)
                      . .....-...-++|+.++...+ +++--|.
T Consensus       272 ~-~~~~~~~K~~~pl~tlls~~~-e~qyvaL  300 (734)
T KOG1061|consen  272 Q-VNELLFKKVAPPLVTLLSSES-EIQYVAL  300 (734)
T ss_pred             H-HHHHHHHHhcccceeeecccc-hhhHHHH
Confidence            2 222222345556666665444 4444333

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=95.99  E-value=0.22  Score=50.12  Aligned_cols=266  Identities=18%  Similarity=0.123  Sum_probs=137.4

Q ss_pred             ccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHH
Q 021317           16 METYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPL   94 (314)
Q Consensus        16 ~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~   94 (314)
                      ...++|-..|-.|+.-|. -...+.-+-..=-+..++..++++|.+.+++++..|+.+++-|+.- -...++  ...+..
T Consensus        13 kmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsK-vke~~l--e~~ve~   89 (1233)
T KOG1824|consen   13 KMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSK-VKEDQL--ETIVEN   89 (1233)
T ss_pred             HccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhh-chHHHH--HHHHHH
Confidence            345666677777877776 3332221111112345678899999999999999999999998731 000001  112223


Q ss_pred             HHHHhccCCHHHHHH-HHHHHHHhcCCCCCchhhhhcCCcHHHHHHh----hccCCchHHHHHHHHHHHHhcCC-hhhhh
Q 021317           95 LVQILHSGSVQGRVD-AVTALHYLSTCKENSSPILDATAVPPLINLL----KDCKKYSKFAEKATALLEILSSS-EEGRI  168 (314)
Q Consensus        95 Lv~lL~~~~~~~~~~-a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL----~~~~~~~~~~~~a~~~L~~L~~~-~~~~~  168 (314)
                      |..-+-++.+..+.- +++....++.-++.........+.+.+...+    ....+...++-.++.++..+-.. .+---
T Consensus        90 L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~  169 (1233)
T KOG1824|consen   90 LCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLP  169 (1233)
T ss_pred             HhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCc
Confidence            333322333333322 2332222333332222233333444444444    33222223445555555433221 11111


Q ss_pred             HHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhc-CCHHHHHHHHHHHHHhhc
Q 021317          169 AITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE-GTFEAQERARTLLDLLRD  247 (314)
Q Consensus       169 ~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~-~~~~~~~~A~~~L~~l~~  247 (314)
                      . . +.+....++..+.+....++..|+.+|..++...+.   ....  +.++.|++=+.. ..+...+--+.+|..+++
T Consensus       170 ~-f-h~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~---~ly~--~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r  242 (1233)
T KOG1824|consen  170 N-F-HLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNR---DLYV--ELIEHLLKGLSNRTQMSATRTYIQCLAAICR  242 (1233)
T ss_pred             c-h-HHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCH---HHHH--HHHHHHHhccCCCCchHHHHHHHHHHHHHHH
Confidence            1 2 345556677777777789999999999999987642   3332  245555553322 333334444456666665


Q ss_pred             CCchhhcchhhhHHHHHHHhhc----CCCHHHHHHHHHHHHHHHHHHHHH
Q 021317          248 TPQEKRLSSSVLEKIVYDIAAR----VDGADKAAETAKRLLQDMVQRSME  293 (314)
Q Consensus       248 ~~~~~~~~~~~~~~lv~~l~~~----~~~~~~~~~~A~~~L~~l~~~s~~  293 (314)
                      ...... . .-.+.+++.+...    ....++-+|...++|..|..+.+.
T Consensus       243 ~ag~r~-~-~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~  290 (1233)
T KOG1824|consen  243 QAGHRF-G-SHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPK  290 (1233)
T ss_pred             Hhcchh-h-cccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChh
Confidence            432211 1 1122233333322    233467799999999999977654

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=95.88  E-value=0.31  Score=43.82  Aligned_cols=184  Identities=16%  Similarity=0.160  Sum_probs=104.2

Q ss_pred             cccCCHHHHHHHHHHhH-hhccCchhHHHHH--hcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC---CCChhHHhhcC
Q 021317           17 ETYFEGYARRLNLMGPL-WQLSKTRNKVKIA--TAGAIPPLVELLKFQNGTLRELAAAAILTLSAA---APNKPAIAASG   90 (314)
Q Consensus        17 l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~--~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~---~~~~~~i~~~g   90 (314)
                      +.......|+.++..+. .+..+... ..+.  ..-.++.+.+.++.+..+-+..|+.++.-++..   .+....+. ..
T Consensus        52 l~eK~~~~Re~aL~~l~~~l~~~~~~-d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~-~~  129 (309)
T PF05004_consen   52 LTEKSSSTREAALEALIRALSSRYLP-DFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIF-EE  129 (309)
T ss_pred             HHhcCHHHHHHHHHHHHHHHHhcccH-HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHH-HH
Confidence            34445677888888877 44333221 2222  223466777778877766666777777777664   23344444 35


Q ss_pred             cHHHHHHHhccCC--HHHHHHHHHHHHHhcCC-CCCchhhhh-cCCcHHH--HHHhhc-cC-------CchHHHHHHHHH
Q 021317           91 AAPLLVQILHSGS--VQGRVDAVTALHYLSTC-KENSSPILD-ATAVPPL--INLLKD-CK-------KYSKFAEKATAL  156 (314)
Q Consensus        91 ~l~~Lv~lL~~~~--~~~~~~a~~~L~nLs~~-~~~~~~i~~-~g~i~~L--v~lL~~-~~-------~~~~~~~~a~~~  156 (314)
                      ..|.|.+.+.+++  +..|..++.+|.-++.- ...-..+.. ...+..+  ....+. +.       +.+.+...|+..
T Consensus       130 ~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~a  209 (309)
T PF05004_consen  130 LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSA  209 (309)
T ss_pred             HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHH
Confidence            7788888888764  45666777777766532 111111111 1122211  111221 11       123455555554


Q ss_pred             HHHhcCC-hhh-hhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 021317          157 LEILSSS-EEG-RIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQ  204 (314)
Q Consensus       157 L~~L~~~-~~~-~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~  204 (314)
                      -.-|.+. +.. .....  ...++.|..+|.+.+..+|..|-.+|+-|..
T Consensus       210 W~lLlt~~~~~~~~~~~--~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E  257 (309)
T PF05004_consen  210 WALLLTTLPDSKLEDLL--EEALPALSELLDSDDVDVRIAAGEAIALLYE  257 (309)
T ss_pred             HHHHHhcCCHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            4444433 332 22332  3479999999999999999999988887753

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=95.83  E-value=0.067  Score=44.45  Aligned_cols=121  Identities=13%  Similarity=0.030  Sum_probs=84.4

Q ss_pred             CHHHHHHHHHHhHhhccCchhHHHHHhc----------------CCcHHHHHHhcC------CCHHHHHHHHHHHHHhcc
Q 021317           21 EGYARRLNLMGPLWQLSKTRNKVKIATA----------------GAIPPLVELLKF------QNGTLRELAAAAILTLSA   78 (314)
Q Consensus        21 ~~~~~~~a~~al~l~~~~~~~~~~l~~~----------------g~v~~Lv~lL~~------~~~~~~~~a~~~L~~La~   78 (314)
                      +...-..++..|.+....+.....+.+.                ..+..|+..+..      ...+-....+.+|.|++.
T Consensus         8 ~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~   87 (192)
T PF04063_consen    8 KSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ   87 (192)
T ss_pred             CcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC
Confidence            3334455555566666666665544422                235667776644      234456678899999999


Q ss_pred             CCCChhHHhhc--Cc--HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhc---CCcHHHHHHhh
Q 021317           79 AAPNKPAIAAS--GA--APLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDA---TAVPPLINLLK  141 (314)
Q Consensus        79 ~~~~~~~i~~~--g~--l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~---g~i~~Lv~lL~  141 (314)
                      .++.|..+.+.  +.  +..|+..+.+.+..-|..++++|+|+|.+.+....+...   +++|.|+--|-
T Consensus        88 ~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa  157 (192)
T PF04063_consen   88 LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA  157 (192)
T ss_pred             CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence            99999999854  44  778888888888888999999999999988877777753   45555555554

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=95.79  E-value=0.025  Score=42.83  Aligned_cols=70  Identities=16%  Similarity=0.114  Sum_probs=56.5

Q ss_pred             CHHHHHHHhh-cCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 021317          176 GILTLVETVE-DGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLR  246 (314)
Q Consensus       176 ~v~~Lv~ll~-~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~  246 (314)
                      .+..|+.+|. +.++.+...|+.=|..++...| ..|..+-+.|+=..+++++.+.+++++..|..++..+-
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p-~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm  114 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYP-NGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM  114 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-G-GGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHCh-hHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            4678999994 4467777889999999999876 56777777888888999999999999999999988764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=95.78  E-value=0.81  Score=43.81  Aligned_cols=224  Identities=10%  Similarity=0.022  Sum_probs=140.0

Q ss_pred             eeeccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC-CC--------
Q 021317           13 EVFMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA-PN--------   82 (314)
Q Consensus        13 ~v~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~~--------   82 (314)
                      .++..+++++++|.++..++. +..-....-....+.-........+++++.++...|+..-..++... +.        
T Consensus       226 vceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~p  305 (858)
T COG5215         226 VCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLP  305 (858)
T ss_pred             eehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcc
Confidence            356778899999999999987 54444444445556555666778889999998888776554444310 10        


Q ss_pred             --------hhHHhhcCcHHHHHHHhccC-------CHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhcc---C
Q 021317           83 --------KPAIAASGAAPLLVQILHSG-------SVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDC---K  144 (314)
Q Consensus        83 --------~~~i~~~g~l~~Lv~lL~~~-------~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~---~  144 (314)
                              -..-.-..++|-|+++|...       +-.....|..+|.-.+....+  .     .+.+++......   .
T Consensus       306 e~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd--~-----i~~pVl~FvEqni~~~  378 (858)
T COG5215         306 EVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD--K-----IMRPVLGFVEQNIRSE  378 (858)
T ss_pred             cCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh--H-----hHHHHHHHHHHhccCc
Confidence                    00011235889999999752       234556666666655543211  2     344444444321   2


Q ss_pred             CchHHHHHHHHHHHHhcCC--hhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHH
Q 021317          145 KYSKFAEKATALLEILSSS--EEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPG  222 (314)
Q Consensus       145 ~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~  222 (314)
                      .| .-++.+.-++..+-..  .+.+..++  +.++|.+...+.+..--+++.+++++..++.+-    ...+--.|-++.
T Consensus       379 ~w-~nreaavmAfGSvm~gp~~~~lT~~V--~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v----a~~i~p~~Hl~~  451 (858)
T COG5215         379 SW-ANREAAVMAFGSVMHGPCEDCLTKIV--PQALPGIENEMSDSCLWVKSTTAWCFGAIADHV----AMIISPCGHLVL  451 (858)
T ss_pred             hh-hhHHHHHHHhhhhhcCccHHHHHhhH--HhhhHHHHHhcccceeehhhHHHHHHHHHHHHH----HHhcCccccccH
Confidence            23 4456666666655443  33455555  568999999998877888999999999998542    223333554554


Q ss_pred             HHHh-hh--cCCHHHHHHHHHHHHHhhcCCc
Q 021317          223 LLRL-TV--EGTFEAQERARTLLDLLRDTPQ  250 (314)
Q Consensus       223 Lv~l-l~--~~~~~~~~~A~~~L~~l~~~~~  250 (314)
                      .++. +.  .+.|.+..++.|..-||.+|-.
T Consensus       452 ~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a  482 (858)
T COG5215         452 EVSASLIGLMDCPFRSINCSWRKENLVDHIA  482 (858)
T ss_pred             HHHHHHhhhhccchHHhhhHHHHHhHHHhhh
Confidence            4442 22  2568888899999999987664

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=95.74  E-value=1.1  Score=45.78  Aligned_cols=237  Identities=15%  Similarity=0.092  Sum_probs=142.0

Q ss_pred             cCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccC-CHHHHHHHHHHHHHhcCCCCCchh
Q 021317           48 AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSG-SVQGRVDAVTALHYLSTCKENSSP  126 (314)
Q Consensus        48 ~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~-~~~~~~~a~~~L~nLs~~~~~~~~  126 (314)
                      .++++.|++.|++.+..++..|+.-++.++....  ..+ ...++...++++... ++..-..++.+|..|+...-..-.
T Consensus       340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~L-ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps  416 (1133)
T KOG1943|consen  340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PEL-ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS  416 (1133)
T ss_pred             HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HHH-HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence            3677888888888899999999999999988655  222 234566667755543 356667899999999865322211


Q ss_pred             hhhcCCcHHHHHHhhcc------CCchHHHHHHHHHHHHhcCChhhh--hHHHhccCCHHHHHHHhhcCCHHHHHHHHHH
Q 021317          127 ILDATAVPPLINLLKDC------KKYSKFAEKATALLEILSSSEEGR--IAITNSDGGILTLVETVEDGSLVSTQHAVGA  198 (314)
Q Consensus       127 i~~~g~i~~Lv~lL~~~------~~~~~~~~~a~~~L~~L~~~~~~~--~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~  198 (314)
                      ..+ .++|.++.-|.-.      .....+++.|+-++|.++...+..  +-+. +.=.-..|+..+-+.+-.+|..|..+
T Consensus       417 ~l~-dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l-~~L~s~LL~~AlFDrevncRRAAsAA  494 (1133)
T KOG1943|consen  417 LLE-DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVL-QSLASALLIVALFDREVNCRRAASAA  494 (1133)
T ss_pred             HHH-HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHH-HHHHHHHHHHHhcCchhhHhHHHHHH
Confidence            111 2445555444321      112367889999999998774433  2222 11112234445567778888888888


Q ss_pred             HHHhhccCcH------------------------HHHHHHHH-cCChHHHHHh-h----hcCCHHHHHHHHHHHHHhhcC
Q 021317          199 LLSLCQSCRD------------------------KYRQLILK-EGAIPGLLRL-T----VEGTFEAQERARTLLDLLRDT  248 (314)
Q Consensus       199 L~~L~~~~~~------------------------~~~~~i~~-~g~v~~Lv~l-l----~~~~~~~~~~A~~~L~~l~~~  248 (314)
                      +.......++                        +....+.+ .|...++.+- +    .+=++.+++.|+++|..|+.-
T Consensus       495 lqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~  574 (1133)
T KOG1943|consen  495 LQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLT  574 (1133)
T ss_pred             HHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHh
Confidence            8765432110                        11222333 4556666652 2    234899999999999998765


Q ss_pred             CchhhcchhhhHHHHHHHhhcCCCHHHH--HHHHHHHHHHHHHHH
Q 021317          249 PQEKRLSSSVLEKIVYDIAARVDGADKA--AETAKRLLQDMVQRS  291 (314)
Q Consensus       249 ~~~~~~~~~~~~~lv~~l~~~~~~~~~~--~~~A~~~L~~l~~~s  291 (314)
                      .+ +....+++++++..... .+...+.  --.+..+...+.+..
T Consensus       575 ~p-k~~a~~~L~~lld~~ls-~~~~~r~g~~la~~ev~~~~~~l~  617 (1133)
T KOG1943|consen  575 EP-KYLADYVLPPLLDSTLS-KDASMRHGVFLAAGEVIGALRKLE  617 (1133)
T ss_pred             hH-HhhcccchhhhhhhhcC-CChHHhhhhHHHHHHHHHHhhhhh
Confidence            44 35566777777766541 1222222  244555555555443

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.63  E-value=0.11  Score=50.99  Aligned_cols=147  Identities=16%  Similarity=0.083  Sum_probs=91.5

Q ss_pred             cHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHH
Q 021317           91 AAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAI  170 (314)
Q Consensus        91 ~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i  170 (314)
                      ...++.+.+++.++.++..++.+..++-..  +.....+.|.++.|-+++.+.++  .+..+|+++|..+...+.+....
T Consensus       122 ~~~Pl~~~l~d~~~yvRktaa~~vakl~~~--~~~~~~~~gl~~~L~~ll~D~~p--~VVAnAlaaL~eI~e~~~~~~~~  197 (734)
T KOG1061|consen  122 LCDPLLKCLKDDDPYVRKTAAVCVAKLFDI--DPDLVEDSGLVDALKDLLSDSNP--MVVANALAALSEIHESHPSVNLL  197 (734)
T ss_pred             HHHHHHHhccCCChhHHHHHHHHHHHhhcC--ChhhccccchhHHHHHHhcCCCc--hHHHHHHHHHHHHHHhCCCCCcc
Confidence            566888999999999999888888777644  45666778999999999996554  78899999999887654431111


Q ss_pred             HhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 021317          171 TNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRD  247 (314)
Q Consensus       171 ~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~  247 (314)
                      .-..-.+..++..+...+...+-..+   -+++...+++-+++   ...++.+...+.+.++.+.-.+...+..+..
T Consensus       198 ~l~~~~~~~lL~al~ec~EW~qi~IL---~~l~~y~p~d~~ea---~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~  268 (734)
T KOG1061|consen  198 ELNPQLINKLLEALNECTEWGQIFIL---DCLAEYVPKDSREA---EDICERLTPRLQHANSAVVLSAVKVILQLVK  268 (734)
T ss_pred             cccHHHHHHHHHHHHHhhhhhHHHHH---HHHHhcCCCCchhH---HHHHHHhhhhhccCCcceEeehHHHHHHHHH
Confidence            10122334455555444443333333   33443333211111   1245566666777777777777766666554

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.57  E-value=0.56  Score=46.83  Aligned_cols=185  Identities=15%  Similarity=0.138  Sum_probs=119.8

Q ss_pred             HHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcH
Q 021317           55 VELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVP  134 (314)
Q Consensus        55 v~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~  134 (314)
                      +..+.++-+.++..++..|..+......+..+...+++......|++.++-+--+|+..+..||.-       .....+|
T Consensus       733 i~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~  805 (982)
T KOG4653|consen  733 ISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILP  805 (982)
T ss_pred             HHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHH
Confidence            344445566788899999999998877777888899999999999999998888999877777743       2233666


Q ss_pred             HHHH-HhhccCCc-hHHHHHHHHHHHHhcCC--hhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHH
Q 021317          135 PLIN-LLKDCKKY-SKFAEKATALLEILSSS--EEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKY  210 (314)
Q Consensus       135 ~Lv~-lL~~~~~~-~~~~~~a~~~L~~L~~~--~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~  210 (314)
                      .|.+ ..+..+.. .+.+-....++.++...  +-......   -.+..++..+++++...|..+++.|+++|.-..-..
T Consensus       806 dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~---~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~v  882 (982)
T KOG4653|consen  806 DLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA---VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQV  882 (982)
T ss_pred             HHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH---HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhh
Confidence            6666 33322111 12222333445444332  11111111   244566677776667778999999999996542122


Q ss_pred             HHHHHHcCChHHHHHhhh-cCCHHHHHHHHHHHHHhhcCCch
Q 021317          211 RQLILKEGAIPGLLRLTV-EGTFEAQERARTLLDLLRDTPQE  251 (314)
Q Consensus       211 ~~~i~~~g~v~~Lv~ll~-~~~~~~~~~A~~~L~~l~~~~~~  251 (314)
                      ...+.+  .+..++.+.+ ++++.+|+.|+-++..+-.+-.+
T Consensus       883 sd~~~e--v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~  922 (982)
T KOG4653|consen  883 SDFFHE--VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGE  922 (982)
T ss_pred             hHHHHH--HHHHHHHHHccCCchhhHHHHHHHHHHHHhccch
Confidence            233333  5566666555 45788999999999888776654

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=95.55  E-value=0.13  Score=44.60  Aligned_cols=97  Identities=12%  Similarity=0.115  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhc-CCCHHHHHHHHHHHHH-hccCCCChhHHhhcCcHHHHHHH
Q 021317           22 GYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLK-FQNGTLRELAAAAILT-LSAAAPNKPAIAASGAAPLLVQI   98 (314)
Q Consensus        22 ~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~-~~~~~~~~~a~~~L~~-La~~~~~~~~i~~~g~l~~Lv~l   98 (314)
                      +.....|++.|. .+--++..|..+.....+..|+++|. ...+.++..++.+|.. |..++.|...+-+.+|+..++.+
T Consensus       105 ~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l  184 (257)
T PF08045_consen  105 DSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL  184 (257)
T ss_pred             hHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence            334555777788 77789999999999999999999995 4568888888888777 55567899989899999999999


Q ss_pred             hccC--CHHHHHHHHHHHHHhc
Q 021317           99 LHSG--SVQGRVDAVTALHYLS  118 (314)
Q Consensus        99 L~~~--~~~~~~~a~~~L~nLs  118 (314)
                      +++.  +.+++..++..|.-..
T Consensus       185 lk~~~~~~~~r~K~~EFL~fyl  206 (257)
T PF08045_consen  185 LKSKSTDRELRLKCIEFLYFYL  206 (257)
T ss_pred             HccccccHHHhHHHHHHHHHHH
Confidence            9876  6788888887765444

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=95.35  E-value=0.12  Score=44.83  Aligned_cols=98  Identities=15%  Similarity=0.171  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHhcc-CCCChhHHhhcCcHHHHHHHhcc-CCHHHHHHHHHHHHHhc-CCCCCchhhhhcCCcHHHHHHhhc
Q 021317           66 RELAAAAILTLSA-AAPNKPAIAASGAAPLLVQILHS-GSVQGRVDAVTALHYLS-TCKENSSPILDATAVPPLINLLKD  142 (314)
Q Consensus        66 ~~~a~~~L~~La~-~~~~~~~i~~~g~l~~Lv~lL~~-~~~~~~~~a~~~L~nLs-~~~~~~~~i~~~g~i~~Lv~lL~~  142 (314)
                      ...|++.|.-++. |+.+|..+.+..++..++.+|+. .++.++..++.+|..+. .++.|...+-+.+++..++.++++
T Consensus       108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~  187 (257)
T PF08045_consen  108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKS  187 (257)
T ss_pred             HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHcc
Confidence            4456677777665 67889999999999999999954 57888899988888777 778899989899999999999999


Q ss_pred             cCCchHHHHHHHHHHHHhcCC
Q 021317          143 CKKYSKFAEKATALLEILSSS  163 (314)
Q Consensus       143 ~~~~~~~~~~a~~~L~~L~~~  163 (314)
                      .....+++-++...|.-....
T Consensus       188 ~~~~~~~r~K~~EFL~fyl~~  208 (257)
T PF08045_consen  188 KSTDRELRLKCIEFLYFYLMP  208 (257)
T ss_pred             ccccHHHhHHHHHHHHHHHcc
Confidence            877777877888877654443

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=95.30  E-value=0.7  Score=46.12  Aligned_cols=168  Identities=15%  Similarity=0.099  Sum_probs=100.9

Q ss_pred             cccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHH
Q 021317           17 ETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLL   95 (314)
Q Consensus        17 l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~L   95 (314)
                      +.+.++..|..|.+-+. ....+++.-..      .+.+++...+.+.+++.-.---|.+.+........+    ++..+
T Consensus        28 l~s~n~~~kidAmK~iIa~M~~G~dmssL------f~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL----avNti   97 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQMSLGEDMSSL------FPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL----AVNTI   97 (757)
T ss_pred             ccccChHHHHHHHHHHHHHHhcCCChHHH------HHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH----HHHHH
Confidence            56667777888887665 44444443222      244566666667777776666666666654422222    24455


Q ss_pred             HHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccC
Q 021317           96 VQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDG  175 (314)
Q Consensus        96 v~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g  175 (314)
                      .+=+.++++.+|..|++++..|=...      +-..+++++.+++.++++  -++..|.-++.++-.-  .+..+. +.|
T Consensus        98 ~kDl~d~N~~iR~~AlR~ls~l~~~e------l~~~~~~~ik~~l~d~~a--yVRk~Aalav~kly~l--d~~l~~-~~g  166 (757)
T COG5096          98 QKDLQDPNEEIRGFALRTLSLLRVKE------LLGNIIDPIKKLLTDPHA--YVRKTAALAVAKLYRL--DKDLYH-ELG  166 (757)
T ss_pred             HhhccCCCHHHHHHHHHHHHhcChHH------HHHHHHHHHHHHccCCcH--HHHHHHHHHHHHHHhc--CHhhhh-ccc
Confidence            55567778888888777776543221      112356667777766654  5666655555554322  122223 566


Q ss_pred             CHHHHHHHhhcCCHHHHHHHHHHHHHhhcc
Q 021317          176 GILTLVETVEDGSLVSTQHAVGALLSLCQS  205 (314)
Q Consensus       176 ~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~  205 (314)
                      .+..+..++.+.++.+..+|+.+|..+...
T Consensus       167 ~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         167 LIDILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             HHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence            777777777777788888888887777643

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=95.27  E-value=0.037  Score=45.65  Aligned_cols=112  Identities=13%  Similarity=0.209  Sum_probs=76.5

Q ss_pred             CcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC--CCchhhhhcCCcHHHHHHhhccC-------CchHHHHHHHHHHHHh
Q 021317           90 GAAPLLVQILHSGSVQGRVDAVTALHYLSTCK--ENSSPILDATAVPPLINLLKDCK-------KYSKFAEKATALLEIL  160 (314)
Q Consensus        90 g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~--~~~~~i~~~g~i~~Lv~lL~~~~-------~~~~~~~~a~~~L~~L  160 (314)
                      .....+++.+.+.....  ..+.-|.-.-...  .-...+++.||+..|+++|..-.       .+......++.++..|
T Consensus        66 ~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal  143 (187)
T PF06371_consen   66 SSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL  143 (187)
T ss_dssp             HHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence            34455677776654322  1122221111111  23456778899999999886421       2235667789999999


Q ss_pred             cCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 021317          161 SSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLC  203 (314)
Q Consensus       161 ~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~  203 (314)
                      ..+..+...++.+.+++..++..|.+.+..++..++..|..+|
T Consensus       144 ~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  144 MNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             TSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             HccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            9999999999988999999999999999999999999999887

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=95.26  E-value=1.3  Score=44.52  Aligned_cols=185  Identities=15%  Similarity=0.087  Sum_probs=127.3

Q ss_pred             CCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHh
Q 021317           61 QNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLL  140 (314)
Q Consensus        61 ~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL  140 (314)
                      ..+.++..|+++++.-+.......  ..++.+.-|+++....+.++......+|...+..+.-.....+..+.|....+.
T Consensus       503 ~~~~~ki~a~~~~~~~~~~~vl~~--~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF  580 (1005)
T KOG2274|consen  503 VPPPVKISAVRAFCGYCKVKVLLS--LQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLF  580 (1005)
T ss_pred             CCCchhHHHHHHHHhccCceeccc--cchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHH
Confidence            345667777777776652111111  135778888888888888998889999999997776666666777777777777


Q ss_pred             hccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCC----HHHHHHHHHHHHHhhccCcHHHHHHHHH
Q 021317          141 KDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGS----LVSTQHAVGALLSLCQSCRDKYRQLILK  216 (314)
Q Consensus       141 ~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~----~~~~~~A~~~L~~L~~~~~~~~~~~i~~  216 (314)
                      ...++++.+...+--++..++....+..-+.  .-.+|.++..|....    ......|+..|.-+-...++..-..+..
T Consensus       581 ~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~--e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~  658 (1005)
T KOG2274|consen  581 LKYSEDPQVASLAQDLFEELLQIAANYGPMQ--ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC  658 (1005)
T ss_pred             HHhcCCchHHHHHHHHHHHHHHHHHhhcchH--HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH
Confidence            6555555777777788888887666666664  458999999997654    5556667777766655544333333332


Q ss_pred             cCChHHHHH-hhhcCCHHHHHHHHHHHHHhhcCCc
Q 021317          217 EGAIPGLLR-LTVEGTFEAQERARTLLDLLRDTPQ  250 (314)
Q Consensus       217 ~g~v~~Lv~-ll~~~~~~~~~~A~~~L~~l~~~~~  250 (314)
                       -+.|++.+ .+.+++...-.+|-.+|+.+-....
T Consensus       659 -~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~  692 (1005)
T KOG2274|consen  659 -YAFPAVAKITLHSDDHETLQNATECLRALISVTL  692 (1005)
T ss_pred             -HHhHHhHhheeecCChHHHHhHHHHHHHHHhcCH
Confidence             46777777 4556677778888889988876543

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=95.25  E-value=0.71  Score=46.06  Aligned_cols=168  Identities=17%  Similarity=0.074  Sum_probs=118.9

Q ss_pred             hcCCCHHHHHHHHH-HHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHH
Q 021317           58 LKFQNGTLRELAAA-AILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPL  136 (314)
Q Consensus        58 L~~~~~~~~~~a~~-~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L  136 (314)
                      +.+.+...+..|.. ++..++..++-      .-..+.+++...+.|.+++.-.-.=|.+.+...+....+    ++..+
T Consensus        28 l~s~n~~~kidAmK~iIa~M~~G~dm------ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL----avNti   97 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQMSLGEDM------SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL----AVNTI   97 (757)
T ss_pred             ccccChHHHHHHHHHHHHHHhcCCCh------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH----HHHHH
Confidence            55556666666665 55556554441      223466677777888999988888888887554421111    34445


Q ss_pred             HHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHH
Q 021317          137 INLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK  216 (314)
Q Consensus       137 v~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~  216 (314)
                      .+=+++.+  +.++-.|++.+..+-.     ..+.  .-.++.+.+++.++++-+|..|+-++..+-..+    ++...+
T Consensus        98 ~kDl~d~N--~~iR~~AlR~ls~l~~-----~el~--~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld----~~l~~~  164 (757)
T COG5096          98 QKDLQDPN--EEIRGFALRTLSLLRV-----KELL--GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD----KDLYHE  164 (757)
T ss_pred             HhhccCCC--HHHHHHHHHHHHhcCh-----HHHH--HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC----Hhhhhc
Confidence            55555554  4788888888865422     1222  236778999999999999999999999998665    466777


Q ss_pred             cCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 021317          217 EGAIPGLLRLTVEGTFEAQERARTLLDLLRDT  248 (314)
Q Consensus       217 ~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~  248 (314)
                      .|.+..+..++.+.+|.+..+|...|..+...
T Consensus       165 ~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         165 LGLIDILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             ccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence            88899999999999999999999999998654

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=95.20  E-value=0.0053  Score=56.80  Aligned_cols=182  Identities=15%  Similarity=0.090  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHHHhccCCCChhH-HhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC----CCCc----hhhhhcCCcH
Q 021317           64 TLRELAAAAILTLSAAAPNKPA-IAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC----KENS----SPILDATAVP  134 (314)
Q Consensus        64 ~~~~~a~~~L~~La~~~~~~~~-i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~----~~~~----~~i~~~g~i~  134 (314)
                      -++..|.+++.-+..++..+.. +.-..+...+...|.+..-..+..+++++.|++..    -++-    .++... .+.
T Consensus       406 lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~-ll~  484 (728)
T KOG4535|consen  406 LVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGL-LLL  484 (728)
T ss_pred             HHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHH-HHH
Confidence            3555666666666667655443 33556677777778887888999999999999742    1221    111111 122


Q ss_pred             HHHHHh-hccCCchHHHHHHHHHHHHhcCChhhhhHHHh---ccCCHHHHHHH-hhcCCHHHHHHHHHHHHHhhccCcHH
Q 021317          135 PLINLL-KDCKKYSKFAEKATALLEILSSSEEGRIAITN---SDGGILTLVET-VEDGSLVSTQHAVGALLSLCQSCRDK  209 (314)
Q Consensus       135 ~Lv~lL-~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~---~~g~v~~Lv~l-l~~~~~~~~~~A~~~L~~L~~~~~~~  209 (314)
                      .+...- ..+.+..++..++.+.|.|+...-+.-.....   ..|.+..++.. ...+..+++.+|+-++.||.++..-.
T Consensus       485 ~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~  564 (728)
T KOG4535|consen  485 KMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALP  564 (728)
T ss_pred             HHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcccc
Confidence            222221 12222337888899999988765332111110   12222222222 22356789999999999999764211


Q ss_pred             HHHHHHHcCChHHHHHhhhc-CCHHHHHHHHHHHHHhh
Q 021317          210 YRQLILKEGAIPGLLRLTVE-GTFEAQERARTLLDLLR  246 (314)
Q Consensus       210 ~~~~i~~~g~v~~Lv~ll~~-~~~~~~~~A~~~L~~l~  246 (314)
                      .+..-+...+.+.|..++.+ .+-.++.+|+.+|..-.
T Consensus       565 lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~  602 (728)
T KOG4535|consen  565 LQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPG  602 (728)
T ss_pred             ccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCC
Confidence            22233334578888887766 56888888998886544

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=95.17  E-value=0.041  Score=31.01  Aligned_cols=28  Identities=29%  Similarity=0.399  Sum_probs=25.0

Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 021317           92 APLLVQILHSGSVQGRVDAVTALHYLST  119 (314)
Q Consensus        92 l~~Lv~lL~~~~~~~~~~a~~~L~nLs~  119 (314)
                      +|.+++++.++++++|..|+.+|..++.
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            7899999999999999999999998864

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=95.15  E-value=2.9  Score=39.35  Aligned_cols=146  Identities=14%  Similarity=0.142  Sum_probs=104.2

Q ss_pred             HHHHhccCCHHHHHHHHHHHHHhcCCCC----CchhhhhcCCcHHHHHHhhccC-----CchHHHHHHHHHHHHhcCChh
Q 021317           95 LVQILHSGSVQGRVDAVTALHYLSTCKE----NSSPILDATAVPPLINLLKDCK-----KYSKFAEKATALLEILSSSEE  165 (314)
Q Consensus        95 Lv~lL~~~~~~~~~~a~~~L~nLs~~~~----~~~~i~~~g~i~~Lv~lL~~~~-----~~~~~~~~a~~~L~~L~~~~~  165 (314)
                      +..++...+.+-+..|+.....+..+++    +|..+.++=+.+.+=+++.+++     ++.-.+.-+.++|..+|+.++
T Consensus        16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE   95 (698)
T KOG2611|consen   16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE   95 (698)
T ss_pred             HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence            5566666777778888888888886654    7778888888888888887532     222345567788999999876


Q ss_pred             h--hhHHHhccCCHHHHHHHhhcC-CH------HHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhc-CCHHHH
Q 021317          166 G--RIAITNSDGGILTLVETVEDG-SL------VSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE-GTFEAQ  235 (314)
Q Consensus       166 ~--~~~i~~~~g~v~~Lv~ll~~~-~~------~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~-~~~~~~  235 (314)
                      -  ...+++   .||.|+..+..+ ++      ...+.+-.+|..++...+  ..+.++..|+++.+.+.-.. +-..-+
T Consensus        96 lAsh~~~v~---~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~--G~~~Lia~G~~~~~~Q~y~~~~~~~d~  170 (698)
T KOG2611|consen   96 LASHEEMVS---RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEA--GLMTLIASGGLRVIAQMYELPDGSHDM  170 (698)
T ss_pred             hccCHHHHH---hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCc--hhHHHHhcCchHHHHHHHhCCCCchhH
Confidence            4  566773   899999999643 22      367889999999998864  48889999999999985433 333444


Q ss_pred             HHHHHHHHHh
Q 021317          236 ERARTLLDLL  245 (314)
Q Consensus       236 ~~A~~~L~~l  245 (314)
                      .-|..++..+
T Consensus       171 alal~Vlll~  180 (698)
T KOG2611|consen  171 ALALKVLLLL  180 (698)
T ss_pred             HHHHHHHHHH
Confidence            4444444333

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=95.12  E-value=1.8  Score=42.86  Aligned_cols=217  Identities=13%  Similarity=0.059  Sum_probs=127.0

Q ss_pred             eeccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHh-hcCc
Q 021317           14 VFMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIA-ASGA   91 (314)
Q Consensus        14 v~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~-~~g~   91 (314)
                      .+.|....+++.-..+.|+. ...-..-.+..=--.|.+|.|...|++.+..+++++...++.++.......... +-..
T Consensus       847 yEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRI  926 (1172)
T KOG0213|consen  847 YEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRI  926 (1172)
T ss_pred             HHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHH
Confidence            45566667777666666655 222111111111135889999999999999999999999999998643211111 1223


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHH
Q 021317           92 APLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAIT  171 (314)
Q Consensus        92 l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~  171 (314)
                      ---|+++|.+.+.+.+.+|...++.++..-      .-..++..|++-|+..    +.+...++.+. ++-       +.
T Consensus       927 cfeLlelLkahkK~iRRaa~nTfG~IakaI------GPqdVLatLlnnLkvq----eRq~RvcTtva-IaI-------Va  988 (1172)
T KOG0213|consen  927 CFELLELLKAHKKEIRRAAVNTFGYIAKAI------GPQDVLATLLNNLKVQ----ERQNRVCTTVA-IAI-------VA  988 (1172)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHhc------CHHHHHHHHHhcchHH----HHHhchhhhhh-hhh-------hh
Confidence            446788889999999999999988876431      1122333333333331    21222222221 111       11


Q ss_pred             hccCCHHHHHHHhh---cCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 021317          172 NSDGGILTLVETVE---DGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDT  248 (314)
Q Consensus       172 ~~~g~v~~Lv~ll~---~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~  248 (314)
                      ...|-...|-.+|.   ..+..+|.-.+.+|+.+-..-.+-.++.+-  -..|.|-..+-+.|+.-++-|+.++..++-+
T Consensus       989 E~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiy--av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg 1066 (1172)
T KOG0213|consen  989 ETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIY--AVTPLLEDALMDRDLVHRQTAMNVIKHLALG 1066 (1172)
T ss_pred             hhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHH--HhhHHHHHhhccccHHHHHHHHHHHHHHhcC
Confidence            12344445555554   456778877777777766443222222222  2345555577778888899999999999866


Q ss_pred             Cc
Q 021317          249 PQ  250 (314)
Q Consensus       249 ~~  250 (314)
                      ..
T Consensus      1067 ~~ 1068 (1172)
T KOG0213|consen 1067 VP 1068 (1172)
T ss_pred             CC
Confidence            54

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=95.12  E-value=0.04  Score=41.74  Aligned_cols=68  Identities=19%  Similarity=0.247  Sum_probs=54.6

Q ss_pred             cHHHHHHhc-CCCHHHHHHHHHHHHHhccC-CCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhc
Q 021317           51 IPPLVELLK-FQNGTLRELAAAAILTLSAA-APNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLS  118 (314)
Q Consensus        51 v~~Lv~lL~-~~~~~~~~~a~~~L~~La~~-~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs  118 (314)
                      +..|+.+|. +.++....-|+.=|+.+..+ |.++..+.+.|+=..+++++.+++++++..|+.++..+.
T Consensus        45 lk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm  114 (119)
T PF11698_consen   45 LKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM  114 (119)
T ss_dssp             HHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            567899994 44677777788888887774 677777778899999999999999999999999987664

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=95.05  E-value=0.045  Score=30.85  Aligned_cols=29  Identities=24%  Similarity=0.331  Sum_probs=25.6

Q ss_pred             hHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 021317          220 IPGLLRLTVEGTFEAQERARTLLDLLRDT  248 (314)
Q Consensus       220 v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~  248 (314)
                      +|.+++++++.++++|..|+.+|..++++
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            68899999999999999999999998764

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=94.98  E-value=3.1  Score=42.27  Aligned_cols=194  Identities=11%  Similarity=0.069  Sum_probs=124.8

Q ss_pred             HHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhh-hcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCC-hhhhhHHH
Q 021317           94 LLVQILHSGSVQGRVDAVTALHYLSTCKENSSPIL-DATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRIAIT  171 (314)
Q Consensus        94 ~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~  171 (314)
                      .+-.-+.+.+..-+..|+..+........ ....- ..|.+-.++....- +.+..+...++.+|..++.. ...-....
T Consensus       257 ~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~k-DaN~~v~~~aa~~l~~ia~~lr~~~~~~~  334 (815)
T KOG1820|consen  257 NLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLK-DANINVVMLAAQILELIAKKLRPLFRKYA  334 (815)
T ss_pred             HHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhcc-CcchhHHHHHHHHHHHHHHhcchhhHHHH
Confidence            44444556666777777777766665544 11111 13444444444433 23346667777778777765 22322222


Q ss_pred             hccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCch
Q 021317          172 NSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE  251 (314)
Q Consensus       172 ~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~  251 (314)
                        .+..+.++..+++....+++.+..++..++...+.        ....+.+...+++++|..+..+...+..+-.....
T Consensus       335 --~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l--------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~  404 (815)
T KOG1820|consen  335 --KNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL--------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP  404 (815)
T ss_pred             --HhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH--------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC
Confidence              35788999999988888888888888777764431        12466677888999999999877766665543332


Q ss_pred             hhcchhhhHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 021317          252 KRLSSSVLEKIVYDIAARV-DGADKAAETAKRLLQDMVQRSMELSMTRI  299 (314)
Q Consensus       252 ~~~~~~~~~~lv~~l~~~~-~~~~~~~~~A~~~L~~l~~~s~~~~~~~~  299 (314)
                      ....-..+..+++.+..+. |...+++..|..++.-+.+..-+.-..++
T Consensus       405 ~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~  453 (815)
T KOG1820|consen  405 KTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKL  453 (815)
T ss_pred             cCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            3444556666777766555 66678899999988888877766665553

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=94.58  E-value=0.68  Score=41.35  Aligned_cols=163  Identities=14%  Similarity=0.095  Sum_probs=102.4

Q ss_pred             eccccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC--CCh-------hH
Q 021317           15 FMETYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA--PNK-------PA   85 (314)
Q Consensus        15 ~~l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~--~~~-------~~   85 (314)
                      ..+.++++.+|+.|+.++.+++--+.   .+.. ..++.+...++.+++.++..|+.++..+....  +.-       ..
T Consensus        34 P~v~~~~~~vR~~al~cLGl~~Lld~---~~a~-~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~  109 (298)
T PF12719_consen   34 PAVQSSDPAVRELALKCLGLCCLLDK---ELAK-EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDES  109 (298)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHhCh---HHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCcc
Confidence            45678899999999999995443222   1122 22566777787778999999999999976521  111       11


Q ss_pred             HhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccC--CchHHHHHHHHH-HHHhcC
Q 021317           86 IAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCK--KYSKFAEKATAL-LEILSS  162 (314)
Q Consensus        86 i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~--~~~~~~~~a~~~-L~~L~~  162 (314)
                      ......++.+...+.+.+++++..++..++.|-.......   ....+..|+-+--++.  ++..+ ..+++. +-..+.
T Consensus       110 ~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~L-rQ~L~~Ffp~y~~  185 (298)
T PF12719_consen  110 VDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRL-RQCLSVFFPVYAS  185 (298)
T ss_pred             chHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHH-HHHHHHHHHHHHc
Confidence            2234577788888899999999999999999886543222   1334444444443332  22244 345544 445565


Q ss_pred             ChhhhhHHHhccCCHHHHHHHhhc
Q 021317          163 SEEGRIAITNSDGGILTLVETVED  186 (314)
Q Consensus       163 ~~~~~~~i~~~~g~v~~Lv~ll~~  186 (314)
                      .....+..+ ....++.+-.+...
T Consensus       186 s~~~~Q~~l-~~~f~~~l~~~~~~  208 (298)
T PF12719_consen  186 SSPENQERL-AEAFLPTLRTLSNA  208 (298)
T ss_pred             CCHHHHHHH-HHHHHHHHHHHHhC
Confidence            544333444 35677777776654

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=94.42  E-value=1.3  Score=44.92  Aligned_cols=137  Identities=15%  Similarity=0.120  Sum_probs=94.3

Q ss_pred             cCCCcceeeccccCCHHHHHHHHHHhHhhccCchhHHHHH-hcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC--CCh
Q 021317            7 ESPRGVEVFMETYFEGYARRLNLMGPLWQLSKTRNKVKIA-TAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA--PNK   83 (314)
Q Consensus         7 ~~~~~~~v~~l~~~~~~~~~~a~~al~l~~~~~~~~~~l~-~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~--~~~   83 (314)
                      |.|+.+++.+-.-+++-.+..|++|+.+...++-.-.... -..+++.+..+++......+...+.++-.|..+-  ...
T Consensus       608 eL~~~L~il~eRl~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~  687 (1233)
T KOG1824|consen  608 ELPRTLPILLERLGNEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIP  687 (1233)
T ss_pred             hhHHHHHHHHHHHhchhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            5577788877778888899999999984444443322211 2345788888887666677777777777666542  111


Q ss_pred             hHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccC
Q 021317           84 PAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCK  144 (314)
Q Consensus        84 ~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~  144 (314)
                      .... .-++..+-.++...+..+-..|...|..+.........-...-.++.++.+++++-
T Consensus       688 ~~~~-e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spl  747 (1233)
T KOG1824|consen  688 AELL-EAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPL  747 (1233)
T ss_pred             HHHH-HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCcc
Confidence            1111 22444555666677888889999999999988777666666778999999999864

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=94.35  E-value=4.7  Score=38.03  Aligned_cols=146  Identities=17%  Similarity=0.181  Sum_probs=102.9

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHhccCC----CChhHHhhcCcHHHHHHHhccC-------CHHHHHHHHHHHHHhcCCCC
Q 021317           54 LVELLKFQNGTLRELAAAAILTLSAAA----PNKPAIAASGAAPLLVQILHSG-------SVQGRVDAVTALHYLSTCKE  122 (314)
Q Consensus        54 Lv~lL~~~~~~~~~~a~~~L~~La~~~----~~~~~i~~~g~l~~Lv~lL~~~-------~~~~~~~a~~~L~nLs~~~~  122 (314)
                      +..++...+.+-+..|+-....+..++    -+|..+.++=|.+.+=++|.+.       +.-.+..++.+|...+..++
T Consensus        16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE   95 (698)
T KOG2611|consen   16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE   95 (698)
T ss_pred             HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence            444555556666777777777777754    3678899999999999999763       34557788889999999887


Q ss_pred             Cc--hhhhhcCCcHHHHHHhhccCCc-----hHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCC-HHHHHH
Q 021317          123 NS--SPILDATAVPPLINLLKDCKKY-----SKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGS-LVSTQH  194 (314)
Q Consensus       123 ~~--~~i~~~g~i~~Lv~lL~~~~~~-----~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~-~~~~~~  194 (314)
                      ..  ..+++  .||.|++.+..+.+.     ..+.+.+-.+|..+++.+.+...++ ..|+++.+.++-.-.+ ..-...
T Consensus        96 lAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Li-a~G~~~~~~Q~y~~~~~~~d~al  172 (698)
T KOG2611|consen   96 LASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLI-ASGGLRVIAQMYELPDGSHDMAL  172 (698)
T ss_pred             hccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHH-hcCchHHHHHHHhCCCCchhHHH
Confidence            44  44554  699999999765332     1256778899999999999988888 6999999987654322 122344


Q ss_pred             HHHHHHHh
Q 021317          195 AVGALLSL  202 (314)
Q Consensus       195 A~~~L~~L  202 (314)
                      |+.++.-+
T Consensus       173 al~Vlll~  180 (698)
T KOG2611|consen  173 ALKVLLLL  180 (698)
T ss_pred             HHHHHHHH
Confidence            55554444

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=94.34  E-value=0.11  Score=41.87  Aligned_cols=148  Identities=18%  Similarity=0.141  Sum_probs=94.3

Q ss_pred             CCcHHHHHHhcC--CCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC-CCCch
Q 021317           49 GAIPPLVELLKF--QNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC-KENSS  125 (314)
Q Consensus        49 g~v~~Lv~lL~~--~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~  125 (314)
                      ..+..++..|..  ..+++|..++-++..+-  +..+. -...-.-+.+-.++.+++.+....++.++..|-.. ++...
T Consensus         3 ~~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~-~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~   79 (157)
T PF11701_consen    3 DELDTLLTSLDMLRQPEEVRSHALVILSKLL--DAARE-EFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGS   79 (157)
T ss_dssp             CCCCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHH-HHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred             HHHHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHH-HHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHH
Confidence            345667766654  46778888888887762  11111 12222233444445554445677888888888744 34444


Q ss_pred             hhh-hcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhc-CCHH-HHHHHHHHHHH
Q 021317          126 PIL-DATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVED-GSLV-STQHAVGALLS  201 (314)
Q Consensus       126 ~i~-~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~-~~~~-~~~~A~~~L~~  201 (314)
                      .+. ..|.++.++.++.....+..+...++.+|..=|.+...|..+.  ..+++-|-..++. .++. ++..|+-+|..
T Consensus        80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~--~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFIS--KNYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCH--HHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHH--HHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            444 6899999999998433445777888888876666666666666  4589999999964 4455 78888877654

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=94.31  E-value=0.66  Score=43.54  Aligned_cols=113  Identities=12%  Similarity=0.117  Sum_probs=76.0

Q ss_pred             cHHHHHHHhccCCHHHHHHHHHHHHHhcCC-CC--------Cchhhhhc----CCcHHHHHHhhccCCchHHHHHHHHHH
Q 021317           91 AAPLLVQILHSGSVQGRVDAVTALHYLSTC-KE--------NSSPILDA----TAVPPLINLLKDCKKYSKFAEKATALL  157 (314)
Q Consensus        91 ~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~--------~~~~i~~~----g~i~~Lv~lL~~~~~~~~~~~~a~~~L  157 (314)
                      .+..|+++|.+  +++...++.++.-|..+ ++        +-..+.+.    -.+|.|++..+..++  ..+...+.+|
T Consensus       272 ~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~--~~k~~yL~AL  347 (415)
T PF12460_consen  272 LLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADD--EIKSNYLTAL  347 (415)
T ss_pred             HHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcCh--hhHHHHHHHH
Confidence            45677777766  66778888888888765 32        11222222    356777777766544  3566778888


Q ss_pred             HHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCc
Q 021317          158 EILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCR  207 (314)
Q Consensus       158 ~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~  207 (314)
                      .++..+-+.....-.-...+|.|++.|...+..++..++.+|..+....+
T Consensus       348 s~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~  397 (415)
T PF12460_consen  348 SHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAP  397 (415)
T ss_pred             HHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCH
Confidence            88877644322222113467888888888888999999999999997764

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=94.23  E-value=1  Score=45.13  Aligned_cols=195  Identities=12%  Similarity=0.103  Sum_probs=122.8

Q ss_pred             HhH-hhccCchhHHHHHhcCCcHHHHHHhcCC-CHHHHHHHHHHHHHhccCCCChhHHhhcCcHH--HHHHHhccCCH-H
Q 021317           31 GPL-WQLSKTRNKVKIATAGAIPPLVELLKFQ-NGTLRELAAAAILTLSAAAPNKPAIAASGAAP--LLVQILHSGSV-Q  105 (314)
Q Consensus        31 al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~--~Lv~lL~~~~~-~  105 (314)
                      +++ ....++++-+.+.+.|+...+..++... +.+.+..+...+.|++...+.+........+.  .+-.++...+. +
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e  573 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE  573 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence            666 6778899999999999999999999754 56788899999999998765544443222222  22234444444 7


Q ss_pred             HHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHH-HHHHh
Q 021317          106 GRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILT-LVETV  184 (314)
Q Consensus       106 ~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~-Lv~ll  184 (314)
                      .-..++++|..+..+.+.   ....+.-+..-+++             ..   ++.........+. ....+.. +..++
T Consensus       574 rsY~~~siLa~ll~~~~~---~~~~~~r~~~~~~l-------------~e---~i~~~~~~~~~~~-~~~~f~~~~~~il  633 (699)
T KOG3665|consen  574 RSYNAASILALLLSDSEK---TTECVFRNSVNELL-------------VE---AISRWLTSEIRVI-NDRSFFPRILRIL  633 (699)
T ss_pred             HHHHHHHHHHHHHhCCCc---CccccchHHHHHHH-------------HH---HhhccCccceeeh-hhhhcchhHHHHh
Confidence            788888888888765443   11221111111111             11   2222232322222 1223333 55555


Q ss_pred             hc-CCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhc-CCHHHHHHHHHHHHHhh
Q 021317          185 ED-GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE-GTFEAQERARTLLDLLR  246 (314)
Q Consensus       185 ~~-~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~-~~~~~~~~A~~~L~~l~  246 (314)
                      .. ..+..+.+|++++.++....+ ++.+.+.+.|+++.+.+.-.. ....+++.+...+.++.
T Consensus       634 ~~s~~~g~~lWal~ti~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  696 (699)
T KOG3665|consen  634 RLSKSDGSQLWALWTIKNVLEQNK-EYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESCE  696 (699)
T ss_pred             cccCCCchHHHHHHHHHHHHHcCh-hhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhccc
Confidence            43 456778999999999999876 588888889999988875332 25666666666665543

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.04  E-value=1.3  Score=43.86  Aligned_cols=99  Identities=10%  Similarity=0.115  Sum_probs=57.5

Q ss_pred             cHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhh-----c----cCCchHHHHHHHHHHHHhc
Q 021317           91 AAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLK-----D----CKKYSKFAEKATALLEILS  161 (314)
Q Consensus        91 ~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~-----~----~~~~~~~~~~a~~~L~~L~  161 (314)
                      .+--++++|.+++-+++..++.....|+.+.          -+..++.+|+     +    ..+..+.++.-..+++..+
T Consensus       318 l~mDvLrvLss~dldvr~Ktldi~ldLvssr----------Nvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~ca  387 (948)
T KOG1058|consen  318 LIMDVLRVLSSPDLDVRSKTLDIALDLVSSR----------NVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACA  387 (948)
T ss_pred             HHHHHHHHcCcccccHHHHHHHHHHhhhhhc----------cHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHh
Confidence            4445556677777777777777777776543          2333444442     1    1223356666677777766


Q ss_pred             CChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 021317          162 SSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQ  204 (314)
Q Consensus       162 ~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~  204 (314)
                      ...+.-     .+.+|+.|+.++.+.++......+..+...-.
T Consensus       388 v~Fp~~-----aatvV~~ll~fisD~N~~aas~vl~FvrE~ie  425 (948)
T KOG1058|consen  388 VKFPEV-----AATVVSLLLDFISDSNEAAASDVLMFVREAIE  425 (948)
T ss_pred             hcChHH-----HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence            553322     23467899999988777654444444444433

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.97  E-value=7.1  Score=38.63  Aligned_cols=102  Identities=20%  Similarity=0.233  Sum_probs=72.8

Q ss_pred             CcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhh-cCCHHHHHHHHHHHHHhhccCcHHH
Q 021317          132 AVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVE-DGSLVSTQHAVGALLSLCQSCRDKY  210 (314)
Q Consensus       132 ~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~-~~~~~~~~~A~~~L~~L~~~~~~~~  210 (314)
                      ++..|-+++.+...  .++-.++..++.|++.......+- ..  .+.++..|+ ..+..++..|+..|..+|..+   +
T Consensus       330 ~~~~Lg~fls~rE~--NiRYLaLEsm~~L~ss~~s~davK-~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~---N  401 (938)
T KOG1077|consen  330 AVNQLGQFLSHRET--NIRYLALESMCKLASSEFSIDAVK-KH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVS---N  401 (938)
T ss_pred             HHHHHHHHhhcccc--cchhhhHHHHHHHHhccchHHHHH-HH--HHHHHHHhccccchHHHHHHHHHHHHHhchh---h
Confidence            45566666666543  566677777888887766666554 22  778888888 567899999999999999764   2


Q ss_pred             HHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 021317          211 RQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLR  246 (314)
Q Consensus       211 ~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~  246 (314)
                      .+.|     +.-|++++.+-++.+|+.-+-=+.-|+
T Consensus       402 ak~I-----V~elLqYL~tAd~sireeivlKvAILa  432 (938)
T KOG1077|consen  402 AKQI-----VAELLQYLETADYSIREEIVLKVAILA  432 (938)
T ss_pred             HHHH-----HHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence            4444     556889998888888886665444554

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=93.79  E-value=0.91  Score=47.04  Aligned_cols=251  Identities=15%  Similarity=0.068  Sum_probs=136.2

Q ss_pred             HHHHHHHHHHhH-hhc-cCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC----CCChhHHhhcCcHHHH
Q 021317           22 GYARRLNLMGPL-WQL-SKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA----APNKPAIAASGAAPLL   95 (314)
Q Consensus        22 ~~~~~~a~~al~-l~~-~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~----~~~~~~i~~~g~l~~L   95 (314)
                      .+.+..|+.-|. ++. .+++++    -..++|.++.++.++..++|..|+.+|..+-..    +..-.-|.-.=.+|.|
T Consensus       437 ~~tK~~ALeLl~~lS~~i~de~~----LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L  512 (1431)
T KOG1240|consen  437 IQTKLAALELLQELSTYIDDEVK----LDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHL  512 (1431)
T ss_pred             chhHHHHHHHHHHHhhhcchHHH----HhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhh
Confidence            455667777666 332 223322    235689999999999999999999998885432    2233334444567888


Q ss_pred             HHHhccC-CHHHHHHHHHHHHHhcC------------------CCCCchhhhh-----------cCCcHHHHHHhhccCC
Q 021317           96 VQILHSG-SVQGRVDAVTALHYLST------------------CKENSSPILD-----------ATAVPPLINLLKDCKK  145 (314)
Q Consensus        96 v~lL~~~-~~~~~~~a~~~L~nLs~------------------~~~~~~~i~~-----------~g~i~~Lv~lL~~~~~  145 (314)
                      -.++.+. ...+|..=+..|.-|+.                  ++.+-+...+           .++-+..+.+|.+..+
T Consensus       513 ~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~  592 (1431)
T KOG1240|consen  513 NHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPP  592 (1431)
T ss_pred             HhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCch
Confidence            8888874 33444433444444442                  1212111111           1111223334433321


Q ss_pred             chHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHH
Q 021317          146 YSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLR  225 (314)
Q Consensus       146 ~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~  225 (314)
                        -++..-+..|.-||.... |+.-  +.=.++.|+.+|.+.+..+|..-...+.-+|..-.    ..-++++.+|-|.+
T Consensus       593 --~Vkr~Lle~i~~LC~FFG-k~ks--ND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG----~rs~seyllPLl~Q  663 (1431)
T KOG1240|consen  593 --IVKRALLESIIPLCVFFG-KEKS--NDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG----WRSVSEYLLPLLQQ  663 (1431)
T ss_pred             --HHHHHHHHHHHHHHHHhh-hccc--ccchHHHHHHHhcCccHHHHHHHHhhccceEEEEe----eeeHHHHHHHHHHH
Confidence              333333344444443211 1110  12245677777776666555444444444443321    11234567788888


Q ss_pred             hhhcCCHHHHHHHHHHHHHhhcCCc-hhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 021317          226 LTVEGTFEAQERARTLLDLLRDTPQ-EKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMV  288 (314)
Q Consensus       226 ll~~~~~~~~~~A~~~L~~l~~~~~-~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~  288 (314)
                      -+.++.+.+-..|.++|..|++... +|......++.+.+.|+   .-+.=.+..+..++....
T Consensus       664 ~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~---hPN~WIR~~~~~iI~~~~  724 (1431)
T KOG1240|consen  664 GLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLC---HPNLWIRRAVLGIIAAIA  724 (1431)
T ss_pred             hccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhhee---CchHHHHHHHHHHHHHHH
Confidence            8888899999999999999987653 23333344444444444   223556777777665544

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=93.70  E-value=2.2  Score=40.03  Aligned_cols=125  Identities=16%  Similarity=0.192  Sum_probs=85.6

Q ss_pred             CcHHHHHHhhccCCchHHHHHHHHHHHHhcCC-hhh-------------hhHHHhccCCHHHHHHHhhcCCHHHHHHHHH
Q 021317          132 AVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEG-------------RIAITNSDGGILTLVETVEDGSLVSTQHAVG  197 (314)
Q Consensus       132 ~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~-~~~-------------~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~  197 (314)
                      .+..|++++.+.    ++...+...+.-+..+ ++.             |+++.  .-.+|.|++..+..+...+...+.
T Consensus       272 ~~~~L~~lL~~~----~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F--~~~~p~L~~~~~~~~~~~k~~yL~  345 (415)
T PF12460_consen  272 LLDKLLELLSSP----ELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFF--TQVLPKLLEGFKEADDEIKSNYLT  345 (415)
T ss_pred             HHHHHHHHhCCh----hhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHH--HHHHHHHHHHHhhcChhhHHHHHH
Confidence            456677777773    4445566666666665 322             45554  236788888888777778899999


Q ss_pred             HHHHhhccCcHHHHHHHHH--cCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHh
Q 021317          198 ALLSLCQSCRDKYRQLILK--EGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIA  267 (314)
Q Consensus       198 ~L~~L~~~~~~~~~~~i~~--~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~  267 (314)
                      +|.++-.+-|.   ..+..  ...+|.|++-+...++.++..+..+|..+....++ .+. +-+..+|+.|.
T Consensus       346 ALs~ll~~vP~---~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~-~i~-~hl~sLI~~LL  412 (415)
T PF12460_consen  346 ALSHLLKNVPK---SVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPE-LIS-EHLSSLIPRLL  412 (415)
T ss_pred             HHHHHHhhCCH---HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHH-HHH-HHHHHHHHHHH
Confidence            99999988763   33332  45888889988888999999999999998876643 222 23334555543

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=93.62  E-value=0.31  Score=39.13  Aligned_cols=145  Identities=14%  Similarity=0.041  Sum_probs=88.0

Q ss_pred             HHHHHHHhcc--CCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCC-hhhhh
Q 021317           92 APLLVQILHS--GSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRI  168 (314)
Q Consensus        92 l~~Lv~lL~~--~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~-~~~~~  168 (314)
                      +..++..|..  ..+++|..+.-++..+-  +..+....+ -+-+.+-.++..+..+ . ...+..++..+-.. ++...
T Consensus         5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~-~~~~~i~~~~~~~~~d-~-~i~~~~~l~~lfp~~~dv~~   79 (157)
T PF11701_consen    5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKE-KISDFIESLLDEGEMD-S-LIIAFSALTALFPGPPDVGS   79 (157)
T ss_dssp             CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHCCHHCC-H-HHHHHHHHHHHCTTTHHHHH
T ss_pred             HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHH-HHHHHHHHHHccccch-h-HHHHHHHHHHHhCCCHHHHH
Confidence            3444555443  46677878877777762  222222221 1223333344443332 3 34566667666544 66677


Q ss_pred             HHHhccCCHHHHHHHhh--cCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhc-CCHH-HHHHHHHHHHH
Q 021317          169 AITNSDGGILTLVETVE--DGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE-GTFE-AQERARTLLDL  244 (314)
Q Consensus       169 ~i~~~~g~v~~Lv~ll~--~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~-~~~~-~~~~A~~~L~~  244 (314)
                      .+....|..+.++.++.  +.+...+..++.+|..=|.+.  . +...+...++++|-+..+. .++. +|-.|+-.|..
T Consensus        80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~--~-~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDK--S-CRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSH--H-HHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccH--H-HHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            77657899999999998  677888888888887766442  4 4444445669999998854 4565 77777766643

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=93.53  E-value=9.7  Score=38.77  Aligned_cols=161  Identities=12%  Similarity=0.107  Sum_probs=91.7

Q ss_pred             HHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhc----CCC----HHHHHHHHHHHHHhccC---CC---ChhHHh--
Q 021317           24 ARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLK----FQN----GTLRELAAAAILTLSAA---AP---NKPAIA--   87 (314)
Q Consensus        24 ~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~----~~~----~~~~~~a~~~L~~La~~---~~---~~~~i~--   87 (314)
                      .-...+..|..+..-..||+.+.+.|+++.|++.|.    .+.    +++-+.-+.++-.+...   +.   ......  
T Consensus       138 ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~ll~ea~~~~~~~~~~~~~~~  217 (802)
T PF13764_consen  138 LLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIESLLSEANSSSSSESKSSSSLS  217 (802)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHhhhhhhhcccccccc
Confidence            333444445578888999999999999999998873    333    45555555555444432   11   111111  


Q ss_pred             -----hcCcHHHHHHHhccC----CHHHHHHHHHHHHHhcCCCCCc-hhhhhcCCcHHHHHHhh---ccCCchHHHHHHH
Q 021317           88 -----ASGAAPLLVQILHSG----SVQGRVDAVTALHYLSTCKENS-SPILDATAVPPLINLLK---DCKKYSKFAEKAT  154 (314)
Q Consensus        88 -----~~g~l~~Lv~lL~~~----~~~~~~~a~~~L~nLs~~~~~~-~~i~~~g~i~~Lv~lL~---~~~~~~~~~~~a~  154 (314)
                           ...-++.+++.+.++    ++.+....+++|-+|+...+.+ ..+++.  ..+.+++=+   ...++..   .-+
T Consensus       218 ~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F~p~l~f~~~D~~~~~~~~---~~L  292 (802)
T PF13764_consen  218 GSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--FKPYLDFDKFDEEHSPDEQ---FKL  292 (802)
T ss_pred             ccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--HHHhcChhhcccccCchHH---HHH
Confidence                 112366667766654    6888899999999999665433 333331  111111111   1111112   224


Q ss_pred             HHHHHhcCC-------hhhhhHHHhccCCHHHHHHHhhcCCHH
Q 021317          155 ALLEILSSS-------EEGRIAITNSDGGILTLVETVEDGSLV  190 (314)
Q Consensus       155 ~~L~~L~~~-------~~~~~~i~~~~g~v~~Lv~ll~~~~~~  190 (314)
                      .+++.++..       ..-|..++ +.|++...+.+|...-+.
T Consensus       293 e~F~~i~~~I~~~~~G~~LK~~Il-~~GIv~~a~~YL~~~~P~  334 (802)
T PF13764_consen  293 ECFCEIAEGIPNNSNGNRLKDKIL-ESGIVQDAIDYLLKHFPS  334 (802)
T ss_pred             HHHHHHHhcCCCCCchHHHHHHHH-HhhHHHHHHHHHHHhCcc
Confidence            444444433       23477788 799999999999765443

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=93.47  E-value=4.2  Score=36.37  Aligned_cols=132  Identities=17%  Similarity=0.117  Sum_probs=90.8

Q ss_pred             HHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhh-cCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHh
Q 021317           94 LLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILD-ATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITN  172 (314)
Q Consensus        94 ~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~  172 (314)
                      .|-+++..-++-.+-.|..+|.+|...++-|..+-. ..+-..++.+++..-...+++-+.+-++|-|+-.+...+.+-.
T Consensus       153 yLgkl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K  232 (432)
T COG5231         153 YLGKLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDK  232 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHH
Confidence            344455555667889999999999999888776554 4566788888887544347788899999999888766644432


Q ss_pred             ccCCHHHHHHHhhcC-CHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHH
Q 021317          173 SDGGILTLVETVEDG-SLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLR  225 (314)
Q Consensus       173 ~~g~v~~Lv~ll~~~-~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~  225 (314)
                      ...-+..|+.+++.. ..++-+.+++++.|++...+.+.-..+.-.|-+.+-++
T Consensus       233 ~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq  286 (432)
T COG5231         233 MDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQ  286 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHH
Confidence            234677888888764 36788889999999997444333333333343334444

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=93.43  E-value=7.2  Score=38.59  Aligned_cols=114  Identities=18%  Similarity=0.123  Sum_probs=79.0

Q ss_pred             CCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhh
Q 021317           49 GAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPIL  128 (314)
Q Consensus        49 g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~  128 (314)
                      |.+..+++...+++..+|...+..|..+.........-+-.+....+..-+.+..|.+|..|..+|..+=.++.+-    
T Consensus        85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de----  160 (892)
T KOG2025|consen   85 GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE----  160 (892)
T ss_pred             HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC----
Confidence            5555666666778889999999999988875444444455677788888888999999999999999987543211    


Q ss_pred             hcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHH
Q 021317          129 DATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAI  170 (314)
Q Consensus       129 ~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i  170 (314)
                      +..+...+..+++.+ +.++++..|   |.|++.++...-.+
T Consensus       161 e~~v~n~l~~liqnD-pS~EVRRaa---LsnI~vdnsTlp~I  198 (892)
T KOG2025|consen  161 ECPVVNLLKDLIQND-PSDEVRRAA---LSNISVDNSTLPCI  198 (892)
T ss_pred             cccHHHHHHHHHhcC-CcHHHHHHH---HHhhccCcccchhH
Confidence            124566778888874 445777654   45666654443333

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.27  E-value=6.9  Score=40.78  Aligned_cols=219  Identities=19%  Similarity=0.202  Sum_probs=119.2

Q ss_pred             CCCHHHHHHHHHHHHHhccCCCChhHHhhc--CcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC--CCchhhhhcCCcHH
Q 021317           60 FQNGTLRELAAAAILTLSAAAPNKPAIAAS--GAAPLLVQILHSGSVQGRVDAVTALHYLSTCK--ENSSPILDATAVPP  135 (314)
Q Consensus        60 ~~~~~~~~~a~~~L~~La~~~~~~~~i~~~--g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~--~~~~~i~~~g~i~~  135 (314)
                      +.+..+|..+.+.|..++..+.......+.  ..-..|..-+++.+...+...+.+|..|-...  +....+..  .|+.
T Consensus       665 ~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k--~I~E  742 (1176)
T KOG1248|consen  665 SSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPK--LIPE  742 (1176)
T ss_pred             cccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHH--HHHH
Confidence            346788999999999988774433322211  12223333344456667777777777776433  23333333  4555


Q ss_pred             HHHHhhccCCchHHHHHHHHHHHHhcCC----hhhhhHHHhccCCHHHHHHHhhcC----CHHHHHHHHHHHHHhhccCc
Q 021317          136 LINLLKDCKKYSKFAEKATALLEILSSS----EEGRIAITNSDGGILTLVETVEDG----SLVSTQHAVGALLSLCQSCR  207 (314)
Q Consensus       136 Lv~lL~~~~~~~~~~~~a~~~L~~L~~~----~~~~~~i~~~~g~v~~Lv~ll~~~----~~~~~~~A~~~L~~L~~~~~  207 (314)
                      ++-.+++.+.  ..++.+..+|..++..    ++.... .  ...|...+..+..+    +.......+-++..+.... 
T Consensus       743 vIL~~Ke~n~--~aR~~Af~lL~~i~~i~~~~d~g~e~-~--~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~-  816 (1176)
T KOG1248|consen  743 VILSLKEVNV--KARRNAFALLVFIGAIQSSLDDGNEP-A--SAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEF-  816 (1176)
T ss_pred             HHHhcccccH--HHHhhHHHHHHHHHHHHhhhcccccc-h--HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHH-
Confidence            5555555443  6677888888887731    111111 0  11444555555432    2322222233444443321 


Q ss_pred             HHHHHHHHH----cCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhc-CCCHHHHHHHHHH
Q 021317          208 DKYRQLILK----EGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAAR-VDGADKAAETAKR  282 (314)
Q Consensus       208 ~~~~~~i~~----~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~-~~~~~~~~~~A~~  282 (314)
                          ..+.+    .+.+..+.-++.+.++++.+.|++.+..+...-++..+... ++.+++.+..+ .+.+-..+.+++-
T Consensus       817 ----~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~-~~~LL~sll~ls~d~k~~~r~Kvr~  891 (1176)
T KOG1248|consen  817 ----KNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPH-LEELLPSLLALSHDHKIKVRKKVRL  891 (1176)
T ss_pred             ----hccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhh-HHHHHHHHHHHHHhhhHHHHHHHHH
Confidence                11222    23455555577788999999999999888765544333332 22233333322 3445667788888


Q ss_pred             HHHHHHHHH
Q 021317          283 LLQDMVQRS  291 (314)
Q Consensus       283 ~L~~l~~~s  291 (314)
                      +|..|.+..
T Consensus       892 LlekLirkf  900 (1176)
T KOG1248|consen  892 LLEKLIRKF  900 (1176)
T ss_pred             HHHHHHHHh
Confidence            888887654

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=93.27  E-value=0.58  Score=46.25  Aligned_cols=157  Identities=15%  Similarity=0.088  Sum_probs=106.4

Q ss_pred             HHHHHHHHHhccCC-CChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCch-hhhh-cCCcHHHHHHhhcc
Q 021317           67 ELAAAAILTLSAAA-PNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSS-PILD-ATAVPPLINLLKDC  143 (314)
Q Consensus        67 ~~a~~~L~~La~~~-~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~-~i~~-~g~i~~Lv~lL~~~  143 (314)
                      ..++.++.||+..+ ..|..|.++-+++.+-.++-..++..+..++..+.||..++..-. .+++ ...++.....+...
T Consensus       560 ~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~  639 (748)
T KOG4151|consen  560 FEALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA  639 (748)
T ss_pred             HHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh
Confidence            45788999999865 457778877777777777778899999999999999998876444 3555 45666666666553


Q ss_pred             CCchHHHHHHHHHHHHhcCChhhh-hHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHH
Q 021317          144 KKYSKFAEKATALLEILSSSEEGR-IAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPG  222 (314)
Q Consensus       144 ~~~~~~~~~a~~~L~~L~~~~~~~-~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~  222 (314)
                      .  +....++.+++..+....++. ..+..-......++.++.+++..++...+.+..|+.... .+....+.....++.
T Consensus       640 ~--E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~-~ei~~~~~~~~~~~~  716 (748)
T KOG4151|consen  640 D--EKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEAL-FEIAEKIFETEVMEL  716 (748)
T ss_pred             h--hHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHH-HHHHHHhccchHHHH
Confidence            2  244455556665455444432 223323456778899999999999999999999966443 244555555555555


Q ss_pred             HHHh
Q 021317          223 LLRL  226 (314)
Q Consensus       223 Lv~l  226 (314)
                      +..+
T Consensus       717 l~~~  720 (748)
T KOG4151|consen  717 LSGL  720 (748)
T ss_pred             HHHH
Confidence            5443

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=93.24  E-value=5.4  Score=34.94  Aligned_cols=213  Identities=14%  Similarity=0.076  Sum_probs=123.0

Q ss_pred             eeeccccCCHHHHHHHHHHhH-hhcc----CchhHHHHHh------c-CCcHHHHHHhcCC--CHHHHHHHHHHHHHhcc
Q 021317           13 EVFMETYFEGYARRLNLMGPL-WQLS----KTRNKVKIAT------A-GAIPPLVELLKFQ--NGTLRELAAAAILTLSA   78 (314)
Q Consensus        13 ~v~~l~~~~~~~~~~a~~al~-l~~~----~~~~~~~l~~------~-g~v~~Lv~lL~~~--~~~~~~~a~~~L~~La~   78 (314)
                      -+.+|++.++..=..|+.-+. +...    +++.+..+.+      . |..+-+..++-.+  ++...+.+...|..|+.
T Consensus        12 ~vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~~   91 (262)
T PF14225_consen   12 AVACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSSTYELTLRLLSRLTP   91 (262)
T ss_pred             HHHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCCcHHHHHHHHHHHhc
Confidence            467889999988888888877 4333    3344444431      2 5566666666444  45556667777877776


Q ss_pred             CCCC--------hhHHhhcCcHHHHHHHhccCC----HHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccC--
Q 021317           79 AAPN--------KPAIAASGAAPLLVQILHSGS----VQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCK--  144 (314)
Q Consensus        79 ~~~~--------~~~i~~~g~l~~Lv~lL~~~~----~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~--  144 (314)
                      .+++        +-.+.=-+.+|.++.-+++++    ......++..|..++...       +.+.+..++.....+.  
T Consensus        92 ~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~-------~~~~La~il~~ya~~~fr  164 (262)
T PF14225_consen   92 LPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQ-------GLPNLARILSSYAKGRFR  164 (262)
T ss_pred             CCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhC-------CCccHHHHHHHHHhcCCC
Confidence            4332        222223356777777777776    133456667888877332       1123333444443322  


Q ss_pred             CchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHH
Q 021317          145 KYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLL  224 (314)
Q Consensus       145 ~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv  224 (314)
                      +..+....+...|+.-.. ++.      +...+..|+++|.++.+.++...+.+|..+-...  +.+.. ...+.+.+|+
T Consensus       165 ~~~dfl~~v~~~l~~~f~-P~~------~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~--d~~~~-~~~dlispll  234 (262)
T PF14225_consen  165 DKDDFLSQVVSYLREAFF-PDH------EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHV--DMRSP-HGADLISPLL  234 (262)
T ss_pred             CHHHHHHHHHHHHHHHhC-chh------HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccc--cCCCC-cchHHHHHHH
Confidence            112333344444432110 111      1235557999999999999999999999988764  23333 4455788888


Q ss_pred             HhhhcCCHHHHHHHHHHHHHh
Q 021317          225 RLTVEGTFEAQERARTLLDLL  245 (314)
Q Consensus       225 ~ll~~~~~~~~~~A~~~L~~l  245 (314)
                      ++++++-   -..|..+|...
T Consensus       235 rlL~t~~---~~eAL~VLd~~  252 (262)
T PF14225_consen  235 RLLQTDL---WMEALEVLDEI  252 (262)
T ss_pred             HHhCCcc---HHHHHHHHHHH
Confidence            8887542   22344455443

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=93.23  E-value=1.1  Score=43.22  Aligned_cols=122  Identities=16%  Similarity=0.168  Sum_probs=72.2

Q ss_pred             hHHHHHHHHHHHHhcCC-hhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHH
Q 021317          147 SKFAEKATALLEILSSS-EEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLR  225 (314)
Q Consensus       147 ~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~  225 (314)
                      .+.+..|...+.....+ ++-...      ++..++.+..+.+..+|..|...|..+|.+++ +....     .+..|++
T Consensus        36 ~k~K~Laaq~I~kffk~FP~l~~~------Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~-~~v~k-----vaDvL~Q  103 (556)
T PF05918_consen   36 PKEKRLAAQFIPKFFKHFPDLQEE------AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP-EHVSK-----VADVLVQ  103 (556)
T ss_dssp             HHHHHHHHHHHHHHHCC-GGGHHH------HHHHHHHHHT-SSHHHHHHHHHHGGGG--T---T-HHH-----HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhChhhHHH------HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH-HHHhH-----HHHHHHH
Confidence            36677788888776655 444433      55689999999999999999999999998864 23322     4678899


Q ss_pred             hhhcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 021317          226 LTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQ  285 (314)
Q Consensus       226 ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~  285 (314)
                      ++.++++......-.+|..|-+..+     .+.+.++...+.....+++..++++...|+
T Consensus       104 lL~tdd~~E~~~v~~sL~~ll~~d~-----k~tL~~lf~~i~~~~~~de~~Re~~lkFl~  158 (556)
T PF05918_consen  104 LLQTDDPVELDAVKNSLMSLLKQDP-----KGTLTGLFSQIESSKSGDEQVRERALKFLR  158 (556)
T ss_dssp             HTT---HHHHHHHHHHHHHHHHH-H-----HHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred             HHhcccHHHHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence            9998887766666666666544222     344444444444222344556676666553

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=93.15  E-value=3.6  Score=42.97  Aligned_cols=225  Identities=13%  Similarity=0.166  Sum_probs=125.5

Q ss_pred             cHHHHHHhcCC-CHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC-----CCCc
Q 021317           51 IPPLVELLKFQ-NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC-----KENS  124 (314)
Q Consensus        51 v~~Lv~lL~~~-~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-----~~~~  124 (314)
                      ++.+...+++- ..+.+..|+..|..|+..-+.-..+  ..++|-++.++.++...+|..|+.+|..+...     +.+.
T Consensus       424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~L--DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~da  501 (1431)
T KOG1240|consen  424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKL--DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDA  501 (1431)
T ss_pred             HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHH--hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccc
Confidence            35555555442 5678889999999999854322222  35789999999999999999999988877532     2233


Q ss_pred             hhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhc-------------------CChhh-----------hhHHHhcc
Q 021317          125 SPILDATAVPPLINLLKDCKKYSKFAEKATALLEILS-------------------SSEEG-----------RIAITNSD  174 (314)
Q Consensus       125 ~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~-------------------~~~~~-----------~~~i~~~~  174 (314)
                      ..+.+. .+|.|-.++.+.+.. .++..-+..|..|+                   .++.+           ..++.  .
T Consensus       502 niF~eY-lfP~L~~l~~d~~~~-~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~--~  577 (1431)
T KOG1240|consen  502 NIFPEY-LFPHLNHLLNDSSAQ-IVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALH--H  577 (1431)
T ss_pred             hhhHhh-hhhhhHhhhccCccc-eehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHH--H
Confidence            333343 778888888774221 22211111111111                   11111           11111  1


Q ss_pred             CCHH-HHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhh
Q 021317          175 GGIL-TLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKR  253 (314)
Q Consensus       175 g~v~-~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~  253 (314)
                       .|. ..+.++.+.++-++..-+..+.-||..-.   |+. -+.=.++.|+.++.+.|...|-   +...++..-+-  .
T Consensus       578 -~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFG---k~k-sND~iLshLiTfLNDkDw~LR~---aFfdsI~gvsi--~  647 (1431)
T KOG1240|consen  578 -TVEQMVSSLLSDSPPIVKRALLESIIPLCVFFG---KEK-SNDVILSHLITFLNDKDWRLRG---AFFDSIVGVSI--F  647 (1431)
T ss_pred             -HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhh---hcc-cccchHHHHHHHhcCccHHHHH---HHHhhccceEE--E
Confidence             233 33344444455666666666666664321   110 0112678888999988877773   33334432221  1


Q ss_pred             cchh-hhHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHHH
Q 021317          254 LSSS-VLEKIVYDIAAR-VDGADKAAETAKRLLQDMVQRS  291 (314)
Q Consensus       254 ~~~~-~~~~lv~~l~~~-~~~~~~~~~~A~~~L~~l~~~s  291 (314)
                      ++-. +-+-+++.|.+. .|+++.+-..|-..|.-|.+..
T Consensus       648 VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~  687 (1431)
T KOG1240|consen  648 VGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLG  687 (1431)
T ss_pred             EeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhc
Confidence            1111 233344444433 4777778899999998888754

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=93.13  E-value=2.9  Score=37.35  Aligned_cols=170  Identities=17%  Similarity=0.097  Sum_probs=105.5

Q ss_pred             CCcHHHH-HHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC--CCch
Q 021317           49 GAIPPLV-ELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCK--ENSS  125 (314)
Q Consensus        49 g~v~~Lv-~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~--~~~~  125 (314)
                      +.+..|+ .-+++.++.+|+.|+.+|+-.+..+.   .+. ...++.+...+..+++.++..|+.+|..+....  +.-.
T Consensus        26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~---~~a-~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~  101 (298)
T PF12719_consen   26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK---ELA-KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFD  101 (298)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh---HHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhcc
Confidence            4444444 77789999999999999999887654   111 234677788887789999999999999987321  1111


Q ss_pred             -------hhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhc----CCHHHHHH
Q 021317          126 -------PILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVED----GSLVSTQH  194 (314)
Q Consensus       126 -------~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~----~~~~~~~~  194 (314)
                             .......+..+.+.+.+.++  +++..+...++.|-.......    ....+..|+-+--+    ++..++..
T Consensus       102 ~~~~~~~~~~~~~l~~~l~~~l~~~~~--~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ~  175 (298)
T PF12719_consen  102 SESDNDESVDSKSLLKILTKFLDSENP--ELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQC  175 (298)
T ss_pred             chhccCccchHhHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence                   12224566777777777633  677777777776544432221    02233344333322    33566666


Q ss_pred             HHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcC
Q 021317          195 AVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEG  230 (314)
Q Consensus       195 A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~  230 (314)
                      -...+-..|...+ +. +..+....++.+-.+.+..
T Consensus       176 L~~Ffp~y~~s~~-~~-Q~~l~~~f~~~l~~~~~~~  209 (298)
T PF12719_consen  176 LSVFFPVYASSSP-EN-QERLAEAFLPTLRTLSNAP  209 (298)
T ss_pred             HHHHHHHHHcCCH-HH-HHHHHHHHHHHHHHHHhCc
Confidence            6666666777664 33 4555556677777766543

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=93.01  E-value=3.6  Score=39.88  Aligned_cols=188  Identities=19%  Similarity=0.226  Sum_probs=101.6

Q ss_pred             cCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCC-hhhhhHHHhccCCHHH
Q 021317          101 SGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRIAITNSDGGILT  179 (314)
Q Consensus       101 ~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~v~~  179 (314)
                      .+++..+.-|+..|......-+.    ....++..+++++.+.+.  .++..|..-|..+|.+ ++....++      ..
T Consensus        33 kg~~k~K~Laaq~I~kffk~FP~----l~~~Ai~a~~DLcEDed~--~iR~~aik~lp~~ck~~~~~v~kva------Dv  100 (556)
T PF05918_consen   33 KGSPKEKRLAAQFIPKFFKHFPD----LQEEAINAQLDLCEDEDV--QIRKQAIKGLPQLCKDNPEHVSKVA------DV  100 (556)
T ss_dssp             GS-HHHHHHHHHHHHHHHCC-GG----GHHHHHHHHHHHHT-SSH--HHHHHHHHHGGGG--T--T-HHHHH------HH
T ss_pred             cCCHHHHHHHHHHHHHHHhhChh----hHHHHHHHHHHHHhcccH--HHHHHHHHhHHHHHHhHHHHHhHHH------HH
Confidence            35788888888888877744322    123467788999988643  8889999999999987 45555555      48


Q ss_pred             HHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhh---cCCHHHHHHHHHHHH-HhhcCCch----
Q 021317          180 LVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTV---EGTFEAQERARTLLD-LLRDTPQE----  251 (314)
Q Consensus       180 Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~---~~~~~~~~~A~~~L~-~l~~~~~~----  251 (314)
                      |+++|.++++.-...+-.+|..|-..++.         +.+..|...+.   .+++.+++.+..-|. .+-.-..+    
T Consensus       101 L~QlL~tdd~~E~~~v~~sL~~ll~~d~k---------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p  171 (556)
T PF05918_consen  101 LVQLLQTDDPVELDAVKNSLMSLLKQDPK---------GTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTP  171 (556)
T ss_dssp             HHHHTT---HHHHHHHHHHHHHHHHH-HH---------HHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS--
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHhcCcH---------HHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhc
Confidence            99999988766666666666666555432         24455555443   578888998886553 33322211    


Q ss_pred             -hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH----HHH---HHhHHHHHHHhhhcCCCCCC
Q 021317          252 -KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQ----RSM---ELSMTRIQQRAASSAPSKIP  312 (314)
Q Consensus       252 -~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~----~s~---~~~~~~~~~~~~~~~~~~~~  312 (314)
                       +.++.-+++.+ ..+.  .|-+...=+..-.+|+.+.-    .++   ..-+..+...|.++.|-+.+
T Consensus       172 ~~E~e~~i~~~i-kkvL--~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~s  237 (556)
T PF05918_consen  172 QKEMEEFIVDEI-KKVL--QDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPS  237 (556)
T ss_dssp             -HHHHHHHHHHH-HHHC--TT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SS
T ss_pred             hHHHHHHHHHHH-HHHH--HhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCc
Confidence             11222222222 2222  23344444556666666653    123   23355566677777765443

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=92.98  E-value=7  Score=35.96  Aligned_cols=199  Identities=18%  Similarity=0.166  Sum_probs=111.2

Q ss_pred             cCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcC-CCHHHHHHHHHHHHH-hccCCCChhHHhhcCcHHHHH
Q 021317           19 YFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKF-QNGTLRELAAAAILT-LSAAAPNKPAIAASGAAPLLV   96 (314)
Q Consensus        19 ~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~-La~~~~~~~~i~~~g~l~~Lv   96 (314)
                      +.....|..++..|.-=..+++.+..+...|.+..+++.+.. ++..+...++.++.. ++.+..+-..+.+.+.+..++
T Consensus        33 ~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~~~~~~~~ll~  112 (361)
T PF07814_consen   33 SSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLLLDRDSLRLLL  112 (361)
T ss_pred             CCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhhhchhHHHHHH
Confidence            344567777777777333578999999999999999999943 333244444444444 443333333333444555555


Q ss_pred             HHhc--cC-------C-----------------------------------HHHHHHHHHHHHHhcC-------------
Q 021317           97 QILH--SG-------S-----------------------------------VQGRVDAVTALHYLST-------------  119 (314)
Q Consensus        97 ~lL~--~~-------~-----------------------------------~~~~~~a~~~L~nLs~-------------  119 (314)
                      +++.  ..       +                                   ..-+.-|..+|..++.             
T Consensus       113 ~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l~~~~~~~~~~~~t~~  192 (361)
T PF07814_consen  113 KLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESLVRSLREAGDLSETSS  192 (361)
T ss_pred             HHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHHHHHHHHHHhhcccchhhhh
Confidence            5555  00       0                                   0112223333333320             


Q ss_pred             --CCCCchhhhhcCCcHHHHHHhhc----cC-----C-----chHHHHHHHHHHHHhcCC-hhhhhHHHhcc-CCHHHHH
Q 021317          120 --CKENSSPILDATAVPPLINLLKD----CK-----K-----YSKFAEKATALLEILSSS-EEGRIAITNSD-GGILTLV  181 (314)
Q Consensus       120 --~~~~~~~i~~~g~i~~Lv~lL~~----~~-----~-----~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~-g~v~~Lv  181 (314)
                        .+.-|+.+...|++..+++++.+    ..     +     .......++.+|-+.+.. .+++....... +.++.+.
T Consensus       193 ~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~nq~~l~~~~~~~l~~~~  272 (361)
T PF07814_consen  193 RAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEENQSYLLSHRSSLLPQLL  272 (361)
T ss_pred             hccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccchHHHHHhcccchHHHH
Confidence              11235556667889999999862    10     0     012346788888887655 45665554322 2333322


Q ss_pred             H-Hhh---cCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcC
Q 021317          182 E-TVE---DGSLVSTQHAVGALLSLCQSCRDKYRQLILKEG  218 (314)
Q Consensus       182 ~-ll~---~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g  218 (314)
                      . ++.   .........+++.+.|++.+++ +..+.+...+
T Consensus       273 ~~l~~~~~~~~~~~l~~~lrlllNlTn~n~-~~c~~~~s~~  312 (361)
T PF07814_consen  273 STLLRQCDDQVIQLLLLALRLLLNLTNNNP-SACEEFASPK  312 (361)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHeeeCCCCCc-cchHhhhhhH
Confidence            2 222   2234456789999999998886 4555565543

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=92.98  E-value=0.58  Score=39.94  Aligned_cols=83  Identities=28%  Similarity=0.264  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHhcCCCCCchhhhhcCCcHH-------HHHHhhccCCchHHHHHHHHHHHHhcCChhh-hhHHHhccCC
Q 021317          105 QGRVDAVTALHYLSTCKENSSPILDATAVPP-------LINLLKDCKKYSKFAEKATALLEILSSSEEG-RIAITNSDGG  176 (314)
Q Consensus       105 ~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~-------Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~-~~~i~~~~g~  176 (314)
                      .-+..|+.+|+.|+..+.|-+.+...+-...       |++++.. ..++-.++-|..+|++|+..++. ...+..+.++
T Consensus       139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~-~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~  217 (257)
T PF12031_consen  139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGM-REDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC  217 (257)
T ss_pred             CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence            3478999999999999999999988664443       3444444 34457889999999999988654 3345557899


Q ss_pred             HHHHHHHhhcCC
Q 021317          177 ILTLVETVEDGS  188 (314)
Q Consensus       177 v~~Lv~ll~~~~  188 (314)
                      |..|+.++.+..
T Consensus       218 i~~Li~FiE~a~  229 (257)
T PF12031_consen  218 ISHLIAFIEDAE  229 (257)
T ss_pred             HHHHHHHHHHHH
Confidence            999999997643

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=92.93  E-value=0.34  Score=39.85  Aligned_cols=92  Identities=14%  Similarity=0.086  Sum_probs=67.2

Q ss_pred             HHHHHhH-hhccCc-hhHHHHHhcCCcHHHHHHhcC---------CCHHHHHHHHHHHHHhccCCCChhHHh-hcCcHHH
Q 021317           27 LNLMGPL-WQLSKT-RNKVKIATAGAIPPLVELLKF---------QNGTLRELAAAAILTLSAAAPNKPAIA-ASGAAPL   94 (314)
Q Consensus        27 ~a~~al~-l~~~~~-~~~~~l~~~g~v~~Lv~lL~~---------~~~~~~~~a~~~L~~La~~~~~~~~i~-~~g~l~~   94 (314)
                      ..+..|. .+...+ .--..|++.||+..|+++|..         .+.+....++.+|..|..+..+...+. ..+++..
T Consensus        83 ~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~  162 (187)
T PF06371_consen   83 KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNL  162 (187)
T ss_dssp             HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHH
T ss_pred             HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHH
Confidence            4444555 333333 344677788999999998832         245678888999999988876666665 6899999


Q ss_pred             HHHHhccCCHHHHHHHHHHHHHhc
Q 021317           95 LVQILHSGSVQGRVDAVTALHYLS  118 (314)
Q Consensus        95 Lv~lL~~~~~~~~~~a~~~L~nLs  118 (314)
                      ++..|.+++..++..++..|..+|
T Consensus       163 i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  163 IALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             HHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999998775

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=92.84  E-value=1.2  Score=37.64  Aligned_cols=143  Identities=17%  Similarity=0.117  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhh---ccCCchHHHHHHHHHHHHhcCChh--hhhHHHhccCCHHH
Q 021317          105 QGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLK---DCKKYSKFAEKATALLEILSSSEE--GRIAITNSDGGILT  179 (314)
Q Consensus       105 ~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~---~~~~~~~~~~~a~~~L~~L~~~~~--~~~~i~~~~g~v~~  179 (314)
                      .-..+++..|..+++.++.|..++++.+--.+-..|.   +..+-+-++-.+++++..|..+++  ....+. ...+||.
T Consensus       115 nRvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLl-tTeivPL  193 (315)
T COG5209         115 NRVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLL-TTEIVPL  193 (315)
T ss_pred             hHHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHH-hhhHHHH
Confidence            3457788889999999999999999765444444443   333333456778999999887743  345555 6889999


Q ss_pred             HHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHH----Hc----CChHHHHH-hhhcCCHHHHHHHHHHHHHhhcCCc
Q 021317          180 LVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLIL----KE----GAIPGLLR-LTVEGTFEAQERARTLLDLLRDTPQ  250 (314)
Q Consensus       180 Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~----~~----g~v~~Lv~-ll~~~~~~~~~~A~~~L~~l~~~~~  250 (314)
                      +++++..+++.-+..|..++..+-.++  ..-+.+.    +.    ..+..++. +...++.+.-+++.++--.|+..+.
T Consensus       194 cLrIme~gSElSktvaifI~qkil~dD--vGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~  271 (315)
T COG5209         194 CLRIMELGSELSKTVAIFIFQKILGDD--VGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPH  271 (315)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHh
Confidence            999999999888888998888776554  2222222    21    23333443 4455778888888888777877664

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=92.79  E-value=0.56  Score=39.60  Aligned_cols=144  Identities=17%  Similarity=0.068  Sum_probs=93.3

Q ss_pred             HHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcC-----CCHHHHHHHHHHHHHhccCCCC--hhHHhhcCcHHHHHH
Q 021317           25 RRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKF-----QNGTLRELAAAAILTLSAAAPN--KPAIAASGAAPLLVQ   97 (314)
Q Consensus        25 ~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~-----~~~~~~~~a~~~L~~La~~~~~--~~~i~~~g~l~~Lv~   97 (314)
                      ...|+..|.-...+++.|..+.++.+--.+-.+|..     +.+..|..++.+++.|..+++.  -..+....++|.+++
T Consensus       117 vcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr  196 (315)
T COG5209         117 VCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR  196 (315)
T ss_pred             HHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence            334444444556679999999888775555566632     2345788889999999887653  344557899999999


Q ss_pred             HhccCCHHHHHHHHHHHHHhcCCCCCchhhhhc----CCc----HHHHHHh-hccCCchHHHHHHHHHHHHhcCChhhhh
Q 021317           98 ILHSGSVQGRVDAVTALHYLSTCKENSSPILDA----TAV----PPLINLL-KDCKKYSKFAEKATALLEILSSSEEGRI  168 (314)
Q Consensus        98 lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~----g~i----~~Lv~lL-~~~~~~~~~~~~a~~~L~~L~~~~~~~~  168 (314)
                      +++.+++-.+..|+.++..+..++..-..+-+.    -++    ..++.-+ +.+.  .++...+.++.-.||..+..|.
T Consensus       197 Ime~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~--~RLlKh~iRcYlRLsd~p~aR~  274 (315)
T COG5209         197 IMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGS--TRLLKHAIRCYLRLSDKPHARA  274 (315)
T ss_pred             HHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--hhHHHHHHHHheeecCCHhHHH
Confidence            999999999999999998888777665554431    112    2222222 2222  2555566666555665555554


Q ss_pred             HH
Q 021317          169 AI  170 (314)
Q Consensus       169 ~i  170 (314)
                      .+
T Consensus       275 lL  276 (315)
T COG5209         275 LL  276 (315)
T ss_pred             HH
Confidence            43

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=92.74  E-value=0.84  Score=39.96  Aligned_cols=173  Identities=16%  Similarity=0.052  Sum_probs=102.2

Q ss_pred             HHHHHHHHHhHhhccCchhHHHHHhcC--CcHHHHHHhcC----CCHHHHHHHHHHHHHhccCCCChhHHhhcC--cHHH
Q 021317           23 YARRLNLMGPLWQLSKTRNKVKIATAG--AIPPLVELLKF----QNGTLRELAAAAILTLSAAAPNKPAIAASG--AAPL   94 (314)
Q Consensus        23 ~~~~~a~~al~l~~~~~~~~~~l~~~g--~v~~Lv~lL~~----~~~~~~~~a~~~L~~La~~~~~~~~i~~~g--~l~~   94 (314)
                      +.+--++..++++.-++..-..+...+  ....+..++..    ..+..+.-++++++|+-.++.++..+.+..  .+..
T Consensus        78 ~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~  157 (268)
T PF08324_consen   78 ESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILE  157 (268)
T ss_dssp             CC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHH
T ss_pred             ccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHH
Confidence            445566666665555666555555433  23444444432    367788899999999999999888887543  3444


Q ss_pred             HHHHhccC----CHHHHHHHHHHHHHhcCC-CCCc-hhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhh
Q 021317           95 LVQILHSG----SVQGRVDAVTALHYLSTC-KENS-SPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRI  168 (314)
Q Consensus        95 Lv~lL~~~----~~~~~~~a~~~L~nLs~~-~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~  168 (314)
                      .+..+...    +..++..++..+.|++.. ...+ ..=.....+..+++.+.....+++....++-++.+|...++...
T Consensus       158 ~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~  237 (268)
T PF08324_consen  158 LLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAK  237 (268)
T ss_dssp             HCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHH
T ss_pred             HHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHH
Confidence            44444444    688999999999999842 1111 11111224555556444333345777888999999997777766


Q ss_pred             HHHhccCCHHHHHHHh-hcCCHHHHHHH
Q 021317          169 AITNSDGGILTLVETV-EDGSLVSTQHA  195 (314)
Q Consensus       169 ~i~~~~g~v~~Lv~ll-~~~~~~~~~~A  195 (314)
                      ......|+-..+-..- ...++.+++.+
T Consensus       238 ~~~~~l~~~~~~~~~~~~~~e~ri~~v~  265 (268)
T PF08324_consen  238 QLAKSLDVKSVLSKKANKSKEPRIKEVA  265 (268)
T ss_dssp             HHCCCCTHHHHHHHHHHHTTSHHHHHHH
T ss_pred             HHHHHcChHHHHHHHHhcccchHHHHHh
Confidence            6663233333333332 22345555544

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=92.62  E-value=2  Score=38.99  Aligned_cols=221  Identities=11%  Similarity=0.044  Sum_probs=147.2

Q ss_pred             HHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC-CChh-----HHh-h-cCcHHHHHHHhccCCHHHHHHHHHHHH
Q 021317           44 KIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA-PNKP-----AIA-A-SGAAPLLVQILHSGSVQGRVDAVTALH  115 (314)
Q Consensus        44 ~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~~~~-----~i~-~-~g~l~~Lv~lL~~~~~~~~~~a~~~L~  115 (314)
                      .+...|.+..|+..|..-+-+.+..++....++-... +++.     .+. . ...+..|+..-+  ++++-..+...|+
T Consensus        71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~mlR  148 (335)
T PF08569_consen   71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDMLR  148 (335)
T ss_dssp             HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHHHH
Confidence            4456788899999998888899999999999877643 3332     232 2 334444444433  4556667778888


Q ss_pred             HhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHH-hcCChhhhhHHHhc--cCCHHHHHHHhhcCCHHHH
Q 021317          116 YLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEI-LSSSEEGRIAITNS--DGGILTLVETVEDGSLVST  192 (314)
Q Consensus       116 nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~-L~~~~~~~~~i~~~--~g~v~~Lv~ll~~~~~~~~  192 (314)
                      .....+.....+.....+..+.+..+.+  ..++...|..++.. |..+...-......  ...+...-.+|.+++--++
T Consensus       149 ec~k~e~l~~~iL~~~~f~~ff~~~~~~--~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk  226 (335)
T PF08569_consen  149 ECIKHESLAKIILYSECFWKFFKYVQLP--NFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTK  226 (335)
T ss_dssp             HHTTSHHHHHHHHTSGGGGGHHHHTTSS--SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred             HHHhhHHHHHHHhCcHHHHHHHHHhcCC--ccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence            8888887777888877888888888775  34777788888876 45655554444421  1345677788888898899


Q ss_pred             HHHHHHHHHhhccCcH-HHHHHHH-HcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCch--hhcc--hhhhHHHHHHH
Q 021317          193 QHAVGALLSLCQSCRD-KYRQLIL-KEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE--KRLS--SSVLEKIVYDI  266 (314)
Q Consensus       193 ~~A~~~L~~L~~~~~~-~~~~~i~-~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~--~~~~--~~~~~~lv~~l  266 (314)
                      ..++..|..|-.+..+ ......+ +..-+..++.++++.+..+|-.|.-+..-+...+..  ++..  ..=.+.++..+
T Consensus       227 rqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~fl  306 (335)
T PF08569_consen  227 RQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLRFL  306 (335)
T ss_dssp             HHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHHHH
T ss_pred             hhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHH
Confidence            9999999998766433 2222333 345688888999999999999999999888766642  2222  22344666666


Q ss_pred             hh
Q 021317          267 AA  268 (314)
Q Consensus       267 ~~  268 (314)
                      ..
T Consensus       307 ~~  308 (335)
T PF08569_consen  307 KD  308 (335)
T ss_dssp             HT
T ss_pred             Hh
Confidence            63

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=92.20  E-value=0.53  Score=32.45  Aligned_cols=67  Identities=15%  Similarity=0.177  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccC
Q 021317          107 RVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDG  175 (314)
Q Consensus       107 ~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g  175 (314)
                      ++.|++++.+++..+.....+.+.++++.++++....+. ..++-.|.-+|.-++...+..+.+- +.|
T Consensus         4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v-~siRGT~fy~Lglis~T~~G~~~L~-~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPV-LSIRGTCFYVLGLISSTEEGAEILD-ELG   70 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCc-cchHHHHHHHHHHHhCCHHHHHHHH-HcC
Confidence            478999999999998888888888999999999988644 3778888888988899888887775 454

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=92.19  E-value=4.2  Score=37.69  Aligned_cols=81  Identities=10%  Similarity=0.062  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhc-CC---CHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHH
Q 021317           22 GYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLK-FQ---NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLV   96 (314)
Q Consensus        22 ~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~-~~---~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv   96 (314)
                      +.+--.|+..+. .....|..-..+.+.|.++.+++.+. .+   +.++...--.+|..|+.+..+.+.+.+.+.++.++
T Consensus       123 ~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f  202 (379)
T PF06025_consen  123 PSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLF  202 (379)
T ss_pred             hHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHH
Confidence            455566666677 77778888888889999999999887 43   56777777788999999999999999999999999


Q ss_pred             HHhccC
Q 021317           97 QILHSG  102 (314)
Q Consensus        97 ~lL~~~  102 (314)
                      +++.++
T Consensus       203 ~if~s~  208 (379)
T PF06025_consen  203 EIFTSP  208 (379)
T ss_pred             HHhCCH
Confidence            887653

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=92.19  E-value=0.94  Score=31.21  Aligned_cols=67  Identities=13%  Similarity=0.039  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhc-CCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCC
Q 021317          150 AEKATALLEILSSSEEGRIAITNSDGGILTLVETVED-GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGA  219 (314)
Q Consensus       150 ~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~-~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~  219 (314)
                      .+.++.++.|+++.+.....+- +.+.++.++++..+ +...+|--|..+|.-++...  +..+.+.+.|.
T Consensus         4 lKaaLWaighIgss~~G~~lL~-~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~--~G~~~L~~~gW   71 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLD-ESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE--EGAEILDELGW   71 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHh-hcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH--HHHHHHHHcCC
Confidence            3578999999999888887777 68999999999975 45889999999999999764  56777777664

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=92.07  E-value=6.3  Score=39.78  Aligned_cols=220  Identities=14%  Similarity=0.041  Sum_probs=115.1

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhccC-CCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcC
Q 021317           53 PLVELLKFQNGTLRELAAAAILTLSAA-APNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDAT  131 (314)
Q Consensus        53 ~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g  131 (314)
                      .++..+++..+.++..-...+..+-.. +..-.......-+|.++.+-.+...+++......+.-++....  ..+.+.-
T Consensus       441 ~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~--~~~~~~~  518 (759)
T KOG0211|consen  441 LLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG--VEFFDEK  518 (759)
T ss_pred             hhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh--hHHhhHH
Confidence            334444444555555444433332221 2222333344556666666555566777777777776664432  2222221


Q ss_pred             CcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHH
Q 021317          132 AVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYR  211 (314)
Q Consensus       132 ~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~  211 (314)
                      .-+.+...+.+.  .-.++++|+..+..++.... .....  .-.++.++.+..+++-..|...+.++..++.--    -
T Consensus       519 ~~~l~~~~l~d~--v~~Ir~~aa~~l~~l~~~~G-~~w~~--~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~----g  589 (759)
T KOG0211|consen  519 LAELLRTWLPDH--VYSIREAAARNLPALVETFG-SEWAR--LEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVL----G  589 (759)
T ss_pred             HHHHHHhhhhhh--HHHHHHHHHHHhHHHHHHhC-cchhH--HHhhHHHHHHhcCcccchhhHHHHHHHHHHHHh----c
Confidence            122222222221  12566777777766665433 22222  235677777776665556666666666555322    2


Q ss_pred             HHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 021317          212 QLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQD  286 (314)
Q Consensus       212 ~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~  286 (314)
                      ..+.....++.+.++..+..+.+|-+++..|..+-..-.....+. .+.++...|..  |.+.+.+..|..+...
T Consensus       590 ~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~-~v~pll~~L~~--d~~~dvr~~a~~a~~~  661 (759)
T KOG0211|consen  590 QEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDE-EVLPLLETLSS--DQELDVRYRAILAFGS  661 (759)
T ss_pred             cHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHH-HHHHHHHHhcc--CcccchhHHHHHHHHH
Confidence            334445678889999999999999999999988765433222222 22234344442  3333444444444333

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.06  E-value=1.6  Score=41.11  Aligned_cols=153  Identities=13%  Similarity=0.051  Sum_probs=91.8

Q ss_pred             CcHHHHHHHh----ccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChh
Q 021317           90 GAAPLLVQIL----HSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEE  165 (314)
Q Consensus        90 g~l~~Lv~lL----~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~  165 (314)
                      |.+..++..+    .+++...+..|+..|.|.+.....+..--..-.+..++.-|-++.. .++.-.++.+|..+..-..
T Consensus       254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~-~~V~leam~~Lt~v~~~~~  332 (533)
T KOG2032|consen  254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLN-EEVQLEAMKCLTMVLEKAS  332 (533)
T ss_pred             ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHhhh
Confidence            4444444443    4567788999999999999763322222222244455555555433 3676667776665443333


Q ss_pred             h---hhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHH--cCChHHHHHhhhcCCHHHHHHHHH
Q 021317          166 G---RIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK--EGAIPGLLRLTVEGTFEAQERART  240 (314)
Q Consensus       166 ~---~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~--~g~v~~Lv~ll~~~~~~~~~~A~~  240 (314)
                      +   ...++   .+.-.+..+.++.+++.+..|...+..|+.......++.+.+  .+...+++-.+.+.+|.+-.++-.
T Consensus       333 ~~~l~~~~l---~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~  409 (533)
T KOG2032|consen  333 NDDLESYLL---NIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRS  409 (533)
T ss_pred             hcchhhhch---hHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHH
Confidence            3   33333   244567778888888888888888777765433344555654  344555666677778877766666


Q ss_pred             HHHHhh
Q 021317          241 LLDLLR  246 (314)
Q Consensus       241 ~L~~l~  246 (314)
                      .++.+.
T Consensus       410 ~~~~c~  415 (533)
T KOG2032|consen  410 ELRTCY  415 (533)
T ss_pred             HHHhcC
Confidence            666553

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.81  E-value=1.4  Score=38.94  Aligned_cols=138  Identities=17%  Similarity=0.187  Sum_probs=88.0

Q ss_pred             cHHHHHHHhccCCHHHHHHHHHHHHHhcC-CCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhh-hh
Q 021317           91 AAPLLVQILHSGSVQGRVDAVTALHYLST-CKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEG-RI  168 (314)
Q Consensus        91 ~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~-~~  168 (314)
                      ++...+..|.+.+.+.+...+..|..|+. .++....... ..|..+++-++..  +..+...|+-++..+.+.-.+ ..
T Consensus        89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNl--RS~VsraA~~t~~difs~ln~~i~  165 (334)
T KOG2933|consen   89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNL--RSAVSRAACMTLADIFSSLNNSID  165 (334)
T ss_pred             HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcCh--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566788888899999999999999984 4433333222 3566666666664  336666677666666544222 22


Q ss_pred             HHHhccCCHHHHHH-Hhhc---CCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHH
Q 021317          169 AITNSDGGILTLVE-TVED---GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDL  244 (314)
Q Consensus       169 ~i~~~~g~v~~Lv~-ll~~---~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~  244 (314)
                      .      ....++. ++..   ++.=+++.|..+|-.+..+-..  .      -+++.|+..+++..++++..++.+..+
T Consensus       166 ~------~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp--~------~~L~~L~~~~~~~n~r~r~~a~~~~~~  231 (334)
T KOG2933|consen  166 Q------ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP--Q------KLLRKLIPILQHSNPRVRAKAALCFSR  231 (334)
T ss_pred             H------HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh--H------HHHHHHHHHHhhhchhhhhhhhccccc
Confidence            2      2223333 3332   3345788888888888866432  1      256777778888999999888776655


Q ss_pred             h
Q 021317          245 L  245 (314)
Q Consensus       245 l  245 (314)
                      +
T Consensus       232 ~  232 (334)
T KOG2933|consen  232 C  232 (334)
T ss_pred             c
Confidence            4

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=91.35  E-value=1.5  Score=38.37  Aligned_cols=158  Identities=20%  Similarity=0.129  Sum_probs=97.6

Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcC--CcHHHHHHhhccC--CchHHHHHHHHHHHHhcCChhhh
Q 021317           92 APLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDAT--AVPPLINLLKDCK--KYSKFAEKATALLEILSSSEEGR  167 (314)
Q Consensus        92 l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g--~i~~Lv~lL~~~~--~~~~~~~~a~~~L~~L~~~~~~~  167 (314)
                      ...+...+...+++-+.-++..++-+..++..-..+...+  ....+..++....  .....+-.++++++|+-.+...+
T Consensus        65 ~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~  144 (268)
T PF08324_consen   65 LILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGR  144 (268)
T ss_dssp             HHHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCH
T ss_pred             HHHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccH
Confidence            4455666666666667788888888877766555554432  3555666665543  33466778999999999999999


Q ss_pred             hHHHhccC-CHHHHHHHhhcC----CHHHHHHHHHHHHHhhccCcHHHH-HHHHHcCChHHHHHhh-hc-CCHHHHHHHH
Q 021317          168 IAITNSDG-GILTLVETVEDG----SLVSTQHAVGALLSLCQSCRDKYR-QLILKEGAIPGLLRLT-VE-GTFEAQERAR  239 (314)
Q Consensus       168 ~~i~~~~g-~v~~Lv~ll~~~----~~~~~~~A~~~L~~L~~~~~~~~~-~~i~~~g~v~~Lv~ll-~~-~~~~~~~~A~  239 (314)
                      ..+....+ .+...+..+...    +..++..++..+.|++-.... .+ ..-.....+..+.+.+ .. .+++....+.
T Consensus       145 ~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~-~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~L  223 (268)
T PF08324_consen  145 QLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHK-NRSDEEWQSELLSSIIEVLSREESDEEALYRLL  223 (268)
T ss_dssp             HHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHH-CTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHH
T ss_pred             HHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHhccccCCHHHHHHHH
Confidence            98885444 344444434333    577888888888998753210 01 0000111344455522 22 5889999999


Q ss_pred             HHHHHhhcCCc
Q 021317          240 TLLDLLRDTPQ  250 (314)
Q Consensus       240 ~~L~~l~~~~~  250 (314)
                      .+|.+|...+.
T Consensus       224 vAlGtL~~~~~  234 (268)
T PF08324_consen  224 VALGTLLSSSD  234 (268)
T ss_dssp             HHHHHHHCCSH
T ss_pred             HHHHHHhccCh
Confidence            99999986553

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=91.13  E-value=13  Score=34.53  Aligned_cols=125  Identities=11%  Similarity=0.081  Sum_probs=88.6

Q ss_pred             CcHHHHHHHhccC---CHHHHHHHHHHHHHhcCCCCCchh-hhhcCCcHHHHHHhh-ccC-CchHHHHHHHHHHHHhcCC
Q 021317           90 GAAPLLVQILHSG---SVQGRVDAVTALHYLSTCKENSSP-ILDATAVPPLINLLK-DCK-KYSKFAEKATALLEILSSS  163 (314)
Q Consensus        90 g~l~~Lv~lL~~~---~~~~~~~a~~~L~nLs~~~~~~~~-i~~~g~i~~Lv~lL~-~~~-~~~~~~~~a~~~L~~L~~~  163 (314)
                      ..+..|..++++.   .+.+-..|+.++..+..+++..-. +.+.|.++.+++.+. .+- +..++....-.++..||-+
T Consensus       106 ~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN  185 (379)
T PF06025_consen  106 SLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLN  185 (379)
T ss_pred             hHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcC
Confidence            3444555556655   467888999999999977776655 456899999999998 432 3345555566778899999


Q ss_pred             hhhhhHHHhccCCHHHHHHHhhcCC-------HHHHHHHHHHHHHhhccCcHHHHHHHHH
Q 021317          164 EEGRIAITNSDGGILTLVETVEDGS-------LVSTQHAVGALLSLCQSCRDKYRQLILK  216 (314)
Q Consensus       164 ~~~~~~i~~~~g~v~~Lv~ll~~~~-------~~~~~~A~~~L~~L~~~~~~~~~~~i~~  216 (314)
                      .++.+.+. +.+.++.+++++.+.+       .+....--..+-.|..+.| ..|..+++
T Consensus       186 ~~Gl~~~~-~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p-~Lk~~i~~  243 (379)
T PF06025_consen  186 NRGLEKVK-SSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHP-SLKPDIID  243 (379)
T ss_pred             HHHHHHHH-hcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCH-HHHHHHHH
Confidence            99999999 6899999999996532       1223334445566777765 66666665

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=90.93  E-value=1.8  Score=37.48  Aligned_cols=95  Identities=22%  Similarity=0.178  Sum_probs=73.9

Q ss_pred             CcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhH
Q 021317           90 GAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIA  169 (314)
Q Consensus        90 g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~  169 (314)
                      ..|-.+++-+..++.-.|..++.+++-|-..          -+|+.|.+.|.+....+-++..|..+|..++.       
T Consensus       187 eaI~al~~~l~~~SalfrhEvAfVfGQl~s~----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~-------  249 (289)
T KOG0567|consen  187 EAINALIDGLADDSALFRHEVAFVFGQLQSP----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIAD-------  249 (289)
T ss_pred             HHHHHHHHhcccchHHHHHHHHHHHhhccch----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC-------
Confidence            3566777777778888888888888766433          38999999999877777788888888877654       


Q ss_pred             HHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcc
Q 021317          170 ITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQS  205 (314)
Q Consensus       170 i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~  205 (314)
                          ..+++.|.+++++..+-+++.|..+|..+-..
T Consensus       250 ----e~~~~vL~e~~~D~~~vv~esc~valdm~eye  281 (289)
T KOG0567|consen  250 ----EDCVEVLKEYLGDEERVVRESCEVALDMLEYE  281 (289)
T ss_pred             ----HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence                45788899999988888888888888765543

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=90.77  E-value=0.33  Score=45.43  Aligned_cols=155  Identities=14%  Similarity=0.032  Sum_probs=89.5

Q ss_pred             cCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC-----CC---ChhHHhhcCcHHHHHHHhc---cCCHHHHHHHHHHHHH
Q 021317           48 AGAIPPLVELLKFQNGTLRELAAAAILTLSAA-----AP---NKPAIAASGAAPLLVQILH---SGSVQGRVDAVTALHY  116 (314)
Q Consensus        48 ~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~-----~~---~~~~i~~~g~l~~Lv~lL~---~~~~~~~~~a~~~L~n  116 (314)
                      ......++..+.+..-..++.++++++|++..     +.   ....+. .--+..+++.-.   -.+.+++.++..+|.|
T Consensus       432 ~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~s-g~ll~~~~~~A~~~~Ad~dkV~~navraLgn  510 (728)
T KOG4535|consen  432 ADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFS-GLLLLKMLRSAIEASADKDKVKSNAVRALGN  510 (728)
T ss_pred             HHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHH-HHHHHHHHHHHHHhhhhhhhhhhHHHHHHhh
Confidence            34445555666555667889999999998862     11   122221 122333333322   2356899999999999


Q ss_pred             hcCCCC-C-c--hhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHh-ccCCHHHHHHHhhc-CCHH
Q 021317          117 LSTCKE-N-S--SPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITN-SDGGILTLVETVED-GSLV  190 (314)
Q Consensus       117 Ls~~~~-~-~--~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~~g~v~~Lv~ll~~-~~~~  190 (314)
                      +.+--+ . .  -.....|.+..+....-.. ...+++.+++-++.||-.++..+-+-.+ ..-..+.|..++.+ .+-+
T Consensus       511 llQvlq~i~~~~~~e~~~~~~~~l~~~v~~~-~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFK  589 (728)
T KOG4535|consen  511 LLQFLQPIEKPTFAEIIEESIQALISTVLTE-AAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFK  589 (728)
T ss_pred             HHHHHHHhhhccHHHHHHHHHHhcccceecc-cccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccce
Confidence            984211 1 1  1111123333332222111 1237889999999999988765322211 12356778887765 4578


Q ss_pred             HHHHHHHHHHHhhc
Q 021317          191 STQHAVGALLSLCQ  204 (314)
Q Consensus       191 ~~~~A~~~L~~L~~  204 (314)
                      +|..|+++|..-..
T Consensus       590 VRi~AA~aL~vp~~  603 (728)
T KOG4535|consen  590 VRIRAAAALSVPGK  603 (728)
T ss_pred             EeehhhhhhcCCCC
Confidence            88899988876554

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=90.47  E-value=22  Score=36.09  Aligned_cols=261  Identities=16%  Similarity=0.144  Sum_probs=126.5

Q ss_pred             CCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHh
Q 021317           20 FEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQIL   99 (314)
Q Consensus        20 ~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL   99 (314)
                      .+++++..+..-+...+....  ......++++.++++..+....+++.|...+.++...-.... =...-..+.+++..
T Consensus       249 ~~~~Vr~~~a~~l~~~a~~~~--~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~-d~~~~~~~~l~~~~  325 (759)
T KOG0211|consen  249 DTPMVRRAVASNLGNIAKVLE--SEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD-DVVKSLTESLVQAV  325 (759)
T ss_pred             cchhhHHHHHhhhHHHHHHHH--HHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch-hhhhhhhHHHHHHh
Confidence            344555554444442221111  155677888999999988888899999888888766311110 12234567777777


Q ss_pred             ccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCc---------------------hHH-HHHHHHHH
Q 021317          100 HSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKY---------------------SKF-AEKATALL  157 (314)
Q Consensus       100 ~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~---------------------~~~-~~~a~~~L  157 (314)
                      .+++..++.........|...-+-  ......-+++...++++...+                     ..+ ....+-.+
T Consensus       326 ~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~  403 (759)
T KOG0211|consen  326 EDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEV  403 (759)
T ss_pred             cChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHH
Confidence            777776666655555444421000  011111122222222111000                     000 00111222


Q ss_pred             HHhcCChh--hhhHHHh----------c----cCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChH
Q 021317          158 EILSSSEE--GRIAITN----------S----DGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIP  221 (314)
Q Consensus       158 ~~L~~~~~--~~~~i~~----------~----~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~  221 (314)
                      ..++.+..  .+.....          .    .-..|.++..+++..+.++.+-...+..+-..++ ...........++
T Consensus       404 ~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~-v~g~~~~s~slLp  482 (759)
T KOG0211|consen  404 QVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVND-VIGISTVSNSLLP  482 (759)
T ss_pred             HHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccC-cccchhhhhhhhh
Confidence            22222211  1111110          0    1124555666666677777777765544433332 2233344445677


Q ss_pred             HHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHH
Q 021317          222 GLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAAR-VDGADKAAETAKRLLQDMVQR  290 (314)
Q Consensus       222 ~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~-~~~~~~~~~~A~~~L~~l~~~  290 (314)
                      .+..+..+..-+++.....-+..++...........    +...+..+ .+....+++.|...|..++..
T Consensus       483 ~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~----~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~  548 (759)
T KOG0211|consen  483 AIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEK----LAELLRTWLPDHVYSIREAAARNLPALVET  548 (759)
T ss_pred             hhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHH----HHHHHHhhhhhhHHHHHHHHHHHhHHHHHH
Confidence            777777666666666666666666553322222222    22222222 233346778888888777744

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=90.45  E-value=12  Score=37.25  Aligned_cols=126  Identities=15%  Similarity=0.090  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccC
Q 021317           65 LRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCK  144 (314)
Q Consensus        65 ~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~  144 (314)
                      +...++..+..+-..+..-. ++ .|.+..+++-.++++..+|..++..|.-++....-...-+-.+....+..-+.+..
T Consensus        62 Il~fla~fv~sl~q~d~e~D-lV-~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Dre  139 (892)
T KOG2025|consen   62 ILSFLARFVESLPQLDKEED-LV-AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDRE  139 (892)
T ss_pred             HHHHHHHHHHhhhccCchhh-HH-HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccC
Confidence            34444444444443322111 22 56777888888899999999999999999875444444444566666666666654


Q ss_pred             CchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhc-CCHHHHHHHHHHH
Q 021317          145 KYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVED-GSLVSTQHAVGAL  199 (314)
Q Consensus       145 ~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~-~~~~~~~~A~~~L  199 (314)
                      +  .++..|.-+|+.+=.++.+-     +..++..+..+++. +++++|..|+..+
T Consensus       140 p--~VRiqAv~aLsrlQ~d~~de-----e~~v~n~l~~liqnDpS~EVRRaaLsnI  188 (892)
T KOG2025|consen  140 P--NVRIQAVLALSRLQGDPKDE-----ECPVVNLLKDLIQNDPSDEVRRAALSNI  188 (892)
T ss_pred             c--hHHHHHHHHHHHHhcCCCCC-----cccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence            4  67778888887765432211     22355577888875 5688888776443

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=90.39  E-value=1.5  Score=45.30  Aligned_cols=129  Identities=16%  Similarity=0.143  Sum_probs=95.7

Q ss_pred             cCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhc-CCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHH
Q 021317           19 YFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLK-FQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLV   96 (314)
Q Consensus        19 ~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~-~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv   96 (314)
                      .++|++|..|..||. +..-+.+    +++ --.|.|+..+. ++++-+|.+++.+++.++..-.+-   + .-.-+.|-
T Consensus       934 ~sdp~Lq~AAtLaL~klM~iSa~----fce-s~l~llftimeksp~p~IRsN~VvalgDlav~fpnl---i-e~~T~~Ly 1004 (1251)
T KOG0414|consen  934 FSDPELQAAATLALGKLMCISAE----FCE-SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNL---I-EPWTEHLY 1004 (1251)
T ss_pred             CCCHHHHHHHHHHHHHHhhhhHH----HHH-HHHHHHHHHHhcCCCceeeecchheccchhhhcccc---c-chhhHHHH
Confidence            356999999999998 6665533    333 23688999997 889999999999999998742221   1 22345677


Q ss_pred             HHhccCCHHHHHHHHHHHHHhcCCCCCchhhhh-cCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCC
Q 021317           97 QILHSGSVQGRVDAVTALHYLSTCKENSSPILD-ATAVPPLINLLKDCKKYSKFAEKATALLEILSSS  163 (314)
Q Consensus        97 ~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~  163 (314)
                      ..|.+.++.+|..|.-+|.+|-.++     +++ .|-+..+..++.+++.  .+...|-.....|+.-
T Consensus      1005 ~rL~D~~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~~~--~IsdlAk~FF~Els~k 1065 (1251)
T KOG0414|consen 1005 RRLRDESPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDPNA--EISDLAKSFFKELSSK 1065 (1251)
T ss_pred             HHhcCccHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCCcH--HHHHHHHHHHHHhhhc
Confidence            8889999999999999999998654     333 6888888999988654  7777676666655543

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=90.35  E-value=1.3  Score=37.79  Aligned_cols=84  Identities=23%  Similarity=0.150  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHhcCChhhhhHHHhccCC-------HHHHHHHhhc-CCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChH
Q 021317          150 AEKATALLEILSSSEEGRIAITNSDGG-------ILTLVETVED-GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIP  221 (314)
Q Consensus       150 ~~~a~~~L~~L~~~~~~~~~i~~~~g~-------v~~Lv~ll~~-~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~  221 (314)
                      +..|+.+|+.|+..+.|-.-+. ..+-       +..|++++.. ++.-.||-|+..|.+||..+....|..-.+.+.|.
T Consensus       141 qrlaLEaLcKLsV~e~NVDliL-aTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~  219 (257)
T PF12031_consen  141 QRLALEALCKLSVIENNVDLIL-ATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCIS  219 (257)
T ss_pred             HHHHHHHHHHhheeccCcceee-eCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHH
Confidence            5679999999999888877666 3444       3455555543 56788999999999999987544444445689999


Q ss_pred             HHHHhhhcCCHHH
Q 021317          222 GLLRLTVEGTFEA  234 (314)
Q Consensus       222 ~Lv~ll~~~~~~~  234 (314)
                      .|+.++.+.+...
T Consensus       220 ~Li~FiE~a~~~~  232 (257)
T PF12031_consen  220 HLIAFIEDAEQNA  232 (257)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998765433

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=89.91  E-value=14  Score=34.89  Aligned_cols=170  Identities=13%  Similarity=0.083  Sum_probs=97.1

Q ss_pred             CHHHHHHHHHHHHHhccC-CCChhHHhhcCcHHHHHHHhcc-CCHHHHHHHHHHHHHhcCCCCCchhhhh--cCCcHHHH
Q 021317           62 NGTLRELAAAAILTLSAA-APNKPAIAASGAAPLLVQILHS-GSVQGRVDAVTALHYLSTCKENSSPILD--ATAVPPLI  137 (314)
Q Consensus        62 ~~~~~~~a~~~L~~La~~-~~~~~~i~~~g~l~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~~~~~i~~--~g~i~~Lv  137 (314)
                      ..+-++.|..-|..+... ...-+.=.-...+..+++.|.+ .+...+..|+++|..++.+...+  +.+  .=++..++
T Consensus       300 ~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~--l~DstE~ai~K~L  377 (516)
T KOG2956|consen  300 RASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPAR--LFDSTEIAICKVL  377 (516)
T ss_pred             chhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHh--hhchHHHHHHHHH
Confidence            344556666655554432 2222222223456677888888 67888999999999999765322  222  22444555


Q ss_pred             HHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHH-
Q 021317          138 NLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK-  216 (314)
Q Consensus       138 ~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~-  216 (314)
                      +.-.+..+. -+..++=.++.-++++..-+.        |..+..++.+.+....-.++..+-.++..-+   ++.+.. 
T Consensus       378 eaa~ds~~~-v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~---~EeL~~l  445 (516)
T KOG2956|consen  378 EAAKDSQDE-VMRVAEEDCLTTLASHLPLQC--------IVNISPLILTADEPRAVAVIKMLTKLFERLS---AEELLNL  445 (516)
T ss_pred             HHHhCCchh-HHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcC---HHHHHHh
Confidence            554444331 222333334444555544332        2233344444444444445556666665432   344443 


Q ss_pred             -cCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 021317          217 -EGAIPGLLRLTVEGTFEAQERARTLLDLL  245 (314)
Q Consensus       217 -~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l  245 (314)
                       ....|.+++--.+.+..+|+.|+.+|-.+
T Consensus       446 l~diaP~~iqay~S~SS~VRKtaVfCLVam  475 (516)
T KOG2956|consen  446 LPDIAPCVIQAYDSTSSTVRKTAVFCLVAM  475 (516)
T ss_pred             hhhhhhHHHHHhcCchHHhhhhHHHhHHHH
Confidence             56889999988888999999999887665

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.80  E-value=18  Score=39.01  Aligned_cols=236  Identities=15%  Similarity=0.085  Sum_probs=116.5

Q ss_pred             cccCCCcceeeccccCCHHHHHHHHHHhH-hhccCchhHHHHHh--cCCcHHHHHHhcCCCHHHHHHH---HHHHHHhcc
Q 021317            5 CWESPRGVEVFMETYFEGYARRLNLMGPL-WQLSKTRNKVKIAT--AGAIPPLVELLKFQNGTLRELA---AAAILTLSA   78 (314)
Q Consensus         5 ~~~~~~~~~v~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~--~g~v~~Lv~lL~~~~~~~~~~a---~~~L~~La~   78 (314)
                      +||=-+-+++. +.+....+|+.++.||. +..+.+...  +.+  .-.+..+.+.+++-.+.+|+.|   +.+|..|+.
T Consensus      1037 ~neIl~eLL~~-lt~kewRVReasclAL~dLl~g~~~~~--~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~v 1113 (1702)
T KOG0915|consen 1037 LNEILDELLVN-LTSKEWRVREASCLALADLLQGRPFDQ--VKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCV 1113 (1702)
T ss_pred             HHHHHHHHHHh-ccchhHHHHHHHHHHHHHHHcCCChHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34433333333 46777899999999999 776654422  222  2345556666666566777655   445554443


Q ss_pred             C--CC-C--hhHHhhcCcHHHHHHH--hccCCHHHHHHHHHHHHHhcCCCCC--chhhhhcCCcHHHHHHhhccCCchHH
Q 021317           79 A--AP-N--KPAIAASGAAPLLVQI--LHSGSVQGRVDAVTALHYLSTCKEN--SSPILDATAVPPLINLLKDCKKYSKF  149 (314)
Q Consensus        79 ~--~~-~--~~~i~~~g~l~~Lv~l--L~~~~~~~~~~a~~~L~nLs~~~~~--~~~i~~~g~i~~Lv~lL~~~~~~~~~  149 (314)
                      .  +. +  +..=.-..++|.|+.-  + +.-+++|..++.++..|+.+...  +..+  ...||.|++....-.+ ..+
T Consensus      1114 r~~d~~~~~~~~~~l~~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~~--~~LIp~ll~~~s~lE~-~vL 1189 (1702)
T KOG0915|consen 1114 RICDVTNGAKGKEALDIILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPHF--PKLIPLLLNAYSELEP-QVL 1189 (1702)
T ss_pred             hhcccCCcccHHHHHHHHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcchh--hHHHHHHHHHccccch-HHH
Confidence            1  11 1  1111112345554432  2 44578999999999999955432  2222  2356666666654322 111


Q ss_pred             HHHHHHHHHHhcCC--hhhhhHHHhc-------------------cCCHHHHHHHhhcC-CHHHHHHHHHHHHHhhccCc
Q 021317          150 AEKATALLEILSSS--EEGRIAITNS-------------------DGGILTLVETVEDG-SLVSTQHAVGALLSLCQSCR  207 (314)
Q Consensus       150 ~~~a~~~L~~L~~~--~~~~~~i~~~-------------------~g~v~~Lv~ll~~~-~~~~~~~A~~~L~~L~~~~~  207 (314)
                      -..++++ .|....  +.-|..+...                   ...+|.+.++++++ ....+--++..+..|+..-+
T Consensus      1190 nYls~r~-~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~ 1268 (1702)
T KOG0915|consen 1190 NYLSLRL-INIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLG 1268 (1702)
T ss_pred             HHHHHhh-hhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhc
Confidence            1112221 111110  1111111110                   12455666666542 12223334444444442211


Q ss_pred             HHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCc
Q 021317          208 DKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQ  250 (314)
Q Consensus       208 ~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~  250 (314)
                      .+..-.  ....+..+...+++.++.+++..+.+...|.+.+.
T Consensus      1269 ~emtP~--sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss 1309 (1702)
T KOG0915|consen 1269 SEMTPY--SGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSS 1309 (1702)
T ss_pred             cccCcc--hhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCC
Confidence            110000  01245556666777889999888888888876553

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=89.62  E-value=11  Score=38.31  Aligned_cols=197  Identities=12%  Similarity=0.095  Sum_probs=115.0

Q ss_pred             hHHHHHhcCCcHHHH----HHhcCCCHHHHHHHHHHHHHhccCCCChhHH-hhcCcHHHHHHH-hccCCHHHHHHHHHHH
Q 021317           41 NKVKIATAGAIPPLV----ELLKFQNGTLRELAAAAILTLSAAAPNKPAI-AASGAAPLLVQI-LHSGSVQGRVDAVTAL  114 (314)
Q Consensus        41 ~~~~l~~~g~v~~Lv----~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i-~~~g~l~~Lv~l-L~~~~~~~~~~a~~~L  114 (314)
                      +...+-..++.+.+.    .-+.+.+..-+..|+..+........ +... ...|.+..++.. +.+.+..+...++..|
T Consensus       241 ~~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l  319 (815)
T KOG1820|consen  241 NFDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQIL  319 (815)
T ss_pred             ccccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHH
Confidence            333333445444333    33345667777778777777555443 1111 122333344443 2455778888888888


Q ss_pred             HHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHH
Q 021317          115 HYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQH  194 (314)
Q Consensus       115 ~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~  194 (314)
                      .-++..-..-..=...+..+.+++-+.+...  .+++....++-.++.       ...-....+.+..+++++++.++..
T Consensus       320 ~~ia~~lr~~~~~~~~~v~p~lld~lkekk~--~l~d~l~~~~d~~~n-------s~~l~~~~~~I~e~lk~knp~~k~~  390 (815)
T KOG1820|consen  320 ELIAKKLRPLFRKYAKNVFPSLLDRLKEKKS--ELRDALLKALDAILN-------STPLSKMSEAILEALKGKNPQIKGE  390 (815)
T ss_pred             HHHHHhcchhhHHHHHhhcchHHHHhhhccH--HHHHHHHHHHHHHHh-------cccHHHHHHHHHHHhcCCChhhHHH
Confidence            8887432111111124678888888887544  566666555544333       1112335667888899999998888


Q ss_pred             HHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 021317          195 AVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRD  247 (314)
Q Consensus       195 A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~  247 (314)
                      +...+.-............-.-.+.++.++....+.+..+|..|..++.-+-+
T Consensus       391 ~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k  443 (815)
T KOG1820|consen  391 CLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK  443 (815)
T ss_pred             HHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence            77666544432211111111113578888888889999999999988777644

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=89.39  E-value=2  Score=31.43  Aligned_cols=93  Identities=14%  Similarity=0.060  Sum_probs=64.4

Q ss_pred             HHHHHHHHHhH-hhccCchhHHHHH-hcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhc
Q 021317           23 YARRLNLMGPL-WQLSKTRNKVKIA-TAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILH  100 (314)
Q Consensus        23 ~~~~~a~~al~-l~~~~~~~~~~l~-~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~  100 (314)
                      ++|..|+..+. -..++--.-..+. ..+.+..|++-...++....+.++..+..+..++.....+.+-|++..|-++=.
T Consensus         2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~   81 (98)
T PF14726_consen    2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRP   81 (98)
T ss_pred             hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHh
Confidence            57788888766 3332222223333 445556666666766666888899999999999999999999999999777765


Q ss_pred             cCCHHHHHHHHHHHH
Q 021317          101 SGSVQGRVDAVTALH  115 (314)
Q Consensus       101 ~~~~~~~~~a~~~L~  115 (314)
                      ..++..+...-.++.
T Consensus        82 ~~~~~~~~~id~il~   96 (98)
T PF14726_consen   82 NVEPNLQAEIDEILD   96 (98)
T ss_pred             cCCHHHHHHHHHHHh
Confidence            566666655554443

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=89.04  E-value=15  Score=34.68  Aligned_cols=173  Identities=12%  Similarity=0.045  Sum_probs=101.6

Q ss_pred             CHHHHHHHHHHhH-hhccC-chhHHHHHhcCCcHHHHHHhcC-CCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHH
Q 021317           21 EGYARRLNLMGPL-WQLSK-TRNKVKIATAGAIPPLVELLKF-QNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQ   97 (314)
Q Consensus        21 ~~~~~~~a~~al~-l~~~~-~~~~~~l~~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~   97 (314)
                      ..+.++.|+..|. ....+ ..-+..... -.+..+++.|.+ .++..+..|++.|..+..+...+-.=...-++..+++
T Consensus       300 ~a~~~k~alsel~~m~~e~sfsvWeq~f~-~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Le  378 (516)
T KOG2956|consen  300 RASERKEALSELPKMLCEGSFSVWEQHFA-EILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLE  378 (516)
T ss_pred             chhHHHHHHHHHHHHHHccchhHHHHHHH-HHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHH
Confidence            4556777777666 44433 333333222 234567788876 6788999999999999876543222122345666666


Q ss_pred             HhccCCHHHHHHHHH-HHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCC--hhhhhHHHhcc
Q 021317           98 ILHSGSVQGRVDAVT-ALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS--EEGRIAITNSD  174 (314)
Q Consensus        98 lL~~~~~~~~~~a~~-~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~~  174 (314)
                      .-.+..+++...|.. ++.-++...+.+       .|..+..++...++  +....++..+..+...  .+.-..++  .
T Consensus       379 aa~ds~~~v~~~Aeed~~~~las~~P~~-------~I~~i~~~Ilt~D~--~~~~~~iKm~Tkl~e~l~~EeL~~ll--~  447 (516)
T KOG2956|consen  379 AAKDSQDEVMRVAEEDCLTTLASHLPLQ-------CIVNISPLILTADE--PRAVAVIKMLTKLFERLSAEELLNLL--P  447 (516)
T ss_pred             HHhCCchhHHHHHHHHHHHHHHhhCchh-------HHHHHhhHHhcCcc--hHHHHHHHHHHHHHhhcCHHHHHHhh--h
Confidence            666666666555544 455555433222       23333444444322  3333444445555443  22333333  4


Q ss_pred             CCHHHHHHHhhcCCHHHHHHHHHHHHHhhcc
Q 021317          175 GGILTLVETVEDGSLVSTQHAVGALLSLCQS  205 (314)
Q Consensus       175 g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~  205 (314)
                      ...|.+++.-.+.+..+|..|+.||-.+...
T Consensus       448 diaP~~iqay~S~SS~VRKtaVfCLVamv~~  478 (516)
T KOG2956|consen  448 DIAPCVIQAYDSTSSTVRKTAVFCLVAMVNR  478 (516)
T ss_pred             hhhhHHHHHhcCchHHhhhhHHHhHHHHHHH
Confidence            5888899988999999999999999887643

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=88.94  E-value=2.2  Score=33.65  Aligned_cols=72  Identities=13%  Similarity=0.194  Sum_probs=61.9

Q ss_pred             CHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhc-CCHHHHHHHHHHHHHhhc
Q 021317          176 GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE-GTFEAQERARTLLDLLRD  247 (314)
Q Consensus       176 ~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~-~~~~~~~~A~~~L~~l~~  247 (314)
                      ++..|..-|.+.++.++..|+..|-.+..++.......+.+...+..|++++.. .++.+++....++...+.
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~  110 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD  110 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence            455777777888999999999999999998877788888889999999998887 789999999998888764

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.88  E-value=3.5  Score=44.04  Aligned_cols=173  Identities=15%  Similarity=0.100  Sum_probs=99.9

Q ss_pred             CcHHHHHHhcCCCHHHHHHHHHHHHH-hccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhh
Q 021317           50 AIPPLVELLKFQNGTLRELAAAAILT-LSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPIL  128 (314)
Q Consensus        50 ~v~~Lv~lL~~~~~~~~~~a~~~L~~-La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~  128 (314)
                      .||.|.+.=.+|+..++.. ..-+|| |..++.....-.-...++-|+.-|.+..-++|+.++.+|..|-...++-...-
T Consensus       999 LIPrLyRY~yDP~~~Vq~a-M~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e 1077 (1702)
T KOG0915|consen  999 LIPRLYRYQYDPDKKVQDA-MTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKE 1077 (1702)
T ss_pred             hhHHHhhhccCCcHHHHHH-HHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHH
Confidence            3566666656777777754 455566 54443333333345677788888888899999999999999998765433322


Q ss_pred             h-cCCcHHHHHHhhccCCchHHH---HHHHHHHHHhcCC-hhhhhHHHhccCCHHHHHHHhh-----cCCHHHHHHHHHH
Q 021317          129 D-ATAVPPLINLLKDCKKYSKFA---EKATALLEILSSS-EEGRIAITNSDGGILTLVETVE-----DGSLVSTQHAVGA  198 (314)
Q Consensus       129 ~-~g~i~~Lv~lL~~~~~~~~~~---~~a~~~L~~L~~~-~~~~~~i~~~~g~v~~Lv~ll~-----~~~~~~~~~A~~~  198 (314)
                      . ...+..+...+.+=.+  .++   +.++.+|..|+.. .+.-.-. ....++..++.+|-     +.-++++.-++.+
T Consensus      1078 ~lpelw~~~fRvmDDIKE--sVR~aa~~~~~~lsKl~vr~~d~~~~~-~~~~~l~~iLPfLl~~gims~v~evr~~si~t 1154 (1702)
T KOG0915|consen 1078 KLPELWEAAFRVMDDIKE--SVREAADKAARALSKLCVRICDVTNGA-KGKEALDIILPFLLDEGIMSKVNEVRRFSIGT 1154 (1702)
T ss_pred             HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhcccCCcc-cHHHHHHHHHHHHhccCcccchHHHHHHHHHH
Confidence            2 3466667777665322  333   4455666655432 1110000 00112333333332     3347899999999


Q ss_pred             HHHhhccCcHHHHHHHHHcCChHHHHHhhh
Q 021317          199 LLSLCQSCRDKYRQLILKEGAIPGLLRLTV  228 (314)
Q Consensus       199 L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~  228 (314)
                      +..|+.+.+...+..+  ...++.|+....
T Consensus      1155 l~dl~Kssg~~lkP~~--~~LIp~ll~~~s 1182 (1702)
T KOG0915|consen 1155 LMDLAKSSGKELKPHF--PKLIPLLLNAYS 1182 (1702)
T ss_pred             HHHHHHhchhhhcchh--hHHHHHHHHHcc
Confidence            9999988653222222  235555555443

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=88.75  E-value=12  Score=38.70  Aligned_cols=150  Identities=18%  Similarity=0.118  Sum_probs=94.4

Q ss_pred             CCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCC-HHHHHHHHHHHHHhhccCcHH
Q 021317          131 TAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGS-LVSTQHAVGALLSLCQSCRDK  209 (314)
Q Consensus       131 g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~-~~~~~~A~~~L~~L~~~~~~~  209 (314)
                      +++..|+..+++.+.  .++..|+.-+.-+....+  ..+.  ..+|...+.++.-.+ +..-.-|+-+|+.|+...-- 
T Consensus       341 ~vie~Lls~l~d~dt--~VrWSaAKg~grvt~rlp--~~La--d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlL-  413 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTDT--VVRWSAAKGLGRVTSRLP--PELA--DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLL-  413 (1133)
T ss_pred             HHHHHHHHhccCCcc--hhhHHHHHHHHHHHccCc--HHHH--HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCc-
Confidence            466666667766544  777888888887777644  3333  236666777664433 55556788888888864310 


Q ss_pred             HHHHHHHcCChHHHHHhhh--------cCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHh--hcCCCHHHHHHH
Q 021317          210 YRQLILKEGAIPGLLRLTV--------EGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIA--ARVDGADKAAET  279 (314)
Q Consensus       210 ~~~~i~~~g~v~~Lv~ll~--------~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~--~~~~~~~~~~~~  279 (314)
                      .=..+  ..++|.+++-+.        .....+|+.|+-+++.+++..+...++. ++..+.+.|.  ...|..-..++.
T Consensus       414 lps~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p-~l~~L~s~LL~~AlFDrevncRRA  490 (1133)
T KOG1943|consen  414 LPSLL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKP-VLQSLASALLIVALFDREVNCRRA  490 (1133)
T ss_pred             chHHH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhH-HHHHHHHHHHHHHhcCchhhHhHH
Confidence            00001  124555554322        2357899999999999998776544444 5555555443  335766677999


Q ss_pred             HHHHHHHHHHH
Q 021317          280 AKRLLQDMVQR  290 (314)
Q Consensus       280 A~~~L~~l~~~  290 (314)
                      |..++..++.|
T Consensus       491 AsAAlqE~VGR  501 (1133)
T KOG1943|consen  491 ASAALQENVGR  501 (1133)
T ss_pred             HHHHHHHHhcc
Confidence            99999998876

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=88.27  E-value=27  Score=35.69  Aligned_cols=221  Identities=13%  Similarity=0.032  Sum_probs=127.2

Q ss_pred             CCCHHHHHHHHHHHHHhccCC-CChhHHhhcCcHHHHHHHhc-cCCHHHHHHHHHHHHHhcCCCCCchhhh--hcCCcHH
Q 021317           60 FQNGTLRELAAAAILTLSAAA-PNKPAIAASGAAPLLVQILH-SGSVQGRVDAVTALHYLSTCKENSSPIL--DATAVPP  135 (314)
Q Consensus        60 ~~~~~~~~~a~~~L~~La~~~-~~~~~i~~~g~l~~Lv~lL~-~~~~~~~~~a~~~L~nLs~~~~~~~~i~--~~g~i~~  135 (314)
                      +..|.....+..++...+... .+...+  .-.+...++.+. +..+.++..|+.+++.-+..    ..+.  ..++++.
T Consensus       461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~--~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~----~vl~~~~p~ild~  534 (1005)
T KOG2274|consen  461 QESPFLLLRAFLTISKFSSSTVINPQLL--QHFLNATVNALTMDVPPPVKISAVRAFCGYCKV----KVLLSLQPMILDG  534 (1005)
T ss_pred             ccCHHHHHHHHHHHHHHHhhhccchhHH--HHHHHHHHHhhccCCCCchhHHHHHHHHhccCc----eeccccchHHHHH
Confidence            345555556666665444322 111111  112223333333 34556777777777766611    1122  2567777


Q ss_pred             HHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhh--cCCHHHHHHHHHHHHHhhccCcHHHHHH
Q 021317          136 LINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVE--DGSLVSTQHAVGALLSLCQSCRDKYRQL  213 (314)
Q Consensus       136 Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~--~~~~~~~~~A~~~L~~L~~~~~~~~~~~  213 (314)
                      |.++....++  ++....+.+|+..+..+....... ++...|..+.++.  +.++-+...+-.++-.++...  .+..-
T Consensus       535 L~qlas~~s~--evl~llmE~Ls~vv~~dpef~as~-~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~--~~~g~  609 (1005)
T KOG2274|consen  535 LLQLASKSSD--EVLVLLMEALSSVVKLDPEFAASM-ESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA--ANYGP  609 (1005)
T ss_pred             HHHHcccccH--HHHHHHHHHHHHHhccChhhhhhh-hcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH--Hhhcc
Confidence            7777766544  666778888888887766665655 5778888777764  345666666777776666432  12222


Q ss_pred             HHHcCChHHHHHhhhcCC----HHHHHHHHHHHHHhhcCCchhh---cchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 021317          214 ILKEGAIPGLLRLTVEGT----FEAQERARTLLDLLRDTPQEKR---LSSSVLEKIVYDIAARVDGADKAAETAKRLLQD  286 (314)
Q Consensus       214 i~~~g~v~~Lv~ll~~~~----~~~~~~A~~~L~~l~~~~~~~~---~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~  286 (314)
                      +. +-.+|.|+..+....    +....-|..+|.-+-+..+.+.   .-.-+.+++..-..  .+++......|.++|+-
T Consensus       610 m~-e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tl--HsdD~~tlQ~~~EcLra  686 (1005)
T KOG2274|consen  610 MQ-ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITL--HSDDHETLQNATECLRA  686 (1005)
T ss_pred             hH-HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhhee--ecCChHHHHhHHHHHHH
Confidence            22 247999999887654    5556666777776555443322   22224444443332  23345667889999999


Q ss_pred             HHHHHHHH
Q 021317          287 MVQRSMEL  294 (314)
Q Consensus       287 l~~~s~~~  294 (314)
                      +...+.|.
T Consensus       687 ~Is~~~eq  694 (1005)
T KOG2274|consen  687 LISVTLEQ  694 (1005)
T ss_pred             HHhcCHHH
Confidence            99655443

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=87.53  E-value=4  Score=31.66  Aligned_cols=72  Identities=13%  Similarity=0.172  Sum_probs=59.9

Q ss_pred             CHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhc---CCHHHHHHHHHHHHHhhc
Q 021317          176 GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE---GTFEAQERARTLLDLLRD  247 (314)
Q Consensus       176 ~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~---~~~~~~~~A~~~L~~l~~  247 (314)
                      ++..|-.-|+++++.++..|+..|-.+..++.......+.+...+..|+.++..   .++.+++.+..++...+.
T Consensus        38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~  112 (133)
T cd03561          38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE  112 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence            455788888889999999999999999988765677788877788889998865   478999999998888764

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=87.44  E-value=13  Score=34.28  Aligned_cols=198  Identities=21%  Similarity=0.189  Sum_probs=113.9

Q ss_pred             cHHHHHHhcCC-CHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccC-CHHHHHHHHHHHHHhc-CCCCCchhh
Q 021317           51 IPPLVELLKFQ-NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSG-SVQGRVDAVTALHYLS-TCKENSSPI  127 (314)
Q Consensus        51 v~~Lv~lL~~~-~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~-~~~~~~~a~~~L~nLs-~~~~~~~~i  127 (314)
                      |..+++=+.+. +..+|..++--|+.-..+++.+..+...|.++.+++.+.+. +......++.++..+. .+..+-..+
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~  102 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLL  102 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhh
Confidence            45666666533 45677777777777777889999999999999999999554 3324444444444444 433333333


Q ss_pred             hhcCCcHHHHHHhhc--c-----CCc-------hHH----------------------------HHHHHHHHHHhc----
Q 021317          128 LDATAVPPLINLLKD--C-----KKY-------SKF----------------------------AEKATALLEILS----  161 (314)
Q Consensus       128 ~~~g~i~~Lv~lL~~--~-----~~~-------~~~----------------------------~~~a~~~L~~L~----  161 (314)
                      .+.+....++.++.-  .     ...       .+.                            +..|+.++-.++    
T Consensus       103 ~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l~~~~~  182 (361)
T PF07814_consen  103 LDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESLVRSLR  182 (361)
T ss_pred             hchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHHHHHHHHHHh
Confidence            344455555555550  0     000       000                            112223333332    


Q ss_pred             ----C-------ChhhhhHHHhccCCHHHHHHHhhc----C-------C-----HHHHHHHHHHHHHhhccCcHHHHHHH
Q 021317          162 ----S-------SEEGRIAITNSDGGILTLVETVED----G-------S-----LVSTQHAVGALLSLCQSCRDKYRQLI  214 (314)
Q Consensus       162 ----~-------~~~~~~~i~~~~g~v~~Lv~ll~~----~-------~-----~~~~~~A~~~L~~L~~~~~~~~~~~i  214 (314)
                          .       .+..|..+. +.|++..++..+.+    .       .     ....+.++.+|-+.+..+. +++..+
T Consensus       183 ~~~~~~~t~~~~~~~fkeelr-~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~-~nq~~l  260 (361)
T PF07814_consen  183 EAGDLSETSSRAGEWFKEELR-ELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSE-ENQSYL  260 (361)
T ss_pred             hcccchhhhhhccccchhhhh-hHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCc-cchHHH
Confidence                0       011244444 57789999988852    1       1     2245778999999887764 556666


Q ss_pred             HH--cCChHHHHH-hhhcCC---HHHHHHHHHHHHHhhcCCc
Q 021317          215 LK--EGAIPGLLR-LTVEGT---FEAQERARTLLDLLRDTPQ  250 (314)
Q Consensus       215 ~~--~g~v~~Lv~-ll~~~~---~~~~~~A~~~L~~l~~~~~  250 (314)
                      ..  .+.++.+.. +++...   ......+.+++-|++++++
T Consensus       261 ~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~  302 (361)
T PF07814_consen  261 LSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNP  302 (361)
T ss_pred             HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCc
Confidence            65  333333333 333332   3445677889999998874

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=87.38  E-value=2  Score=43.39  Aligned_cols=148  Identities=22%  Similarity=0.222  Sum_probs=97.1

Q ss_pred             CCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHh--hcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC-CCCch
Q 021317           49 GAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIA--ASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC-KENSS  125 (314)
Q Consensus        49 g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~--~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~  125 (314)
                      ..+|.|++.....+...+..=..+|.+.-.+-. +..+.  -+..+|.|++.|.-+|..++..+..+|..+..- +....
T Consensus       867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP-~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t  945 (1030)
T KOG1967|consen  867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVP-KQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT  945 (1030)
T ss_pred             hhHHHHHHHhccCCccchhHHHHHHHHHHhcCC-HHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch
Confidence            567888888775445555444555555433322 22332  246788999999999999999999998887733 22222


Q ss_pred             hhhhcCCcHHHHHHhhccCCc-hHHHHHHHHHHHHhcCC-hhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHH
Q 021317          126 PILDATAVPPLINLLKDCKKY-SKFAEKATALLEILSSS-EEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGAL  199 (314)
Q Consensus       126 ~i~~~g~i~~Lv~lL~~~~~~-~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L  199 (314)
                      .=++ -.+|.++.+-++.+.+ ..+++.|+.+|..|... +...-.-. ...++..|...|++....+|+.|..+=
T Consensus       946 ~~~~-Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~f-r~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen  946 EHLS-TLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSF-RPLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred             HHHh-HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccc-cHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence            1111 2667777666665432 46788999999999884 44333333 356777888999887788888888763

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=87.32  E-value=8.7  Score=37.68  Aligned_cols=165  Identities=7%  Similarity=0.045  Sum_probs=96.4

Q ss_pred             ccccCCHHHHHHHHHHhHhhccCchhHHHHHh----cCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhc--
Q 021317           16 METYFEGYARRLNLMGPLWQLSKTRNKVKIAT----AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAAS--   89 (314)
Q Consensus        16 ~l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~----~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~--   89 (314)
                      ++....++.+.-|+..++++..+...-..++.    ...+..++..+. .++.-+..++++|.|+-.++.++..+...  
T Consensus       552 ~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~~~  630 (745)
T KOG0301|consen  552 ILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSRLE  630 (745)
T ss_pred             HHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            34445567788888888844333333333332    234555555554 56777888999999998887777776643  


Q ss_pred             CcHHHHHHHhccCCHHHHHHHHHHHHHhcC--CCCCchhhhhcCCcHHHHHHhhccC---CchHHHHHHHHHHHHhcCCh
Q 021317           90 GAAPLLVQILHSGSVQGRVDAVTALHYLST--CKENSSPILDATAVPPLINLLKDCK---KYSKFAEKATALLEILSSSE  164 (314)
Q Consensus        90 g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~--~~~~~~~i~~~g~i~~Lv~lL~~~~---~~~~~~~~a~~~L~~L~~~~  164 (314)
                      -.+.++++.=..++..++...+....|++.  ..++-+    .|..+.+...+....   ++-+..-..+-+|.+|+..+
T Consensus       631 ~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~  706 (745)
T KOG0301|consen  631 SILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVD  706 (745)
T ss_pred             HHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcccc
Confidence            222233332223345666655556666652  122211    445555555554322   11123345667788889888


Q ss_pred             hhhhHHHhccCCHHHHHHHhhc
Q 021317          165 EGRIAITNSDGGILTLVETVED  186 (314)
Q Consensus       165 ~~~~~i~~~~g~v~~Lv~ll~~  186 (314)
                      ....++. ..-.|..+..-+++
T Consensus       707 ~~~~~~A-~~~~v~sia~~~~~  727 (745)
T KOG0301|consen  707 ASVIQLA-KNRSVDSIAKKLKE  727 (745)
T ss_pred             HHHHHHH-HhcCHHHHHHHHHH
Confidence            8888887 46677888777765

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=86.99  E-value=3.6  Score=32.41  Aligned_cols=72  Identities=13%  Similarity=0.091  Sum_probs=61.0

Q ss_pred             CHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhh-cCCHHHHHHHHHHHHHhhc
Q 021317          176 GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTV-EGTFEAQERARTLLDLLRD  247 (314)
Q Consensus       176 ~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~-~~~~~~~~~A~~~L~~l~~  247 (314)
                      ++..|-+-|.++++.++..|+..|-.+..++.......+.+.+.+..|++++. ..++.+++.+..++..-+.
T Consensus        42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  114 (142)
T cd03569          42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL  114 (142)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence            55678888888999999999999999988876678888888999999999886 4578999999998888764

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.86  E-value=15  Score=38.41  Aligned_cols=214  Identities=17%  Similarity=0.135  Sum_probs=132.6

Q ss_pred             HHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCC----
Q 021317           29 LMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGS----  103 (314)
Q Consensus        29 ~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~----  103 (314)
                      ..+|. +...+++|...+.+..++..++.++-+  .+-|...++.+..|-..+..+   ++..-+-.++..|+++-    
T Consensus       663 wDcLisllKnnteNqklFreanGvklilpflin--dehRSslLrivscLitvdpkq---vhhqelmalVdtLksgmvt~I  737 (2799)
T KOG1788|consen  663 WDCLISLLKNNTENQKLFREANGVKLILPFLIN--DEHRSSLLRIVSCLITVDPKQ---VHHQELMALVDTLKSGMVTRI  737 (2799)
T ss_pred             HHHHHHHHhccchhhHHHHhhcCceEEEEeeec--hHHHHHHHHHHHHHhccCccc---ccHHHHHHHHHHHHhcceecc
Confidence            44555 888999999999999999988888844  333444445554444332211   12233456777777641    


Q ss_pred             --------HHHHHHHHHHHHHhc-CCCCCchhhhhcCCcHHHHHHhhcc------CCchHH-------------------
Q 021317          104 --------VQGRVDAVTALHYLS-TCKENSSPILDATAVPPLINLLKDC------KKYSKF-------------------  149 (314)
Q Consensus       104 --------~~~~~~a~~~L~nLs-~~~~~~~~i~~~g~i~~Lv~lL~~~------~~~~~~-------------------  149 (314)
                              -..+....++++... .+...+..+.+.|+...|...|-.-      .+..+.                   
T Consensus       738 sgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavc  817 (2799)
T KOG1788|consen  738 SGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVC  817 (2799)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHh
Confidence                    134555667777776 4445556666777766666555210      000000                   


Q ss_pred             ----------------------------------------HHHHH------------HHHHHhcCC--------------
Q 021317          150 ----------------------------------------AEKAT------------ALLEILSSS--------------  163 (314)
Q Consensus       150 ----------------------------------------~~~a~------------~~L~~L~~~--------------  163 (314)
                                                              .+.++            ++++.+-..              
T Consensus       818 enasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGqf  897 (2799)
T KOG1788|consen  818 ENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQF  897 (2799)
T ss_pred             hcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCCc
Confidence                                                    00010            111111111              


Q ss_pred             hhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhh---hcCCHHHHHHHHH
Q 021317          164 EEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLT---VEGTFEAQERART  240 (314)
Q Consensus       164 ~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll---~~~~~~~~~~A~~  240 (314)
                      ...++.+. ..|++..+++.+-...++.+..-+..|..++..++ .+.+.....|+++.|++++   .+++...-.++..
T Consensus       898 npdk~~iy-nagavRvlirslLlnypK~qlefl~lleSlaRasp-fnaelltS~gcvellleIiypflsgsspfLshalk  975 (2799)
T KOG1788|consen  898 NPDKQKIY-NAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASP-FNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALK  975 (2799)
T ss_pred             CchHhhhc-ccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCC-CchhhhhcccHHHHHHHHhhhhhcCCchHhhccHH
Confidence            12255666 68889999998888888988888988988888775 5677777789999988854   3466666777888


Q ss_pred             HHHHhhcCC
Q 021317          241 LLDLLRDTP  249 (314)
Q Consensus       241 ~L~~l~~~~  249 (314)
                      ++..|+-.+
T Consensus       976 IvemLgayr  984 (2799)
T KOG1788|consen  976 IVEMLGAYR  984 (2799)
T ss_pred             HHHHHhhcc
Confidence            888877544

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=86.54  E-value=36  Score=34.15  Aligned_cols=67  Identities=18%  Similarity=0.055  Sum_probs=52.3

Q ss_pred             ccCCHHHHHHH-hhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhh-hcCCHHHHHHHHHHHHHhhcCC
Q 021317          173 SDGGILTLVET-VEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLT-VEGTFEAQERARTLLDLLRDTP  249 (314)
Q Consensus       173 ~~g~v~~Lv~l-l~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll-~~~~~~~~~~A~~~L~~l~~~~  249 (314)
                      ++++|..|+.. +.+.+++++..|..+|.-++..+++          .++..++++ .+.++.+|-.|+.+|...|.+.
T Consensus       552 nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~----------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGt  620 (929)
T KOG2062|consen  552 NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE----------QLPSTVSLLSESYNPHVRYGAAMALGIACAGT  620 (929)
T ss_pred             chhhHHHhhcccccccchHHHHHHHHHheeeEecChh----------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCC
Confidence            35566777776 5677899999999999998888765          466677755 5568999999999999877655

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=86.13  E-value=4.3  Score=31.84  Aligned_cols=72  Identities=13%  Similarity=0.158  Sum_probs=60.0

Q ss_pred             CHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhc------CCHHHHHHHHHHHHHhhc
Q 021317          176 GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE------GTFEAQERARTLLDLLRD  247 (314)
Q Consensus       176 ~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~------~~~~~~~~A~~~L~~l~~  247 (314)
                      ++..+..-|.++++.++..|+..|-.+..++.......+.+...+..|++++..      .++.+++....++..-+.
T Consensus        39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  116 (139)
T cd03567          39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL  116 (139)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            556788888889999999999999999888776788888888999999998853      468999999888877654

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=86.03  E-value=35  Score=37.01  Aligned_cols=141  Identities=16%  Similarity=0.182  Sum_probs=94.4

Q ss_pred             CcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC--CchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHh-cCChhh
Q 021317           90 GAAPLLVQILHSGSVQGRVDAVTALHYLSTCKE--NSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEIL-SSSEEG  166 (314)
Q Consensus        90 g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L-~~~~~~  166 (314)
                      +.+..++..|..+...+|..|+.+|.++...+.  -...-++.|+...+    .+.  ...++++|+..+.-. ..+++.
T Consensus       816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~----~Ds--sasVREAaldLvGrfvl~~~e~  889 (1692)
T KOG1020|consen  816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRL----NDS--SASVREAALDLVGRFVLSIPEL  889 (1692)
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhh----ccc--hhHHHHHHHHHHhhhhhccHHH
Confidence            467888889998999999999999999985543  22333444444443    222  237889999988743 333444


Q ss_pred             hhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhh---cCCHHHHHHHHHHHH
Q 021317          167 RIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTV---EGTFEAQERARTLLD  243 (314)
Q Consensus       167 ~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~---~~~~~~~~~A~~~L~  243 (314)
                      ..+..      ..+.+-+.+..-.+|..+..+|+.+|...|+ . ..     .+....++++   ++...+++-+..++.
T Consensus       890 ~~qyY------~~i~erIlDtgvsVRKRvIKIlrdic~e~pd-f-~~-----i~~~cakmlrRv~DEEg~I~kLv~etf~  956 (1692)
T KOG1020|consen  890 IFQYY------DQIIERILDTGVSVRKRVIKILRDICEETPD-F-SK-----IVDMCAKMLRRVNDEEGNIKKLVRETFL  956 (1692)
T ss_pred             HHHHH------HHHHhhcCCCchhHHHHHHHHHHHHHHhCCC-h-hh-----HHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence            44433      2566666777889999999999999988764 1 11     2233334333   344558888888888


Q ss_pred             HhhcCC
Q 021317          244 LLRDTP  249 (314)
Q Consensus       244 ~l~~~~  249 (314)
                      .+.-.+
T Consensus       957 klWF~p  962 (1692)
T KOG1020|consen  957 KLWFTP  962 (1692)
T ss_pred             HHhccC
Confidence            887555

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.96  E-value=13  Score=37.13  Aligned_cols=104  Identities=19%  Similarity=0.126  Sum_probs=51.5

Q ss_pred             cHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHH
Q 021317           91 AAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAI  170 (314)
Q Consensus        91 ~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i  170 (314)
                      .+..+..+|.+.++.++..|++.|.+|+.++..-..     +...+++++...+++ .+..-.+--|..+.   .....+
T Consensus       244 ~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~-----Aa~~~i~l~~kesdn-nvklIvldrl~~l~---~~~~~i  314 (948)
T KOG1058|consen  244 YIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKA-----AASTYIDLLVKESDN-NVKLIVLDRLSELK---ALHEKI  314 (948)
T ss_pred             HHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHH-----HHHHHHHHHHhccCc-chhhhhHHHHHHHh---hhhHHH
Confidence            444555555555555555555555555554422211     122233333322111 11111222222222   222333


Q ss_pred             HhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcc
Q 021317          171 TNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQS  205 (314)
Q Consensus       171 ~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~  205 (314)
                      .  .|.+-.++++|.+.+-+++..++..-..|..+
T Consensus       315 l--~~l~mDvLrvLss~dldvr~Ktldi~ldLvss  347 (948)
T KOG1058|consen  315 L--QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSS  347 (948)
T ss_pred             H--HHHHHHHHHHcCcccccHHHHHHHHHHhhhhh
Confidence            3  34666777888888888888888888777654

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=85.92  E-value=6.4  Score=39.99  Aligned_cols=193  Identities=15%  Similarity=0.101  Sum_probs=116.2

Q ss_pred             hHHHHHhcCCcHHHHHHhcCC--------CHHHHHHHHHHHHHhccCCCChhHHhhc--------CcHHHHHHHhcc---
Q 021317           41 NKVKIATAGAIPPLVELLKFQ--------NGTLRELAAAAILTLSAAAPNKPAIAAS--------GAAPLLVQILHS---  101 (314)
Q Consensus        41 ~~~~l~~~g~v~~Lv~lL~~~--------~~~~~~~a~~~L~~La~~~~~~~~i~~~--------g~l~~Lv~lL~~---  101 (314)
                      -...+.+.|++..++++..-+        ..+....|+.+|+-+..-++.+..+.++        .|+.-++..-..   
T Consensus       593 ~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~  672 (1516)
T KOG1832|consen  593 AAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNS  672 (1516)
T ss_pred             HHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeeccccccc
Confidence            345677888888888877432        3466778888888888777777777642        134333333221   


Q ss_pred             -CCHHHHHHHHHHHHHhcCCC-CCchhhhhc-C---CcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccC
Q 021317          102 -GSVQGRVDAVTALHYLSTCK-ENSSPILDA-T---AVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDG  175 (314)
Q Consensus       102 -~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~-g---~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g  175 (314)
                       -+++++..|+.+|.|+...+ +++..+... |   +-+..  .+..+... ...+..++=.|+-          ++.+.
T Consensus       673 i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~--~l~~~~ks-~~le~~l~~mw~~----------Vr~nd  739 (1516)
T KOG1832|consen  673 IVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRI--FLGAGTKS-AKLEQVLRQMWEA----------VRGND  739 (1516)
T ss_pred             ccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccc--cccCCCch-HHHHHHHHHHHHH----------HhcCc
Confidence             27899999999999998655 666554331 1   11110  11111111 2223444444432          23688


Q ss_pred             CHHHHHHHhhcCC-----HHHHHHHHHHHHHhhccCcHHHHHHHHHc-----CChHHHHH--hhhc-CCHHHH--HHHHH
Q 021317          176 GILTLVETVEDGS-----LVSTQHAVGALLSLCQSCRDKYRQLILKE-----GAIPGLLR--LTVE-GTFEAQ--ERART  240 (314)
Q Consensus       176 ~v~~Lv~ll~~~~-----~~~~~~A~~~L~~L~~~~~~~~~~~i~~~-----g~v~~Lv~--ll~~-~~~~~~--~~A~~  240 (314)
                      +|..|+++|.-..     ..++..|+.+|.-|+.++  ++|+.+.+-     ..++.|+.  +..+ .+..++  ..|+.
T Consensus       740 GIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~--tVrQIltKLpLvt~~~~q~lm~ePV~~Dkr~~H~~fck~A~~  817 (1516)
T KOG1832|consen  740 GIKILLKLLQYKNPPTTADCIRALACRVLLGLARDD--TVRQILTKLPLVTNERAQILMAEPVTYDKRHEHLQFCKLASA  817 (1516)
T ss_pred             cHHHHHHHHhccCCCCcHHHHHHHHHHHHhccccCc--HHHHHHHhCccccchHHHHHhhCcccccchhHHHHHHHHHHH
Confidence            9999999997532     578999999999999886  778877653     34444444  2222 233333  34556


Q ss_pred             HHHHhhcC
Q 021317          241 LLDLLRDT  248 (314)
Q Consensus       241 ~L~~l~~~  248 (314)
                      +|......
T Consensus       818 Ll~~~~g~  825 (1516)
T KOG1832|consen  818 LLKEAQGT  825 (1516)
T ss_pred             HHHHHhCC
Confidence            66665443

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=85.91  E-value=2.7  Score=40.43  Aligned_cols=66  Identities=26%  Similarity=0.252  Sum_probs=48.8

Q ss_pred             cCCHHHHHHH-hhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhh-hcCCHHHHHHHHHHHHHhhcCC
Q 021317          174 DGGILTLVET-VEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLT-VEGTFEAQERARTLLDLLRDTP  249 (314)
Q Consensus       174 ~g~v~~Lv~l-l~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll-~~~~~~~~~~A~~~L~~l~~~~  249 (314)
                      .|+|..++.. +.+++++++..|..+|.-+|..+++          .+...++++ .+.++.++-..+-+|...|...
T Consensus       550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~----------~lv~tvelLs~shN~hVR~g~AvaLGiacag~  617 (926)
T COG5116         550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD----------LLVGTVELLSESHNFHVRAGVAVALGIACAGT  617 (926)
T ss_pred             chhHhhhheeecccCchHHHHHHHHheeeeEecCcc----------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCC
Confidence            4566777776 5677899999999999999887653          556666654 4567888887777887766544

>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species

Probab=85.78  E-value=23  Score=30.76  Aligned_cols=112  Identities=17%  Similarity=0.153  Sum_probs=69.6

Q ss_pred             cCCcHHHHHHhcCC-----------CHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHH--------HHH
Q 021317           48 AGAIPPLVELLKFQ-----------NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQ--------GRV  108 (314)
Q Consensus        48 ~g~v~~Lv~lL~~~-----------~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~--------~~~  108 (314)
                      .-.+|.|+.+|...           +.....+|...|..+          .+..++|+++++++.++.-        +-+
T Consensus        30 e~i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq~----------re~~A~~~li~l~~~~~~~~~~l~GD~~tE   99 (249)
T PF06685_consen   30 EEITPELLKILEDAIERANELLDDEEYNLHFYALYLLAQF----------REERALPPLIRLFSQDDDFLEDLFGDFITE   99 (249)
T ss_pred             HHhhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHHHH----------hhhhhHHHHHHHHcCCcchHHHHHcchhHh
Confidence            34578888877431           112233444443333          6678999999999766531        111


Q ss_pred             HHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCC-hhhhhHHHhccCCHHHHHHH
Q 021317          109 DAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRIAITNSDGGILTLVET  183 (314)
Q Consensus       109 ~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~v~~Lv~l  183 (314)
                      ....+|.+           +-.|-++.|.+++.+++.+.=++..|+++|..++.. +..|..+++   .+..++..
T Consensus       100 ~l~~ilas-----------v~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~---~f~~ll~~  161 (249)
T PF06685_consen  100 DLPRILAS-----------VGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQ---YFRELLNY  161 (249)
T ss_pred             HHHHHHHH-----------HhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHH---HHHHHHHH
Confidence            22222222           235678999999988766656677888999888766 556777774   56666655

The function of this family is unknown.

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=85.60  E-value=8.7  Score=30.99  Aligned_cols=113  Identities=16%  Similarity=0.143  Sum_probs=74.3

Q ss_pred             CCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHH--cCChHHHHHhhhcC-CHHHHHHHHHHHHHhhcCCch
Q 021317          175 GGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK--EGAIPGLLRLTVEG-TFEAQERARTLLDLLRDTPQE  251 (314)
Q Consensus       175 g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~--~g~v~~Lv~ll~~~-~~~~~~~A~~~L~~l~~~~~~  251 (314)
                      ..+..+..+|.+.++.-+..++..+..++..++   .+.+.+  ...+..|+.+++.. .+.+++.|+.+|..+.....+
T Consensus        25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~---~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~  101 (165)
T PF08167_consen   25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS---WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG  101 (165)
T ss_pred             HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            355678888888888888888888888886652   355545  33688888888765 467788888888888653322


Q ss_pred             --hhc---chhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Q 021317          252 --KRL---SSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRS  291 (314)
Q Consensus       252 --~~~---~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s  291 (314)
                        ...   ..-.+++++..+....++ ....+.+...|..+.++.
T Consensus       102 ~p~l~Rei~tp~l~~~i~~ll~l~~~-~~~~~~~l~~L~~ll~~~  145 (165)
T PF08167_consen  102 KPTLTREIATPNLPKFIQSLLQLLQD-SSCPETALDALATLLPHH  145 (165)
T ss_pred             CCchHHHHhhccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHC
Confidence              111   122344555554433322 466788888888888754

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=85.23  E-value=4.9  Score=39.64  Aligned_cols=136  Identities=15%  Similarity=0.156  Sum_probs=91.5

Q ss_pred             hcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHh-ccCCHHHHHHHHHHHHHhcCCCCCch
Q 021317           47 TAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQIL-HSGSVQGRVDAVTALHYLSTCKENSS  125 (314)
Q Consensus        47 ~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL-~~~~~~~~~~a~~~L~nLs~~~~~~~  125 (314)
                      +..++|.|..-+++.+..+++.++..+...+..-+  ...+..-.+|.+-.+. ...+..++.+++-++..+.      +
T Consensus       387 ~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~------q  458 (700)
T KOG2137|consen  387 KEKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI------Q  458 (700)
T ss_pred             HHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH------H
Confidence            34556666677777788899999998888877544  4445566677777763 4567889999999999888      2


Q ss_pred             hhhhcCCcHHHHHHhhcc-CCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHH
Q 021317          126 PILDATAVPPLINLLKDC-KKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVS  191 (314)
Q Consensus       126 ~i~~~g~i~~Lv~lL~~~-~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~  191 (314)
                      .+-...+++.+..+++.- ..++.+.-..+.+..++.........++ ...++|.++.+...+.-..
T Consensus       459 ~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~-~~~VlPlli~ls~~~~L~~  524 (700)
T KOG2137|consen  459 RLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVM-AENVLPLLIPLSVAPSLNG  524 (700)
T ss_pred             HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeee-hhhhhhhhhhhhhcccccH
Confidence            222334444444444432 2334777778888888887766643444 3668888888887765433

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=84.85  E-value=4.3  Score=42.21  Aligned_cols=140  Identities=21%  Similarity=0.172  Sum_probs=98.1

Q ss_pred             CcHHHHHHhcC----CCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhc-cCCHHHHHHHHHHHHHhcCCCCCc
Q 021317           50 AIPPLVELLKF----QNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILH-SGSVQGRVDAVTALHYLSTCKENS  124 (314)
Q Consensus        50 ~v~~Lv~lL~~----~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~-~~~~~~~~~a~~~L~nLs~~~~~~  124 (314)
                      ..|.+++..++    .+|+++..|.-+|+.+..-+.   . .-...+|.|+..|+ +++|.+|.++.-+++.|+..-+|-
T Consensus       920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa---~-fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnl  995 (1251)
T KOG0414|consen  920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISA---E-FCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNL  995 (1251)
T ss_pred             HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhH---H-HHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccc
Confidence            35666666643    479999999999998643211   1 11345789999998 789999999999999998654441


Q ss_pred             hhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 021317          125 SPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQ  204 (314)
Q Consensus       125 ~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~  204 (314)
                         ++ -.-+.|..-|.+.  ++.++..|.-+|.+|-.++..|     --|-++-+..++.++++.++..|=..+-.|+.
T Consensus       996 ---ie-~~T~~Ly~rL~D~--~~~vRkta~lvlshLILndmiK-----VKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen  996 ---IE-PWTEHLYRRLRDE--SPSVRKTALLVLSHLILNDMIK-----VKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred             ---cc-hhhHHHHHHhcCc--cHHHHHHHHHHHHHHHHhhhhH-----hcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence               11 1223344555554  4488999999999988766554     46888889999999998888887755444443

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=84.03  E-value=3  Score=30.14  Aligned_cols=68  Identities=15%  Similarity=0.120  Sum_probs=54.5

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC
Q 021317           52 PPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC  120 (314)
Q Consensus        52 ~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~  120 (314)
                      ...+.-+.++.+.+|.+++..|..|....+ ...+-..+.+..+...|+++++-+--+|+.+|..|+..
T Consensus         6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~   73 (92)
T PF10363_consen    6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADR   73 (92)
T ss_pred             HHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence            345667778888899999999999988766 33333467788888889999999999999999998854

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=83.61  E-value=29  Score=34.29  Aligned_cols=134  Identities=22%  Similarity=0.129  Sum_probs=77.0

Q ss_pred             cHHHHHHHhcc----CCHHHHHHHHHHHHHhcC----CC------CCchhhhhcCCcHHHHHHhhcc--CCchHHHHHHH
Q 021317           91 AAPLLVQILHS----GSVQGRVDAVTALHYLST----CK------ENSSPILDATAVPPLINLLKDC--KKYSKFAEKAT  154 (314)
Q Consensus        91 ~l~~Lv~lL~~----~~~~~~~~a~~~L~nLs~----~~------~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~~~a~  154 (314)
                      .+..+..++.+    .++.++..|+.++..|..    ..      ..+........++.+...+...  ..+..-...++
T Consensus       432 ~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~L  511 (618)
T PF01347_consen  432 LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYL  511 (618)
T ss_dssp             HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHH
Confidence            44555566654    356677777777777753    21      1122233345677777777632  11223455678


Q ss_pred             HHHHHhcCChhhhhHHHhccCCHHHHHHHhhcC---CHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhc--
Q 021317          155 ALLEILSSSEEGRIAITNSDGGILTLVETVEDG---SLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE--  229 (314)
Q Consensus       155 ~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~---~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~--  229 (314)
                      .+|.|+..           ...++.|..++.+.   +..+|..|+.+|..++...++.         +.+.|..+..+  
T Consensus       512 kaLgN~g~-----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~---------v~~~l~~I~~n~~  571 (618)
T PF01347_consen  512 KALGNLGH-----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK---------VREILLPIFMNTT  571 (618)
T ss_dssp             HHHHHHT------------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH---------HHHHHHHHHH-TT
T ss_pred             HHhhccCC-----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH---------HHHHHHHHhcCCC
Confidence            88888753           34677777777665   5788999999999887776543         34556666555  


Q ss_pred             CCHHHHHHHHHHHHH
Q 021317          230 GTFEAQERARTLLDL  244 (314)
Q Consensus       230 ~~~~~~~~A~~~L~~  244 (314)
                      .++++|-.|..+|-.
T Consensus       572 e~~EvRiaA~~~lm~  586 (618)
T PF01347_consen  572 EDPEVRIAAYLILMR  586 (618)
T ss_dssp             S-HHHHHHHHHHHHH
T ss_pred             CChhHHHHHHHHHHh
Confidence            357777777655533

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=83.48  E-value=6.7  Score=38.59  Aligned_cols=189  Identities=13%  Similarity=0.104  Sum_probs=115.8

Q ss_pred             hhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhh
Q 021317           87 AASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEG  166 (314)
Q Consensus        87 ~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~  166 (314)
                      .+.+.+|.+++++...+..+|..-+.-+-+...  -.-..+++..+.|.+..-+.+.++  .+++.++..+..|+..-..
T Consensus       327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~--~Lt~~~~~d~I~phv~~G~~DTn~--~Lre~Tlksm~~La~kL~~  402 (690)
T KOG1243|consen  327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYID--HLTKQILNDQIFPHVALGFLDTNA--TLREQTLKSMAVLAPKLSK  402 (690)
T ss_pred             cccchhhhHHHHhcCcchHHHHHHHHhHHHHhh--hcCHHhhcchhHHHHHhhcccCCH--HHHHHHHHHHHHHHhhhch
Confidence            456789999999999988777665554444332  234456667788888888888655  7888888888777665333


Q ss_pred             hhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 021317          167 RIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLR  246 (314)
Q Consensus       167 ~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~  246 (314)
                      +  .. .......+-++-.+....++.+...||..++.+-....    +..-.+-+..+-+++.-+..|..+...+....
T Consensus       403 ~--~L-n~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~----R~~vL~~aftralkdpf~paR~a~v~~l~at~  475 (690)
T KOG1243|consen  403 R--NL-NGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV----RKRVLASAFTRALKDPFVPARKAGVLALAATQ  475 (690)
T ss_pred             h--hh-cHHHHHHHHhhCccccCcccccceeeecccccccchhh----hccccchhhhhhhcCCCCCchhhhhHHHhhcc
Confidence            3  11 11122222222233456788899988888886642221    22223444555566666777888888887776


Q ss_pred             cCCchhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q 021317          247 DTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQ  289 (314)
Q Consensus       247 ~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~  289 (314)
                      ..-....+...+++.+++...   +.+...+..|-..+.-+-.
T Consensus       476 ~~~~~~~va~kIlp~l~pl~v---d~e~~vr~~a~~~i~~fl~  515 (690)
T KOG1243|consen  476 EYFDQSEVANKILPSLVPLTV---DPEKTVRDTAEKAIRQFLE  515 (690)
T ss_pred             cccchhhhhhhcccccccccc---CcccchhhHHHHHHHHHHh
Confidence            655544555566666654444   4334456666666655553

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=82.29  E-value=7.8  Score=30.04  Aligned_cols=72  Identities=14%  Similarity=0.156  Sum_probs=58.6

Q ss_pred             CHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCC--HHHHHHHHHHHHHhhc
Q 021317          176 GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGT--FEAQERARTLLDLLRD  247 (314)
Q Consensus       176 ~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~--~~~~~~A~~~L~~l~~  247 (314)
                      ++..|-+-|+++++.++..|+..|-.+..++.......+.+..++..|..++....  +.+++.+..++..-+.
T Consensus        38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~  111 (133)
T smart00288       38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD  111 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence            44567778888999999999999999998876678888888899999999887643  4488888888877654

Unpublished observations. Domain of unknown function.

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=81.94  E-value=68  Score=33.25  Aligned_cols=121  Identities=17%  Similarity=0.113  Sum_probs=75.6

Q ss_pred             cCCHHHHHHHHHHhH-hh---ccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC-CChhHHhhcCcHH
Q 021317           19 YFEGYARRLNLMGPL-WQ---LSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA-PNKPAIAASGAAP   93 (314)
Q Consensus        19 ~~~~~~~~~a~~al~-l~---~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~~~~~i~~~g~l~   93 (314)
                      ..++....-|+..+. ++   .+....+.. .+.-.++.+...++++..-+|.+|++++...+.-+ .+....  ..++.
T Consensus       429 ~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~-mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l--~~ale  505 (1010)
T KOG1991|consen  429 NKNPRQKDGALRMVGSLASILLKKSPYKSQ-MEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNL--SEALE  505 (1010)
T ss_pred             ccChhhhhhHHHHHHHHHHHHccCCchHHH-HHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHH--HHHHH
Confidence            345666666766655 32   233333333 24445566677778888889999999999998533 222222  34566


Q ss_pred             HHHHHhc-cCCHHHHHHHHHHHHHhcCCCC-Cchhhhh--cCCcHHHHHHhhc
Q 021317           94 LLVQILH-SGSVQGRVDAVTALHYLSTCKE-NSSPILD--ATAVPPLINLLKD  142 (314)
Q Consensus        94 ~Lv~lL~-~~~~~~~~~a~~~L~nLs~~~~-~~~~i~~--~g~i~~Lv~lL~~  142 (314)
                      ...+.|. +++..++..|+-+|..+-.+.+ ....+..  .+.++.|+++.+.
T Consensus       506 ~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne  558 (1010)
T KOG1991|consen  506 LTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNE  558 (1010)
T ss_pred             HHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHh
Confidence            6677777 7778899999999999986544 3343443  3455555555544

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.59  E-value=24  Score=35.85  Aligned_cols=216  Identities=13%  Similarity=0.033  Sum_probs=119.3

Q ss_pred             ccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHH
Q 021317           16 METYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPL   94 (314)
Q Consensus        16 ~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~   94 (314)
                      .+..+...+|-+++.-+. ++... .....+...+++...+..|++.++-+-..|...+..|+.-       ..+..+|.
T Consensus       735 sl~d~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~d  806 (982)
T KOG4653|consen  735 SLHDDQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPD  806 (982)
T ss_pred             HhcCCcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHH
Confidence            355666777888888888 55544 4444555778999999999998887777777766565432       44566777


Q ss_pred             HHHH-hccC---CHHHHHHHHHHHHHhcCC-CCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhh-h
Q 021317           95 LVQI-LHSG---SVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGR-I  168 (314)
Q Consensus        95 Lv~l-L~~~---~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~-~  168 (314)
                      +.+. .+..   .++.+...-.++.++... .+....-.+ -.+...+...+++  +...+..+++.+.+||.-.+.+ .
T Consensus       807 L~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrep--d~~~RaSS~a~lg~Lcq~~a~~vs  883 (982)
T KOG4653|consen  807 LSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREP--DHEFRASSLANLGQLCQLLAFQVS  883 (982)
T ss_pred             HHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCc--hHHHHHhHHHHHHHHHHHHhhhhh
Confidence            7763 3221   122333333556555522 121111111 1233333333432  3355677888888887653321 1


Q ss_pred             HHHhccCCHHHHHHHhh-cCCHHHHHHHHHHHHHhhccCcHHHHHHHHH--cCChHHHHHhhhcCC-HHHHHHHHHHHHH
Q 021317          169 AITNSDGGILTLVETVE-DGSLVSTQHAVGALLSLCQSCRDKYRQLILK--EGAIPGLLRLTVEGT-FEAQERARTLLDL  244 (314)
Q Consensus       169 ~i~~~~g~v~~Lv~ll~-~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~--~g~v~~Lv~ll~~~~-~~~~~~A~~~L~~  244 (314)
                      ..+  ..++..++.+.+ +++.-+|+.|+-.+..+-.+...+.-.....  -+....+..+.+.++ +..+.+|..++..
T Consensus       884 d~~--~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~lee  961 (982)
T KOG4653|consen  884 DFF--HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEE  961 (982)
T ss_pred             HHH--HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            122  124555666555 4668888999988888765543222221111  234455556666543 4455566555443

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.07  E-value=62  Score=32.43  Aligned_cols=146  Identities=14%  Similarity=0.093  Sum_probs=85.5

Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHHhc--CCCCC----chhhhhcCCcHHHHHHhhccCCchHHHHHH-HHHHHHhcCChh
Q 021317           93 PLLVQILHSGSVQGRVDAVTALHYLS--TCKEN----SSPILDATAVPPLINLLKDCKKYSKFAEKA-TALLEILSSSEE  165 (314)
Q Consensus        93 ~~Lv~lL~~~~~~~~~~a~~~L~nLs--~~~~~----~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a-~~~L~~L~~~~~  165 (314)
                      |.|.+-|+-++..++.+|+..+.++-  .+++.    .+.+.+ .-...|.++|++..+  .++-.| .+++...+    
T Consensus       177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p--~VRS~a~~gv~k~~s----  249 (1005)
T KOG1949|consen  177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDPYP--MVRSTAILGVCKITS----  249 (1005)
T ss_pred             HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCCCc--hHHHHHHHHHHHHHH----
Confidence            34445566679999999999999987  34433    223333 245678889988755  443222 22222111    


Q ss_pred             hhhHHHhccCCHHHHHHHh-----hcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHH
Q 021317          166 GRIAITNSDGGILTLVETV-----EDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERART  240 (314)
Q Consensus       166 ~~~~i~~~~g~v~~Lv~ll-----~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~  240 (314)
                      --..++ -...+..++.-+     .+...++|-.....|-.+..++.   ..-+.+ .++|.|-..+.+.+..++-+++.
T Consensus       250 ~fWe~i-P~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~---sh~~le-~~Lpal~~~l~D~se~VRvA~vd  324 (1005)
T KOG1949|consen  250 KFWEMI-PPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPL---SHPLLE-QLLPALRYSLHDNSEKVRVAFVD  324 (1005)
T ss_pred             HHHHHc-CHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCcc---chhHHH-HHHHhcchhhhccchhHHHHHHH
Confidence            112222 122222222222     22345777777888877776642   233333 24667777888888999998888


Q ss_pred             HHHHhhcCCc
Q 021317          241 LLDLLRDTPQ  250 (314)
Q Consensus       241 ~L~~l~~~~~  250 (314)
                      .|-.+..+.-
T Consensus       325 ~ll~ik~vra  334 (1005)
T KOG1949|consen  325 MLLKIKAVRA  334 (1005)
T ss_pred             HHHHHHhhhh
Confidence            8888776553

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=80.46  E-value=36  Score=29.14  Aligned_cols=138  Identities=21%  Similarity=0.225  Sum_probs=83.5

Q ss_pred             HHHHHHh-cCCCHHHHHHHHHHHHHhccCC-CChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhh
Q 021317           52 PPLVELL-KFQNGTLRELAAAAILTLSAAA-PNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILD  129 (314)
Q Consensus        52 ~~Lv~lL-~~~~~~~~~~a~~~L~~La~~~-~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~  129 (314)
                      +.|+.-+ +..+++.+...+.+|..++.++ .+...+     +..+..+.+.++...+.-+.+.+..+-... ++..   
T Consensus         3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v-----~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~-~r~f---   73 (234)
T PF12530_consen    3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPPV-----LQTLVSLVEQGSLELRYVALRLLTLLWKAN-DRHF---   73 (234)
T ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhHH-----HHHHHHHHcCCchhHHHHHHHHHHHHHHhC-chHH---
Confidence            4455434 4558889999999999999887 444444     345566666666666555565555554332 2221   


Q ss_pred             cCCcHHHHHHh--------hccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHh-hcCCHHHHHHHHHHHH
Q 021317          130 ATAVPPLINLL--------KDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETV-EDGSLVSTQHAVGALL  200 (314)
Q Consensus       130 ~g~i~~Lv~lL--------~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll-~~~~~~~~~~A~~~L~  200 (314)
                       +.+..++..+        .+++...+........++.+|...+++  -   ...++.+..++ +++++.++..++.+|.
T Consensus        74 -~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~--g---~~ll~~ls~~L~~~~~~~~~alale~l~  147 (234)
T PF12530_consen   74 -PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH--G---VDLLPLLSGCLNQSCDEVAQALALEALA  147 (234)
T ss_pred             -HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh--H---HHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence             3344444331        111111233333345677777765552  1   23677888888 7788889999999999


Q ss_pred             Hhhc
Q 021317          201 SLCQ  204 (314)
Q Consensus       201 ~L~~  204 (314)
                      .||.
T Consensus       148 ~Lc~  151 (234)
T PF12530_consen  148 PLCE  151 (234)
T ss_pred             HHHH
Confidence            9994

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	314
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-33
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	8e-29
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-28
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-27
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-20
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-19
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	6e-15
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-13
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	7e-32
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-29
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-28
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-27
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-26
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-22
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-14
3nmz_A	458	APC variant protein; protein-protein complex, arma	3e-31
3nmz_A	458	APC variant protein; protein-protein complex, arma	3e-28
3nmz_A	458	APC variant protein; protein-protein complex, arma	3e-20
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-19
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-15
3nmz_A	458	APC variant protein; protein-protein complex, arma	4e-14
3nmz_A	458	APC variant protein; protein-protein complex, arma	7e-06
3nmz_A	458	APC variant protein; protein-protein complex, arma	7e-06
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	6e-31
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	6e-30
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	3e-27
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	4e-21
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	6e-11
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	3e-09
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-30
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	6e-22
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-21
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	1e-10
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	5e-29
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	2e-21
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	2e-18
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	7e-29
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	7e-29
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-26
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-26
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	9e-21
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-14
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-23
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	6e-23
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-18
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	3e-18
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	6e-12
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-22
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	5e-21
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-16
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-16
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	5e-13
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-09
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-05
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	9e-21
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	2e-20
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	7e-18
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	2e-17
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	5e-14
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	2e-13
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	9e-21
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	9e-15
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	5e-13
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	5e-20
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-17
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	4e-12
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-07
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-04
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	8e-19
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	2e-17
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	2e-07
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	3e-04
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	9e-19
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-17
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	3e-16
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	1e-11
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	6e-07
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-05
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	3e-16
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	5e-12
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	1e-08
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	2e-08
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
3grl_A	651	General vesicular transport factor P115; vesicle t	7e-07
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	5e-05
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	7e-05
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	1e-04
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	9e-04
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	1e-04
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	2e-04

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  128 bits (323), Expect = 1e-33
 Identities = 50/226 (22%), Positives = 91/226 (40%), Gaps = 10/226 (4%)

Query: 33  LWQLSKTR-NKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAASG 90
           L  LS  R   + I  +G IP LV++L     ++   A   +  L       K A+  +G
Sbjct: 84  LHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG 143

Query: 91  AAPLLVQILHSGSVQGRVDAVTALHYLS-TCKENSSPILDATAVPPLINLLKDCKKYSKF 149
               +V +L+  +V+        L  L+   +E+   IL +     L+N+++    Y K 
Sbjct: 144 GLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT-YTYEKL 202

Query: 150 AEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDK 209
               + +L++LS     + AI  + GG+  L   + D S    Q+ +  L +L     D 
Sbjct: 203 LWTTSRVLKVLSVCSSNKPAIVEA-GGMQALGLHLTDPSQRLVQNCLWTLRNLS----DA 257

Query: 210 YRQLILKEGAIPGLLRLTVEGTFEAQERA-RTLLDLLRDTPQEKRL 254
             +    EG +  L++L           A   L +L  +  + K +
Sbjct: 258 ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMM 303

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  114 bits (288), Expect = 8e-29
 Identities = 44/216 (20%), Positives = 80/216 (37%), Gaps = 6/216 (2%)

Query: 41  NKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAA-PLLVQIL 99
                    AIP L +LL  ++  +   AA  +  LS    ++ AI  S      +V+ +
Sbjct: 9   QDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 68

Query: 100 -HSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLE 158
            ++  V+        LH LS  +E    I  +  +P L+ +L        F    T L  
Sbjct: 69  QNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLF-YAITTLHN 127

Query: 159 ILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEG 218
           +L   E  ++A+  + GG+  +V  +   ++         L  L      + + +IL  G
Sbjct: 128 LLLHQEGAKMAVRLA-GGLQKMVALLNKTNVKFLAITTDCLQILAYGN-QESKLIILASG 185

Query: 219 AIPGLLRLTVEGTFEA-QERARTLLDLLRDTPQEKR 253
               L+ +    T+E        +L +L      K 
Sbjct: 186 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP 221

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  112 bits (283), Expect = 4e-28
 Identities = 49/236 (20%), Positives = 88/236 (37%), Gaps = 9/236 (3%)

Query: 33  LWQLSKTR--NKVKIATAGAIPPLVELLKF-QNGTLRELAAAAILTLSAAAPNKPAIAAS 89
           + QLSK        + +   +  +V  ++   +       A  +  LS       AI  S
Sbjct: 41  VHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKS 100

Query: 90  GAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSP-ILDATAVPPLINLLKDCKKYSK 148
           G  P LV++L S        A+T LH L   +E +   +  A  +  ++ LL       K
Sbjct: 101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK--TNVK 158

Query: 149 FAEKATALLEILS-SSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCR 207
           F    T  L+IL+  ++E ++ I  S GG   LV  +   +          +L +   C 
Sbjct: 159 FLAITTDCLQILAYGNQESKLIILAS-GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS 217

Query: 208 DKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIV 263
              +  I++ G +  L     + +    +     L  L D   ++     +L  +V
Sbjct: 218 S-NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLV 272

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  110 bits (277), Expect = 2e-27
 Identities = 46/211 (21%), Positives = 73/211 (34%), Gaps = 8/211 (3%)

Query: 33  LWQLSKTR-NKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGA 91
           L  LS    NK  I  AG +  L   L   +  L +     +  LS AA  +  +   G 
Sbjct: 210 LKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGME--GL 267

Query: 92  APLLVQILHSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFA 150
              LVQ+L S  +     A   L  L+    +N   +     +  L+  +          
Sbjct: 268 LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 327

Query: 151 EKATALLEILSS---SEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCR 207
           E A   L  L+S     E          G+  +V+ +   S      A   L+    +  
Sbjct: 328 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL-ALC 386

Query: 208 DKYRQLILKEGAIPGLLRLTVEGTFEAQERA 238
                 + ++GAIP L++L V    + Q R 
Sbjct: 387 PANHAPLREQGAIPRLVQLLVRAHQDTQRRT 417

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 89.8 bits (223), Expect = 3e-20
 Identities = 36/185 (19%), Positives = 68/185 (36%), Gaps = 7/185 (3%)

Query: 72  AILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPIL-DA 130
           A++ L        A  A+ A P L ++L+         A   +H LS  + +   I+   
Sbjct: 1   AVVNL--INYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSP 58

Query: 131 TAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLV 190
             V  ++  +++       A      L  LS   EG +AI  S GGI  LV+ +      
Sbjct: 59  QMVSAIVRTMQNTNDVET-ARCTAGTLHNLSHHREGLLAIFKS-GGIPALVKMLGSPVDS 116

Query: 191 STQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERA-RTLLDLLRDTP 249
              +A+  L +L    ++  +  +   G +  ++ L  +   +        L  L     
Sbjct: 117 VLFYAITTLHNLLLH-QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 175

Query: 250 QEKRL 254
           + K +
Sbjct: 176 ESKLI 180

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 87.5 bits (217), Expect = 2e-19
 Identities = 37/199 (18%), Positives = 57/199 (28%), Gaps = 25/199 (12%)

Query: 41  NKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQIL 99
            +  +     +P +V+LL   +      A   ++   A  P N   +   GA P LVQ+L
Sbjct: 347 AQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 406

Query: 100 HSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEI 159
                  +                                  +  +  +  E  T  L I
Sbjct: 407 VRAHQDTQRRTSMGG---------------------TQQQFVEGVRMEEIVEGCTGALHI 445

Query: 160 LSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGA 219
           L+     RI I      I   V+ +        + A G L  L Q    +  + I  EGA
Sbjct: 446 LARDVHNRIVIRGL-NTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAIEAEGA 502

Query: 220 IPGLLRLTVEGTFEAQERA 238
              L  L           A
Sbjct: 503 TAPLTELLHSRNEGVATYA 521

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 74.0 bits (182), Expect = 6e-15
 Identities = 36/143 (25%), Positives = 51/143 (35%), Gaps = 24/143 (16%)

Query: 41  NKVKIATAGAIPPLVELLK----------------------FQNGTLRELAAAAILTLSA 78
           N   +   GAIP LV+LL                        +   + E    A+  L+ 
Sbjct: 389 NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR 448

Query: 79  AAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLIN 138
              N+  I      PL VQ+L+S     +  A   L  L+  KE +  I    A  PL  
Sbjct: 449 DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTE 508

Query: 139 LLKDCKKYSKFAEKATALLEILS 161
           LL    +    A  A A+L  +S
Sbjct: 509 LLHS--RNEGVATYAAAVLFRMS 529

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 69.0 bits (169), Expect = 3e-13
 Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 1/90 (1%)

Query: 30  MGPLWQLSK-TRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAA 88
            G L  L++   N++ I     IP  V+LL      ++ +AA  +  L+       AI A
Sbjct: 440 TGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEA 499

Query: 89  SGAAPLLVQILHSGSVQGRVDAVTALHYLS 118
            GA   L ++LHS +      A   L  +S
Sbjct: 500 EGATAPLTELLHSRNEGVATYAAAVLFRMS 529

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  124 bits (312), Expect = 7e-32
 Identities = 50/226 (22%), Positives = 90/226 (39%), Gaps = 10/226 (4%)

Query: 33  LWQLSKTR-NKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSA-AAPNKPAIAASG 90
           L  LS  R   + I  +G IP LV +L     ++   A   +  L       K A+  +G
Sbjct: 217 LHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAG 276

Query: 91  AAPLLVQILHSGSVQGRVDAVTALHYLST-CKENSSPILDATAVPPLINLLKDCKKYSKF 149
               +V +L+  +V+        L  L+   +E+   IL +     L+N+++    Y K 
Sbjct: 277 GLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT-YTYEKL 335

Query: 150 AEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDK 209
               + +L++LS     + AI  + GG+  L   + D S    Q+ +  L +L     D 
Sbjct: 336 LWTTSRVLKVLSVCSSNKPAIVEA-GGMQALGLHLTDPSQRLVQNCLWTLRNLS----DA 390

Query: 210 YRQLILKEGAIPGLLRLTVEGTFEAQERA-RTLLDLLRDTPQEKRL 254
             +    EG +  L++L           A   L +L  +  + K +
Sbjct: 391 ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMM 436

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  117 bits (295), Expect = 1e-29
 Identities = 61/296 (20%), Positives = 100/296 (33%), Gaps = 35/296 (11%)

Query: 33  LWQLSK--TRNKVKIATAGAIPPLVELLKFQNGT--LRELAAAAILTLSAAAPNKP---- 84
           L  L+    +NK+ +   G I  LV  +        + E A  A+  L++   +      
Sbjct: 423 LSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQN 482

Query: 85  AIAASGAAPLLVQILHSGSVQGRVDAVTAL-HYLSTCKENSSPILDATAVPPLINLLK-- 141
           A+      P++V++LH  S    + A   L   L+ C  N +P+ +  A+P L+ LL   
Sbjct: 483 AVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRA 542

Query: 142 ------------------DCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVET 183
                             +  +  +  E  T  L IL+     RI I      I   V+ 
Sbjct: 543 HQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGL-NTIPLFVQL 601

Query: 184 VEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERA-RTLL 242
           +        + A G L  L Q    +  + I  EGA   L  L           A   L 
Sbjct: 602 LYSPIENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 659

Query: 243 DLLRDTPQE--KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELSM 296
            +  D PQ+  KRLS  +   +        +             + +  R  + S 
Sbjct: 660 RMSEDKPQDYKKRLSVELTSSLFRTEPMTWNETGDLGLDIGAQGEPLGYRQDDPSY 715

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  114 bits (286), Expect = 2e-28
 Identities = 45/217 (20%), Positives = 81/217 (37%), Gaps = 6/217 (2%)

Query: 40  RNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAAS-GAAPLLVQI 98
                     AIP L +LL  ++  +   AA  +  LS    ++ AI  S      +V+ 
Sbjct: 141 YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT 200

Query: 99  LHSGS-VQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALL 157
           + + + V+        LH LS  +E    I  +  +P L+N+L        F    T L 
Sbjct: 201 MQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLF-HAITTLH 259

Query: 158 EILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKE 217
            +L   E  ++A+  + GG+  +V  +   ++         L  L      + + +IL  
Sbjct: 260 NLLLHQEGAKMAVRLA-GGLQKMVALLNKTNVKFLAITTDCLQILAYGN-QESKLIILAS 317

Query: 218 GAIPGLLRLTVEGTFEA-QERARTLLDLLRDTPQEKR 253
           G    L+ +    T+E        +L +L      K 
Sbjct: 318 GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP 354

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  111 bits (279), Expect = 2e-27
 Identities = 50/236 (21%), Positives = 88/236 (37%), Gaps = 9/236 (3%)

Query: 33  LWQLSKT--RNKVKIATAGAIPPLVELLKFQNGT-LRELAAAAILTLSAAAPNKPAIAAS 89
           + QLSK        + +   +  +V  ++  N        +  +  LS       AI  S
Sbjct: 174 VHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKS 233

Query: 90  GAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSP-ILDATAVPPLINLLKDCKKYSK 148
           G  P LV +L S        A+T LH L   +E +   +  A  +  ++ LL   K   K
Sbjct: 234 GGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN--KTNVK 291

Query: 149 FAEKATALLEILS-SSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCR 207
           F    T  L+IL+  ++E ++ I  S GG   LV  +   +          +L +   C 
Sbjct: 292 FLAITTDCLQILAYGNQESKLIILAS-GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC- 349

Query: 208 DKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIV 263
              +  I++ G +  L     + +    +     L  L D   ++     +L  +V
Sbjct: 350 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLV 405

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  108 bits (271), Expect = 2e-26
 Identities = 42/213 (19%), Positives = 76/213 (35%), Gaps = 11/213 (5%)

Query: 33  LWQLS--KTRNKVKIATAGAIPPLVELLKFQNGT-LRELAAAAILTLSAAAPNKPAIAAS 89
           L  L+     +K+ I  +G    LV +++      L    +  +  LS  + NKPAI  +
Sbjct: 300 LQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEA 359

Query: 90  GAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKF 149
           G    L   L   S +   + +  L  LS              +  L+ LL         
Sbjct: 360 GGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVV- 416

Query: 150 AEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVST--QHAVGALLSLCQSCR 207
              A  L  +  ++ + ++ +    GGI  LV TV          + A+ AL  L    +
Sbjct: 417 TCAAGILSNLTCNNYKNKMMVCQV-GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 475

Query: 208 D--KYRQLILKEGAIPGLLRLTVEGTFEAQERA 238
           D    +  +     +P +++L    +     +A
Sbjct: 476 DAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA 508

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 97.4 bits (242), Expect = 1e-22
 Identities = 43/233 (18%), Positives = 80/233 (34%), Gaps = 16/233 (6%)

Query: 35  QLSKTRNK-------VKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA----PNK 83
           Q + TR +        +    G   P  +        ++ LA  + +   A         
Sbjct: 84  QYAMTRAQRVRAAMFPETLDEGMQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQD 143

Query: 84  PAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPIL-DATAVPPLINLLKD 142
            A  A+ A P L ++L+         A   +H LS  + +   I+     V  ++  +++
Sbjct: 144 DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN 203

Query: 143 CKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSL 202
                  A   +  L  LS   EG +AI  S GGI  LV  +         HA+  L +L
Sbjct: 204 TNDVET-ARCTSGTLHNLSHHREGLLAIFKS-GGIPALVNMLGSPVDSVLFHAITTLHNL 261

Query: 203 CQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERA-RTLLDLLRDTPQEKRL 254
               ++  +  +   G +  ++ L  +   +        L  L     + K +
Sbjct: 262 LLH-QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI 313

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 72.8 bits (178), Expect = 2e-14
 Identities = 28/113 (24%), Positives = 44/113 (38%), Gaps = 4/113 (3%)

Query: 31  GPLWQLSKT-RNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAAS 89
           G L  L++   N++ I     IP  V+LL      ++ +AA  +  L+       AI A 
Sbjct: 574 GALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAE 633

Query: 90  GAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKD 142
           GA   L ++LHS +      A   L  +S   E+            L + L  
Sbjct: 634 GATAPLTELLHSRNEGVATYAAAVLFRMS---EDKPQDYKKRLSVELTSSLFR 683

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  120 bits (303), Expect = 3e-31
 Identities = 47/231 (20%), Positives = 92/231 (39%), Gaps = 15/231 (6%)

Query: 36  LSKTRNKVKI-ATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP--NKPAIAASGAA 92
                NK  + +  G +  LV  LK ++  L+++ A+ +  LS  A   +K  +   G+ 
Sbjct: 229 FGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSV 288

Query: 93  PLLVQILHSGSVQG-RVDAVTALHYLST-CKENSSPILDAT-AVPPLINLL--KDCKKYS 147
             L++       +      ++AL  LS  C EN + I     A+  L+  L  +      
Sbjct: 289 KALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTL 348

Query: 148 KFAEKATALLEILSS----SEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLC 203
              E    +L  +SS    +E+ R  +  +   + TL++ ++  SL    +A G L +L 
Sbjct: 349 AIIESGGGILRNVSSLIATNEDHRQILREN-NCLQTLLQHLKSHSLTIVSNACGTLWNLS 407

Query: 204 QSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERA-RTLLDLLRDTPQEKR 253
                  ++ +   GA+  L  L           +   L +L+ + P + +
Sbjct: 408 ARNPK-DQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYK 457

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  112 bits (281), Expect = 3e-28
 Identities = 51/253 (20%), Positives = 95/253 (37%), Gaps = 23/253 (9%)

Query: 25  RRLNLMGPLWQLS-KTRNKVKIATAGAIPPLVELLKF-----------QNGTLRELAAAA 72
           +    +  L +LS    ++  +   G +  + ELL+             + TLR  A  A
Sbjct: 164 QICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMA 223

Query: 73  ILTLSAA-APNKPAIAAS-GAAPLLVQILHSGSVQGRVDAVTALHYLS--TCKENSSPIL 128
           +  L+     NK  + +  G    LV  L S S   +    + L  LS      +   + 
Sbjct: 224 LTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLR 283

Query: 129 DATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGS 188
           +  +V  L+    + KK S      +AL  + +   E +  I   DG +  LV T+   S
Sbjct: 284 EVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRS 343

Query: 189 LVST----QHAVGALLSLCQSC--RDKYRQLILKEGAIPGLLRLTVEGTFEAQERA-RTL 241
             +T    +   G L ++       + +RQ++ +   +  LL+     +      A  TL
Sbjct: 344 QTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTL 403

Query: 242 LDLLRDTPQEKRL 254
            +L    P+++  
Sbjct: 404 WNLSARNPKDQEA 416

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 89.6 bits (222), Expect = 3e-20
 Identities = 40/278 (14%), Positives = 89/278 (32%), Gaps = 50/278 (17%)

Query: 26  RLNLMGPLWQLSKTR-NKVKIATAGAIPPLVELLKFQ------------NGTLRELAAAA 72
           + ++   L  +S ++ + + +  +G +P L++LL               +   R  A+AA
Sbjct: 46  KDDMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAA 105

Query: 73  ILTLSAAAPNKP-AIAASGAAPLLVQI------------------------LHSGSVQGR 107
           +  +  + P+            LL QI                        + +      
Sbjct: 106 LHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQI 165

Query: 108 VDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEK----------ATALL 157
             AV  L  LS  +E+   + +   +  +  LL+   +                   AL 
Sbjct: 166 CPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALT 225

Query: 158 EILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKE 217
            +       +  + +  G +  LV  ++  S    Q     L +L        ++ + + 
Sbjct: 226 NLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREV 285

Query: 218 GAIPGLLRLTVEGTFEA--QERARTLLDLLRDTPQEKR 253
           G++  L+   +E   E+  +     L +L     + K 
Sbjct: 286 GSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA 323

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 87.3 bits (216), Expect = 2e-19
 Identities = 32/184 (17%), Positives = 66/184 (35%), Gaps = 13/184 (7%)

Query: 40  RNKVKIATAGAIPPLVELLKF-QNGTLRELAAAAILTLSAAAP-NKPAIA-ASGAAPLLV 96
            +K  +   G++  L+E     +  +  +   +A+  LSA    NK  I    GA   LV
Sbjct: 277 NSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLV 336

Query: 97  QILHSGSVQGRVD----AVTALHYLS----TCKENSSPILDATAVPPLINLLKDCKKYSK 148
             L   S    +         L  +S    T +++   + +   +  L+  LK       
Sbjct: 337 GTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIV 396

Query: 149 FAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRD 208
            +     L  + + + + + A+ +  G +  L   +     +    +  AL +L  +   
Sbjct: 397 -SNACGTLWNLSARNPKDQEALWDM-GAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 454

Query: 209 KYRQ 212
           KY+ 
Sbjct: 455 KYKD 458

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 75.4 bits (185), Expect = 2e-15
 Identities = 36/219 (16%), Positives = 75/219 (34%), Gaps = 19/219 (8%)

Query: 24  ARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNK 83
            R L+L+  +    +T  + + A    +      +          A   ++ LS    ++
Sbjct: 123 IRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHR 182

Query: 84  PAIAASGAAPLLVQILHSG-----------SVQGRVDAVTALHYLSTCKENSSPILDAT- 131
            A+   G    + ++L              S+  R  A  AL  L+     +   L +  
Sbjct: 183 HAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK 242

Query: 132 -AVPPLINLLKDCKKYSKFAEKATALLEILS--SSEEGRIAITNSDGGILTLVETVEDGS 188
             +  L+  LK   +     +   ++L  LS  +    +  +    G +  L+E   +  
Sbjct: 243 GCMRALVAQLKS--ESEDLQQVIASVLRNLSWRADVNSKKTLREV-GSVKALMECALEVK 299

Query: 189 LVSTQ-HAVGALLSLCQSCRDKYRQLILKEGAIPGLLRL 226
             ST    + AL +L   C +    +   +GA+  L+  
Sbjct: 300 KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGT 338

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 71.5 bits (175), Expect = 4e-14
 Identities = 44/248 (17%), Positives = 84/248 (33%), Gaps = 48/248 (19%)

Query: 54  LVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHS------------ 101
           +  LL       ++  +  +L +S++  +  ++  SG  PLL+Q+LH             
Sbjct: 34  VYSLLSMLGTHDKDDMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSR 93

Query: 102 GSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKD----CKKYSKFA------- 150
           GS + R  A  ALH +   + +         V  L+  ++     C ++ +         
Sbjct: 94  GSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQD 153

Query: 151 ------------EKATALLEILSSSEEGRIAITNSDGGILTLVE----------TVEDGS 188
                         A  +L  LS  EE R A+    GG+  + E             D  
Sbjct: 154 KNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNEL-GGLQAIAELLQVDCEMYGLTNDHY 212

Query: 189 LVSTQ-HAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERA-RTLLDLLR 246
            ++ + +A  AL +L          L   +G +  L+      + + Q+     L +L  
Sbjct: 213 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSW 272

Query: 247 DTPQEKRL 254
                 + 
Sbjct: 273 RADVNSKK 280

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 46.1 bits (109), Expect = 7e-06
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 33  LWQLSK--TRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNK 83
           LW LS    +++  +   GA+  L  L+  ++  +   +AAA+  L A  P K
Sbjct: 403 LWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 455

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 46.1 bits (109), Expect = 7e-06
 Identities = 21/186 (11%), Positives = 52/186 (27%), Gaps = 36/186 (19%)

Query: 75  TLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVP 134
            +   +  +          ++  +L       + D    L  +S+ +++   +  +  +P
Sbjct: 14  LVPRGSHMRLTSHLGTKVEMVYSLLSMLGTHDKDDMSRTLLAMSSSQDSCISMRQSGCLP 73

Query: 135 PLINLLKD------------------------------CKKYSKFAEKATALLEIL---- 160
            LI LL                                 +   K   +   +L +L    
Sbjct: 74  LLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIR 133

Query: 161 SSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAI 220
           +  E         + G+      +          AV  L+ L     +++R  + + G +
Sbjct: 134 AYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD--EEHRHAMNELGGL 191

Query: 221 PGLLRL 226
             +  L
Sbjct: 192 QAIAEL 197

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  115 bits (291), Expect = 6e-31
 Identities = 55/207 (26%), Positives = 99/207 (47%), Gaps = 5/207 (2%)

Query: 41  NKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQIL 99
               +  AGA+P LV+LL   N  + + A  A+  +++       A+  +GA P LVQ+L
Sbjct: 46  QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL 105

Query: 100 HSGSVQGRVDAVTALHYLST-CKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLE 158
            S + Q   +A+ AL  +++   E    ++DA A+P L+ LL    +     E   AL  
Sbjct: 106 SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL-QEALWALSN 164

Query: 159 ILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEG 218
           I S   E   A+ ++ G +  LV+ +   +    Q A+ AL ++     ++ +Q + + G
Sbjct: 165 IASGGNEQIQAVIDA-GALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAG 222

Query: 219 AIPGLLRLTVEGTFEAQERARTLLDLL 245
           A+  L +L      + Q+ A+  L+ L
Sbjct: 223 ALEKLEQLQSHENEKIQKEAQEALEKL 249

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  113 bits (284), Expect = 6e-30
 Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 4/166 (2%)

Query: 40  RNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQI 98
                +  AGA+P LV+LL   N  + + A  A+  +++       A+  +GA P LVQ+
Sbjct: 87  EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 146

Query: 99  LHSGSVQGRVDAVTALHYLST-CKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALL 157
           L S + Q   +A+ AL  +++   E    ++DA A+P L+ LL    +     E   AL 
Sbjct: 147 LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL-QEALWALS 205

Query: 158 EILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLC 203
            I S   E + A+  + G +  L +     +    + A  AL  L 
Sbjct: 206 NIASGGNEQKQAVKEA-GALEKLEQLQSHENEKIQKEAQEALEKLQ 250

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  105 bits (265), Expect = 3e-27
 Identities = 47/221 (21%), Positives = 97/221 (43%), Gaps = 8/221 (3%)

Query: 48  AGAIPPLVELLKFQNGTLRELAAAAILTLSAA-APNKPAIAASGAAPLLVQILHSGSVQG 106
              +P + + L   +   +  A      + +       A+  +GA P LVQ+L S + Q 
Sbjct: 11  GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQI 70

Query: 107 RVDAVTALHYLST-CKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEE 165
             +A+ AL  +++   E    ++DA A+P L+ LL    +  +  ++A   L  ++S   
Sbjct: 71  LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE--QILQEALWALSNIASGGN 128

Query: 166 GRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLR 225
            +I      G +  LV+ +   +    Q A+ AL ++     ++  Q ++  GA+P L++
Sbjct: 129 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ-IQAVIDAGALPALVQ 187

Query: 226 LTVEGTFEAQERA-RTLLDLLRDTPQEKRL--SSSVLEKIV 263
           L      +  + A   L ++     ++K+    +  LEK+ 
Sbjct: 188 LLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLE 228

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 89.3 bits (222), Expect = 4e-21
 Identities = 37/174 (21%), Positives = 73/174 (41%), Gaps = 5/174 (2%)

Query: 82  NKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYL-STCKENSSPILDATAVPPLINLL 140
           +          P + Q L+S  +Q ++ A      + S   E    ++DA A+P L+ LL
Sbjct: 4   SHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLL 63

Query: 141 KDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALL 200
               +     E   AL  I S   E   A+ ++ G +  LV+ +   +    Q A+ AL 
Sbjct: 64  SSPNEQILQ-EALWALSNIASGGNEQIQAVIDA-GALPALVQLLSSPNEQILQEALWALS 121

Query: 201 SLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERA-RTLLDLLRDTPQEKR 253
           ++     ++  Q ++  GA+P L++L      +  + A   L ++     ++ +
Sbjct: 122 NIASGG-NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 174

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 60.8 bits (148), Expect = 6e-11
 Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 3/90 (3%)

Query: 33  LWQLS--KTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAAS 89
           L  ++         +  AGA+P LV+LL   N  + + A  A+  +++     K A+  +
Sbjct: 162 LSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEA 221

Query: 90  GAAPLLVQILHSGSVQGRVDAVTALHYLST 119
           GA   L Q+    + + + +A  AL  L +
Sbjct: 222 GALEKLEQLQSHENEKIQKEAQEALEKLQS 251

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 55.8 bits (135), Expect = 3e-09
 Identities = 23/135 (17%), Positives = 54/135 (40%), Gaps = 4/135 (2%)

Query: 121 KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTL 180
           + +       + +P +   L       +         +ILS   E   A+ ++ G +  L
Sbjct: 2   RGSHHHHHHGSELPQMTQQLNSDDMQEQL-SATRKFSQILSDGNEQIQAVIDA-GALPAL 59

Query: 181 VETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERA-R 239
           V+ +   +    Q A+ AL ++  S  ++  Q ++  GA+P L++L      +  + A  
Sbjct: 60  VQLLSSPNEQILQEALWALSNIA-SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 118

Query: 240 TLLDLLRDTPQEKRL 254
            L ++     ++ + 
Sbjct: 119 ALSNIASGGNEQIQA 133

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  113 bits (285), Expect = 2e-30
 Identities = 48/207 (23%), Positives = 93/207 (44%), Gaps = 5/207 (2%)

Query: 41  NKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQIL 99
           +         +P +V+ L   +    + A   +  +++       A+  +GA P LVQ+L
Sbjct: 4   SHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLL 63

Query: 100 HSGSVQGRVDAVTALHYLST-CKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLE 158
            S + Q   +A+ AL  +++   E    ++DA A+P L+ LL    +     E   AL  
Sbjct: 64  SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL-QEALWALSN 122

Query: 159 ILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEG 218
           I S   E   A+ ++ G +  LV+ +   +    Q A+ AL ++     ++ +Q + + G
Sbjct: 123 IASGGNEQIQAVIDA-GALPALVQLLSSPNEQILQEALWALSNIASGGNEQ-KQAVKEAG 180

Query: 219 AIPGLLRLTVEGTFEAQERARTLLDLL 245
           A+  L +L      + Q+ A+  L+ L
Sbjct: 181 ALEKLEQLQSHENEKIQKEAQEALEKL 207

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 90.8 bits (226), Expect = 6e-22
 Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 4/124 (3%)

Query: 41  NKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQIL 99
               +  AGA+P LV+LL   N  + + A  A+  +++       A+  +GA P LVQ+L
Sbjct: 88  QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL 147

Query: 100 HSGSVQGRVDAVTALHYLST-CKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLE 158
            S + Q   +A+ AL  +++   E    + +A A+  L  L     +  K  ++A   LE
Sbjct: 148 SSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH--ENEKIQKEAQEALE 205

Query: 159 ILSS 162
            L S
Sbjct: 206 KLQS 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 89.6 bits (223), Expect = 2e-21
 Identities = 46/179 (25%), Positives = 79/179 (44%), Gaps = 14/179 (7%)

Query: 33  LWQLSKTR--NKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAAS 89
           L Q++         +  AGA+P LV+LL   N  + + A  A+  +++       A+  +
Sbjct: 36  LSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA 95

Query: 90  GAAPLLVQILHSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLK----DCK 144
           GA P LVQ+L S + Q   +A+ AL  +++   E    ++DA A+P L+ LL        
Sbjct: 96  GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 155

Query: 145 KYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLC 203
           + +       AL  I S   E + A+  + G +  L +     +    + A  AL  L 
Sbjct: 156 QEA-----LWALSNIASGGNEQKQAVKEA-GALEKLEQLQSHENEKIQKEAQEALEKLQ 208

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 59.6 bits (145), Expect = 1e-10
 Identities = 23/134 (17%), Positives = 55/134 (41%), Gaps = 4/134 (2%)

Query: 121 KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTL 180
           + +       + +P ++  L    +          L +I S   E   A+ ++ G +  L
Sbjct: 2   RGSHHHHHHGSELPQMVQQLNSPDQQEL-QSALRKLSQIASGGNEQIQAVIDA-GALPAL 59

Query: 181 VETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERA-R 239
           V+ +   +    Q A+ AL ++  S  ++  Q ++  GA+P L++L      +  + A  
Sbjct: 60  VQLLSSPNEQILQEALWALSNIA-SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 118

Query: 240 TLLDLLRDTPQEKR 253
            L ++     ++ +
Sbjct: 119 ALSNIASGGNEQIQ 132

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  113 bits (283), Expect = 5e-29
 Identities = 56/302 (18%), Positives = 106/302 (35%), Gaps = 28/302 (9%)

Query: 33  LWQLSKTR-NKVKIATAGAIPPLVELLKF-----------QNGTLRELAAAAILTLSAA- 79
           L +LS    ++  +   G +  + ELL+             + TLR  A  A+  L+   
Sbjct: 56  LMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGD 115

Query: 80  APNKPAIAAS-GAAPLLVQILHSGSVQGRVDAVTALHYLS--TCKENSSPILDATAVPPL 136
             NK  + +  G    LV  L S S   +    + L  LS      +   + +  +V  L
Sbjct: 116 VANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 175

Query: 137 INLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETV----EDGSLVST 192
           +    + KK S      +AL  + +   E +  I   DG +  LV T+    +  +L   
Sbjct: 176 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAII 235

Query: 193 QHAVGALLSLCQSC--RDKYRQLILKEGAIPGLLRLTVEGTFEAQERA-RTLLDLLRDTP 249
           +   G L ++       + +RQ++ +   +  LL+     +      A  TL +L    P
Sbjct: 236 ESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNP 295

Query: 250 QEKRL--SSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELSMTRIQQRAASSA 307
           +++        +  +              A  +   L++++                SS 
Sbjct: 296 KDQEALWDMGAVSMLK---NLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIMSPGSSL 352

Query: 308 PS 309
           PS
Sbjct: 353 PS 354

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 91.8 bits (228), Expect = 2e-21
 Identities = 31/206 (15%), Positives = 66/206 (32%), Gaps = 19/206 (9%)

Query: 37  SKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLV 96
            +T  + + A    +      +          A   ++ LS    ++ A+   G    + 
Sbjct: 20  CETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIA 79

Query: 97  QILHSGSVQGRVD-----------AVTALHYLSTCKENSSPILDAT--AVPPLINLLKDC 143
           ++L        +            A  AL  L+     +   L +    +  L+  LK  
Sbjct: 80  ELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKS- 138

Query: 144 KKYSKFAEKATALLEILSS--SEEGRIAITNSDGGILTLVETVEDGSLVSTQ-HAVGALL 200
            +     +   ++L  LS       +  +    G +  L+E   +    ST    + AL 
Sbjct: 139 -ESEDLQQVIASVLRNLSWRADVNSKKTLREV-GSVKALMECALEVKKESTLKSVLSALW 196

Query: 201 SLCQSCRDKYRQLILKEGAIPGLLRL 226
           +L   C +    +   +GA+  L+  
Sbjct: 197 NLSAHCTENKADICAVDGALAFLVGT 222

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 83.4 bits (206), Expect = 2e-18
 Identities = 27/203 (13%), Positives = 59/203 (29%), Gaps = 15/203 (7%)

Query: 66  RELAAAAILTLSAA---APNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKE 122
                  +L    A      +   A           + +        AV  L  LS  +E
Sbjct: 5   HHHHMLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEE 64

Query: 123 NSSPILDATAVPPLINLLKDCKKYSKFAEK----------ATALLEILSSSEEGRIAITN 172
           +   + +   +  +  LL+   +                   AL  +       +  + +
Sbjct: 65  HRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124

Query: 173 SDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTF 232
             G +  LV  ++  S    Q     L +L        ++ + + G++  L+   +E   
Sbjct: 125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKK 184

Query: 233 EA--QERARTLLDLLRDTPQEKR 253
           E+  +     L +L     + K 
Sbjct: 185 ESTLKSVLSALWNLSAHCTENKA 207

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  115 bits (289), Expect = 7e-29
 Identities = 61/313 (19%), Positives = 99/313 (31%), Gaps = 35/313 (11%)

Query: 33  LWQLSK--TRNKVKIATAGAIPPLVELLKFQNGT--LRELAAAAILTLSAAAPNKP---- 84
           L  L+    +NK+ +   G I  LV  +        + E A  A+  L++          
Sbjct: 287 LSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQN 346

Query: 85  AIAASGAAPLLVQILHSGSVQGRVDAVTAL-HYLSTCKENSSPILDATAVPPLINLLKDC 143
           A+      P++V++LH  S    + A   L   L+ C  N +P+ +  A+P L+ LL   
Sbjct: 347 AVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRA 406

Query: 144 --------------------KKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVET 183
                                +  +  E  T  L IL+     RI I      I   V+ 
Sbjct: 407 HQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGL-NTIPLFVQL 465

Query: 184 VEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERA-RTLL 242
           +        + A G L  L Q    +  + I  EGA   L  L           A   L 
Sbjct: 466 LYSPIENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 523

Query: 243 DLLRDTPQE--KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELSMTRIQ 300
            +  D PQ+  KRLS  +   +        +             + +  R  + S     
Sbjct: 524 RMSEDKPQDYKKRLSVELTSSLFRTEPMAWNETADLGLDIGAQGEPLGYRQDDPSYRSFH 583

Query: 301 QRAASSAPSKIPS 313
                     +  
Sbjct: 584 SGGYGQDALGMDP 596

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  115 bits (289), Expect = 7e-29
 Identities = 44/212 (20%), Positives = 81/212 (38%), Gaps = 6/212 (2%)

Query: 45  IATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAA-PLLVQIL-HSG 102
                AIP L +LL  ++  +   AA  +  LS    ++ AI  S      +V+ + ++ 
Sbjct: 10  ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN 69

Query: 103 SVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSS 162
            V+        LH LS  +E    I  +  +P L+ +L        F    T L  +L  
Sbjct: 70  DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLF-YAITTLHNLLLH 128

Query: 163 SEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPG 222
            E  ++A+  + GG+  +V  +   ++         L  L    ++  + +IL  G    
Sbjct: 129 QEGAKMAVRLA-GGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE-SKLIILASGGPQA 186

Query: 223 LLRLTVEGTFEA-QERARTLLDLLRDTPQEKR 253
           L+ +    T+E        +L +L      K 
Sbjct: 187 LVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP 218

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  108 bits (272), Expect = 1e-26
 Identities = 49/236 (20%), Positives = 88/236 (37%), Gaps = 9/236 (3%)

Query: 33  LWQLSKTR--NKVKIATAGAIPPLVELLKF-QNGTLRELAAAAILTLSAAAPNKPAIAAS 89
           + QLSK        + +   +  +V  ++   +       A  +  LS       AI  S
Sbjct: 38  VHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKS 97

Query: 90  GAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSP-ILDATAVPPLINLLKDCKKYSK 148
           G  P LV++L S        A+T LH L   +E +   +  A  +  ++ LL       K
Sbjct: 98  GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK--TNVK 155

Query: 149 FAEKATALLEILS-SSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCR 207
           F    T  L+IL+  ++E ++ I  S GG   LV  +   +          +L +   C 
Sbjct: 156 FLAITTDCLQILAYGNQESKLIILAS-GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC- 213

Query: 208 DKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIV 263
              +  I++ G +  L     + +    +     L  L D   ++     +L  +V
Sbjct: 214 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLV 269

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  108 bits (271), Expect = 2e-26
 Identities = 42/213 (19%), Positives = 77/213 (36%), Gaps = 11/213 (5%)

Query: 33  LWQLSK--TRNKVKIATAGAIPPLVELLKFQN-GTLRELAAAAILTLSAAAPNKPAIAAS 89
           L  L+     +K+ I  +G    LV +++      L    +  +  LS  + NKPAI  +
Sbjct: 164 LQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEA 223

Query: 90  GAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKF 149
           G    L   L   S +   + +  L  LS              +  L+ LL         
Sbjct: 224 GGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVV- 280

Query: 150 AEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVS--TQHAVGALLSLCQSCR 207
              A  L  +  ++ + ++ +    GGI  LV TV         T+ A+ AL  L    +
Sbjct: 281 TCAAGILSNLTCNNYKNKMMVCQV-GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 339

Query: 208 D--KYRQLILKEGAIPGLLRLTVEGTFEAQERA 238
           +    +  +     +P +++L    +     +A
Sbjct: 340 EAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA 372

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 91.9 bits (228), Expect = 9e-21
 Identities = 34/172 (19%), Positives = 65/172 (37%), Gaps = 5/172 (2%)

Query: 85  AIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPIL-DATAVPPLINLLKDC 143
           A  A+ A P L ++L+         A   +H LS  + +   I+     V  ++  +++ 
Sbjct: 9   AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT 68

Query: 144 KKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLC 203
               + A      L  LS   EG +AI  S GGI  LV+ +         +A+  L +L 
Sbjct: 69  ND-VETARCTAGTLHNLSHHREGLLAIFKS-GGIPALVKMLGSPVDSVLFYAITTLHNLL 126

Query: 204 QSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERA-RTLLDLLRDTPQEKRL 254
              ++  +  +   G +  ++ L  +   +        L  L     + K +
Sbjct: 127 LH-QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI 177

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 72.7 bits (178), Expect = 2e-14
 Identities = 26/113 (23%), Positives = 45/113 (39%), Gaps = 3/113 (2%)

Query: 31  GPLWQLSK-TRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAAS 89
           G L  L++   N++ I     IP  V+LL      ++ +AA  +  L+       AI A 
Sbjct: 438 GALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAE 497

Query: 90  GAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKD 142
           GA   L ++LHS +      A   L  +   ++         +V    +L + 
Sbjct: 498 GATAPLTELLHSRNEGVATYAAAVLFRM--SEDKPQDYKKRLSVELTSSLFRT 548

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 99.6 bits (248), Expect = 1e-23
 Identities = 38/201 (18%), Positives = 71/201 (35%), Gaps = 6/201 (2%)

Query: 41  NKVKIATAGAIPPLVELLKFQN-GTLRELAAAAILTLSAAAPNKPAIAA-SGAAPLLVQI 98
            +  +     +PPL++L   QN  T+   A  A+  L       P  A  S    +L  +
Sbjct: 141 CRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWL 200

Query: 99  LHSGSVQGRVDAVTALHYLST-CKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALL 157
           L         DA  AL YLS    +    ++DA     L+ LL         +    A+ 
Sbjct: 201 LFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVV-SPALRAVG 259

Query: 158 EILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKE 217
            I++  +     I N    + +L+  +        + A   + ++  +      Q ++  
Sbjct: 260 NIVTGDDIQTQVILNC-SALQSLLHLLSSPKESIKKEACWTISNIT-AGNRAQIQTVIDA 317

Query: 218 GAIPGLLRLTVEGTFEAQERA 238
              P L+ +     F  ++ A
Sbjct: 318 NIFPALISILQTAEFRTRKEA 338

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 97.3 bits (242), Expect = 6e-23
 Identities = 46/226 (20%), Positives = 84/226 (37%), Gaps = 9/226 (3%)

Query: 36  LSKTRN---KVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA--APNKPAIAASG 90
           LSK  N      I+T G +   VE LK +     +  +A +LT  A+  +     +  +G
Sbjct: 48  LSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAG 107

Query: 91  AAPLLVQILHSGSVQGRVDAVTALHYLST-CKENSSPILDATAVPPLINLLKDCKKYSKF 149
           A P+ +++L S     +  AV AL  ++         +LD   +PPL+ L     + +  
Sbjct: 108 AVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLT-M 166

Query: 150 AEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDK 209
              A   L  L   +            +  L   +          A  AL  L     DK
Sbjct: 167 TRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDK 226

Query: 210 YRQLILKEGAIPGLLRLTVEGTFEAQERA-RTLLDLLRDTPQEKRL 254
             Q ++  G    L+ L +   ++    A R + +++     + ++
Sbjct: 227 -IQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQV 271

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 84.6 bits (209), Expect = 2e-18
 Identities = 41/205 (20%), Positives = 76/205 (37%), Gaps = 6/205 (2%)

Query: 37  SKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPN-KPAIAASGAAPLL 95
             +     +  AGA+P  +ELL  +   ++E A  A+  ++  +   +  +      P L
Sbjct: 95  GNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPL 154

Query: 96  VQILHSG-SVQGRVDAVTALHYLSTCKENSSPI-LDATAVPPLINLLKDCKKYSKFAEKA 153
           +Q+      +    +AV AL  L   K         +  +  L  LL         A+  
Sbjct: 155 LQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVL-ADAC 213

Query: 154 TALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQL 213
            AL  +     +   A+ ++ G    LVE +          A+ A+ ++  +  D   Q+
Sbjct: 214 WALSYLSDGPNDKIQAVIDA-GVCRRLVELLMHNDYKVVSPALRAVGNIV-TGDDIQTQV 271

Query: 214 ILKEGAIPGLLRLTVEGTFEAQERA 238
           IL   A+  LL L        ++ A
Sbjct: 272 ILNCSALQSLLHLLSSPKESIKKEA 296

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 83.8 bits (207), Expect = 3e-18
 Identities = 40/243 (16%), Positives = 83/243 (34%), Gaps = 13/243 (5%)

Query: 31  GPLWQLSKTRNKVKI-ATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKP---AI 86
           G +       N +++         ++E++  ++   +  A      L +  PN P    I
Sbjct: 1   GAMGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVI 60

Query: 87  AASGAAPLLVQIL-HSGSVQGRVDAVTALHYLSTCK-ENSSPILDATAVPPLINLLKDCK 144
           +  G     V+ L    +   + ++   L  +++     +  ++ A AVP  I LL    
Sbjct: 61  STPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSE- 119

Query: 145 KYSKFAEKA-TALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLC 203
            +    E+A  AL  I   S   R  + +    +  L++     + ++        LS  
Sbjct: 120 -FEDVQEQAVWALGNIAGDSTMCRDYVLDC-NILPPLLQLFSKQNRLTMTRNAVWALSNL 177

Query: 204 QSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKR---LSSSVLE 260
              +    +       +  L  L      +    A   L  L D P +K    + + V  
Sbjct: 178 CRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCR 237

Query: 261 KIV 263
           ++V
Sbjct: 238 RLV 240

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 64.9 bits (158), Expect = 6e-12
 Identities = 29/150 (19%), Positives = 54/150 (36%), Gaps = 6/150 (4%)

Query: 40  RNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQI 98
                I    A+  L+ LL     ++++ A   I  ++A        +  +   P L+ I
Sbjct: 267 IQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISI 326

Query: 99  LHSGSVQGRVDAVTALHYLSTCK--ENSSPILDATAVPPLINLLKDCKKYSKFAEKA-TA 155
           L +   + R +A  A+   ++    E    +++   + PL +LL      SK  + A   
Sbjct: 327 LQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTV--MDSKIVQVALNG 384

Query: 156 LLEILSSSEEGRIAITNSDGGILTLVETVE 185
           L  IL   E+              L+E   
Sbjct: 385 LENILRLGEQEAKRNGTGINPYCALIEEAY 414

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 96.2 bits (239), Expect = 2e-22
 Identities = 40/205 (19%), Positives = 81/205 (39%), Gaps = 10/205 (4%)

Query: 41  NKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA------APNKPAIAASGAAPL 94
            +  +   GAI PL+ LL   + +         LT + +       P  P  A     P 
Sbjct: 177 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 236

Query: 95  LVQILHSGSVQGRVDAVTALHYLST-CKENSSPILDATAVPPLINLLKDCKKYSKFAEKA 153
           LV++LH    +   D+  A+ YL+    E    ++    VP L+ LL   +         
Sbjct: 237 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIV-TPAL 295

Query: 154 TALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQL 213
            A+  I++ ++E    + ++ G +      + +      + A   + ++  + R    Q 
Sbjct: 296 RAIGNIVTGTDEQTQKVIDA-GALAVFPSLLTNPKTNIQKEATWTMSNIT-AGRQDQIQQ 353

Query: 214 ILKEGAIPGLLRLTVEGTFEAQERA 238
           ++  G +P L+ +  +  F+ Q+ A
Sbjct: 354 VVNHGLVPFLVGVLSKADFKTQKEA 378

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 92.0 bits (228), Expect = 5e-21
 Identities = 44/229 (19%), Positives = 85/229 (37%), Gaps = 8/229 (3%)

Query: 33  LWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP--NKPAIAASG 90
           L    K      I  AG IP  V  L   + +  +  +A  LT  A+       A+   G
Sbjct: 84  LLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGG 143

Query: 91  AAPLLVQILHSGSVQGRVDAVTALHYLST-CKENSSPILDATAVPPLINLLKDCKKYS-- 147
           A P  + +L S        AV AL  ++         ++   A+ PL+ LL      +  
Sbjct: 144 AIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLA 203

Query: 148 -KFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSC 206
             +    T  L  L  ++     +   +  + TLV  +          +  A+  L    
Sbjct: 204 CGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP 263

Query: 207 RDKYRQLILKEGAIPGLLRLTVEGTFEAQERA-RTLLDLLRDTPQEKRL 254
            ++  ++++K+G +P L++L           A R + +++  T ++ + 
Sbjct: 264 NER-IEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQK 311

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 79.3 bits (195), Expect = 1e-16
 Identities = 33/210 (15%), Positives = 75/210 (35%), Gaps = 8/210 (3%)

Query: 41  NKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQIL 99
               +   G +P LV+LL      +   A  AI  +          +  +GA  +   +L
Sbjct: 266 RIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 325

Query: 100 HSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLE 158
            +     + +A   +  ++   ++    +++   VP L+ +L      ++  E A A+  
Sbjct: 326 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQ-KEAAWAITN 384

Query: 159 ILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCR-----DKYRQL 213
             S     +I      G I  L+  +        Q  + A+ ++ Q+       +K   +
Sbjct: 385 YTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIM 444

Query: 214 ILKEGAIPGLLRLTVEGTFEAQERARTLLD 243
           I + G +  +  L         + +  L++
Sbjct: 445 IEECGGLDKIEALQRHENESVYKASLNLIE 474

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 78.9 bits (194), Expect = 2e-16
 Identities = 47/235 (20%), Positives = 87/235 (37%), Gaps = 15/235 (6%)

Query: 41  NKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKP--AIAASGAAPLLVQI 98
              +     ++  +V+ +   N   +  A  A   L +     P   I  +G  P  V  
Sbjct: 49  GSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSF 108

Query: 99  L-HSGSVQGRVDAVTALHYLSTCK-ENSSPILDATAVPPLINLLKDCKKYSKFAEKA-TA 155
           L  +     + ++  AL  +++   E +  ++D  A+P  I+LL     ++  +E+A  A
Sbjct: 109 LGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL--ASPHAHISEQAVWA 166

Query: 156 LLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVG--ALLSLCQSCRDK--YR 211
           L  I       R  +    G I  L+  +    L +           +L   CR+K    
Sbjct: 167 LGNIAGDGSAFRDLVIKH-GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAP 225

Query: 212 QLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKR---LSSSVLEKIV 263
            L   E  +P L+RL      E    +   +  L D P E+    +   V+ ++V
Sbjct: 226 PLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLV 280

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 68.5 bits (167), Expect = 5e-13
 Identities = 32/164 (19%), Positives = 63/164 (38%), Gaps = 4/164 (2%)

Query: 77  SAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSP--ILDATAVP 134
           + A         + +   +V+ ++S +++ ++ A  A   L + ++      I+ A  +P
Sbjct: 44  AMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIP 103

Query: 135 PLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQH 194
             ++ L          E A AL  I S + E   A+ +    I   +  +       ++ 
Sbjct: 104 KFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGG-AIPAFISLLASPHAHISEQ 162

Query: 195 AVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERA 238
           AV AL ++       +R L++K GAI  LL L            
Sbjct: 163 AVWALGNIAGDG-SAFRDLVIKHGAIDPLLALLAVPDLSTLACG 205

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 57.3 bits (138), Expect = 2e-09
 Identities = 26/129 (20%), Positives = 51/129 (39%), Gaps = 6/129 (4%)

Query: 40  RNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQI 98
               K+  AGA+     LL      +++ A   +  ++A        +   G  P LV +
Sbjct: 307 EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGV 366

Query: 99  LHSGSVQGRVDAVTALHYLSTC--KENSSPILDATAVPPLINLLKDCKKYSKFAEKA-TA 155
           L     + + +A  A+   ++    E    ++    + PL+NLL    K +K  +    A
Sbjct: 367 LSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA--KDTKIIQVILDA 424

Query: 156 LLEILSSSE 164
           +  I  ++E
Sbjct: 425 ISNIFQAAE 433

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 45.8 bits (108), Expect = 1e-05
 Identities = 22/146 (15%), Positives = 49/146 (33%), Gaps = 4/146 (2%)

Query: 121 KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTL 180
              S+      +V  ++  +      S+  +   A  ++LS  ++  I      G I   
Sbjct: 47  DIGSNQGTVNWSVEDIVKGINSNNLESQL-QATQAARKLLSREKQPPIDNIIRAGLIPKF 105

Query: 181 VETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERA-R 239
           V  +        Q      L+   S   +  + ++  GAIP  + L         E+A  
Sbjct: 106 VSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVW 165

Query: 240 TLLDLLRDTPQEKR--LSSSVLEKIV 263
            L ++  D    +   +    ++ ++
Sbjct: 166 ALGNIAGDGSAFRDLVIKHGAIDPLL 191

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 91.6 bits (227), Expect = 9e-21
 Identities = 36/216 (16%), Positives = 79/216 (36%), Gaps = 6/216 (2%)

Query: 40  RNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQI 98
                +  A A+P  ++LL   +  ++E A  A+  ++  +   +  +    A   ++ +
Sbjct: 164 AQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGL 223

Query: 99  LHSGSVQGRVDAVTALHYLSTCKENSSPI-LDATAVPPLINLLKDCKKYSKFAEKATALL 157
            +S        A   L  L   K+      + + A+P L  L+      ++    A   +
Sbjct: 224 FNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYS--MDTETLVDACWAI 281

Query: 158 EILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKE 217
             LS   +  I           LVE +   S +    A+ A+ ++     D   Q+++  
Sbjct: 282 SYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGN-DLQTQVVINA 340

Query: 218 GAIPGLLRLTVEGTFEAQERA-RTLLDLLRDTPQEK 252
           G +P L  L        ++ A  T+ ++     ++ 
Sbjct: 341 GVLPALRLLLSSPKENIKKEACWTISNITAGNTEQI 376

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 90.5 bits (224), Expect = 2e-20
 Identities = 35/204 (17%), Positives = 75/204 (36%), Gaps = 5/204 (2%)

Query: 41  NKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSA-AAPNKPAIAASGAAPLLVQIL 99
            +  +    A+ P++ L      +L   A   +  L     P       S A P L +++
Sbjct: 207 YRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 266

Query: 100 HSGSVQGRVDAVTALHYLS-TCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLE 158
           +S   +  VDA  A+ YLS   +E    ++D      L+ LL      +     A   + 
Sbjct: 267 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES--TLVQTPALRAVG 324

Query: 159 ILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEG 218
            + +  + +  +  + G +  L   +        + A    +S   +   +  Q ++   
Sbjct: 325 NIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWT-ISNITAGNTEQIQAVIDAN 383

Query: 219 AIPGLLRLTVEGTFEAQERARTLL 242
            IP L++L     ++ ++ A   +
Sbjct: 384 LIPPLVKLLEVAEYKTKKEACWAI 407

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 83.1 bits (205), Expect = 7e-18
 Identities = 41/231 (17%), Positives = 83/231 (35%), Gaps = 12/231 (5%)

Query: 41  NKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKP--AIAASGAAPLLVQI 98
            +        +P + + L   +   +  A      + +     P   +  +G  P LV+ 
Sbjct: 79  QQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF 138

Query: 99  LHSGS-VQGRVDAVTALHYLSTCK-ENSSPILDATAVPPLINLLKDCKKYSKFAEKAT-A 155
           +        +++A  AL  +++     +  ++DA AVP  I LL       +  E+A  A
Sbjct: 139 MRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY--TGSVEVKEQAIWA 196

Query: 156 LLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLIL 215
           L  +   S + R  +      +  ++           + A   L +LC+  +       +
Sbjct: 197 LGNVAGDSTDYRDYVLQC-NAMEPILGLFNSNKPSLIRTATWTLSNLCRG-KKPQPDWSV 254

Query: 216 KEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKR---LSSSVLEKIV 263
              A+P L +L      E    A   +  L D PQE     +   + +++V
Sbjct: 255 VSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLV 305

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 81.6 bits (201), Expect = 2e-17
 Identities = 44/225 (19%), Positives = 92/225 (40%), Gaps = 9/225 (4%)

Query: 36  LSKTRN--KVKIATAGAIPPLVELLK-FQNGTLRELAAAAILTLSAAAP-NKPAIAASGA 91
           LS+        +  AG +P LVE ++  Q   L+  AA A+  +++        +  + A
Sbjct: 115 LSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADA 174

Query: 92  APLLVQILHSGSVQGRVDAVTALHYLST-CKENSSPILDATAVPPLINLLKDCKKYSKFA 150
            PL +Q+L++GSV+ +  A+ AL  ++    +    +L   A+ P++ L    K      
Sbjct: 175 VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNK--PSLI 232

Query: 151 EKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKY 210
             AT  L  L   ++ +   +     + TL + +      +   A  A+  L    ++  
Sbjct: 233 RTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEA- 291

Query: 211 RQLILKEGAIPGLLRLTVEGTFEAQERA-RTLLDLLRDTPQEKRL 254
            Q ++       L+ L    +   Q  A R + +++     + ++
Sbjct: 292 IQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQV 336

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 71.2 bits (174), Expect = 5e-14
 Identities = 38/216 (17%), Positives = 76/216 (35%), Gaps = 13/216 (6%)

Query: 41  NKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQIL 99
               +        LVELL  ++  ++  A  A+  +          +  +G  P L  +L
Sbjct: 291 AIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLL 350

Query: 100 HSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCK-KYSKFAEKATALL 157
            S     + +A   +  ++    E    ++DA  +PPL+ LL+  + K  K A  A +  
Sbjct: 351 SSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNA 410

Query: 158 EILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQS----------CR 207
                     I    S G I  L + +E       +  + AL ++ +             
Sbjct: 411 SSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNI 470

Query: 208 DKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLD 243
           ++    I K G +  +         +  E+A  +++
Sbjct: 471 NENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIE 506

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 69.3 bits (169), Expect = 2e-13
 Identities = 35/181 (19%), Positives = 71/181 (39%), Gaps = 5/181 (2%)

Query: 77  SAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENS--SPILDATAVP 134
           S +A  +         P + Q L+S  +Q ++ A      + + +       ++ A  VP
Sbjct: 74  SVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVP 133

Query: 135 PLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQH 194
            L+  +++ +      E A AL  I S +      + ++   +   ++ +  GS+   + 
Sbjct: 134 RLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDA-DAVPLFIQLLYTGSVEVKEQ 192

Query: 195 AVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERA-RTLLDLLRDTPQEKR 253
           A+ AL ++     D YR  +L+  A+  +L L           A  TL +L R    +  
Sbjct: 193 AIWALGNVAGDSTD-YRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPD 251

Query: 254 L 254
            
Sbjct: 252 W 252

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 91.8 bits (227), Expect = 9e-21
 Identities = 38/203 (18%), Positives = 69/203 (33%), Gaps = 5/203 (2%)

Query: 39  TRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQI 98
            +    +A  G    L  L K ++   +EL A  +  +      +  +   G    L+++
Sbjct: 485 NKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRM 544

Query: 99  LHSGSVQGRVDAVTALHYLSTCKENS---SPILDATAVPPLINLLKDCKKYSKFAEKATA 155
              G+ +G+  A  AL  +          S       + PL+NLL+      +  E   A
Sbjct: 545 ALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMA 604

Query: 156 LLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLIL 215
           L  + S +E  R  I     G+  +   + +  L  T+ A   L +L     D  +    
Sbjct: 605 LTNLASMNESVRQRIIKE-QGVSKIEYYLMEDHLYLTRAAAQCLCNLV-MSEDVIKMFEG 662

Query: 216 KEGAIPGLLRLTVEGTFEAQERA 238
               +  L  L  +   E     
Sbjct: 663 NNDRVKFLALLCEDEDEETATAC 685

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 73.7 bits (180), Expect = 9e-15
 Identities = 48/272 (17%), Positives = 87/272 (31%), Gaps = 44/272 (16%)

Query: 33  LWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAI--AASG 90
           L   S  ++K K      +  L  L   +N  +R  A   +  L +      AI     G
Sbjct: 314 LIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDG 373

Query: 91  AAPLLVQIL------HSGSVQGRVDAVTALHYLSTCKENSSPIL-DATAVPPLINLLKDC 143
           AA  L +               R  A   L YL+   E    ++ D  ++  L++L +  
Sbjct: 374 AALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGG 433

Query: 144 K-------------------------------KYSKFAEKATALLEILSSSEEGRIAITN 172
                                           K++K        L+ +    +    + N
Sbjct: 434 NQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLAN 493

Query: 173 SDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTF 232
             G    L    +  S  S +     L ++C     + R  +++EG +  LLR+ +EGT 
Sbjct: 494 E-GITTALCALAKTESHNSQELIARVLNAVCGL--KELRGKVVQEGGVKALLRMALEGTE 550

Query: 233 EAQERA-RTLLDLLRDTPQEKRLSSSVLEKIV 263
           + +  A + L  +      E   S      ++
Sbjct: 551 KGKRHATQALARIGITINPEVSFSGQRSLDVI 582

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 68.7 bits (167), Expect = 5e-13
 Identities = 36/195 (18%), Positives = 69/195 (35%), Gaps = 6/195 (3%)

Query: 50  AIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVD 109
            +P ++EL KF    + E     +  +         +A  G    L  +  + S   +  
Sbjct: 457 MLPEMIELAKFAKQHIPE--EHELDDVDFINKRITVLANEGITTALCALAKTESHNSQEL 514

Query: 110 AVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE-EGRI 168
               L+ +   KE    ++    V  L+ +  +  +  K      AL  I  +   E   
Sbjct: 515 IARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGK-RHATQALARIGITINPEVSF 573

Query: 169 AITNSDGGILTLVETVE-DGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLT 227
           +   S   I  L+  ++ D + +    ++ AL +L  S  +  RQ I+KE  +  +    
Sbjct: 574 SGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLA-SMNESVRQRIIKEQGVSKIEYYL 632

Query: 228 VEGTFEAQERARTLL 242
           +E        A   L
Sbjct: 633 MEDHLYLTRAAAQCL 647

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 89.1 bits (220), Expect = 5e-20
 Identities = 43/213 (20%), Positives = 73/213 (34%), Gaps = 19/213 (8%)

Query: 33  LWQLSK--TRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAAS 89
           +          K ++   G I  LV+LL+  N  +++ AA A+  L   +  NK      
Sbjct: 26  IQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQ 85

Query: 90  GAAPLLVQIL-HSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLL-------- 140
                 V +L  +G+ + +      L  LS+  E    ++ A A+P L + +        
Sbjct: 86  NGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELI-ADALPVLADRVIIPFSGWC 144

Query: 141 ------KDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQH 194
                        +    AT  L  LSS++ GR  + N  G I +L+  V++    S   
Sbjct: 145 DGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCD 204

Query: 195 AVGALLSLCQSCRDKYRQLILKEGAIPGLLRLT 227
                  +C      YR           L    
Sbjct: 205 DKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA 237

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 81.4 bits (200), Expect = 2e-17
 Identities = 36/213 (16%), Positives = 72/213 (33%), Gaps = 22/213 (10%)

Query: 51  IPPLVELLKFQNGTLRELAAAAILTLSAA-APNKPAIAASGAAPLLVQILHSGSVQGRVD 109
           IP  V+ L  Q+   + + A  I          K  +   G    LV +L S +   +  
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63

Query: 110 AVTALHYLST-CKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRI 168
           A  AL  L      N         +   ++LL+     ++  ++ T LL  LSS++E + 
Sbjct: 64  AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGN-AEIQKQLTGLLWNLSSTDELKE 122

Query: 169 AITNSDGGILTLVETVEDGSLVSTQ----------------HAVGALLSLCQSCRDKYRQ 212
            +      +  L + V                         +A G L +L  +   + + 
Sbjct: 123 ELI--ADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGR-QT 179

Query: 213 LILKEGAIPGLLRLTVEGTFEAQERARTLLDLL 245
           +    G I  L+         ++   +++ + +
Sbjct: 180 MRNYSGLIDSLMAYVQNCVAASRCDDKSVENCM 212

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 65.6 bits (159), Expect = 4e-12
 Identities = 24/149 (16%), Positives = 50/149 (33%), Gaps = 7/149 (4%)

Query: 28  NLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIA 87
           NL      +S   +++       +P +  LL+  N  +    A+ +  +S        + 
Sbjct: 310 NLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMG 369

Query: 88  ASGAAPLLVQILHSG-----SVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLK 141
                 +   +         S      A   +  L     + +     ++ +  +INL +
Sbjct: 370 NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCR 429

Query: 142 DCKKYSKFAEKATALLEILSSSEEGRIAI 170
                 K AE A  LL  + SS+E +  +
Sbjct: 430 S-SASPKAAEAARLLLSDMWSSKELQGVL 457

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 51.4 bits (122), Expect = 2e-07
 Identities = 51/293 (17%), Positives = 95/293 (32%), Gaps = 36/293 (12%)

Query: 28  NLMGPLWQLSK-TRNKVKIAT-AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPA 85
           N  G L  LS     +  +   +G I  L+  ++      R    +    +         
Sbjct: 162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYR 221

Query: 86  IAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSS----------------PILD 129
           + A           ++ +      +       S    N++                 +  
Sbjct: 222 LDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYH 281

Query: 130 ATAVPPLINLLKDCKKYSKFAEKATALLEILSS----SEEGRIAITNSDGGILTLVETVE 185
           + A+   +NL+   KK +     A AL  + +S    S      I   + G+  +   ++
Sbjct: 282 SDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQ 341

Query: 186 DGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGT------FEAQERA- 238
            G+    +     L ++    R      ++     P + RL    T       +    A 
Sbjct: 342 SGNSDVVRSGASLLSNM---SRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSAC 398

Query: 239 RTLLDLLRDTPQEKR--LSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQ 289
            T+ +L+   PQ  +   SSS+L  I+     R   + KAAE A+ LL DM  
Sbjct: 399 YTVRNLMASQPQLAKQYFSSSMLNNIIN--LCRSSASPKAAEAARLLLSDMWS 449

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 41.7 bits (97), Expect = 2e-04
 Identities = 27/157 (17%), Positives = 51/157 (32%), Gaps = 5/157 (3%)

Query: 133 VPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVST 192
           +P  +  L    +  K+       ++     +E         GGI  LV+ +   +    
Sbjct: 4   IPKAVQYLSS--QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQ 61

Query: 193 QHAVGALLSLCQSCRDKYRQLILKEGAIPGLLR-LTVEGTFEAQERA-RTLLDLLRDTPQ 250
           Q A GAL +L        +    ++  I   +  L   G  E Q++    L +L      
Sbjct: 62  QAAAGALRNLVFRS-TTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL 120

Query: 251 EKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDM 287
           ++ L +  L  +   +     G         R + D 
Sbjct: 121 KEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDP 157

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 82.7 bits (204), Expect = 8e-19
 Identities = 36/195 (18%), Positives = 71/195 (36%), Gaps = 24/195 (12%)

Query: 33  LWQLSKT--RNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAAS 89
           +          + ++     I  L++LLK QN  ++     A+  L      NK  +A  
Sbjct: 34  IQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAEL 93

Query: 90  GAAPLLVQIL-HSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSK 148
              P L+Q+L  +  ++ +      L  LS+  +  + ++    +    N++     + +
Sbjct: 94  NGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPE 153

Query: 149 --------------FAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSL----- 189
                         F      L  + S+  +GR A+   DG I +LV  V          
Sbjct: 154 GDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPD 213

Query: 190 -VSTQHAVGALLSLC 203
             +T++ V  L +L 
Sbjct: 214 DKATENCVCILHNLS 228

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 78.5 bits (193), Expect = 2e-17
 Identities = 33/199 (16%), Positives = 70/199 (35%), Gaps = 23/199 (11%)

Query: 48  AGAIPPLVELLKFQNG--TLRELAAAAILTLSAA-APNKPAIAASGAAPLLVQILHSGSV 104
              +   V +L+  +   +    AA  I       +  +  +        L+Q+L   + 
Sbjct: 7   EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNE 66

Query: 105 QGRVDAVTALHYLST-CKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS 163
             +     AL  L     +N   + +   VP L+ +LK  +   +  ++ T LL  LSS+
Sbjct: 67  DVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRD-LETKKQITGLLWNLSSN 125

Query: 164 EEGRIAITNSDGGILTLVETVEDGSLVSTQ----------------HAVGALLSLCQSCR 207
           ++ +  +      +LTL E +        +                +  G L ++  +  
Sbjct: 126 DKLKNLM--ITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGA 183

Query: 208 DKYRQLILKEGAIPGLLRL 226
           D  + +   +G I  L+  
Sbjct: 184 DGRKAMRRCDGLIDSLVHY 202

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 49.9 bits (119), Expect = 2e-07
 Identities = 22/160 (13%), Positives = 56/160 (35%), Gaps = 3/160 (1%)

Query: 130 ATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSL 189
              +   +++L+           A   ++     +       N   GIL L++ ++  + 
Sbjct: 7   EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNE 66

Query: 190 VSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGT-FEAQERA-RTLLDLLRD 247
              +   GAL +L     +  +  + +   +P LL++  +    E +++    L +L  +
Sbjct: 67  DVQRAVCGALRNLVFED-NDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN 125

Query: 248 TPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDM 287
              +  + +  L  +  +I     G  +        L D 
Sbjct: 126 DKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDF 165

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 40.7 bits (95), Expect = 3e-04
 Identities = 20/117 (17%), Positives = 34/117 (29%), Gaps = 24/117 (20%)

Query: 26  RLNLMGPLWQLSKTRNKVKIATAGAIPPLVELL----------------KFQNGTLRELA 69
           +  + G LW LS       +    A+  L E +                   +  +    
Sbjct: 112 KKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNV 171

Query: 70  AAAILTLSAAAP-NKPAI-AASGAAPLLVQILHSGSVQGRVD------AVTALHYLS 118
              +  +S+A    + A+    G    LV  +       + D       V  LH LS
Sbjct: 172 TGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLS 228

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 85.8 bits (211), Expect = 9e-19
 Identities = 41/220 (18%), Positives = 76/220 (34%), Gaps = 20/220 (9%)

Query: 26  RLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA-APNKP 84
               +  L  L K            +P ++ +L F+   ++  AAA +  L       K 
Sbjct: 25  ERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKT 84

Query: 85  AIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCK--ENSSPILDATAVPPLINLLKD 142
            +      P+LV +L     +  + A  AL  +S  +  +N   I +   VP L+ LL+ 
Sbjct: 85  DVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRK 144

Query: 143 CKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTL----------------VETVED 186
            +      E  T  L  LSS +  ++ I +     LT                  +    
Sbjct: 145 ARD-MDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHI 203

Query: 187 GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRL 226
                  +  G L ++     +  R+L   +G +  L+ +
Sbjct: 204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFI 243

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 81.5 bits (200), Expect = 2e-17
 Identities = 47/239 (19%), Positives = 76/239 (31%), Gaps = 33/239 (13%)

Query: 40  RNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA--PNKPAIAASGAAPLLVQ 97
           + K  +     IP LV LL      +   A  A+  +S      NK AI      P LV+
Sbjct: 81  KVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVR 140

Query: 98  IL-HSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLL---------------- 140
           +L  +  +         L  LS+       I+D  A+  L + +                
Sbjct: 141 LLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDH-ALHALTDEVIIPHSGWEREPNEDCK 199

Query: 141 -KDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETV------EDGSLVSTQ 193
            +  +  S     A  L  + S   E R  +   DG +  L+  V      +D      +
Sbjct: 200 PRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVE 259

Query: 194 HAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQER------ARTLLDLLR 246
           + V  L +L      +  Q    + A P +   T        E        R  + LL+
Sbjct: 260 NCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLK 318

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 78.1 bits (191), Expect = 3e-16
 Identities = 25/139 (17%), Positives = 55/139 (39%), Gaps = 10/139 (7%)

Query: 41  NKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILH 100
            +  +    A+  + +LL  ++  + + A+ A+  L+  A NK  I    A P LV+ L 
Sbjct: 347 IRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-GKHAIPNLVKNLP 405

Query: 101 SG--------SVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAE 151
            G        S    +  +  ++ +     E +  + +   +  L+ + K   +  K   
Sbjct: 406 GGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVR 465

Query: 152 KATALLEILSSSEEGRIAI 170
            A  +L+ +   +E R  +
Sbjct: 466 AAALVLQTIWGYKELRKPL 484

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 64.6 bits (156), Expect = 1e-11
 Identities = 36/193 (18%), Positives = 68/193 (35%), Gaps = 19/193 (9%)

Query: 41  NKVKIATAGAIPPLVELLKF-QNGTLRELAAAAILTLSAAAPNKP-----AIAASGAAPL 94
               +     +   + LLK  +   + E +A AI  L A           A+    A   
Sbjct: 300 GYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSA 359

Query: 95  LVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKF----- 149
           +  +L +   +    A  AL  L+    N   I    A+P L+  L   ++ S +     
Sbjct: 360 IADLLTNEHERVVKAASGALRNLAVDARNKELI-GKHAIPNLVKNLPGGQQNSSWNFSED 418

Query: 150 --AEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVS--TQHAVGALLSLCQS 205
                   + E+++ + E    +  +  GI  LV   + G+      + A   L ++   
Sbjct: 419 TVISILNTINEVIAENLEAAKKLRET-QGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY 477

Query: 206 CRDKYRQLILKEG 218
              + R+ + KEG
Sbjct: 478 --KELRKPLEKEG 488

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 50.0 bits (118), Expect = 6e-07
 Identities = 27/194 (13%), Positives = 59/194 (30%), Gaps = 5/194 (2%)

Query: 122 ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLV 181
               P      +P +I +L       K    A  L  +   +++ +  +     GI  LV
Sbjct: 39  GPPPPNWRQPELPEVIAMLGFRLDAVKSNA-AAYLQHLCYRNDKVKTDVRKL-KGIPVLV 96

Query: 182 ETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTF-EAQERA-R 239
             ++         A GAL ++        +  I     +P L+RL  +    +  E    
Sbjct: 97  GLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITG 156

Query: 240 TLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELSMTRI 299
           TL +L      +  +    L  +  ++     G ++      +      +  +  +    
Sbjct: 157 TLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLT-NTAGC 215

Query: 300 QQRAASSAPSKIPS 313
            +  +S        
Sbjct: 216 LRNVSSERSEARRK 229

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 45.3 bits (106), Expect = 2e-05
 Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 1/95 (1%)

Query: 151 EKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKY 210
            +  +L  + S  + G          +  ++  +         +A   L  LC    DK 
Sbjct: 24  HERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLC-YRNDKV 82

Query: 211 RQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLL 245
           +  + K   IP L+ L      E    A   L  +
Sbjct: 83  KTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNI 117

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 76.6 bits (188), Expect = 3e-16
 Identities = 49/221 (22%), Positives = 72/221 (32%), Gaps = 12/221 (5%)

Query: 41  NKVKIATAGAIPPLV-ELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQI 98
           N         +  LV   L+     LR  AA  I T S      +  +   GA   L+++
Sbjct: 73  NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132

Query: 99  L-HSGSVQGRVDAVTALHYLST-CKENSSPILDATAVPPLINLLKDCKKYSKFAEKATAL 156
           L        RV A+ A+  L    +      L       L+  ++   +  K   K+  L
Sbjct: 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ--QVQKLKVKSAFL 190

Query: 157 LEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK 216
           L+ L            S G +  LV  V        +H +GAL SL        R+    
Sbjct: 191 LQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREP 250

Query: 217 EGAIPGLLRLTV------EGTFEAQERARTLLDLLRDTPQE 251
           E  +  LLR         E   E  E    LL     +P +
Sbjct: 251 ELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFSSPAD 291

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 64.3 bits (156), Expect = 5e-12
 Identities = 23/149 (15%), Positives = 52/149 (34%), Gaps = 10/149 (6%)

Query: 40  RNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA----PNKPAIAASGAAPLL 95
             + ++   GA+  L+ LL         +   A+  +S                    +L
Sbjct: 115 AIQEQVLGLGALRKLLRLLDRDACD--TVRVKALFAISCLVREQEAGLLQFLRLDGFSVL 172

Query: 96  VQILHSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKA- 153
           ++ +     + +V +   L  L     E+   +     V  L+ L++   ++S F E   
Sbjct: 173 MRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRT--EHSPFHEHVL 230

Query: 154 TALLEILSSSEEGRIAITNSDGGILTLVE 182
            AL  +++   +G       + G+  L+ 
Sbjct: 231 GALCSLVTDFPQGVRECREPELGLEELLR 259

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 54.3 bits (130), Expect = 1e-08
 Identities = 21/169 (12%), Positives = 49/169 (28%), Gaps = 1/169 (0%)

Query: 85  AIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCK 144
            + +    P   +   +   Q R  A+  L  L    +N++     + +  L+    +  
Sbjct: 35  RVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAG 94

Query: 145 KYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQ 204
                   A  +     +    +  +         L     D        A+ A+  L +
Sbjct: 95  AAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVR 154

Query: 205 SCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKR 253
              +      L+      L+R   +   + + ++  LL  L     E +
Sbjct: 155 EQ-EAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHK 202

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 53.5 bits (128), Expect = 2e-08
 Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 7/136 (5%)

Query: 37  SKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLL 95
            +    ++         L+  ++ Q   L+  +A  +  L    P +K  + + G    L
Sbjct: 155 EQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQL 214

Query: 96  VQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVP------PLINLLKDCKKYSKF 149
           V ++ +         + AL  L T             +           LL+  ++Y + 
Sbjct: 215 VALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEE 274

Query: 150 AEKATALLEILSSSEE 165
            E    LL+   SS  
Sbjct: 275 LEFCEKLLQTCFSSPA 290

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 61.0 bits (147), Expect = 2e-10
 Identities = 23/141 (16%), Positives = 48/141 (34%), Gaps = 7/141 (4%)

Query: 38  KTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQ 97
              N+  I     I  L   +   +   ++     I  ++ +    P +A  GA  ++++
Sbjct: 446 LLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILE 505

Query: 98  ILHSGSVQGRVDAVTALHYLSTCKENSSPIL------DATAVPPLINLLKDCKKYSKFAE 151
            L +    G    +     L+     ++P L         A+P L  LL           
Sbjct: 506 YLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPL 565

Query: 152 KATALLEILSSSEEGRIAITN 172
                +++  +  E  +A+TN
Sbjct: 566 HNDEQIKLTDNY-EALLALTN 585

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 7e-08
 Identities = 52/370 (14%), Positives = 107/370 (28%), Gaps = 99/370 (26%)

Query: 2   LFFCWES--PRGVEVFMET-----Y--------FEGYARRLNLMGPLWQLSKTRNKVKIA 46
           LF+   S     V+ F+E      Y         E     +     + Q  +  N  ++ 
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126

Query: 47  TAGAIPPLVELLKFQNGTLRELAAAAILTLSA-AAPNKPAIAASGAAPLLVQILHSGSV- 104
               +  L   LK +   L EL  A  + +       K  +A        VQ      + 
Sbjct: 127 AKYNVSRLQPYLKLRQA-LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185

Query: 105 ----------QGRVDAVTALHYLSTCKENSSPILDATAVPPL-INLLKDCKKYSKFAEK- 152
                     +  ++ +  L Y       S    D ++   L I+ ++   +      K 
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS--DHSSNIKLRIHSIQAELRR-LLKSKP 242

Query: 153 -ATALLEIL---SSSE-------EGRIAITNSDGGILTLV-------ETVEDGSLVSTQH 194
               LL +L    +++         +I +T     +   +        +++  S+  T  
Sbjct: 243 YENCLL-VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301

Query: 195 AVGALLSLCQSCR------------------------------DKYRQLILKEGAIPGLL 224
            V +LL     CR                              D ++ +   +      L
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK------L 355

Query: 225 RLTVEGTFEAQERA--RTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKR 282
              +E +    E A  R + D L   P    + + +L  +++         D        
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS-LIW--------FDVIKSDVMV 406

Query: 283 LLQDMVQRSM 292
           ++  + + S+
Sbjct: 407 VVNKLHKYSL 416

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 3e-04
 Identities = 38/252 (15%), Positives = 74/252 (29%), Gaps = 72/252 (28%)

Query: 39  TRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILT--LSAAAPNKPAIAASGAAPLLV 96
           TR K       A       L   + TL      ++L   L     + P    +   P  +
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN-PRRL 330

Query: 97  QILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLK--DCKK-YSKFA--- 150
            I+       R    T  ++     +  + I++++     +N+L+  + +K + + +   
Sbjct: 331 SII--AESI-RDGLATWDNWKHVNCDKLTTIIESS-----LNVLEPAEYRKMFDRLSVFP 382

Query: 151 EKA---TALLEIL---SSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQ 204
             A   T LL ++       +           ++ +V  +   SLV             Q
Sbjct: 383 PSAHIPTILLSLIWFDVIKSD-----------VMVVVNKLHKYSLV-----------EKQ 420

Query: 205 SCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVY 264
                          IP +                  L+L      E  L  S+++   Y
Sbjct: 421 PKESTIS--------IPSIY-----------------LELKVKLENEYALHRSIVDH--Y 453

Query: 265 DIAARVDGADKA 276
           +I    D  D  
Sbjct: 454 NIPKTFDSDDLI 465

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651

 Score = 49.7 bits (118), Expect = 7e-07
 Identities = 39/230 (16%), Positives = 80/230 (34%), Gaps = 33/230 (14%)

Query: 48  AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGR 107
           A  I  L + +   + TL +    A+  L + +          A   L+ +L +      
Sbjct: 20  AETIQKLCDRV--ASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSE 77

Query: 108 V--DAVTALHYLSTCKENSSP-------------------ILDATAVPPLINLLKDCKKY 146
           +   A+  L+ + +  E                       I     V  L++LL++   +
Sbjct: 78  IIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFH 137

Query: 147 SKFAEKATALLEILSSSEEGRI--AITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQ 204
            ++      LL  L      ++   I  S  G+  L++ + D   V     V  L +L +
Sbjct: 138 VRWP--GVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTR 195

Query: 205 SCRDKYRQLILKEGAIPGLLRL-----TVEGTFEAQERARTLLDLLRDTP 249
           S     ++++  E A   LL +       +G    ++    L +LL++  
Sbjct: 196 SNGA-IQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNN 244

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 41.1 bits (97), Expect = 5e-05
 Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 21/93 (22%)

Query: 50  AIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVD 109
            + P    +  +N  +R   + A+  +              A   L++ L +   + R  
Sbjct: 13  GLVPRGSHMADENKWVRRDVSTALSRMGDE-----------AFEPLLESLSNEDWRIRGA 61

Query: 110 AVTALHYLSTCKENSSPILDATAVPPLINLLKD 142
           A   +              D  AV PLI LL+D
Sbjct: 62  AAWII----------GNFQDERAVEPLIKLLED 84

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 42.0 bits (99), Expect = 7e-05
 Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 20/99 (20%)

Query: 44  KIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGS 103
           +I    A+ PL++ LK ++G +R+ AA A+  +              A   L++ L    
Sbjct: 76  QIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDER----------AVEPLIKALKDED 125

Query: 104 VQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKD 142
              R+ A  AL  +           D  AV PLI  LKD
Sbjct: 126 WFVRIAAAFALGEIG----------DERAVEPLIKALKD 154

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 29/99 (29%), Positives = 38/99 (38%), Gaps = 20/99 (20%)

Query: 44  KIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGS 103
           KI    A+ PL++ LK ++  +R  AA A+            I    A   L++ L    
Sbjct: 45  KIGDERAVEPLIKALKDEDAWVRRAAADALG----------QIGDERAVEPLIKALKDED 94

Query: 104 VQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKD 142
              R  A  AL            I D  AV PLI  LKD
Sbjct: 95  GWVRQSAAVAL----------GQIGDERAVEPLIKALKD 123

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 38.9 bits (91), Expect = 9e-04
 Identities = 22/98 (22%), Positives = 33/98 (33%), Gaps = 20/98 (20%)

Query: 45  IATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSV 104
            A    +   ++ L+  +  +R  AA A+  +              A   L++ L     
Sbjct: 15  RADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDER----------AVEPLIKALKDEDA 64

Query: 105 QGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKD 142
             R  A  AL  +           D  AV PLI  LKD
Sbjct: 65  WVRRAAADALGQIG----------DERAVEPLIKALKD 92

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 20/99 (20%)

Query: 44  KIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGS 103
           +I    A+ PL++ LK ++G +R+ AA A+  +              A   L++ L    
Sbjct: 71  QIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDER----------AVEPLIKALKDED 120

Query: 104 VQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKD 142
              R+ A  AL  +           D  AV PLI  LKD
Sbjct: 121 WFVRIAAAFALGEIG----------DERAVEPLIKALKD 149

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 29/99 (29%), Positives = 38/99 (38%), Gaps = 20/99 (20%)

Query: 44  KIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGS 103
           KI    A+ PL++ LK ++  +R  AA A+            I    A   L++ L    
Sbjct: 40  KIGDERAVEPLIKALKDEDAWVRRAAADALG----------QIGDERAVEPLIKALKDED 89

Query: 104 VQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKD 142
              R  A  AL            I D  AV PLI  LKD
Sbjct: 90  GWVRQSAAVAL----------GQIGDERAVEPLIKALKD 118

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	314
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.97
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.97
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.97
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.97
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.97
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.97
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.97
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.97
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.97
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.96
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.96
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.96
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.96
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.96
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.95
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.95
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.95
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.95
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.95
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.94
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.94
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.94
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.94
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.94
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.94
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.93
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.92
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.92
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.92
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.9
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.88
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.87
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.87
3grl_A	651	General vesicular transport factor P115; vesicle t	99.52
3grl_A	651	General vesicular transport factor P115; vesicle t	99.48
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.46
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.45
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.44
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.42
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.41
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.34
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.33
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.28
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.11
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.11
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.09
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.08
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.07
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.06
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.94
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.93
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.9
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.75
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.71
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.68
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.67
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.65
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.61
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.53
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.47
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.44
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	98.44
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.43
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.42
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.33
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.26
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.26
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	98.22
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.16
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.03
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.01
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.97
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.92
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.84
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	97.75
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	97.72
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	97.69
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	97.64
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	97.5
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	97.04
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	97.04
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	96.96
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	96.86
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	96.72
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	96.72
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	96.36
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	96.28
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	96.08
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	95.96
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	95.83
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	95.52
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	95.37
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	95.27
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	95.25
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	95.19
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	94.85
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	94.12
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	94.0
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	93.95
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	93.87
2x1g_F	971	Cadmus; transport protein, developmental protein,	93.7
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	93.6
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	93.38
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	93.27
2x1g_F	971	Cadmus; transport protein, developmental protein,	93.04
2x19_B	963	Importin-13; nuclear transport, protein transport;	92.96
2x19_B	963	Importin-13; nuclear transport, protein transport;	92.64
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	92.06
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	90.46
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	90.38
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	90.1
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	89.35
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	89.06
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	88.72
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	88.16
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	87.74
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	85.85
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	84.12
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	82.46
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	81.71

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=100.00  E-value=8.4e-36  Score=270.52  Aligned_cols=284  Identities=18%  Similarity=0.135  Sum_probs=231.7

Q ss_pred             CHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcC-----------CCHHHHHHHHHHHHHhccCCC-ChhHHhh
Q 021317           21 EGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKF-----------QNGTLRELAAAAILTLSAAAP-NKPAIAA   88 (314)
Q Consensus        21 ~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~-----------~~~~~~~~a~~~L~~La~~~~-~~~~i~~   88 (314)
                      +...+..|+++|.+++.++++|..+++.|++++|+.+|..           .+++++..|+++|.||+..++ ++..|..
T Consensus        45 ~~~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~  124 (354)
T 3nmw_A           45 VEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS  124 (354)
T ss_dssp             GGGTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4466778999999777789999999999999999999952           246789999999999998765 7777765


Q ss_pred             c-CcHHHHHHHhccCCHHHHHHHHHHHHHhcCC--CCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcC-Ch
Q 021317           89 S-GAAPLLVQILHSGSVQGRVDAVTALHYLSTC--KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSS-SE  164 (314)
Q Consensus        89 ~-g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~-~~  164 (314)
                      . |+||+|+++|+++++++++.|+++|+||+..  +++|..+++.|++++|+++|.... +..+++.++++|+||+. ++
T Consensus       125 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~-~~~~~~~A~~aL~nLs~~~~  203 (354)
T 3nmw_A          125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK-KESTLKSVLSALWNLSAHCT  203 (354)
T ss_dssp             CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTTCH
T ss_pred             cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCC-CHHHHHHHHHHHHHHHccCh
Confidence            4 5599999999999999999999999999974  468999999999999999865432 23788899999999999 67


Q ss_pred             hhhhHHHhccCCHHHHHHHhhcCCH----HHHHHHHHHHHHhhc---cCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHH
Q 021317          165 EGRIAITNSDGGILTLVETVEDGSL----VSTQHAVGALLSLCQ---SCRDKYRQLILKEGAIPGLLRLTVEGTFEAQER  237 (314)
Q Consensus       165 ~~~~~i~~~~g~v~~Lv~ll~~~~~----~~~~~A~~~L~~L~~---~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~  237 (314)
                      +++..++...|+++.|+.+|.++++    .+++.|+++|+||+.   .+ +++++.+.+.|+++.|++++++++..+++.
T Consensus       204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~  282 (354)
T 3nmw_A          204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN-EDHRQILRENNCLQTLLQHLKSHSLTIVSN  282 (354)
T ss_dssp             HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHTTTHHHHHHHHTTCSCHHHHHH
T ss_pred             hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCC-HHHHHHHHHcCCHHHHHHHHcCCChHHHHH
Confidence            8888887568999999999987654    589999999999997   34 378999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCch---hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCC
Q 021317          238 ARTLLDLLRDTPQE---KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELSMTRIQQRAASSAPS  309 (314)
Q Consensus       238 A~~~L~~l~~~~~~---~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~~~~~~~~~~~~~~~~~~  309 (314)
                      |+++|+||+...++   .+.+.|+++.++..|.   +++++.++.|..+|.+|...++++-....+...+.+-||
T Consensus       283 A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~---s~~~~i~~~A~~aL~nL~~~~~~~~~~~~~~~~~~~~~~  354 (354)
T 3nmw_A          283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIH---SKHKMIAMGSAAALRNLMANRPAKYKDANIMSPGSSLPS  354 (354)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTT---CSSHHHHHHHHHHHHHHHTTCCGGGC-------------
T ss_pred             HHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHh---CCCHHHHHHHHHHHHHHHcCCHHHHhhhcccCCcCcCCC
Confidence            99999999954432   4567899998876654   567899999999999999887777666666666666664

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=1.7e-33  Score=262.82  Aligned_cols=263  Identities=18%  Similarity=0.151  Sum_probs=225.2

Q ss_pred             HHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcC-----------CCHHHHHHHHHHHHHhccCCC-ChhHHhh-cCc
Q 021317           25 RRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKF-----------QNGTLRELAAAAILTLSAAAP-NKPAIAA-SGA   91 (314)
Q Consensus        25 ~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~-----------~~~~~~~~a~~~L~~La~~~~-~~~~i~~-~g~   91 (314)
                      +.+|+++|.+.+.++++|..+.+.|++++|+.+|..           .++.++..|+++|.||+..++ ++..+.. .|+
T Consensus       165 ~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~Ga  244 (458)
T 3nmz_A          165 ICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGC  244 (458)
T ss_dssp             THHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCc
Confidence            348999999778889999999999999999999942           246789999999999998765 6667764 456


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHhcCC--CCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcC-Chhhhh
Q 021317           92 APLLVQILHSGSVQGRVDAVTALHYLSTC--KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSS-SEEGRI  168 (314)
Q Consensus        92 l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~-~~~~~~  168 (314)
                      +|+|+++|++++++++..|+++|+||+..  +++|..+++.|++++|+++|.+.. +..+++.++++|+||+. +++++.
T Consensus       245 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~-~~~v~~~A~~aL~nLs~~~~~nk~  323 (458)
T 3nmz_A          245 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK-KESTLKSVLSALWNLSAHCTENKA  323 (458)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCC-SHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCC-CHHHHHHHHHHHHHHccCCHHHHH
Confidence            99999999999999999999999999974  468899999999999999865432 33788999999999999 778888


Q ss_pred             HHHhccCCHHHHHHHhhcCCH----HHHHHHHHHHHHhhc---cCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHH
Q 021317          169 AITNSDGGILTLVETVEDGSL----VSTQHAVGALLSLCQ---SCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTL  241 (314)
Q Consensus       169 ~i~~~~g~v~~Lv~ll~~~~~----~~~~~A~~~L~~L~~---~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~  241 (314)
                      .++...|+++.|+.+|.++++    .+++.|+++|+||+.   .+ +++++.+++.|+++.|++++++++..+++.|+++
T Consensus       324 ~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~-~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~a  402 (458)
T 3nmz_A          324 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN-EDHRQILRENNCLQTLLQHLKSHSLTIVSNACGT  402 (458)
T ss_dssp             HHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHH
T ss_pred             HHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCC-HHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHH
Confidence            887568999999999987654    489999999999997   44 4789999999999999999999999999999999


Q ss_pred             HHHhhcCCch---hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHH
Q 021317          242 LDLLRDTPQE---KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSM  292 (314)
Q Consensus       242 L~~l~~~~~~---~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~  292 (314)
                      |+||+...++   .+.+.|+++.++..|.   .++++.++.|..+|.+|..+++
T Consensus       403 L~nLa~~~~~~~~~i~~~G~I~~Lv~LL~---s~~~~v~~~Aa~AL~nL~~~~p  453 (458)
T 3nmz_A          403 LWNLSARNPKDQEALWDMGAVSMLKNLIH---SKHKMIAMGSAAALRNLMANRP  453 (458)
T ss_dssp             HHHHHSSCHHHHHHHHHHTHHHHHHTTTT---CSSHHHHHHHHHHHHHHHTCCS
T ss_pred             HHHHHcCCHHHHHHHHHCCCHHHHHHHHh---CCCHHHHHHHHHHHHHHHcCCH
Confidence            9999954432   4567889998876654   5678899999999999997654

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=1.5e-31  Score=251.61  Aligned_cols=279  Identities=19%  Similarity=0.210  Sum_probs=232.3

Q ss_pred             eeeccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC-CCChhHHhhcC
Q 021317           13 EVFMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA-APNKPAIAASG   90 (314)
Q Consensus        13 ~v~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~i~~~g   90 (314)
                      .+.+|++++++.|..|+++|. ++..++.++..+++.|++|.|+++|++++++++..|+++|.||+.. ++++..|++.|
T Consensus         7 lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G   86 (457)
T 1xm9_A            7 AVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQN   86 (457)
T ss_dssp             HHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTT
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcC
Confidence            357889999999999999999 6667777888999999999999999999999999999999999986 78999999999


Q ss_pred             cHHHHHHHhc-cCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhh--------ccC------CchHHHHHHHH
Q 021317           91 AAPLLVQILH-SGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLK--------DCK------KYSKFAEKATA  155 (314)
Q Consensus        91 ~l~~Lv~lL~-~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~--------~~~------~~~~~~~~a~~  155 (314)
                      ++|+|+++|. ++++++++.++++|.||+.+++++..+++ |++++|+++|.        ++.      .+..+...|++
T Consensus        87 ~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~  165 (457)
T 1xm9_A           87 GIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATG  165 (457)
T ss_dssp             CHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHH
T ss_pred             CHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHH
Confidence            9999999999 88999999999999999988999999999 99999999993        221      23466779999


Q ss_pred             HHHHhcCChhhhhHHHhcc-CCHHHHHHHhhc------------------------------------------------
Q 021317          156 LLEILSSSEEGRIAITNSD-GGILTLVETVED------------------------------------------------  186 (314)
Q Consensus       156 ~L~~L~~~~~~~~~i~~~~-g~v~~Lv~ll~~------------------------------------------------  186 (314)
                      +|+||+.+++++..+. +. |+++.|+.+|.+                                                
T Consensus       166 aL~nLs~~~~~~~~i~-~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~  244 (457)
T 1xm9_A          166 CLRNLSSADAGRQTMR-NYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEK  244 (457)
T ss_dssp             HHHHHTTSHHHHHHHT-TSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-------
T ss_pred             HHHHHccCHHHHHHHH-HcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccc
Confidence            9999999988888888 66 999999988763                                                


Q ss_pred             ---------------------------------------------------CCHHHHHHHHHHHHHhhccCcH---HH-H
Q 021317          187 ---------------------------------------------------GSLVSTQHAVGALLSLCQSCRD---KY-R  211 (314)
Q Consensus       187 ---------------------------------------------------~~~~~~~~A~~~L~~L~~~~~~---~~-~  211 (314)
                                                                         .++.+++.|+++|+|||..+.+   .. +
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~  324 (457)
T 1xm9_A          245 SSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQ  324 (457)
T ss_dssp             ---------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHH
T ss_pred             cccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHH
Confidence                                                               1245667789999999976432   22 3


Q ss_pred             HHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCch-hhcchhhhHHHHHHHhhcCC---CHHHHHHHHHHHHHHH
Q 021317          212 QLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE-KRLSSSVLEKIVYDIAARVD---GADKAAETAKRLLQDM  287 (314)
Q Consensus       212 ~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~-~~~~~~~~~~lv~~l~~~~~---~~~~~~~~A~~~L~~l  287 (314)
                      ..+.+.|++|.|++++.++++.+++.|+++|++|+.+.+. ..+..+++++++..|.....   .+++....|..+|.++
T Consensus       325 ~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni  404 (457)
T 1xm9_A          325 LIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNL  404 (457)
T ss_dssp             HHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHH
Confidence            3344689999999999999999999999999999987643 45567889988877762211   1356778889999998


Q ss_pred             HHHHHH
Q 021317          288 VQRSME  293 (314)
Q Consensus       288 ~~~s~~  293 (314)
                      ...+.+
T Consensus       405 ~~~~~~  410 (457)
T 1xm9_A          405 MASQPQ  410 (457)
T ss_dssp             HTTCTH
T ss_pred             HhcCHH
Confidence            865543

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=1.8e-31  Score=254.65  Aligned_cols=282  Identities=17%  Similarity=0.187  Sum_probs=229.4

Q ss_pred             eeeccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC--CCChhHHhhc
Q 021317           13 EVFMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA--APNKPAIAAS   89 (314)
Q Consensus        13 ~v~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~--~~~~~~i~~~   89 (314)
                      .|.+|.++++.+|..|+++|. ++..++++|..+++.|+||+|+++|.++++++++.|+++|.||+..  +++|..|.+.
T Consensus        53 LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~  132 (584)
T 3l6x_A           53 VIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNC  132 (584)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHT
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHc
Confidence            378899999999999999999 7778999999999999999999999999999999999999999984  6899999999


Q ss_pred             CcHHHHHHHhcc-CCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhc----------------cCCchHHHHH
Q 021317           90 GAAPLLVQILHS-GSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKD----------------CKKYSKFAEK  152 (314)
Q Consensus        90 g~l~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~----------------~~~~~~~~~~  152 (314)
                      |+||+|+++|.+ ++.+++++++++|+||+.+++++..|++ +++++|++++..                ...+..++++
T Consensus       133 GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~n  211 (584)
T 3l6x_A          133 DGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTN  211 (584)
T ss_dssp             THHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHH
T ss_pred             CCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHH
Confidence            999999999998 5889999999999999999999999996 579999998721                1224588999


Q ss_pred             HHHHHHHhcCChh-hhhHHHhccCCHHHHHHHhhc---------------------------------------------
Q 021317          153 ATALLEILSSSEE-GRIAITNSDGGILTLVETVED---------------------------------------------  186 (314)
Q Consensus       153 a~~~L~~L~~~~~-~~~~i~~~~g~v~~Lv~ll~~---------------------------------------------  186 (314)
                      |+++|.||+.+.+ +|..++...|+++.|+.++++                                             
T Consensus       212 Aa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~  291 (584)
T 3l6x_A          212 TAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVAN  291 (584)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC----------
T ss_pred             HHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccc
Confidence            9999999998864 477777445666666666542                                             


Q ss_pred             -----------------------------CCHHHHHHHHHHHHHhhccCc---HHHHHHHHHcCChHHHHHhhhcCCHHH
Q 021317          187 -----------------------------GSLVSTQHAVGALLSLCQSCR---DKYRQLILKEGAIPGLLRLTVEGTFEA  234 (314)
Q Consensus       187 -----------------------------~~~~~~~~A~~~L~~L~~~~~---~~~~~~i~~~g~v~~Lv~ll~~~~~~~  234 (314)
                                                   .++.+++.|+++|+|||.+..   ..++..+.+.|+++.|++++.++++.+
T Consensus       292 ~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v  371 (584)
T 3l6x_A          292 NTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERV  371 (584)
T ss_dssp             ----CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHH
T ss_pred             cccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHH
Confidence                                         234556677777777765431   133444555789999999999999999


Q ss_pred             HHHHHHHHHHhhcCCch-hhcchhhhHHHHHHHhhcCCC-----HHHHHHHHHHHHHHHHHHHHHHh
Q 021317          235 QERARTLLDLLRDTPQE-KRLSSSVLEKIVYDIAARVDG-----ADKAAETAKRLLQDMVQRSMELS  295 (314)
Q Consensus       235 ~~~A~~~L~~l~~~~~~-~~~~~~~~~~lv~~l~~~~~~-----~~~~~~~A~~~L~~l~~~s~~~~  295 (314)
                      ++.|+++|+||+.++.. ..+..|+++.+|..|......     .++....|..+|.|++..+++..
T Consensus       372 ~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~  438 (584)
T 3l6x_A          372 VKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAA  438 (584)
T ss_dssp             HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHH
Confidence            99999999999987743 456788899888777632111     36778899999999986655443

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=100.00  E-value=5.7e-32  Score=245.36  Aligned_cols=239  Identities=21%  Similarity=0.230  Sum_probs=207.0

Q ss_pred             CHHHHHHHHHHhH-hhccCchhHHHHHhc-CCcHHHHHHhcCCCHHHHHHHHHHHHHhccC--CCChhHHhhcCcHHHHH
Q 021317           21 EGYARRLNLMGPL-WQLSKTRNKVKIATA-GAIPPLVELLKFQNGTLRELAAAAILTLSAA--APNKPAIAASGAAPLLV   96 (314)
Q Consensus        21 ~~~~~~~a~~al~-l~~~~~~~~~~l~~~-g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~--~~~~~~i~~~g~l~~Lv   96 (314)
                      ++.+|+.|+++|. ++..++++|..+... |++|.|+++|+++++++++.|+++|.||+..  +++|..|.+.|++|+|+
T Consensus        97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv  176 (354)
T 3nmw_A           97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM  176 (354)
T ss_dssp             HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHH
Confidence            5788999999999 666677788888654 5599999999999999999999999999985  46899999999999999


Q ss_pred             HHh-ccCCHHHHHHHHHHHHHhcC-CCCCchhhh-hcCCcHHHHHHhhccCCc--hHHHHHHHHHHHHhcC----Chhhh
Q 021317           97 QIL-HSGSVQGRVDAVTALHYLST-CKENSSPIL-DATAVPPLINLLKDCKKY--SKFAEKATALLEILSS----SEEGR  167 (314)
Q Consensus        97 ~lL-~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~-~~g~i~~Lv~lL~~~~~~--~~~~~~a~~~L~~L~~----~~~~~  167 (314)
                      ++| +++++.+++.|+.+|+||+. +++++..++ ..|+++.|+++|.++++.  ..+++.|+++|+||+.    +++++
T Consensus       177 ~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~  256 (354)
T 3nmw_A          177 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHR  256 (354)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHH
Confidence            975 66789999999999999997 678899998 689999999999886542  1578899999999995    78888


Q ss_pred             hHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 021317          168 IAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRD  247 (314)
Q Consensus       168 ~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~  247 (314)
                      ..+. +.|+++.|+.+|++++..+++.|+++|+||+..++ +.++.+++.|+++.|+++++++++.+++.|+++|.+|+.
T Consensus       257 ~~i~-~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~-~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~  334 (354)
T 3nmw_A          257 QILR-ENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNP-KDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA  334 (354)
T ss_dssp             HHHH-TTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCH-HHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred             HHHH-HcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCH-HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence            8888 79999999999999999999999999999997654 789999999999999999999999999999999999999


Q ss_pred             CCchhhcchhhhHH
Q 021317          248 TPQEKRLSSSVLEK  261 (314)
Q Consensus       248 ~~~~~~~~~~~~~~  261 (314)
                      +.+.++.+..++.+
T Consensus       335 ~~~~~~~~~~~~~~  348 (354)
T 3nmw_A          335 NRPAKYKDANIMSP  348 (354)
T ss_dssp             TCCGGGC-------
T ss_pred             CCHHHHhhhcccCC
Confidence            88766665555443

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.97  E-value=1.4e-29  Score=241.30  Aligned_cols=281  Identities=15%  Similarity=0.147  Sum_probs=240.4

Q ss_pred             eeccc-cCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC-CChhHHhhcC
Q 021317           14 VFMET-YFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA-PNKPAIAASG   90 (314)
Q Consensus        14 v~~l~-~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~~~~~i~~~g   90 (314)
                      |.+|+ ++++.+|..|+++|. +++.+++++..+++.|++|.|+.+|.++++++++.|+++|+||+.+. .++..+.+.|
T Consensus       106 V~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G  185 (510)
T 3ul1_B          106 VSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHG  185 (510)
T ss_dssp             HHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence            56675 456899999999999 77889999999999999999999999999999999999999999874 6788889999


Q ss_pred             cHHHHHHHhccCC-----HHHHHHHHHHHHHhcCCCCCchhhhh-cCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCCh
Q 021317           91 AAPLLVQILHSGS-----VQGRVDAVTALHYLSTCKENSSPILD-ATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE  164 (314)
Q Consensus        91 ~l~~Lv~lL~~~~-----~~~~~~a~~~L~nLs~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~  164 (314)
                      ++++|+.+|.+++     ...+..++++|.|++.+......+.. .|+++.|+.++.+.++  +++..++++|++|+.+.
T Consensus       186 ~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~--~v~~~A~~aL~~L~~~~  263 (510)
T 3ul1_B          186 AIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP--EVLADSCWAISYLTDGP  263 (510)
T ss_dssp             CHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCH--HHHHHHHHHHHHHTSSC
T ss_pred             ChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCH--HHHHHHHHHHHHHhhch
Confidence            9999999998754     45788999999999987766655554 7899999999988654  78899999999999887


Q ss_pred             hhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHH
Q 021317          165 EGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDL  244 (314)
Q Consensus       165 ~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~  244 (314)
                      +.+..++.+.|+++.|+.+|.+++..++..++++|+|++..++ ..+..+.+.|+++.|+.++++.++.+++.|+|+|.|
T Consensus       264 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~-~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~n  342 (510)
T 3ul1_B          264 NERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD-EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSN  342 (510)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHH
T ss_pred             hhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCH-HHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            6665555489999999999999999999999999999998764 678889999999999999999999999999999999


Q ss_pred             hhcCCch---hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 021317          245 LRDTPQE---KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELSMTRIQ  300 (314)
Q Consensus       245 l~~~~~~---~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~~~~~~~~~  300 (314)
                      ++.+...   .+...|+++.++..+.   +++.+.++.|..+|.|+...........++
T Consensus       343 l~a~~~~~~~~v~~~g~i~~Lv~lL~---~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~  398 (510)
T 3ul1_B          343 ITAGRQDQIQQVVNHGLVPFLVGVLS---KADFKTQKEAAWAITNYTSGGTVEQIVYLV  398 (510)
T ss_dssp             HTTSCHHHHHHHHHTTHHHHHHHHHH---SSCHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             HHcCcHHHHHHHHhcCCHHHHHHHHc---CCCHHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence            9987643   3556788998887776   566899999999999999764444444443

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.97  E-value=1.9e-30  Score=242.22  Aligned_cols=232  Identities=22%  Similarity=0.241  Sum_probs=205.0

Q ss_pred             CCHHHHHHHHHHhH-hhccCchhHHHHHh-cCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC--CCChhHHhhcCcHHHH
Q 021317           20 FEGYARRLNLMGPL-WQLSKTRNKVKIAT-AGAIPPLVELLKFQNGTLRELAAAAILTLSAA--APNKPAIAASGAAPLL   95 (314)
Q Consensus        20 ~~~~~~~~a~~al~-l~~~~~~~~~~l~~-~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~--~~~~~~i~~~g~l~~L   95 (314)
                      .++..|+.|+++|. ++..++.++..+.. .|++|.|+.+|.++++++++.|+++|.||+..  +++|..|.+.|++|+|
T Consensus       212 ~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~L  291 (458)
T 3nmz_A          212 YSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL  291 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHH
Confidence            35778999999999 66666668877765 45699999999999999999999999999985  4688999999999999


Q ss_pred             HHHh-ccCCHHHHHHHHHHHHHhcC-CCCCchhhh-hcCCcHHHHHHhhccCCch--HHHHHHHHHHHHhcC----Chhh
Q 021317           96 VQIL-HSGSVQGRVDAVTALHYLST-CKENSSPIL-DATAVPPLINLLKDCKKYS--KFAEKATALLEILSS----SEEG  166 (314)
Q Consensus        96 v~lL-~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~--~~~~~a~~~L~~L~~----~~~~  166 (314)
                      +++| +++++.+++.++.+|+||+. +++++..|+ ..|+++.|+.+|.++++..  .+++.|+++|+||+.    ++++
T Consensus       292 V~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~  371 (458)
T 3nmz_A          292 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH  371 (458)
T ss_dssp             HHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHH
Confidence            9975 56789999999999999997 778999998 6899999999999865421  478899999999995    7888


Q ss_pred             hhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 021317          167 RIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLR  246 (314)
Q Consensus       167 ~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~  246 (314)
                      +..+. +.|+++.|+.+|++++..+++.|+++|+||+..++ +.+..+++.|+++.|+++++++++.+++.|+++|.||+
T Consensus       372 ~~~i~-~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~-~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~  449 (458)
T 3nmz_A          372 RQILR-ENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNP-KDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM  449 (458)
T ss_dssp             HHHHH-HTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCH-HHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHH-HcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence            88888 79999999999999999999999999999997654 78999999999999999999999999999999999999


Q ss_pred             cCCchhh
Q 021317          247 DTPQEKR  253 (314)
Q Consensus       247 ~~~~~~~  253 (314)
                      .+.+.++
T Consensus       450 ~~~p~ky  456 (458)
T 3nmz_A          450 ANRPAKY  456 (458)
T ss_dssp             TCCSCC-
T ss_pred             cCCHhhh
Confidence            8876554

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.97  E-value=2.6e-30  Score=223.62  Aligned_cols=231  Identities=23%  Similarity=0.230  Sum_probs=210.6

Q ss_pred             eeccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhcc-CCCChhHHhhcCc
Q 021317           14 VFMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSA-AAPNKPAIAASGA   91 (314)
Q Consensus        14 v~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~-~~~~~~~i~~~g~   91 (314)
                      +.+|+++++++|..|+++|. +++.+++++..+.+.|++|.|+++|++++++++..|+.+|.+++. +++++..+.+.|+
T Consensus        18 ~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~   97 (252)
T 4db8_A           18 TQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGA   97 (252)
T ss_dssp             HHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Confidence            57889999999999999996 666688899999999999999999999999999999999999998 5688999999999


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCc-hhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCCh-hhhhH
Q 021317           92 APLLVQILHSGSVQGRVDAVTALHYLSTCKENS-SPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE-EGRIA  169 (314)
Q Consensus        92 l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~-~~~~~  169 (314)
                      ++.|+++|.++++.++..|+++|.||+.+++++ ..+.+.|+++.|+++|.+++  ..++..++++|+||+.+. +.+..
T Consensus        98 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~~~~  175 (252)
T 4db8_A           98 LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN--EQILQEALWALSNIASGGNEQIQA  175 (252)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSC--HHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCC--HHHHHHHHHHHHHHHcCChHHHHH
Confidence            999999999999999999999999999998888 88889999999999998864  388999999999999864 55566


Q ss_pred             HHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 021317          170 ITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDT  248 (314)
Q Consensus       170 i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~  248 (314)
                      +. +.|+++.|+.++.++++.+++.|+++|.+|+..++ +.+..+.+.|+++.|+++++++++.+++.|+++|.+|+.+
T Consensus       176 ~~-~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~~  252 (252)
T 4db8_A          176 VI-DAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH  252 (252)
T ss_dssp             HH-HTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC--
T ss_pred             HH-HCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCH-HHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhcC
Confidence            66 79999999999999999999999999999997764 6788899999999999999999999999999999999753

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.97  E-value=7.5e-30  Score=251.02  Aligned_cols=276  Identities=15%  Similarity=0.091  Sum_probs=235.6

Q ss_pred             eeeccccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHh---hc
Q 021317           13 EVFMETYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIA---AS   89 (314)
Q Consensus        13 ~v~~l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~---~~   89 (314)
                      .+.+++++++.+|+.|+++|.+.+.++++|..+++.|++|+|+.+|.++++..++.|+++|.||+.+.+....+.   ..
T Consensus       500 LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~  579 (810)
T 3now_A          500 LCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSL  579 (810)
T ss_dssp             HHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhh
Confidence            368889999999999999999666788999999999999999999999999999999999999987644333221   24


Q ss_pred             CcHHHHHHHhccC-CHHHHHHHHHHHHHhcCC-CCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhh
Q 021317           90 GAAPLLVQILHSG-SVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGR  167 (314)
Q Consensus        90 g~l~~Lv~lL~~~-~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~  167 (314)
                      |++|+|+.+|.++ +...+..|+++|.||+.. ++++..+++.|+++.|+.+|.++++  .++..|+++|+||+.+++.+
T Consensus       580 ~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~--~Vq~~A~~~L~NLa~~~~~~  657 (810)
T 3now_A          580 DVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHL--YLTRAAAQCLCNLVMSEDVI  657 (810)
T ss_dssp             HTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCT--THHHHHHHHHHHHTTSHHHH
T ss_pred             cHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCH--HHHHHHHHHHHHHhCChHHH
Confidence            6999999999876 455667899999999976 5788999999999999999998765  78899999999999999999


Q ss_pred             hHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHH-cCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 021317          168 IAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK-EGAIPGLLRLTVEGTFEAQERARTLLDLLR  246 (314)
Q Consensus       168 ~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~-~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~  246 (314)
                      ..++...|+++.|+.++.+.+..+++.|+++|+||+.+++ +..+.+++ .|+++.|+++++++++.+|+.|+++|.|+.
T Consensus       658 ~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~-~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~  736 (810)
T 3now_A          658 KMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSV-KCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMI  736 (810)
T ss_dssp             HHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCH-HHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCH-HHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            8888337999999999999999999999999999998653 56778888 899999999999999999999999999998


Q ss_pred             cCCch---hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Q 021317          247 DTPQE---KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRS  291 (314)
Q Consensus       247 ~~~~~---~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s  291 (314)
                      .+..+   .+.+.|+++.++..+......+.+..+.|..+|.++.+..
T Consensus       737 ~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g  784 (810)
T 3now_A          737 NAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYR  784 (810)
T ss_dssp             TTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred             hCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCC
Confidence            86542   4567888888765554221235788999999999998653

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.97  E-value=2.9e-29  Score=235.97  Aligned_cols=271  Identities=18%  Similarity=0.202  Sum_probs=223.9

Q ss_pred             eeeccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhc-CCCHHHHHHHHHHHHHhccCCCChhHHhhcC
Q 021317           13 EVFMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLK-FQNGTLRELAAAAILTLSAAAPNKPAIAASG   90 (314)
Q Consensus        13 ~v~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~-~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g   90 (314)
                      .+.+|+++++.+|+.|+++|. ++..++++|..+++.|++|+|+++|. ++++++++.|+++|+||+.++++|..+.+ |
T Consensus        49 Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g  127 (457)
T 1xm9_A           49 LVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-D  127 (457)
T ss_dssp             HHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-H
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-c
Confidence            367889999999999999999 66666999999999999999999998 88999999999999999999999999999 9


Q ss_pred             cHHHHHHHhc--------cC--------CHHHHHHHHHHHHHhcCCCCCchhhhhc-CCcHHHHHHhhcc------CC--
Q 021317           91 AAPLLVQILH--------SG--------SVQGRVDAVTALHYLSTCKENSSPILDA-TAVPPLINLLKDC------KK--  145 (314)
Q Consensus        91 ~l~~Lv~lL~--------~~--------~~~~~~~a~~~L~nLs~~~~~~~~i~~~-g~i~~Lv~lL~~~------~~--  145 (314)
                      ++|+|+++|.        ++        ++.+..+|+++|+||+.+++++..+++. |++++|+.+|+++      +.  
T Consensus       128 ~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~  207 (457)
T 1xm9_A          128 ALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKS  207 (457)
T ss_dssp             HHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTT
T ss_pred             cHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHH
Confidence            9999999993        22        4566679999999999888899999997 9999999988741      00  


Q ss_pred             --------------------------------------------------------------------------------
Q 021317          146 --------------------------------------------------------------------------------  145 (314)
Q Consensus       146 --------------------------------------------------------------------------------  145 (314)
                                                                                                      
T Consensus       208 ~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~  287 (457)
T 1xm9_A          208 VENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRT  287 (457)
T ss_dssp             HHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHH
T ss_pred             HHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHH
Confidence                                                                                            


Q ss_pred             ---------chHHHHHHHHHHHHhcCChhh-----hhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHH
Q 021317          146 ---------YSKFAEKATALLEILSSSEEG-----RIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYR  211 (314)
Q Consensus       146 ---------~~~~~~~a~~~L~~L~~~~~~-----~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~  211 (314)
                               .+.+++.|+++|+||+.+...     .+.++.+.|++|.|+++|.+++..++..|+++|.||+.+.  +++
T Consensus       288 L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~--~~~  365 (457)
T 1xm9_A          288 YLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP--LLH  365 (457)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG--GGH
T ss_pred             HHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH--HHH
Confidence                     124556678899999876432     1334446899999999999999999999999999999864  445


Q ss_pred             HHHHHcCChHHHHHhhhcCC------HHHHHHHHHHHHHhhcCCch---hhcchhhhHHHHHHHhhcCCC-HHHHHHHHH
Q 021317          212 QLILKEGAIPGLLRLTVEGT------FEAQERARTLLDLLRDTPQE---KRLSSSVLEKIVYDIAARVDG-ADKAAETAK  281 (314)
Q Consensus       212 ~~i~~~g~v~~Lv~ll~~~~------~~~~~~A~~~L~~l~~~~~~---~~~~~~~~~~lv~~l~~~~~~-~~~~~~~A~  281 (314)
                      ..+ ..|+++.|++++.+++      +++...++++|.++..+..+   .+.+.|++++++..+.   .+ +++++++|.
T Consensus       366 ~~i-~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~---~~~~~~i~~~A~  441 (457)
T 1xm9_A          366 RVM-GNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCR---SSASPKAAEAAR  441 (457)
T ss_dssp             HHH-HHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred             HHH-HHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHc---CCCcHHHHHHHH
Confidence            544 4579999999998864      36788899999999765543   4567899999987665   44 689999999


Q ss_pred             HHHHHHHHH
Q 021317          282 RLLQDMVQR  290 (314)
Q Consensus       282 ~~L~~l~~~  290 (314)
                      .+|.++-.+
T Consensus       442 ~~L~~~~~~  450 (457)
T 1xm9_A          442 LLLSDMWSS  450 (457)
T ss_dssp             HHHHTTSSS
T ss_pred             HHHHHHHcc
Confidence            999987643

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.97  E-value=1.4e-28  Score=235.42  Aligned_cols=281  Identities=15%  Similarity=0.151  Sum_probs=240.3

Q ss_pred             eeccc-cCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC-CChhHHhhcC
Q 021317           14 VFMET-YFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA-PNKPAIAASG   90 (314)
Q Consensus        14 v~~l~-~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~~~~~i~~~g   90 (314)
                      |.+|+ ++++.+|..|+++|. ++..+++++..+++.|++|.|+.+|.++++++++.|+++|+||+.+. +++..+.+.|
T Consensus       125 v~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g  204 (529)
T 3tpo_A          125 VSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHG  204 (529)
T ss_dssp             HHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcC
Confidence            44554 566999999999999 77788888899999999999999999999999999999999999864 7788999999


Q ss_pred             cHHHHHHHhccCC-----HHHHHHHHHHHHHhcCCCCCchhhhh-cCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCCh
Q 021317           91 AAPLLVQILHSGS-----VQGRVDAVTALHYLSTCKENSSPILD-ATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE  164 (314)
Q Consensus        91 ~l~~Lv~lL~~~~-----~~~~~~a~~~L~nLs~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~  164 (314)
                      ++++|+.+|..++     ......++++|.|++.+......+.. .|++|.|+.++.++++  +++..++++|.+++.+.
T Consensus       205 ~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~--~v~~~a~~aL~~l~~~~  282 (529)
T 3tpo_A          205 AIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP--EVLADSCWAISYLTDGP  282 (529)
T ss_dssp             CHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCH--HHHHHHHHHHHHHHSSC
T ss_pred             CcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcH--HHHHHHHHHHHHhhhhh
Confidence            9999999998653     45788999999999987766555544 7899999999988654  78889999999999887


Q ss_pred             hhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHH
Q 021317          165 EGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDL  244 (314)
Q Consensus       165 ~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~  244 (314)
                      +.+..++.+.|+++.|+.+|.+.+..++..|+.+|+|++.+++ ..+..+.+.|+++.|+.++.++++.+++.|+|+|.|
T Consensus       283 ~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~-~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~n  361 (529)
T 3tpo_A          283 NERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD-EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSN  361 (529)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHH
T ss_pred             hhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccch-HHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            6665554489999999999999999999999999999998764 778889999999999999999999999999999999


Q ss_pred             hhcCCch---hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 021317          245 LRDTPQE---KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELSMTRIQ  300 (314)
Q Consensus       245 l~~~~~~---~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~~~~~~~~~  300 (314)
                      ++.+...   .+...|+++.++..+.   +++.+.++.|..+|.++...........++
T Consensus       362 l~~~~~~~~~~v~~~g~i~~Lv~lL~---~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~  417 (529)
T 3tpo_A          362 ITAGRQDQIQQVVNHGLVPFLVGVLS---KADFKTQKAAAWAITNYTSGGTVEQIVYLV  417 (529)
T ss_dssp             HHTSCHHHHHHHHHTTHHHHHHHHHH---SSCHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             HhcccHHHHHHHHhcCcHHHHHHHhc---CCCHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            9987743   3556889998887776   566899999999999999764444444444

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.97  E-value=2.9e-29  Score=216.22  Aligned_cols=233  Identities=21%  Similarity=0.248  Sum_probs=213.7

Q ss_pred             eeccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC-CCChhHHhhcCc
Q 021317           14 VFMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA-APNKPAIAASGA   91 (314)
Q Consensus        14 v~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~i~~~g~   91 (314)
                      +.++.++++++|..|+++|. ++..+++++..+.+.|+++.|+++|.+++++++..++.+|.+++.+ ++++..+.+.|+
T Consensus         8 ~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~   87 (252)
T 4hxt_A            8 VKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGG   87 (252)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCC
Confidence            56788899999999999999 7777778999999999999999999999999999999999999998 688999999999


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHhc-CCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChh-hhhH
Q 021317           92 APLLVQILHSGSVQGRVDAVTALHYLS-TCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEE-GRIA  169 (314)
Q Consensus        92 l~~Lv~lL~~~~~~~~~~a~~~L~nLs-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~-~~~~  169 (314)
                      ++.|+.+|.++++.++..|+++|.||+ .+++++..+.+.|+++.|++++.++++  .++..++++|+||+.+.+ .+..
T Consensus        88 i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~--~~~~~a~~~L~~l~~~~~~~~~~  165 (252)
T 4hxt_A           88 VEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDS--EVQKEAARALANIASGPDEAIKA  165 (252)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCH--HHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCH--HHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999999999999999999999 677888999999999999999998654  889999999999998654 4566


Q ss_pred             HHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCC
Q 021317          170 ITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP  249 (314)
Q Consensus       170 i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~  249 (314)
                      +. +.|+++.|+.++.++++.++..|+++|.+++..++ +.++.+.+.|+++.|+++++++++.+++.|+++|.+++.+.
T Consensus       166 ~~-~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  243 (252)
T 4hxt_A          166 IV-DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPT-SAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG  243 (252)
T ss_dssp             HH-HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBH-HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred             HH-HCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Confidence            66 79999999999999999999999999999998654 77888999999999999999999999999999999999766


Q ss_pred             c
Q 021317          250 Q  250 (314)
Q Consensus       250 ~  250 (314)
                      .
T Consensus       244 ~  244 (252)
T 4hxt_A          244 W  244 (252)
T ss_dssp             B
T ss_pred             C
Confidence            4

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.97  E-value=1.2e-29  Score=249.46  Aligned_cols=273  Identities=17%  Similarity=0.132  Sum_probs=230.9

Q ss_pred             eeccccCCHHHHHHHHHHhHhhccCc------------------------------hhH---HHHHhcCCcHHHHHHhcC
Q 021317           14 VFMETYFEGYARRLNLMGPLWQLSKT------------------------------RNK---VKIATAGAIPPLVELLKF   60 (314)
Q Consensus        14 v~~l~~~~~~~~~~a~~al~l~~~~~------------------------------~~~---~~l~~~g~v~~Lv~lL~~   60 (314)
                      |.+++++++.++..|+++|.+...+.                              .++   ..+++.|++|.|+.+|++
T Consensus       427 V~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s  506 (810)
T 3now_A          427 MDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKT  506 (810)
T ss_dssp             HHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTC
T ss_pred             HHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcC
Confidence            67788899999999999999544432                              123   677899999999999999


Q ss_pred             CCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhh---hcCCcHHHH
Q 021317           61 QNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPIL---DATAVPPLI  137 (314)
Q Consensus        61 ~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~---~~g~i~~Lv  137 (314)
                      +++.+++.|+++|.||+.+++++..+.+.|++|+|+.+|.++++..+..|+++|.||+.+.+....+.   ..|++++|+
T Consensus       507 ~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv  586 (810)
T 3now_A          507 ESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLL  586 (810)
T ss_dssp             CCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHH
Confidence            99999999999999999988899999999999999999999999999999999999996544333221   247999999


Q ss_pred             HHhhccCCchHHHHHHHHHHHHhcCC-hhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHH
Q 021317          138 NLLKDCKKYSKFAEKATALLEILSSS-EEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK  216 (314)
Q Consensus       138 ~lL~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~  216 (314)
                      .+|.++.. ......|+.+|.||+.. ++++..++ +.|+++.|+.+|.++++.+++.|+++|+||+.++  +.+..+.+
T Consensus       587 ~LL~~~~~-~l~~~eAl~AL~NLa~~~d~~~~~Ii-~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~--~~~~~~v~  662 (810)
T 3now_A          587 NLLQQDCT-ALENFESLMALTNLASMNESVRQRII-KEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSE--DVIKMFEG  662 (810)
T ss_dssp             HTTSTTSC-HHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSH--HHHHHHHS
T ss_pred             HHhCCCCc-HHHHHHHHHHHHHHhcCCHHHHHHHH-HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh--HHHHHHHh
Confidence            99986432 23345799999999988 56788888 6899999999999999999999999999999864  56777776


Q ss_pred             -cCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCc---hhhcc-hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Q 021317          217 -EGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQ---EKRLS-SSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRS  291 (314)
Q Consensus       217 -~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~---~~~~~-~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s  291 (314)
                       .|+++.|+.++.+.+..+|+.|+|+|.+++.+.+   ..++. .|+++.++..+.   +++++.++.|.++|.|+...+
T Consensus       663 ~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~---s~d~~vq~~A~~aL~NL~~~s  739 (810)
T 3now_A          663 NNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIA---NPSPAVQHRGIVIILNMINAG  739 (810)
T ss_dssp             SSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHT---CSSHHHHHHHHHHHHHHHTTC
T ss_pred             ccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHC---CCCHHHHHHHHHHHHHHHhCC
Confidence             7899999999999999999999999999998432   24555 789998887665   567999999999999999765


Q ss_pred             HH
Q 021317          292 ME  293 (314)
Q Consensus       292 ~~  293 (314)
                      .+
T Consensus       740 ~e  741 (810)
T 3now_A          740 EE  741 (810)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.97  E-value=2.3e-29  Score=239.83  Aligned_cols=276  Identities=16%  Similarity=0.143  Sum_probs=233.8

Q ss_pred             eeccccCCHHHHHHHHHHhH-hhc-cCchhHHHHHhcCCcHHHHHHhcC-CCHHHHHHHHHHHHHhccC-CCChhHHhhc
Q 021317           14 VFMETYFEGYARRLNLMGPL-WQL-SKTRNKVKIATAGAIPPLVELLKF-QNGTLRELAAAAILTLSAA-APNKPAIAAS   89 (314)
Q Consensus        14 v~~l~~~~~~~~~~a~~al~-l~~-~~~~~~~~l~~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~La~~-~~~~~~i~~~   89 (314)
                      |.++.|+|++.|..|+.+++ +++ +.......+++.|+||+|+++|++ ++++++..|+++|.||+.. ++++..+++.
T Consensus        63 v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~  142 (510)
T 3ul1_B           63 VKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDG  142 (510)
T ss_dssp             HHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHC
Confidence            57889999999999999998 443 333446788999999999999974 4689999999999999875 5778889999


Q ss_pred             CcHHHHHHHhccCCHHHHHHHHHHHHHhcCC-CCCchhhhhcCCcHHHHHHhhccCCc---hHHHHHHHHHHHHhcCChh
Q 021317           90 GAAPLLVQILHSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKY---SKFAEKATALLEILSSSEE  165 (314)
Q Consensus        90 g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~---~~~~~~a~~~L~~L~~~~~  165 (314)
                      |++|.|+++|.++++.+++.|+++|+||+.+ ++.+..+.+.|++++|+.++...+..   ..+...+++++.|++.+..
T Consensus       143 GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~  222 (510)
T 3ul1_B          143 GAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKN  222 (510)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCS
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhccc
Confidence            9999999999999999999999999999965 56788899999999999999875422   2466789999999999876


Q ss_pred             hhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 021317          166 GRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLL  245 (314)
Q Consensus       166 ~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l  245 (314)
                      ....+....|++|.|+.++.++++.++..|+++|.+|+..+. +..+.+.+.|+++.|++++.+.++.++..|+++|.++
T Consensus       223 ~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl  301 (510)
T 3ul1_B          223 PAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN-ERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI  301 (510)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCH-HHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchh-hhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHh
Confidence            665554357899999999999999999999999999998764 5667788899999999999999999999999999999


Q ss_pred             hcCCch---hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 021317          246 RDTPQE---KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSME  293 (314)
Q Consensus       246 ~~~~~~---~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~~  293 (314)
                      +.+...   ..+..|+++.++..|.   +.++..++.|.++|.++...+.+
T Consensus       302 ~~~~~~~~~~i~~~g~l~~L~~LL~---~~~~~v~~~A~~aL~nl~a~~~~  349 (510)
T 3ul1_B          302 VTGTDEQTQKVIDAGALAVFPSLLT---NPKTNIQKEATWTMSNITAGRQD  349 (510)
T ss_dssp             TTSCHHHHHHHHHTTGGGGCC-CTT---CSSHHHHHHHHHHHHHHTTSCHH
T ss_pred             hcCCHHHHHHHhhccchHHHHHHhc---CCCHHHHHHHHHHHHHHHcCcHH
Confidence            876643   3556788887765554   45688999999999999875544

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.96  E-value=2.1e-28  Score=234.16  Aligned_cols=276  Identities=16%  Similarity=0.145  Sum_probs=235.6

Q ss_pred             eeccccCCHHHHHHHHHHhH-hh-ccCchhHHHHHhcCCcHHHHHHhc-CCCHHHHHHHHHHHHHhccCC-CChhHHhhc
Q 021317           14 VFMETYFEGYARRLNLMGPL-WQ-LSKTRNKVKIATAGAIPPLVELLK-FQNGTLRELAAAAILTLSAAA-PNKPAIAAS   89 (314)
Q Consensus        14 v~~l~~~~~~~~~~a~~al~-l~-~~~~~~~~~l~~~g~v~~Lv~lL~-~~~~~~~~~a~~~L~~La~~~-~~~~~i~~~   89 (314)
                      +..+.++|++.|..|+.++. ++ .+.......+++.|++|.|+++|. +++++++..|+++|.|++..+ +++..+++.
T Consensus        82 v~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~  161 (529)
T 3tpo_A           82 VKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDG  161 (529)
T ss_dssp             HHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence            56788999999999999998 44 444455678899999999999996 456899999999999999865 567788999


Q ss_pred             CcHHHHHHHhccCCHHHHHHHHHHHHHhcC-CCCCchhhhhcCCcHHHHHHhhccCCc---hHHHHHHHHHHHHhcCChh
Q 021317           90 GAAPLLVQILHSGSVQGRVDAVTALHYLST-CKENSSPILDATAVPPLINLLKDCKKY---SKFAEKATALLEILSSSEE  165 (314)
Q Consensus        90 g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~---~~~~~~a~~~L~~L~~~~~  165 (314)
                      |++|.|+.+|.++++.+++.|+++|+||+. +++++..+++.|++++|+.+|..++..   ..+...+++++++++.+..
T Consensus       162 Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~  241 (529)
T 3tpo_A          162 GAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKN  241 (529)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCT
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhccc
Confidence            999999999999999999999999999996 467889999999999999999875321   2466789999999999876


Q ss_pred             hhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 021317          166 GRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLL  245 (314)
Q Consensus       166 ~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l  245 (314)
                      ....+....|++|.|+.++.++++.++..|+++|.+++.... +..+.+.+.|+++.|++++.+.++.++..|+++|.++
T Consensus       242 ~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~-~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl  320 (529)
T 3tpo_A          242 PAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN-ERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI  320 (529)
T ss_dssp             TCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCH-HHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred             chhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhh-hhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHH
Confidence            655554357899999999999999999999999999998764 6677788899999999999999999999999999999


Q ss_pred             hcCCch---hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 021317          246 RDTPQE---KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSME  293 (314)
Q Consensus       246 ~~~~~~---~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~~  293 (314)
                      +.+...   .....|+++.++..|.   +..+..++.|.++|.++...+.+
T Consensus       321 ~~~~~~~~~~i~~~g~l~~L~~LL~---~~~~~i~~~a~~aL~nl~~~~~~  368 (529)
T 3tpo_A          321 VTGTDEQTQKVIDAGALAVFPSLLT---NPKTNIQKEATWTMSNITAGRQD  368 (529)
T ss_dssp             TTSCHHHHHHHHHTTGGGGHHHHTT---CSSHHHHHHHHHHHHHHHTSCHH
T ss_pred             HccchHHHHHHhhcccHHHHHHHHc---CCCHHHHHHHHHHHHHHhcccHH
Confidence            876643   4567889998876665   45688999999999999976544

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.96  E-value=1.3e-27  Score=228.42  Aligned_cols=270  Identities=18%  Similarity=0.152  Sum_probs=237.5

Q ss_pred             eeccccCC-HHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC-CChhHHhhcC
Q 021317           14 VFMETYFE-GYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA-PNKPAIAASG   90 (314)
Q Consensus        14 v~~l~~~~-~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~~~~~i~~~g   90 (314)
                      +.+|.+++ +.+|..|+++|. ++..+++++..+++.|++|.|+.+|.+++++++..|+++|++|+.+. .++..+.+.|
T Consensus       123 v~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g  202 (528)
T 4b8j_A          123 VQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANG  202 (528)
T ss_dssp             HHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCC
Confidence            56777776 999999999999 77777999999999999999999999999999999999999999874 5688888999


Q ss_pred             cHHHHHHHh-ccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhh-
Q 021317           91 AAPLLVQIL-HSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRI-  168 (314)
Q Consensus        91 ~l~~Lv~lL-~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~-  168 (314)
                      ++++|+.+| .+.++.++..++++|.+|+...+........|+++.|+.++.+.+.  .++..++++|.+|+...+.+. 
T Consensus       203 ~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~--~v~~~a~~aL~~l~~~~~~~~~  280 (528)
T 4b8j_A          203 ALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDE--EVLTDACWALSYLSDGTNDKIQ  280 (528)
T ss_dssp             CHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCH--HHHHHHHHHHHHHTSSCHHHHH
T ss_pred             cHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHHcCCHHHHH
Confidence            999999999 6779999999999999999876666666678999999999988643  888999999999998876654 


Q ss_pred             HHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcC-CHHHHHHHHHHHHHhhc
Q 021317          169 AITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEG-TFEAQERARTLLDLLRD  247 (314)
Q Consensus       169 ~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~-~~~~~~~A~~~L~~l~~  247 (314)
                      .++ +.|+++.|+.+|.++++.++..|+++|.||+..++ ..++.+.+.|+++.|+.++.++ ++.++..|+++|.+++.
T Consensus       281 ~~~-~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~  358 (528)
T 4b8j_A          281 AVI-EAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDD-AQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITA  358 (528)
T ss_dssp             HHH-HTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH-HHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred             HHH-HcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCH-HHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC
Confidence            455 78999999999999999999999999999998764 6778888999999999999998 99999999999999997


Q ss_pred             CCch---hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Q 021317          248 TPQE---KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR  290 (314)
Q Consensus       248 ~~~~---~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~  290 (314)
                      +...   .....++++.++..|.   +++++.++.|..+|.++...
T Consensus       359 ~~~~~~~~~~~~~~i~~L~~lL~---~~~~~v~~~a~~aL~nl~~~  401 (528)
T 4b8j_A          359 GNKDQIQAVINAGIIGPLVNLLQ---TAEFDIKKEAAWAISNATSG  401 (528)
T ss_dssp             SCHHHHHHHHHTTCHHHHHHHHH---HSCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCHHHHHHHHh---cCCHHHHHHHHHHHHHHHcC
Confidence            6543   3456788898887776   34688999999999999976

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.96  E-value=4.5e-28  Score=231.19  Aligned_cols=285  Identities=16%  Similarity=0.142  Sum_probs=222.3

Q ss_pred             eeeccccCCHHHHHHHHHHhH-hhcc-CchhHHHHHhcCCcHHHHHHhcC-CCHHHHHHHHHHHHHhccCCCChhHHhhc
Q 021317           13 EVFMETYFEGYARRLNLMGPL-WQLS-KTRNKVKIATAGAIPPLVELLKF-QNGTLRELAAAAILTLSAAAPNKPAIAAS   89 (314)
Q Consensus        13 ~v~~l~~~~~~~~~~a~~al~-l~~~-~~~~~~~l~~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~La~~~~~~~~i~~~   89 (314)
                      +|.+|.++++.+|+.|+++|. ++.. +++||..+++.|+||+|+.+|.+ ++.++++.++.+|+||+.++++|..|++ 
T Consensus        95 LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-  173 (584)
T 3l6x_A           95 LVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-  173 (584)
T ss_dssp             HHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-
Confidence            368899999999999999999 5553 58999999999999999999986 5788999999999999999999999995 


Q ss_pred             CcHHHHHHHhc------------------cCCHHHHHHHHHHHHHhcCCC-CCchhhhhc-CCcHHHHHHhhcc----CC
Q 021317           90 GAAPLLVQILH------------------SGSVQGRVDAVTALHYLSTCK-ENSSPILDA-TAVPPLINLLKDC----KK  145 (314)
Q Consensus        90 g~l~~Lv~lL~------------------~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~-g~i~~Lv~lL~~~----~~  145 (314)
                      +++|+|++++.                  ..++.++.+|+++|+||+.+. +++..+++. |+++.|+.++++.    ..
T Consensus       174 ~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~  253 (584)
T 3l6x_A          174 HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDS  253 (584)
T ss_dssp             HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCC
T ss_pred             ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCc
Confidence            67999999872                  225799999999999999765 458888874 5566888877531    11


Q ss_pred             --------------------------------------------------------------------chHHHHHHHHHH
Q 021317          146 --------------------------------------------------------------------YSKFAEKATALL  157 (314)
Q Consensus       146 --------------------------------------------------------------------~~~~~~~a~~~L  157 (314)
                                                                                          ...+++.|+++|
T Consensus       254 ~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL  333 (584)
T 3l6x_A          254 DSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAI  333 (584)
T ss_dssp             SCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHH
Confidence                                                                                123445566666


Q ss_pred             HHhcCCh----hhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcC---
Q 021317          158 EILSSSE----EGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEG---  230 (314)
Q Consensus       158 ~~L~~~~----~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~---  230 (314)
                      +||+.+.    ..-+.++.+.|+++.|+.+|.+++..+++.|+++|+||+.+..  ++..| +.|+++.|++++.++   
T Consensus       334 ~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~--~~~~I-~~g~ip~LV~LL~~~~~~  410 (584)
T 3l6x_A          334 QNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDAR--NKELI-GKHAIPNLVKNLPGGQQN  410 (584)
T ss_dssp             HHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCS--CHHHH-HHHHHHHHHHTSSSSSCS
T ss_pred             HHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChh--HHHHH-HhCCHHHHHHHhcCCccc
Confidence            6665542    1112234467899999999999999999999999999998764  46555 779999999999876   


Q ss_pred             -----CHHHHHHHHHHHHHhhcCCch---hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 021317          231 -----TFEAQERARTLLDLLRDTPQE---KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELSMTRIQQR  302 (314)
Q Consensus       231 -----~~~~~~~A~~~L~~l~~~~~~---~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~~~~~~~~~~~  302 (314)
                           +..++..|+++|.|++....+   .+.+.|+++.++..+.... ..+++++.|..+|.+|..+   ...+...++
T Consensus       411 ~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~-~~~~v~k~Aa~vL~nl~~~---~elr~~~kk  486 (584)
T 3l6x_A          411 SSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGN-RSEKEVRAAALVLQTIWGY---KELRKPLEK  486 (584)
T ss_dssp             GGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSS-SCHHHHHHHHHHHHHHHTS---HHHHHHHHT
T ss_pred             ccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCC-CChHHHHHHHHHHHHHHcC---HHHHHHHHH
Confidence                 467889999999999765532   4567899999987776221 2589999999999999974   333333444


Q ss_pred             hhh
Q 021317          303 AAS  305 (314)
Q Consensus       303 ~~~  305 (314)
                      .++
T Consensus       487 ~G~  489 (584)
T 3l6x_A          487 EGW  489 (584)
T ss_dssp             TTC
T ss_pred             cCC
Confidence            444

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.96  E-value=1.4e-27  Score=205.76  Aligned_cols=236  Identities=21%  Similarity=0.288  Sum_probs=211.5

Q ss_pred             CCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC-CChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC-CCCchh
Q 021317           49 GAIPPLVELLKFQNGTLRELAAAAILTLSAAA-PNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC-KENSSP  126 (314)
Q Consensus        49 g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~  126 (314)
                      |++|.|+++|.+++++++..|+.+|.+++..+ +++..+.+.|+++.|+++|.++++.++..++++|.+|+.. ++++..
T Consensus         2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~   81 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA   81 (252)
T ss_dssp             CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence            67899999999999999999999999999876 4888999999999999999999999999999999999976 788999


Q ss_pred             hhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhc-CChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcc
Q 021317          127 ILDATAVPPLINLLKDCKKYSKFAEKATALLEILS-SSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQS  205 (314)
Q Consensus       127 i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~-~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~  205 (314)
                      +.+.|+++.|+.++++++  ..++..++++|.+|+ .+++.+..+. +.|+++.|+.+++++++.++..|+++|++|+..
T Consensus        82 ~~~~~~i~~l~~ll~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~  158 (252)
T 4hxt_A           82 IVDAGGVEVLVKLLTSTD--SEVQKEAARALANIASGPDEAIKAIV-DAGGVEVLVKLLTSTDSEVQKEAARALANIASG  158 (252)
T ss_dssp             HHHTTHHHHHHHHTTCSS--HHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHCCCHHHHHHHHcCCC--HHHHHHHHHHHHHHHcCCHHHHHHHH-HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            999999999999999864  488999999999999 5577888888 699999999999999999999999999999987


Q ss_pred             CcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCch---hhcchhhhHHHHHHHhhcCCCHHHHHHHHHH
Q 021317          206 CRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE---KRLSSSVLEKIVYDIAARVDGADKAAETAKR  282 (314)
Q Consensus       206 ~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~---~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~  282 (314)
                      ++ +.++.+.+.|+++.|++++.++++.++..|+++|.+++.+.+.   .....|+++.++..+.   +++++.++.|..
T Consensus       159 ~~-~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~---~~~~~v~~~a~~  234 (252)
T 4hxt_A          159 PD-EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLT---STDSEVQKEAQR  234 (252)
T ss_dssp             CH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGG---CSCHHHHHHHHH
T ss_pred             CH-HHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHC---CCcHHHHHHHHH
Confidence            64 6678889999999999999999999999999999999986543   3556788888876664   556899999999


Q ss_pred             HHHHHHHHH
Q 021317          283 LLQDMVQRS  291 (314)
Q Consensus       283 ~L~~l~~~s  291 (314)
                      +|.++....
T Consensus       235 ~L~~l~~~~  243 (252)
T 4hxt_A          235 ALENIKSGG  243 (252)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHcCC
Confidence            999998654

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.96  E-value=4.8e-27  Score=224.39  Aligned_cols=273  Identities=15%  Similarity=0.119  Sum_probs=236.5

Q ss_pred             eeccccCCHHHHHHHHHHhH-hhccCc-hhHHHHHhcCCcHHHHHHhcCCC-HHHHHHHHHHHHHhccC-CCChhHHhhc
Q 021317           14 VFMETYFEGYARRLNLMGPL-WQLSKT-RNKVKIATAGAIPPLVELLKFQN-GTLRELAAAAILTLSAA-APNKPAIAAS   89 (314)
Q Consensus        14 v~~l~~~~~~~~~~a~~al~-l~~~~~-~~~~~l~~~g~v~~Lv~lL~~~~-~~~~~~a~~~L~~La~~-~~~~~~i~~~   89 (314)
                      +.+|.++++..|..|+++|. +++... .+...+++.|++|.|+++|.+++ +.++..|+++|.+++.. ++++..+.+.
T Consensus        80 v~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~  159 (528)
T 4b8j_A           80 IGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDH  159 (528)
T ss_dssp             HHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhC
Confidence            56788999999999999998 655544 77888999999999999999886 99999999999999996 5778888999


Q ss_pred             CcHHHHHHHhccCCHHHHHHHHHHHHHhcCC-CCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhh
Q 021317           90 GAAPLLVQILHSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRI  168 (314)
Q Consensus        90 g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~  168 (314)
                      |++|.|+.+|.++++.++..|+++|.||+.+ +.++..+.+.|++++|+.++..+. +..++..++++|++|+...+...
T Consensus       160 g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~-~~~v~~~a~~~L~~L~~~~~~~~  238 (528)
T 4b8j_A          160 GAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHT-KLSMLRNATWTLSNFCRGKPQPS  238 (528)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTC-CHHHHHHHHHHHHHHHCSSSCCC
T ss_pred             CcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCCCc
Confidence            9999999999999999999999999999955 567888889999999999995432 34888999999999999865555


Q ss_pred             HHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 021317          169 AITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDT  248 (314)
Q Consensus       169 ~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~  248 (314)
                      ... ..|+++.|+.++.++++.++..|+++|.+|+...+ ...+.+.+.|+++.|+.++.+.++.++..|+++|.+++.+
T Consensus       239 ~~~-~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~-~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~  316 (528)
T 4b8j_A          239 FEQ-TRPALPALARLIHSNDEEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTG  316 (528)
T ss_dssp             HHH-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCH-HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH-HHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcC
Confidence            555 48999999999999999999999999999998763 5567788899999999999999999999999999999986


Q ss_pred             Cch---hhcchhhhHHHHHHHhhcCCC-HHHHHHHHHHHHHHHHHHHH
Q 021317          249 PQE---KRLSSSVLEKIVYDIAARVDG-ADKAAETAKRLLQDMVQRSM  292 (314)
Q Consensus       249 ~~~---~~~~~~~~~~lv~~l~~~~~~-~~~~~~~A~~~L~~l~~~s~  292 (314)
                      ...   ..+..|+++.++..|.   ++ ++..++.|..+|.++...+.
T Consensus       317 ~~~~~~~~~~~~~l~~L~~lL~---~~~~~~v~~~A~~~L~nl~~~~~  361 (528)
T 4b8j_A          317 DDAQTQCIIDHQALPCLLSLLT---QNLKKSIKKEACWTISNITAGNK  361 (528)
T ss_dssp             CHHHHHHHHTTTHHHHHHHHHH---SCCCHHHHHHHHHHHHHHHTSCH
T ss_pred             CHHHHHHHHHhhhHHHHHHHHc---CCCcHHHHHHHHHHHHHHHCCCH
Confidence            643   4556888998887776   33 68899999999999996443

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.95  E-value=1.4e-26  Score=221.44  Aligned_cols=271  Identities=15%  Similarity=0.097  Sum_probs=237.3

Q ss_pred             eeccccC-CHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC-CChhHHhhcC
Q 021317           14 VFMETYF-EGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA-PNKPAIAASG   90 (314)
Q Consensus        14 v~~l~~~-~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~~~~~i~~~g   90 (314)
                      +.+|.++ ++.+|..|+++|. ++..+++++..+++.|+++.|+.+|.+++++++..|+++|++|+.+. .++..+...|
T Consensus       136 v~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~  215 (530)
T 1wa5_B          136 VEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCN  215 (530)
T ss_dssp             HHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcC
Confidence            5677786 8999999999999 77777888899999999999999999999999999999999999874 6788888999


Q ss_pred             cHHHHHHHhccCCHHHHHHHHHHHHHhcCCC-CCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCCh-hhhh
Q 021317           91 AAPLLVQILHSGSVQGRVDAVTALHYLSTCK-ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE-EGRI  168 (314)
Q Consensus        91 ~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~-~~~~  168 (314)
                      ++++|+.+|.++++.++..++++|.+|+... +........|+++.|+.++.+++  ..++..++++|.+|+... +...
T Consensus       216 ~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d--~~v~~~a~~~L~~L~~~~~~~~~  293 (530)
T 1wa5_B          216 AMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMD--TETLVDACWAISYLSDGPQEAIQ  293 (530)
T ss_dssp             CHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCC--HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             cHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCC--HHHHHHHHHHHHHHhCCCHHHHH
Confidence            9999999999999999999999999999765 56666667899999999998864  488899999999999874 4566


Q ss_pred             HHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 021317          169 AITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDT  248 (314)
Q Consensus       169 ~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~  248 (314)
                      .++ +.|+++.|+.+|.+.+..++..|+++|.+++..++ ...+.+.+.|+++.|+.++.++++.+++.|+++|.+++.+
T Consensus       294 ~~~-~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~  371 (530)
T 1wa5_B          294 AVI-DVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND-LQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG  371 (530)
T ss_dssp             HHH-HTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHH-hcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCH-HHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            666 68999999999999999999999999999998764 6677888899999999999999999999999999999976


Q ss_pred             Cch---hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Q 021317          249 PQE---KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRS  291 (314)
Q Consensus       249 ~~~---~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s  291 (314)
                      ...   ..+..++++.++..|.   +++++.+..|..+|.++....
T Consensus       372 ~~~~~~~~~~~~~l~~L~~lL~---~~~~~v~~~a~~aL~~l~~~~  414 (530)
T 1wa5_B          372 NTEQIQAVIDANLIPPLVKLLE---VAEYKTKKEACWAISNASSGG  414 (530)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHH---HSCHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHCCCHHHHHHHHh---cCCHHHHHHHHHHHHHHHhcC
Confidence            543   3445788888887775   345889999999999999753

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.95  E-value=2.8e-27  Score=204.50  Aligned_cols=234  Identities=21%  Similarity=0.253  Sum_probs=206.7

Q ss_pred             CCcHHHHHHhcCCCHHHHHHHHHHHHHhc-cCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcC-CCCCchh
Q 021317           49 GAIPPLVELLKFQNGTLRELAAAAILTLS-AAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLST-CKENSSP  126 (314)
Q Consensus        49 g~v~~Lv~lL~~~~~~~~~~a~~~L~~La-~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~~~~  126 (314)
                      ...+.++..|.+++++++..|+.+|.++. .+++++..+.+.|++|.|+++|.++++.++..|+++|.+++. +++++..
T Consensus        12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~   91 (252)
T 4db8_A           12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA   91 (252)
T ss_dssp             CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            45789999999999999999999997744 456778889999999999999999999999999999999996 6789999


Q ss_pred             hhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhh-hHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcc
Q 021317          127 ILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGR-IAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQS  205 (314)
Q Consensus       127 i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~-~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~  205 (314)
                      +.+.|+++.|+.+|++++  ..++..|+++|.||+.+.+.+ ..+. +.|+++.|+.+|.++++.+++.|+++|.+|+..
T Consensus        92 i~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~  168 (252)
T 4db8_A           92 VIDAGALPALVQLLSSPN--EQILQEALWALSNIASGGNEQIQAVI-DAGALPALVQLLSSPNEQILQEALWALSNIASG  168 (252)
T ss_dssp             HHHTTHHHHHHHGGGCSC--HHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHcCCHHHHHHHHcCCC--HHHHHHHHHHHHHhhcCCchHHHHHH-HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence            999999999999999864  488999999999999998888 6677 799999999999999999999999999999987


Q ss_pred             CcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCch---hhcchhhhHHHHHHHhhcCCCHHHHHHHHHH
Q 021317          206 CRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE---KRLSSSVLEKIVYDIAARVDGADKAAETAKR  282 (314)
Q Consensus       206 ~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~---~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~  282 (314)
                      ++ +.++.+.+.|+++.|++++.++++.+++.|+++|.+++.+.+.   ...+.|+++.++..+.   +++++.++.|..
T Consensus       169 ~~-~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~---~~~~~v~~~A~~  244 (252)
T 4db8_A          169 GN-EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS---HENEKIQKEAQE  244 (252)
T ss_dssp             CH-HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTT---CSSSHHHHTHHH
T ss_pred             Ch-HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhC---CCCHHHHHHHHH
Confidence            64 6788888999999999999999999999999999999976543   3456788887765554   556799999999


Q ss_pred             HHHHHHH
Q 021317          283 LLQDMVQ  289 (314)
Q Consensus       283 ~L~~l~~  289 (314)
                      +|.++.+
T Consensus       245 ~L~~l~~  251 (252)
T 4db8_A          245 ALEKLQS  251 (252)
T ss_dssp             HHHTTC-
T ss_pred             HHHHHhc
Confidence            9998864

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.95  E-value=1.4e-25  Score=209.24  Aligned_cols=269  Identities=16%  Similarity=0.111  Sum_probs=231.7

Q ss_pred             eeccccC-CHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC-CChhHHhhcC
Q 021317           14 VFMETYF-EGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA-PNKPAIAASG   90 (314)
Q Consensus        14 v~~l~~~-~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~~~~~i~~~g   90 (314)
                      +.+++++ ++.+|..|+++|. ++..++++...+.+.|++|.|+++|+++++++++.|+++|.+++.+. +++..+.+.|
T Consensus        70 ~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~  149 (450)
T 2jdq_A           70 VEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCN  149 (450)
T ss_dssp             HHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCC
Confidence            4567777 8999999999999 66667788888889999999999999999999999999999999875 5778888999


Q ss_pred             cHHHHHHHhcc-CCHHHHHHHHHHHHHhcCCC--CCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCCh-hh
Q 021317           91 AAPLLVQILHS-GSVQGRVDAVTALHYLSTCK--ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE-EG  166 (314)
Q Consensus        91 ~l~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~-~~  166 (314)
                      +++.|++++.+ .++.++..++++|.+|+...  ..+..++ .|+++.|+.++.+++  ..++..++++|.+++.+. +.
T Consensus       150 ~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~--~~v~~~a~~~L~~l~~~~~~~  226 (450)
T 2jdq_A          150 ILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSD--TDVLADACWALSYLSDGPNDK  226 (450)
T ss_dssp             CHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCC--HHHHHHHHHHHHHHTSSSHHH
T ss_pred             CHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCC--HHHHHHHHHHHHHHHCCCcHH
Confidence            99999999996 68999999999999999654  3344444 789999999998764  378899999999999874 55


Q ss_pred             hhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 021317          167 RIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLR  246 (314)
Q Consensus       167 ~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~  246 (314)
                      +..+. ..|+++.|+.++.+.++.++..|+++|.+++...+ ..++.+.+.|+++.|++++.+.++.+++.|+++|.+++
T Consensus       227 ~~~~~-~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~  304 (450)
T 2jdq_A          227 IQAVI-DAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDD-IQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNIT  304 (450)
T ss_dssp             HHHHH-HTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH-HHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHT
T ss_pred             HHHHH-HcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCCh-HHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            66666 68999999999999999999999999999998864 56677888999999999999999999999999999999


Q ss_pred             cCCch---hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Q 021317          247 DTPQE---KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR  290 (314)
Q Consensus       247 ~~~~~---~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~  290 (314)
                      .+...   .....++++.++..+.   +++++.+..|..+|.++...
T Consensus       305 ~~~~~~~~~~~~~~~l~~L~~~l~---~~~~~v~~~a~~~L~~l~~~  348 (450)
T 2jdq_A          305 AGNRAQIQTVIDANIFPALISILQ---TAEFRTRKEAAWAITNATSG  348 (450)
T ss_dssp             TSCHHHHHHHHHTTHHHHHHHHHH---HSCHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCHHHHHHHHh---cCCHHHHHHHHHHHHHHHcC
Confidence            76533   3445788888877776   44688999999999999976

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.95  E-value=1.9e-27  Score=202.37  Aligned_cols=196  Identities=19%  Similarity=0.179  Sum_probs=171.8

Q ss_pred             CCcHHHHHHhcCCCH--HHHHHHHHHHHHhcc-CCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcC-CCCCc
Q 021317           49 GAIPPLVELLKFQNG--TLRELAAAAILTLSA-AAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLST-CKENS  124 (314)
Q Consensus        49 g~v~~Lv~lL~~~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~~  124 (314)
                      -.+|.|+++|.++++  +++..|+.+|.+|+. +++++..|.+.|+||+|+++|+++++++++.|+++|+||+. +++|+
T Consensus         8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk   87 (233)
T 3tt9_A            8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK   87 (233)
T ss_dssp             CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence            357999999999887  899999999999997 56789999999999999999999999999999999999996 57899


Q ss_pred             hhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhh---c-------------CC
Q 021317          125 SPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVE---D-------------GS  188 (314)
Q Consensus       125 ~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~---~-------------~~  188 (314)
                      ..|++.|+||+|+++|.++. +..+++.++++||||+..+++|..++ + ++++.|+.++.   +             .+
T Consensus        88 ~~I~~~GaI~~Lv~lL~~~~-~~~~~e~a~~aL~nLS~~~~~k~~i~-~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~  164 (233)
T 3tt9_A           88 LEVAELNGVPRLLQVLKQTR-DLETKKQITGLLWNLSSNDKLKNLMI-T-EALLTLTENIIIPFSGWPEGDYPKANGLLD  164 (233)
T ss_dssp             HHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTSGGGHHHHH-H-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred             HHHHHcCCHHHHHHHHccCC-CHHHHHHHHHHHHHHHcChhhHHHHH-h-ccHHHHHHHHhccccCCcccccccccccch
Confidence            99999999999999998532 23788999999999999999999998 4 46999988662   1             24


Q ss_pred             HHHHHHHHHHHHHhhccCcHHHHHHHHH-cCChHHHHHhhhcC------CHHHHHHHHHHHHHhhcC
Q 021317          189 LVSTQHAVGALLSLCQSCRDKYRQLILK-EGAIPGLLRLTVEG------TFEAQERARTLLDLLRDT  248 (314)
Q Consensus       189 ~~~~~~A~~~L~~L~~~~~~~~~~~i~~-~g~v~~Lv~ll~~~------~~~~~~~A~~~L~~l~~~  248 (314)
                      ..++++|.++|+||+..++ ++|+.|++ .|+|+.|+.+++.+      +...+|+|+.+|+||+..
T Consensus       165 ~~v~~na~~~L~nLss~~~-~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          165 FDIFYNVTGCLRNMSSAGA-DGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHHHTTSCH-HHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHhcCCH-HHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            6899999999999998763 78999998 56789999998863      568999999999999864

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.95  E-value=2.1e-25  Score=213.28  Aligned_cols=273  Identities=14%  Similarity=0.133  Sum_probs=235.2

Q ss_pred             eeccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC-CChhHHhhcCc
Q 021317           14 VFMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA-PNKPAIAASGA   91 (314)
Q Consensus        14 v~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~~~~~i~~~g~   91 (314)
                      +.++.++++.+++.|+++|. ++..++.++..+.+.|+++.|+.++.+++++++..|+++|.+|+.+. .........|+
T Consensus       179 v~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~  258 (530)
T 1wa5_B          179 IQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQA  258 (530)
T ss_dssp             HHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGG
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhH
Confidence            56778899999999999999 66667889999999999999999999999999999999999999875 55566667899


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHhcCCC-CCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCCh-hhhhH
Q 021317           92 APLLVQILHSGSVQGRVDAVTALHYLSTCK-ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE-EGRIA  169 (314)
Q Consensus        92 l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~-~~~~~  169 (314)
                      +|.|+.+|.++++.++..++++|.+|+... +....+.+.|+++.|+.+|.+.+  ..++..|+.+|.+++... .....
T Consensus       259 l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~--~~v~~~a~~~L~~l~~~~~~~~~~  336 (530)
T 1wa5_B          259 LPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES--TLVQTPALRAVGNIVTGNDLQTQV  336 (530)
T ss_dssp             HHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSC--HHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCC--hhhHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999999999999999999999654 56677888999999999998754  488899999999999774 44555


Q ss_pred             HHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCC
Q 021317          170 ITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP  249 (314)
Q Consensus       170 i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~  249 (314)
                      +. +.|+++.|+.+|.+++..++..|+++|.+++..++ +..+.+++.|+++.|+.++.++++.++..|+++|.+++.+.
T Consensus       337 ~~-~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~  414 (530)
T 1wa5_B          337 VI-NAGVLPALRLLLSSPKENIKKEACWTISNITAGNT-EQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGG  414 (530)
T ss_dssp             HH-HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred             HH-HcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence            66 68999999999999999999999999999998764 56777889999999999999999999999999999998643


Q ss_pred             -c--h---hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 021317          250 -Q--E---KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSME  293 (314)
Q Consensus       250 -~--~---~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~~  293 (314)
                       +  +   .....|+++.++..+.   +.+++.++.|..+|.++......
T Consensus       415 ~~~~~~~~~l~~~~~l~~L~~ll~---~~~~~v~~~al~aL~~l~~~~~~  461 (530)
T 1wa5_B          415 LQRPDIIRYLVSQGCIKPLCDLLE---IADNRIIEVTLDALENILKMGEA  461 (530)
T ss_dssp             TTCTHHHHHHHHTTCHHHHHHHTT---TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHCCCHHHHHHHHh---CCCHHHHHHHHHHHHHHHHhhhh
Confidence             2  1   3445778888876665   44688999999999999976544

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.94  E-value=3.5e-25  Score=206.54  Aligned_cols=272  Identities=15%  Similarity=0.139  Sum_probs=232.0

Q ss_pred             eeccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcC-CCHHHHHHHHHHHHHhccCC--CChhHHhhc
Q 021317           14 VFMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKF-QNGTLRELAAAAILTLSAAA--PNKPAIAAS   89 (314)
Q Consensus        14 v~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~La~~~--~~~~~i~~~   89 (314)
                      +.+++++++.+|+.|+++|. ++..+++++..+.+.|+++.|+.++.+ ++++++..++++|.+++...  ..+..+. .
T Consensus       113 ~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~  191 (450)
T 2jdq_A          113 IELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-S  191 (450)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-G
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-H
Confidence            56788899999999999999 666777899999999999999999985 68999999999999999764  3333333 8


Q ss_pred             CcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC-CCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhh-
Q 021317           90 GAAPLLVQILHSGSVQGRVDAVTALHYLSTCK-ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGR-  167 (314)
Q Consensus        90 g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~-  167 (314)
                      +++|.|++++.++++.++..++++|.+|+... +++..+.+.|+++.|+.++.+.+  ..++..++.+|.+++.+.+.. 
T Consensus       192 ~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~--~~v~~~a~~~L~~l~~~~~~~~  269 (450)
T 2jdq_A          192 PCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHND--YKVVSPALRAVGNIVTGDDIQT  269 (450)
T ss_dssp             GGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSC--HHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCc--hhHHHHHHHHHHHHhhCChHHH
Confidence            99999999999999999999999999999754 56677788999999999998754  488999999999999886554 


Q ss_pred             hHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 021317          168 IAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRD  247 (314)
Q Consensus       168 ~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~  247 (314)
                      ..+. +.|+++.|+.++.++++.++..|+++|.+++.+++ +..+.+.+.|+++.|++++.++++.++..|+++|.+++.
T Consensus       270 ~~~~-~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~  347 (450)
T 2jdq_A          270 QVIL-NCSALQSLLHLLSSPKESIKKEACWTISNITAGNR-AQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATS  347 (450)
T ss_dssp             HHHH-TTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHH-HCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHc
Confidence            4455 68999999999999999999999999999998764 667788889999999999999999999999999999986


Q ss_pred             C-Cch---hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 021317          248 T-PQE---KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSME  293 (314)
Q Consensus       248 ~-~~~---~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~~  293 (314)
                      + .++   .....++++.++..+.   +++++.++.|..+|.++......
T Consensus       348 ~~~~~~~~~l~~~~~i~~L~~ll~---~~~~~v~~~a~~aL~~l~~~~~~  394 (450)
T 2jdq_A          348 GGSAEQIKYLVELGCIKPLCDLLT---VMDSKIVQVALNGLENILRLGEQ  394 (450)
T ss_dssp             HCCHHHHHHHHHHTCHHHHHHGGG---SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHCCCHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhchh
Confidence            4 322   2445788888877665   44688999999999999976543

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.94  E-value=5.1e-26  Score=216.61  Aligned_cols=270  Identities=17%  Similarity=0.145  Sum_probs=232.8

Q ss_pred             eeccccCCHHHHHHHHHHhHhhccCchhHHHHHh-cCCcHHHHHHhcCC-CHHHHHHHHHHHHHhccCCCChhHHhhcCc
Q 021317           14 VFMETYFEGYARRLNLMGPLWQLSKTRNKVKIAT-AGAIPPLVELLKFQ-NGTLRELAAAAILTLSAAAPNKPAIAASGA   91 (314)
Q Consensus        14 v~~l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~-~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~La~~~~~~~~i~~~g~   91 (314)
                      +.+++++++.+|+.|+.+|...+.+++++..+.. .|+++.|+++|.++ +++++..++.+|.+|+.+++++..+.+.|+
T Consensus        23 v~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~  102 (529)
T 1jdh_A           23 TKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGG  102 (529)
T ss_dssp             HHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHHcCC
Confidence            5678899999999999999966666778877775 48999999999754 899999999999999999889999999999


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHhcCC-CCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCC-hhhhhH
Q 021317           92 APLLVQILHSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRIA  169 (314)
Q Consensus        92 l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~  169 (314)
                      +|.|+++|.++++.++..++++|.||+.+ ++.+..+.+.|+++.|++++.+++  .++...+..+|.+++.. ++++..
T Consensus       103 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~--~~~~~~~~~~L~~la~~~~~~~~~  180 (529)
T 1jdh_A          103 IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN--VKFLAITTDCLQILAYGNQESKLI  180 (529)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCC--HHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCC--HHHHHHHHHHHHHHHhCCHHHHHH
Confidence            99999999999999999999999999966 556777888999999999999864  37788888999999975 678888


Q ss_pred             HHhccCCHHHHHHHhhcCC-HHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 021317          170 ITNSDGGILTLVETVEDGS-LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDT  248 (314)
Q Consensus       170 i~~~~g~v~~Lv~ll~~~~-~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~  248 (314)
                      +. +.|+++.|+.++++++ ...++.++.+|++++...  +++..+.+.|+++.|++++.++++.+++.++++|.+|+.+
T Consensus       181 i~-~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~  257 (529)
T 1jdh_A          181 IL-ASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS--SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA  257 (529)
T ss_dssp             HH-HTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTST--THHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTT
T ss_pred             HH-HCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCc--ccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcC
Confidence            88 6899999999998765 566778899999999765  5699999999999999999999999999999999999987


Q ss_pred             CchhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Q 021317          249 PQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRS  291 (314)
Q Consensus       249 ~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s  291 (314)
                      ........++++.++..+.   +.+++.++.|..+|.++...+
T Consensus       258 ~~~~~~~~~~i~~L~~ll~---~~~~~v~~~a~~~L~~L~~~~  297 (529)
T 1jdh_A          258 ATKQEGMEGLLGTLVQLLG---SDDINVVTCAAGILSNLTCNN  297 (529)
T ss_dssp             CTTCSCCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHHTTTC
T ss_pred             ChhhHHHHhHHHHHHHHHc---CCCHHHHHHHHHHHHHHhcCC
Confidence            6543334577777766654   456889999999999998654

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.94  E-value=5.1e-26  Score=191.30  Aligned_cols=198  Identities=23%  Similarity=0.287  Sum_probs=178.0

Q ss_pred             hcCCcHHHHHHhcCCCHHHHHHHHHHHHHhcc-CCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhc-CCCCCc
Q 021317           47 TAGAIPPLVELLKFQNGTLRELAAAAILTLSA-AAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLS-TCKENS  124 (314)
Q Consensus        47 ~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~-~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs-~~~~~~  124 (314)
                      ..|+.+.|+.+|.+++++++..|+++|.+++. +++++..+.+.|+++.|+++|+++++.++..|+++|.||+ .+++++
T Consensus        10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~   89 (210)
T 4db6_A           10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI   89 (210)
T ss_dssp             ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence            46888999999999999999999999999996 4577888999999999999999999999999999999999 566788


Q ss_pred             hhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCC-hhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 021317          125 SPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLC  203 (314)
Q Consensus       125 ~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~  203 (314)
                      ..+++.|+++.|+.+|++++  ..++..|+++|+|++.+ ++.+..+. +.|+++.|+.++.+++..+++.|+++|.|++
T Consensus        90 ~~i~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~  166 (210)
T 4db6_A           90 QAVIDAGALPALVQLLSSPN--EQILQEALWALSNIASGGNEQIQAVI-DAGALPALVQLLSSPNEQILQEALWALSNIA  166 (210)
T ss_dssp             HHHHHTTCHHHHHHHTTCSC--HHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHcCCc--HHHHHHHHHHHHHHHcCCHHHHHHHH-HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999875  48899999999999976 45556676 7999999999999999999999999999999


Q ss_pred             ccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 021317          204 QSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDT  248 (314)
Q Consensus       204 ~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~  248 (314)
                      ..++ +.+..+.+.|+++.|++++.++++.+++.|.++|.+|+.+
T Consensus       167 ~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  210 (210)
T 4db6_A          167 SGGN-EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH  210 (210)
T ss_dssp             TSCH-HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred             cCCc-HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence            8764 6788899999999999999999999999999999999763

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.94  E-value=5e-27  Score=199.75  Aligned_cols=191  Identities=21%  Similarity=0.171  Sum_probs=169.0

Q ss_pred             eeccccCCH--HHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhcc-CCCChhHHhhc
Q 021317           14 VFMETYFEG--YARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSA-AAPNKPAIAAS   89 (314)
Q Consensus        14 v~~l~~~~~--~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~-~~~~~~~i~~~   89 (314)
                      |.+|+++++  +.|..|+.++. ++.+++++|..+++.|+||+|+++|+++++++++.|+++|.||+. ++++|..|.+.
T Consensus        14 V~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~   93 (233)
T 3tt9_A           14 VSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAEL   93 (233)
T ss_dssp             HHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHc
Confidence            678899988  88999999999 777899999999999999999999999999999999999999998 46899999999


Q ss_pred             CcHHHHHHHhc-cCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhh---ccC-----------CchHHHHHHH
Q 021317           90 GAAPLLVQILH-SGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLK---DCK-----------KYSKFAEKAT  154 (314)
Q Consensus        90 g~l~~Lv~lL~-~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~---~~~-----------~~~~~~~~a~  154 (314)
                      |+||+|+++|+ +++.+++++++.+|+||+..+++|..|++. ++++|++++.   ++.           .+..++++|+
T Consensus        94 GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~  172 (233)
T 3tt9_A           94 NGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVT  172 (233)
T ss_dssp             THHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHH
T ss_pred             CCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHHHHHHHH
Confidence            99999999998 479999999999999999999999999875 6999998763   111           2458899999


Q ss_pred             HHHHHhcCC-hhhhhHHHhccCCHHHHHHHhhcC------CHHHHHHHHHHHHHhhcc
Q 021317          155 ALLEILSSS-EEGRIAITNSDGGILTLVETVEDG------SLVSTQHAVGALLSLCQS  205 (314)
Q Consensus       155 ~~L~~L~~~-~~~~~~i~~~~g~v~~Lv~ll~~~------~~~~~~~A~~~L~~L~~~  205 (314)
                      ++|.||+.. +++|+.+....|.|+.|+.+++.+      +.+.+|+|+.+|+||+..
T Consensus       173 ~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          173 GCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            999999885 689999985567899999999752      467899999999999964

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.94  E-value=1.2e-25  Score=219.94  Aligned_cols=271  Identities=17%  Similarity=0.144  Sum_probs=233.5

Q ss_pred             eeccccCCHHHHHHHHHHhHhhccCchhHHHHHh-cCCcHHHHHHhcCC-CHHHHHHHHHHHHHhccCCCChhHHhhcCc
Q 021317           14 VFMETYFEGYARRLNLMGPLWQLSKTRNKVKIAT-AGAIPPLVELLKFQ-NGTLRELAAAAILTLSAAAPNKPAIAASGA   91 (314)
Q Consensus        14 v~~l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~-~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~La~~~~~~~~i~~~g~   91 (314)
                      +.+|+++++.+|+.|+.+|...+.++.++..+.. .|+++.|+++|.++ +++++..|+.+|.+|+.+++++..+.+.|+
T Consensus        20 v~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~   99 (644)
T 2z6h_A           20 TKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGG   99 (644)
T ss_dssp             HHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCC
Confidence            5778899999999999999955556677777775 48999999999865 899999999999999999889999999999


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHhcCC-CCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcC-ChhhhhH
Q 021317           92 APLLVQILHSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSS-SEEGRIA  169 (314)
Q Consensus        92 l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~-~~~~~~~  169 (314)
                      ++.|+++|.++++.++..|+++|.||+.. ++.+..+.+.|+++.|+++|++++.  ++...++.+|.+|+. +++++..
T Consensus       100 i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~--~~~~~a~~~L~~La~~~~~~~~~  177 (644)
T 2z6h_A          100 IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV--KFLAITTDCLQILAYGNQESKLI  177 (644)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCH--HHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCH--HHHHHHHHHHHHHHhcCcHHHHH
Confidence            99999999999999999999999999965 4566677789999999999998743  777778889999996 6788888


Q ss_pred             HHhccCCHHHHHHHhhcCC-HHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 021317          170 ITNSDGGILTLVETVEDGS-LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDT  248 (314)
Q Consensus       170 i~~~~g~v~~Lv~ll~~~~-~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~  248 (314)
                      +. +.|+++.|+.++++.+ ..+++.++.+|++|+...  +++..+++.|+++.|++++.++++.+++.++++|.+|+.+
T Consensus       178 i~-~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~--~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~  254 (644)
T 2z6h_A          178 IL-ASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS--SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA  254 (644)
T ss_dssp             HH-HTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCT--THHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGG
T ss_pred             HH-HcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCc--ccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence            88 6899999999998765 677899999999999765  5699999999999999999999999999999999999986


Q ss_pred             CchhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHH
Q 021317          249 PQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSM  292 (314)
Q Consensus       249 ~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~  292 (314)
                      ........++++.++..+.   +.+++.++.|..+|.++...+.
T Consensus       255 ~~~~~~~~~~i~~Lv~lL~---~~d~~v~~~a~~aL~~L~~~~~  295 (644)
T 2z6h_A          255 ATKQEGMEGLLGTLVQLLG---SDDINVVTCAAGILSNLTCNNY  295 (644)
T ss_dssp             CTTCCSCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHHHTTCH
T ss_pred             chhhhhhhhHHHHHHHHHc---CCCHHHHHHHHHHHHHHHcCCH
Confidence            6443334567777766654   4568899999999999986543

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.94  E-value=4.9e-26  Score=216.74  Aligned_cols=271  Identities=19%  Similarity=0.177  Sum_probs=233.4

Q ss_pred             eecccc-CCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC-CChhHHhhcCc
Q 021317           14 VFMETY-FEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA-PNKPAIAASGA   91 (314)
Q Consensus        14 v~~l~~-~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~~~~~i~~~g~   91 (314)
                      +.+|.+ ++++.+..++.+|...+.+++++..+.+.|++|.|+++|.+++++++..|+.+|.+|+.++ ..+..+.+.|+
T Consensus        65 v~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~  144 (529)
T 1jdh_A           65 VRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGG  144 (529)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCC
Confidence            344554 4899999999999966667789999999999999999999999999999999999999974 56777889999


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHhcC-CCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHH
Q 021317           92 APLLVQILHSGSVQGRVDAVTALHYLST-CKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAI  170 (314)
Q Consensus        92 l~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i  170 (314)
                      +|.|+++|.+++++++..++.+|.+++. +++++..+.+.|+++.|+.++++++. ......+..+|++|+.+++++..+
T Consensus       145 i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~-~~~~~~a~~~L~~l~~~~~~~~~~  223 (529)
T 1jdh_A          145 LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY-EKLLWTTSRVLKVLSVCSSNKPAI  223 (529)
T ss_dssp             HHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCC-HHHHHHHHHHHHHHTTSTTHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCCh-HHHHHHHHHHHHHHhcCcccHHHH
Confidence            9999999999999999999999999996 56788999999999999999998754 467788999999999999999999


Q ss_pred             HhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCc
Q 021317          171 TNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQ  250 (314)
Q Consensus       171 ~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~  250 (314)
                      + +.|+++.|+.++.++++.+++.++++|.+|+...+.  ..  ...|+++.|++++.++++.+++.|+++|.+|+.+.+
T Consensus       224 ~-~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~--~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~  298 (529)
T 1jdh_A          224 V-EAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK--QE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY  298 (529)
T ss_dssp             H-HTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTT--CS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCH
T ss_pred             H-HCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChh--hH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH
Confidence            8 699999999999999999999999999999987532  11  124789999999999999999999999999998763


Q ss_pred             h---hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Q 021317          251 E---KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRS  291 (314)
Q Consensus       251 ~---~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s  291 (314)
                      +   ...+.|+++.++..+....+ .+..++.|..+|+++...+
T Consensus       299 ~~~~~~~~~~~v~~L~~ll~~~~~-~~~v~~~a~~~L~nl~~~~  341 (529)
T 1jdh_A          299 KNKMMVCQVGGIEALVRTVLRAGD-REDITEPAICALRHLTSRH  341 (529)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTSSS
T ss_pred             HHHHHHHHcCChHHHHHHHHccCC-HHHHHHHHHHHHHHHHcCC
Confidence            2   45567889988887763222 3688999999999998653

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.93  E-value=7.7e-25  Score=214.20  Aligned_cols=272  Identities=19%  Similarity=0.165  Sum_probs=227.2

Q ss_pred             eecccc-CCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC-CChhHHhhcCc
Q 021317           14 VFMETY-FEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA-PNKPAIAASGA   91 (314)
Q Consensus        14 v~~l~~-~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~~~~~i~~~g~   91 (314)
                      +..|.+ ++++++..|+.+|..++.+++++..+.+.|+++.|+++|.++++.++..|+.+|.||+..+ ..+..+.+.|+
T Consensus        62 v~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~  141 (644)
T 2z6h_A           62 VRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGG  141 (644)
T ss_dssp             HHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCC
Confidence            445555 4899999999999966666789999999999999999999999999999999999999874 56777889999


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHhcC-CCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHH
Q 021317           92 APLLVQILHSGSVQGRVDAVTALHYLST-CKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAI  170 (314)
Q Consensus        92 l~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i  170 (314)
                      +|.|+++|.++++.++..++.+|.+|+. +++++..+.+.|+++.|+.+++++.. ..++..++.+|+||+.+++++..+
T Consensus       142 i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~-~~~~~~a~~~L~nLs~~~~~~~~l  220 (644)
T 2z6h_A          142 LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY-EKLLWTTSRVLKVLSVCSSNKPAI  220 (644)
T ss_dssp             HHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCC-HHHHHHHHHHHHHHTTCTTHHHHH
T ss_pred             hHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCCh-HHHHHHHHHHHHHHhcCcccHHHH
Confidence            9999999999999999999999999995 77899999999999999999998653 477788999999999999999988


Q ss_pred             HhccCCHHHHHHHh---------------------------------------hcCCHHHHHHHHHHHHHhhccCcHHHH
Q 021317          171 TNSDGGILTLVETV---------------------------------------EDGSLVSTQHAVGALLSLCQSCRDKYR  211 (314)
Q Consensus       171 ~~~~g~v~~Lv~ll---------------------------------------~~~~~~~~~~A~~~L~~L~~~~~~~~~  211 (314)
                      + +.|+++.|+.++                                       .++++.+++.|+++|.+|+..++ +.+
T Consensus       221 ~-~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~-~~~  298 (644)
T 2z6h_A          221 V-EAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY-KNK  298 (644)
T ss_dssp             H-HTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH-HHH
T ss_pred             H-HCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH-HHH
Confidence            8 677777666554                                       44567778888888888887653 678


Q ss_pred             HHHHHcCChHHHHHhhhcC-C-HHHHHHHHHHHHHhhcCCch------hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHH
Q 021317          212 QLILKEGAIPGLLRLTVEG-T-FEAQERARTLLDLLRDTPQE------KRLSSSVLEKIVYDIAARVDGADKAAETAKRL  283 (314)
Q Consensus       212 ~~i~~~g~v~~Lv~ll~~~-~-~~~~~~A~~~L~~l~~~~~~------~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~  283 (314)
                      +.+.+.|+++.|++++.+. + +.+++.|+++|.+|+.+...      .++..++++.++..|.  ...++..++.|..+
T Consensus       299 ~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~--~~~~~~v~~~a~~~  376 (644)
T 2z6h_A          299 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLH--PPSHWPLIKATVGL  376 (644)
T ss_dssp             HHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTS--TTCCHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhC--ccCchHHHHHHHHH
Confidence            8899999999999998863 3 79999999999999865321      2445678887776665  22236889999999


Q ss_pred             HHHHHHH
Q 021317          284 LQDMVQR  290 (314)
Q Consensus       284 L~~l~~~  290 (314)
                      |.++...
T Consensus       377 L~nLa~~  383 (644)
T 2z6h_A          377 IRNLALC  383 (644)
T ss_dssp             HHHHTTS
T ss_pred             HHHHccC
Confidence            9999864

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.92  E-value=8e-25  Score=183.94  Aligned_cols=191  Identities=24%  Similarity=0.231  Sum_probs=173.6

Q ss_pred             cceeeccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhcc-CCCChhHHhh
Q 021317           11 GVEVFMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSA-AAPNKPAIAA   88 (314)
Q Consensus        11 ~~~v~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~-~~~~~~~i~~   88 (314)
                      ...+.+++++++.+|..|+++|. ++..+++++..+.+.|++|.|+++|.+++++++..|+++|.|++. +++++..+.+
T Consensus        15 ~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~   94 (210)
T 4db6_A           15 PQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID   94 (210)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence            45568899999999999999999 666889999999999999999999999999999999999999996 4577888999


Q ss_pred             cCcHHHHHHHhccCCHHHHHHHHHHHHHhcC-CCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCC-hhh
Q 021317           89 SGAAPLLVQILHSGSVQGRVDAVTALHYLST-CKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEG  166 (314)
Q Consensus        89 ~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~-~~~  166 (314)
                      .|+++.|+++|+++++.++..|+++|.||+. +++.+..+.+.|+++.|++++++++  ..++..|+++|+|++.+ ++.
T Consensus        95 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~--~~v~~~a~~aL~~l~~~~~~~  172 (210)
T 4db6_A           95 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN--EQILQEALWALSNIASGGNEQ  172 (210)
T ss_dssp             TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC--HHHHHHHHHHHHHHHTSCHHH
T ss_pred             CCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCC--HHHHHHHHHHHHHHHcCCcHH
Confidence            9999999999999999999999999999995 4556677889999999999999864  38899999999999988 667


Q ss_pred             hhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 021317          167 RIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQ  204 (314)
Q Consensus       167 ~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~  204 (314)
                      +..+. +.|+++.|+.++.++++.+++.|+++|.+|+.
T Consensus       173 ~~~~~-~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          173 KQAVK-EAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHHHH-HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             HHHHH-HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            77777 79999999999999999999999999999985

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.92  E-value=3.1e-24  Score=213.94  Aligned_cols=270  Identities=17%  Similarity=0.146  Sum_probs=231.0

Q ss_pred             eeccccCCHHHHHHHHHHhHhhccCchhHHHHHh-cCCcHHHHHHhcCC-CHHHHHHHHHHHHHhccCCCChhHHhhcCc
Q 021317           14 VFMETYFEGYARRLNLMGPLWQLSKTRNKVKIAT-AGAIPPLVELLKFQ-NGTLRELAAAAILTLSAAAPNKPAIAASGA   91 (314)
Q Consensus        14 v~~l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~-~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~La~~~~~~~~i~~~g~   91 (314)
                      +.+|.++++.+|+.|+.+|...+.++.++..+.+ .|+++.|+++|.++ +++++..|+.+|.+|+.+++++..+.+.|+
T Consensus       156 v~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~  235 (780)
T 2z6g_A          156 TKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGG  235 (780)
T ss_dssp             HHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTH
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCC
Confidence            4567788999999999999966666778887775 48999999999755 899999999999999998888999999999


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHhcCC-CCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCC-hhhhhH
Q 021317           92 APLLVQILHSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRIA  169 (314)
Q Consensus        92 l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~  169 (314)
                      ++.|+++|.++++.++..|+++|.||+.. ++.+..+.+.|+++.|+.+|.+.+  .++...++.+|.+++.. .+++..
T Consensus       236 I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~--~~v~~~a~~aL~~La~~~~e~~~~  313 (780)
T 2z6g_A          236 IPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN--VKFLAITTDCLQILAYGNQESKLI  313 (780)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCC--HHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCC--HHHHHHHHHHHHHHhcCChHHHHH
Confidence            99999999999999999999999999965 456666778999999999999854  37788899999999964 788888


Q ss_pred             HHhccCCHHHHHHHhhcCC-HHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 021317          170 ITNSDGGILTLVETVEDGS-LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDT  248 (314)
Q Consensus       170 i~~~~g~v~~Lv~ll~~~~-~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~  248 (314)
                      ++ +.|+++.|+.++++++ ...++.++.+|++|+...  +.+..+++.|+++.|+.++.++++.+++.|+++|.+|+..
T Consensus       314 i~-~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~--~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~  390 (780)
T 2z6g_A          314 IL-ASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS--SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA  390 (780)
T ss_dssp             HH-TTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTST--THHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTT
T ss_pred             HH-HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCh--HHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhcc
Confidence            88 6899999999998765 456678999999999765  5689999999999999999999999999999999999987


Q ss_pred             CchhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Q 021317          249 PQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRS  291 (314)
Q Consensus       249 ~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s  291 (314)
                      ........++++.++..|.   +.+++.++.|..+|.++...+
T Consensus       391 ~~~~~~~~~~i~~Lv~lL~---~~d~~vr~~A~~aL~~L~~~~  430 (780)
T 2z6g_A          391 ATKQEGMEGLLGTLVQLLG---SDDINVVTCAAGILSNLTCNN  430 (780)
T ss_dssp             CTTCSCCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHHTSSC
T ss_pred             chhhhhhhhHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhCC
Confidence            6543334667777766654   456889999999999998654

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.92  E-value=1.2e-23  Score=209.65  Aligned_cols=273  Identities=19%  Similarity=0.167  Sum_probs=225.1

Q ss_pred             eeccccC-CHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC-CChhHHhhcCc
Q 021317           14 VFMETYF-EGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA-PNKPAIAASGA   91 (314)
Q Consensus        14 v~~l~~~-~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~~~~~i~~~g~   91 (314)
                      +..|.++ ++++++.|+.+|..++.+++++..+.+.|+++.|+++|+++++.++..|+.+|.||+... ..+..+.+.|+
T Consensus       198 v~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~  277 (780)
T 2z6g_A          198 VRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGG  277 (780)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCC
Confidence            3455544 899999999999966667888999999999999999999999999999999999999975 55667778999


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHhcC-CCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHH
Q 021317           92 APLLVQILHSGSVQGRVDAVTALHYLST-CKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAI  170 (314)
Q Consensus        92 l~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i  170 (314)
                      ++.|+++|.+++..++..++.+|.+|+. +++++..+++.|+++.|+.++++++. ....+.+..+|++|+.+.+++..+
T Consensus       278 v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~-~~~~~~a~~aL~~Ls~~~~~~~~i  356 (780)
T 2z6g_A          278 LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY-EKLLWTTSRVLKVLSVCSSNKPAI  356 (780)
T ss_dssp             HHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCC-HHHHHHHHHHHHHHHTSTTHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCH-HHHHHHHHHHHHHhhcChHHHHHH
Confidence            9999999999999999999999999995 57889999999999999999998754 356678899999999988888887


Q ss_pred             HhccCCHHHHHH---------------------------------------HhhcCCHHHHHHHHHHHHHhhccCcHHHH
Q 021317          171 TNSDGGILTLVE---------------------------------------TVEDGSLVSTQHAVGALLSLCQSCRDKYR  211 (314)
Q Consensus       171 ~~~~g~v~~Lv~---------------------------------------ll~~~~~~~~~~A~~~L~~L~~~~~~~~~  211 (314)
                      + +.|+++.|+.                                       +|.+.+..+++.|+++|.+|+..++ +.+
T Consensus       357 ~-~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~-~~~  434 (780)
T 2z6g_A          357 V-EAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY-KNK  434 (780)
T ss_dssp             H-HTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCH-HHH
T ss_pred             H-HhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH-HHH
Confidence            7 5666655554                                       4445567788889999999988763 678


Q ss_pred             HHHHHcCChHHHHHhhhc-CC-HHHHHHHHHHHHHhhcCCch------hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHH
Q 021317          212 QLILKEGAIPGLLRLTVE-GT-FEAQERARTLLDLLRDTPQE------KRLSSSVLEKIVYDIAARVDGADKAAETAKRL  283 (314)
Q Consensus       212 ~~i~~~g~v~~Lv~ll~~-~~-~~~~~~A~~~L~~l~~~~~~------~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~  283 (314)
                      ..+.+.|+++.|++++.+ ++ +.+++.|+++|.+|+....+      .+...++++.++..|.  ....+..++.|..+
T Consensus       435 ~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~--~~~~~~v~~~A~~a  512 (780)
T 2z6g_A          435 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLH--PPSHWPLIKATVGL  512 (780)
T ss_dssp             HHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTS--TTCCHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhc--CCChHHHHHHHHHH
Confidence            888999999999998876 33 49999999999999865422      3445778887776665  22335889999999


Q ss_pred             HHHHHHHH
Q 021317          284 LQDMVQRS  291 (314)
Q Consensus       284 L~~l~~~s  291 (314)
                      |.++...+
T Consensus       513 L~nLa~~~  520 (780)
T 2z6g_A          513 IRNLALCP  520 (780)
T ss_dssp             HHHHHSSH
T ss_pred             HHHHhcCH
Confidence            99999643

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.90  E-value=5.3e-23  Score=181.86  Aligned_cols=221  Identities=17%  Similarity=0.111  Sum_probs=180.6

Q ss_pred             HHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHH-HhccCCHHHHHHHHHHHHHhcCC-CCCchhhhhcCCcHHHHHHhh
Q 021317           64 TLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQ-ILHSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLK  141 (314)
Q Consensus        64 ~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~-lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~lL~  141 (314)
                      +-+..|+..|.++..+.++...+.+.|++|+|+. +|.++++.++..|+++|.|++.+ +..+..+++.|++++|+.+|+
T Consensus        55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~  134 (296)
T 1xqr_A           55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD  134 (296)
T ss_dssp             HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHc
Confidence            5677888999999988889999999999999999 99999999999999999999965 567888999999999999999


Q ss_pred             ccCCchHHHHHHHHHHHHhcCCh-hhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCCh
Q 021317          142 DCKKYSKFAEKATALLEILSSSE-EGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAI  220 (314)
Q Consensus       142 ~~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v  220 (314)
                      ++. ...++..|+++|+|++.+. +....+. +.|+++.|+.+|++++..++..|+++|.+|+..++ +.++.+++.|++
T Consensus       135 ~~~-~~~v~~~A~~ALsnl~~~~~~~~~~~~-~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~-~~~~~vv~~g~i  211 (296)
T 1xqr_A          135 RDA-CDTVRVKALFAISCLVREQEAGLLQFL-RLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHP-EHKGTLCSMGMV  211 (296)
T ss_dssp             HCS-CHHHHHHHHHHHHHHHTTCHHHHHHHH-HTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHTTHH
T ss_pred             cCC-CHHHHHHHHHHHHHHHcCCcHHHHHHH-HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCh-HHHHHHHHcCCH
Confidence            742 3478999999999999874 5566777 68999999999999999999999999999998764 678999999999


Q ss_pred             HHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcchh--------hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 021317          221 PGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSS--------VLEKIVYDIAARVDGADKAAETAKRLLQDMV  288 (314)
Q Consensus       221 ~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~--------~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~  288 (314)
                      +.|+.++.+.++.+++.|+.+|.+|....+......+        .++.....+.. .+...+..++|..++.++-
T Consensus       212 ~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~-~e~~~e~~~~~~~il~~~f  286 (296)
T 1xqr_A          212 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQ-HEEYQEELEFCEKLLQTCF  286 (296)
T ss_dssp             HHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTT-CGGGHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccc-hHHHHHHHHHHHHHHHHHc
Confidence            9999999999999999999999999987543221111        12222222221 1113566677877777654

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.88  E-value=3.3e-22  Score=176.80  Aligned_cols=184  Identities=22%  Similarity=0.159  Sum_probs=163.2

Q ss_pred             CCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHH-HhcCCCHHHHHHHHHHHHHhccCC-CChhHHhhcCcHHHHHH
Q 021317           20 FEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVE-LLKFQNGTLRELAAAAILTLSAAA-PNKPAIAASGAAPLLVQ   97 (314)
Q Consensus        20 ~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~-lL~~~~~~~~~~a~~~L~~La~~~-~~~~~i~~~g~l~~Lv~   97 (314)
                      .+.+.+..|+..|.....+.+|...+.+.|++|+|+. +|.+++++++..|+++|++++.++ .++..+.+.|++|+|++
T Consensus        52 ~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~  131 (296)
T 1xqr_A           52 ADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR  131 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHH
Confidence            3456788888888866667789999999999999999 999999999999999999999864 67888999999999999


Q ss_pred             Hhcc-CCHHHHHHHHHHHHHhcCC-CCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCC-hhhhhHHHhcc
Q 021317           98 ILHS-GSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRIAITNSD  174 (314)
Q Consensus        98 lL~~-~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~  174 (314)
                      +|++ +++.++..|+++|.||+.+ ++....+.+.|+++.|+.+|++++  ..++..|+++|.+|+.+ ++.+..++ +.
T Consensus       132 LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d--~~v~~~A~~aLs~L~~~~~~~~~~vv-~~  208 (296)
T 1xqr_A          132 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQV--QKLKVKSAFLLQNLLVGHPEHKGTLC-SM  208 (296)
T ss_dssp             HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSC--HHHHHHHHHHHHHHHHHCGGGHHHHH-HT
T ss_pred             HHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCC--HHHHHHHHHHHHHHHhCChHHHHHHH-Hc
Confidence            9996 4899999999999999965 456678888999999999999864  48899999999999876 56677777 79


Q ss_pred             CCHHHHHHHhhcCCHHHHHHHHHHHHHhhccC
Q 021317          175 GGILTLVETVEDGSLVSTQHAVGALLSLCQSC  206 (314)
Q Consensus       175 g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~  206 (314)
                      |+++.|+.+|.+++..+++.|+.+|.+|+...
T Consensus       209 g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~  240 (296)
T 1xqr_A          209 GMVQQLVALVRTEHSPFHEHVLGALCSLVTDF  240 (296)
T ss_dssp             THHHHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHcCCChhHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999999875

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.87  E-value=7.1e-21  Score=184.56  Aligned_cols=272  Identities=12%  Similarity=0.056  Sum_probs=215.8

Q ss_pred             eccccCCHHHHHHHHHHhHhhccCchhHHHHHh-cCCcHHHHHHhcC-CCHHHHHHHHHHHHHhccCCC-----------
Q 021317           15 FMETYFEGYARRLNLMGPLWQLSKTRNKVKIAT-AGAIPPLVELLKF-QNGTLRELAAAAILTLSAAAP-----------   81 (314)
Q Consensus        15 ~~l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~-~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~La~~~~-----------   81 (314)
                      .++..++...++.|++.|..++.+++.|..+++ .|+++.|+.++++ ++.++.-.++.+|.||+...+           
T Consensus       341 ~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~  420 (778)
T 3opb_A          341 NAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXX  420 (778)
T ss_dssp             HHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC----
T ss_pred             HHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhh
Confidence            455666666699999999977778899998886 5779999999985 677888899999999997422           


Q ss_pred             ----------------------------ChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCc
Q 021317           82 ----------------------------NKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAV  133 (314)
Q Consensus        82 ----------------------------~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i  133 (314)
                                                  ++..+.+.|++|+|+.++.++++.++..++++|.||+.++++|..+++.|++
T Consensus       421 Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal  500 (778)
T 3opb_A          421 XXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAV  500 (778)
T ss_dssp             --------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHH
T ss_pred             hhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH
Confidence                                        2445668999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccCCc-hHHHHHHHHHHHHhcCChhhhhHHHh--ccCCHHHHHHHhhc--CCH------------HHHHHHH
Q 021317          134 PPLINLLKDCKKY-SKFAEKATALLEILSSSEEGRIAITN--SDGGILTLVETVED--GSL------------VSTQHAV  196 (314)
Q Consensus       134 ~~Lv~lL~~~~~~-~~~~~~a~~~L~~L~~~~~~~~~i~~--~~g~v~~Lv~ll~~--~~~------------~~~~~A~  196 (314)
                      ++|+.++.++... ...+..|+.+|.++....+....+..  ..|+|+.|+.+|..  +..            .-+..|+
T Consensus       501 ~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL  580 (778)
T 3opb_A          501 KIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEAL  580 (778)
T ss_dssp             HHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHH
T ss_pred             HHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHH
Confidence            9999999987542 13678999999998855444443321  14899999999983  211            1267999


Q ss_pred             HHHHHhhccCc---HHHHHHHHHc-CChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCch---hhcchh------hhHHHH
Q 021317          197 GALLSLCQSCR---DKYRQLILKE-GAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE---KRLSSS------VLEKIV  263 (314)
Q Consensus       197 ~~L~~L~~~~~---~~~~~~i~~~-g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~---~~~~~~------~~~~lv  263 (314)
                      .+|.||+..+.   ++.|..+++. |+++.|..++.++++.+|++|++++.||+.++..   +....+      .++.+|
T Consensus       581 ~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV  660 (778)
T 3opb_A          581 LALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILV  660 (778)
T ss_dssp             HHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHH
T ss_pred             HHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHH
Confidence            99999998763   2568888885 9999999999999999999999999999987753   232211      244454


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHHHH
Q 021317          264 YDIAARVDGADKAAETAKRLLQDMVQ  289 (314)
Q Consensus       264 ~~l~~~~~~~~~~~~~A~~~L~~l~~  289 (314)
                      ..+.   .++++.++.|..+|.++..
T Consensus       661 ~Ll~---s~D~~~r~AAagALAnLts  683 (778)
T 3opb_A          661 KLLQ---LSDVESQRAVAAIFANIAT  683 (778)
T ss_dssp             HGGG---CSCHHHHHHHHHHHHHHHH
T ss_pred             HHHc---CCCHHHHHHHHHHHHHhcC
Confidence            4443   4568999999999999974

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.87  E-value=1.9e-21  Score=188.57  Aligned_cols=246  Identities=15%  Similarity=0.110  Sum_probs=196.8

Q ss_pred             hHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHH---HHHHHHHHHHHh
Q 021317           41 NKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQ---GRVDAVTALHYL  117 (314)
Q Consensus        41 ~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~---~~~~a~~~L~nL  117 (314)
                      ++..+.+.|++|.|+.++.++++.+++.++++|.||+.++++|..+++.|++++|+.+|.+++..   .+..|+.+|.+|
T Consensus       449 ~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArL  528 (778)
T 3opb_A          449 NEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRM  528 (778)
T ss_dssp             HHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence            67788899999999999999999999999999999999999999999999999999999988654   899999999999


Q ss_pred             cCCCCCchhhhh---cCCcHHHHHHhhccCC-----------ch-HHHHHHHHHHHHhcCCh-----hhhhHHHhccCCH
Q 021317          118 STCKENSSPILD---ATAVPPLINLLKDCKK-----------YS-KFAEKATALLEILSSSE-----EGRIAITNSDGGI  177 (314)
Q Consensus       118 s~~~~~~~~i~~---~g~i~~Lv~lL~~~~~-----------~~-~~~~~a~~~L~~L~~~~-----~~~~~i~~~~g~v  177 (314)
                      +.+.+....+..   .|++++|+.+|..+..           .. .-...|+.+|.||+..+     +.|..++.+.|++
T Consensus       529 lis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~  608 (778)
T 3opb_A          529 LIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYW  608 (778)
T ss_dssp             HHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHH
T ss_pred             HhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHH
Confidence            966554443321   4899999999983211           11 12557999999999986     3478788334999


Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHH-HHHHH------cCChHHHHHhhhcCCHHHHHHHHHHHHHhhc-CC
Q 021317          178 LTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYR-QLILK------EGAIPGLLRLTVEGTFEAQERARTLLDLLRD-TP  249 (314)
Q Consensus       178 ~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~-~~i~~------~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~-~~  249 (314)
                      +.|..+|.+++..++..|+.+++||+.+.  +.+ +.+.+      .+.++.|+.++..++..+|++|+++|.+++. ++
T Consensus       609 ~~L~~LL~s~n~~VrrAA~elI~NL~~~~--e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~  686 (778)
T 3opb_A          609 STIENLMLDENVPLQRSTLELISNMMSHP--LTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIP  686 (778)
T ss_dssp             HHHHHGGGCSSHHHHHHHHHHHHHHHTSG--GGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHhCCc--HHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCh
Confidence            99999999999999999999999999764  333 23432      2248899999999999999999999999964 43


Q ss_pred             c--hhhcch-hhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q 021317          250 Q--EKRLSS-SVLEKIVYDIAARVDGADKAAETAKRLLQDMVQ  289 (314)
Q Consensus       250 ~--~~~~~~-~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~  289 (314)
                      .  ...++. ++++.++..+..+ ..++..+.++..++.||+.
T Consensus       687 ~ia~~ll~~~~gi~~Ll~lL~~~-~~~~~l~~R~~~~l~NL~~  728 (778)
T 3opb_A          687 LIAKELLTKKELIENAIQVFADQ-IDDIELRQRLLMLFFGLFE  728 (778)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHccccHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHH
Confidence            2  234443 6888787766633 2458899999999999995

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.52  E-value=1.4e-12  Score=123.92  Aligned_cols=266  Identities=13%  Similarity=0.147  Sum_probs=203.2

Q ss_pred             ccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCC--CHHHHHHHHHHHHHhccCCCC------------
Q 021317           18 TYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQ--NGTLRELAAAAILTLSAAAPN------------   82 (314)
Q Consensus        18 ~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~La~~~~~------------   82 (314)
                      ++.-.+.|+.|+..|. ++.   +++..+ ..++++.|+..|+.+  |.++...++.+|.++...++.            
T Consensus        32 ~~tl~eDRR~Av~~Lk~~sk---~y~~~V-g~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~  107 (651)
T 3grl_A           32 SSTLLDDRRNAVRALKSLSK---KYRLEV-GIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSE  107 (651)
T ss_dssp             HCCSHHHHHHHHHHHHHTTT---TTTTHH-HHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------
T ss_pred             hccchhHHHHHHHHHHHHHH---HhHHHh-hhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccch
Confidence            3455788999999998 543   455554 457799999999754  788888899999886553211            


Q ss_pred             ------hhH-HhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC-CC-Cchhhhh-cCCcHHHHHHhhccCCchHHHHH
Q 021317           83 ------KPA-IAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC-KE-NSSPILD-ATAVPPLINLLKDCKKYSKFAEK  152 (314)
Q Consensus        83 ------~~~-i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~-~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~~~  152 (314)
                            ... +.+.+.++.|+.+|++.+-.+|.+++.+|..|+.. ++ +++.|.. .++++.|+.+|.+..+  .++..
T Consensus       108 ~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE--~iRne  185 (651)
T 3grl_A          108 DLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSRE--VIRND  185 (651)
T ss_dssp             CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSH--HHHHH
T ss_pred             HHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchH--HHHHH
Confidence                  112 23578999999999999999999999999999944 33 6788885 6999999999998643  88889


Q ss_pred             HHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCC----HHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhh
Q 021317          153 ATALLEILSSSEEGRIAITNSDGGILTLVETVEDGS----LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTV  228 (314)
Q Consensus       153 a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~----~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~  228 (314)
                      ++.+|.+|+.++.+.++++.-.|+++.|+.++....    ..+.+.|+.+|.||...++ .++..+.+.|+++.|..++.
T Consensus       186 allLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~-sNQ~~FrEt~~i~~L~~LL~  264 (651)
T 3grl_A          186 GVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNN-SNQNFFKEGSYIQRMKPWFE  264 (651)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTCGGGGGGGGC
T ss_pred             HHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCH-HHHHHHHHcCCHHHHHHHhC
Confidence            999999999998777777656899999999997643    4788999999999999985 67999999999999999987


Q ss_pred             cCCH------HHHHH---HHHHHHHhhcCCc---------hhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Q 021317          229 EGTF------EAQER---ARTLLDLLRDTPQ---------EKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR  290 (314)
Q Consensus       229 ~~~~------~~~~~---A~~~L~~l~~~~~---------~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~  290 (314)
                      .+.+      ..-.+   +..+++.|.....         ..+.+.|+++.++..+.. ..-....+..|..++..+.+.
T Consensus       265 ~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~-~~~p~~i~~~Al~tla~~irg  343 (651)
T 3grl_A          265 VGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMA-TGVPADILTETINTVSEVIRG  343 (651)
T ss_dssp             CCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTC-SSCCHHHHHHHHHHHHHHHTT
T ss_pred             CCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHcc-CCCCHHHHHHHHHHHHHHHhC
Confidence            5432      12223   5567777765422         134567888877766552 222477889999999988754


Q ss_pred             H
Q 021317          291 S  291 (314)
Q Consensus       291 s  291 (314)
                      +
T Consensus       344 N  344 (651)
T 3grl_A          344 C  344 (651)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.48  E-value=1.9e-12  Score=122.89  Aligned_cols=274  Identities=11%  Similarity=0.031  Sum_probs=202.3

Q ss_pred             CCHHHHHHHHHHhH-hhccCch-----------------hHHHHH-hcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC
Q 021317           20 FEGYARRLNLMGPL-WQLSKTR-----------------NKVKIA-TAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA   80 (314)
Q Consensus        20 ~~~~~~~~a~~al~-l~~~~~~-----------------~~~~l~-~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~   80 (314)
                      .|.++.+.++..|. +...+++                 +...+. +.+.++.|+.+|++++..+|..++..|..|+.+.
T Consensus        74 ~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r  153 (651)
T 3grl_A           74 SDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQL  153 (651)
T ss_dssp             TCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHS
T ss_pred             ccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcC
Confidence            57888999999987 4443332                 222333 5788999999999999999999999999998864


Q ss_pred             --CChhHHh-hcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhh-cCCcHHHHHHhhccC--CchHHHHHHH
Q 021317           81 --PNKPAIA-ASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILD-ATAVPPLINLLKDCK--KYSKFAEKAT  154 (314)
Q Consensus        81 --~~~~~i~-~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~-~g~i~~Lv~lL~~~~--~~~~~~~~a~  154 (314)
                        ..+..|. .++|++.|+.+|.++.+.+|..++..|.+|+.+..+.+.++. +|+++.|++++....  +...++..|+
T Consensus       154 ~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL  233 (651)
T 3grl_A          154 GPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCL  233 (651)
T ss_dssp             HHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHH
T ss_pred             cHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHH
Confidence              3678887 569999999999999999999999999999977666555555 799999999998632  2346778999


Q ss_pred             HHHHHhcCCh-hhhhHHHhccCCHHHHHHHhhcCCHH------HHHH---HHHHHHHhhccCc-----HHHHHHHHHcCC
Q 021317          155 ALLEILSSSE-EGRIAITNSDGGILTLVETVEDGSLV------STQH---AVGALLSLCQSCR-----DKYRQLILKEGA  219 (314)
Q Consensus       155 ~~L~~L~~~~-~~~~~i~~~~g~v~~Lv~ll~~~~~~------~~~~---A~~~L~~L~~~~~-----~~~~~~i~~~g~  219 (314)
                      .++.||..++ .|+..+. +.|+++.|..+++.+...      ...+   ++.++.-|+..+.     ..++..+.+.|+
T Consensus       234 ~ll~nLLr~N~sNQ~~Fr-Et~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~  312 (651)
T 3grl_A          234 ILLQNLLKNNNSNQNFFK-EGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGL  312 (651)
T ss_dssp             HHHHHHHTTCHHHHHHHH-HTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTH
T ss_pred             HHHHHHHhcCHHHHHHHH-HcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCC
Confidence            9999999885 4666666 899999999999754321      2233   6666666765421     257889999999


Q ss_pred             hHHHHHhhhcC--CHHHHHHHHHHHHHhhcCCch--hhcc-h-----hhhHHHHHHHhhc--CCCHHHHHHHHHHHHHHH
Q 021317          220 IPGLLRLTVEG--TFEAQERARTLLDLLRDTPQE--KRLS-S-----SVLEKIVYDIAAR--VDGADKAAETAKRLLQDM  287 (314)
Q Consensus       220 v~~Lv~ll~~~--~~~~~~~A~~~L~~l~~~~~~--~~~~-~-----~~~~~lv~~l~~~--~~~~~~~~~~A~~~L~~l  287 (314)
                      ++.|++++...  ...++..|..++..+.++++.  ..+. .     ...+.++..|...  .....+.+..|..+++.+
T Consensus       313 l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay  392 (651)
T 3grl_A          313 LQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCF  392 (651)
T ss_dssp             HHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence            99999987765  578889999999998876642  1111 0     0112333322211  122477889999999999


Q ss_pred             HHHHHHH
Q 021317          288 VQRSMEL  294 (314)
Q Consensus       288 ~~~s~~~  294 (314)
                      ...+.+.
T Consensus       393 ~~~N~~~  399 (651)
T 3grl_A          393 LYKNQKG  399 (651)
T ss_dssp             HTTCHHH
T ss_pred             HhCCHHH
Confidence            9776543

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.46  E-value=5.6e-12  Score=105.36  Aligned_cols=189  Identities=19%  Similarity=0.153  Sum_probs=153.3

Q ss_pred             hcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchh
Q 021317           47 TAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSP  126 (314)
Q Consensus        47 ~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~  126 (314)
                      ..+.++.|+..|.++++.++..|+..|..+.          ..++++.|+++|.++++.++..++.+|..+..       
T Consensus        17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~----------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------   79 (211)
T 3ltm_A           17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIG----------DERAVEPLIKALKDEDAWVRRAAADALGQIGD-------   79 (211)
T ss_dssp             CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred             CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------CccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence            3567899999999999999999999998873          35789999999999999999999999998753       


Q ss_pred             hhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccC
Q 021317          127 ILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSC  206 (314)
Q Consensus       127 i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~  206 (314)
                         .+.++.|+.+|.+.++  .++..++.+|..+..           .+.++.|+.++.+.++.++..|+.+|..+... 
T Consensus        80 ---~~~~~~L~~~l~~~~~--~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-  142 (211)
T 3ltm_A           80 ---ERAVEPLIKALKDEDG--WVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-  142 (211)
T ss_dssp             ---GGGHHHHHHHTTCSSH--HHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-
T ss_pred             ---HHHHHHHHHHHcCCCH--HHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-
Confidence               3578999999987643  788889999987643           45789999999999999999999999998532 


Q ss_pred             cHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 021317          207 RDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQD  286 (314)
Q Consensus       207 ~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~  286 (314)
                                 ..++.|..++.+.++.++..|+.+|..+..        ..+++.+...+.   +.++..+..|..+|.+
T Consensus       143 -----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~---d~~~~vr~~A~~aL~~  200 (211)
T 3ltm_A          143 -----------RAVEPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAE---TGTGFARKVAVNYLET  200 (211)
T ss_dssp             -----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHH---HCCHHHHHHHHHHHHC
T ss_pred             -----------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHh---CCCHHHHHHHHHHHHh
Confidence                       368889999999999999999999999843        345555554444   4568899999999998


Q ss_pred             HHHHH
Q 021317          287 MVQRS  291 (314)
Q Consensus       287 l~~~s  291 (314)
                      +....
T Consensus       201 ~~~~~  205 (211)
T 3ltm_A          201 HKSFN  205 (211)
T ss_dssp             -----
T ss_pred             cCCCC
Confidence            87543

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.45  E-value=3e-12  Score=107.07  Aligned_cols=182  Identities=23%  Similarity=0.160  Sum_probs=149.5

Q ss_pred             eeccccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHH
Q 021317           14 VFMETYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAP   93 (314)
Q Consensus        14 v~~l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~   93 (314)
                      +..|.++++.+|..|+.+|.....          ...++.|+++|.++++.++..|+.+|..+.          ..+.++
T Consensus        25 ~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~----------~~~~~~   84 (211)
T 3ltm_A           25 IKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG----------DERAVE   84 (211)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC----------CGGGHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC----------CHHHHH
Confidence            567888999999999998874322          367899999999999999999999999884          357899


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhc
Q 021317           94 LLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNS  173 (314)
Q Consensus        94 ~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~  173 (314)
                      .|+++|.++++.++..++.+|.++..          .+.++.|+.++.+.+.  .++..++.+|..+..           
T Consensus        85 ~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~--~vr~~a~~aL~~~~~-----------  141 (211)
T 3ltm_A           85 PLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDW--FVRIAAAFALGEIGD-----------  141 (211)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSH--HHHHHHHHHHHHHCC-----------
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCH--HHHHHHHHHHHHcCC-----------
Confidence            99999999999999999999998853          3578999999977543  788899999988742           


Q ss_pred             cCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCc
Q 021317          174 DGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQ  250 (314)
Q Consensus       174 ~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~  250 (314)
                      ...++.|..++.+.++.++..|+.+|..+..  +          .+++.|.+++.++++.++..|..+|.++.....
T Consensus       142 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~----------~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~  206 (211)
T 3ltm_A          142 ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E----------RVRAAMEKLAETGTGFARKVAVNYLETHKSFNH  206 (211)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H----------HHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h----------hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence            3578899999999999999999999999863  1          267888899999999999999999999876553

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.44  E-value=5.1e-12  Score=104.80  Aligned_cols=179  Identities=23%  Similarity=0.159  Sum_probs=151.2

Q ss_pred             eeeccccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcH
Q 021317           13 EVFMETYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAA   92 (314)
Q Consensus        13 ~v~~l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l   92 (314)
                      .+.+|+++++.+|..|+.+|.....          .+.++.|+++|.++++.++..|+.+|..+.          ..+++
T Consensus        19 ~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~----------~~~~~   78 (201)
T 3ltj_A           19 YIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG----------DERAV   78 (201)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CGGGH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC----------CHHHH
Confidence            3678999999999999999974332          356899999999999999999999998873          34789


Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHh
Q 021317           93 PLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITN  172 (314)
Q Consensus        93 ~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~  172 (314)
                      +.|+.+|.++++.++..|+.+|.++..          ..+++.|+.++.+.+  ..++..+..+|..+..          
T Consensus        79 ~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~--~~vr~~a~~aL~~~~~----------  136 (201)
T 3ltj_A           79 EPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDED--WFVRIAAAFALGEIGD----------  136 (201)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSS--HHHHHHHHHHHHHHTC----------
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCC--HHHHHHHHHHHHHhCC----------
Confidence            999999999999999999999998753          347899999997754  4788899999987742          


Q ss_pred             ccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 021317          173 SDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLR  246 (314)
Q Consensus       173 ~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~  246 (314)
                       .+.++.|..++.+.++.++..|+.+|..+.  .+          .+++.|..++.+.++.++..|..+|..+.
T Consensus       137 -~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~--~~----------~~~~~L~~~l~d~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          137 -ERAVEPLIKALKDEDGWVRQSAADALGEIG--GE----------RVRAAMEKLAETGTGFARKVAVNYLETHK  197 (201)
T ss_dssp             -GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--SH----------HHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred             -HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--ch----------hHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence             458889999999999999999999999985  22          16788888999999999999999998874

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.42  E-value=2.1e-11  Score=101.10  Aligned_cols=185  Identities=19%  Similarity=0.163  Sum_probs=152.3

Q ss_pred             cCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhh
Q 021317           48 AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPI  127 (314)
Q Consensus        48 ~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i  127 (314)
                      .+..+.+++.|.++++.++..|+.+|..+.          ..+.++.|+++|.++++.++..++.+|..+..        
T Consensus        13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~----------~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--------   74 (201)
T 3ltj_A           13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIG----------DERAVEPLIKALKDEDAWVRRAAADALGQIGD--------   74 (201)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------
T ss_pred             CcchHHHHHHhcCCCHHHHHHHHHHHHhcC----------ChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence            355788999999999999999999999874          35789999999999999999999999988753        


Q ss_pred             hhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCc
Q 021317          128 LDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCR  207 (314)
Q Consensus       128 ~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~  207 (314)
                        .++++.|+.+|.+.+  +.++..|+.+|..+..           ...++.|+.++.+.++.++..|+.+|..+...  
T Consensus        75 --~~~~~~L~~~l~d~~--~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~--  137 (201)
T 3ltj_A           75 --ERAVEPLIKALKDED--GWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGDE--  137 (201)
T ss_dssp             --GGGHHHHHHHTTCSS--HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG--
T ss_pred             --HHHHHHHHHHHcCCC--HHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH--
Confidence              357899999998754  4788889999987643           45788999999999999999999999998632  


Q ss_pred             HHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 021317          208 DKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDM  287 (314)
Q Consensus       208 ~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l  287 (314)
                                ..++.|..++.+.++.++..|+.+|..+..        ..+++.+...+.   +.++..+..|..+|.++
T Consensus       138 ----------~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--------~~~~~~L~~~l~---d~~~~vr~~A~~aL~~l  196 (201)
T 3ltj_A          138 ----------RAVEPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAE---TGTGFARKVAVNYLETH  196 (201)
T ss_dssp             ----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHH---HCCHHHHHHHHHHHHHC
T ss_pred             ----------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHh---CCCHHHHHHHHHHHHHH
Confidence                      378899999999999999999999999832        335555555454   45688999999999876


Q ss_pred             H
Q 021317          288 V  288 (314)
Q Consensus       288 ~  288 (314)
                      .
T Consensus       197 ~  197 (201)
T 3ltj_A          197 K  197 (201)
T ss_dssp             C
T ss_pred             H
Confidence            5

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.41  E-value=6.5e-12  Score=109.64  Aligned_cols=220  Identities=11%  Similarity=0.020  Sum_probs=161.7

Q ss_pred             eeccccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHH
Q 021317           14 VFMETYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAP   93 (314)
Q Consensus        14 v~~l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~   93 (314)
                      +..|.++++.+|..|+.+|....          ..+.++.|+.+|.++++.++..|+.+|..+...+....     ..++
T Consensus        29 ~~~L~~~~~~vr~~A~~~L~~~~----------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~-----~l~~   93 (280)
T 1oyz_A           29 FRLLDDHNSLKRISSARVLQLRG----------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED-----NVFN   93 (280)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHHC----------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH-----HHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHccC----------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch-----HHHH
Confidence            56788899999999999988443          12467889999999999999999999999865332211     1233


Q ss_pred             HHH-HHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHh
Q 021317           94 LLV-QILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITN  172 (314)
Q Consensus        94 ~Lv-~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~  172 (314)
                      .|. .++.++++.++..++.+|.++.....    .....+++.|+.++.+.+  ..++..++.+|.++..          
T Consensus        94 ~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~--~~vR~~a~~aL~~~~~----------  157 (280)
T 1oyz_A           94 ILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKS--TNVRRATAFAISVIND----------  157 (280)
T ss_dssp             HHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSC--HHHHHHHHHHHHTC------------
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCC--HHHHHHHHHHHHhcCC----------
Confidence            333 24577899999999999999873221    112346788888888754  3788888888876542          


Q ss_pred             ccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchh
Q 021317          173 SDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEK  252 (314)
Q Consensus       173 ~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~  252 (314)
                       .+.++.|+.++.+.++.++..|+.+|..+....+          .+++.|+.++.+.++.++..|+.+|..+..     
T Consensus       158 -~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~----------~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~-----  221 (280)
T 1oyz_A          158 -KATIPLLINLLKDPNGDVRNWAAFAININKYDNS----------DIRDCFVEMLQDKNEEVRIEAIIGLSYRKD-----  221 (280)
T ss_dssp             --CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH----------HHHHHHHHHTTCSCHHHHHHHHHHHHHTTC-----
T ss_pred             -HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH----------HHHHHHHHHhcCCCHHHHHHHHHHHHHhCC-----
Confidence             3589999999999999999999999999864432          257888899999999999999999998852     


Q ss_pred             hcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 021317          253 RLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMV  288 (314)
Q Consensus       253 ~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~  288 (314)
                         ..+++.++..+.   +  ++.+..|..+|..+.
T Consensus       222 ---~~~~~~L~~~l~---d--~~vr~~a~~aL~~i~  249 (280)
T 1oyz_A          222 ---KRVLSVLCDELK---K--NTVYDDIIEAAGELG  249 (280)
T ss_dssp             ---GGGHHHHHHHHT---S--SSCCHHHHHHHHHHC
T ss_pred             ---HhhHHHHHHHhc---C--ccHHHHHHHHHHhcC
Confidence               345666655554   2  226677777777665

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.34  E-value=9.3e-11  Score=102.26  Aligned_cols=199  Identities=16%  Similarity=0.053  Sum_probs=151.6

Q ss_pred             HHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCc
Q 021317           45 IATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENS  124 (314)
Q Consensus        45 l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~  124 (314)
                      ....+.++.|+..|.++++.++..|+.+|.++.          ..+.++.|+.+|.++++.++..|+.+|..+...+.  
T Consensus        19 ~~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~----------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~--   86 (280)
T 1oyz_A           19 QCKKLNDDELFRLLDDHNSLKRISSARVLQLRG----------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK--   86 (280)
T ss_dssp             HHHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT--
T ss_pred             HHHHhhHHHHHHHHHcCCHHHHHHHHHHHHccC----------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc--
Confidence            345788999999999999999999999999985          35678999999999999999999999999875432  


Q ss_pred             hhhhhcCCcHHHHHHhhc---cCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHH
Q 021317          125 SPILDATAVPPLINLLKD---CKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLS  201 (314)
Q Consensus       125 ~~i~~~g~i~~Lv~lL~~---~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~  201 (314)
                             .++.++.++.+   .+++..++..+..+|.++.......     ....++.|+.++.+.++.++..|+.+|.+
T Consensus        87 -------~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~-----~~~~~~~L~~~l~d~~~~vR~~a~~aL~~  154 (280)
T 1oyz_A           87 -------CEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITAFDKSTNVRRATAFAISV  154 (280)
T ss_dssp             -------THHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHTTCSCHHHHHHHHHHHHT
T ss_pred             -------cchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc-----cHHHHHHHHHHhhCCCHHHHHHHHHHHHh
Confidence                   23333333321   1234478889999998886422111     13467899999999999999999999988


Q ss_pred             hhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhcCCCHHHHHHHHH
Q 021317          202 LCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAK  281 (314)
Q Consensus       202 L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~  281 (314)
                      +..            ...++.|+.++.+.++.++..|+++|..+....      ..+++.++..+.   +.++..+..|.
T Consensus       155 ~~~------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~------~~~~~~L~~~l~---d~~~~vR~~A~  213 (280)
T 1oyz_A          155 IND------------KATIPLLINLLKDPNGDVRNWAAFAININKYDN------SDIRDCFVEMLQ---DKNEEVRIEAI  213 (280)
T ss_dssp             C---------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC------HHHHHHHHHHTT---CSCHHHHHHHH
T ss_pred             cCC------------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc------HHHHHHHHHHhc---CCCHHHHHHHH
Confidence            753            148999999999999999999999999885322      345555655443   56688899999


Q ss_pred             HHHHHHH
Q 021317          282 RLLQDMV  288 (314)
Q Consensus       282 ~~L~~l~  288 (314)
                      ..|.++.
T Consensus       214 ~aL~~~~  220 (280)
T 1oyz_A          214 IGLSYRK  220 (280)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHhC
Confidence            9998875

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.33  E-value=3.9e-12  Score=124.94  Aligned_cols=195  Identities=18%  Similarity=0.182  Sum_probs=152.3

Q ss_pred             CCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHH-HHhccCCHHHHHHHHHHHHHhcCC--CCCch
Q 021317           49 GAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLV-QILHSGSVQGRVDAVTALHYLSTC--KENSS  125 (314)
Q Consensus        49 g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv-~lL~~~~~~~~~~a~~~L~nLs~~--~~~~~  125 (314)
                      ..+.++++.|++++++.|..|+.+|.+|+.++..+..+...|++.+++ .+|.+++.+++..|+++|+||+..  .+.+.
T Consensus        34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~  113 (684)
T 4gmo_A           34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV  113 (684)
T ss_dssp             HTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             hhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence            456778889999999999999999999999888888899999998765 568899999999999999999954  46788


Q ss_pred             hhhhcCCcHHHHHHhhccCC------------c-------hHHHHHHHHHHHHhcCC-hhhhhHHHhccCCHHHHHHHhh
Q 021317          126 PILDATAVPPLINLLKDCKK------------Y-------SKFAEKATALLEILSSS-EEGRIAITNSDGGILTLVETVE  185 (314)
Q Consensus       126 ~i~~~g~i~~Lv~lL~~~~~------------~-------~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~v~~Lv~ll~  185 (314)
                      .+.+.|++++|..+++....            .       ..+...++.+|++||.. .+....+. ..|.++.|+..|.
T Consensus       114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~-~~~~l~~l~~~L~  192 (684)
T 4gmo_A          114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVA-TKQTILRLLFRLI  192 (684)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH-TCHHHHHHHHHHH
T ss_pred             HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH-hcccHHHHHHHHH
Confidence            89999999999999863110            0       12445678899999866 44556666 6899999999885


Q ss_pred             cC---CHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChH---HHHHhhhcCCHHHHHHHHHHHHHhh
Q 021317          186 DG---SLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIP---GLLRLTVEGTFEAQERARTLLDLLR  246 (314)
Q Consensus       186 ~~---~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~---~Lv~ll~~~~~~~~~~A~~~L~~l~  246 (314)
                      +.   ...++..|+.+|..++.+++ +..+.+.+.+...   .+..+ ..++...+..++++|.|+.
T Consensus       193 ~~~~~~~~v~~~a~~~L~~ls~dn~-~~~~~i~~~~~~~~~~~ll~~-~~~~~~~~~la~giL~Ni~  257 (684)
T 4gmo_A          193 SADIAPQDIYEEAISCLTTLSEDNL-KVGQAITDDQETHVYDVLLKL-ATGTDPRAVMACGVLHNVF  257 (684)
T ss_dssp             HHCCSCHHHHHHHHHHHHHHHTTCH-HHHHHHHTCCSSCHHHHHHHH-HHSSCTTHHHHHHHHHHHH
T ss_pred             hcCCCcHHHHHHHHHHHHHHhccCH-HHHHHHHhcchHHHHHHHHHH-hcCCcHHHHHHHHHHHhHh
Confidence            42   36899999999999999875 6677777766433   22223 3344555777889999874

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.28  E-value=6.1e-11  Score=119.26  Aligned_cols=267  Identities=12%  Similarity=0.069  Sum_probs=183.4

Q ss_pred             eccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHH
Q 021317           15 FMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAP   93 (314)
Q Consensus        15 ~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~   93 (314)
                      ..++++++.+|..|+.++. +....+..... .-...++.++.++.+++++++..++.+|..++......-.-.-.+.++
T Consensus       181 ~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~-~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~  259 (852)
T 4fdd_A          181 QFFKHSSPKIRSHAVACVNQFIISRTQALML-HIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVE  259 (852)
T ss_dssp             TTTTCSSHHHHHHHHHHHHTTTTTTCHHHHT-SHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHH
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHhcccHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            4567789999999999998 54433321111 112567888888889999999999999999987432111101125788


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhh--cCCcHHHHHHhh----------cc---C-------CchHHHH
Q 021317           94 LLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILD--ATAVPPLINLLK----------DC---K-------KYSKFAE  151 (314)
Q Consensus        94 ~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~--~g~i~~Lv~lL~----------~~---~-------~~~~~~~  151 (314)
                      .++.++.+.++.++..|+..+.+++.....+..+..  ...++.++..+.          ..   +       ....++.
T Consensus       260 ~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~  339 (852)
T 4fdd_A          260 YMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRK  339 (852)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHH
T ss_pred             HHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHH
Confidence            888999999999999999999999876533332211  235566666662          11   0       1113566


Q ss_pred             HHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCC
Q 021317          152 KATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGT  231 (314)
Q Consensus       152 ~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~  231 (314)
                      .+..+|..++....  ..+.  ...++.+..++.+.+..+|+.|+.+|.+++....+... . .-.+.++.|+..+.+.+
T Consensus       340 ~a~~~L~~la~~~~--~~~~--~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~-~-~l~~~l~~l~~~l~d~~  413 (852)
T 4fdd_A          340 CSAAALDVLANVYR--DELL--PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMI-P-YLPELIPHLIQCLSDKK  413 (852)
T ss_dssp             HHHHHHHHHHHHHG--GGGH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHG-G-GHHHHHHHHHHHTTCSS
T ss_pred             HHHHHHHHHHHhcc--HHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHH-H-HHHHHHHHHHHHcCCCC
Confidence            77788877775433  2333  24677888888888899999999999999987642211 1 12457889999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCch---hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Q 021317          232 FEAQERARTLLDLLRDTPQE---KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRS  291 (314)
Q Consensus       232 ~~~~~~A~~~L~~l~~~~~~---~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s  291 (314)
                      +.++..|++++.+++.....   ......+++.++..+.   +.+++.++.|..+|.++.+..
T Consensus       414 ~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~---d~~~~vr~~a~~aL~~l~~~~  473 (852)
T 4fdd_A          414 ALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRIL---DSNKRVQEAACSAFATLEEEA  473 (852)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHHHHh
Confidence            99999999999999864322   1112344555544443   556899999999999998653

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.11  E-value=5.7e-10  Score=112.19  Aligned_cols=268  Identities=13%  Similarity=0.065  Sum_probs=178.5

Q ss_pred             eeeccccCCHHHHHHHHHHhH-hhccCchhHHHHH----hcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHh
Q 021317           13 EVFMETYFEGYARRLNLMGPL-WQLSKTRNKVKIA----TAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIA   87 (314)
Q Consensus        13 ~v~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~----~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~   87 (314)
                      .+..++++++..++.++.++. ++...+..-..-.    -...+|.+++.+.++++.+|..|+.+|.++.........-.
T Consensus       133 L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~  212 (852)
T 4fdd_A          133 LCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLH  212 (852)
T ss_dssp             HHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTS
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHH
Confidence            456778889999999999988 5543322211000    12356777888888899999999999988765432111111


Q ss_pred             hcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCc-hhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhh
Q 021317           88 ASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENS-SPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEG  166 (314)
Q Consensus        88 ~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~  166 (314)
                      -.+.++.+..++.++++.++..++.+|.+++...... .... .+.++.++.++++.  +..++..|+..+..++.....
T Consensus       213 ~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~--~~~vr~~a~e~l~~l~~~~~~  289 (852)
T 4fdd_A          213 IDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQDQ--DENVALEACEFWLTLAEQPIC  289 (852)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHTCS--SHHHHHHHHHHHHHHTTSTTH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHccCC--cHHHHHHHHHHHHHHhcchhH
Confidence            2357888999999999999999999999998543211 1111 24677788887764  347888999999998876544


Q ss_pred             hhHHHh-ccCCHHHHHHHhh-----------c-----------CCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHH
Q 021317          167 RIAITN-SDGGILTLVETVE-----------D-----------GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGL  223 (314)
Q Consensus       167 ~~~i~~-~~g~v~~Lv~ll~-----------~-----------~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~L  223 (314)
                      +..+.. -...++.++..+.           +           .+-.++..|..+|..++...++    .+. ...++.+
T Consensus       290 ~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~----~~~-~~l~~~l  364 (852)
T 4fdd_A          290 KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD----ELL-PHILPLL  364 (852)
T ss_dssp             HHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG----GGH-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH----HHH-HHHHHHH
Confidence            332210 0134566666662           2           1224688889999888865322    111 1356777


Q ss_pred             HHhhhcCCHHHHHHHHHHHHHhhcCCchhhc--chhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Q 021317          224 LRLTVEGTFEAQERARTLLDLLRDTPQEKRL--SSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRS  291 (314)
Q Consensus       224 v~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~--~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s  291 (314)
                      .+++.+.++.+|+.|+++|..++.+......  ...+++.++..+   .+..++.+..|..+|.++....
T Consensus       365 ~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l---~d~~~~Vr~~a~~~l~~l~~~~  431 (852)
T 4fdd_A          365 KELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCL---SDKKALVRSITCWTLSRYAHWV  431 (852)
T ss_dssp             HHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHT---TCSSHHHHHHHHHHHHHTHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHh
Confidence            7788888999999999999999987754221  123444443333   3667899999999999988754

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.11  E-value=7.8e-10  Score=105.80  Aligned_cols=255  Identities=12%  Similarity=0.057  Sum_probs=180.8

Q ss_pred             eccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHH
Q 021317           15 FMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAP   93 (314)
Q Consensus        15 ~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~   93 (314)
                      .+++++++.+|..++.++. ++..-..  . ......+|.+..++++++++++..++.+|..+...-...  ......+|
T Consensus       331 ~~l~d~~~~vR~~a~~~l~~l~~~~~~--~-~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~~lp  405 (588)
T 1b3u_A          331 ELVSDANQHVKSALASVIMGLSPILGK--D-NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR--QLSQSLLP  405 (588)
T ss_dssp             HHHTCSCHHHHHHHHTTGGGGHHHHCH--H-HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH--HHHHHHHH
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHhhH--h-HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH--HHHHHHHH
Confidence            4567788999999999988 4432111  1 122357788999999889999999998888876532111  12245788


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhc
Q 021317           94 LLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNS  173 (314)
Q Consensus        94 ~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~  173 (314)
                      .+..++.+++..++..++.+|..++..-..  .+.....++.++.++.+.+  ..+++.|+.++..++....... ..  
T Consensus       406 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~--~~Vr~~a~~~l~~l~~~~~~~~-~~--  478 (588)
T 1b3u_A          406 AIVELAEDAKWRVRLAIIEYMPLLAGQLGV--EFFDEKLNSLCMAWLVDHV--YAIREAATSNLKKLVEKFGKEW-AH--  478 (588)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHHHHHCG--GGCCHHHHHHHHHGGGCSS--HHHHHHHHHHHHHHHHHHCHHH-HH--
T ss_pred             HHHHHhcCCCchHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHhcCCc--HHHHHHHHHHHHHHHHHhCchh-HH--
Confidence            999999999999999999999998742111  1122346778888887753  3788899999988876533221 22  


Q ss_pred             cCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhh
Q 021317          174 DGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKR  253 (314)
Q Consensus       174 ~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~  253 (314)
                      ...+|.+..++.+.+..+|..++.++..++..-+   . .......++.|++++++.++.+|..++.+|..+...-....
T Consensus       479 ~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~---~-~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~  554 (588)
T 1b3u_A          479 ATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG---Q-DITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNST  554 (588)
T ss_dssp             HHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH---H-HHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHH
T ss_pred             HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcC---H-HHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhh
Confidence            3578888888888889999999999999986432   1 22334688999999999999999999999999987543333


Q ss_pred             cchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 021317          254 LSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMV  288 (314)
Q Consensus       254 ~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~  288 (314)
                      ....+.+.+ ..+.  .+.+.+.++.|..+|..+.
T Consensus       555 ~~~~~~p~l-~~l~--~d~d~~vr~~a~~al~~l~  586 (588)
T 1b3u_A          555 LQSEVKPIL-EKLT--QDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             HHHHHHHHH-HHHT--TCSSHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHH-HHHc--CCCchhHHHHHHHHHHHhh
Confidence            223334333 3343  5777899999999987653

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.09  E-value=7.5e-10  Score=105.94  Aligned_cols=188  Identities=13%  Similarity=0.105  Sum_probs=130.8

Q ss_pred             cHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhc
Q 021317           51 IPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDA  130 (314)
Q Consensus        51 v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~  130 (314)
                      +|.+..++.++++.+|..|+.+|..++..-...  ......+|.+..++.++++.+|..|+.+|..++..-+.  .....
T Consensus       166 ~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~  241 (588)
T 1b3u_A          166 RQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ--EDLEA  241 (588)
T ss_dssp             HHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH--HHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH--HHHHH
Confidence            455666777888899999999999887653321  22356788888899899999999999999888743221  11223


Q ss_pred             CCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHH
Q 021317          131 TAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKY  210 (314)
Q Consensus       131 g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~  210 (314)
                      ..++.+..++.+.  +..++..++.+|..++......  .. ....++.++.++++.++.++..|+.+|..++...+.+.
T Consensus       242 ~~~~~l~~~~~d~--~~~vR~~a~~~l~~l~~~~~~~--~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~  316 (588)
T 1b3u_A          242 LVMPTLRQAAEDK--SWRVRYMVADKFTELQKAVGPE--IT-KTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADC  316 (588)
T ss_dssp             HTHHHHHHHHTCS--SHHHHHHHHHTHHHHHHHHCHH--HH-HHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTT
T ss_pred             HHHHHHHHHccCC--CHHHHHHHHHHHHHHHHHhCcc--cc-hhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhh
Confidence            4677777777664  3378888888888887542221  12 24578899999999999999999999999987543221


Q ss_pred             HHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 021317          211 RQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRD  247 (314)
Q Consensus       211 ~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~  247 (314)
                      +....-...++.+..++.+.++.+|..++++|..++.
T Consensus       317 ~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~  353 (588)
T 1b3u_A          317 RENVIMSQILPCIKELVSDANQHVKSALASVIMGLSP  353 (588)
T ss_dssp             HHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHH
T ss_pred             hhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            2112223456777777777777888777777766654

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.08  E-value=8e-10  Score=106.74  Aligned_cols=252  Identities=13%  Similarity=0.063  Sum_probs=172.4

Q ss_pred             eccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHH
Q 021317           15 FMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAP   93 (314)
Q Consensus        15 ~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~   93 (314)
                      .++++++..+++.+-.++. ++..+++..     .-++..+.+-|.++++.++..|+.+|+++.. ++     .....++
T Consensus        56 ~l~~s~~~~~Krl~yl~l~~~~~~~~e~~-----~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~-~~-----~~~~l~~  124 (591)
T 2vgl_B           56 NCMQTDNLELKKLVYLYLMNYAKSQPDMA-----IMAVNSFVKDCEDPNPLIRALAVRTMGCIRV-DK-----ITEYLCE  124 (591)
T ss_dssp             HTTSSSCHHHHHHHHHHHHHHHHHSHHHH-----HTTHHHHGGGSSSSSHHHHHHHHHHHHTCCS-GG-----GHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHHcccCchHH-----HHHHHHHHHHcCCCCHHHHHHHHHHHHcCCh-HH-----HHHHHHH
Confidence            3456677777777766666 433333321     1234567777788889999888888888752 11     1234567


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhc
Q 021317           94 LLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNS  173 (314)
Q Consensus        94 ~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~  173 (314)
                      .+.++|.++++.+|..|+.+|.++....+  ..+.+.+.++.+..+|.+.+  +.++..|+.+|..++........+...
T Consensus       125 ~l~~~L~d~~~~VRk~A~~al~~i~~~~p--~~~~~~~~~~~l~~lL~d~d--~~V~~~A~~aL~~i~~~~~~~~~~~l~  200 (591)
T 2vgl_B          125 PLRKCLKDEDPYVRKTAAVCVAKLHDINA--QMVEDQGFLDSLRDLIADSN--PMVVANAVAALSEISESHPNSNLLDLN  200 (591)
T ss_dssp             HHHHHSSCSCHHHHHHHHHHHHHHHHSSC--CCHHHHHHHHHHHHTTSCSC--HHHHHHHHHHHHHHTTSCCSCCSCCCH
T ss_pred             HHHHHcCCCChHHHHHHHHHHHHHHhhCh--hhcccccHHHHHHHHhCCCC--hhHHHHHHHHHHHHHhhCCCccchhcc
Confidence            89999999999999999999999985322  23333578899999998754  488899999999998765422111001


Q ss_pred             cCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCC--ch
Q 021317          174 DGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP--QE  251 (314)
Q Consensus       174 ~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~--~~  251 (314)
                      .+.+..|+..+.+.++..+...+.+|..++..++++ .     ...++.+..++++.++.++..|++++..+....  ..
T Consensus       201 ~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~-~-----~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~  274 (591)
T 2vgl_B          201 PQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE-A-----QSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDS  274 (591)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH-H-----HHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTT
T ss_pred             HHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH-H-----HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCH
Confidence            345778888888888888889999998888654321 1     235778888889999999999999999987532  11


Q ss_pred             hhcc---hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Q 021317          252 KRLS---SSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRS  291 (314)
Q Consensus       252 ~~~~---~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s  291 (314)
                      ....   ..+.+.++ .+.   ++++..+..|...|..+.+..
T Consensus       275 ~~~~~~~~~~~~~L~-~L~---~~d~~vr~~aL~~l~~i~~~~  313 (591)
T 2vgl_B          275 DYYNMLLKKLAPPLV-TLL---SGEPEVQYVALRNINLIVQKR  313 (591)
T ss_dssp             BSHHHHHHHTHHHHH-HHT---TSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHH-HHh---cCCccHHHHHHHHHHHHHHhC
Confidence            1111   22333343 233   345788888998888888654

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.07  E-value=3.5e-09  Score=102.27  Aligned_cols=262  Identities=12%  Similarity=0.065  Sum_probs=177.1

Q ss_pred             eccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCh-hHHhhcCcH
Q 021317           15 FMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNK-PAIAASGAA   92 (314)
Q Consensus        15 ~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~-~~i~~~g~l   92 (314)
                      ..+.++++.+|+.|+.++. +...+++.   +.+.++++.|..+|.++++.++..|+.+|..++.++... ..-...+.+
T Consensus       128 ~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~  204 (591)
T 2vgl_B          128 KCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNI  204 (591)
T ss_dssp             HHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHH
T ss_pred             HHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHH
Confidence            5677889999999999998 66555542   233577899999999999999999999999998865322 111223567


Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcC----Chhhhh
Q 021317           93 PLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSS----SEEGRI  168 (314)
Q Consensus        93 ~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~----~~~~~~  168 (314)
                      +.|++.+.+.++-.+...+.+|..+...++.  .  ....++.+..++++.+.  .++..|..++..+..    +++...
T Consensus       205 ~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~--~--~~~~l~~l~~~l~~~~~--~V~~ea~~~i~~l~~~~~~~~~~~~  278 (591)
T 2vgl_B          205 NKLLTALNECTEWGQIFILDCLSNYNPKDDR--E--AQSICERVTPRLSHANS--AVVLSAVKVLMKFLELLPKDSDYYN  278 (591)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHTSCCCSHH--H--HHHHHHHHTTCSCSSTT--HHHHHHHHHHHHSCCSCCBTTBSHH
T ss_pred             HHHHHcCCCCCchHHHHHHHHHHHhCCCChH--H--HHHHHHHHHHHHcCCCh--HHHHHHHHHHHHHhhccCCCHHHHH
Confidence            8888888889998888888888888743221  0  12456677777776544  788889999988864    223333


Q ss_pred             HHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCc-----------------HHHHHHHHH-------c----CCh
Q 021317          169 AITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCR-----------------DKYRQLILK-------E----GAI  220 (314)
Q Consensus       169 ~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~-----------------~~~~~~i~~-------~----g~v  220 (314)
                      .+.  ....+.|+.++. .++.+|..|+.+|..+....+                 ...|..-.+       .    ..+
T Consensus       279 ~~~--~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv  355 (591)
T 2vgl_B          279 MLL--KKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVL  355 (591)
T ss_dssp             HHH--HHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHH
T ss_pred             HHH--HHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHH
Confidence            333  345677776654 677888888888887764211                 112222111       1    134


Q ss_pred             HHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 021317          221 PGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSME  293 (314)
Q Consensus       221 ~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~~  293 (314)
                      +.|..++++.++..+..+++.+..++..-..  .....++.++..+.   +..+.....+...++.+.+..++
T Consensus       356 ~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~--~~~~~v~~Ll~ll~---~~~~~v~~e~i~~l~~ii~~~p~  423 (591)
T 2vgl_B          356 AELKEYATEVDVDFVRKAVRAIGRCAIKVEQ--SAERCVSTLLDLIQ---TKVNYVVQEAIVVIRDIFRKYPN  423 (591)
T ss_dssp             HHHHHHTTSSCHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHH---TCCHHHHHHHHHHHHHHHHHSCS
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHhChh--HHHHHHHHHHHHHc---ccchHHHHHHHHHHHHHHHHCcc
Confidence            5566677778899999999999999875432  22445666665554   33466777777788888765544

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.06  E-value=3.9e-10  Score=110.69  Aligned_cols=189  Identities=12%  Similarity=0.014  Sum_probs=143.6

Q ss_pred             eeccccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHH-HHhcCCCHHHHHHHHHHHHHhccCC--CChhHHhhcC
Q 021317           14 VFMETYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLV-ELLKFQNGTLRELAAAAILTLSAAA--PNKPAIAASG   90 (314)
Q Consensus        14 v~~l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv-~lL~~~~~~~~~~a~~~L~~La~~~--~~~~~i~~~g   90 (314)
                      +..|++++++.|..|+.+|.+...++.++..+...|+|..++ .+|.+++.+++..|+.+|+||+.+.  +.+..+...|
T Consensus        40 l~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~  119 (684)
T 4gmo_A           40 LKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRLD  119 (684)
T ss_dssp             HHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTT
T ss_pred             HHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHcC
Confidence            356899999999999999995567899999999999988765 5688889999999999999999864  5577788999


Q ss_pred             cHHHHHHHhccCC---------------------HHHHHHHHHHHHHhc-CCCCCchhhhhcCCcHHHHHHhhccC-Cch
Q 021317           91 AAPLLVQILHSGS---------------------VQGRVDAVTALHYLS-TCKENSSPILDATAVPPLINLLKDCK-KYS  147 (314)
Q Consensus        91 ~l~~Lv~lL~~~~---------------------~~~~~~a~~~L~nLs-~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~  147 (314)
                      ++++|..+|+...                     ..+..+++.+|.+|+ .+++....+.+.+.++.|+..|.+.+ ...
T Consensus       120 il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~  199 (684)
T 4gmo_A          120 VLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISADIAPQ  199 (684)
T ss_dssp             HHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCH
T ss_pred             hHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCCCcH
Confidence            9999999986421                     124457888999999 45556667888899999999986543 234


Q ss_pred             HHHHHHHHHHHHhcCChh-hhhHHHhccCCHH--HHHHHhhcCCHHHHHHHHHHHHHhh
Q 021317          148 KFAEKATALLEILSSSEE-GRIAITNSDGGIL--TLVETVEDGSLVSTQHAVGALLSLC  203 (314)
Q Consensus       148 ~~~~~a~~~L~~L~~~~~-~~~~i~~~~g~v~--~Lv~ll~~~~~~~~~~A~~~L~~L~  203 (314)
                      ++...++.+|.+++.+.. ....+. +.|...  .++..+...+...+..++++|.|+.
T Consensus       200 ~v~~~a~~~L~~ls~dn~~~~~~i~-~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~  257 (684)
T 4gmo_A          200 DIYEEAISCLTTLSEDNLKVGQAIT-DDQETHVYDVLLKLATGTDPRAVMACGVLHNVF  257 (684)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHH-TCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHH-hcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence            788899999999998854 445555 555432  2222223344445678889999974

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.94  E-value=1.1e-08  Score=94.85  Aligned_cols=267  Identities=11%  Similarity=0.060  Sum_probs=173.3

Q ss_pred             eeccccC--CHHHHHHHHHHhH-hhccC-chhHHHHHhcCCcHHHHHHhcCC--CHHHHHHHHHHHHHhccCCC-Ch-hH
Q 021317           14 VFMETYF--EGYARRLNLMGPL-WQLSK-TRNKVKIATAGAIPPLVELLKFQ--NGTLRELAAAAILTLSAAAP-NK-PA   85 (314)
Q Consensus        14 v~~l~~~--~~~~~~~a~~al~-l~~~~-~~~~~~l~~~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~La~~~~-~~-~~   85 (314)
                      +..+.++  ++..++.++.++. ++... ++.-... -...++.++..+.++  ++.+|..|+.++.++...-. +- ..
T Consensus       134 ~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~  212 (462)
T 1ibr_B          134 VANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKE  212 (462)
T ss_dssp             HHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGG-HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSH
T ss_pred             HHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            4556677  8999999999998 55432 2111111 124678888889877  78999999999998654211 00 00


Q ss_pred             HhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCc-hhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCCh
Q 021317           86 IAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENS-SPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE  164 (314)
Q Consensus        86 i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~  164 (314)
                      ....-.++.+.+.+.++++.++..++.+|..++...... ......+.++.++..+.+.+  ..++..++..+..++...
T Consensus       213 ~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~v~~~a~~~l~~~~~~~  290 (462)
T 1ibr_B          213 SERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDI--DEVALQGIEFWSNVCDEE  290 (462)
T ss_dssp             HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSS--HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHH
Confidence            011114666667778889999999999999998433211 11111256777777776643  378888888887776543


Q ss_pred             hhh------------------hHHHh--ccCCHHHHHHHhhcC-------CHHHHHHHHHHHHHhhccCcHHHHHHHHHc
Q 021317          165 EGR------------------IAITN--SDGGILTLVETVEDG-------SLVSTQHAVGALLSLCQSCRDKYRQLILKE  217 (314)
Q Consensus       165 ~~~------------------~~i~~--~~g~v~~Lv~ll~~~-------~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~  217 (314)
                      ...                  ..++.  -...+|.++..+.+.       +..++..|+.+|..++...++    .+. .
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~----~~~-~  365 (462)
T 1ibr_B          291 MDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED----DIV-P  365 (462)
T ss_dssp             HHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT----THH-H
T ss_pred             HHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH----HHH-H
Confidence            110                  01110  023566677777432       346889999999999876432    111 2


Q ss_pred             CChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcc---hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Q 021317          218 GAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLS---SSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRS  291 (314)
Q Consensus       218 g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~---~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s  291 (314)
                      ..++.+.+.+.+.+..+|+.|+.++..++.+...+.+.   ..+++.++..+.   +..++.+..|..+|.++....
T Consensus       366 ~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~---d~~~~Vr~~a~~~l~~~~~~~  439 (462)
T 1ibr_B          366 HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMK---DPSVVVRDTAAWTVGRICELL  439 (462)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGG---CSCHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhc
Confidence            45677777888889999999999999999765422221   345555554443   666899999999999999754

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.93  E-value=4.3e-08  Score=98.22  Aligned_cols=269  Identities=11%  Similarity=0.054  Sum_probs=175.6

Q ss_pred             cccC--CHHHHHHHHHHhH-hhccCchhH-HHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCC-ChhHHhhcCc
Q 021317           17 ETYF--EGYARRLNLMGPL-WQLSKTRNK-VKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAASGA   91 (314)
Q Consensus        17 l~~~--~~~~~~~a~~al~-l~~~~~~~~-~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~-~~~~i~~~g~   91 (314)
                      +.++  ++.+|..++.++. ++.....+- ........++.+...+.+++++++..++.+|..+..... .-........
T Consensus       181 l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l  260 (876)
T 1qgr_A          181 MRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPAL  260 (876)
T ss_dssp             HSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTH
T ss_pred             hcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            4444  6889999999988 443222110 011112356677777778889999999999999886422 1111223478


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHhcCCC------------------CCchhhhh---cCCcHHHHHHhhcc-----CC
Q 021317           92 APLLVQILHSGSVQGRVDAVTALHYLSTCK------------------ENSSPILD---ATAVPPLINLLKDC-----KK  145 (314)
Q Consensus        92 l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~------------------~~~~~i~~---~g~i~~Lv~lL~~~-----~~  145 (314)
                      ++.++..+.+.++.++..++..+.+++...                  ........   ...++.++..+...     ++
T Consensus       261 ~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~  340 (876)
T 1qgr_A          261 FAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDD  340 (876)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTT
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhccccccccc
Confidence            888888888889999999999998887431                  00001111   23566777777532     12


Q ss_pred             chHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCc-HHHHHHHHHcCChHHHH
Q 021317          146 YSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCR-DKYRQLILKEGAIPGLL  224 (314)
Q Consensus       146 ~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~-~~~~~~i~~~g~v~~Lv  224 (314)
                      +..++..+..++..++....  ..++  ...++.+...+.+.+..+|+.|+.+|..++.... +.....+  ...++.|+
T Consensus       341 ~~~~r~~a~~~l~~l~~~~~--~~~~--~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~--~~~l~~l~  414 (876)
T 1qgr_A          341 DWNPCKAAGVCLMLLATCCE--DDIV--PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLI  414 (876)
T ss_dssp             CCCHHHHHHHHHHHHHHHHG--GGGH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHCc--HhhH--HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHH
Confidence            23567778888877765433  1233  2466777778888889999999999999997654 2222222  34788999


Q ss_pred             HhhhcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Q 021317          225 RLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRS  291 (314)
Q Consensus       225 ~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s  291 (314)
                      ..+.+.++.++..|+++|.+++............++.+++.+......+++.++.|..+|.++....
T Consensus       415 ~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~v~~~a~~al~~l~~~~  481 (876)
T 1qgr_A          415 ELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAA  481 (876)
T ss_dssp             HHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999998764332111222333444333222224788999999999998653

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.90  E-value=5.4e-09  Score=96.92  Aligned_cols=246  Identities=11%  Similarity=0.043  Sum_probs=161.7

Q ss_pred             eccccC--CHHHHHHHHHHhH-hhccCchhH-HHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCC--hhHHhh
Q 021317           15 FMETYF--EGYARRLNLMGPL-WQLSKTRNK-VKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPN--KPAIAA   88 (314)
Q Consensus        15 ~~l~~~--~~~~~~~a~~al~-l~~~~~~~~-~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~--~~~i~~   88 (314)
                      ..+..+  ++.+|..|+.++. .+...+++- ......-.++.+...+.+++++++..++.+|..++.....  ...+ .
T Consensus       179 ~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~-~  257 (462)
T 1ibr_B          179 QGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-G  257 (462)
T ss_dssp             HHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTT-T
T ss_pred             HHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence            345555  6899999999987 332111110 0111111356666777788999999999999998864321  1222 1


Q ss_pred             cCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC------------------CCchhhhh---cCCcHHHHHHhhcc----
Q 021317           89 SGAAPLLVQILHSGSVQGRVDAVTALHYLSTCK------------------ENSSPILD---ATAVPPLINLLKDC----  143 (314)
Q Consensus        89 ~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~------------------~~~~~i~~---~g~i~~Lv~lL~~~----  143 (314)
                      .+.++.++..+.+.++.++..++..+.+++...                  .....+.+   ...+|.++..+...    
T Consensus       258 ~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~  337 (462)
T 1ibr_B          258 PALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDEND  337 (462)
T ss_dssp             TTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSC
T ss_pred             HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhccccc
Confidence            277888888899999999999999998887432                  01111222   23566666777542    


Q ss_pred             -CCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHH-HHHHHHHcCChH
Q 021317          144 -KKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDK-YRQLILKEGAIP  221 (314)
Q Consensus       144 -~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~-~~~~i~~~g~v~  221 (314)
                       ++...++..|..+|..++....  ..+.  ...++.+...+.+.+..+++.|+.+|..++.+...+ .+..+  ...++
T Consensus       338 ~~~~~~~r~~a~~~L~~l~~~~~--~~~~--~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~  411 (462)
T 1ibr_B          338 DDDDWNPCKAAGVCLMLLATCCE--DDIV--PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMP  411 (462)
T ss_dssp             CTTCCSHHHHHHHHHHHHHHHTT--TTHH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHH
T ss_pred             ccccchHHHHHHHHHHHHHHhcc--HHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHH
Confidence             1122567788888888776533  2333  346778888888888999999999999999754311 11111  46889


Q ss_pred             HHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHh
Q 021317          222 GLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIA  267 (314)
Q Consensus       222 ~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~  267 (314)
                      .|+..+.+.++.+|..|+++|.+++............++.+++.|.
T Consensus       412 ~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll  457 (462)
T 1ibr_B          412 TLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLI  457 (462)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHH
Confidence            9999999999999999999999998755432222345566666554

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.75  E-value=2.8e-07  Score=92.12  Aligned_cols=263  Identities=14%  Similarity=0.102  Sum_probs=172.4

Q ss_pred             cccC--CHHHHHHHHHHhH-hhccCchhH-HHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC-C-ChhHHhhcC
Q 021317           17 ETYF--EGYARRLNLMGPL-WQLSKTRNK-VKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA-P-NKPAIAASG   90 (314)
Q Consensus        17 l~~~--~~~~~~~a~~al~-l~~~~~~~~-~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~-~~~~i~~~g   90 (314)
                      +.++  ++.+|..++.++. .+..-..+- ........++.|...+.+++++++..++.+|..++... + ....+ ...
T Consensus       188 l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l-~~~  266 (861)
T 2bpt_A          188 AQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYM-EQA  266 (861)
T ss_dssp             HSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHH-HHT
T ss_pred             hcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence            3444  7899999999987 432211110 00011224566777778889999999999999987632 1 12222 126


Q ss_pred             cHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC--------------Cchhhhh---cCCcHHHHHHhhccC-----CchH
Q 021317           91 AAPLLVQILHSGSVQGRVDAVTALHYLSTCKE--------------NSSPILD---ATAVPPLINLLKDCK-----KYSK  148 (314)
Q Consensus        91 ~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~--------------~~~~i~~---~g~i~~Lv~lL~~~~-----~~~~  148 (314)
                      .++.+...+.+.++.++..++..+..++....              ....+..   ...++.++..+....     ++..
T Consensus       267 l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~  346 (861)
T 2bpt_A          267 LYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWN  346 (861)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCH
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCc
Confidence            67777888888899999999999998875321              0111111   346777877776521     1236


Q ss_pred             HHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCc-HHHHHHHHHcCChHHHHHhh
Q 021317          149 FAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCR-DKYRQLILKEGAIPGLLRLT  227 (314)
Q Consensus       149 ~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~-~~~~~~i~~~g~v~~Lv~ll  227 (314)
                      ++..+..+|..++....  ..++  ...++.+...+.+.+...++.|+.+|..++.... +.....+  ...++.|+..+
T Consensus       347 ~r~~a~~~L~~l~~~~~--~~~~--~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l--~~il~~l~~~l  420 (861)
T 2bpt_A          347 VSMSAGACLQLFAQNCG--NHIL--EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV--HQALPSILNLM  420 (861)
T ss_dssp             HHHHHHHHHHHHHHHHG--GGGH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHHcc--HhHH--HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHc
Confidence            77788888888776432  2222  2356677777778888999999999999997653 2222222  24788889989


Q ss_pred             hcCCHHHHHHHHHHHHHhhcCCchhh----cchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Q 021317          228 VEGTFEAQERARTLLDLLRDTPQEKR----LSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR  290 (314)
Q Consensus       228 ~~~~~~~~~~A~~~L~~l~~~~~~~~----~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~  290 (314)
                      .+.++.++..+++++..++.......    .-..+++.++..+.   +. ++.+..|..+|.++.+.
T Consensus       421 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~---~~-~~v~~~a~~al~~l~~~  483 (861)
T 2bpt_A          421 NDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQ---DH-PKVATNCSWTIINLVEQ  483 (861)
T ss_dssp             GCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHT---SC-HHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhc---cC-hHHHHHHHHHHHHHHHh
Confidence            99999999999999999886432211    12334444444442   33 78889999999988864

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.71  E-value=5.5e-07  Score=87.29  Aligned_cols=249  Identities=14%  Similarity=0.065  Sum_probs=158.7

Q ss_pred             eccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHH
Q 021317           15 FMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAP   93 (314)
Q Consensus        15 ~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~   93 (314)
                      .++.+++...++-+-.++. ++..+++-..     -++..|.+-|.++++.++..|+++|+++...     .+. ...++
T Consensus        77 k~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~-----l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~-----~~~-~~l~~  145 (618)
T 1w63_A           77 KLIASQKFTDKRIGYLGAMLLLDERQDVHL-----LMTNCIKNDLNHSTQFVQGLALCTLGCMGSS-----EMC-RDLAG  145 (618)
T ss_dssp             HHHHSSSHHHHHHHHHHHHHHCCCCHHHHH-----HHHHHHHHHHSCSSSHHHHHHHHHHHHHCCH-----HHH-HHHHH
T ss_pred             HHHcCCchHHHHHHHHHHHHHhCCCcHHHH-----HHHHHHHHhcCCCCHhHHHHHHHHHHhcCCH-----HHH-HHHHH
Confidence            3456777777777777777 4444433211     2345678888899999999999999999731     222 45688


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHHhcC-CCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHh
Q 021317           94 LLVQILHSGSVQGRVDAVTALHYLST-CKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITN  172 (314)
Q Consensus        94 ~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~  172 (314)
                      .+.++|.++++.+|..|+.++.++.. +++.    + .+.++.+..++.+.+  +.++..|+.+|..++.......... 
T Consensus       146 ~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~----v-~~~~~~l~~lL~D~d--~~V~~~Al~~L~~i~~~~~~~~~~~-  217 (618)
T 1w63_A          146 EVEKLLKTSNSYLRKKAALCAVHVIRKVPEL----M-EMFLPATKNLLNEKN--HGVLHTSVVLLTEMCERSPDMLAHF-  217 (618)
T ss_dssp             HHHHHHHSCCHHHHHHHHHHHHHHHHHCGGG----G-GGGGGGTTTSTTCCC--HHHHHHHHHHHHHHCCSHHHHHHHH-
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHChHH----H-HHHHHHHHHHhCCCC--HhHHHHHHHHHHHHHHhChHHHHHH-
Confidence            99999999999999999999999984 4332    2 257777888887754  4788899999999987754322222 


Q ss_pred             ccCCHHHHHHHhhc---------------CCHHHHHHHHHHHHHhhccCcHHHHHH-------HH---------------
Q 021317          173 SDGGILTLVETVED---------------GSLVSTQHAVGALLSLCQSCRDKYRQL-------IL---------------  215 (314)
Q Consensus       173 ~~g~v~~Lv~ll~~---------------~~~~~~~~A~~~L~~L~~~~~~~~~~~-------i~---------------  215 (314)
                       ...++.++.+|.+               .++..+...+.+|..++..+++ ..+.       +.               
T Consensus       218 -~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~-~~~~~~~~L~~l~~~~~~~~~~~~aV~~  295 (618)
T 1w63_A          218 -RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDD-SSEAMNDILAQVATNTETSKNVGNAILY  295 (618)
T ss_dssp             -HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHH-HHHTTHHHHHHHHHTSCCSSTHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHHhccccccchHHHHHH
Confidence             2477888877753               3677777788888887765432 1111       00               


Q ss_pred             -------H--------cCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhcCCCHHHHHHHH
Q 021317          216 -------K--------EGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETA  280 (314)
Q Consensus       216 -------~--------~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A  280 (314)
                             .        ..+++.|..++.+.++.+|..|..+|..+....+. .+. .....++..+   .+.+...+.+|
T Consensus       296 ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~-~~~-~~~~~i~~~l---~d~d~~Ir~~a  370 (618)
T 1w63_A          296 ETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHN-AVQ-RHRSTIVDCL---KDLDVSIKRRA  370 (618)
T ss_dssp             HHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH-HHG-GGHHHHHHGG---GSSCHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH-HHH-HHHHHHHHHc---cCCChhHHHHH
Confidence                   0        02455666666667777777777777766643321 111 1111222222   23345566666


Q ss_pred             HHHHHHHHH
Q 021317          281 KRLLQDMVQ  289 (314)
Q Consensus       281 ~~~L~~l~~  289 (314)
                      ..+|..+..
T Consensus       371 lelL~~l~~  379 (618)
T 1w63_A          371 MELSFALVN  379 (618)
T ss_dssp             HHHHHHHCC
T ss_pred             HHHHHHHcc
Confidence            666666553

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.68  E-value=1.3e-07  Score=94.65  Aligned_cols=267  Identities=11%  Similarity=0.031  Sum_probs=169.7

Q ss_pred             eccccCCHHHHHHHHHHhH-hhccCc-hhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCh--hHHhhcC
Q 021317           15 FMETYFEGYARRLNLMGPL-WQLSKT-RNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNK--PAIAASG   90 (314)
Q Consensus        15 ~~l~~~~~~~~~~a~~al~-l~~~~~-~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~--~~i~~~g   90 (314)
                      ..+.++++..|+.|+.++. ++.... +.-.... ...++.++..+.++++.++..+++++..++..-...  ..-.-..
T Consensus       376 ~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~  454 (861)
T 2bpt_A          376 QNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPG  454 (861)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHH
T ss_pred             HHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHH
Confidence            3456788999999999999 554322 2112222 246888999999999999999999999988631100  0001235


Q ss_pred             cHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC--Cchhhhh--cCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChh-
Q 021317           91 AAPLLVQILHSGSVQGRVDAVTALHYLSTCKE--NSSPILD--ATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEE-  165 (314)
Q Consensus        91 ~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~--~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~-  165 (314)
                      .++.++..+.++ +.++..++++|.+++..-.  ....+..  ...++.|+.++.+.+.+..++..+..++..++.... 
T Consensus       455 ~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~  533 (861)
T 2bpt_A          455 VVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATD  533 (861)
T ss_dssp             HHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCG
T ss_pred             HHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcch
Confidence            678888888776 8999999999999985321  1111211  346778888887644334677788888887765422 


Q ss_pred             hhhHHHhccCCHHHHHHHhhcC---------------CHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcC
Q 021317          166 GRIAITNSDGGILTLVETVEDG---------------SLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEG  230 (314)
Q Consensus       166 ~~~~i~~~~g~v~~Lv~ll~~~---------------~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~  230 (314)
                      .....+  ...++.++..+.+.               ...++..++.+|.+++...++.....+  ...++.++..+++.
T Consensus       534 ~~~~~~--~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~  609 (861)
T 2bpt_A          534 TVAETS--ASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA--DMLMGLFFRLLEKK  609 (861)
T ss_dssp             GGHHHH--HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH--HHHHHHHHHHHHST
T ss_pred             hhHHHH--HHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH--HHHHHHHHHHHccC
Confidence            222222  23666777776531               345678899999998865532111111  23566777778777


Q ss_pred             CH-HHHHHHHHHHHHhhcCCchhhc--chhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Q 021317          231 TF-EAQERARTLLDLLRDTPQEKRL--SSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR  290 (314)
Q Consensus       231 ~~-~~~~~A~~~L~~l~~~~~~~~~--~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~  290 (314)
                      ++ .+++.+..++..++........  -...++.++..+.   +.+.+.+..|..++..+.+.
T Consensus       610 ~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~---~~~~~vr~~a~~~l~~l~~~  669 (861)
T 2bpt_A          610 DSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALN---QVDSPVSITAVGFIADISNS  669 (861)
T ss_dssp             TGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHH---CTTSHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHHHH
Confidence            66 8899999999988764433221  1234444444442   33456778888888877753

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.67  E-value=1.1e-06  Score=85.27  Aligned_cols=246  Identities=12%  Similarity=0.059  Sum_probs=152.0

Q ss_pred             eccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHH
Q 021317           15 FMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAP   93 (314)
Q Consensus        15 ~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~   93 (314)
                      ..+.+.++.+|+.|+.++. +...+++..     .++++.+..+|.+.++.++..|+.+|..++..+..... .-...+|
T Consensus       149 ~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~-~~~~~v~  222 (618)
T 1w63_A          149 KLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLA-HFRKLVP  222 (618)
T ss_dssp             HHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHH-HHHTTHH
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHH-HHHHHHH
Confidence            3456677888888888877 555555422     25677777888878888888888888888764311101 1136788


Q ss_pred             HHHHHhcc---------------CCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhcc----CCchHHHHHHH
Q 021317           94 LLVQILHS---------------GSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDC----KKYSKFAEKAT  154 (314)
Q Consensus        94 ~Lv~lL~~---------------~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~----~~~~~~~~~a~  154 (314)
                      .++++|.+               .++-.+...+.+|..++..++.    .....++.|..++...    +....+...|.
T Consensus       223 ~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~----~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~  298 (618)
T 1w63_A          223 QLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDD----SSEAMNDILAQVATNTETSKNVGNAILYETV  298 (618)
T ss_dssp             HHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHH----HHHTTHHHHHHHHHTSCCSSTHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence            88888764               4788888899999999865321    1123445555555321    11225666677


Q ss_pred             HHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHH
Q 021317          155 ALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEA  234 (314)
Q Consensus       155 ~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~  234 (314)
                      .++..+...+..+      ..+++.|..++.+.++.++..|+.+|..++...+.     ++. .....++..+.+.+..+
T Consensus       299 ~~i~~l~~~~~l~------~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~-----~~~-~~~~~i~~~l~d~d~~I  366 (618)
T 1w63_A          299 LTIMDIKSESGLR------VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHN-----AVQ-RHRSTIVDCLKDLDVSI  366 (618)
T ss_dssp             HHHHHSCCCHHHH------HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH-----HHG-GGHHHHHHGGGSSCHHH
T ss_pred             HHHHhcCCCHHHH------HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH-----HHH-HHHHHHHHHccCCChhH
Confidence            7777765533222      13566777888877788888888888888755321     121 23456666677777888


Q ss_pred             HHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q 021317          235 QERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQ  289 (314)
Q Consensus       235 ~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~  289 (314)
                      +..|..+|..++...+-    ..+++.+...+.   +.+++.+..+...+..+..
T Consensus       367 r~~alelL~~l~~~~nv----~~iv~eL~~~l~---~~d~e~r~~~v~~I~~la~  414 (618)
T 1w63_A          367 KRRAMELSFALVNGNNI----RGMMKELLYFLD---SCEPEFKADCASGIFLAAE  414 (618)
T ss_dssp             HHHHHHHHHHHCCSSST----HHHHHHHHHHHH---HCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccccH----HHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHH
Confidence            88888888777765431    112233333333   2235566666666666664

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.65  E-value=2.3e-06  Score=70.97  Aligned_cols=222  Identities=18%  Similarity=0.131  Sum_probs=160.8

Q ss_pred             CCcHHHHHHhcCCCHHHHHHHHHHHHHhccC-CCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-Cchh
Q 021317           49 GAIPPLVELLKFQNGTLRELAAAAILTLSAA-APNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKE-NSSP  126 (314)
Q Consensus        49 g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~-~~~~  126 (314)
                      +.+..|..+|...|+.++.+++.+|..+-.. +.......-...++.++.++.+.+..+...|+.+|..|-.+.+ ....
T Consensus        33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~  112 (265)
T 3b2a_A           33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT  112 (265)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred             hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence            4567889999999999999999999998765 3333333345789999999999999999999999999986543 3444


Q ss_pred             hhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccC
Q 021317          127 ILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSC  206 (314)
Q Consensus       127 i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~  206 (314)
                      +..  .+..|.+++.++++  -+...+...+..+......+       +.+..+.+++++.+..++..++.+|.+++...
T Consensus       113 y~K--l~~aL~dlik~~~~--il~~eaae~Lgklkv~~~~~-------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S  181 (265)
T 3b2a_A          113 FLK--AAKTLVSLLESPDD--MMRIETIDVLSKLQPLEDSK-------LVRTYINELVVSPDLYTKVAGFCLFLNMLNSS  181 (265)
T ss_dssp             HHH--HHHHHHHHTTSCCH--HHHHHHHHHHHHCCBSCCCH-------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred             HHH--HHHHHHHHhcCCCc--hHHHHHHHHhCcCCcccchH-------HHHHHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence            444  56778888887644  77888888888873222222       34457888888899999999999999999865


Q ss_pred             cHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCC-chhhc-chhhhHHHHHHHhhcCCCHHHHHHHHHHHH
Q 021317          207 RDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP-QEKRL-SSSVLEKIVYDIAARVDGADKAAETAKRLL  284 (314)
Q Consensus       207 ~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~-~~~~~-~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L  284 (314)
                      .+  ...+  .+.+.-+-.++++.|+.+++.|..+|..+...+ .+... +...+-..|..|. +..|.+..+.+|+-.-
T Consensus       182 ~D--~~i~--~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~-~~~~~~~~~~ka~~v~  256 (265)
T 3b2a_A          182 AD--SGHL--TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLV-YREGAPIIRLKAKKVS  256 (265)
T ss_dssp             SS--CCCG--GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGG-GCSSCHHHHHHHHHHH
T ss_pred             CC--HHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHH-HhcCChhHHHHHHHHH
Confidence            32  1111  135555667888999999999999998887766 33222 3334444555555 3456688888887655


Q ss_pred             HH
Q 021317          285 QD  286 (314)
Q Consensus       285 ~~  286 (314)
                      ..
T Consensus       257 ~~  258 (265)
T 3b2a_A          257 DL  258 (265)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.61  E-value=2.6e-07  Score=92.49  Aligned_cols=223  Identities=13%  Similarity=0.077  Sum_probs=151.2

Q ss_pred             ccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC--------------
Q 021317           16 METYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA--------------   80 (314)
Q Consensus        16 ~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~--------------   80 (314)
                      .+.+++++++..++.++. ++...+..-........++.++..+.+.+++++..++..+.+++...              
T Consensus       225 ~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~  304 (876)
T 1qgr_A          225 ATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQG  304 (876)
T ss_dssp             HTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccC
Confidence            346778899999999988 66554443233333467888888888888999999998888886531              


Q ss_pred             -----CChhHHh--hcCcHHHHHHHhcc-------CCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCc
Q 021317           81 -----PNKPAIA--ASGAAPLLVQILHS-------GSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKY  146 (314)
Q Consensus        81 -----~~~~~i~--~~g~l~~Lv~lL~~-------~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~  146 (314)
                           .....+.  -...+|.+++.|..       .+..+|..|..+|..++..-.  ..++. ..++.+...+.+.  +
T Consensus       305 ~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~--~~~~~-~~l~~l~~~l~~~--~  379 (876)
T 1qgr_A          305 RPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDIVP-HVLPFIKEHIKNP--D  379 (876)
T ss_dssp             SCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG--GGGHH-HHHHHHHHHTTCS--S
T ss_pred             CCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc--HhhHH-HHHHHHHHHccCC--C
Confidence                 0111110  13456777777752       345788899999988874322  12222 3555566666554  3


Q ss_pred             hHHHHHHHHHHHHhcCChh--hhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHH--HHHHHHcCChHH
Q 021317          147 SKFAEKATALLEILSSSEE--GRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKY--RQLILKEGAIPG  222 (314)
Q Consensus       147 ~~~~~~a~~~L~~L~~~~~--~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~--~~~i~~~g~v~~  222 (314)
                      ..++..++.++..++....  ......  ...++.++..+.+.++.++..|+++|.+++...++..  ...+  ...++.
T Consensus       380 ~~~r~~a~~~l~~i~~~~~~~~~~~~~--~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l--~~~l~~  455 (876)
T 1qgr_A          380 WRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL--APLLQC  455 (876)
T ss_dssp             HHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH--HHHHHH
T ss_pred             hHHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH--HHHHHH
Confidence            4888999999999987643  222232  3478999999999899999999999999997643210  0111  235677


Q ss_pred             HHHhhhcCCHHHHHHHHHHHHHhhcC
Q 021317          223 LLRLTVEGTFEAQERARTLLDLLRDT  248 (314)
Q Consensus       223 Lv~ll~~~~~~~~~~A~~~L~~l~~~  248 (314)
                      |+..+.+. +.++..|+++|.+++..
T Consensus       456 l~~~l~~~-~~v~~~a~~al~~l~~~  480 (876)
T 1qgr_A          456 LIEGLSAE-PRVASNVCWAFSSLAEA  480 (876)
T ss_dssp             HHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence            77777764 89999999999998864

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.53  E-value=7e-07  Score=75.94  Aligned_cols=183  Identities=13%  Similarity=0.100  Sum_probs=135.3

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhccC-CCChhHHhhcCcHHHHHHHhc-cCCHHHHHHHHHHHHHhcCCCCCchhhhh
Q 021317           52 PPLVELLKFQNGTLRELAAAAILTLSAA-APNKPAIAASGAAPLLVQILH-SGSVQGRVDAVTALHYLSTCKENSSPILD  129 (314)
Q Consensus        52 ~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~i~~~g~l~~Lv~lL~-~~~~~~~~~a~~~L~nLs~~~~~~~~i~~  129 (314)
                      +.+.+.+.+.+...|..|+..|..+... +.....- -...++.|..++. +.+..++..|+.+|..|+..-  ...+..
T Consensus        18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l--~~~~~~   94 (242)
T 2qk2_A           18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGL--AKRFSN   94 (242)
T ss_dssp             TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH--GGGGHH
T ss_pred             HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH--hhhHHH
Confidence            4588888899999999999999998764 3211100 1245778888894 899999999999999999432  112222


Q ss_pred             --cCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcc-C
Q 021317          130 --ATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQS-C  206 (314)
Q Consensus       130 --~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~-~  206 (314)
                        ...++.++..+.+.+.  .+++.+..+|.++......       ...++.+...+++.++.++..++..|..+... .
T Consensus        95 ~~~~ilp~ll~~l~d~~~--~vr~~a~~aL~~~~~~~~~-------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~  165 (242)
T 2qk2_A           95 YASACVPSLLEKFKEKKP--NVVTALREAIDAIYASTSL-------EAQQESIVESLSNKNPSVKSETALFIARALTRTQ  165 (242)
T ss_dssp             HHHHHHHHHHHGGGCCCH--HHHHHHHHHHHHHHTTSCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence              3478889999888644  8889999999988765321       12567888889988999999999999996433 2


Q ss_pred             cH-HHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 021317          207 RD-KYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDT  248 (314)
Q Consensus       207 ~~-~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~  248 (314)
                      ++ .....+  ...++.|+.++.+.++++|..|..++..++..
T Consensus       166 ~~~~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~  206 (242)
T 2qk2_A          166 PTALNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL  206 (242)
T ss_dssp             GGGCCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence            21 112222  24788999999999999999999999998753

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.47  E-value=4.9e-06  Score=70.60  Aligned_cols=184  Identities=10%  Similarity=0.057  Sum_probs=129.1

Q ss_pred             HHHHHhccCCHHHHHHHHHHHHHhcCC-CCCchhhhhcCCcHHHHHHhh-ccCCchHHHHHHHHHHHHhcCChhh-hhHH
Q 021317           94 LLVQILHSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLK-DCKKYSKFAEKATALLEILSSSEEG-RIAI  170 (314)
Q Consensus        94 ~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~~~a~~~L~~L~~~~~~-~~~i  170 (314)
                      .+.+.+.+.+...|..++..|..+... +.....-. ...++.|...+. +.  +..++..|+.++..|+..-.. -...
T Consensus        19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~--~~~V~~~a~~~l~~la~~l~~~~~~~   95 (242)
T 2qk2_A           19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDS--NVVLVAMAGKCLALLAKGLAKRFSNY   95 (242)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred             HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            477888899999999999999999854 33111111 235667777774 54  347888999999988854221 1122


Q ss_pred             HhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc-CC
Q 021317          171 TNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRD-TP  249 (314)
Q Consensus       171 ~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~-~~  249 (314)
                      +  ...++.++..+++.+..+++.|..+|.+++...+  . .     ..++.|...+.+.++.+|..+...|..+.. +.
T Consensus        96 ~--~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~-~-----~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~  165 (242)
T 2qk2_A           96 A--SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--L-E-----AQQESIVESLSNKNPSVKSETALFIARALTRTQ  165 (242)
T ss_dssp             H--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--H-H-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCC
T ss_pred             H--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--H-H-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence            2  3478999999999999999999999999987542  1 1     257778888899999999999999998654 33


Q ss_pred             chhhcc---hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 021317          250 QEKRLS---SSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSME  293 (314)
Q Consensus       250 ~~~~~~---~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~~  293 (314)
                      +.....   ...++.++..+   .|...+.+..|..++..+.+.-.+
T Consensus       166 ~~~~~~~~l~~l~p~l~~~l---~D~~~~VR~~A~~~l~~l~~~vg~  209 (242)
T 2qk2_A          166 PTALNKKLLKLLTTSLVKTL---NEPDPTVRDSSAEALGTLIKLMGD  209 (242)
T ss_dssp             GGGCCHHHHHHHHHHHHHHH---TSSCHHHHHHHHHHHHHHHHHHCH
T ss_pred             CCCccHHHHHHHHHHHHHHh---cCCChHHHHHHHHHHHHHHHHcCH
Confidence            321111   23444444344   366788999999999998865433

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=98.44  E-value=3.9e-07  Score=95.03  Aligned_cols=262  Identities=13%  Similarity=0.071  Sum_probs=170.6

Q ss_pred             eccccCCHHHHHHHHHHhHhhccCchh-HHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHH
Q 021317           15 FMETYFEGYARRLNLMGPLWQLSKTRN-KVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAP   93 (314)
Q Consensus        15 ~~l~~~~~~~~~~a~~al~l~~~~~~~-~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~   93 (314)
                      ..+.++|..+|..|...|......+.. -..-.....++.+++.|.++++.+|..|+.+|.+++..-.. ..  -...++
T Consensus        13 ~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~--~~~i~~   89 (1230)
T 1u6g_C           13 EKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQ--VETIVD   89 (1230)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HH--HHHHHH
T ss_pred             HhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HH--HHHHHH
Confidence            446788999999999888732222111 00001124567788999888999999999999999864221 11  134677


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHHhcCCCCCc----hhh--hhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhh-
Q 021317           94 LLVQILHSGSVQGRVDAVTALHYLSTCKENS----SPI--LDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEG-  166 (314)
Q Consensus        94 ~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~----~~i--~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~-  166 (314)
                      .++..|.++++.+|..++.+|..++..-...    ...  .-...+|.|+..+.+. ++..++..|+.++..++..... 
T Consensus        90 ~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~-~~~~~~~~al~~l~~~~~~~~~~  168 (1230)
T 1u6g_C           90 TLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQ-EDVSVQLEALDIMADMLSRQGGL  168 (1230)
T ss_dssp             HHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCC-SCHHHHHHHHHHHHHHHHHTCSS
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHHhHhH
Confidence            8888888888899999999999988432111    011  1245788888888742 2347888999999888742111 


Q ss_pred             hhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCC-HHHHHHHHHHHHHh
Q 021317          167 RIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGT-FEAQERARTLLDLL  245 (314)
Q Consensus       167 ~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~-~~~~~~A~~~L~~l  245 (314)
                      -....  ...++.++..+.+.++.+|..|+.+|..++...+++    + -...++.|++.+.+.+ +..+..++.++..+
T Consensus       169 l~~~~--~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~----~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l  241 (1230)
T 1u6g_C          169 LVNFH--PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI----V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAI  241 (1230)
T ss_dssp             CTTTH--HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC---------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHH
T ss_pred             HHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH----H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHH
Confidence            00111  235667777888888999999999999999765321    1 1245788888666543 46677788888888


Q ss_pred             hcCCchhhcc--hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Q 021317          246 RDTPQEKRLS--SSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR  290 (314)
Q Consensus       246 ~~~~~~~~~~--~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~  290 (314)
                      +.........  ...++.++..+.   +.++..++.|..++..+.+.
T Consensus       242 ~~~~~~~~~~~l~~l~~~ll~~l~---d~~~~vR~~a~~~l~~l~~~  285 (1230)
T 1u6g_C          242 SRQAGHRIGEYLEKIIPLVVKFCN---VDDDELREYCIQAFESFVRR  285 (1230)
T ss_dssp             HHHSSGGGTTSCTTHHHHHHHHHS---SCCTTTHHHHHHHHHHHHHC
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHH
Confidence            7654332211  234554544443   44567888888888888764

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=98.44  E-value=1.1e-05  Score=78.25  Aligned_cols=134  Identities=16%  Similarity=0.054  Sum_probs=98.8

Q ss_pred             eccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHH
Q 021317           15 FMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAP   93 (314)
Q Consensus        15 ~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~   93 (314)
                      .++.+++...++.+-.++. .+..+++--..     ++..+.+=|.++++-++-.|+++|+++..     ..+. ...++
T Consensus        81 kl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L-----~iN~l~kDl~~~n~~ir~lALr~L~~i~~-----~e~~-~~l~~  149 (621)
T 2vgl_A           81 NLLSSNRYTEKQIGYLFISVLVNSNSELIRL-----INNAIKNDLASRNPTFMGLALHCIANVGS-----REMA-EAFAG  149 (621)
T ss_dssp             HGGGCSCHHHHHHHHHHHHHSCCCCHHHHHH-----HHHHHHHHHHSCCHHHHHHHHHHHHHHCC-----HHHH-HHHTT
T ss_pred             HHhcCCCHHHHHHHHHHHHHHccCCcHHHHH-----HHHHHHHhcCCCCHHHHHHHHHHhhccCC-----HHHH-HHHHH
Confidence            4667888888888888888 44444432211     23456677788999999999999999954     1222 35678


Q ss_pred             HHHHHh--ccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCC
Q 021317           94 LLVQIL--HSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS  163 (314)
Q Consensus        94 ~Lv~lL--~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~  163 (314)
                      .+.++|  .+.++.+|..|+.++.++....+  ..+-..+.++.+.++|.+.+  +.++..|+.++..++..
T Consensus       150 ~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p--~~~~~~~~~~~l~~lL~d~d--~~V~~~a~~~l~~i~~~  217 (621)
T 2vgl_A          150 EIPKILVAGDTMDSVKQSAALCLLRLYRTSP--DLVPMGDWTSRVVHLLNDQH--LGVVTAATSLITTLAQK  217 (621)
T ss_dssp             HHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG--GGCCCCSCHHHHHHHTTCSC--HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh--hhcCchhHHHHHHHHhCCCC--ccHHHHHHHHHHHHHHh
Confidence            889999  88999999999999999995322  12222578999999997654  37888999998888764

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.43  E-value=3.2e-06  Score=70.14  Aligned_cols=215  Identities=12%  Similarity=0.002  Sum_probs=151.0

Q ss_pred             ceeeccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC-CCChhHHhhc
Q 021317           12 VEVFMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA-APNKPAIAAS   89 (314)
Q Consensus        12 ~~v~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~i~~~   89 (314)
                      +...+|...|+.++..++.+|- +...-+...+...-...++.++.++.+.+..+...|..+|..|-.+ +-......  
T Consensus        37 ~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~--  114 (265)
T 3b2a_A           37 LILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFL--  114 (265)
T ss_dssp             HHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHH--
T ss_pred             HHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHH--
Confidence            3457888999999999999999 6665333333333335689999999999999999999999998764 32333332  


Q ss_pred             CcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhH
Q 021317           90 GAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIA  169 (314)
Q Consensus        90 g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~  169 (314)
                      .....+..++.++++-.+..++..+..|....      ...+++..+..++.+.  +.+++..+++++.|++...+....
T Consensus       115 Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~------~~~~V~~~l~sLl~Sk--d~~vK~agl~~L~eia~~S~D~~i  186 (265)
T 3b2a_A          115 KAAKTLVSLLESPDDMMRIETIDVLSKLQPLE------DSKLVRTYINELVVSP--DLYTKVAGFCLFLNMLNSSADSGH  186 (265)
T ss_dssp             HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSC------CCHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHGGGCSSCCC
T ss_pred             HHHHHHHHHhcCCCchHHHHHHHHhCcCCccc------chHHHHHHHHHHHhCC--ChhHHHHHHHHHHHhhcccCCHHH
Confidence            24567888889999999999999999993221      1234667788888554  448889999999999887654443


Q ss_pred             HHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcH-HHHHHHHHcCChHHHHH-hh-hcCCHHHHHHHHHHH
Q 021317          170 ITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRD-KYRQLILKEGAIPGLLR-LT-VEGTFEAQERARTLL  242 (314)
Q Consensus       170 i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~-~~~~~i~~~g~v~~Lv~-ll-~~~~~~~~~~A~~~L  242 (314)
                      +-   +.+..+-.++++.++.+++.|+.+|..+....-. +....+   -.+-..+. +. ..+.|.++..|-.+-
T Consensus       187 ~~---~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~---~~~~~~v~~l~~~~~~~~~~~ka~~v~  256 (265)
T 3b2a_A          187 LT---LILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIEL---LKISRIVDGLVYREGAPIIRLKAKKVS  256 (265)
T ss_dssp             GG---GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHH---HHHHHHHHHGGGCSSCHHHHHHHHHHH
T ss_pred             HH---HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHH---HHHHHHHHHHHHhcCChhHHHHHHHHH
Confidence            32   3666788888999999999999999998876421 111111   12222332 33 456777777766543

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.42  E-value=3.4e-08  Score=76.02  Aligned_cols=121  Identities=21%  Similarity=0.175  Sum_probs=89.0

Q ss_pred             hcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchh
Q 021317           47 TAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSP  126 (314)
Q Consensus        47 ~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~  126 (314)
                      ....++.++.+|+++++.++..|+.+|.++..          . .++.|+.+|+++++.+|..|+++|.++..       
T Consensus        10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~----------~-~~~~L~~~L~d~~~~vR~~A~~aL~~~~~-------   71 (131)
T 1te4_A           10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGD----------E-AFEPLLESLSNEDWRIRGAAAWIIGNFQD-------   71 (131)
T ss_dssp             -----------CCSSCCCSSSSCCSSTTSCSS----------T-THHHHHHGGGCSCHHHHHHHHHHHGGGCS-------
T ss_pred             ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCc----------h-HHHHHHHHHcCCCHHHHHHHHHHHHhcCC-------
Confidence            44667889999999899899888877776531          1 36999999999999999999999988763       


Q ss_pred             hhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHH
Q 021317          127 ILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLS  201 (314)
Q Consensus       127 i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~  201 (314)
                         ..+++.|+.++.+.+.  .++..+..+|.++..           ..+++.|+.++++.++.++..|+.+|..
T Consensus        72 ---~~a~~~L~~~L~d~~~--~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           72 ---ERAVEPLIKLLEDDSG--FVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             ---HHHHHHHHHHHHHCCT--HHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             ---HHHHHHHHHHHcCCCH--HHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence               2368999999987644  788899999987752           3467889999988889999999988764

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.33  E-value=1e-07  Score=73.24  Aligned_cols=116  Identities=19%  Similarity=0.067  Sum_probs=88.8

Q ss_pred             cceeeccccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcC
Q 021317           11 GVEVFMETYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASG   90 (314)
Q Consensus        11 ~~~v~~l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g   90 (314)
                      ...+.+|+++++.+|..|+++|.....           ..++.|+.+|+++++.+|..|+.+|.++.          ...
T Consensus        15 ~~l~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~----------~~~   73 (131)
T 1te4_A           15 VPRGSHMADENKWVRRDVSTALSRMGD-----------EAFEPLLESLSNEDWRIRGAAAWIIGNFQ----------DER   73 (131)
T ss_dssp             ------CCSSCCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGCSCHHHHHHHHHHHGGGC----------SHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhCc-----------hHHHHHHHHHcCCCHHHHHHHHHHHHhcC----------CHH
Confidence            344677888888889888888863321           12689999999999999999999999884          245


Q ss_pred             cHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHH
Q 021317           91 AAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEI  159 (314)
Q Consensus        91 ~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~  159 (314)
                      .++.|+.+|+++++.++..|+++|.++..          ..+++.|..++++.+.  .++..|..+|..
T Consensus        74 a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~--~vr~~A~~aL~~  130 (131)
T 1te4_A           74 AVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTG--FARKVAVNYLET  130 (131)
T ss_dssp             HHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCT--HHHHHHHHHGGG
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCH--HHHHHHHHHHHh
Confidence            68999999999999999999999998862          3478899999976543  777777777643

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.26  E-value=2.2e-05  Score=67.11  Aligned_cols=189  Identities=12%  Similarity=0.066  Sum_probs=131.7

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHH-hccC-CCChhHHhh-cCcHHHHHHHh-ccCCHHHHHHHHHHHHHhcCCC---CCc-
Q 021317           53 PLVELLKFQNGTLRELAAAAILT-LSAA-APNKPAIAA-SGAAPLLVQIL-HSGSVQGRVDAVTALHYLSTCK---ENS-  124 (314)
Q Consensus        53 ~Lv~lL~~~~~~~~~~a~~~L~~-La~~-~~~~~~i~~-~g~l~~Lv~lL-~~~~~~~~~~a~~~L~nLs~~~---~~~-  124 (314)
                      .+-+.+.+.+..-|..|+..|.. +... +.......+ ...+..|...+ .+.+..++..|+.+|..|+..-   .-. 
T Consensus        20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            35677788899999999999999 8642 221100111 24577888888 7889999999999999999421   211 


Q ss_pred             hhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCCh-hhhhHH-HhccCCHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 021317          125 SPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE-EGRIAI-TNSDGGILTLVETVEDGSLVSTQHAVGALLSL  202 (314)
Q Consensus       125 ~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~-~~~~~i-~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L  202 (314)
                      .+.  .-.++.+++.+.+...  .+++.+..++-.++..- +.-..- .  ...++.|+..|++.++.+++.++.+|..+
T Consensus       100 ~y~--~~llp~ll~~l~dkk~--~V~~aa~~al~~i~~~~~~~~~~~~l--~~ll~~l~~~l~~k~~~vk~~al~~l~~~  173 (249)
T 2qk1_A          100 DYV--SLVFTPLLDRTKEKKP--SVIEAIRKALLTICKYYDPLASSGRN--EDMLKDILEHMKHKTPQIRMECTQLFNAS  173 (249)
T ss_dssp             HHH--HHHHHHHHHGGGCCCH--HHHHHHHHHHHHHHHHSCTTCTTCTT--HHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             HHH--HHHHHHHHHHHcCCCH--HHHHHHHHHHHHHHHHccccccCCcH--HHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence            122  2378889999987654  77778777777776532 111100 0  12667888889888999999999999998


Q ss_pred             hccCcH--HHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 021317          203 CQSCRD--KYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRD  247 (314)
Q Consensus       203 ~~~~~~--~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~  247 (314)
                      ....+.  +.-........++.|.+++.+.++.+|..|..++..++.
T Consensus       174 ~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          174 MKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             HHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            865431  101111224689999999999999999999999999875

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=98.26  E-value=3.5e-06  Score=87.86  Aligned_cols=228  Identities=11%  Similarity=0.084  Sum_probs=152.0

Q ss_pred             cHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCh-hHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhh
Q 021317           51 IPPLVELLKFQNGTLRELAAAAILTLSAAAPNK-PAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILD  129 (314)
Q Consensus        51 v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~-~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~  129 (314)
                      ++.|+.-+.++++++|..|...|.+....+... ..-.....++.+++.|.+.++.+|..|+.+|.+++..-..  ... 
T Consensus         8 l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~~-   84 (1230)
T 1u6g_C            8 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQV-   84 (1230)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HHH-
T ss_pred             HHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HHH-
Confidence            566777888999999999999888865433211 0011235678899999999999999999999999854221  111 


Q ss_pred             cCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhh-------hHHHhccCCHHHHHHHhh-cCCHHHHHHHHHHHHH
Q 021317          130 ATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGR-------IAITNSDGGILTLVETVE-DGSLVSTQHAVGALLS  201 (314)
Q Consensus       130 ~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~-------~~i~~~~g~v~~Lv~ll~-~~~~~~~~~A~~~L~~  201 (314)
                      ...++.|+..+.+.++  .++..+..+|..++..-...       ....  ...+|.|+..+. +.+..+++.|+.+|..
T Consensus        85 ~~i~~~Ll~~l~d~~~--~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~--~~llp~L~~~l~~~~~~~~~~~al~~l~~  160 (1230)
T 1u6g_C           85 ETIVDTLCTNMLSDKE--QLRDISSIGLKTVIGELPPASSGSALAANVC--KKITGRLTSAIAKQEDVSVQLEALDIMAD  160 (1230)
T ss_dssp             HHHHHHHHHHTTCSSS--HHHHHHHHHHHHHHHHCC-----CCTHHHHH--HHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCcH--HHHHHHHHHHHHHHHhCCCcccccchHHHHH--HHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence            2356777777776544  67777888887776432211       1122  347889999998 4778999999999999


Q ss_pred             hhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhcCCCHHHHHHHHH
Q 021317          202 LCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAK  281 (314)
Q Consensus       202 L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~  281 (314)
                      ++...++.....+  ...++.|+..+.+.++.+|+.|+.+|..++....... ....++.++..+....  ++..+..|.
T Consensus       161 ~~~~~~~~l~~~~--~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~-~~~~l~~l~~~L~~~~--~~~~r~~a~  235 (1230)
T 1u6g_C          161 MLSRQGGLLVNFH--PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV-FVDLIEHLLSELSKND--SMSTTRTYI  235 (1230)
T ss_dssp             HHHHTCSSCTTTH--HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-----CTTHHHHHHHHHHHTC--SSCSCTTHH
T ss_pred             HHHHhHhHHHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHhccCC--chhHHHHHH
Confidence            9853221111111  2356778888888889999999999999987665433 2345666666665321  123456677


Q ss_pred             HHHHHHHHH
Q 021317          282 RLLQDMVQR  290 (314)
Q Consensus       282 ~~L~~l~~~  290 (314)
                      .++..+...
T Consensus       236 ~~l~~l~~~  244 (1230)
T 1u6g_C          236 QCIAAISRQ  244 (1230)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777777653

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=98.22  E-value=3.9e-05  Score=74.30  Aligned_cols=212  Identities=15%  Similarity=0.095  Sum_probs=137.1

Q ss_pred             ccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHH
Q 021317           18 TYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLV   96 (314)
Q Consensus        18 ~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv   96 (314)
                      .+.++.+|++|+.++. +...+++.   +...+.++.+.++|.+.++.++..|+.++..++..+..  .  -...+|.++
T Consensus       158 ~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~--~--~~~~~~~~~  230 (621)
T 2vgl_A          158 GDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE--E--FKTSVSLAV  230 (621)
T ss_dssp             SSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH--H--HTTHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH--H--HHHHHHHHH
Confidence            6778999999999988 66655542   22258899999999988999999999999999874321  1  123455555


Q ss_pred             HHhc----cC-------------CHHHHHHHHHHHHHhcCCC--CCchhhhhcCCcHHHHHHhhc---------cCCchH
Q 021317           97 QILH----SG-------------SVQGRVDAVTALHYLSTCK--ENSSPILDATAVPPLINLLKD---------CKKYSK  148 (314)
Q Consensus        97 ~lL~----~~-------------~~~~~~~a~~~L~nLs~~~--~~~~~i~~~g~i~~Lv~lL~~---------~~~~~~  148 (314)
                      +.|.    .+             ++-.+...+..|..++..+  +.+..+.+  .++.++..+.+         .+....
T Consensus       231 ~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~a  308 (621)
T 2vgl_A          231 SRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNA  308 (621)
T ss_dssp             HHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHH
Confidence            4443    21             5778888888888887532  22222222  33333333211         111124


Q ss_pred             HHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhh
Q 021317          149 FAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTV  228 (314)
Q Consensus       149 ~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~  228 (314)
                      +.-.|..++..+...++...      .++..|..++.+.++.++-.|+..|..++...++  ...+ . .....++..++
T Consensus       309 Vl~ea~~~i~~l~~~~~~~~------~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~--~~~~-~-~~~~~i~~~L~  378 (621)
T 2vgl_A          309 VLFEAISLIIHHDSEPNLLV------RACNQLGQFLQHRETNLRYLALESMCTLASSEFS--HEAV-K-THIETVINALK  378 (621)
T ss_dssp             HHHHHHHHHHHHCCCHHHHH------HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT--HHHH-H-TTHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCCcHHHHH------HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc--HHHH-H-HHHHHHHHHhc
Confidence            55667777777764333222      2556788888777888888999999888876532  1222 2 34566667677


Q ss_pred             -cCCHHHHHHHHHHHHHhhcC
Q 021317          229 -EGTFEAQERARTLLDLLRDT  248 (314)
Q Consensus       229 -~~~~~~~~~A~~~L~~l~~~  248 (314)
                       +.+..++..|..+|..++..
T Consensus       379 ~d~d~~Ir~~aL~lL~~l~~~  399 (621)
T 2vgl_A          379 TERDVSVRQRAVDLLYAMCDR  399 (621)
T ss_dssp             TCCCHHHHHHHHHHHHHHCCH
T ss_pred             cCCCHhHHHHHHHHHHHHcCh
Confidence             78888888888888888754

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.16  E-value=6e-05  Score=66.19  Aligned_cols=154  Identities=14%  Similarity=0.119  Sum_probs=124.9

Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHH-hcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHH
Q 021317           92 APLLVQILHSGSVQGRVDAVTALHY-LSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAI  170 (314)
Q Consensus        92 l~~Lv~lL~~~~~~~~~~a~~~L~n-Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i  170 (314)
                      +..+++-|.+++.+.+..++.-|.. ++.+.+-...++..+++..|+.+..+++  +.....+++++.+|-.+.++-..+
T Consensus       120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~--gN~q~Y~L~AL~~LM~~v~Gm~gv  197 (339)
T 3dad_A          120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAAD--HNYQSYILRALGQLMLFVDGMLGV  197 (339)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSC--HHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcC--hHHHHHHHHHHHHHHhccccccch
Confidence            4567777888888889999999998 6677888889999999999999998874  478899999999999998888788


Q ss_pred             HhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHH--------cC--ChHHHHHhhh---cCCHHHHHH
Q 021317          171 TNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK--------EG--AIPGLLRLTV---EGTFEAQER  237 (314)
Q Consensus       171 ~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~--------~g--~v~~Lv~ll~---~~~~~~~~~  237 (314)
                      +.+...|..+..++.+....+...|+..|..++...+. +...+.+        .|  -.+.|+.++.   ..+.+++.+
T Consensus       198 vs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~-~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~  276 (339)
T 3dad_A          198 VAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSEN-NAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVY  276 (339)
T ss_dssp             HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHH
T ss_pred             hCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcc-cchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHH
Confidence            76677899999999988899999999999999887632 2222222        12  3778999887   678999999


Q ss_pred             HHHHHHHhhcC
Q 021317          238 ARTLLDLLRDT  248 (314)
Q Consensus       238 A~~~L~~l~~~  248 (314)
                      |..++..+-..
T Consensus       277 amtLIN~lL~~  287 (339)
T 3dad_A          277 TVTLINKTLAA  287 (339)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            99988876543

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.03  E-value=6e-05  Score=69.37  Aligned_cols=224  Identities=10%  Similarity=0.015  Sum_probs=147.6

Q ss_pred             HHHHHHHHHHhHhhccCchhHHHHHhcC--CcHHHHHHhcC---------------C--CHHHHHHHHHHHHHhccCCCC
Q 021317           22 GYARRLNLMGPLWQLSKTRNKVKIATAG--AIPPLVELLKF---------------Q--NGTLRELAAAAILTLSAAAPN   82 (314)
Q Consensus        22 ~~~~~~a~~al~l~~~~~~~~~~l~~~g--~v~~Lv~lL~~---------------~--~~~~~~~a~~~L~~La~~~~~   82 (314)
                      ...+-.++.++......+++|..+.+.+  .+|+++.++..               +  ..+++-+++-+++-|+.+++.
T Consensus       182 ~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~  261 (480)
T 1ho8_A          182 MDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVF  261 (480)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHH
T ss_pred             CchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHH
Confidence            3445667888884455789998887643  36777654431               1  245677889999999998877


Q ss_pred             hhHHhhcCcH--HHHHHHhccC-CHHHHHHHHHHHHHhcCCC-CCch-----hhhhcCCcHHHHHHhhcc-CCchHHHHH
Q 021317           83 KPAIAASGAA--PLLVQILHSG-SVQGRVDAVTALHYLSTCK-ENSS-----PILDATAVPPLINLLKDC-KKYSKFAEK  152 (314)
Q Consensus        83 ~~~i~~~g~l--~~Lv~lL~~~-~~~~~~~a~~~L~nLs~~~-~~~~-----~i~~~g~i~~Lv~lL~~~-~~~~~~~~~  152 (314)
                      ...+...+..  +.|+.+++.. .+.+..-++.+|+||.... +...     .++..++ +++++.|+.. -.++++.+.
T Consensus       262 ~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~ed  340 (480)
T 1ho8_A          262 ANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQD  340 (480)
T ss_dssp             HHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHHH
T ss_pred             HHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHHH
Confidence            7777766643  6677777764 6889999999999999654 2222     2222344 5566666542 233344322


Q ss_pred             HH-------HHHHHhcCCh---------------hhh---------hHHHhc-cCCHHHHHHHhhc----------CCHH
Q 021317          153 AT-------ALLEILSSSE---------------EGR---------IAITNS-DGGILTLVETVED----------GSLV  190 (314)
Q Consensus       153 a~-------~~L~~L~~~~---------------~~~---------~~i~~~-~g~v~~Lv~ll~~----------~~~~  190 (314)
                      --       ..+..+++.+               .++         .++..+ -..+..|+.+|++          .++.
T Consensus       341 l~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~  420 (480)
T 1ho8_A          341 ISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKI  420 (480)
T ss_dssp             HHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHH
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcc
Confidence            11       1111222222               122         223211 1236789999973          2577


Q ss_pred             HHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 021317          191 STQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRD  247 (314)
Q Consensus       191 ~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~  247 (314)
                      +...||.=++.++.+.| ..|..+-+-|+=+.+++++.+.+++++.+|..++..+-.
T Consensus       421 ~laVAc~Digefvr~~P-~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~  476 (480)
T 1ho8_A          421 IIQVALNDITHVVELLP-ESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG  476 (480)
T ss_dssp             HHHHHHHHHHHHHHHCT-THHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             eEEeecccHHHHHHHCc-chhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            78889999999999886 678777778988888999999999999999999987643

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.01  E-value=0.0021  Score=64.24  Aligned_cols=228  Identities=13%  Similarity=0.023  Sum_probs=143.7

Q ss_pred             HHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHh-c
Q 021317           22 GYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQIL-H  100 (314)
Q Consensus        22 ~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL-~  100 (314)
                      +.++..|+.+|.++.-...+.      .+++.|.++|.+++...+..|+.+|+.+-.-..+.      .++..|+..+ +
T Consensus       451 ~~ir~gAaLGLGla~~GS~~e------ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~------~ai~~LL~~~~e  518 (963)
T 4ady_A          451 DVLLHGASLGIGLAAMGSANI------EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP------EAIHDMFTYSQE  518 (963)
T ss_dssp             HHHHHHHHHHHHHHSTTCCCH------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH------HHHHHHHHHHhc
Confidence            455666666666443222221      23567888888777767777777777653322222      2455666664 4


Q ss_pred             cCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHH
Q 021317          101 SGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTL  180 (314)
Q Consensus       101 ~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~L  180 (314)
                      +.+..++..++.+|..+....        ...++.+++.|.... ++-++..++-++..-..+..+.       .+|+.|
T Consensus       519 ~~~e~vrR~aalgLGll~~g~--------~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~-------~aIq~L  582 (963)
T 4ady_A          519 TQHGNITRGLAVGLALINYGR--------QELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNN-------SAVKRL  582 (963)
T ss_dssp             CSCHHHHHHHHHHHHHHTTTC--------GGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCH-------HHHHHH
T ss_pred             cCcHHHHHHHHHHHHhhhCCC--------hHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCH-------HHHHHH
Confidence            457888999999998776432        246788888888643 3345444444443322222222       234456


Q ss_pred             HHHhh-cCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHH-hhhcCCHHHHHHHHHHHHHhhcCCchhhcchhh
Q 021317          181 VETVE-DGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLR-LTVEGTFEAQERARTLLDLLRDTPQEKRLSSSV  258 (314)
Q Consensus       181 v~ll~-~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~-ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~  258 (314)
                      +..+. +.+..+|..|+.+|+.+...+++          .++.++. +.+++++.+|..|+.+|..++.+.+.    ..+
T Consensus       583 L~~~~~d~~d~VRraAViaLGlI~~g~~e----------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~----~~a  648 (963)
T 4ady_A          583 LHVAVSDSNDDVRRAAVIALGFVLLRDYT----------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL----QSA  648 (963)
T ss_dssp             HHHHHHCSCHHHHHHHHHHHHHHTSSSCS----------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC----HHH
T ss_pred             HHHhccCCcHHHHHHHHHHHHhhccCCHH----------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc----HHH
Confidence            66554 45688999999999998876542          5677776 55678999999999999999765542    233


Q ss_pred             hHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 021317          259 LEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMEL  294 (314)
Q Consensus       259 ~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~~~  294 (314)
                      ++.| ..+.  .|.++.++..|.-+|..+-..+.+.
T Consensus       649 id~L-~~L~--~D~d~~Vrq~Ai~ALG~Ig~gtnna  681 (963)
T 4ady_A          649 IDVL-DPLT--KDPVDFVRQAAMIALSMILIQQTEK  681 (963)
T ss_dssp             HHHH-HHHH--TCSSHHHHHHHHHHHHHHSTTCCTT
T ss_pred             HHHH-HHHc--cCCCHHHHHHHHHHHHHHhcCCccc
Confidence            4423 3333  4667778888888888777654444

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=97.97  E-value=0.00016  Score=61.71  Aligned_cols=196  Identities=12%  Similarity=0.106  Sum_probs=128.1

Q ss_pred             HHHHhccCCHHHHHHHHHHHHH-hcC-CCCCchhhhh-cCCcHHHHHHh-hccCCchHHHHHHHHHHHHhcCChh--hhh
Q 021317           95 LVQILHSGSVQGRVDAVTALHY-LST-CKENSSPILD-ATAVPPLINLL-KDCKKYSKFAEKATALLEILSSSEE--GRI  168 (314)
Q Consensus        95 Lv~lL~~~~~~~~~~a~~~L~n-Ls~-~~~~~~~i~~-~g~i~~Lv~lL-~~~~~~~~~~~~a~~~L~~L~~~~~--~~~  168 (314)
                      +.+.+.+.+..-|..++..|.. +.. .++....-.+ ...+..|...+ ++.  +..++..|+.++..|+.+-.  .-.
T Consensus        21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~--n~~v~~~A~~al~~la~~l~~~~f~   98 (249)
T 2qk1_A           21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDA--NIQAVALAAQSVELICDKLKTPGFS   98 (249)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHHHHHCTTTSC
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHhccccccc
Confidence            4456788899999999999999 873 3221110112 23566777777 454  33778889999998885432  111


Q ss_pred             -HHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 021317          169 -AITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRD  247 (314)
Q Consensus       169 -~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~  247 (314)
                       ...  .-.+|.++..+++....+++.+..+|..++...++. ...--=...++.|...+.+.++.+|+.+..+|..+..
T Consensus        99 ~~y~--~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~-~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~  175 (249)
T 2qk1_A           99 KDYV--SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPL-ASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMK  175 (249)
T ss_dssp             HHHH--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTT-CTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcccc-ccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence             222  227889999999888999999999998888644110 0000000256778888888899999999999988876


Q ss_pred             CCch--hhc----chhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 021317          248 TPQE--KRL----SSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELSMTR  298 (314)
Q Consensus       248 ~~~~--~~~----~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~~~~~~~  298 (314)
                      ....  ..+    ....++.+...+   .+.....++.|..+|..+.+.--++.+..
T Consensus       176 ~~~~~~~~l~~~l~~~iip~l~~~l---~D~~~~VR~aA~~~l~~i~~~vG~~~~~p  229 (249)
T 2qk1_A          176 EEKDGYSTLQRYLKDEVVPIVIQIV---NDTQPAIRTIGFESFAILIKIFGMNTFVK  229 (249)
T ss_dssp             HCCSCSHHHHHHHTTTHHHHHHHHH---TCSSHHHHHHHHHHHHHHHHHHCSGGGHH
T ss_pred             HcCCcchhHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence            5432  111    123444444444   36668899999999999886554444443

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.92  E-value=0.00037  Score=70.20  Aligned_cols=246  Identities=13%  Similarity=0.137  Sum_probs=170.7

Q ss_pred             HHHHHHhH-hhccCch--hHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC-CCChhHHhhcCcHHHHHHHhcc
Q 021317           26 RLNLMGPL-WQLSKTR--NKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA-APNKPAIAASGAAPLLVQILHS  101 (314)
Q Consensus        26 ~~a~~al~-l~~~~~~--~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~i~~~g~l~~Lv~lL~~  101 (314)
                      +.|+.++. ++.....  .-..+. .+.+|.++..+.+....++..|..++..+... +....    ...+|.|+..|.+
T Consensus        70 ~~a~~~~~~~~~~~~~~~~~e~~~-~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~  144 (986)
T 2iw3_A           70 ANAMQAVAHIANQSNLSPSVEPYI-VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVE  144 (986)
T ss_dssp             HHHHHHHHHHTCTTTCCTTTHHHH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCcccch-HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhcc
Confidence            66676666 4433221  112222 15678888888777888998887777776542 22111    4568999999977


Q ss_pred             C-CHHHHHHHHHHHHHhcCCCCCchhhhh--cCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHH
Q 021317          102 G-SVQGRVDAVTALHYLSTCKENSSPILD--ATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGIL  178 (314)
Q Consensus       102 ~-~~~~~~~a~~~L~nLs~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~  178 (314)
                      . ....+..|+.+|..|+...  ...+..  ...+|.+.+.+.+..+  ++...|..++..+|..-+|+..-    ..||
T Consensus       145 ~~kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~d~k~--~v~~~~~~~~~~~~~~~~n~d~~----~~~~  216 (986)
T 2iw3_A          145 TNKWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLSETMWDTKK--EVKAAATAAMTKATETVDNKDIE----RFIP  216 (986)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHTTCSSH--HHHHHHHHHHHHHGGGCCCTTTG----GGHH
T ss_pred             ccchHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchHhhcccCcH--HHHHHHHHHHHHHHhcCCCcchh----hhHH
Confidence            6 5789999999999999654  344443  5688999999988655  88889999999888877776433    4789


Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHHhhccCcHHH-HHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcchh
Q 021317          179 TLVETVEDGSLVSTQHAVGALLSLCQSCRDKY-RQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSS  257 (314)
Q Consensus       179 ~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~-~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~  257 (314)
                      .|+..+.+.+.  ...+...|..-++...-+. .-.+    .+|.|.+-++..+..+++.++-++.|+|+--.++....-
T Consensus       217 ~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l~~----~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~  290 (986)
T 2iw3_A          217 SLIQCIADPTE--VPETVHLLGATTFVAEVTPATLSI----MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAP  290 (986)
T ss_dssp             HHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHHHH----HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred             HHHHHhcChhh--hHHHHHHhhcCeeEeeecchhHHH----HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhh
Confidence            99999987643  4556767666655432100 1111    356666667778899999999999999986665566677


Q ss_pred             hhHHHHHHHhhc--CCCHHHHHHHHHHHHHHHHHH
Q 021317          258 VLEKIVYDIAAR--VDGADKAAETAKRLLQDMVQR  290 (314)
Q Consensus       258 ~~~~lv~~l~~~--~~~~~~~~~~A~~~L~~l~~~  290 (314)
                      +++.|++.+..-  .-..+++++.|.+++.-|.+.
T Consensus       291 f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~  325 (986)
T 2iw3_A          291 FLGKLLPGLKSNFATIADPEAREVTLRALKTLRRV  325 (986)
T ss_dssp             HHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHh
Confidence            788777777632  334688999999998888653

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.84  E-value=0.00025  Score=62.24  Aligned_cols=183  Identities=11%  Similarity=0.046  Sum_probs=127.0

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHH-hccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhh-h
Q 021317           52 PPLVELLKFQNGTLRELAAAAILT-LSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPIL-D  129 (314)
Q Consensus        52 ~~Lv~lL~~~~~~~~~~a~~~L~~-La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~-~  129 (314)
                      ..+++.|.+.+...+..++.-|.. ++.+.+....+++.+|+..|++....++...+..++.+|.+|-...+.-.-++ .
T Consensus       121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~  200 (339)
T 3dad_A          121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAH  200 (339)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHC
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCC
Confidence            356677777777777777777777 55567788889999999999999999999999999999999998766665565 4


Q ss_pred             cCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChh-hhhHHHhc-------cC--CHHHHHHHhh---cCCHHHHHHHH
Q 021317          130 ATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEE-GRIAITNS-------DG--GILTLVETVE---DGSLVSTQHAV  196 (314)
Q Consensus       130 ~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~-~~~~i~~~-------~g--~v~~Lv~ll~---~~~~~~~~~A~  196 (314)
                      ...|..+..++.+.  ...+...|+.+|..++...+ +...+...       .|  -.+.|+.+|.   +++..++.+|.
T Consensus       201 ~~fI~~lyslv~s~--~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am  278 (339)
T 3dad_A          201 SDTIQWLYTLCASL--SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV  278 (339)
T ss_dssp             HHHHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCc--cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence            56888888888853  45888999999999887754 33332211       11  2679999997   56788888877


Q ss_pred             HHHHHhhccCc-HHHHHHHH---HcCChH-HHHHhhhcC--CHHHHH
Q 021317          197 GALLSLCQSCR-DKYRQLIL---KEGAIP-GLLRLTVEG--TFEAQE  236 (314)
Q Consensus       197 ~~L~~L~~~~~-~~~~~~i~---~~g~v~-~Lv~ll~~~--~~~~~~  236 (314)
                      ..+-.+-...+ .+.+..+.   +.-++. .+.++++..  ++..++
T Consensus       279 tLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~  325 (339)
T 3dad_A          279 TLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRT  325 (339)
T ss_dssp             HHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHH
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHH
Confidence            76644433322 23233333   223344 444455543  445544

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=97.75  E-value=0.00074  Score=62.19  Aligned_cols=231  Identities=13%  Similarity=0.091  Sum_probs=143.7

Q ss_pred             HHHHhcCC-CHHHHHHHHHHHHHhccCCCChhHHhhcC--cHHHHHHHhcc---------------C--CHHHHHHHHHH
Q 021317           54 LVELLKFQ-NGTLRELAAAAILTLSAAAPNKPAIAASG--AAPLLVQILHS---------------G--SVQGRVDAVTA  113 (314)
Q Consensus        54 Lv~lL~~~-~~~~~~~a~~~L~~La~~~~~~~~i~~~g--~l~~Lv~lL~~---------------~--~~~~~~~a~~~  113 (314)
                      ++..|++. +.+.+.-++.+|..|...++.|..+.+.+  .+|+++..+..               +  ...++-+++.+
T Consensus       172 ~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~  251 (480)
T 1ho8_A          172 LINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLL  251 (480)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHH
T ss_pred             HHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHH
Confidence            55556553 45556678889999999889998887554  36777655431               1  24567889999


Q ss_pred             HHHhcCCCCCchhhhhcCCc--HHHHHHhhccCCchHHHHHHHHHHHHhcCChh-h----hhHHHhccCCHHHHHHHhhc
Q 021317          114 LHYLSTCKENSSPILDATAV--PPLINLLKDCKKYSKFAEKATALLEILSSSEE-G----RIAITNSDGGILTLVETVED  186 (314)
Q Consensus       114 L~nLs~~~~~~~~i~~~g~i--~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~-~----~~~i~~~~g~v~~Lv~ll~~  186 (314)
                      ++-|+..++....+...+..  +.|+++++.... +++.+-+++++.|+..... .    ...++...++ +.++..|..
T Consensus       252 iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~K-EKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~  329 (480)
T 1ho8_A          252 IWLLTFNPVFANELVQKYLSDFLDLLKLVKITIK-EKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSE  329 (480)
T ss_dssp             HHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCS-HHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHS
T ss_pred             HHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhcc-chhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhh
Confidence            99999998877777766643  677788887543 4888999999999987641 1    1222212233 556666654


Q ss_pred             ---CCHHHHHHHHHH-------HHHhhccCcHHHHHHH----------------HHc----------CChHHHHHhhhc-
Q 021317          187 ---GSLVSTQHAVGA-------LLSLCQSCRDKYRQLI----------------LKE----------GAIPGLLRLTVE-  229 (314)
Q Consensus       187 ---~~~~~~~~A~~~-------L~~L~~~~~~~~~~~i----------------~~~----------g~v~~Lv~ll~~-  229 (314)
                         .++++.+.--..       ...++..  ++++.++                +.+          ..++.|++++.+ 
T Consensus       330 rk~~Dedl~edl~~L~e~L~~~~~~ltsf--DeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~  407 (480)
T 1ho8_A          330 RKYSDEELRQDISNLKEILENEYQELTSF--DEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAK  407 (480)
T ss_dssp             SCCSSHHHHHHHHHHHHHHHHHHHTCCHH--HHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHhcccH--HHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhh
Confidence               344443322111       1222211  1223222                221          356788888873 


Q ss_pred             ---------CCHHHHHHHHHHHHHhhcCC-chh-hc-chhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Q 021317          230 ---------GTFEAQERARTLLDLLRDTP-QEK-RL-SSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRS  291 (314)
Q Consensus       230 ---------~~~~~~~~A~~~L~~l~~~~-~~~-~~-~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s  291 (314)
                               .++.+..-|+-=+..+.++. +++ .+ +.|+-+.+ ..|.  .+.+++.+.+|-.+++.+..++
T Consensus       408 ~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~V-M~Lm--~h~d~~Vr~~AL~avQklm~~~  478 (480)
T 1ho8_A          408 VRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADI-MELL--NHSDSRVKYEALKATQAIIGYT  478 (480)
T ss_dssp             HHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHH-HHHT--SCSSHHHHHHHHHHHHHHHHHS
T ss_pred             ccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHH-HHHh--cCCCHHHHHHHHHHHHHHHHhc
Confidence                     25666667777777777544 433 22 35665544 4444  2446899999999999988764

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=97.72  E-value=0.00015  Score=64.98  Aligned_cols=256  Identities=9%  Similarity=-0.015  Sum_probs=138.0

Q ss_pred             eccccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHH
Q 021317           15 FMETYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPL   94 (314)
Q Consensus        15 ~~l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~   94 (314)
                      ....++|...++-.-..+......++.  .+   =++..|.+=++++++-++-.|+++|+++...+- -     ....++
T Consensus        75 kl~~s~d~~lKrLvYLyl~~~~~~~~e--~i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m-~-----~~l~~~  143 (355)
T 3tjz_B           75 KLFQSNDPTLRRMCYLTIKEMSCIAED--VI---IVTSSLTKDMTGKEDSYRGPAVRALCQITDSTM-L-----QAIERY  143 (355)
T ss_dssp             GGGGCCCHHHHHHHHHHHHHHTTTSSC--GG---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTT-H-----HHHHHH
T ss_pred             HHhcCCCHHHHHHHHHHHHHhCCCHHH--HH---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHH-H-----HHHHHH
Confidence            356777888888777777633332211  11   335667788888999999999999999954321 1     234566


Q ss_pred             HHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhcc
Q 021317           95 LVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSD  174 (314)
Q Consensus        95 Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~  174 (314)
                      +-+.|.+.++.++..|+-+...|....+  + +++ +.++.+-+++.+.++  .++.+|+++|..+...+.  .      
T Consensus       144 lk~~L~d~~pyVRk~A~l~~~kL~~~~p--e-~v~-~~~~~l~~ll~d~n~--~V~~~Al~lL~ei~~~d~--~------  209 (355)
T 3tjz_B          144 MKQAIVDKVPSVSSSALVSSLHLLKCSF--D-VVK-RWVNEAQEAASSDNI--MVQYHALGLLYHVRKNDR--L------  209 (355)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHTTTCH--H-HHH-TTHHHHHHHTTCSSH--HHHHHHHHHHHHHHTTCH--H------
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHhccCH--H-HHH-HHHHHHHHHhcCCCc--cHHHHHHHHHHHHHhhch--H------
Confidence            7778889999999999999999884432  1 232 588888888877644  677899999998876431  1      


Q ss_pred             CCHHHHHHHhhcC---CHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCch
Q 021317          175 GGILTLVETVEDG---SLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE  251 (314)
Q Consensus       175 g~v~~Lv~ll~~~---~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~  251 (314)
                       .+..++..+..+   ++-.+-.-+..+..++..+.++     .....++.|...+++.++.+.-.|+.++..+...+..
T Consensus       210 -a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~  283 (355)
T 3tjz_B          210 -AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK  283 (355)
T ss_dssp             -HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHHHTC-------
T ss_pred             -HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH
Confidence             334455555443   3444444444444444332001     1234567777788889999999999999888663332


Q ss_pred             hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCCC
Q 021317          252 KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELSMTRIQQRAASSAPSKI  311 (314)
Q Consensus       252 ~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~~~~~~~~~~~~~~~~~~~~  311 (314)
                       .. ..++..+...+.   ..+...+--|.+.|..++...|+     .+++-+..++.-|
T Consensus       284 -~~-~~a~~~L~~fLs---s~d~niryvaLr~L~~l~~~~P~-----~v~~~n~~ie~li  333 (355)
T 3tjz_B          284 -EL-APAVSVLQLFCS---SPKAALRYAAVRTLNKVAMKHPS-----AVTACNLDLENLV  333 (355)
T ss_dssp             ------CCCTHHHHHH---SSSSSSHHHHHHCC---------------------------
T ss_pred             -HH-HHHHHHHHHHHc---CCCchHHHHHHHHHHHHHHHCcH-----HHHHHHHHHHHHc
Confidence             22 222333333343   23356788888888888765433     3444454444433

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=97.69  E-value=0.0072  Score=60.45  Aligned_cols=230  Identities=14%  Similarity=0.020  Sum_probs=144.3

Q ss_pred             cccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHh-cCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHH
Q 021317           17 ETYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELL-KFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLL   95 (314)
Q Consensus        17 l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL-~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~L   95 (314)
                      +..++...++.|..++.+..-...|...      +..|+..+ ...+..++..++..|+.+..        .+...++.+
T Consensus       481 L~dd~~~~~~~AalALGli~vGTgn~~a------i~~LL~~~~e~~~e~vrR~aalgLGll~~--------g~~e~~~~l  546 (963)
T 4ady_A          481 LYNDSATSGEAAALGMGLCMLGTGKPEA------IHDMFTYSQETQHGNITRGLAVGLALINY--------GRQELADDL  546 (963)
T ss_dssp             HHTCCHHHHHHHHHHHHHHHTTCCCHHH------HHHHHHHHHHCSCHHHHHHHHHHHHHHTT--------TCGGGGHHH
T ss_pred             HhcCCHHHHHHHHHHHhhhhcccCCHHH------HHHHHHHHhccCcHHHHHHHHHHHHhhhC--------CChHHHHHH
Confidence            3344444455555555533222222222      34556554 34577888888888887643        345677888


Q ss_pred             HHHhcc-CCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhcc
Q 021317           96 VQILHS-GSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSD  174 (314)
Q Consensus        96 v~lL~~-~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~  174 (314)
                      ++.|.. .++-+|..++.++.--.....|      ..+|+.|+..+.++.. ..++..|.-.|..+....+         
T Consensus       547 i~~L~~~~dp~vRygaa~alglAyaGTGn------~~aIq~LL~~~~~d~~-d~VRraAViaLGlI~~g~~---------  610 (963)
T 4ady_A          547 ITKMLASDESLLRYGGAFTIALAYAGTGN------NSAVKRLLHVAVSDSN-DDVRRAAVIALGFVLLRDY---------  610 (963)
T ss_dssp             HHHHHHCSCHHHHHHHHHHHHHHTTTSCC------HHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHTSSSC---------
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHhcCCCC------HHHHHHHHHHhccCCc-HHHHHHHHHHHHhhccCCH---------
Confidence            888864 6888888888777654433323      2356777777766433 3677788887877655432         


Q ss_pred             CCHHHHHHHh-hcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhh
Q 021317          175 GGILTLVETV-EDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKR  253 (314)
Q Consensus       175 g~v~~Lv~ll-~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~  253 (314)
                      ..++.++.+| ++.++.+|..|..+|..++.+++.   .     .++..|..+..+.++.++..|+.+|..+.....+..
T Consensus       611 e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~---~-----~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~  682 (963)
T 4ady_A          611 TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL---Q-----SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKL  682 (963)
T ss_dssp             SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC---H-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTT
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc---H-----HHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCcccc
Confidence            3566777755 467899999999999999987652   1     256777788889999999999999999876554321


Q ss_pred             --cchhhhHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 021317          254 --LSSSVLEKIVYDIAARVDGADKAAETAKRLLQ  285 (314)
Q Consensus       254 --~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~  285 (314)
                        ....+++.+...+.. ...+..++-.|+-++.
T Consensus       683 ~~rva~~l~~L~~~~~d-k~~d~~~~fga~iAqG  715 (963)
T 4ady_A          683 NPQVADINKNFLSVITN-KHQEGLAKFGACVAQG  715 (963)
T ss_dssp             CTTHHHHHHHHHHHHHC-SSSCHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHH
Confidence              224455545444431 1122445544444443

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=97.64  E-value=0.0072  Score=48.42  Aligned_cols=184  Identities=14%  Similarity=0.167  Sum_probs=102.2

Q ss_pred             hcCcHHHHHHHhccCCHHHHHHHHHHHHHhcC-CCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhh
Q 021317           88 ASGAAPLLVQILHSGSVQGRVDAVTALHYLST-CKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEG  166 (314)
Q Consensus        88 ~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~  166 (314)
                      +...++.++.+|+++-..++.+|+.+|.+++. .++....++     ..|+-+++.+.. -++......++.-++.   .
T Consensus        30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~-----~kL~vm~~ksEa-IpltqeIa~a~G~la~---i  100 (253)
T 2db0_A           30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPML-----KKLFSLLKKSEA-IPLTQEIAKAFGQMAK---E  100 (253)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHH-----HHHHHHHHHCCS-HHHHHHHHHHHHHHHH---H
T ss_pred             hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHH-----HHHHHHHhhccc-CchHHHHHHHHhHHHH---h
Confidence            56789999999999999999999999999984 343333222     223333333211 1222222222222221   1


Q ss_pred             hhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHH------------------------------
Q 021317          167 RIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK------------------------------  216 (314)
Q Consensus       167 ~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~------------------------------  216 (314)
                      +-.++  .+.||.+..-..-++++++-+...+|..++..+|. ....+++                              
T Consensus       101 ~Pe~v--~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~-l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~  177 (253)
T 2db0_A          101 KPELV--KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPM-LMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFK  177 (253)
T ss_dssp             CHHHH--HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHH
T ss_pred             CHHHH--HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChH-HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCcc
Confidence            11222  12333333333333444433333333333332221 0000000                              


Q ss_pred             --cCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q 021317          217 --EGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQ  289 (314)
Q Consensus       217 --~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~  289 (314)
                        .-.+|.|..++.+++.-++..|+.+|.+++.-++.  +...    +...+....|.++..+.+.+..|..+.-
T Consensus       178 yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npk--lRki----i~~kl~e~~D~S~lv~~~V~egL~rl~l  246 (253)
T 2db0_A          178 YVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDK--LRKV----VIKRLEELNDTSSLVNKTVKEGISRLLL  246 (253)
T ss_dssp             HHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH--HHHH----HHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred             ccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH--HHHH----HHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence              13678899999999999999999999999876642  2222    2222344457788899999999988874

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=97.50  E-value=0.00054  Score=61.31  Aligned_cols=207  Identities=11%  Similarity=-0.047  Sum_probs=122.8

Q ss_pred             cccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHH
Q 021317           17 ETYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLV   96 (314)
Q Consensus        17 l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv   96 (314)
                      ++++|+-++-.|++++...... +.-.     ...+.+.+.|.+.++.++..|+-+...|...  +.+.+  .++++.+-
T Consensus       113 l~~~N~~iR~lALRtL~~I~~~-~m~~-----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~--~pe~v--~~~~~~l~  182 (355)
T 3tjz_B          113 MTGKEDSYRGPAVRALCQITDS-TMLQ-----AIERYMKQAIVDKVPSVSSSALVSSLHLLKC--SFDVV--KRWVNEAQ  182 (355)
T ss_dssp             HHSSCHHHHHHHHHHHHHHCCT-TTHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTT--CHHHH--HTTHHHHH
T ss_pred             cCCCcHhHHHHHHHHHhcCCCH-HHHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhcc--CHHHH--HHHHHHHH
Confidence            4567888899999988844432 2222     2346688888999999999999998887643  22333  37899999


Q ss_pred             HHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCC-chHHHHHHHHHHHHhcCChhhhhHHHhccC
Q 021317           97 QILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKK-YSKFAEKATALLEILSSSEEGRIAITNSDG  175 (314)
Q Consensus        97 ~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g  175 (314)
                      +++.+.++.+..+|+.+|..+...+.        .++..|+.-+..+.. .+-.+..-+.++..++..++..   . ...
T Consensus       183 ~ll~d~n~~V~~~Al~lL~ei~~~d~--------~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~---~-~~~  250 (355)
T 3tjz_B          183 EAASSDNIMVQYHALGLLYHVRKNDR--------LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS---R-DSP  250 (355)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHHHTTCH--------HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC---------------
T ss_pred             HHhcCCCccHHHHHHHHHHHHHhhch--------HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh---h-HHH
Confidence            99999999999999999999986541        144555666555321 1111122233333333322111   1 234


Q ss_pred             CHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCch
Q 021317          176 GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE  251 (314)
Q Consensus       176 ~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~  251 (314)
                      .++.+..+|++.++.+.-.|+.++..+..... .    .. ..++..|..++.+.++.+|-.|...|..+....++
T Consensus       251 ~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~-~----~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~  320 (355)
T 3tjz_B          251 LFDFIESCLRNKHEMVVYEAASAIVNLPGCSA-K----EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPS  320 (355)
T ss_dssp             ------CCCCCSSHHHHHHHHHHHTC-----------------CCCTHHHHHHSSSSSSHHHHHHCC---------
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHhccCCCH-H----HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcH
Confidence            56677777888899999999999988875321 1    11 34577788888899999999999988888765443

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=97.04  E-value=0.005  Score=51.82  Aligned_cols=173  Identities=15%  Similarity=0.092  Sum_probs=121.1

Q ss_pred             HHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCC-----HHHHHHHHHHHHHhccCCCC--hhHHhhcCcHHHHHH
Q 021317           25 RRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQN-----GTLRELAAAAILTLSAAAPN--KPAIAASGAAPLLVQ   97 (314)
Q Consensus        25 ~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~-----~~~~~~a~~~L~~La~~~~~--~~~i~~~g~l~~Lv~   97 (314)
                      ...|+.-+.-.+.+++.|..+.++...-.|..+|...+     +-+|..++.+++.|...++.  -..+.+.+.+|..++
T Consensus        73 VcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLr  152 (268)
T 2fv2_A           73 VCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLR  152 (268)
T ss_dssp             HHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHH
Confidence            34444444544468999999999999888889996442     45788889999999986543  333347899999999


Q ss_pred             HhccCCHHHHHHHHHHHHHhcCCCCCchhhhh--------cCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhH
Q 021317           98 ILHSGSVQGRVDAVTALHYLSTCKENSSPILD--------ATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIA  169 (314)
Q Consensus        98 lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~--------~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~  169 (314)
                      .++.+++-.+..|..++..+-.++.+...+-.        ..++..++.-+.. .+.+++.....++..-|+.++..|..
T Consensus       153 ime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~-~ps~RLLKhiircYlRLsdn~rar~a  231 (268)
T 2fv2_A          153 IMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSK-EPSARLLKHVVRCYLRLSDNPRAREA  231 (268)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTT-SCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred             HHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHhcCHHHHHH
Confidence            99999999999999999999877765554443        1234444444433 34558889999999999999888877


Q ss_pred             HHhccCCHH------HHHHHhhcCCHHHHHHHHHHHHHh
Q 021317          170 ITNSDGGIL------TLVETVEDGSLVSTQHAVGALLSL  202 (314)
Q Consensus       170 i~~~~g~v~------~Lv~ll~~~~~~~~~~A~~~L~~L  202 (314)
                      +-.   ++|      .+-.+++ +++..+.+-...+.|+
T Consensus       232 L~~---~LP~~Lrd~tf~~~l~-~D~~~k~~l~qLl~n~  266 (268)
T 2fv2_A          232 LRQ---CLPDQLKDTTFAQVLK-DDTTTKRWLAQLVKNL  266 (268)
T ss_dssp             HHH---HSCGGGTSSTTHHHHT-SCHHHHHHHHHHHHHS
T ss_pred             HHH---hCcHHhhChHHHHHHh-cCHHHHHHHHHHHHhc
Confidence            752   222      1222232 4566666666666655

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=97.04  E-value=0.088  Score=42.23  Aligned_cols=205  Identities=14%  Similarity=0.125  Sum_probs=133.1

Q ss_pred             eeccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhc-CCCHHHHHHHHHHHHHhccCCCChhHHhhcCc
Q 021317           14 VFMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLK-FQNGTLRELAAAAILTLSAAAPNKPAIAASGA   91 (314)
Q Consensus        14 v~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~-~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~   91 (314)
                      +.+|..+-..+|..|+..+. .+..-++-...+.+     .|+.+++ ++.-.....-+++++.++...   ..++ .+.
T Consensus        38 I~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~-----kL~vm~~ksEaIpltqeIa~a~G~la~i~---Pe~v-~~v  108 (253)
T 2db0_A           38 IELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLK-----KLFSLLKKSEAIPLTQEIAKAFGQMAKEK---PELV-KSM  108 (253)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHH-----HHHHHHHHCCSHHHHHHHHHHHHHHHHHC---HHHH-HHH
T ss_pred             HHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHH-----HHHHHHhhcccCchHHHHHHHHhHHHHhC---HHHH-Hhh
Confidence            45566666778999988888 66666666555543     4666664 556666566678888887521   1111 234


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHhc-CCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHH
Q 021317           92 APLLVQILHSGSVQGRVDAVTALHYLS-TCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAI  170 (314)
Q Consensus        92 l~~Lv~lL~~~~~~~~~~a~~~L~nLs-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i  170 (314)
                      +|.+..=.+-+++..+.+-..+|..++ .+|..-.     +++..+..++.+.+.. + +-.|+..+   +.-.++.-.-
T Consensus       109 Vp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~-D-kl~aLnFi---~alGen~~~y  178 (253)
T 2db0_A          109 IPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNRE-D-KLTALNFI---EAMGENSFKY  178 (253)
T ss_dssp             HHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHH-H-HHHHHHHH---HTCCTTTHHH
T ss_pred             HHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChH-H-HHHHHHHH---HHHhccCccc
Confidence            455555556689999999999999888 4443222     3445567777765432 2 23344444   4444455455


Q ss_pred             HhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 021317          171 TNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLR  246 (314)
Q Consensus       171 ~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~  246 (314)
                      +  .-.+|.|..+|.+++.-++..|..+|.+++..++ +.|..+.      .-++=+.+.+.-+++.....|..+.
T Consensus       179 v--~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~np-klRkii~------~kl~e~~D~S~lv~~~V~egL~rl~  245 (253)
T 2db0_A          179 V--NPFLPRIINLLHDGDEIVRASAVEALVHLATLND-KLRKVVI------KRLEELNDTSSLVNKTVKEGISRLL  245 (253)
T ss_dssp             H--GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCH-HHHHHHH------HHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred             c--CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCH-HHHHHHH------HHHHHhcCcHHHHHHHHHHHHHHHH
Confidence            4  3489999999999999999999999999999875 5665443      2334445666777766666665553

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=96.96  E-value=0.017  Score=58.31  Aligned_cols=223  Identities=15%  Similarity=0.148  Sum_probs=144.3

Q ss_pred             CCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChh--HHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC-CCCch
Q 021317           49 GAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKP--AIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC-KENSS  125 (314)
Q Consensus        49 g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~--~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~  125 (314)
                      ++++.|.+.+.+....  +.|+.++..|+.......  .-.--+.+|.++..+.+....++..|-.++..+... +... 
T Consensus        54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a-  130 (986)
T 2iw3_A           54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA-  130 (986)
T ss_dssp             HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG-
T ss_pred             hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH-
Confidence            4566677777654333  889999999986532211  111125788888888888899998888888777632 2221 


Q ss_pred             hhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcc
Q 021317          126 PILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQS  205 (314)
Q Consensus       126 ~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~  205 (314)
                       +  ...+|.|++.|.+...| +.+..|+.++..|+......-... =...||.+-..+.+..++++..|..+|..+|..
T Consensus       131 -~--~~~~~~~~~~~~~~~kw-~~k~~~l~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~  205 (986)
T 2iw3_A          131 -I--KALLPHLTNAIVETNKW-QEKIAILAAFSAMVDAAKDQVALR-MPELIPVLSETMWDTKKEVKAAATAAMTKATET  205 (986)
T ss_dssp             -H--HHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHSHHHHHHH-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGG
T ss_pred             -H--HHHHHHHHHHhccccch-HHHHHHHHHHHHHHHHhHHHHHHh-ccchhcchHhhcccCcHHHHHHHHHHHHHHHhc
Confidence             1  45789999999876666 667889999999886532222111 245788888888888899999999999999974


Q ss_pred             CcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhc-CCCHHHHHHHHHHHH
Q 021317          206 CRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAAR-VDGADKAAETAKRLL  284 (314)
Q Consensus       206 ~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~-~~~~~~~~~~A~~~L  284 (314)
                      -.+  ++.   ...+|.|++.+.+.+. +    -.++..|+.-.--..+..-.+--+++.|... ...+...+++++-+.
T Consensus       206 ~~n--~d~---~~~~~~~~~~~~~p~~-~----~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~  275 (986)
T 2iw3_A          206 VDN--KDI---ERFIPSLIQCIADPTE-V----PETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVII  275 (986)
T ss_dssp             CCC--TTT---GGGHHHHHHHHHCTTH-H----HHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred             CCC--cch---hhhHHHHHHHhcChhh-h----HHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEE
Confidence            322  111   2478889988876633 2    2345666543321223333333344444322 233456678888888


Q ss_pred             HHHHH
Q 021317          285 QDMVQ  289 (314)
Q Consensus       285 ~~l~~  289 (314)
                      .||.+
T Consensus       276 ~n~~~  280 (986)
T 2iw3_A          276 DNMCK  280 (986)
T ss_dssp             HHHHT
T ss_pred             cchhh
Confidence            88875

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=96.86  E-value=0.0096  Score=55.78  Aligned_cols=237  Identities=16%  Similarity=0.126  Sum_probs=146.1

Q ss_pred             eeccccCCHHHHHHHHHHhH-hhccCchhHHHHHhc--CCcHHHHHHh--cC------C--CHHHHHHHHHHHHHhccCC
Q 021317           14 VFMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATA--GAIPPLVELL--KF------Q--NGTLRELAAAAILTLSAAA   80 (314)
Q Consensus        14 v~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~--g~v~~Lv~lL--~~------~--~~~~~~~a~~~L~~La~~~   80 (314)
                      +..|-++..++|--|..+|. +...+..........  +..-.|+.++  +.      +  -..+|+.++.+|+.+ .+-
T Consensus       180 ~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hL  258 (800)
T 3oc3_A          180 SDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPL  258 (800)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTT
T ss_pred             HHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhC
Confidence            44567789999999999998 554443211100111  2222333333  11      1  246899999999999 642


Q ss_pred             CChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhh-cCCcHHHHHHhhccCCchHHHHHHHHHHHH
Q 021317           81 PNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILD-ATAVPPLINLLKDCKKYSKFAEKATALLEI  159 (314)
Q Consensus        81 ~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~  159 (314)
                      +..     ..++..++..+..+.-+++..++-.|..+      ++.+.+ .++++.++..|++.++  +++..|+.+|.-
T Consensus       259 p~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~D~DD--DVRAVAAetLiP  325 (800)
T 3oc3_A          259 IGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLSSPDE--DIKLLSAELLCH  325 (800)
T ss_dssp             SCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTTCSSH--HHHHHHHHHHTT
T ss_pred             Chh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcCCccc--HHHHHHHHHhhh
Confidence            221     45566777777788899999999999999      222222 4567777788887644  888888888887


Q ss_pred             hcCChhhhhHHHhccCCHHHHHHHhhcCC--HHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHH
Q 021317          160 LSSSEEGRIAITNSDGGILTLVETVEDGS--LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQER  237 (314)
Q Consensus       160 L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~--~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~  237 (314)
                      ++ .++..      ...+..+-..|.+.+  ..-.......|+.|+..+..    .-.....+|.|-.++++.-+.+|..
T Consensus       326 IA-~p~~l------~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~----a~~dp~LVPRL~PFLRHtITSVR~A  394 (800)
T 3oc3_A          326 FP-ITDSL------DLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE----LSIPPERLKDIFPCFTSPVPEVRTS  394 (800)
T ss_dssp             SC-CSSTH------HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT----CCCCSGGGGGTGGGGTCSSHHHHHH
T ss_pred             hc-chhhH------HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc----cccChHHHHHHHhhhcCCcHHHHHH
Confidence            77 11111      113334444444321  22234556677777766521    1112368999999999999999999


Q ss_pred             HHHHHHHhhcCCchhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 021317          238 ARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQ  285 (314)
Q Consensus       238 A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~  285 (314)
                      ...+|..+.        ...+++-+.+.+.  ....++..+.+..+.+
T Consensus       395 VL~TL~tfL--------~~~~LRLIFQNIL--LE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          395 ILNMVKNLS--------EESIDFLVAEVVL--IEEKDEIREMAIKLLK  432 (800)
T ss_dssp             HHHHTTTCC--------CHHHHHHHHHHHH--HCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHH--------hhhHHHHHHHHHH--hCCcHHHHHHHHHHHH
Confidence            999887765        2234444444444  3445777777777664

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=96.72  E-value=0.03  Score=47.11  Aligned_cols=219  Identities=16%  Similarity=0.150  Sum_probs=139.0

Q ss_pred             CCHHHHHHHHHHhH-hhccCchhHHHHH-hcCCcHHHHHHh-------cCC--CHH--HH-HHHHHHHHHhccCCCChhH
Q 021317           20 FEGYARRLNLMGPL-WQLSKTRNKVKIA-TAGAIPPLVELL-------KFQ--NGT--LR-ELAAAAILTLSAAAPNKPA   85 (314)
Q Consensus        20 ~~~~~~~~a~~al~-l~~~~~~~~~~l~-~~g~v~~Lv~lL-------~~~--~~~--~~-~~a~~~L~~La~~~~~~~~   85 (314)
                      -+++.|+.|+..|. .-...++---.+- ..|.+..|++=.       ..+  +..  -| -+|+..|..+|.+++.|..
T Consensus        13 ~~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshpetr~~   92 (268)
T 2fv2_A           13 SSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSA   92 (268)
T ss_dssp             SSTTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTTTHHH
T ss_pred             cCchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCcchhhH
Confidence            35667999988887 3333333333333 457777775533       222  111  22 3455566778999999999


Q ss_pred             HhhcCcHHHHHHHhccCC-----HHHHHHHHHHHHHhcCCCC--CchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHH
Q 021317           86 IAASGAAPLLVQILHSGS-----VQGRVDAVTALHYLSTCKE--NSSPILDATAVPPLINLLKDCKKYSKFAEKATALLE  158 (314)
Q Consensus        86 i~~~g~l~~Lv~lL~~~~-----~~~~~~a~~~L~nLs~~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~  158 (314)
                      +.+++.--.|-..|+..+     +.+|-.++++++.|...++  ....+.+.+++|..++.++.|++  --+.-|+-++.
T Consensus        93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~Gse--lSKtvAtfIlq  170 (268)
T 2fv2_A           93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSE--LSKTVATFILQ  170 (268)
T ss_dssp             HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCH--HHHHHHHHHHH
T ss_pred             HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccH--HHHHHHHHHHH
Confidence            999887666666676543     5788999999999995543  44556678999999999999876  33445777777


Q ss_pred             HhcCChhhhhHHHhccCC-------HHHHHHH-hhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHH------
Q 021317          159 ILSSSEEGRIAITNSDGG-------ILTLVET-VEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLL------  224 (314)
Q Consensus       159 ~L~~~~~~~~~i~~~~g~-------v~~Lv~l-l~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv------  224 (314)
                      .+-.++.+-..+.....-       +..++.- .++.++.+.....++-.-|+.+.  ..|+++..  .+|.-+      
T Consensus       171 KIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~--rar~aL~~--~LP~~Lrd~tf~  246 (268)
T 2fv2_A          171 KILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNP--RAREALRQ--CLPDQLKDTTFA  246 (268)
T ss_dssp             HHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSH--HHHHHHHH--HSCGGGTSSTTH
T ss_pred             HHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCH--HHHHHHHH--hCcHHhhChHHH
Confidence            777776665555432222       2222222 24567888899999999999764  56777765  122111      


Q ss_pred             HhhhcCCHHHHHHHHHHHHHh
Q 021317          225 RLTVEGTFEAQERARTLLDLL  245 (314)
Q Consensus       225 ~ll~~~~~~~~~~A~~~L~~l  245 (314)
                      .++ .+|+..++.=..++.|+
T Consensus       247 ~~l-~~D~~~k~~l~qLl~n~  266 (268)
T 2fv2_A          247 QVL-KDDTTTKRWLAQLVKNL  266 (268)
T ss_dssp             HHH-TSCHHHHHHHHHHHHHS
T ss_pred             HHH-hcCHHHHHHHHHHHHhc
Confidence            122 25676666555566554

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=96.72  E-value=0.061  Score=46.06  Aligned_cols=183  Identities=13%  Similarity=0.039  Sum_probs=116.2

Q ss_pred             eccccCCHHHHHHHHHHhH-hhccCchh--HHHHH-hc-CCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC---CC-hhH
Q 021317           15 FMETYFEGYARRLNLMGPL-WQLSKTRN--KVKIA-TA-GAIPPLVELLKFQNGTLRELAAAAILTLSAAA---PN-KPA   85 (314)
Q Consensus        15 ~~l~~~~~~~~~~a~~al~-l~~~~~~~--~~~l~-~~-g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~---~~-~~~   85 (314)
                      .-|.+.+...|..|+..+. .+...+..  ..... .- ...+.+-..+.+.+..+...++.++..++..-   .. +..
T Consensus        16 e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~   95 (278)
T 4ffb_C           16 ERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAH   95 (278)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHH
T ss_pred             HhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccch
Confidence            5688999999999999988 55433221  11111 12 33456667888889999999999998887531   11 221


Q ss_pred             --HhhcCcHHHHHHH-hccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcC
Q 021317           86 --IAASGAAPLLVQI-LHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSS  162 (314)
Q Consensus        86 --i~~~g~l~~Lv~l-L~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~  162 (314)
                        ..-...+|.|+.- |.++.+.++..+..++..+.........     .++.++..+.+.+  ++++..++.+|..+..
T Consensus        96 ~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~Kn--pkv~~~~l~~l~~~l~  168 (278)
T 4ffb_C           96 NITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEKKL--PKLIAAAANCVYELMA  168 (278)
T ss_dssp             HHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGCSC--HHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhccC--HHHHHHHHHHHHHHHH
Confidence              1234567777764 6788899999999988877643322222     2344555555543  4788888877776543


Q ss_pred             Chh----hhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccC
Q 021317          163 SEE----GRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSC  206 (314)
Q Consensus       163 ~~~----~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~  206 (314)
                      ...    +....+  ..+++.+..++.+.++.+|..|..++..+-..-
T Consensus       169 ~fg~~~~~~k~~l--~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~  214 (278)
T 4ffb_C          169 AFGLTNVNVQTFL--PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT  214 (278)
T ss_dssp             HHTTTTCCHHHHH--HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred             HhCCCcCCchhHH--HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence            211    111112  125567888889999999999999998887653

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=96.36  E-value=0.02  Score=50.02  Aligned_cols=188  Identities=12%  Similarity=0.031  Sum_probs=108.1

Q ss_pred             cHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHH----HHhcc-CCHHHHHHHHHHHHHhcCCCCCch
Q 021317           51 IPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLV----QILHS-GSVQGRVDAVTALHYLSTCKENSS  125 (314)
Q Consensus        51 v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv----~lL~~-~~~~~~~~a~~~L~nLs~~~~~~~  125 (314)
                      +..+..++ +...+.+.-++..++-+..++.....+.+.+.-..++    ..+.+ +.+..+--+++++.|+..++..+.
T Consensus       105 l~~l~kil-~WP~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~  183 (304)
T 3ebb_A          105 LQILWKAI-NCPEDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQK  183 (304)
T ss_dssp             HHHHHHHH-TSCTTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHH
T ss_pred             HHHHHHHH-cCCHHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHH
Confidence            34555555 4455556666666666665544444443332223333    33332 356678899999999999888877


Q ss_pred             hhhhc--CCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhc-CCHHHHHHHHHHHHHh
Q 021317          126 PILDA--TAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVED-GSLVSTQHAVGALLSL  202 (314)
Q Consensus       126 ~i~~~--g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~-~~~~~~~~A~~~L~~L  202 (314)
                      .+...  .+++.+...+.+  .+..++..+.+++.|++...-.....-.....+..+..++.. .+.+....++.+|.+|
T Consensus       184 ~l~~~~~~il~~~~~~~~~--~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL  261 (304)
T 3ebb_A          184 LMMSQRESLMSHAIELKSG--SNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTL  261 (304)
T ss_dssp             HHHHTHHHHHHHHHGGGSS--CCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcC--CChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence            77652  234444444333  244777788888999887522111110011133344444543 4678888999999999


Q ss_pred             hccCcHHHHHHHHHcCChHHHHHhhhc-CCHHHHHHHHHHH
Q 021317          203 CQSCRDKYRQLILKEGAIPGLLRLTVE-GTFEAQERARTLL  242 (314)
Q Consensus       203 ~~~~~~~~~~~i~~~g~v~~Lv~ll~~-~~~~~~~~A~~~L  242 (314)
                      ...++ +.++....-|+-..+-++... ..+++.+.|..++
T Consensus       262 ~~~~~-~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~  301 (304)
T 3ebb_A          262 ISDDS-NAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFIL  301 (304)
T ss_dssp             HTTCH-HHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHH
T ss_pred             HhCCh-hHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHH
Confidence            97653 444444445554444455544 3567777666555

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=96.28  E-value=0.024  Score=47.93  Aligned_cols=18  Identities=11%  Similarity=-0.306  Sum_probs=13.4

Q ss_pred             eeccccCCHHHHHHHHHH
Q 021317           14 VFMETYFEGYARRLNLMG   31 (314)
Q Consensus        14 v~~l~~~~~~~~~~a~~a   31 (314)
                      -.++.+++++++..+...
T Consensus        56 ~~ll~d~~~~VR~~AA~~   73 (244)
T 1lrv_A           56 VQYLADPFWERRAIAVRY   73 (244)
T ss_dssp             GGGTTCSSHHHHHHHHTT
T ss_pred             HHHhcCCCHHHHHHHHHh
Confidence            356678888888888865

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=96.08  E-value=0.14  Score=51.87  Aligned_cols=220  Identities=13%  Similarity=0.061  Sum_probs=122.1

Q ss_pred             cCCHHHHHHHHHHhH-hhccCchhHHHHHhc-----CCcHH----HHHHhcCC---CHHHHHHHHHHHHHhccCCCChhH
Q 021317           19 YFEGYARRLNLMGPL-WQLSKTRNKVKIATA-----GAIPP----LVELLKFQ---NGTLRELAAAAILTLSAAAPNKPA   85 (314)
Q Consensus        19 ~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~-----g~v~~----Lv~lL~~~---~~~~~~~a~~~L~~La~~~~~~~~   85 (314)
                      +++...++.|+.++. ++......... ...     ...+.    ++..|.++   ++-+|..|+++++.++..- ... 
T Consensus       416 ~~~w~~reaal~algaia~~~~~~~~~-~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~-  492 (960)
T 1wa5_C          416 SKNWKFKDLYIYLFTALAINGNITNAG-VSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKA-  492 (960)
T ss_dssp             --CHHHHHHHHHHHHHHHBSSCCBTTB-CCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHH-
T ss_pred             chhHHHHHHHHHHHHHHHHHhccccCC-cccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHH-
Confidence            566788999999888 54322111000 000     11222    33344555   8899999999999998752 122 


Q ss_pred             HhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC---------Cchhhhh--cCCcHHHHHHhhccCCc-hH--HHH
Q 021317           86 IAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKE---------NSSPILD--ATAVPPLINLLKDCKKY-SK--FAE  151 (314)
Q Consensus        86 i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~---------~~~~i~~--~g~i~~Lv~lL~~~~~~-~~--~~~  151 (314)
                       .-...++.+++.|.++++.++..|+.+|.+++...+         .+..+..  ...++.|+.++...... .+  ..+
T Consensus       493 -~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e  571 (960)
T 1wa5_C          493 -QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENE  571 (960)
T ss_dssp             -HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCH
T ss_pred             -HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccH
Confidence             124567888888888899999999999999986421         2333433  34666666777664100 00  112


Q ss_pred             HHHHHHHHhcCC--hhhhhHHHhccCCHHHHHHHhhc-----CCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHH
Q 021317          152 KATALLEILSSS--EEGRIAITNSDGGILTLVETVED-----GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLL  224 (314)
Q Consensus       152 ~a~~~L~~L~~~--~~~~~~i~~~~g~v~~Lv~ll~~-----~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv  224 (314)
                      .++.++..++..  .+... ..  ...++.|...+..     .++..+..++.++..++.....+.... .....+|.+.
T Consensus       572 ~l~~al~~vv~~~~~~~~p-~~--~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~-~~~~~~p~~~  647 (960)
T 1wa5_C          572 FLMRSIFRVLQTSEDSIQP-LF--PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPL-LVDSMMPTFL  647 (960)
T ss_dssp             HHHHHHHHHHHHHTTTTGG-GH--HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhh-HH--HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHH-HHHHHHHHHH
Confidence            344444433221  11111 11  1244455555532     345666778888888876522121222 2234567777


Q ss_pred             HhhhcCCHHHHHHHHHHHHHhh
Q 021317          225 RLTVEGTFEAQERARTLLDLLR  246 (314)
Q Consensus       225 ~ll~~~~~~~~~~A~~~L~~l~  246 (314)
                      ..+........+.+..++..+.
T Consensus       648 ~iL~~~~~~~~~~~~~i~~~l~  669 (960)
T 1wa5_C          648 TVFSEDIQEFIPYVFQIIAFVV  669 (960)
T ss_dssp             HHHHTTCTTTHHHHHHHHHHHH
T ss_pred             HHHHhhhHhhHHHHHHHHHHHH
Confidence            7776655556666666665554

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=95.96  E-value=0.16  Score=51.38  Aligned_cols=217  Identities=9%  Similarity=0.010  Sum_probs=117.9

Q ss_pred             HHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhc-----CCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHH
Q 021317           23 YARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLK-----FQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLV   96 (314)
Q Consensus        23 ~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~-----~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv   96 (314)
                      .++..++.++. ++...++.-... -...++..+..+.     ..+..+...++..+..++..+..+..+.....++.++
T Consensus       261 ~vk~~~~~~l~~l~~~~~~~f~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li  339 (960)
T 1wa5_C          261 KVKSSIQELVQLYTTRYEDVFGPM-INEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNIT  339 (960)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHH-HHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHH
Confidence            45666677766 444333211111 1233455555553     2356778888888888765433332222224455555


Q ss_pred             H-H----hc----c-----CC--------------HHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhc----cC
Q 021317           97 Q-I----LH----S-----GS--------------VQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKD----CK  144 (314)
Q Consensus        97 ~-l----L~----~-----~~--------------~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~----~~  144 (314)
                      + +    +.    +     ++              ...|..|..+|..|+..-.  ..+.. -.++.+...+..    ++
T Consensus       340 ~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~--~~v~~-~~l~~i~~~l~~~~~~~~  416 (960)
T 1wa5_C          340 EQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE--VLVTN-IFLAHMKGFVDQYMSDPS  416 (960)
T ss_dssp             HHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH--HHHHH-HHHHHHHHHHHHHHC---
T ss_pred             HHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc--hhHHH-HHHHHHHHHHHHhccCcc
Confidence            2 2    11    0     11              1346667777777774422  12211 122333333441    12


Q ss_pred             CchHHHHHHHHHHHHhcCChhhhhHHHh----ccCCH----HHHHHHhhcC---CHHHHHHHHHHHHHhhccCcHHHHHH
Q 021317          145 KYSKFAEKATALLEILSSSEEGRIAITN----SDGGI----LTLVETVEDG---SLVSTQHAVGALLSLCQSCRDKYRQL  213 (314)
Q Consensus       145 ~~~~~~~~a~~~L~~L~~~~~~~~~i~~----~~g~v----~~Lv~ll~~~---~~~~~~~A~~~L~~L~~~~~~~~~~~  213 (314)
                      .+...++.|+.++..++........-..    .....    ..++..+.+.   ++-+|..|++++..++..-+.   +.
T Consensus       417 ~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~---~~  493 (960)
T 1wa5_C          417 KNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTK---AQ  493 (960)
T ss_dssp             -CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCH---HH
T ss_pred             hhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCH---HH
Confidence            2336788999999888753211110000    00111    2334445655   789999999999999875332   22


Q ss_pred             HHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 021317          214 ILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDT  248 (314)
Q Consensus       214 i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~  248 (314)
                      +  ...++.+++.+.+.++.++.+|+.+|.+++..
T Consensus       494 l--~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~  526 (960)
T 1wa5_C          494 L--IELMPILATFLQTDEYVVYTYAAITIEKILTI  526 (960)
T ss_dssp             H--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             H--HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence            2  23577788888888899999999999999874

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=95.83  E-value=0.3  Score=41.60  Aligned_cols=181  Identities=13%  Similarity=0.062  Sum_probs=109.8

Q ss_pred             HHHHhccCCHHHHHHHHHHHHHhcCCCC---Cchhhh-hcC-CcHHHHHHhhccCCchHHHHHHHHHHHHhcCChh---h
Q 021317           95 LVQILHSGSVQGRVDAVTALHYLSTCKE---NSSPIL-DAT-AVPPLINLLKDCKKYSKFAEKATALLEILSSSEE---G  166 (314)
Q Consensus        95 Lv~lL~~~~~~~~~~a~~~L~nLs~~~~---~~~~i~-~~g-~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~---~  166 (314)
                      +-+-|.+.+-..|..++..|..+.....   ...... ..+ ..+.+-..+.+.+  ..+...++.++..++....   .
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN--~~v~~~al~~l~~~~~~~~~~~~   91 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN--VVAQEQAIVALNSLIDAFASSSL   91 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS--HHHHHHHHHHHHHHHTTCC---C
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch--HHHHHHHHHHHHHHHHHhhhhhc
Confidence            5577889999999999999888764321   111112 122 4455556676654  4788888888887765311   1


Q ss_pred             -hhH--HHhccCCHHHHHH-HhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHH
Q 021317          167 -RIA--ITNSDGGILTLVE-TVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLL  242 (314)
Q Consensus       167 -~~~--i~~~~g~v~~Lv~-ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L  242 (314)
                       +..  .. -...++.|+. .+.+....++..|..++..++.....  ...     .++.++..+.+.+|.++..+...|
T Consensus        92 ~~~~~~~~-~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~--~~~-----~~e~l~~~l~~Knpkv~~~~l~~l  163 (278)
T 4ffb_C           92 KNAHNITL-ISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS--ITQ-----SVELVIPFFEKKLPKLIAAAANCV  163 (278)
T ss_dssp             CHHHHHHH-HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS--SHH-----HHHHHGGGGGCSCHHHHHHHHHHH
T ss_pred             ccchhHHH-HHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc--HHH-----HHHHHHHHHhccCHHHHHHHHHHH
Confidence             111  11 1345677765 46677788999999888877654311  111     345667778889999999988777


Q ss_pred             HHhhc-CCchhhcc-----hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q 021317          243 DLLRD-TPQEKRLS-----SSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQ  289 (314)
Q Consensus       243 ~~l~~-~~~~~~~~-----~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~  289 (314)
                      ..+-. .... ...     ..+++.+...+   .+.+..+|+.|..++..+-+
T Consensus       164 ~~~l~~fg~~-~~~~k~~l~~i~~~l~k~l---~d~~~~VR~aA~~l~~~ly~  212 (278)
T 4ffb_C          164 YELMAAFGLT-NVNVQTFLPELLKHVPQLA---GHGDRNVRSQTMNLIVEIYK  212 (278)
T ss_dssp             HHHHHHHTTT-TCCHHHHHHHHGGGHHHHH---TCSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhCCC-cCCchhHHHHHHHHHHHHH---hCCcHHHHHHHHHHHHHHHH
Confidence            76543 2211 111     11233333333   36678899999988876653

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=95.52  E-value=0.2  Score=42.72  Aligned_cols=184  Identities=11%  Similarity=-0.006  Sum_probs=113.2

Q ss_pred             ccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCc-HHHHHHhcCCCHHHHHHHHHHHHHhcc---CCCChhHHhh-c
Q 021317           16 METYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAI-PPLVELLKFQNGTLRELAAAAILTLSA---AAPNKPAIAA-S   89 (314)
Q Consensus        16 ~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v-~~Lv~lL~~~~~~~~~~a~~~L~~La~---~~~~~~~i~~-~   89 (314)
                      .+-+.|...+.+|+..|. ....+++  ..+...+.+ +-+.-.+.+.+..+...++.+|..+..   ..+.+-.-.+ .
T Consensus        54 ~lfs~d~k~~~~ale~L~~~l~~~~~--~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~  131 (266)
T 2of3_A           54 QLFHKDFKQHLAALDSLVRLADTSPR--SLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVS  131 (266)
T ss_dssp             HHTCSCHHHHHHHHHHHHHHHHHCHH--HHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred             HhcCCCHHHHHHHHHHHHHHhhhChH--HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence            344557778888888877 4433322  222222221 111112235688888888887777643   1121111111 3


Q ss_pred             CcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhH
Q 021317           90 GAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIA  169 (314)
Q Consensus        90 g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~  169 (314)
                      -.+|.|+.-+-++.+.+|..+-.+|..+..-.      --....+.+++-+++.+  .+.++.++..+..+-......  
T Consensus       132 ~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~------~~~~v~~~l~~g~ksKN--~R~R~e~l~~l~~li~~~G~~--  201 (266)
T 2of3_A          132 AFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV------GPLKMTPMLLDALKSKN--ARQRSECLLVIEYYITNAGIS--  201 (266)
T ss_dssp             HHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH------CHHHHHHHHHHGGGCSC--HHHHHHHHHHHHHHHHHHCSG--
T ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHccCC--HHHHHHHHHHHHHHHHhcCCC--
Confidence            47899999998888999999888887775310      11235666777777754  377788887777654332111  


Q ss_pred             HHhccCCH---HHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHH
Q 021317          170 ITNSDGGI---LTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLI  214 (314)
Q Consensus       170 i~~~~g~v---~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i  214 (314)
                         ...++   +.+..++.+.+..+|..|+.++..+-....+.....+
T Consensus       202 ---~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~l  246 (266)
T 2of3_A          202 ---PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAA  246 (266)
T ss_dssp             ---GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred             ---ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence               13467   9999999999999999999999877655433444333

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=95.37  E-value=1.3  Score=38.82  Aligned_cols=204  Identities=14%  Similarity=0.113  Sum_probs=147.0

Q ss_pred             HHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC-CCCchhhhh--cCCcHHHHHHhhccCCchHHHHHHHHHHHHhc
Q 021317           85 AIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC-KENSSPILD--ATAVPPLINLLKDCKKYSKFAEKATALLEILS  161 (314)
Q Consensus        85 ~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~  161 (314)
                      .+...+.+..|+..|..=+-+.|..+..+..++... .+++...++  .. =+.++..|-.|.+.+++.-.+...|....
T Consensus        73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~-~peil~~L~~gYe~~diAl~~G~mLReci  151 (341)
T 1upk_A           73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT-QQNILFMLLKGYESPEIALNCGIMLRECI  151 (341)
T ss_dssp             HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT-CTHHHHHHHHGGGSTTTHHHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc-CHHHHHHHHHhhccchhHhHHHHHHHHHH
Confidence            346679999999999999999999999999998854 344444433  12 35555555555555577778888899999


Q ss_pred             CChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHc---CChHHHHHhhhcCCHHHHHHH
Q 021317          162 SSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKE---GAIPGLLRLTVEGTFEAQERA  238 (314)
Q Consensus       162 ~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~---g~v~~Lv~ll~~~~~~~~~~A  238 (314)
                      .+....+.+. ..+.+-.+...+..++=++...|..++..|-.... .....+...   -.....-+++.+++--+++.+
T Consensus       152 r~e~la~~iL-~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk-~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQS  229 (341)
T 1upk_A          152 RHEPLAKIIL-WSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHK-LLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQS  229 (341)
T ss_dssp             TSHHHHHHHH-HSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSH-HHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred             HhHHHHHHHh-ccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccH-HHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHH
Confidence            9988888888 67889999999999998898999999987755543 344455443   356677778999999999999


Q ss_pred             HHHHHHhhcCCc--h---hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 021317          239 RTLLDLLRDTPQ--E---KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMEL  294 (314)
Q Consensus       239 ~~~L~~l~~~~~--~---~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~~~  294 (314)
                      ..+|..+--.+.  .   +.+...---.++..|.  .+.+...+-.|=-+.+-+++ +|++
T Consensus       230 lKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL--~d~sk~Iq~EAFhVFKvFVA-NP~K  287 (341)
T 1upk_A          230 LKLLGELLLDRHNFTIMTKYISKPENLKLMMNLL--RDKSRNIQFEAFHVFKVFVA-NPNK  287 (341)
T ss_dssp             HHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHT--TCSCHHHHHHHHHHHHHHHH-CSSC
T ss_pred             HHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHh--cCchhchhhhhhhheeeeee-CCCC
Confidence            999999865442  2   2222222223333333  57778899999999999996 4433

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=95.27  E-value=0.03  Score=47.28  Aligned_cols=62  Identities=15%  Similarity=0.073  Sum_probs=34.1

Q ss_pred             HHHHhhcCCHHHHHHHHHHH-----HHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHH
Q 021317          180 LVETVEDGSLVSTQHAVGAL-----LSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTL  241 (314)
Q Consensus       180 Lv~ll~~~~~~~~~~A~~~L-----~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~  241 (314)
                      +..++++.+..++..++..+     ..+..+...++|..+...-..+.|..++.+.+..++..++..
T Consensus       151 l~~l~~D~d~~VR~~aa~~l~~~ll~~ll~D~d~~VR~aaa~~l~~~~L~~Ll~D~d~~VR~~aa~~  217 (244)
T 1lrv_A          151 LFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEH  217 (244)
T ss_dssp             GGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHCCGGGGGGGGGCSSHHHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHhCCHHHHHHHHcCCCHHHHHHHHHc
Confidence            33455566666666666542     122233333455555554445666667777777777666654

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=95.25  E-value=0.028  Score=52.69  Aligned_cols=185  Identities=12%  Similarity=0.013  Sum_probs=120.8

Q ss_pred             HHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHh-hcCcHHHHHHHhc
Q 021317           22 GYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIA-ASGAAPLLVQILH  100 (314)
Q Consensus        22 ~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~-~~g~l~~Lv~lL~  100 (314)
                      ..+||.+..+|..+..-++.      ..++..++..+..+..+++..++-.|..+.      ..+. =.++++.++..|.
T Consensus       242 APVRETaAQtLGaL~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~------DLL~~Ld~Vv~aVL~GL~  309 (800)
T 3oc3_A          242 APVRDAAAYLLSRIYPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLK------EFVEDKDGLCRKLVSLLS  309 (800)
T ss_dssp             CHHHHHHHHHHHHHTTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG------GGCCCHHHHHHHHHHHTT
T ss_pred             eehHHHHHHHHHHHHhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHH------HHHHHHHHHHHHHHhhcC
Confidence            56788888888822332222      334444444556778999999998998881      1111 2567888999999


Q ss_pred             cCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHh----hccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCC
Q 021317          101 SGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLL----KDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGG  176 (314)
Q Consensus       101 ~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL----~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~  176 (314)
                      +.+.+++..|+.+|..++ .+         +.++.++..+    .+.++-..-....+.+|..|+..+..  ... ....
T Consensus       310 D~DDDVRAVAAetLiPIA-~p---------~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~-dp~L  376 (800)
T 3oc3_A          310 SPDEDIKLLSAELLCHFP-IT---------DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSI-PPER  376 (800)
T ss_dssp             CSSHHHHHHHHHHHTTSC-CS---------STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCC-CSGG
T ss_pred             CcccHHHHHHHHHhhhhc-ch---------hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--ccc-ChHH
Confidence            999999999999999988 22         2344444333    33221112234566777777776632  122 3578


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHH-hhhcCCHHHHHHHHHHHH
Q 021317          177 ILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLR-LTVEGTFEAQERARTLLD  243 (314)
Q Consensus       177 v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~-ll~~~~~~~~~~A~~~L~  243 (314)
                      ||.|..++++....+|..++.+|..+.  ...          .++.+-+ ++-..++.+++.+..+-.
T Consensus       377 VPRL~PFLRHtITSVR~AVL~TL~tfL--~~~----------~LRLIFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          377 LKDIFPCFTSPVPEVRTSILNMVKNLS--EES----------IDFLVAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             GGGTGGGGTCSSHHHHHHHHHHTTTCC--CHH----------HHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHHHHhhhcCCcHHHHHHHHHHHHHHH--hhh----------HHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            999999999999999999999998877  211          2333333 555677777777666553

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=95.19  E-value=0.14  Score=44.69  Aligned_cols=173  Identities=9%  Similarity=-0.013  Sum_probs=100.7

Q ss_pred             HHHHHHHHHhHhhccCchhHHHHHhcCCcHHHH----HHhcC-CCHHHHHHHHHHHHHhccCCCChhHHhhc--CcHHHH
Q 021317           23 YARRLNLMGPLWQLSKTRNKVKIATAGAIPPLV----ELLKF-QNGTLRELAAAAILTLSAAAPNKPAIAAS--GAAPLL   95 (314)
Q Consensus        23 ~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv----~lL~~-~~~~~~~~a~~~L~~La~~~~~~~~i~~~--g~l~~L   95 (314)
                      +.+.-++..++++.-++..-..+.+.+.-..++    ..+.+ ..+..+.-++++++|+-.++..+..+...  ..++.+
T Consensus       117 ~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~  196 (304)
T 3ebb_A          117 DIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHA  196 (304)
T ss_dssp             TTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHH
Confidence            445556665665555565555555433323333    33332 35667889999999999988777776642  344555


Q ss_pred             HHHhccCCHHHHHHHHHHHHHhcCCC-CCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhcc
Q 021317           96 VQILHSGSVQGRVDAVTALHYLSTCK-ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSD  174 (314)
Q Consensus        96 v~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~  174 (314)
                      ...+.+++..++..++.++.|++..- ..+..=....++..+..+++.. .+.+....++-+|.+|...+.....+.+.-
T Consensus       197 ~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~-~d~EalyR~LvALGtL~~~~~~~~~lak~l  275 (304)
T 3ebb_A          197 IELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVV-QDLEATFRLLVALGTLISDDSNAVQLAKSL  275 (304)
T ss_dssp             HGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHhCChhHHHHHHHc
Confidence            55555678999999999999998421 1111000112444455555543 344677788888999887655555555334


Q ss_pred             CCHHHHHHHhhc-CCHHHHHHHH
Q 021317          175 GGILTLVETVED-GSLVSTQHAV  196 (314)
Q Consensus       175 g~v~~Lv~ll~~-~~~~~~~~A~  196 (314)
                      |.-..+-+..+. .+.++.+.|-
T Consensus       276 ~~~~~v~~~~~~~~~~kv~~~~~  298 (304)
T 3ebb_A          276 GVDSQIKKYSSVSEPAKVSECCR  298 (304)
T ss_dssp             THHHHGGGGGGCCSSHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCchhHHHHHH
Confidence            433333333333 3455555443

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=94.85  E-value=0.53  Score=40.04  Aligned_cols=178  Identities=9%  Similarity=0.103  Sum_probs=112.5

Q ss_pred             cHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHH----hccCCHHHHHHHHHHHHHhcCC-CCCch
Q 021317           51 IPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQI----LHSGSVQGRVDAVTALHYLSTC-KENSS  125 (314)
Q Consensus        51 v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~l----L~~~~~~~~~~a~~~L~nLs~~-~~~~~  125 (314)
                      =+.+...|.+.+...+..|+..|......  +...+.  ..+..+.+.    +.+.+..+...++..|..+... .+.-.
T Consensus        48 ~~~~~~~lfs~d~k~~~~ale~L~~~l~~--~~~~~~--~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y  123 (266)
T 2of3_A           48 KVSLMSQLFHKDFKQHLAALDSLVRLADT--SPRSLL--SNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET  123 (266)
T ss_dssp             CHHHHHHHTCSCHHHHHHHHHHHHHHHHH--CHHHHH--HTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHhcCCCHHHHHHHHHHHHHHhhh--ChHHHH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence            34566666666777777777777664321  111211  122223332    3477888888888888776421 11101


Q ss_pred             hhhh---cCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 021317          126 PILD---ATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSL  202 (314)
Q Consensus       126 ~i~~---~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L  202 (314)
                      .+.+   .-.+|.|++-+.+..+  .+++.+-.++..++..       ..-...++.++.-+++.+...++.++..+..+
T Consensus       124 ~~~~~ea~~~lP~LveKlGd~k~--~vR~~~r~il~~l~~v-------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~l  194 (266)
T 2of3_A          124 PMSQEEVSAFVPYLLLKTGEAKD--NMRTSVRDIVNVLSDV-------VGPLKMTPMLLDALKSKNARQRSECLLVIEYY  194 (266)
T ss_dssp             CCCHHHHHHHHHHHHHGGGCSSH--HHHHHHHHHHHHHHHH-------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHhCCChH--HHHHHHHHHHHHHHHH-------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence            1221   2377888888876543  7777777777665432       11223455677788888999999999998887


Q ss_pred             hccCcHHHHHHHHHcCCh---HHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 021317          203 CQSCRDKYRQLILKEGAI---PGLLRLTVEGTFEAQERARTLLDLLRD  247 (314)
Q Consensus       203 ~~~~~~~~~~~i~~~g~v---~~Lv~ll~~~~~~~~~~A~~~L~~l~~  247 (314)
                      -....-  .    ...++   +.+..++.+.+..+|..|..++-.+-.
T Consensus       195 i~~~G~--~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~  236 (266)
T 2of3_A          195 ITNAGI--S----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK  236 (266)
T ss_dssp             HHHHCS--G----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred             HHhcCC--C----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            643211  1    23478   999999999999999999988876644

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=94.12  E-value=0.22  Score=50.90  Aligned_cols=143  Identities=13%  Similarity=0.075  Sum_probs=85.2

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCc-hhhhhcCCcHHHHHHhhccCC---chHHHHHHHHHHHHhcCChhhhhHHHhccCCH
Q 021317          102 GSVQGRVDAVTALHYLSTCKENS-SPILDATAVPPLINLLKDCKK---YSKFAEKATALLEILSSSEEGRIAITNSDGGI  177 (314)
Q Consensus       102 ~~~~~~~~a~~~L~nLs~~~~~~-~~i~~~g~i~~Lv~lL~~~~~---~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v  177 (314)
                      .+...++.++++++.++...... ..-.=..+++.|+.++.....   ...++..++.+++..+..-.......  ...+
T Consensus       465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L--~~vl  542 (1023)
T 4hat_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL--RTVI  542 (1023)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH--HHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH--HHHH
Confidence            46889999999999999654321 211113477888888864221   11233334455544443322222333  2355


Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHH------cCChHHHHH----hhhcCCHHHHHHHHHHHHHhhc
Q 021317          178 LTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK------EGAIPGLLR----LTVEGTFEAQERARTLLDLLRD  247 (314)
Q Consensus       178 ~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~------~g~v~~Lv~----ll~~~~~~~~~~A~~~L~~l~~  247 (314)
                      ..|+..|.+.++.+++.|++++.+||...    +..+..      ...++.+++    ....-++........++..+..
T Consensus       543 ~~L~~~l~~~~~~v~~~A~~al~~l~~~c----~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~  618 (1023)
T 4hat_C          543 LKLFEFMHETHEGVQDMACDTFIKIVQKC----KYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS  618 (1023)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHHHH----THHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHHHH----HHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            66777776677899999999999999643    444542      123444443    3333466667777778888776


Q ss_pred             CCc
Q 021317          248 TPQ  250 (314)
Q Consensus       248 ~~~  250 (314)
                      ..+
T Consensus       619 ~~~  621 (1023)
T 4hat_C          619 EER  621 (1023)
T ss_dssp             TCC
T ss_pred             hCC
Confidence            554

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=94.00  E-value=0.8  Score=40.45  Aligned_cols=112  Identities=13%  Similarity=0.108  Sum_probs=83.8

Q ss_pred             HHHhccCCC-ChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHH
Q 021317           73 ILTLSAAAP-NKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAE  151 (314)
Q Consensus        73 L~~La~~~~-~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~  151 (314)
                      |.||-.++. .-..+++..|+..+.....-++.++....+..|.-.+.....+..=. ...+|.++..+.-.. +.++.-
T Consensus       266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L-~e~LPFi~~~i~~h~-eDdvvY  343 (619)
T 3c2g_A          266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL-ENILPFLLRLIEIHP-DDEVIY  343 (619)
T ss_dssp             HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC-TTHHHHHHHHHHHCC-CHHHHH
T ss_pred             HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc-cccchHHHHHhccCC-CcceEE
Confidence            455555654 46678899999999999999999999999999888876543332211 357888888887643 448888


Q ss_pred             HHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhc
Q 021317          152 KATALLEILSSSEEGRIAITNSDGGILTLVETVED  186 (314)
Q Consensus       152 ~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~  186 (314)
                      ..++.|+|+..+...-+.+.-..|+|+.|-..+..
T Consensus       344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~k  378 (619)
T 3c2g_A          344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISK  378 (619)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHT
T ss_pred             ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhh
Confidence            99999999999866544443368999998887753

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=93.95  E-value=0.5  Score=39.35  Aligned_cols=161  Identities=14%  Similarity=0.139  Sum_probs=102.9

Q ss_pred             HHHHHhH-hhccCchhH-HHHHhcCCcHHHHHHhcC----C-------CHHHHHHHHHHHHHhccCCCChhHHh-hcCcH
Q 021317           27 LNLMGPL-WQLSKTRNK-VKIATAGAIPPLVELLKF----Q-------NGTLRELAAAAILTLSAAAPNKPAIA-ASGAA   92 (314)
Q Consensus        27 ~a~~al~-l~~~~~~~~-~~l~~~g~v~~Lv~lL~~----~-------~~~~~~~a~~~L~~La~~~~~~~~i~-~~g~l   92 (314)
                      ..+..|. .+..++..+ ..+ ..+|+..|+..|..    +       +.+.+..++.+|..+..+..+...+. .++++
T Consensus        20 ~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i   98 (233)
T 2f31_A           20 SCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGI   98 (233)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHH
T ss_pred             HHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHH
Confidence            3455555 334444444 444 57888888888842    1       24566778889988877665555554 67889


Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHHhcCCCC--C-chhhhh----------cCCcHHHHHHhhccCCchHHHHHHHHHHHH
Q 021317           93 PLLVQILHSGSVQGRVDAVTALHYLSTCKE--N-SSPILD----------ATAVPPLINLLKDCKKYSKFAEKATALLEI  159 (314)
Q Consensus        93 ~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~--~-~~~i~~----------~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~  159 (314)
                      ..++..|.++++.++..++..|.-+|..++  + ...+.+          ..-...+++.+.... ..++...++..+-.
T Consensus        99 ~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~-~~e~~~~~m~lIN~  177 (233)
T 2f31_A           99 LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGT-SIALKVGCLQLINA  177 (233)
T ss_dssp             HHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTS-CHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCC-hHHHHHHHHHHHHH
Confidence            999999999999999999999988885543  5 443332          235667888776533 34677777777766


Q ss_pred             hcCChhh-------hhHHHhccCCHHHHHHHhhc-CCHHH
Q 021317          160 LSSSEEG-------RIAITNSDGGILTLVETVED-GSLVS  191 (314)
Q Consensus       160 L~~~~~~-------~~~i~~~~g~v~~Lv~ll~~-~~~~~  191 (314)
                      +....+.       |..+. ..| +..++.-++. +++.+
T Consensus       178 li~~~~dl~~R~~lR~ef~-~~G-l~~il~~l~~~~~~~L  215 (233)
T 2f31_A          178 LITPAEELDFRVHIRSELM-RLG-LHQVLQELREIENEDM  215 (233)
T ss_dssp             HHTTCCCHHHHHHHHHHHH-HTT-HHHHHHHHHHCCCHHH
T ss_pred             HHCCCCCHHHHHHHHHHHH-HCC-hHHHHHHHhccCCHHH
Confidence            6655432       44444 344 4444454443 44443

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=93.87  E-value=3.5  Score=36.99  Aligned_cols=161  Identities=14%  Similarity=0.134  Sum_probs=106.0

Q ss_pred             HHHHHhH-hhccCchhH-HHHHhcCCcHHHHHHhcC-----------CCHHHHHHHHHHHHHhccCCCChhHHh-hcCcH
Q 021317           27 LNLMGPL-WQLSKTRNK-VKIATAGAIPPLVELLKF-----------QNGTLRELAAAAILTLSAAAPNKPAIA-ASGAA   92 (314)
Q Consensus        27 ~a~~al~-l~~~~~~~~-~~l~~~g~v~~Lv~lL~~-----------~~~~~~~~a~~~L~~La~~~~~~~~i~-~~g~l   92 (314)
                      +.+..|. .+...+..+ ..++ .+|+..|+.+|..           .+...+..++.+|..+..+..+...+. ...++
T Consensus        86 ~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i  164 (383)
T 3eg5_B           86 SCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGI  164 (383)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHH
T ss_pred             HHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHH
Confidence            3455666 334444444 4554 6788999998841           134667788889998877765555554 67899


Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHHhcCCCC--C-chhhh----------hcCCcHHHHHHhhccCCchHHHHHHHHHHHH
Q 021317           93 PLLVQILHSGSVQGRVDAVTALHYLSTCKE--N-SSPIL----------DATAVPPLINLLKDCKKYSKFAEKATALLEI  159 (314)
Q Consensus        93 ~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~--~-~~~i~----------~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~  159 (314)
                      ..++..|.+.++.++..++..|.-+|..++  + ...+.          +..-...++..+.... ..++...++..+-.
T Consensus       165 ~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~-~~e~~~~~m~lIN~  243 (383)
T 3eg5_B          165 LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGT-SIALKVGCLQLINA  243 (383)
T ss_dssp             HHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTS-CHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccC-cHHHHHHHHHHHHH
Confidence            999999999999999999999999885543  4 33333          2356788888887743 34777778887776


Q ss_pred             hcCChhh-------hhHHHhccCCHHHHHHHhhcC-CHHH
Q 021317          160 LSSSEEG-------RIAITNSDGGILTLVETVEDG-SLVS  191 (314)
Q Consensus       160 L~~~~~~-------~~~i~~~~g~v~~Lv~ll~~~-~~~~  191 (314)
                      +....+.       |..+. ..| +..++.-|+.. ++.+
T Consensus       244 li~~~~dl~~R~~lR~ef~-~~G-l~~il~~lr~~~~~~L  281 (383)
T 3eg5_B          244 LITPAEELDFRVHIRSELM-RLG-LHQVLQELREIENEDM  281 (383)
T ss_dssp             HHTTCCCHHHHHHHHHHHH-HTT-HHHHHHHHTTSCCHHH
T ss_pred             HHcCCCCHHHHHHHHHHHH-HCC-hHHHHHHHhcCCChhH
Confidence            6665332       44444 354 44445556543 4443

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=93.70  E-value=1.5  Score=44.17  Aligned_cols=132  Identities=15%  Similarity=0.107  Sum_probs=80.7

Q ss_pred             CCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHh---c--cCCHHHHHHHHHHHHHhcCC-CCCchhhhhcCCcH
Q 021317           61 QNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQIL---H--SGSVQGRVDAVTALHYLSTC-KENSSPILDATAVP  134 (314)
Q Consensus        61 ~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL---~--~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~  134 (314)
                      .+...++.++.+++.++..-....    ...++.++.++   .  ++++.++..++++|..++.. ..+...+-  .+++
T Consensus       476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~--~vl~  549 (971)
T 2x1g_F          476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP--PAIN  549 (971)
T ss_dssp             TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH--HHHH
T ss_pred             CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH--HHHH
Confidence            456678889999999876422111    23445555544   2  35899999999999998842 22222111  2456


Q ss_pred             HHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHh-ccCCHHHHHHHhhcC--CHHHHHHHHHHHHHhhcc
Q 021317          135 PLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITN-SDGGILTLVETVEDG--SLVSTQHAVGALLSLCQS  205 (314)
Q Consensus       135 ~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~~g~v~~Lv~ll~~~--~~~~~~~A~~~L~~L~~~  205 (314)
                      .|+..| +  +  .+...|+.++.+++..  .+..+.. -...+..+..++..+  +...+..+..++..++..
T Consensus       550 ~l~~~l-~--~--~v~~~A~~al~~l~~~--~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~  616 (971)
T 2x1g_F          550 LLVRGL-N--S--SMSAQATLGLKELCRD--CQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL  616 (971)
T ss_dssp             HHHHHH-H--S--SCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHh-C--h--HHHHHHHHHHHHHHHH--HHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence            666666 2  2  5678899999999843  2333321 123555666777663  467888888888888754

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=93.60  E-value=0.33  Score=40.44  Aligned_cols=104  Identities=16%  Similarity=0.175  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHH-HHHHH----------H
Q 021317          148 KFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKY-RQLIL----------K  216 (314)
Q Consensus       148 ~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~-~~~i~----------~  216 (314)
                      .....++.+|..+..+..+...+..+.+.+..+...|.+.++.++..++..|..+|..+.+++ ...+.          +
T Consensus        69 ~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e  148 (233)
T 2f31_A           69 RNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDE  148 (233)
T ss_dssp             HHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCC
Confidence            556778899999999998888888778889999999988889999999999998887643112 22222          2


Q ss_pred             cCChHHHHHhhhc-CCHHHHHHHHHHHHHhhcCCch
Q 021317          217 EGAIPGLLRLTVE-GTFEAQERARTLLDLLRDTPQE  251 (314)
Q Consensus       217 ~g~v~~Lv~ll~~-~~~~~~~~A~~~L~~l~~~~~~  251 (314)
                      ..-...+++.++. .+.+.+..+...+..+..++++
T Consensus       149 ~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~d  184 (233)
T 2f31_A          149 VERFQPLLDGLKSGTSIALKVGCLQLINALITPAEE  184 (233)
T ss_dssp             SCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCC
T ss_pred             cchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCC
Confidence            2356667776663 4566777777777777776643

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=93.38  E-value=0.55  Score=42.30  Aligned_cols=125  Identities=17%  Similarity=0.197  Sum_probs=91.8

Q ss_pred             hhhhhcCCcHHHHHHhhcc---------CCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHH
Q 021317          125 SPILDATAVPPLINLLKDC---------KKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHA  195 (314)
Q Consensus       125 ~~i~~~g~i~~Lv~lL~~~---------~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A  195 (314)
                      ..++ .+|+..|+++|..-         ..+......++.+|..+..+..+...+..+...|..+...+.+..+.++..+
T Consensus       104 ~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~a  182 (383)
T 3eg5_B          104 QTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDA  182 (383)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHH
T ss_pred             HHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHH
Confidence            3444 56788888888531         1223556778999999999999988888788999999999999999999999


Q ss_pred             HHHHHHhhccCc-HHHHHHHHH----------cCChHHHHHhhhc-CCHHHHHHHHHHHHHhhcCCc
Q 021317          196 VGALLSLCQSCR-DKYRQLILK----------EGAIPGLLRLTVE-GTFEAQERARTLLDLLRDTPQ  250 (314)
Q Consensus       196 ~~~L~~L~~~~~-~~~~~~i~~----------~g~v~~Lv~ll~~-~~~~~~~~A~~~L~~l~~~~~  250 (314)
                      +..|..+|..+. ..+...+.+          ..-...++..++. .+...+..+...+..+..+++
T Consensus       183 leLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~  249 (383)
T 3eg5_B          183 AKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAE  249 (383)
T ss_dssp             HHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCC
Confidence            999999997653 111233222          3457788887776 467777777778877877664

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=93.27  E-value=2.2  Score=38.35  Aligned_cols=105  Identities=17%  Similarity=0.177  Sum_probs=77.9

Q ss_pred             hHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHH-HHHHH----------
Q 021317          147 SKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKY-RQLIL----------  215 (314)
Q Consensus       147 ~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~-~~~i~----------  215 (314)
                      ......++.+|..+..+..+...+..+.+++..+...|.+.++.++..++..|..+|..+.+++ ...+.          
T Consensus        72 ~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~  151 (386)
T 2bnx_A           72 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMD  151 (386)
T ss_dssp             HHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhC
Confidence            3556778899999999988888888778899999999988889999999999988887653122 22222          


Q ss_pred             HcCChHHHHHhhh-cCCHHHHHHHHHHHHHhhcCCch
Q 021317          216 KEGAIPGLLRLTV-EGTFEAQERARTLLDLLRDTPQE  251 (314)
Q Consensus       216 ~~g~v~~Lv~ll~-~~~~~~~~~A~~~L~~l~~~~~~  251 (314)
                      +..-...|+..++ +.+...+..+...+..+..+++.
T Consensus       152 e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~d  188 (386)
T 2bnx_A          152 EVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEE  188 (386)
T ss_dssp             TSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSC
T ss_pred             chhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCC
Confidence            2235667888766 44567777777788778777653

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=93.04  E-value=2.9  Score=42.09  Aligned_cols=134  Identities=13%  Similarity=0.051  Sum_probs=83.2

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHh---hccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHH
Q 021317          102 GSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLL---KDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGIL  178 (314)
Q Consensus       102 ~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL---~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~  178 (314)
                      .+...++.++.++..++.......    ...++.++.++   ...+..+.++..++.++..++..-.......  ...++
T Consensus       476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~  549 (971)
T 2x1g_F          476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAIN  549 (971)
T ss_dssp             TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHHH
T ss_pred             CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHH
Confidence            466788999999999985432111    12344444444   2112245788888888887775522211222  23667


Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHH--cCChHHHHHhhhc--CCHHHHHHHHHHHHHhhcC
Q 021317          179 TLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK--EGAIPGLLRLTVE--GTFEAQERARTLLDLLRDT  248 (314)
Q Consensus       179 ~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~--~g~v~~Lv~ll~~--~~~~~~~~A~~~L~~l~~~  248 (314)
                      .++..| +  +.++..|+.++.++|...+    ..+..  ...+..|.+++..  -+...+.....++..+...
T Consensus       550 ~l~~~l-~--~~v~~~A~~al~~l~~~~~----~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~  616 (971)
T 2x1g_F          550 LLVRGL-N--SSMSAQATLGLKELCRDCQ----LQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL  616 (971)
T ss_dssp             HHHHHH-H--SSCHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHh-C--hHHHHHHHHHHHHHHHHHH----HhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence            777777 3  6789999999999996553    33332  3456666677776  3578888888888887654

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=92.96  E-value=6.6  Score=39.36  Aligned_cols=136  Identities=10%  Similarity=0.094  Sum_probs=86.5

Q ss_pred             cCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHh---ccCCHHHHHHHHHHHHHhcCC-CCCchhhhhcCCcH
Q 021317           59 KFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQIL---HSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVP  134 (314)
Q Consensus        59 ~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL---~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~  134 (314)
                      .+.+...++.++.+++.++..-..    .....++.++..+   .++++.++..++++|...+.. .++. ... ..+++
T Consensus       459 ~~~~w~~~eaal~al~~i~~~~~~----~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl~  532 (963)
T 2x19_B          459 EPYSWQHTEALLYGFQSIAETIDV----NYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-NSVLP  532 (963)
T ss_dssp             CSCCHHHHHHHHHHHHHHTTSCCS----SCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTHH
T ss_pred             CCCchHHHHHHHHHHHHHHhhcCc----hhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHHH
Confidence            445677889999999999875221    0123445555554   335788999999999998842 2222 122 35788


Q ss_pred             HHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHh-ccCCHHHHHHHhhc--CCHHHHHHHHHHHHHhhccC
Q 021317          135 PLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITN-SDGGILTLVETVED--GSLVSTQHAVGALLSLCQSC  206 (314)
Q Consensus       135 ~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~~g~v~~Lv~ll~~--~~~~~~~~A~~~L~~L~~~~  206 (314)
                      .++..|.+    +.++..|+.++.+++..  .+..+.. -...++.+..++..  -+...+..+..++..++...
T Consensus       533 ~l~~~l~~----~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~  601 (963)
T 2x19_B          533 LVLHALGN----PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSAL  601 (963)
T ss_dssp             HHHHHTTC----GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHhCC----chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcC
Confidence            88888854    36778899999999842  2333321 01233444555554  24678888889998887644

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=92.64  E-value=4.3  Score=40.72  Aligned_cols=138  Identities=12%  Similarity=0.114  Sum_probs=88.1

Q ss_pred             ccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhc-cCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHH
Q 021317          100 HSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKD-CKKYSKFAEKATALLEILSSSEEGRIAITNSDGGIL  178 (314)
Q Consensus       100 ~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~  178 (314)
                      .+.+...++.++.+|..++......    ....++.++..+.. ..+.+.++..++.++..++..-.......  ...++
T Consensus       459 ~~~~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l--~~vl~  532 (963)
T 2x19_B          459 EPYSWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI--NSVLP  532 (963)
T ss_dssp             CSCCHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH--TTTHH
T ss_pred             CCCchHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH--HHHHH
Confidence            4457788999999999998543211    02234455554432 11345788888888887776532222444  46889


Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHH--cCChHHHHHhhhc--CCHHHHHHHHHHHHHhhcCC
Q 021317          179 TLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK--EGAIPGLLRLTVE--GTFEAQERARTLLDLLRDTP  249 (314)
Q Consensus       179 ~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~--~g~v~~Lv~ll~~--~~~~~~~~A~~~L~~l~~~~  249 (314)
                      .++..|.+  +.++..|+.+|.++|...+    ..+..  ...++.|..++..  -+...+.....++..+....
T Consensus       533 ~l~~~l~~--~~V~~~A~~al~~l~~~~~----~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~  601 (963)
T 2x19_B          533 LVLHALGN--PELSVSSVSTLKKICRECK----YDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSAL  601 (963)
T ss_dssp             HHHHHTTC--GGGHHHHHHHHHHHHHHTG----GGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHhCC--chHHHHHHHHHHHHHHHHH----HHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcC
Confidence            99998854  7899999999999996542    22221  2234444455554  25678888888888887544

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=92.06  E-value=2.2  Score=38.38  Aligned_cols=160  Identities=14%  Similarity=0.144  Sum_probs=103.4

Q ss_pred             HHHHhH-hhccCchhH-HHHHhcCCcHHHHHHhcC----C-------CHHHHHHHHHHHHHhccCCCChhHHh-hcCcHH
Q 021317           28 NLMGPL-WQLSKTRNK-VKIATAGAIPPLVELLKF----Q-------NGTLRELAAAAILTLSAAAPNKPAIA-ASGAAP   93 (314)
Q Consensus        28 a~~al~-l~~~~~~~~-~~l~~~g~v~~Lv~lL~~----~-------~~~~~~~a~~~L~~La~~~~~~~~i~-~~g~l~   93 (314)
                      .+..|. .+...+..+ ..+ ..+|+..|+.+|..    +       +.+.+..++.+|..+..+..+...+. .++++.
T Consensus        25 ~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~  103 (386)
T 2bnx_A           25 CLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGIL  103 (386)
T ss_dssp             HHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHH
T ss_pred             HHHHHhHHHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHH
Confidence            445555 334444444 344 46788888888731    1       34567778889998877765555554 678999


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHHhcCCCC--C-chhhh----------hcCCcHHHHHHhhccCCchHHHHHHHHHHHHh
Q 021317           94 LLVQILHSGSVQGRVDAVTALHYLSTCKE--N-SSPIL----------DATAVPPLINLLKDCKKYSKFAEKATALLEIL  160 (314)
Q Consensus        94 ~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~--~-~~~i~----------~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L  160 (314)
                      .++..|.++++.++..++..|..+|..++  + ...+.          +..-...+++.+..+. ..++...++..+-.+
T Consensus       104 ~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~-~~e~~~a~m~lIN~l  182 (386)
T 2bnx_A          104 LLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGT-SIALKVGCLQLINAL  182 (386)
T ss_dssp             HHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTS-CHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCC-hHHHHHHHHHHHHHH
Confidence            99999999999999999999988885543  4 33332          2346667888887543 347777888887777


Q ss_pred             cCChhh-------hhHHHhccCCHHHHHHHhhc-CCHHH
Q 021317          161 SSSEEG-------RIAITNSDGGILTLVETVED-GSLVS  191 (314)
Q Consensus       161 ~~~~~~-------~~~i~~~~g~v~~Lv~ll~~-~~~~~  191 (314)
                      ....+.       |..+. ..| +..++.-|+. .++.+
T Consensus       183 v~~~~dl~~R~~LR~Ef~-~~G-L~~il~~Lr~~~~~~L  219 (386)
T 2bnx_A          183 ITPAEELDFRVHIRSELM-RLG-LHQVLQELREIENEDM  219 (386)
T ss_dssp             HTTCSCHHHHHHHHHHHH-HTT-HHHHHHHHTTCCCHHH
T ss_pred             HCCCCCHHHHHHHHHHHH-HCC-hHHHHHHHhccCChhH
Confidence            666433       45555 354 4445555554 44443

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=90.46  E-value=2  Score=43.98  Aligned_cols=166  Identities=15%  Similarity=0.078  Sum_probs=100.5

Q ss_pred             cHHHHHHHhcc----CCHHHHHHHHHHHHHhcC----CCCCchhhhhcCCcHHHHHHh----hccCCchHHHHHHHHHHH
Q 021317           91 AAPLLVQILHS----GSVQGRVDAVTALHYLST----CKENSSPILDATAVPPLINLL----KDCKKYSKFAEKATALLE  158 (314)
Q Consensus        91 ~l~~Lv~lL~~----~~~~~~~~a~~~L~nLs~----~~~~~~~i~~~g~i~~Lv~lL----~~~~~~~~~~~~a~~~L~  158 (314)
                      .+..+..++.+    .++.++..++-++.+|..    ....+.    ...++.+.+.+    ..++  ..-...++.+|.
T Consensus       392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~----~~~v~~i~~~l~~~~~~~~--~~~~~~~LkaLG  465 (1056)
T 1lsh_A          392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCP----DELLQPLHDLLSQSSDRAK--EEEIVLALKALG  465 (1056)
T ss_dssp             HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCC----GGGTHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCC----HHHHHHHHHHHHHHHhcCC--hHHHHHHHHHhh
Confidence            44555666654    356677777777766652    222221    12345555444    4433  234567888898


Q ss_pred             HhcCChhhhhHHHhccCCHHHHHHHhhc-------CCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhh--hc
Q 021317          159 ILSSSEEGRIAITNSDGGILTLVETVED-------GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLT--VE  229 (314)
Q Consensus       159 ~L~~~~~~~~~i~~~~g~v~~Lv~ll~~-------~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll--~~  229 (314)
                      |+..           ...++.|..++..       ....++..|+.+|..++...+..         +-+.|.++.  +.
T Consensus       466 N~g~-----------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~---------v~~il~~i~~n~~  525 (1056)
T 1lsh_A          466 NAGQ-----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK---------VQEIVLPIFLNVA  525 (1056)
T ss_dssp             HHTC-----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH---------HHHHHHHHHHCTT
T ss_pred             ccCC-----------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH---------HHHHHHHHhcCCC
Confidence            8765           2355666666632       23568889999999998765432         234466666  34


Q ss_pred             CCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Q 021317          230 GTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRS  291 (314)
Q Consensus       230 ~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s  291 (314)
                      .++++|..|...|-..  ++.     ...+..+...+.  .+.+...+....+.|+++++.+
T Consensus       526 e~~EvRiaA~~~Lm~t--~P~-----~~~l~~ia~~l~--~E~~~QV~sfv~S~l~sla~s~  578 (1056)
T 1lsh_A          526 IKSELRIRSCIVFFES--KPS-----VALVSMVAVRLR--REPNLQVASFVYSQMRSLSRSS  578 (1056)
T ss_dssp             SCHHHHHHHHHHHHHT--CCC-----HHHHHHHHHHHT--TCSCHHHHHHHHHHHHHHTTCC
T ss_pred             CChHHHHHHHHHHHHH--CcC-----HHHHHHHHHHHh--hCchHHHHHHHHHHHHHHHhcC
Confidence            6789988888777432  232     334455555554  4446778888888888888644

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=90.38  E-value=3.5  Score=34.21  Aligned_cols=140  Identities=14%  Similarity=0.033  Sum_probs=88.4

Q ss_pred             HHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHH-HhccCCHHHHHHHHHHHHHhcC--CCCCchhhhhcC
Q 021317           55 VELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQ-ILHSGSVQGRVDAVTALHYLST--CKENSSPILDAT  131 (314)
Q Consensus        55 v~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~-lL~~~~~~~~~~a~~~L~nLs~--~~~~~~~i~~~g  131 (314)
                      ..+.+++..++|..|+..|..+ .        .....++.+-. +-.+++-.+++.++.++..++.  +++        .
T Consensus        77 ~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--------~  139 (240)
T 3l9t_A           77 FLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--------K  139 (240)
T ss_dssp             HHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--------T
T ss_pred             HHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--------H
Confidence            3445677788999999988877 2        11234555555 4456788999999999999884  332        1


Q ss_pred             CcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHH
Q 021317          132 AVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYR  211 (314)
Q Consensus       132 ~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~  211 (314)
                      .++.+.....+.+.  .++..|...+.-.+..+..+...   .-.++.|-.+..+.+.=++......|..++..+|+-++
T Consensus       140 ~l~~~~~W~~d~n~--~VRR~Ase~~rpW~~~~~~k~dp---~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~  214 (240)
T 3l9t_A          140 ALPIIDEWLKSSNL--HTRRAATEGLRIWTNRPYFKENP---NEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVK  214 (240)
T ss_dssp             THHHHHHHHHCSSH--HHHHHHHHHTCSGGGSTTTTTCH---HHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHhcCCCH--HHHHHHHHhhHHHhccchhhcCH---HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHH
Confidence            56777888887654  66666655543222211111110   11334444455566788999999999999999986444


Q ss_pred             HHHHH
Q 021317          212 QLILK  216 (314)
Q Consensus       212 ~~i~~  216 (314)
                      ..+.+
T Consensus       215 ~~~~~  219 (240)
T 3l9t_A          215 IELKN  219 (240)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            44443

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=90.10  E-value=5.3  Score=35.38  Aligned_cols=134  Identities=10%  Similarity=0.076  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhh-
Q 021317          107 RVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVE-  185 (314)
Q Consensus       107 ~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~-  185 (314)
                      ...+...|.-|-.+.+..+-+++..++..+....+..+.  ++.......|..++....-...=.  ...+|-++..+. 
T Consensus       260 vtR~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~--~l~RaG~KLLLQVSDaksL~~t~L--~e~LPFi~~~i~~  335 (619)
T 3c2g_A          260 IIRTFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNN--DLIRAGCKLLLQVSDAKALAKTPL--ENILPFLLRLIEI  335 (619)
T ss_dssp             HHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCH--HHHHHHHHHHHHHTTCGGGGTSCC--TTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccccccceeecccceeEEEEeecCCc--HHHHhhhheeeeecchHHHhhccc--cccchHHHHHhcc
Confidence            344555554444555566778899999999999988755  777788888877766544432222  246777777775 


Q ss_pred             cCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhc-------CCHHHHHHHHHHHHHh
Q 021317          186 DGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE-------GTFEAQERARTLLDLL  245 (314)
Q Consensus       186 ~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~-------~~~~~~~~A~~~L~~l  245 (314)
                      ++++++.-...+.|.|...+.. -.++..+..|+++.|-..+..       .+..-+..|+++++|.
T Consensus       336 h~eDdvvYSGTGFLSNVVAHKq-~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~  401 (619)
T 3c2g_A          336 HPDDEVIYSGTGFLSNVVAHKQ-HVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNC  401 (619)
T ss_dssp             CCCHHHHHHHHHHHHHHSTTCH-HHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHH
T ss_pred             CCCcceEEecchHHHHHHhccc-chHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHH
Confidence            5778999999999999999875 567888889999988875432       1344455666666554

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=89.35  E-value=2.3  Score=39.18  Aligned_cols=120  Identities=18%  Similarity=0.177  Sum_probs=83.8

Q ss_pred             ccCCHHHHHHHHHHHHHhcCC-CCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHH
Q 021317          100 HSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGIL  178 (314)
Q Consensus       100 ~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~  178 (314)
                      ..+++..+.-|+..|.....+ ++..     ..++..+++++.+.+.  .++..|..-|..+|.+ ++...      .+.
T Consensus        38 ~kg~~k~K~LaaQ~I~kffk~FP~l~-----~~Ai~a~lDLcEDed~--~IR~qaik~Lp~~ck~-~~i~k------iaD  103 (507)
T 3u0r_A           38 VKGGTKEKRLAAQFIPKFFKHFPELA-----DSAINAQLDLCEDEDV--SIRRQAIKELPQFATG-ENLPR------VAD  103 (507)
T ss_dssp             GGSCHHHHHHHHHHHHHHGGGCGGGH-----HHHHHHHHHHHTCSSH--HHHHHHHHHGGGGCCT-TCHHH------HHH
T ss_pred             cCCCHHHHHHHHHHHHHHHhhChhhH-----HHHHHHHHHHHhcccH--HHHHHHHHhhHHHhhh-hhhhh------HHH
Confidence            456788889999888887743 3322     3467888999988644  7888999999999988 55444      445


Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHH
Q 021317          179 TLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLL  242 (314)
Q Consensus       179 ~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L  242 (314)
                      .|+++|.++++.-....-.+|..|-..++.         +.+..|...+..+++.+|+.+..-|
T Consensus       104 vL~QlLqtdd~~E~~~V~~sL~sllk~Dpk---------~tl~~lf~~i~~~~e~~Rer~lkFi  158 (507)
T 3u0r_A          104 ILTQLLQTDDSAEFNLVNNALLSIFKMDAK---------GTLGGLFSQILQGEDIVRERAIKFL  158 (507)
T ss_dssp             HHHHHTTCCCHHHHHHHHHHHHHHHHHCHH---------HHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHhccchHHHHHHHHHHHHHHhcChH---------HHHHHHHHHHcccchHHHHHHHHHH
Confidence            899999988766555566666666555432         3455666655557788888877644

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=89.06  E-value=13  Score=34.17  Aligned_cols=121  Identities=15%  Similarity=0.092  Sum_probs=79.4

Q ss_pred             ccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHH
Q 021317           18 TYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLV   96 (314)
Q Consensus        18 ~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv   96 (314)
                      ..++++.++-|..-|. .....++-...-     +..++++..+++..+|.+|...|-.++.+ ++-..|     ..-|+
T Consensus        38 ~kg~~k~K~LaaQ~I~kffk~FP~l~~~A-----i~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~ki-----aDvL~  106 (507)
T 3u0r_A           38 VKGGTKEKRLAAQFIPKFFKHFPELADSA-----INAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPRV-----ADILT  106 (507)
T ss_dssp             GGSCHHHHHHHHHHHHHHGGGCGGGHHHH-----HHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHHH-----HHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhhH-----HHHHH
Confidence            3456777777777777 677777755443     45688888888888888888888888877 554444     45778


Q ss_pred             HHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHH
Q 021317           97 QILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLE  158 (314)
Q Consensus        97 ~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~  158 (314)
                      ++|...++.-....-.+|..|...+.       .+.+..+..-+..++  +.+++.++..|.
T Consensus       107 QlLqtdd~~E~~~V~~sL~sllk~Dp-------k~tl~~lf~~i~~~~--e~~Rer~lkFi~  159 (507)
T 3u0r_A          107 QLLQTDDSAEFNLVNNALLSIFKMDA-------KGTLGGLFSQILQGE--DIVRERAIKFLS  159 (507)
T ss_dssp             HHTTCCCHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHHHSC--HHHHHHHHHHHH
T ss_pred             HHHhccchHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHcccc--hHHHHHHHHHHH
Confidence            88888877665555555555543221       234555555555543  366777777765

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=88.72  E-value=1.5  Score=44.85  Aligned_cols=140  Identities=11%  Similarity=0.011  Sum_probs=78.2

Q ss_pred             hHHHHHHHHHHHHhcCChhh--hhHHHhccCCHHHHHHHhhc-----CCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCC
Q 021317          147 SKFAEKATALLEILSSSEEG--RIAITNSDGGILTLVETVED-----GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGA  219 (314)
Q Consensus       147 ~~~~~~a~~~L~~L~~~~~~--~~~i~~~~g~v~~Lv~ll~~-----~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~  219 (314)
                      ...++.++.++..++.+...  -...+  ..+++.|+.++..     ....++..++++++..+..-. . ..... ...
T Consensus       467 W~~~EA~~~a~gaIa~~~~~~~e~~~l--~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~-~-~~~~L-~~v  541 (1023)
T 4hat_C          467 WHNINTLSWAIGSISGTMSEDTEKRFV--VTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLK-A-HWNFL-RTV  541 (1023)
T ss_dssp             HHHHHHHHHHHHHTTTSSCHHHHHHHH--HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHH-H-CHHHH-HHH
T ss_pred             HHHHHHHHHHHHHHHcCCCchhHHHHH--HHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHh-c-cHHHH-HHH
Confidence            47789999999998877432  22333  3478888888863     223344556677766553210 0 00111 123


Q ss_pred             hHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcc------hhhhHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHHH
Q 021317          220 IPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLS------SSVLEKIVYDIAARV-DGADKAAETAKRLLQDMVQRS  291 (314)
Q Consensus       220 v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~------~~~~~~lv~~l~~~~-~~~~~~~~~A~~~L~~l~~~s  291 (314)
                      +..|.+.+.+.++.++..|++++.++|.........      ...++.++..+..-. .-+.+....+-.++..+++..
T Consensus       542 l~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~  620 (1023)
T 4hat_C          542 ILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEE  620 (1023)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence            444555555567899999999999999755432221      113444444333211 223455566666666666543

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=88.16  E-value=13  Score=32.57  Aligned_cols=221  Identities=11%  Similarity=0.056  Sum_probs=146.9

Q ss_pred             HHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC-CChhH----Hh-hcCcHHHHHHHhccCCHHHHHHHHHHHHH
Q 021317           43 VKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA-PNKPA----IA-ASGAAPLLVQILHSGSVQGRVDAVTALHY  116 (314)
Q Consensus        43 ~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~~~~~----i~-~~g~l~~Lv~lL~~~~~~~~~~a~~~L~n  116 (314)
                      ..+...+.+..|+..|..=+-+.+..++.+..++-... +++..    +. ....+..|+..-+  ++++-..+-..|+.
T Consensus        72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl~~G~mLRe  149 (341)
T 1upk_A           72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRE  149 (341)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHhHHHHHHHH
Confidence            34456788888898888878899999999888877643 22222    22 2233333333333  34455566677888


Q ss_pred             hcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHh-cCChhhhhHHHhc--cCCHHHHHHHhhcCCHHHHH
Q 021317          117 LSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEIL-SSSEEGRIAITNS--DGGILTLVETVEDGSLVSTQ  193 (314)
Q Consensus       117 Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L-~~~~~~~~~i~~~--~g~v~~Lv~ll~~~~~~~~~  193 (314)
                      ....+.....+...+.+-.+.+.++.+  ..++..-|..++..| ..+..........  ...+...-.+|.+++--++.
T Consensus       150 cir~e~la~~iL~~~~f~~fF~yv~~~--~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkR  227 (341)
T 1upk_A          150 CIRHEPLAKIILWSEQFYDFFRYVEMS--TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKR  227 (341)
T ss_dssp             HHTSHHHHHHHHHSGGGGHHHHHTTCS--SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHH
T ss_pred             HHHhHHHHHHHhccHHHHHHHHHhcCC--CchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHH
Confidence            778877777788877788888888775  447777777777755 4444443344311  12355677788889988999


Q ss_pred             HHHHHHHHhhccCcH-HHHHHHHH-cCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCch--hhcc--hhhhHHHHHHHh
Q 021317          194 HAVGALLSLCQSCRD-KYRQLILK-EGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE--KRLS--SSVLEKIVYDIA  267 (314)
Q Consensus       194 ~A~~~L~~L~~~~~~-~~~~~i~~-~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~--~~~~--~~~~~~lv~~l~  267 (314)
                      .++..|..|-.+..+ ......+. ..-+..++.++++.+..+|-.|.-+..-+..++..  ++..  ..-.+.|+..+.
T Consensus       228 QSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~  307 (341)
T 1upk_A          228 QSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLS  307 (341)
T ss_dssp             HHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHH
T ss_pred             HHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHH
Confidence            999999998766432 22333333 44588889999999999999999999888766642  2222  223445666655

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=87.74  E-value=3.5  Score=42.03  Aligned_cols=140  Identities=11%  Similarity=0.060  Sum_probs=76.3

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCc-hhhhhcCCcHHHHHHhhcc---CCchHHHHHHHHHHHHhcCChhhhhHHHhccCCH
Q 021317          102 GSVQGRVDAVTALHYLSTCKENS-SPILDATAVPPLINLLKDC---KKYSKFAEKATALLEILSSSEEGRIAITNSDGGI  177 (314)
Q Consensus       102 ~~~~~~~~a~~~L~nLs~~~~~~-~~i~~~g~i~~Lv~lL~~~---~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v  177 (314)
                      .+...++.++.+++.++..-... ..-.-...++.++.+....   .+.+.++..++.++...+..-.......  ...+
T Consensus       465 ~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l--~~vl  542 (1049)
T 3m1i_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL--RTVI  542 (1049)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH--HHHH
T ss_pred             CCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHH--HHHH
Confidence            46788999999999888432111 0000112333344433211   1122232245566665554422223333  2367


Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHH----------cCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 021317          178 LTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK----------EGAIPGLLRLTVEGTFEAQERARTLLDLLRD  247 (314)
Q Consensus       178 ~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~----------~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~  247 (314)
                      +.++..|.+.++.++..|+.++.++|...    +..+..          ...+..+..++..-+.........++..+..
T Consensus       543 ~~ll~~l~~~~~~V~~~A~~al~~l~~~~----~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~  618 (1049)
T 3m1i_C          543 LKLFEFMHETHEGVQDMACDTFIKIVQKC----KYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS  618 (1049)
T ss_dssp             HHHHHHTTSSCHHHHHHHHHHHHHHHHHH----THHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHH----HHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            78888888888999999999999999653    333330          1233333344444445555555556666544

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=85.85  E-value=2.9  Score=34.71  Aligned_cols=135  Identities=14%  Similarity=0.098  Sum_probs=89.5

Q ss_pred             HHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcC--ChhhhhHHH
Q 021317           94 LLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSS--SEEGRIAIT  171 (314)
Q Consensus        94 ~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~--~~~~~~~i~  171 (314)
                      ..-.+..++..++|..|+.+|..+ . +       ....++.+...+..+. ...+++.+..++..++.  +++      
T Consensus        75 la~~L~~~~~deVR~~Av~lLg~~-~-~-------~~~~L~~ir~~va~D~-~WrVre~lA~a~~~~~~~~~pe------  138 (240)
T 3l9t_A           75 LAFLAYQSDVYQVRMYAVFLFGYL-S-K-------DKEILIFMRDEVSKDN-NWRVQEVLAKAFDEFCKKIEYK------  138 (240)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHT-T-T-------SHHHHHHHHHTGGGCS-CHHHHHHHHHHHHHHHHHHCTT------
T ss_pred             HHHHHHhCcchHHHHHHHHHHHhc-c-C-------cHHHHHHHHHHhCCCC-CccHHHHHHHHHHHHHHhcCHH------
Confidence            334445667789999999988877 2 1       1224444444344433 44888888888877664  221      


Q ss_pred             hccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCch
Q 021317          172 NSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE  251 (314)
Q Consensus       172 ~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~  251 (314)
                         ..++.+.....+++..+|..|...+.-.|....  .+..  -.-.++.|-.+..+.+.-+|+.-.+.|+.+++..++
T Consensus       139 ---~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~--~k~d--p~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd  211 (240)
T 3l9t_A          139 ---KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPY--FKEN--PNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPD  211 (240)
T ss_dssp             ---TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTT--TTTC--HHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred             ---HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccch--hhcC--HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHH
Confidence               256788889999999999999988765443210  0000  011466666677788899999989999999998764

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=84.12  E-value=2.4  Score=32.17  Aligned_cols=72  Identities=11%  Similarity=0.139  Sum_probs=57.0

Q ss_pred             CHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 021317          176 GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRD  247 (314)
Q Consensus       176 ~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~  247 (314)
                      ++..+.+-|.++++.++..|+..|-.+..++.......+.+...+..|+.++...++.+++....++..-+.
T Consensus        43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~  114 (140)
T 3ldz_A           43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD  114 (140)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence            445677778888899999999999888887765666666666678888888877889999999988877653

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=82.46  E-value=15  Score=37.46  Aligned_cols=118  Identities=11%  Similarity=-0.023  Sum_probs=69.8

Q ss_pred             CHHHHHHHHHHHHHhcc----CCCChhHHhhcCcHHHHH----HHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCc
Q 021317           62 NGTLRELAAAAILTLSA----AAPNKPAIAASGAAPLLV----QILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAV  133 (314)
Q Consensus        62 ~~~~~~~a~~~L~~La~----~~~~~~~i~~~g~l~~Lv----~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i  133 (314)
                      ++.++..+.-++++|..    +...+    ....++.+.    +.+...+.+-+..++.+|+|+-..          ..+
T Consensus       408 ~~~l~~ta~La~gslV~k~c~~~~~c----~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p----------~~l  473 (1056)
T 1lsh_A          408 RPILRKTAVLGYGSLVFRYCANTVSC----PDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP----------NSI  473 (1056)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCSSC----CGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG----------GGH
T ss_pred             CHHHHHHHHHHHHHHHHHHhccCCCC----CHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh----------hHH
Confidence            45566666666666654    21111    112244444    445667888889999999998764          256


Q ss_pred             HHHHHHhhc-----cCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhh--cCCHHHHHHHHHHHHH
Q 021317          134 PPLINLLKD-----CKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVE--DGSLVSTQHAVGALLS  201 (314)
Q Consensus       134 ~~Lv~lL~~-----~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~--~~~~~~~~~A~~~L~~  201 (314)
                      +.|..++..     .+....++..|+.+|..++...   ...     +-+.++.+..  ..++++|-.|+..|..
T Consensus       474 ~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~---p~~-----v~~il~~i~~n~~e~~EvRiaA~~~Lm~  540 (1056)
T 1lsh_A          474 KKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD---PRK-----VQEIVLPIFLNVAIKSELRIRSCIVFFE  540 (1056)
T ss_dssp             HHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC---HHH-----HHHHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc---hHH-----HHHHHHHHhcCCCCChHHHHHHHHHHHH
Confidence            777777643     1222356667777777766321   111     2235667774  3568888888877754

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=81.71  E-value=3.4  Score=32.17  Aligned_cols=72  Identities=8%  Similarity=0.093  Sum_probs=57.2

Q ss_pred             CHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhc-CCHHHHHHHHHHHHHhhc
Q 021317          176 GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE-GTFEAQERARTLLDLLRD  247 (314)
Q Consensus       176 ~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~-~~~~~~~~A~~~L~~l~~  247 (314)
                      ++..|.+-|.++++.++..|+..|-.+..++.......+.+...+..|++++.. .++.+++.+..++..-+.
T Consensus        53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~  125 (163)
T 1x5b_A           53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE  125 (163)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence            445677778888999999999999998888766677777777788888887765 568999999888877654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	314
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-15
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	9e-15
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	6e-10
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	5e-09
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-07
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	8e-05
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	8e-12
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-11
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	7e-10
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-08
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-05
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	5e-09
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	1e-08
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	1e-04
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	5e-04
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	0.004
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	1e-06
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	2e-04
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	0.003
d2j8wa1	128	a.24.3.2 (A:1-128) Cytochrome c' {Rhodocyclus gela	2e-04
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	9e-04
d1bbha_	131	a.24.3.2 (A:) Cytochrome c' {Chromatium vinosum [T	9e-04
d1cpqa_	129	a.24.3.2 (A:) Cytochrome c' {Rhodobacter capsulatu	0.001
d1e85a_	125	a.24.3.2 (A:) Cytochrome c' {Alcaligenes sp. [TaxI	0.003

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.5 bits (181), Expect = 2e-15
 Identities = 29/126 (23%), Positives = 46/126 (36%), Gaps = 2/126 (1%)

Query: 36  LSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLL 95
           L +     +  T+        +   +   + E    A+  L+    N+  I      PL 
Sbjct: 406 LVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLF 465

Query: 96  VQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATA 155
           VQ+L+S     +  A   L  L+  KE +  I    A  PL  LL    +    A  A A
Sbjct: 466 VQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHS--RNEGVATYAAA 523

Query: 156 LLEILS 161
           +L  +S
Sbjct: 524 VLFRMS 529

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.2 bits (175), Expect = 9e-15
 Identities = 38/209 (18%), Positives = 71/209 (33%), Gaps = 4/209 (1%)

Query: 47  TAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAA-PLLVQIL-HSGSV 104
              AIP L +LL  ++  +   AA  +  LS    ++ AI  S      +V+ + ++  V
Sbjct: 15  ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDV 74

Query: 105 QGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE 164
           +        LH LS  +E    I  +  +P L+ +L            A   L  L   +
Sbjct: 75  ETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVL--FYAITTLHNLLLHQ 132

Query: 165 EGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLL 224
           EG        GG+  +V  +   ++         L  L    ++    ++   G    + 
Sbjct: 133 EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVN 192

Query: 225 RLTVEGTFEAQERARTLLDLLRDTPQEKR 253
            +      +       +L +L      K 
Sbjct: 193 IMRTYTYEKLLWTTSRVLKVLSVCSSNKP 221

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (137), Expect = 6e-10
 Identities = 30/162 (18%), Positives = 48/162 (29%), Gaps = 22/162 (13%)

Query: 41  NKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILH 100
           N   +   GAIP LV+LL   +   +   +            +      G          
Sbjct: 389 NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCT-------- 440

Query: 101 SGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEIL 160
                       ALH L+    N   I     +P  + LL            A  +L  L
Sbjct: 441 -----------GALHILARDVHNRIVIRGLNTIPLFVQLLYS--PIENIQRVAAGVLCEL 487

Query: 161 SSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSL 202
           +  +E   AI  ++G    L E +   +     +A   L  +
Sbjct: 488 AQDKEAAEAIE-AEGATAPLTELLHSRNEGVATYAAAVLFRM 528

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (130), Expect = 5e-09
 Identities = 26/122 (21%), Positives = 42/122 (34%), Gaps = 4/122 (3%)

Query: 26  RLNLMGPLWQLSKTR--NKVKIATAGAIPPLVELLKFQNGT-LRELAAAAILTLSAAAPN 82
                  + QLSK        + +   +  +V  ++  N        A  +  LS     
Sbjct: 34  VNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG 93

Query: 83  KPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLK 141
             AI  SG  P LV++L S        A+T LH L    +     +  A  +  ++ LL 
Sbjct: 94  LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN 153

Query: 142 DC 143
             
Sbjct: 154 KT 155

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (116), Expect = 2e-07
 Identities = 33/156 (21%), Positives = 51/156 (32%), Gaps = 23/156 (14%)

Query: 110 AVTALHYLSTCKENSSPILDATAVPPLINLLK--------------------DCKKYSKF 149
            V  +  L+ C  N +P+ +  A+P L+ LL                     +  +  + 
Sbjct: 376 TVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEI 435

Query: 150 AEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDK 209
            E  T  L IL+     RI I      I   V+ +        + A G L  L Q    +
Sbjct: 436 VEGCTGALHILARDVHNRIVIRGL-NTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KE 492

Query: 210 YRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLL 245
             + I  EGA   L  L           A  +L  +
Sbjct: 493 AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 8e-05
 Identities = 33/150 (22%), Positives = 59/150 (39%), Gaps = 2/150 (1%)

Query: 26  RLNLMGPLWQLSKTR-NKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA-APNK 83
                G L  LS  R   + I  +G IP LV++L     ++   A   +  L       K
Sbjct: 77  ARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136

Query: 84  PAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDC 143
            A+  +G    +V +L+  +V+        L  L+   + S  I+ A+  P  +  +   
Sbjct: 137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 196

Query: 144 KKYSKFAEKATALLEILSSSEEGRIAITNS 173
             Y K     + +L++LS     + AI  +
Sbjct: 197 YTYEKLLWTTSRVLKVLSVCSSNKPAIVEA 226

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (152), Expect = 8e-12
 Identities = 35/212 (16%), Positives = 68/212 (32%), Gaps = 18/212 (8%)

Query: 51  IPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQILHSGSVQGRVD 109
           IP  V+ L  Q+   + + A  I          K  +   G    LV +L S +   +  
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63

Query: 110 AVTALHYLST-CKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRI 168
           A  AL  L      N         +   ++LL+         ++ T LL  LSS++E + 
Sbjct: 64  AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAE-IQKQLTGLLWNLSSTDELKE 122

Query: 169 AITNSDGGILTLVETVEDGSLVST--------------QHAVGALLSLCQSCRDKYRQLI 214
            +      +L     +                       +A G L +L  +     + + 
Sbjct: 123 ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSAD-AGRQTMR 181

Query: 215 LKEGAIPGLLRLTVEGTFEAQERARTLLDLLR 246
              G I  L+         ++   +++ + + 
Sbjct: 182 NYSGLIDSLMAYVQNCVAASRCDDKSVENCMC 213

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (149), Expect = 2e-11
 Identities = 28/163 (17%), Positives = 56/163 (34%), Gaps = 9/163 (5%)

Query: 15  FMETYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAIL 74
              T         NL      +S   +++       +P +  LL+  N  +    A+ + 
Sbjct: 297 KDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLS 356

Query: 75  TLSAAAPNKPAIAASGAAPLLVQILHSG------SVQGRVDAVTALHYLSTC-KENSSPI 127
            +S        +  +   P + ++L S       S      A   +  L     + +   
Sbjct: 357 NMSRHPLLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQY 415

Query: 128 LDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAI 170
             ++ +  +INL +      K AE A  LL  + SS+E +  +
Sbjct: 416 FSSSMLNNIINLCRSSAS-PKAAEAARLLLSDMWSSKELQGVL 457

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (136), Expect = 7e-10
 Identities = 38/201 (18%), Positives = 67/201 (33%), Gaps = 15/201 (7%)

Query: 40  RNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQI 98
             K ++   G I  LV+LL+  N  +++ AA A+  L   +  NK            V +
Sbjct: 35  SAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSL 94

Query: 99  -LHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKY----------- 146
              +G+ + +      L  LS+  E    ++          ++     +           
Sbjct: 95  LRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREV 154

Query: 147 --SKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQ 204
              +    AT  L  LSS++ GR  + N  G I +L+  V++    S          +C 
Sbjct: 155 VDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCV 214

Query: 205 SCRDKYRQLILKEGAIPGLLR 225
                YR           L  
Sbjct: 215 LHNLSYRLDAEVPTRYRQLEY 235

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (124), Expect = 2e-08
 Identities = 20/177 (11%), Positives = 52/177 (29%), Gaps = 15/177 (8%)

Query: 41  NKVKIATAGAIPPLVELL-------KFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAP 93
               +  + AI   + L+         +          A   L ++  ++         P
Sbjct: 275 GSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLP 334

Query: 94  LLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEK- 152
            + ++L SG+        + L  +S        + +    P +  LL      +  +E  
Sbjct: 335 QIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQ-VFPEVTRLLTSHTGNTSNSEDI 393

Query: 153 ----ATALLEILSSSEEGRIAITNSDGGILTLVETVED-GSLVSTQHAVGALLSLCQ 204
                  +  +++S  +      +S   +  ++       S  + + A   L  +  
Sbjct: 394 LSSACYTVRNLMASQPQLAKQYFSS-SMLNNIINLCRSSASPKAAEAARLLLSDMWS 449

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 1e-05
 Identities = 24/122 (19%), Positives = 42/122 (34%), Gaps = 4/122 (3%)

Query: 133 VPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVST 192
           +P  +  L    +  +    A  +       E  +  +    GGI  LV+ +   +    
Sbjct: 4   IPKAVQYLSSQDEKYQA-IGAYYIQHTCFQDESAKQQVYQL-GGICKLVDLLRSPNQNVQ 61

Query: 193 QHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTF-EAQERARTLLDLLRDTPQE 251
           Q A GAL +L        +    ++  I   + L       E Q++   LL  L  T + 
Sbjct: 62  QAAAGALRNLVFRS-TTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL 120

Query: 252 KR 253
           K 
Sbjct: 121 KE 122

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.8 bits (130), Expect = 5e-09
 Identities = 26/184 (14%), Positives = 51/184 (27%), Gaps = 6/184 (3%)

Query: 47  TAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKP--AIAASGAAPLLVQIL-HSGS 103
              ++  +V+ +   N   +  A  A   L +     P   I  +G  P  V  L  +  
Sbjct: 11  VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC 70

Query: 104 VQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS 163
              + ++  AL  +++     +  +      P    L          +   AL  I    
Sbjct: 71  SPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG 130

Query: 164 EEGRIAITNSDG---GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAI 220
              R  +         +  L               +   LS     ++    L   E  +
Sbjct: 131 SAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL 190

Query: 221 PGLL 224
           P L+
Sbjct: 191 PTLV 194

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.3 bits (126), Expect = 1e-08
 Identities = 34/187 (18%), Positives = 65/187 (34%), Gaps = 8/187 (4%)

Query: 36  LSKTRNK--VKIATAGAIPPLVELLK-FQNGTLRELAAAAILTLSAAAP-NKPAIAASGA 91
           LS+ +      I  AG IP  V  L       ++  +A A+  +++       A+   GA
Sbjct: 41  LSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGA 100

Query: 92  APLLVQILHSGSVQGRVDAVTALHYLSTCKENSSP-ILDATAVPPLINLLKDCK---KYS 147
            P  + +L S        AV AL  ++         ++   A+ PL+ LL          
Sbjct: 101 IPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLAC 160

Query: 148 KFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCR 207
            +    T  L  L  ++     +   +  + TLV  +          +  A+  L     
Sbjct: 161 GYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN 220

Query: 208 DKYRQLI 214
           ++   ++
Sbjct: 221 ERIEMVV 227

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.9 bits (94), Expect = 1e-04
 Identities = 20/121 (16%), Positives = 40/121 (33%), Gaps = 3/121 (2%)

Query: 132 AVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVS 191
           +V  ++  +          +   A  ++LS  ++  I      G I   V  +       
Sbjct: 14  SVEDIVKGINS-NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSP 72

Query: 192 TQ-HAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQ 250
            Q  +  AL ++  S   +  + ++  GAIP  + L         E+A   L  +     
Sbjct: 73  IQFESAWALTNIA-SGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGS 131

Query: 251 E 251
            
Sbjct: 132 A 132

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.0 bits (89), Expect = 5e-04
 Identities = 21/167 (12%), Positives = 57/167 (34%), Gaps = 5/167 (2%)

Query: 82  NKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLK 141
               +  +GA  +   +L +     + +A   +  ++  +++    +    + P +  + 
Sbjct: 264 QTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVL 323

Query: 142 DCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLS 201
               +    E A A+    S     +I      G I  L+  +        Q  + A+ +
Sbjct: 324 SKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISN 383

Query: 202 LCQSC-----RDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLD 243
           + Q+       +K   +I + G +  +  L         + +  L++
Sbjct: 384 IFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 430

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.3 bits (82), Expect = 0.004
 Identities = 13/76 (17%), Positives = 23/76 (30%), Gaps = 7/76 (9%)

Query: 33  LWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKP-------A 85
                     V +   G I PL+ LL  ++  + ++   AI  +  AA            
Sbjct: 341 YTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIM 400

Query: 86  IAASGAAPLLVQILHS 101
           I   G    +  +   
Sbjct: 401 IEECGGLDKIEALQRH 416

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 1e-06
 Identities = 44/210 (20%), Positives = 69/210 (32%), Gaps = 5/210 (2%)

Query: 41  NKVKIATAGAIPPLVE-LLKFQNGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQI 98
           N         +  LV   L+     LR  AA  I T S      +  +   GA   L+++
Sbjct: 50  NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 109

Query: 99  LHS-GSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALL 157
           L        RV A+ A+  L   +E             ++      ++  K   K+  LL
Sbjct: 110 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRA-MQQQVQKLKVKSAFLL 168

Query: 158 EILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKE 217
           + L            S G +  LV  V        +H +GAL SL        R+    E
Sbjct: 169 QNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPE 228

Query: 218 GAIPGLLRLTVEGTFEAQERARTLLDLLRD 247
             +  LLR   +   +  E  +  L+    
Sbjct: 229 LGLEELLRHRCQLL-QQHEEYQEELEFCEK 257

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 26/171 (15%), Positives = 56/171 (32%), Gaps = 7/171 (4%)

Query: 51  IPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDA 110
           +  +++LL+ +NG ++     A+  L                  L   + S   Q R  +
Sbjct: 47  VKMILKLLEDKNGEVQN---LAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDIS 103

Query: 111 VTALHYLSTC--KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSS--SEEG 166
              L  +       +S   L A     +   L       +        L+I++   S +G
Sbjct: 104 SIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQG 163

Query: 167 RIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKE 217
            + +      +  L+  +    L   +  + AL  L  SC +     +++ 
Sbjct: 164 GLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEH 214

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 0.003
 Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 7/92 (7%)

Query: 51   IPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDA 110
               L++  +      R + A  +  L+   P           P L   L SGS   R   
Sbjct: 930  WALLLKHCECAEEGTRNVVAECLGKLTLIDPET-------LLPRLKGYLISGSSYARSSV 982

Query: 111  VTALHYLSTCKENSSPILDATAVPPLINLLKD 142
            VTA+ +  +        L    +   +  L+D
Sbjct: 983  VTAVKFTISDHPQPIDPLLKNCIGDFLKTLED 1014

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.5 bits (88), Expect = 9e-04
 Identities = 30/141 (21%), Positives = 54/141 (38%), Gaps = 8/141 (5%)

Query: 48  AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQILHSGSVQG 106
           AG +P L  LL      +++ A   I  ++A       A+  +   P LV++L     + 
Sbjct: 329 AGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKT 388

Query: 107 RVDAVTALHYLSTCKENSSPIL----DATAVPPLINLLKDCKKYSKFAEKA-TALLEILS 161
           + +A  A+   S+       I+        + PL +LL+     ++  E    AL  IL 
Sbjct: 389 KKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEI--ADNRIIEVTLDALENILK 446

Query: 162 SSEEGRIAITNSDGGILTLVE 182
             E  + A   +       +E
Sbjct: 447 MGEADKEARGLNINENADFIE 467

>d1bbha_ a.24.3.2 (A:) Cytochrome c' {Chromatium vinosum [TaxId: 1049]} Length = 131

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Cytochromes
family: Cytochrome c'-like
domain: Cytochrome c'
species: Chromatium vinosum [TaxId: 1049]

 Score = 36.5 bits (84), Expect = 9e-04
 Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 8/112 (7%)

Query: 101 SGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEIL 160
             +++G  +A           E ++ ++ A A   +  L       +    K     E  
Sbjct: 27  KANLEGEYNAAQV--------EAAANVIAAIANSGMGALYGPGTDKNVGDVKTRVKPEFF 78

Query: 161 SSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQ 212
            + E+         G   TL E    G   + + A G + + C+SC +KYR 
Sbjct: 79  QNMEDVGKIAREFVGAANTLAEVAATGEAEAVKTAFGDVGAACKSCHEKYRA 130

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	314
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.94
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.92
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.91
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.9
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.85
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.85
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.83
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.88
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.87
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.83
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.74
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.62
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.61
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.59
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.36
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.33
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.28
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.22
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.22
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.2
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.15
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.13
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.93
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	97.91
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.86
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	97.82
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	97.8
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	97.68
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.14
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	97.09
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	96.84
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	95.49
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	95.06
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	93.54
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	90.44
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	90.38
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	87.9
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	87.45

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.9e-26  Score=215.32  Aligned_cols=270  Identities=17%  Similarity=0.140  Sum_probs=231.6

Q ss_pred             eeccccCCHHHHHHHHHHhHhhccCchhHHHHHh-cCCcHHHHHHhcC-CCHHHHHHHHHHHHHhccCCCChhHHhhcCc
Q 021317           14 VFMETYFEGYARRLNLMGPLWQLSKTRNKVKIAT-AGAIPPLVELLKF-QNGTLRELAAAAILTLSAAAPNKPAIAASGA   91 (314)
Q Consensus        14 v~~l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~-~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~   91 (314)
                      +.+|++++..++..|+.++.....++..+..+.. .|+++.|+.+|.+ +++++++.|+.+|.+|+.+++++..+.+.|+
T Consensus        23 ~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~  102 (529)
T d1jdha_          23 TKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGG  102 (529)
T ss_dssp             HHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHCCC
Confidence            6788999999999999999955566777777665 5789999999975 5789999999999999999999999999999


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHhcCCC-CCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCCh-hhhhH
Q 021317           92 APLLVQILHSGSVQGRVDAVTALHYLSTCK-ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE-EGRIA  169 (314)
Q Consensus        92 l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~-~~~~~  169 (314)
                      +|.|+.+|+++++.++..|+++|.||+.+. ..+..+.+.|++++|+.+|++++.  .++..++.+|.+++..+ +.+..
T Consensus       103 i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~--~~~~~a~~~L~~l~~~~~~~~~~  180 (529)
T d1jdha_         103 IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV--KFLAITTDCLQILAYGNQESKLI  180 (529)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCH--HHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccCh--HHHHHHHHHHHHHhhhhhHHHHH
Confidence            999999999999999999999999999654 456667789999999999988654  78889999999999764 45555


Q ss_pred             HHhccCCHHHHHHHhhcC-CHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 021317          170 ITNSDGGILTLVETVEDG-SLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDT  248 (314)
Q Consensus       170 i~~~~g~v~~Lv~ll~~~-~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~  248 (314)
                      +. ..|+++.|+.++.+. ...+++.++.++.+++...  +++..+.+.|+++.|+.++.++++.++..+++++.+++..
T Consensus       181 ~~-~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~--~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~  257 (529)
T d1jdha_         181 IL-ASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS--SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA  257 (529)
T ss_dssp             HH-HTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTST--THHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTT
T ss_pred             HH-hcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccc--cccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhcccc
Confidence            55 799999999999764 4788999999999999765  5689999999999999999999999999999999999877


Q ss_pred             CchhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Q 021317          249 PQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRS  291 (314)
Q Consensus       249 ~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s  291 (314)
                      ........|+++.++..+.   +++...++.|..+|.++...+
T Consensus       258 ~~~~~~~~~~i~~Lv~ll~---~~~~~~~~~a~~~L~~l~~~~  297 (529)
T d1jdha_         258 ATKQEGMEGLLGTLVQLLG---SDDINVVTCAAGILSNLTCNN  297 (529)
T ss_dssp             CTTCSCCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHHTTTC
T ss_pred             ccchhhhhhcchhhhhhcc---cccHHHHHHHHHHHHhhccch
Confidence            7655555788888876664   455788999999999998543

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=1.1e-24  Score=199.33  Aligned_cols=282  Identities=16%  Similarity=0.143  Sum_probs=228.7

Q ss_pred             eeccccCCHHHHHHHHHHhH-hhccCch-hHHHHHhcCCcHHHHHHhcC-CCHHHHHHHHHHHHHhccCC-CChhHHhhc
Q 021317           14 VFMETYFEGYARRLNLMGPL-WQLSKTR-NKVKIATAGAIPPLVELLKF-QNGTLRELAAAAILTLSAAA-PNKPAIAAS   89 (314)
Q Consensus        14 v~~l~~~~~~~~~~a~~al~-l~~~~~~-~~~~l~~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~La~~~-~~~~~i~~~   89 (314)
                      +.++.++|++.|..|+.++. +++.... ....+.+.|++|.|+++|++ ++++++..|+++|.+++..+ +.+..+.+.
T Consensus        19 v~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~   98 (434)
T d1q1sc_          19 VKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDG   98 (434)
T ss_dssp             HHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhc
Confidence            67899999999999999998 5543322 34678899999999999965 46889999999999998764 678888999


Q ss_pred             CcHHHHHHHhccCCHHHHHHHHHHHHHhcCC-CCCchhhhhcCCcHHHHHHhhccCC-----------------------
Q 021317           90 GAAPLLVQILHSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKK-----------------------  145 (314)
Q Consensus        90 g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~lL~~~~~-----------------------  145 (314)
                      |++|.++++|.++++++++.|+++|.|++.+ ++.+..+.+.|+++.++.++.....                       
T Consensus        99 ~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~  178 (434)
T d1q1sc_          99 GAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKN  178 (434)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCT
T ss_pred             cchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhccc
Confidence            9999999999999999999999999999964 3455666667777777666533211                       


Q ss_pred             ----------------------chHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 021317          146 ----------------------YSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLC  203 (314)
Q Consensus       146 ----------------------~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~  203 (314)
                                            +.+++..+++++.+++.+++.+.......|+++.++.++++++..++..++.+|.+++
T Consensus       179 ~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~  258 (434)
T d1q1sc_         179 PAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIV  258 (434)
T ss_dssp             TCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHT
T ss_pred             ccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHH
Confidence                                  1244567788899998876555444447899999999999999999999999999999


Q ss_pred             ccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCch---hhcchhhhHHHHHHHhhcCCCHHHHHHHH
Q 021317          204 QSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE---KRLSSSVLEKIVYDIAARVDGADKAAETA  280 (314)
Q Consensus       204 ~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~---~~~~~~~~~~lv~~l~~~~~~~~~~~~~A  280 (314)
                      ..++ +.+..+.+.|+++.|+.++++.++.+++.|+++|.+++.+...   .....|+++.++..+.   +++.+.+..|
T Consensus       259 ~~~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~---~~~~~v~~~a  334 (434)
T d1q1sc_         259 TGTD-EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS---KADFKTQKEA  334 (434)
T ss_dssp             TSCH-HHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHH---SSCHHHHHHH
T ss_pred             hhhh-HHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHh---ccChHHHHHH
Confidence            8764 6788889999999999999999999999999999999987643   2445788888877775   4458899999


Q ss_pred             HHHHHHHHHHHHHHhHHHH
Q 021317          281 KRLLQDMVQRSMELSMTRI  299 (314)
Q Consensus       281 ~~~L~~l~~~s~~~~~~~~  299 (314)
                      ..+|.++.....+.....+
T Consensus       335 ~~~l~nl~~~~~~~~~~~l  353 (434)
T d1q1sc_         335 AWAITNYTSGGTVEQIVYL  353 (434)
T ss_dssp             HHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHH
Confidence            9999999976544444443

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.1e-25  Score=212.27  Aligned_cols=269  Identities=19%  Similarity=0.167  Sum_probs=230.2

Q ss_pred             eccc-cCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCC-ChhHHhhcCcH
Q 021317           15 FMET-YFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAASGAA   92 (314)
Q Consensus        15 ~~l~-~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~-~~~~i~~~g~l   92 (314)
                      .+|. +++++.++.++.+|...+.+++++..+++.|++|.|+.+|.+++++++..|+++|+||+.+.+ .+..+.+.|++
T Consensus        66 ~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i  145 (529)
T d1jdha_          66 RTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGL  145 (529)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHH
T ss_pred             HHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCc
Confidence            3454 467899999999999667889999999999999999999999999999999999999998765 56667799999


Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHHhcCC-CCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHH
Q 021317           93 PLLVQILHSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAIT  171 (314)
Q Consensus        93 ~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~  171 (314)
                      |+|+.+|+++++.++..++.+|.+++.. ++.+..+.+.|++++|+.++..++. ..+...+..++.+++.+++++..++
T Consensus       146 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~-~~~~~~~~~~l~~ls~~~~~~~~~~  224 (529)
T d1jdha_         146 QKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY-EKLLWTTSRVLKVLSVCSSNKPAIV  224 (529)
T ss_dssp             HHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCC-HHHHHHHHHHHHHHTTSTTHHHHHH
T ss_pred             hHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhh-HHHHHHHHHHHhhhhccccccchhh
Confidence            9999999999999999999999999954 4566777889999999999988653 4778899999999999999999998


Q ss_pred             hccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCch
Q 021317          172 NSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE  251 (314)
Q Consensus       172 ~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~  251 (314)
                       +.|+++.|+.++.+++..++..++++|.+++....    ......|+++.|+++++++++.+++.|+++|.+++.++..
T Consensus       225 -~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~----~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~  299 (529)
T d1jdha_         225 -EAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT----KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK  299 (529)
T ss_dssp             -HTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCT----TCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHH
T ss_pred             -hhhhhhhHHHHhcccchhhhhhhhhHHHhcccccc----chhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhH
Confidence             79999999999999999999999999999986542    2223357899999999999999999999999999876643


Q ss_pred             ---hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Q 021317          252 ---KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR  290 (314)
Q Consensus       252 ---~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~  290 (314)
                         ...+.++++.++..+....+ .+..++.|..+|+++...
T Consensus       300 ~~~~i~~~~~i~~Li~~l~~~~~-~~~~~~~a~~aL~~l~~~  340 (529)
T d1jdha_         300 NKMMVCQVGGIEALVRTVLRAGD-REDITEPAICALRHLTSR  340 (529)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHhhhHHHHHHHHHhhhc-chhHHHHHHHHhhcccch
Confidence               24467888888877763333 477889999999999744

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=3.6e-23  Score=193.72  Aligned_cols=272  Identities=14%  Similarity=0.095  Sum_probs=232.4

Q ss_pred             eecccc-CCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC-CChhHHhhcC
Q 021317           14 VFMETY-FEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA-PNKPAIAASG   90 (314)
Q Consensus        14 v~~l~~-~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~~~~~i~~~g   90 (314)
                      +.++++ .++.+|..|+++|. ++..++.....+.+.|+++.++.+|.+++.+++..++++|+||+.+. +++..+.+.|
T Consensus       125 v~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~  204 (503)
T d1wa5b_         125 VEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCN  204 (503)
T ss_dssp             HHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhc
Confidence            445654 56789999999999 66677777788889999999999999999999999999999999864 7788899999


Q ss_pred             cHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCch-hhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhh-hh
Q 021317           91 AAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSS-PILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEG-RI  168 (314)
Q Consensus        91 ~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~-~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~-~~  168 (314)
                      ++++|+.++.+.++.++..++++|.|++....... .....++++.++.++.+.+.  .+...++++|.+++...+. ..
T Consensus       205 ~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~--~~~~~~~~~l~~l~~~~~~~~~  282 (503)
T d1wa5b_         205 AMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDT--ETLVDACWAISYLSDGPQEAIQ  282 (503)
T ss_dssp             CHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCH--HHHHHHHHHHHHHHSSCHHHHH
T ss_pred             ccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccccH--HHHHHHHHHHHhhccCCchhhh
Confidence            99999999999999999999999999997654443 34457899999999988654  7788899999999977554 55


Q ss_pred             HHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 021317          169 AITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDT  248 (314)
Q Consensus       169 ~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~  248 (314)
                      .+. +.|+++.++.++.+++..++..|+.+|.+++.... .....+.+.|+++.|..++.+.++.+++.++++|.|++.+
T Consensus       283 ~~~-~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~-~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~  360 (503)
T d1wa5b_         283 AVI-DVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND-LQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG  360 (503)
T ss_dssp             HHH-HTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred             hhh-hhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHH-HHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhc
Confidence            666 79999999999999999999999999999998764 6677788899999999999999999999999999999877


Q ss_pred             Cch---hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHH
Q 021317          249 PQE---KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSM  292 (314)
Q Consensus       249 ~~~---~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~  292 (314)
                      ++.   .....++++.++..+.   .++.+.+..|..+|.++.....
T Consensus       361 ~~~~~~~i~~~~~l~~li~~l~---~~~~~v~~~a~~~l~nl~~~~~  404 (503)
T d1wa5b_         361 NTEQIQAVIDANLIPPLVKLLE---VAEYKTKKEACWAISNASSGGL  404 (503)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHH---HSCHHHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHccccchhHHhcc---cCChhHHHHHHHHHHHHHhccc
Confidence            643   3456788888887776   4457899999999999997543

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=5e-23  Score=192.72  Aligned_cols=273  Identities=16%  Similarity=0.143  Sum_probs=228.1

Q ss_pred             eccccCCHHHHHHHHHHhH-hh-ccCchhHHHHHhcCCcHHHHHHhcCC-CHHHHHHHHHHHHHhccCC-CChhHHhhcC
Q 021317           15 FMETYFEGYARRLNLMGPL-WQ-LSKTRNKVKIATAGAIPPLVELLKFQ-NGTLRELAAAAILTLSAAA-PNKPAIAASG   90 (314)
Q Consensus        15 ~~l~~~~~~~~~~a~~al~-l~-~~~~~~~~~l~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~La~~~-~~~~~i~~~g   90 (314)
                      ..+.+++.+.|..++..+. ++ ..+......+.+.|++|.|+.+|.++ ++.++..|+++|.|++..+ .....+.+.|
T Consensus        83 ~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g  162 (503)
T d1wa5b_          83 QQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDAD  162 (503)
T ss_dssp             HHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCC
Confidence            4467888999999999998 44 34555567888999999999999854 7889999999999999865 4566677999


Q ss_pred             cHHHHHHHhccCCHHHHHHHHHHHHHhcC-CCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhH
Q 021317           91 AAPLLVQILHSGSVQGRVDAVTALHYLST-CKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIA  169 (314)
Q Consensus        91 ~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~  169 (314)
                      +++.++.+|.+++.+++..++++|.||+. +++.+..+.+.|++++|+.++.+...  .+...++++++|++.+......
T Consensus       163 ~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~--~~~~~~~~~l~nl~~~~~~~~~  240 (503)
T d1wa5b_         163 AVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKP--SLIRTATWTLSNLCRGKKPQPD  240 (503)
T ss_dssp             CHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCH--HHHHHHHHHHHHHHCCSSSCCC
T ss_pred             ChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCH--HHHHHHHHHHHHHhcCCccchH
Confidence            99999999999999999999999999995 45788889999999999999988654  7788999999999987654433


Q ss_pred             HHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCC
Q 021317          170 ITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP  249 (314)
Q Consensus       170 i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~  249 (314)
                      .....|+++.++.++.+.++.++..++++|.+++...+ +....+.+.|+++.|+.++.++++.++..|+.++.+++.+.
T Consensus       241 ~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~  319 (503)
T d1wa5b_         241 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQ-EAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGN  319 (503)
T ss_dssp             HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCH-HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCc-hhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHH
Confidence            32257899999999999999999999999999998764 66788899999999999999999999999999999999766


Q ss_pred             ch---hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 021317          250 QE---KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSME  293 (314)
Q Consensus       250 ~~---~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~~  293 (314)
                      ..   .....|+++.+...+.   +.++..++.+..+|.++...+++
T Consensus       320 ~~~~~~~~~~~~l~~l~~ll~---~~~~~i~~~~~~~l~nl~~~~~~  363 (503)
T d1wa5b_         320 DLQTQVVINAGVLPALRLLLS---SPKENIKKEACWTISNITAGNTE  363 (503)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTT---CSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHHHhhhccchHHHHHHHhc---CCCHHHHHHHHHHHHHHhhccHH
Confidence            43   3445677776654443   44578899999999999865443

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=1.7e-22  Score=184.73  Aligned_cols=270  Identities=14%  Similarity=0.182  Sum_probs=220.4

Q ss_pred             eeccc-cCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC-CChhHHhhcC
Q 021317           14 VFMET-YFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA-PNKPAIAASG   90 (314)
Q Consensus        14 v~~l~-~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~~~~~i~~~g   90 (314)
                      +.+++ ++++++|..++++|. ++..+++.+..+.+.|++|.|+.+|.++++++++.|+.+|.|++.++ ..+..+.+.|
T Consensus        62 v~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~  141 (434)
T d1q1sc_          62 VSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHG  141 (434)
T ss_dssp             HHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhh
Confidence            45564 456889999999999 66778888999999999999999999999999999999999998753 3344444433


Q ss_pred             -----------------------------------------------cHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-
Q 021317           91 -----------------------------------------------AAPLLVQILHSGSVQGRVDAVTALHYLSTCKE-  122 (314)
Q Consensus        91 -----------------------------------------------~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~-  122 (314)
                                                                     +++.++.++.+++++++..++++|.+|+..++ 
T Consensus       142 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~  221 (434)
T d1q1sc_         142 AIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE  221 (434)
T ss_dssp             CHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHH
T ss_pred             hhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhh
Confidence                                                           34455555666777888899999999986654 


Q ss_pred             CchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCCh-hhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHH
Q 021317          123 NSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE-EGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLS  201 (314)
Q Consensus       123 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~  201 (314)
                      ....+.+.|+++.|++++.+++.  .++..++.++.+++.+. +.+..++ +.|+++.++.++.+.++.+++.|+++|.+
T Consensus       222 ~~~~~~~~~~~~~Lv~ll~~~~~--~~~~~al~~l~~l~~~~~~~~~~~~-~~~~~~~l~~ll~~~~~~v~~~a~~~L~~  298 (434)
T d1q1sc_         222 RIEMVVKKGVVPQLVKLLGATEL--PIVTPALRAIGNIVTGTDEQTQKVI-DAGALAVFPSLLTNPKTNIQKEATWTMSN  298 (434)
T ss_dssp             HHHHHHTTTCHHHHHHHHTCSCH--HHHHHHHHHHHHHTTSCHHHHHHHH-HTTGGGGHHHHTTCSSHHHHHHHHHHHHH
T ss_pred             hHHHHhhcccchhcccccccchh--hhhhchhhhhhhHHhhhhHHHHHHH-hccccchHHHhhcccchhhhHHHHHHHhh
Confidence            44556678999999999988644  88899999999998875 4566677 79999999999999999999999999999


Q ss_pred             hhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCch----hhcchhhhHHHHHHHhhcCCCHHHHH
Q 021317          202 LCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE----KRLSSSVLEKIVYDIAARVDGADKAA  277 (314)
Q Consensus       202 L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~----~~~~~~~~~~lv~~l~~~~~~~~~~~  277 (314)
                      ++.... +....+.+.|+++.+++++.+.++.++..|+++|.+++.+...    ...+.|+++.++..+.   .++++..
T Consensus       299 l~~~~~-~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~---~~d~~~~  374 (434)
T d1q1sc_         299 ITAGRQ-DQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS---AKDTKII  374 (434)
T ss_dssp             HTTSCH-HHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTT---SSCHHHH
T ss_pred             hccccc-hhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhc---CCCHHHH
Confidence            998764 6788888999999999999999999999999999999875532    3456788888876664   4457788


Q ss_pred             HHHHHHHHHHHHH
Q 021317          278 ETAKRLLQDMVQR  290 (314)
Q Consensus       278 ~~A~~~L~~l~~~  290 (314)
                      ..+..+|.++.+.
T Consensus       375 ~~~l~~l~~ll~~  387 (434)
T d1q1sc_         375 QVILDAISNIFQA  387 (434)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            8888888888753

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.8e-22  Score=183.07  Aligned_cols=273  Identities=19%  Similarity=0.193  Sum_probs=211.3

Q ss_pred             eeeccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC-CCChhHHhhcC
Q 021317           13 EVFMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA-APNKPAIAASG   90 (314)
Q Consensus        13 ~v~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~i~~~g   90 (314)
                      .|.+|+++++++|..|+.+|. ++.+++++|..+.+.|+||+|+++|++++++++..|+.+|.+|+.. ++++..+.+.|
T Consensus         7 lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g   86 (457)
T d1xm9a1           7 AVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQN   86 (457)
T ss_dssp             HHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTT
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC
Confidence            467899999999999999999 7778999999999999999999999999999999999999999964 57889999999


Q ss_pred             cHHHHHHHhcc-CCHHHHHHHHHHHHHhcCCCCCc---------------------------------------------
Q 021317           91 AAPLLVQILHS-GSVQGRVDAVTALHYLSTCKENS---------------------------------------------  124 (314)
Q Consensus        91 ~l~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~~~---------------------------------------------  124 (314)
                      +++.++.++.+ .+++++..++++|.+++..+..+                                             
T Consensus        87 ~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~  166 (457)
T d1xm9a1          87 GIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGC  166 (457)
T ss_dssp             CHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHH
T ss_pred             ChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHHHHHHH
Confidence            99999999865 57888888888888887543221                                             


Q ss_pred             -----------hhhh-hcCCcHHHHHHhhccC------------------------------------------------
Q 021317          125 -----------SPIL-DATAVPPLINLLKDCK------------------------------------------------  144 (314)
Q Consensus       125 -----------~~i~-~~g~i~~Lv~lL~~~~------------------------------------------------  144 (314)
                                 ..+. ..|+++.++.++++..                                                
T Consensus       167 l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (457)
T d1xm9a1         167 LRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSS  246 (457)
T ss_dssp             HHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---------
T ss_pred             HHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhHHHh
Confidence                       1111 2355666666553210                                                


Q ss_pred             -------------------------------------------------CchHHHHHHHHHHHHhcCChh-----hhhHH
Q 021317          145 -------------------------------------------------KYSKFAEKATALLEILSSSEE-----GRIAI  170 (314)
Q Consensus       145 -------------------------------------------------~~~~~~~~a~~~L~~L~~~~~-----~~~~i  170 (314)
                                                                       ........+..++.+++....     .....
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~  326 (457)
T d1xm9a1         247 TGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLI  326 (457)
T ss_dssp             -------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHH
T ss_pred             hhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHHHHHHH
Confidence                                                             001123345566777765532     12333


Q ss_pred             HhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcC------CHHHHHHHHHHHHH
Q 021317          171 TNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEG------TFEAQERARTLLDL  244 (314)
Q Consensus       171 ~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~------~~~~~~~A~~~L~~  244 (314)
                      +.+.|+++.|+.++.+.++.++..++++|.+|+.+.  +++..+.+ ++++.|+.++...      +++++..|+++|.+
T Consensus       327 ~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~--~~~~~i~~-~~i~~li~~L~~~~~~~~~~~~v~~~a~~~L~~  403 (457)
T d1xm9a1         327 GLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP--LLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRN  403 (457)
T ss_dssp             HTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG--GGHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHH
T ss_pred             HHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhCh--hHHHHHHH-hhHHHHHHHHhccccCcCCcHHHHHHHHHHHHH
Confidence            337899999999999999999999999999999775  44666654 6799999987642      36789999999999


Q ss_pred             hhcCCch---hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Q 021317          245 LRDTPQE---KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR  290 (314)
Q Consensus       245 l~~~~~~---~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~  290 (314)
                      ++.+.++   .+.+.|+++.++..+.  ..++++.++.|..+|.+|.++
T Consensus       404 l~~~~~~~~~~l~~~g~i~~L~~l~~--~~~~~~~~~aA~~~L~~L~~~  450 (457)
T d1xm9a1         404 LMASQPQLAKQYFSSSMLNNIINLCR--SSASPKAAEAARLLLSDMWSS  450 (457)
T ss_dssp             HHTTCTHHHHHHCCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTSSS
T ss_pred             HhcCCHHHHHHHHHCCCHHHHHHHHh--CCCCHHHHHHHHHHHHHHHcC
Confidence            9865532   4667899998887665  344578999999999998653

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=6.7e-21  Score=164.01  Aligned_cols=198  Identities=21%  Similarity=0.130  Sum_probs=170.1

Q ss_pred             eccccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHH-HhcCCCHHHHHHHHHHHHHhccCC-CChhHHhhcCcH
Q 021317           15 FMETYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVE-LLKFQNGTLRELAAAAILTLSAAA-PNKPAIAASGAA   92 (314)
Q Consensus        15 ~~l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~-lL~~~~~~~~~~a~~~L~~La~~~-~~~~~i~~~g~l   92 (314)
                      .+..+.+.+.++.|+.+|....++.+|+..+.+.|++++++. ++++++++++..|+.+|++++.++ ..+..+.+.|++
T Consensus        24 ~~~~~~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i  103 (264)
T d1xqra1          24 EAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGAL  103 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred             HhhcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence            344567788999999999955678899999999999999986 678899999999999999999864 668888899999


Q ss_pred             HHHHHHhcc-CCHHHHHHHHHHHHHhcC-CCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCC-hhhhhH
Q 021317           93 PLLVQILHS-GSVQGRVDAVTALHYLST-CKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRIA  169 (314)
Q Consensus        93 ~~Lv~lL~~-~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~  169 (314)
                      |+|+++|.+ .++.++..++++|.+++. +++++..+.+.|+++.|+.++.+++.  .++..++.+|++++.. ++.+..
T Consensus       104 ~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~--~~~~~a~~~L~~l~~~~~~~~~~  181 (264)
T d1xqra1         104 RKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQ--KLKVKSAFLLQNLLVGHPEHKGT  181 (264)
T ss_dssp             HHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCH--HHHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCch--HHHHHHHHHHHHHHhccHHHHHH
Confidence            999999975 578999999999999995 45677888899999999999998754  7889999999999765 667777


Q ss_pred             HHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHH
Q 021317          170 ITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK  216 (314)
Q Consensus       170 i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~  216 (314)
                      +. +.|+++.|+.++.++++.+++.|+++|.+|+...++ .+..+..
T Consensus       182 ~~-~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~-~~~~~~~  226 (264)
T d1xqra1         182 LC-SMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQ-GVRECRE  226 (264)
T ss_dssp             HH-HTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHH-HHHHHHC
T ss_pred             HH-HhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHH-HHHHHHH
Confidence            77 799999999999999999999999999999988753 3444443

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=8.9e-21  Score=163.21  Aligned_cols=189  Identities=17%  Similarity=0.109  Sum_probs=167.3

Q ss_pred             CCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHH-HhccCCHHHHHHHHHHHHHhcCC-CCCchhhhhcCCcHHHH
Q 021317           60 FQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQ-ILHSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLI  137 (314)
Q Consensus        60 ~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~-lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv  137 (314)
                      ..+.+.+..|+.+|.+|+.+.+++..+...||+++++. ++++++++++..|+.+|.+++.+ +..+..+.+.|+++.|+
T Consensus        28 ~~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv  107 (264)
T d1xqra1          28 AADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL  107 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence            34567888999999999988899999999999999986 78889999999999999999964 56778888999999999


Q ss_pred             HHhhccCCchHHHHHHHHHHHHhcCCh-hhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHH
Q 021317          138 NLLKDCKKYSKFAEKATALLEILSSSE-EGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK  216 (314)
Q Consensus       138 ~lL~~~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~  216 (314)
                      .++.+.. +..++..++.+|++++.+. .++..+. ..|+++.|+.++++++..++..++++|++++..++ +.+..+.+
T Consensus       108 ~lL~~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~-~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~  184 (264)
T d1xqra1         108 RLLDRDA-CDTVRVKALFAISCLVREQEAGLLQFL-RLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHP-EHKGTLCS  184 (264)
T ss_dssp             HHHHHCS-CHHHHHHHHHHHHHHHTTCHHHHHHHH-HTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred             HHhhcCC-CHHHHHHHHHHHHHHhccchhhHHHHH-HhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccH-HHHHHHHH
Confidence            9997643 3478899999999999775 5566666 79999999999999999999999999999998765 67889999


Q ss_pred             cCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCch
Q 021317          217 EGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE  251 (314)
Q Consensus       217 ~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~  251 (314)
                      .|+++.|+.+++++++.+++.|+++|.+|+...+.
T Consensus       185 ~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~  219 (264)
T d1xqra1         185 MGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQ  219 (264)
T ss_dssp             TTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHH
T ss_pred             hhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHH
Confidence            99999999999999999999999999999987643

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=5e-19  Score=159.96  Aligned_cols=244  Identities=20%  Similarity=0.244  Sum_probs=184.8

Q ss_pred             CCcHHHHHHhcCCCHHHHHHHHHHHHHhcc-CCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhc-CCCCCchh
Q 021317           49 GAIPPLVELLKFQNGTLRELAAAAILTLSA-AAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLS-TCKENSSP  126 (314)
Q Consensus        49 g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~-~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs-~~~~~~~~  126 (314)
                      +.||.|+++|++++++++..|+.+|.||+. ++++|..+.+.|+||+|+++|++++++++..|+++|.||+ .+++++..
T Consensus         2 ~~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~   81 (457)
T d1xm9a1           2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CCHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            458999999999999999999999999997 5678999999999999999999999999999999999999 56778999


Q ss_pred             hhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcC--------------------------------------------
Q 021317          127 ILDATAVPPLINLLKDCKKYSKFAEKATALLEILSS--------------------------------------------  162 (314)
Q Consensus       127 i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~--------------------------------------------  162 (314)
                      +.+.|+++.++.++.+..+ ..++..++++|++++.                                            
T Consensus        82 i~~~g~v~~li~~l~~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~  160 (457)
T d1xm9a1          82 TRRQNGIREAVSLLRRTGN-AEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF  160 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCC-HHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred             HHHCCChHHHHHHHhccCc-HHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHH
Confidence            9999999999999876432 2455555555555544                                            


Q ss_pred             ------------ChhhhhHHHhccCCHHHHHHHhhc--------------------------------------------
Q 021317          163 ------------SEEGRIAITNSDGGILTLVETVED--------------------------------------------  186 (314)
Q Consensus       163 ------------~~~~~~~i~~~~g~v~~Lv~ll~~--------------------------------------------  186 (314)
                                  +++++..+....|+++.++.++.+                                            
T Consensus       161 ~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  240 (457)
T d1xm9a1         161 FNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA  240 (457)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhh
Confidence                        333444343345566666555421                                            


Q ss_pred             -------------------------------------------------------CCHHHHHHHHHHHHHhhccCcH---
Q 021317          187 -------------------------------------------------------GSLVSTQHAVGALLSLCQSCRD---  208 (314)
Q Consensus       187 -------------------------------------------------------~~~~~~~~A~~~L~~L~~~~~~---  208 (314)
                                                                             .++..++.+.+++.+++.....   
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~  320 (457)
T d1xm9a1         241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS  320 (457)
T ss_dssp             -------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHH
T ss_pred             hhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchH
Confidence                                                                   1234556677777777654321   


Q ss_pred             -HHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCch-hhcchhhhHHHHHHHhhcC---CCHHHHHHHHHHH
Q 021317          209 -KYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE-KRLSSSVLEKIVYDIAARV---DGADKAAETAKRL  283 (314)
Q Consensus       209 -~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~-~~~~~~~~~~lv~~l~~~~---~~~~~~~~~A~~~  283 (314)
                       ..+..+.+.|+++.|++++.++++.++..+++++.+|+.+... +.+..++++.++..|....   ..+++.+..|..+
T Consensus       321 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~~~i~~li~~L~~~~~~~~~~~~v~~~a~~~  400 (457)
T d1xm9a1         321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYT  400 (457)
T ss_dssp             HHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhccccCcCCcHHHHHHHHHH
Confidence             1244455689999999999999999999999999999987743 3455667787877765322   3346788999999


Q ss_pred             HHHHHHHHHH
Q 021317          284 LQDMVQRSME  293 (314)
Q Consensus       284 L~~l~~~s~~  293 (314)
                      |.++...+++
T Consensus       401 L~~l~~~~~~  410 (457)
T d1xm9a1         401 VRNLMASQPQ  410 (457)
T ss_dssp             HHHHHTTCTH
T ss_pred             HHHHhcCCHH
Confidence            9999865544

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=2e-08  Score=93.83  Aligned_cols=255  Identities=13%  Similarity=0.067  Sum_probs=174.3

Q ss_pred             eccccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHH
Q 021317           15 FMETYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPL   94 (314)
Q Consensus        15 ~~l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~   94 (314)
                      ..+++.++.++..+..++......-. +.. .....+|.+..++.+++++++..+...+..+...-.. ..+ ....+|.
T Consensus       331 ~~~~d~~~~vr~~~~~~l~~~~~~~~-~~~-~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~-~~~-~~~ll~~  406 (588)
T d1b3ua_         331 ELVSDANQHVKSALASVIMGLSPILG-KDN-TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI-RQL-SQSLLPA  406 (588)
T ss_dssp             HHHTCSCHHHHHHHHTTGGGGHHHHC-HHH-HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH-HHH-HHHHHHH
T ss_pred             HhhcCCChHHHHHHHHHHhhhhhccc-hhH-HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcch-hhh-hhHHHHH
Confidence            34566778888888777762221111 111 1234678899999999999999888877766542211 111 2356788


Q ss_pred             HHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhcc
Q 021317           95 LVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSD  174 (314)
Q Consensus        95 Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~  174 (314)
                      +..++.+.++.++..++..+..++..-.  .........+.+..++.+..  ..++..|+.+|..|+..... ...  ..
T Consensus       407 l~~~~~d~~~~~r~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~D~~--~~VR~~A~~~L~~l~~~~~~-~~~--~~  479 (588)
T d1b3ua_         407 IVELAEDAKWRVRLAIIEYMPLLAGQLG--VEFFDEKLNSLCMAWLVDHV--YAIREAATSNLKKLVEKFGK-EWA--HA  479 (588)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHHHHHC--GGGCCHHHHHHHHHGGGCSS--HHHHHHHHHHHHHHHHHHCH-HHH--HH
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHHHcC--hHhHHHHHHHHHHhhccCCc--hhHHHHHHHHHHHHHHHhCc-HHH--HH
Confidence            8999999999999999999998874211  11122234566677776653  37888899998888653221 111  23


Q ss_pred             CCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhc
Q 021317          175 GGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRL  254 (314)
Q Consensus       175 g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~  254 (314)
                      ..++.+..++.+.+...|..++.++..+....+    ........+|.|++++.+..+.+|..++.+|..+.........
T Consensus       480 ~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~----~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~~~  555 (588)
T d1b3ua_         480 TIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG----QDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL  555 (588)
T ss_dssp             HTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH----HHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcC----hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcHhH
Confidence            478889999988888899999999988875432    2233445899999999999999999999999999765544333


Q ss_pred             chhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 021317          255 SSSVLEKIVYDIAARVDGADKAAETAKRLLQDM  287 (314)
Q Consensus       255 ~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l  287 (314)
                      ... +.+++..|.  .|.+.+++..|..+|..+
T Consensus       556 ~~~-i~~~l~~L~--~D~d~dVr~~A~~al~~l  585 (588)
T d1b3ua_         556 QSE-VKPILEKLT--QDQDVDVKYFAQEALTVL  585 (588)
T ss_dssp             HHH-HHHHHHHHT--TCSSHHHHHHHHHHHHHT
T ss_pred             HHH-HHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence            333 334555554  577788999999998765

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=2.2e-08  Score=93.47  Aligned_cols=257  Identities=12%  Similarity=0.132  Sum_probs=152.7

Q ss_pred             cccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHH
Q 021317           17 ETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLL   95 (314)
Q Consensus        17 l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~L   95 (314)
                      ++++++.+|..++.++. .+...+..   -.....+|.+..++.+++..+|..++.+|.+++..-.  ..+.....++.+
T Consensus       212 ~~d~~~~vr~~a~~~l~~i~~~~~~~---~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~--~~~~~~~l~~~l  286 (588)
T d1b3ua_         212 ASDEQDSVRLLAVEACVNIAQLLPQE---DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG--PEITKTDLVPAF  286 (588)
T ss_dssp             HTCSCHHHHTTHHHHHHHHHHHSCHH---HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC--HHHHHHTHHHHH
T ss_pred             hcCCchhhHHHHHHHHHHhhccCCHH---HHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhh--hhhhhhhhhHHH
Confidence            34455555555555555 22211110   0112245666666666677777777777777654211  112334578888


Q ss_pred             HHHhccCCHHHHHHHHHHHHHhcCC--CCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhc
Q 021317           96 VQILHSGSVQGRVDAVTALHYLSTC--KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNS  173 (314)
Q Consensus        96 v~lL~~~~~~~~~~a~~~L~nLs~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~  173 (314)
                      ..++.+++++++..++..|..++..  ........-...++.+...+.+.+.  .++..+..++..++..-. .....  
T Consensus       287 ~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~~~--~vr~~~~~~l~~~~~~~~-~~~~~--  361 (588)
T d1b3ua_         287 QNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQ--HVKSALASVIMGLSPILG-KDNTI--  361 (588)
T ss_dssp             HHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCH--HHHHHHHTTGGGGHHHHC-HHHHH--
T ss_pred             HHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhcCCCh--HHHHHHHHHHhhhhhccc-hhHHH--
Confidence            8999999999999999999888743  2223322234567777777776533  666666555554432211 11122  


Q ss_pred             cCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhh
Q 021317          174 DGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKR  253 (314)
Q Consensus       174 ~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~  253 (314)
                      ...+|.+..++++.++.++..++..+..+...-..   ..+ ....++.+.+++.+.+++++..++.++..++..-....
T Consensus       362 ~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~---~~~-~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~  437 (588)
T d1b3ua_         362 EHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI---RQL-SQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF  437 (588)
T ss_dssp             HHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH---HHH-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcch---hhh-hhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcChHh
Confidence            34678888899888888888888887776653221   111 12356777778888888888888888888765332223


Q ss_pred             cchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Q 021317          254 LSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR  290 (314)
Q Consensus       254 ~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~  290 (314)
                      ......+.+...+   .+.....+..|...|..+.+.
T Consensus       438 ~~~~l~~~l~~~l---~D~~~~VR~~A~~~L~~l~~~  471 (588)
T d1b3ua_         438 FDEKLNSLCMAWL---VDHVYAIREAATSNLKKLVEK  471 (588)
T ss_dssp             CCHHHHHHHHHGG---GCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhc---cCCchhHHHHHHHHHHHHHHH
Confidence            3333333332222   355567778888888777653

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.74  E-value=2.5e-07  Score=77.26  Aligned_cols=161  Identities=11%  Similarity=-0.012  Sum_probs=106.4

Q ss_pred             eeeccccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcH
Q 021317           13 EVFMETYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAA   92 (314)
Q Consensus        13 ~v~~l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l   92 (314)
                      ++..|+++++.+|..|+.+|.....          ...++.|+++++++++.++..|+.+|..+.........+     +
T Consensus        24 L~~~L~d~~~~vR~~A~~~L~~~~~----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~~~-----~   88 (276)
T d1oyza_          24 LFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNV-----F   88 (276)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHH-----H
T ss_pred             HHHHhcCCCHHHHHHHHHHHHhhCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccccch-----H
Confidence            3578899999999999999874321          234799999999999999999999999986654433322     2


Q ss_pred             HHHH-HHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHH
Q 021317           93 PLLV-QILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAIT  171 (314)
Q Consensus        93 ~~Lv-~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~  171 (314)
                      +.+. .+++++++.++..++.+|.++......    .....++.+...+.+..  ..++..+..++....          
T Consensus        89 ~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~----~~~~~~~~l~~~~~d~~--~~vr~~a~~~l~~~~----------  152 (276)
T d1oyza_          89 NILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKS--TNVRRATAFAISVIN----------  152 (276)
T ss_dssp             HHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSC--HHHHHHHHHHHHTC-----------
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHccccch----hhHHHHHHHHHHhcCcc--hHHHHHHHHHHhhcc----------
Confidence            3333 346788999999999999998744321    11234556666666543  355555555554321          


Q ss_pred             hccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcc
Q 021317          172 NSDGGILTLVETVEDGSLVSTQHAVGALLSLCQS  205 (314)
Q Consensus       172 ~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~  205 (314)
                       ....++.+..++.+.+..++..+..++..+...
T Consensus       153 -~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  185 (276)
T d1oyza_         153 -DKATIPLLINLLKDPNGDVRNWAAFAININKYD  185 (276)
T ss_dssp             ---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC
T ss_pred             -hHHHHHHHHHhcccccchhhhhHHHHHHhhhcc
Confidence             234566666666666666666666666655444

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.62  E-value=1.7e-06  Score=71.94  Aligned_cols=137  Identities=15%  Similarity=0.004  Sum_probs=100.4

Q ss_pred             HhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCch
Q 021317           46 ATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSS  125 (314)
Q Consensus        46 ~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~  125 (314)
                      .+....+.|+++|+++++.+|..|+.+|..+.          ...+++.++++++++++.++..|+.+|..+........
T Consensus        16 ~~~~~~~~L~~~L~d~~~~vR~~A~~~L~~~~----------~~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~   85 (276)
T d1oyza_          16 CKKLNDDELFRLLDDHNSLKRISSARVLQLRG----------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED   85 (276)
T ss_dssp             HHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH
T ss_pred             cccCCHHHHHHHhcCCCHHHHHHHHHHHHhhC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccccc
Confidence            45566788999999999999999999998773          34578999999999999999999999999875544333


Q ss_pred             hhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 021317          126 PILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLC  203 (314)
Q Consensus       126 ~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~  203 (314)
                      .+     ++.+...+.+. +++.++..+..+|.+++......     ....++.+...+.+.+..++..++.++..+.
T Consensus        86 ~~-----~~~l~~~~l~d-~~~~vr~~a~~aL~~~~~~~~~~-----~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~  152 (276)
T d1oyza_          86 NV-----FNILNNMALND-KSACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITAFDKSTNVRRATAFAISVIN  152 (276)
T ss_dssp             HH-----HHHHHHHHHHC-SCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-
T ss_pred             ch-----HHHHHHHHhcC-CChhHHHHHHHHHHHHccccchh-----hHHHHHHHHHHhcCcchHHHHHHHHHHhhcc
Confidence            22     33445544432 24478888999998876543222     1235667777788888888888887776653

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=1e-06  Score=86.17  Aligned_cols=274  Identities=12%  Similarity=0.031  Sum_probs=163.2

Q ss_pred             eccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC--CCChhHHhhcCc
Q 021317           15 FMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA--APNKPAIAASGA   91 (314)
Q Consensus        15 ~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~--~~~~~~i~~~g~   91 (314)
                      ..+.++++..|+.|+.++. .+.+..+.-.... ...++.|+..+.++++.+|..++++|+.++..  +..... .-...
T Consensus       402 ~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l-~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~-~~~~~  479 (888)
T d1qbkb_         402 ELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDT-YLKPL  479 (888)
T ss_dssp             HTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTH-HHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHH-HTTTH
T ss_pred             HhhccchhHHHHHHHHHhhhhhhhHHHHhcccc-hhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhh-hhhhh
Confidence            4678889999999999988 5544333222211 24578888999999999999999999998863  222222 23568


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHhcCCC--CCch-----------------------------hhhh--------cCC
Q 021317           92 APLLVQILHSGSVQGRVDAVTALHYLSTCK--ENSS-----------------------------PILD--------ATA  132 (314)
Q Consensus        92 l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~--~~~~-----------------------------~i~~--------~g~  132 (314)
                      ++.++..+.++++.++..|+++|.++....  ....                             .+.+        ...
T Consensus       480 l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~  559 (888)
T d1qbkb_         480 MTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEY  559 (888)
T ss_dssp             HHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHH
Confidence            889999999999999999999999887321  1000                             0000        000


Q ss_pred             cHHHHHHh----hc---cCCc-hH----------------------HHHHHHH---------------------------
Q 021317          133 VPPLINLL----KD---CKKY-SK----------------------FAEKATA---------------------------  155 (314)
Q Consensus       133 i~~Lv~lL----~~---~~~~-~~----------------------~~~~a~~---------------------------  155 (314)
                      ++.++..+    ..   .+.. ..                      +...+..                           
T Consensus       560 ~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  639 (888)
T d1qbkb_         560 IQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFM  639 (888)
T ss_dssp             HHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHH
T ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHH
Confidence            11111111    10   0000 00                      0011111                           


Q ss_pred             -----HHHHhcCC-hhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhc
Q 021317          156 -----LLEILSSS-EEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE  229 (314)
Q Consensus       156 -----~L~~L~~~-~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~  229 (314)
                           ++..+... ...-..++.....++.+...+.+.++.+++.|..++..++...++..+..+-  ..++.|.+.+.+
T Consensus       640 ~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~--~~~~~l~~~L~~  717 (888)
T d1qbkb_         640 IVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIA--DFMPILGTNLNP  717 (888)
T ss_dssp             HHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHH--HHHHHHHHTCCG
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHH--HHHHHHHHHhCc
Confidence                 11111110 0001111112334556667777788899999999999888765432222221  256667777777


Q ss_pred             CCHHHHHHHHHHHHHhhcCCchhhcc--hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 021317          230 GTFEAQERARTLLDLLRDTPQEKRLS--SSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSME  293 (314)
Q Consensus       230 ~~~~~~~~A~~~L~~l~~~~~~~~~~--~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~~  293 (314)
                      +.+.++.+|++++..++....+....  ..+++.++..+.. .+.....++.++.+|+++....++
T Consensus       718 ~~~~v~~~a~~~ig~ia~~~~~~~~py~~~il~~L~~il~~-~~~~~~v~~n~~~~lgrl~~~~p~  782 (888)
T d1qbkb_         718 EFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINR-PNTPKTLLENTAITIGRLGYVCPQ  782 (888)
T ss_dssp             GGHHHHHHHHHHHHHHHHHTGGGGGGGSHHHHHHHHHHHTC-TTCCHHHHHHHHHHHHHHHHHCHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHcC-CCccHHHHHHHHHHHHHHHHHCHH
Confidence            88899999999999998655432221  3466666666652 222355789999999999876665

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.36  E-value=4.6e-08  Score=71.12  Aligned_cols=108  Identities=19%  Similarity=0.098  Sum_probs=84.5

Q ss_pred             cccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHH
Q 021317           17 ETYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLV   96 (314)
Q Consensus        17 l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv   96 (314)
                      |+++|+.+|..|+.+|....           ...++.|+..|.++++.++..|+.+|.++.          ..+.++.|+
T Consensus         1 L~D~~~~VR~~A~~aL~~~~-----------~~~~~~L~~~l~d~~~~vR~~a~~~L~~~~----------~~~~~~~L~   59 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMG-----------DEAFEPLLESLSNEDWRIRGAAAWIIGNFQ----------DERAVEPLI   59 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCS-----------STTHHHHHHGGGCSCHHHHHHHHHHHGGGC----------SHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHhC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhcc----------hhhhHHHHH
Confidence            45667777777777765321           235788999999999999999999998763          345789999


Q ss_pred             HHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHH
Q 021317           97 QILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALL  157 (314)
Q Consensus        97 ~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L  157 (314)
                      .+|.++++.++..++.+|..+..          .+.++.|..++++.+.  .++..|..+|
T Consensus        60 ~~l~d~~~~VR~~a~~aL~~i~~----------~~~~~~L~~ll~d~~~--~vr~~A~~aL  108 (111)
T d1te4a_          60 KLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTG--FARKVAVNYL  108 (111)
T ss_dssp             HHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCT--HHHHHHHHHG
T ss_pred             hhhccchhHHHHHHHHHHHHhCc----------cchHHHHHHHHcCCCH--HHHHHHHHHH
Confidence            99999999999999999988742          3478888888887654  7777777665

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=4.8e-06  Score=73.78  Aligned_cols=242  Identities=12%  Similarity=0.050  Sum_probs=147.5

Q ss_pred             CCHHHHHHHHHHhH-hhccCchhHH-HHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCC--ChhHHhhcCcHHHH
Q 021317           20 FEGYARRLNLMGPL-WQLSKTRNKV-KIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP--NKPAIAASGAAPLL   95 (314)
Q Consensus        20 ~~~~~~~~a~~al~-l~~~~~~~~~-~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~--~~~~i~~~g~l~~L   95 (314)
                      .+.+++..++.++. +......... ........+.+...+.+++++++..++.+|..+.....  .... ......+.+
T Consensus       185 ~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~-l~~~~~~~~  263 (458)
T d1ibrb_         185 PSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETY-MGPALFAIT  263 (458)
T ss_dssp             CCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTT-TTTTHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHH
Confidence            45778888888887 4433222211 11222345667777888899999999999999876321  1111 122334455


Q ss_pred             HHHhccCCHHHHHHHHHHHHHhcCCC-----------------CCchhhhh----cCCcHHHHHHhhcc-----CCchHH
Q 021317           96 VQILHSGSVQGRVDAVTALHYLSTCK-----------------ENSSPILD----ATAVPPLINLLKDC-----KKYSKF  149 (314)
Q Consensus        96 v~lL~~~~~~~~~~a~~~L~nLs~~~-----------------~~~~~i~~----~g~i~~Lv~lL~~~-----~~~~~~  149 (314)
                      ...+.+.++.++..++..+..++...                 ........    ...++.+.+.+.+.     +....+
T Consensus       264 ~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  343 (458)
T d1ibrb_         264 IEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNP  343 (458)
T ss_dssp             HHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSH
T ss_pred             HHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccH
Confidence            66677888999999998888876311                 01111111    12233444444321     111135


Q ss_pred             HHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhc
Q 021317          150 AEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE  229 (314)
Q Consensus       150 ~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~  229 (314)
                      +..+..++..++.....  .+.  ...++.+...+.+++..+|+.|+.+|..++.....+..... -...++.|+..+++
T Consensus       344 ~~~a~~~l~~l~~~~~~--~~~--~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~-l~~i~~~l~~~l~d  418 (458)
T d1ibrb_         344 CKAAGVCLMLLATCCED--DIV--PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKD  418 (458)
T ss_dssp             HHHHHHHHHHHHHHTTT--THH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGC
T ss_pred             HHHHHHHHHHHHHhccH--hhh--hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHH-HHHHHHHHHHHhCC
Confidence            55666666666543221  122  12556777778888899999999999999865321111111 13578889999999


Q ss_pred             CCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHh
Q 021317          230 GTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIA  267 (314)
Q Consensus       230 ~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~  267 (314)
                      .++.+|..|+++|..++..-.+.......+++++..|.
T Consensus       419 ~~~~VR~~a~~~l~~i~~~~~~~~~~~~~l~~ll~~ll  456 (458)
T d1ibrb_         419 PSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLI  456 (458)
T ss_dssp             SCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHh
Confidence            99999999999999998755433333445777776664

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.28  E-value=6.4e-06  Score=73.58  Aligned_cols=228  Identities=10%  Similarity=0.013  Sum_probs=154.6

Q ss_pred             ccCCHHHHHHHHHHhHhhccCchhHHHHH--hcCCcHHHHHHhcCC-----------------CHHHHHHHHHHHHHhcc
Q 021317           18 TYFEGYARRLNLMGPLWQLSKTRNKVKIA--TAGAIPPLVELLKFQ-----------------NGTLRELAAAAILTLSA   78 (314)
Q Consensus        18 ~~~~~~~~~~a~~al~l~~~~~~~~~~l~--~~g~v~~Lv~lL~~~-----------------~~~~~~~a~~~L~~La~   78 (314)
                      .+++.+.+..++.++......++.|..+.  +...+++|++.|+..                 +.+++-+++-+++-|+.
T Consensus       175 ~~~~~~~~~i~v~~lq~llr~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF  254 (477)
T d1ho8a_         175 NIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTF  254 (477)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTT
T ss_pred             cccccchHHHHHHHHHHHhcCccHHHHHHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHc
Confidence            56677888888888885556688888875  345577777777430                 23567788999999999


Q ss_pred             CCCChhHHhhc--CcHHHHHHHhcc-CCHHHHHHHHHHHHHhcCCCC--Cc----hhhhhcCCcHHHHHHhhc-cCCchH
Q 021317           79 AAPNKPAIAAS--GAAPLLVQILHS-GSVQGRVDAVTALHYLSTCKE--NS----SPILDATAVPPLINLLKD-CKKYSK  148 (314)
Q Consensus        79 ~~~~~~~i~~~--g~l~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~--~~----~~i~~~g~i~~Lv~lL~~-~~~~~~  148 (314)
                      +++....+.+.  +.++.++++++. ..+.+..-++.+|.|+.....  +.    ..++..+++ ++++.|+. +-.+++
T Consensus       255 ~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l-~~l~~L~~r~~~Ded  333 (477)
T d1ho8a_         255 NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNAL-PTVQSLSERKYSDEE  333 (477)
T ss_dssp             SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHH-HHHHHHHSSCCSSHH
T ss_pred             CHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchh-HHHHHHhcCCCCCHH
Confidence            87777777665  458899999865 468888999999999996543  22    224445555 44555554 334445


Q ss_pred             HHHHHHH-------HHHHhcCChhh---------------h---------hHHHhc-cCCHHHHHHHhhc----------
Q 021317          149 FAEKATA-------LLEILSSSEEG---------------R---------IAITNS-DGGILTLVETVED----------  186 (314)
Q Consensus       149 ~~~~a~~-------~L~~L~~~~~~---------------~---------~~i~~~-~g~v~~Lv~ll~~----------  186 (314)
                      +.+..-.       -+..+++.++.               +         ..+-.+ -..+..|+.+|++          
T Consensus       334 l~edl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s  413 (477)
T d1ho8a_         334 LRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAK  413 (477)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSH
T ss_pred             HHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccC
Confidence            4322110       01122322222               1         122211 1236789999862          


Q ss_pred             CCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 021317          187 GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRD  247 (314)
Q Consensus       187 ~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~  247 (314)
                      .++.+...||.=++.++.+.| ..|..+.+-|+=..+++++.+.+++++.+|..++..+-.
T Consensus       414 ~D~~~lAVAc~DiGefvr~~P-~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~  473 (477)
T d1ho8a_         414 QEKIIIQVALNDITHVVELLP-ESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG  473 (477)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCT-THHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             CCcceeehhhhhHHHHHHHCc-chhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            346677888889999999887 567777778888888899999999999999999988754

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=1.3e-06  Score=87.70  Aligned_cols=264  Identities=13%  Similarity=0.057  Sum_probs=162.9

Q ss_pred             eccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHH
Q 021317           15 FMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAP   93 (314)
Q Consensus        15 ~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~   93 (314)
                      +.+.++|+..|..|+..|. ....+......-....+++.|+..|.+.++++|..|+.+|..+...-..  ... ...++
T Consensus        10 ~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~--~~~-~~l~~   86 (1207)
T d1u6gc_          10 EKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQV-ETIVD   86 (1207)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HHH-HHHHH
T ss_pred             HhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcH--hhH-HHHHH
Confidence            4568899999999998777 3322111100001123578899999999999999999999998764321  111 34577


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHHhcCC----CCCchhh--hhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhh
Q 021317           94 LLVQILHSGSVQGRVDAVTALHYLSTC----KENSSPI--LDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGR  167 (314)
Q Consensus        94 ~Lv~lL~~~~~~~~~~a~~~L~nLs~~----~~~~~~i--~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~  167 (314)
                      .|+..+.+++...+..+..+|..+...    ..+....  +-...++.+...+... .+..++..++.++..+......-
T Consensus        87 ~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~v~~~al~~l~~l~~~~g~~  165 (1207)
T d1u6gc_          87 TLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQ-EDVSVQLEALDIMADMLSRQGGL  165 (1207)
T ss_dssp             HHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCC-SCHHHHHHHHHHHHHHHHHTCSS
T ss_pred             HHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHHHHHHhhHh
Confidence            788878788888888888888776521    1111111  1122334444444443 33467777888887765432211


Q ss_pred             -hHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhh-hcCCHHHHHHHHHHHHHh
Q 021317          168 -IAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLT-VEGTFEAQERARTLLDLL  245 (314)
Q Consensus       168 -~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll-~~~~~~~~~~A~~~L~~l  245 (314)
                       ...  ....++.++..+.+.+..+|..|+.+|..++...+++.-     ...++.+++.+ .+.+...+..+..++..+
T Consensus       166 l~~~--~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~-----~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l  238 (1207)
T d1u6gc_         166 LVNF--HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVF-----VDLIEHLLSELSKNDSMSTTRTYIQCIAAI  238 (1207)
T ss_dssp             CTTT--HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----C-----TTHHHHHHHHHHHTCSSCSCTTHHHHHHHH
T ss_pred             hHHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHHH-----HHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence             111  123566777888888899999999999999876542111     23466677644 445566677778888888


Q ss_pred             hcCCchhhcc--hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHH
Q 021317          246 RDTPQEKRLS--SSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSM  292 (314)
Q Consensus       246 ~~~~~~~~~~--~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~  292 (314)
                      ++..+.....  ..+++.++..+.   +.+++.++.|..++..+....+
T Consensus       239 ~~~~~~~~~~~l~~i~~~l~~~l~---~~~~~~r~~al~~l~~l~~~~~  284 (1207)
T d1u6gc_         239 SRQAGHRIGEYLEKIIPLVVKFCN---VDDDELREYCIQAFESFVRRCP  284 (1207)
T ss_dssp             HHHSSGGGTTSCTTHHHHHHHHHS---SCCTTTHHHHHHHHHHHHHCTT
T ss_pred             HHHcchhhHHHHHHHHHHHHHHhc---CccHHHHHHHHHHHHHHHHhCh
Confidence            7655432222  334554444443   4456788999999999987654

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=4e-05  Score=67.59  Aligned_cols=264  Identities=10%  Similarity=0.075  Sum_probs=154.9

Q ss_pred             CCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCC--CHHHHHHHHHHHHHhccCCCC--hhHHhhcCcHHH
Q 021317           20 FEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQ--NGTLRELAAAAILTLSAAAPN--KPAIAASGAAPL   94 (314)
Q Consensus        20 ~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~La~~~~~--~~~i~~~g~l~~   94 (314)
                      .++..++.++.++. ...........-.-...++.++..+.++  +.+++..+..++.++......  ..........+.
T Consensus       141 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~  220 (458)
T d1ibrb_         141 STEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQV  220 (458)
T ss_dssp             CCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhh
Confidence            34566777777776 3332222211111233457777777653  578999999999988754211  111222345667


Q ss_pred             HHHHhccCCHHHHHHHHHHHHHhcCC-CCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhH----
Q 021317           95 LVQILHSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIA----  169 (314)
Q Consensus        95 Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~----  169 (314)
                      +..++.+++++++..++.+|..+... ++.-...+.....+.+...+.+.  ...++..++..+..++........    
T Consensus       221 l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~a~~~l~~i~~~~~~~~~~~~~  298 (458)
T d1ibrb_         221 VCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD--IDEVALQGIEFWSNVCDEEMDLAIEASE  298 (458)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS--SHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccc--cHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            77788889999999999999999743 22111111222223333444443  336677777777666533211000    


Q ss_pred             --------------HH--hccCCHHHHHHHhhc-------CCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHh
Q 021317          170 --------------IT--NSDGGILTLVETVED-------GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRL  226 (314)
Q Consensus       170 --------------i~--~~~g~v~~Lv~ll~~-------~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~l  226 (314)
                                    ..  .....++.+...+.+       ++..++..|..++..++...+++...     ..++.+.+.
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~-----~l~~~i~~~  373 (458)
T d1ibrb_         299 AAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP-----HVLPFIKEH  373 (458)
T ss_dssp             TTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHH-----HHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhhh-----HHHHHHHHH
Confidence                          00  001123344444432       22357788888888887654332222     245667778


Q ss_pred             hhcCCHHHHHHHHHHHHHhhcCCchhhcc---hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 021317          227 TVEGTFEAQERARTLLDLLRDTPQEKRLS---SSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSME  293 (314)
Q Consensus       227 l~~~~~~~~~~A~~~L~~l~~~~~~~~~~---~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~~  293 (314)
                      +++.+..+|+.|..+|..++.........   ...++.++..+.   +..++.+..|..+|.++...-++
T Consensus       374 l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~---d~~~~VR~~a~~~l~~i~~~~~~  440 (458)
T d1ibrb_         374 IKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMK---DPSVVVRDTAAWTVGRICELLPE  440 (458)
T ss_dssp             TTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGG---CSCHHHHHHHHHHHHHHHHHGGG
T ss_pred             hcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHhhc
Confidence            88889999999999999998765332222   335555554443   66789999999999999865443

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.20  E-value=1.4e-07  Score=68.42  Aligned_cols=107  Identities=22%  Similarity=0.183  Sum_probs=82.8

Q ss_pred             cCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHH
Q 021317           59 KFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLIN  138 (314)
Q Consensus        59 ~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~  138 (314)
                      .++++.+|..|+.+|..+.           ...+++|++.|.++++.++..++.+|.++..          .++++.|..
T Consensus         2 ~D~~~~VR~~A~~aL~~~~-----------~~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~----------~~~~~~L~~   60 (111)
T d1te4a_           2 ADENKWVRRDVSTALSRMG-----------DEAFEPLLESLSNEDWRIRGAAAWIIGNFQD----------ERAVEPLIK   60 (111)
T ss_dssp             CSSCCCSSSSCCSSTTSCS-----------STTHHHHHHGGGCSCHHHHHHHHHHHGGGCS----------HHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHhC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhcch----------hhhHHHHHh
Confidence            4455666666655555431           3468999999999999999999999977542          347899999


Q ss_pred             HhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHH
Q 021317          139 LLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGAL  199 (314)
Q Consensus       139 lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L  199 (314)
                      +|++.++  .++..+..+|..+.           ..+.++.|..++.+.++.++..|+.+|
T Consensus        61 ~l~d~~~--~VR~~a~~aL~~i~-----------~~~~~~~L~~ll~d~~~~vr~~A~~aL  108 (111)
T d1te4a_          61 LLEDDSG--FVRSGAARSLEQIG-----------GERVRAAMEKLAETGTGFARKVAVNYL  108 (111)
T ss_dssp             HHHHCCT--HHHHHHHHHHHHHC-----------SHHHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred             hhccchh--HHHHHHHHHHHHhC-----------ccchHHHHHHHHcCCCHHHHHHHHHHH
Confidence            9988654  88889999987663           245678888999999999999998876

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=0.00052  Score=65.35  Aligned_cols=266  Identities=11%  Similarity=0.058  Sum_probs=158.4

Q ss_pred             CCHHHHHHHHHHhH-hhccCchhH-HHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC-CChhHHhhcCcHHHHH
Q 021317           20 FEGYARRLNLMGPL-WQLSKTRNK-VKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA-PNKPAIAASGAAPLLV   96 (314)
Q Consensus        20 ~~~~~~~~a~~al~-l~~~~~~~~-~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~~~~~i~~~g~l~~Lv   96 (314)
                      ++.+++..++.++. ........- ......-.++.+...+.+++++++..++.+|..+...- +.-.........+.+.
T Consensus       186 ~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~  265 (876)
T d1qgra_         186 PSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITI  265 (876)
T ss_dssp             SCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            45678888888776 332222111 01111123456677778889999999999999987632 2212222334555666


Q ss_pred             HHhccCCHHHHHHHHHHHHHhcCC-----------------CCCchhhhh----cCCcHHHHHHhhccC-----CchHHH
Q 021317           97 QILHSGSVQGRVDAVTALHYLSTC-----------------KENSSPILD----ATAVPPLINLLKDCK-----KYSKFA  150 (314)
Q Consensus        97 ~lL~~~~~~~~~~a~~~L~nLs~~-----------------~~~~~~i~~----~g~i~~Lv~lL~~~~-----~~~~~~  150 (314)
                      ..+.+.+++++..++..+..++..                 +........    ...++.+...+....     +...+.
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  345 (876)
T d1qgra_         266 EAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPC  345 (876)
T ss_dssp             HHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHH
T ss_pred             HHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHH
Confidence            777788888888888777666531                 111111111    123333444433211     111345


Q ss_pred             HHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcC
Q 021317          151 EKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEG  230 (314)
Q Consensus       151 ~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~  230 (314)
                      ..+..++..++.....  .+.  .-.++.+...+.+.+...++.++..+..+............ -...++.+...+.+.
T Consensus       346 ~~a~~~l~~l~~~~~~--~~~--~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~l~~~l~d~  420 (876)
T d1qgra_         346 KAAGVCLMLLATCCED--DIV--PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDP  420 (876)
T ss_dssp             HHHHHHHHHHHHHHGG--GGH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHhhh--hhh--hhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHH-HHHHHHHHHHhhcCC
Confidence            5666666655543221  122  11344555566677788889999999988765432211211 234788889999999


Q ss_pred             CHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Q 021317          231 TFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR  290 (314)
Q Consensus       231 ~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~  290 (314)
                      ++.++..|.+++..++.............+.++..+....+..++.+.++...+.++...
T Consensus       421 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~l~~l~~~  480 (876)
T d1qgra_         421 SVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEA  480 (876)
T ss_dssp             SHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHcchhhhhHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999875544333344455565655544555688888999999888754

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.91  E-value=0.00017  Score=64.24  Aligned_cols=268  Identities=10%  Similarity=0.041  Sum_probs=164.7

Q ss_pred             eccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHh-cCCCHHHHHHHHHHHHHhccCCCChhHHh--hcC
Q 021317           15 FMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELL-KFQNGTLRELAAAAILTLSAAAPNKPAIA--ASG   90 (314)
Q Consensus        15 ~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL-~~~~~~~~~~a~~~L~~La~~~~~~~~i~--~~g   90 (314)
                      .++.+++.-....+...+. ++..+..+....-...-...++.-+ .+++.+...-++.++..+...++.|..+.  +..
T Consensus       129 ~~l~~~d~~~~~~s~~i~~ll~~~~~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R~~fw~~~~~  208 (477)
T d1ho8a_         129 VSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKK  208 (477)
T ss_dssp             HCSCSSHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHH
T ss_pred             HhccCchhHHHHHHHHHHHHHHhccccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcCccHHHHHHHcccc
Confidence            3455666666666665555 4443333322211111122333333 56677788888889998888888888875  445


Q ss_pred             cHHHHHHHhccC-----------------CHHHHHHHHHHHHHhcCCCCCchhhhhc--CCcHHHHHHhhccCCchHHHH
Q 021317           91 AAPLLVQILHSG-----------------SVQGRVDAVTALHYLSTCKENSSPILDA--TAVPPLINLLKDCKKYSKFAE  151 (314)
Q Consensus        91 ~l~~Lv~lL~~~-----------------~~~~~~~a~~~L~nLs~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~~~~~~  151 (314)
                      .+++++..|+..                 +....-+++.+++-|+.+++....+.+.  +.++.|+++++... .+++.+
T Consensus       209 ~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~-KEKvvR  287 (477)
T d1ho8a_         209 FMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITI-KEKVSR  287 (477)
T ss_dssp             HHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCC-SHHHHH
T ss_pred             hHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhhh-HHHHHH
Confidence            778888887541                 2366889999999999988877777765  46999999998854 458889


Q ss_pred             HHHHHHHHhcCChh--h----hhHHHhccCCHHHHHHHhhc---CCHHHHHHHHHHH--------HHhhccCcHHHHHH-
Q 021317          152 KATALLEILSSSEE--G----RIAITNSDGGILTLVETVED---GSLVSTQHAVGAL--------LSLCQSCRDKYRQL-  213 (314)
Q Consensus       152 ~a~~~L~~L~~~~~--~----~~~i~~~~g~v~~Lv~ll~~---~~~~~~~~A~~~L--------~~L~~~~~~~~~~~-  213 (314)
                      -+++++.|+.....  +    ...++ ..++. .++..|..   .++++.+. +..|        -.++..  +++..+ 
T Consensus       288 v~l~~l~Nll~~~~~~~~~~~~~~~v-~~~~l-~~l~~L~~r~~~Dedl~ed-l~~L~~~L~~~~k~lTsf--d~Y~~Ev  362 (477)
T d1ho8a_         288 LCISIILQCCSTRVKQHKKVIKQLLL-LGNAL-PTVQSLSERKYSDEELRQD-ISNLKEILENEYQELTSF--DEYVAEL  362 (477)
T ss_dssp             HHHHHHHHTTSSSSTTHHHHHHHHHH-HHCHH-HHHHHHHSSCCSSHHHHHH-HHHHHHHHHHHHHTCCHH--HHHHHHH
T ss_pred             HHHHHHHHHhhhhhhhhhhHHHHHHH-Hcchh-HHHHHHhcCCCCCHHHHHH-HHHHHHHHHHHHHhcCcH--HHHHHHH
Confidence            99999999987532  1    23344 34444 45555644   34444322 2222        112221  123322 


Q ss_pred             ---------------HHHc----------CChHHHHHhhhc----------CCHHHHHHHHHHHHHhhcCC-chh--hcc
Q 021317          214 ---------------ILKE----------GAIPGLLRLTVE----------GTFEAQERARTLLDLLRDTP-QEK--RLS  255 (314)
Q Consensus       214 ---------------i~~~----------g~v~~Lv~ll~~----------~~~~~~~~A~~~L~~l~~~~-~~~--~~~  255 (314)
                                     ++.+          ..++.|++++..          .|+.+..-|+-=+..++++. .++  .-+
T Consensus       363 ~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~  442 (477)
T d1ho8a_         363 DSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDK  442 (477)
T ss_dssp             HHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred             hcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHH
Confidence                           2221          357788888862          34566666666777777544 432  224


Q ss_pred             hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Q 021317          256 SSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRS  291 (314)
Q Consensus       256 ~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s  291 (314)
                      .|+-+.+. .|.  .+.+++.+.+|-.+++.+..++
T Consensus       443 lg~K~~vM-~Lm--~h~d~~Vr~eAL~avQklm~~n  475 (477)
T d1ho8a_         443 TGGKADIM-ELL--NHSDSRVKYEALKATQAIIGYT  475 (477)
T ss_dssp             HSHHHHHH-HHT--SCSSHHHHHHHHHHHHHHHHHS
T ss_pred             cCcHHHHH-HHh--cCCCHHHHHHHHHHHHHHHHhc
Confidence            56666454 444  3456899999999999998764

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=3.8e-05  Score=76.79  Aligned_cols=229  Identities=11%  Similarity=0.112  Sum_probs=137.9

Q ss_pred             cHHHHHHhcCCCHHHHHHHHHHHHHhccCCC-ChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhh
Q 021317           51 IPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILD  129 (314)
Q Consensus        51 v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~-~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~  129 (314)
                      +..|++-+.++|+++|.-|+.-|.+.-..+. ....-.....++.++++|++.+++++..|+.+|..|...-.  ...+ 
T Consensus         5 ~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~--~~~~-   81 (1207)
T d1u6gc_           5 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVK--EYQV-   81 (1207)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSC--HHHH-
T ss_pred             HHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCc--HhhH-
Confidence            4567888899999999999988877433211 11111123478999999999999999999999999975422  1211 


Q ss_pred             cCCcHHHHHHhhccCCchHHHHHHHHHHHHhcC----Chhhh---hHHHhccCCHHHHHHHhhc-CCHHHHHHHHHHHHH
Q 021317          130 ATAVPPLINLLKDCKKYSKFAEKATALLEILSS----SEEGR---IAITNSDGGILTLVETVED-GSLVSTQHAVGALLS  201 (314)
Q Consensus       130 ~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~----~~~~~---~~i~~~~g~v~~Lv~ll~~-~~~~~~~~A~~~L~~  201 (314)
                      ...++.|+..+.+++.  ..+..+..+|..+..    .....   ..+.  ...++.+...+.. .+..++..|+.+|..
T Consensus        82 ~~l~~~L~~~l~~~~~--~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~--~~l~~~l~~~~~~~~~~~v~~~al~~l~~  157 (1207)
T d1u6gc_          82 ETIVDTLCTNMLSDKE--QLRDISSIGLKTVIGELPPASSGSALAANVC--KKITGRLTSAIAKQEDVSVQLEALDIMAD  157 (1207)
T ss_dssp             HHHHHHHHHHTTCSSS--HHHHHHHHHHHHHHHHCC-----CCTHHHHH--HHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCch--hhhHHHHHHHHHHHHhcccccccchhHHHHH--HHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence            2356667777766544  555555555554422    11111   1111  1233444444433 457888999999988


Q ss_pred             hhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhcCCCHHHHHHHHH
Q 021317          202 LCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAK  281 (314)
Q Consensus       202 L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~  281 (314)
                      +....+......  ....++.|+..+.+.++.+|+.|+.+|..+..+...... ...+..++..+....  +...++.+.
T Consensus       158 l~~~~g~~l~~~--~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~-~~~~~~ll~~l~~~~--~~~~~~~~~  232 (1207)
T d1u6gc_         158 MLSRQGGLLVNF--HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVF-VDLIEHLLSELSKND--SMSTTRTYI  232 (1207)
T ss_dssp             HHHHTCSSCTTT--HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----C-TTHHHHHHHHHHHTC--SSCSCTTHH
T ss_pred             HHHHhhHhhHHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHccCC--CHHHHHHHH
Confidence            865432110000  123567788888889999999999999999876654222 234555665555222  233445566


Q ss_pred             HHHHHHHHHH
Q 021317          282 RLLQDMVQRS  291 (314)
Q Consensus       282 ~~L~~l~~~s  291 (314)
                      .++..+.+..
T Consensus       233 ~~l~~l~~~~  242 (1207)
T d1u6gc_         233 QCIAAISRQA  242 (1207)
T ss_dssp             HHHHHHHHHS
T ss_pred             HHHHHHHHHc
Confidence            6676666543

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.82  E-value=0.00044  Score=65.58  Aligned_cols=259  Identities=10%  Similarity=-0.016  Sum_probs=156.3

Q ss_pred             cccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCC--CHHHHHHHHHHHHHhccCCCChh---------
Q 021317           17 ETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQ--NGTLRELAAAAILTLSAAAPNKP---------   84 (314)
Q Consensus        17 l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~La~~~~~~~---------   84 (314)
                      +.++|+.+|+.|-..|. +...+        ..+.+..|.+.+.+.  +..+|..|+..|.|.........         
T Consensus        14 ~~s~d~~~r~~Ae~~L~~~~~~~--------~~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~~~~~~~   85 (861)
T d2bpta1          14 ILSPDQNIRLTSETQLKKLSNDN--------FLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWI   85 (861)
T ss_dssp             HHCSSHHHHHHHHHHHHHHHHHC--------HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHH
T ss_pred             hcCCCHHHHHHHHHHHHHHHhcC--------chHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhhHHhhhH
Confidence            46788999999988887 33221        124566778888654  57788888888888654321100         


Q ss_pred             -HHh---hcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC--CCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHH
Q 021317           85 -AIA---ASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCK--ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLE  158 (314)
Q Consensus        85 -~i~---~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~  158 (314)
                       .+-   ....-..+++.+.++++.++..++.++..++..+  .++.    ...++.|++.+.+.++ ...+..++.++.
T Consensus        86 ~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~w----peli~~L~~~~~s~~~-~~~~~~al~~l~  160 (861)
T d2bpta1          86 TQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAW----PELMKIMVDNTGAEQP-ENVKRASLLALG  160 (861)
T ss_dssp             HHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCC----HHHHHHHHHHTSTTSC-HHHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCch----HHHHHHHHHHhcCCCc-HHHHHHHHHHHH
Confidence             000   0123356777888899999999999999887432  1111    1245566666666443 356677888888


Q ss_pred             HhcCChhhh-hHHHh-ccCCHHHHHHHhh--cCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHH
Q 021317          159 ILSSSEEGR-IAITN-SDGGILTLVETVE--DGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEA  234 (314)
Q Consensus       159 ~L~~~~~~~-~~i~~-~~g~v~~Lv~ll~--~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~  234 (314)
                      .++...+.. ..+.. -...+..++..+.  +.+..++..|+.++.++.....+...........++.|...+.+.++.+
T Consensus       161 ~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  240 (861)
T d2bpta1         161 YMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEV  240 (861)
T ss_dssp             HHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHH
Confidence            887543222 11110 0113344444443  3457899999999999876653221112222345677888888999999


Q ss_pred             HHHHHHHHHHhhcCCchhhcc--hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Q 021317          235 QERARTLLDLLRDTPQEKRLS--SSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR  290 (314)
Q Consensus       235 ~~~A~~~L~~l~~~~~~~~~~--~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~  290 (314)
                      +..+..++..+..........  ...+..+....  ..+..+..+..|...+..+...
T Consensus       241 ~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~--~~~~~~~v~~~~~~~l~~l~~~  296 (861)
T d2bpta1         241 QAAAFGCLCKIMSKYYTFMKPYMEQALYALTIAT--MKSPNDKVASMTVEFWSTICEE  296 (861)
T ss_dssp             HHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHH--TTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCccHHHHHHHHHHHHHHHHH
Confidence            999999999987644332211  11222222222  1344577888888888877643

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=0.00035  Score=67.69  Aligned_cols=229  Identities=13%  Similarity=0.064  Sum_probs=144.5

Q ss_pred             HHHHHHHHHHHHHhccC--CCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC-CCCchhhhhcCCcHHHHHH
Q 021317           63 GTLRELAAAAILTLSAA--APNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINL  139 (314)
Q Consensus        63 ~~~~~~a~~~L~~La~~--~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~l  139 (314)
                      .+....+..++..+...  ......+.....++.+...+.+.++.++..|..++..++.. ...-.... ...++.+...
T Consensus       636 ~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l-~~~~~~l~~~  714 (888)
T d1qbkb_         636 KDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCI-ADFMPILGTN  714 (888)
T ss_dssp             THHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHH
Confidence            33444444555555431  22333344456778888889999999999999999998843 22211111 1255666666


Q ss_pred             hhccCCchHHHHHHHHHHHHhcCCh-hhhhHHHhccCCHHHHHHHhhcCC--HHHHHHHHHHHHHhhccCcHHHHHHHHH
Q 021317          140 LKDCKKYSKFAEKATALLEILSSSE-EGRIAITNSDGGILTLVETVEDGS--LVSTQHAVGALLSLCQSCRDKYRQLILK  216 (314)
Q Consensus       140 L~~~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~~g~v~~Lv~ll~~~~--~~~~~~A~~~L~~L~~~~~~~~~~~i~~  216 (314)
                      +.+..  ..+...+++++..++..- +.-...+  ...++.|+..+.+.+  ..++++++.+|+-|+...++.....+  
T Consensus       715 L~~~~--~~v~~~a~~~ig~ia~~~~~~~~py~--~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l--  788 (888)
T d1qbkb_         715 LNPEF--ISVCNNATWAIGEISIQMGIEMQPYI--PMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPML--  788 (888)
T ss_dssp             CCGGG--HHHHHHHHHHHHHHHHHTGGGGGGGS--HHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGG--
T ss_pred             hCcCC--HHHHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhhH--
Confidence            65543  367788888888776542 2212222  247788999997643  66899999999999887753221111  


Q ss_pred             cCChHHHHHhhhc-CCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 021317          217 EGAIPGLLRLTVE-GTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELS  295 (314)
Q Consensus       217 ~g~v~~Lv~ll~~-~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~~~~  295 (314)
                      ..+++.++..+.. .+.+.++.|..-+..+-..++....  .-+...+..+..+.+..++.++....+|..+.+...+.+
T Consensus       789 ~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p~~~~--~~l~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  866 (888)
T d1qbkb_         789 QQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVI--QDFIFFCDAVASWINPKDDLRDMFCKILHGFKNQVGDEN  866 (888)
T ss_dssp             GGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCGGGTG--GGHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHCcHHHH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHcCcHh
Confidence            3467777776655 5677788888777776554443222  223345555665655668889999999999987665555


Q ss_pred             HHHHH
Q 021317          296 MTRIQ  300 (314)
Q Consensus       296 ~~~~~  300 (314)
                      +..+.
T Consensus       867 w~~~~  871 (888)
T d1qbkb_         867 WRRFS  871 (888)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55543

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.68  E-value=0.0019  Score=60.97  Aligned_cols=265  Identities=15%  Similarity=0.095  Sum_probs=153.0

Q ss_pred             ccCCHHHHHHHHHHhH-hhccCchhHH-HHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC-C-ChhHHhhcCcHH
Q 021317           18 TYFEGYARRLNLMGPL-WQLSKTRNKV-KIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA-P-NKPAIAASGAAP   93 (314)
Q Consensus        18 ~~~~~~~~~~a~~al~-l~~~~~~~~~-~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~-~~~~i~~~g~l~   93 (314)
                      ...+..++..++.++. .....+.+-. .......++.+...+.+++++++..+..++..++... + ....+.  ..+.
T Consensus       191 ~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~--~~l~  268 (861)
T d2bpta1         191 TETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYME--QALY  268 (861)
T ss_dssp             TCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHH--HTHH
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence            3456788888888887 4433322211 1112334567788888999999999999999987631 1 111111  1233


Q ss_pred             H-HHHHhccCCHHHHHHHHHHHHHhcCCCC--------------Cchhhhh---cCCcHHHHHHhhccC-----CchHHH
Q 021317           94 L-LVQILHSGSVQGRVDAVTALHYLSTCKE--------------NSSPILD---ATAVPPLINLLKDCK-----KYSKFA  150 (314)
Q Consensus        94 ~-Lv~lL~~~~~~~~~~a~~~L~nLs~~~~--------------~~~~i~~---~g~i~~Lv~lL~~~~-----~~~~~~  150 (314)
                      . +....++.++.++..++..+..++....              ....+..   ...++.+...+....     .+....
T Consensus       269 ~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~  348 (861)
T d2bpta1         269 ALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVS  348 (861)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHH
T ss_pred             HHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHH
Confidence            3 3344566788999999888877764211              0000110   123444555554321     112344


Q ss_pred             HHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcC
Q 021317          151 EKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEG  230 (314)
Q Consensus       151 ~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~  230 (314)
                      ..+..++..++......  +.  .-..+.+...+.+.+...++.+..++..++............ ...++.++..+.+.
T Consensus       349 ~~~~~~l~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l-~~~l~~l~~~l~d~  423 (861)
T d2bpta1         349 MSAGACLQLFAQNCGNH--IL--EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQ  423 (861)
T ss_dssp             HHHHHHHHHHHHHHGGG--GH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCS
T ss_pred             HHHHHHHHHHHhhcchh--hh--hhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHH-HHHHHHHHHHhcCc
Confidence            55555565554432211  11  012334444556677888999999999998765432222222 34688889999999


Q ss_pred             CHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q 021317          231 TFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQ  289 (314)
Q Consensus       231 ~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~  289 (314)
                      ++.++..+.+++..++..-..........+.++..+....+...+....+...+..+..
T Consensus       424 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~l~~  482 (861)
T d2bpta1         424 SLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVE  482 (861)
T ss_dssp             CHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred             chhhhhHHHHHHHHHHHHhchhhhhHHhhhhhhHHHHhccccChHHHHHHHHHHHHHHH
Confidence            99999999999999876543322233334444444443334456667777777666654

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.013  Score=55.31  Aligned_cols=257  Identities=11%  Similarity=0.046  Sum_probs=151.3

Q ss_pred             cccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCC--CHHHHHHHHHHHHHhccCC-CC-hhH-------
Q 021317           17 ETYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQ--NGTLRELAAAAILTLSAAA-PN-KPA-------   85 (314)
Q Consensus        17 l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~La~~~-~~-~~~-------   85 (314)
                      ..++|.+.++.|-..|..+..+  +     -.|.+..|.+.+.+.  +..+|..|+..|.|.-... .. +..       
T Consensus        10 ~~s~d~~~r~~Ae~~L~~~~~~--~-----~~~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~~~~~~~   82 (876)
T d1qgra_          10 TVSPDRLELEAAQKFLERAAVE--N-----LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLA   82 (876)
T ss_dssp             GGCSCHHHHHHHHHHHHHHHHH--H-----HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHT
T ss_pred             HhCcCHHHHHHHHHHHHHHHhc--C-----hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchhhhhhccccc
Confidence            3467888888888887632221  0     134566778877554  5778999999998855321 11 000       


Q ss_pred             H---hhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC--CCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHh
Q 021317           86 I---AASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCK--ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEIL  160 (314)
Q Consensus        86 i---~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L  160 (314)
                      +   .....-..+++.+.+++. .+..++.++..++..+  .+..    .+.++.|++.+.+++....++..++.++..+
T Consensus        83 i~~~~k~~ik~~ll~~l~~~~~-~~~~~a~~i~~i~~~~~p~~~W----peli~~L~~~l~~~~~~~~~~~~~l~~l~~i  157 (876)
T d1qgra_          83 IDANARREVKNYVLHTLGTETY-RPSSASQCVAGIACAEIPVNQW----PELIPQLVANVTNPNSTEHMKESTLEAIGYI  157 (876)
T ss_dssp             SCHHHHHHHHHHHHHHTTTCCS-SSCHHHHHHHHHHHHHGGGTCC----TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHCCcccc----HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHH
Confidence            0   011233567777776654 4445667777776432  1111    3577888888877655556777888888877


Q ss_pred             cCCh--hhhhHHHhccCCHHHHHHHhhcC--CHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHH
Q 021317          161 SSSE--EGRIAITNSDGGILTLVETVEDG--SLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQE  236 (314)
Q Consensus       161 ~~~~--~~~~~i~~~~g~v~~Lv~ll~~~--~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~  236 (314)
                      +..-  +.-....  ...++.++..+.+.  +..++..|+.++.+.........-......-.++.+...+.+.++.++.
T Consensus       158 ~~~~~~~~~~~~~--~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~  235 (876)
T d1qgra_         158 CQDIDPEQLQDKS--NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRV  235 (876)
T ss_dssp             HHHSCHHHHGGGH--HHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred             HHHCCHHHHHHHH--HHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence            6431  1111111  34677788877543  4678899999988876554221111111223456677778888999999


Q ss_pred             HHHHHHHHhhcCCchhh---cchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Q 021317          237 RARTLLDLLRDTPQEKR---LSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR  290 (314)
Q Consensus       237 ~A~~~L~~l~~~~~~~~---~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~  290 (314)
                      .+..++..+.....+..   +.......+....   .+..+..+..+...+..+...
T Consensus       236 ~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~  289 (876)
T d1qgra_         236 AALQNLVKIMSLYYQYMETYMGPALFAITIEAM---KSDIDEVALQGIEFWSNVCDE  289 (876)
T ss_dssp             HHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHH---TCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh---ccccHHHHHHHHHHHHHHHHH
Confidence            99999998876554321   1112222221112   233466677777777666643

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.09  E-value=0.00036  Score=56.74  Aligned_cols=48  Identities=13%  Similarity=0.212  Sum_probs=30.1

Q ss_pred             cCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHH
Q 021317           48 AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVT  112 (314)
Q Consensus        48 ~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~  112 (314)
                      .-.++.|..+++++++.++..|+..|   .              .+.|..++.+++..++..++.
T Consensus        65 ~a~~~~L~~Ll~D~d~~VR~~AA~~L---p--------------~~~L~~L~~D~d~~VR~~aa~  112 (233)
T d1lrva_          65 YSPVEALTPLIRDSDEVVRRAVAYRL---P--------------REQLSALMFDEDREVRITVAD  112 (233)
T ss_dssp             TSCGGGGGGGTTCSSHHHHHHHHTTS---C--------------SGGGGGTTTCSCHHHHHHHHH
T ss_pred             cCCHHHHHHHhcCCCHHHHHHHHHHc---C--------------HHHHHHHhcCCChhHHHHHHh
Confidence            34466777777888888887765432   1              234556666777777766654

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.84  E-value=0.00055  Score=55.61  Aligned_cols=131  Identities=15%  Similarity=0.097  Sum_probs=69.9

Q ss_pred             HHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHH
Q 021317           56 ELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPP  135 (314)
Q Consensus        56 ~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~  135 (314)
                      .+|.++..+++..|+.                 .-.+..|..+++++++.++..++..|   .              .+.
T Consensus        49 ~~l~~p~~e~Ra~Aa~-----------------~a~~~~L~~Ll~D~d~~VR~~AA~~L---p--------------~~~   94 (233)
T d1lrva_          49 QYLADPFWERRAIAVR-----------------YSPVEALTPLIRDSDEVVRRAVAYRL---P--------------REQ   94 (233)
T ss_dssp             GGTTCSSHHHHHHHHT-----------------TSCGGGGGGGTTCSSHHHHHHHHTTS---C--------------SGG
T ss_pred             HHhcCCcHHHHHHHHh-----------------cCCHHHHHHHhcCCCHHHHHHHHHHc---C--------------HHH
Confidence            3566677777754431                 23356788899999999999997543   1              234


Q ss_pred             HHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHH-----HHHhhccCcHHH
Q 021317          136 LINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGA-----LLSLCQSCRDKY  210 (314)
Q Consensus       136 Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~-----L~~L~~~~~~~~  210 (314)
                      |..++.+.+  ..++..+...   +.               .+.|..++.+.+..++..++..     |..+..+...++
T Consensus        95 L~~L~~D~d--~~VR~~aa~~---l~---------------~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~~D~d~~V  154 (233)
T d1lrva_          95 LSALMFDED--REVRITVADR---LP---------------LEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQV  154 (233)
T ss_dssp             GGGTTTCSC--HHHHHHHHHH---SC---------------TGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHH
T ss_pred             HHHHhcCCC--hhHHHHHHhc---cC---------------HHHHHHHhcCCCHHHHHHHHhccchhHHHHHhcCCCHHH
Confidence            555555543  2555443322   11               1234444445555555444432     222222222344


Q ss_pred             HHHHHHcCChHHHHHhhhcCCHHHHHHHHH
Q 021317          211 RQLILKEGAIPGLLRLTVEGTFEAQERART  240 (314)
Q Consensus       211 ~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~  240 (314)
                      |..+...-+.+.|..++++.++.++..++.
T Consensus       155 R~~aA~~~~~~~L~~l~~D~d~~VR~~aa~  184 (233)
T d1lrva_         155 RKLVAKRLPEESLGLMTQDPEPEVRRIVAS  184 (233)
T ss_dssp             HHHHHHHSCGGGGGGSTTCSSHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHccCCCHHHHHHHHH
Confidence            555444444556666666666666665554

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.49  E-value=0.53  Score=38.87  Aligned_cols=201  Identities=13%  Similarity=0.103  Sum_probs=143.4

Q ss_pred             HHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC-CCCchhhhhc-CCcHHHHHHhhccCCchHHHHHHHHHHHHhcC
Q 021317           85 AIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC-KENSSPILDA-TAVPPLINLLKDCKKYSKFAEKATALLEILSS  162 (314)
Q Consensus        85 ~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~-g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~  162 (314)
                      .+...+.+..|+.-|..=+-+.|..+..+..++-.. .+.+...++. -.=+.++..|-.|.+.+++.-.+..+|.....
T Consensus        64 e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~~eiAl~~G~mLREcik  143 (330)
T d1upka_          64 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIR  143 (330)
T ss_dssp             HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHT
T ss_pred             HHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcCCcchhhhhhHHHHHHHh
Confidence            345678899999999999999999999999999854 3455333331 01133444443444445667788888999999


Q ss_pred             ChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcC---ChHHHHHhhhcCCHHHHHHHH
Q 021317          163 SEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEG---AIPGLLRLTVEGTFEAQERAR  239 (314)
Q Consensus       163 ~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g---~v~~Lv~ll~~~~~~~~~~A~  239 (314)
                      +....+.+. ....+..+...+..++=++...|..++..+-...+ .....+...+   .+...-+++.+++--+++.+.
T Consensus       144 ~e~lak~iL-~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk-~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSl  221 (330)
T d1upka_         144 HEPLAKIIL-WSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHK-LLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL  221 (330)
T ss_dssp             SHHHHHHHH-HSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSH-HHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             hHHHHHHHH-ccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCH-HHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHH
Confidence            999888888 67889999999999999999999999988766554 4445555433   566777789999999999999


Q ss_pred             HHHHHhhcCCch--h---hcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q 021317          240 TLLDLLRDTPQE--K---RLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQ  289 (314)
Q Consensus       240 ~~L~~l~~~~~~--~---~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~  289 (314)
                      .+|..+--.+..  -   .+...---.++..|.  .+.+...+-.|=-+.+-+++
T Consensus       222 KLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LL--rd~sk~Iq~EAFhVFKvFVA  274 (330)
T d1upka_         222 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLL--RDKSRNIQFEAFHVFKVFVA  274 (330)
T ss_dssp             HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHT--TCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHh--cCchhhHHHHhhhHhhhhhc
Confidence            999998644422  2   222222222333333  57778889999999999886

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=95.06  E-value=0.25  Score=41.57  Aligned_cols=198  Identities=14%  Similarity=0.051  Sum_probs=115.3

Q ss_pred             cHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhcc----CCHHHHHHHHHHHHHhcC----CCC
Q 021317           51 IPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHS----GSVQGRVDAVTALHYLST----CKE  122 (314)
Q Consensus        51 v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~----~~~~~~~~a~~~L~nLs~----~~~  122 (314)
                      +..+.+++.++..... .|...+..++....-     ....+..+..++.+    .++.++..+.-++++|..    ..+
T Consensus        90 ~~~i~~~I~~~~ls~~-ea~~~l~~l~~~~~P-----t~~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~  163 (336)
T d1lsha1          90 LLFLKRTLASEQLTSA-EATQIVASTLSNQQA-----TRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTV  163 (336)
T ss_dssp             HHHHHHHHHTTCSCHH-HHHHHHHHHHHTCCC-----CHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHcCCCCHH-HHHHHHHHHhccCCC-----CHHHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCC
Confidence            3445566655432222 344555556543221     12234566677664    467788888877777763    222


Q ss_pred             CchhhhhcCCcHHHHHHhh----ccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhc-------CCHHH
Q 021317          123 NSSPILDATAVPPLINLLK----DCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVED-------GSLVS  191 (314)
Q Consensus       123 ~~~~i~~~g~i~~Lv~lL~----~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~-------~~~~~  191 (314)
                      .+.    ...++.+.+.+.    .++  .+-...++.+|+|+..           .+.++.|..++.+       .+..+
T Consensus       164 ~~~----~~~~~~l~~~l~~~~~~~~--~~~~~~~LkaLGN~g~-----------p~~i~~l~~~l~~~~~~~~~~~~~v  226 (336)
T d1lsha1         164 SCP----DELLQPLHDLLSQSSDRAK--EEEIVLALKALGNAGQ-----------PNSIKKIQRFLPGQGKSLDEYSTRV  226 (336)
T ss_dssp             SCC----GGGTHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTC-----------GGGHHHHHTTSTTSSSCCCCSCHHH
T ss_pred             CCc----HHHHHHHHHHHHHhhcccc--hHHHHHHHHHHhccCC-----------HhHHHHHHHHhcccccccccccHHH
Confidence            221    123445555543    322  2334567888888653           2356667666643       24679


Q ss_pred             HHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhc--CCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhc
Q 021317          192 TQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE--GTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAAR  269 (314)
Q Consensus       192 ~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~--~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~  269 (314)
                      +..|+.+|..++...+...         .+.+..+..+  .++++|-.|..+|-.+  .+.     ...+..+...+.  
T Consensus       227 R~aAi~Alr~~~~~~p~~v---------~~~l~~i~~n~~e~~EvRiaA~~~lm~t--~P~-----~~~l~~i~~~l~--  288 (336)
T d1lsha1         227 QAEAIMALRNIAKRDPRKV---------QEIVLPIFLNVAIKSELRIRSCIVFFES--KPS-----VALVSMVAVRLR--  288 (336)
T ss_dssp             HHHHHHTTTTGGGTCHHHH---------HHHHHHHHHCTTSCHHHHHHHHHHHHHT--CCC-----HHHHHHHHHHHT--
T ss_pred             HHHHHHHHHHhhhcCcHHH---------HHHHHHHHcCCCCChHHHHHHHHHHHhc--CCC-----HHHHHHHHHHHH--
Confidence            9999999999987765432         3344454443  4688888887776443  232     334455555454  


Q ss_pred             CCCHHHHHHHHHHHHHHHHH
Q 021317          270 VDGADKAAETAKRLLQDMVQ  289 (314)
Q Consensus       270 ~~~~~~~~~~A~~~L~~l~~  289 (314)
                      .+.+...+....+.|+++.+
T Consensus       289 ~E~~~QV~sfv~S~l~~la~  308 (336)
T d1lsha1         289 REPNLQVASFVYSQMRSLSR  308 (336)
T ss_dssp             TCSCHHHHHHHHHHHHHHTT
T ss_pred             hCcHHHHHHHHHHHHHHHHh
Confidence            45567888888888888886

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.54  E-value=0.93  Score=37.97  Aligned_cols=166  Identities=13%  Similarity=0.103  Sum_probs=108.2

Q ss_pred             HHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhc----C-----C--CHHHHHHHHHHHHHhccCCCChhHH-hhc
Q 021317           23 YARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLK----F-----Q--NGTLRELAAAAILTLSAAAPNKPAI-AAS   89 (314)
Q Consensus        23 ~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~----~-----~--~~~~~~~a~~~L~~La~~~~~~~~i-~~~   89 (314)
                      +..-..+..|. -+...+-.+-.-...+|+..|+.+|.    .     +  +...+..++.+|..+..+..+...+ ..+
T Consensus        18 ~~~~~~L~sL~v~Lrt~~~sWv~~F~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~~~G~~~vl~~~   97 (343)
T d2bnxa1          18 MHLLSCLESLRVSLNNNPVSWVQTFGAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETE   97 (343)
T ss_dssp             HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSS
T ss_pred             cHHHHHHHHHHHHHhcCCchHHHHHHhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhccHHHHHHHHcCh
Confidence            33344566666 44444554433235677888888772    1     1  2456677888999888776655554 477


Q ss_pred             CcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC---Cchh----------hhhcCCcHHHHHHhhccCCchHHHHHHHHH
Q 021317           90 GAAPLLVQILHSGSVQGRVDAVTALHYLSTCKE---NSSP----------ILDATAVPPLINLLKDCKKYSKFAEKATAL  156 (314)
Q Consensus        90 g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~---~~~~----------i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~  156 (314)
                      .++..++..|.++++.++..++..|..++..++   +...          ..+.+-..++++.++.+.. .++...++..
T Consensus        98 ~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~-~ey~~a~m~l  176 (343)
T d2bnxa1          98 EGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTS-IALKVGCLQL  176 (343)
T ss_dssp             SHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSC-HHHHHHHHHH
T ss_pred             HHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhcccc-HHHHHHHHHH
Confidence            899999999999999999999999999985322   2222          2234677888888877543 3677778887


Q ss_pred             HHHhcCChhh-------hhHHHhccCCHHHHHHHhhc-CCHHH
Q 021317          157 LEILSSSEEG-------RIAITNSDGGILTLVETVED-GSLVS  191 (314)
Q Consensus       157 L~~L~~~~~~-------~~~i~~~~g~v~~Lv~ll~~-~~~~~  191 (314)
                      +-.+....+.       |..+. ..| +..++.-|+. +++.+
T Consensus       177 IN~li~~~~dl~~R~~lR~E~~-~~G-l~~il~~l~~~~~~~L  217 (343)
T d2bnxa1         177 INALITPAEELDFRVHIRSELM-RLG-LHQVLQELREIENEDM  217 (343)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHH-HTT-HHHHHHHHTTCCCHHH
T ss_pred             HHHHHcCcccHHHHHHHHHHHH-HCC-hHHHHHHHHccCChHH
Confidence            7777666332       45555 455 4555666654 34443

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.44  E-value=3.9  Score=33.49  Aligned_cols=203  Identities=11%  Similarity=0.054  Sum_probs=142.8

Q ss_pred             HHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC-CCh----hHHh-hcCcHHHHHHHhccCCHHHHHHHHHHHHHh
Q 021317           44 KIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA-PNK----PAIA-ASGAAPLLVQILHSGSVQGRVDAVTALHYL  117 (314)
Q Consensus        44 ~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~~~----~~i~-~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nL  117 (314)
                      .+...+.+..|+..|..-+-+.|..++.+..++-... +++    ..+. ....+..|+..-+  ++++-..+-..|+..
T Consensus        64 e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye--~~eiAl~~G~mLREc  141 (330)
T d1upka_          64 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLREC  141 (330)
T ss_dssp             HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHHH
T ss_pred             HHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcC--CcchhhhhhHHHHHH
Confidence            3445688888888888888899999999999987753 333    2233 2344445554443  444555677778888


Q ss_pred             cCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHh-cCChhhhhHHHhc--cCCHHHHHHHhhcCCHHHHHH
Q 021317          118 STCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEIL-SSSEEGRIAITNS--DGGILTLVETVEDGSLVSTQH  194 (314)
Q Consensus       118 s~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L-~~~~~~~~~i~~~--~g~v~~Lv~ll~~~~~~~~~~  194 (314)
                      ...+.....+....-+..+.+.++.+  ..++...|..++..+ ..++.........  ...+..+-.+|.+++--++..
T Consensus       142 ik~e~lak~iL~s~~f~~fF~yv~~~--~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRq  219 (330)
T d1upka_         142 IRHEPLAKIILWSEQFYDFFRYVEMS--TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQ  219 (330)
T ss_dssp             HTSHHHHHHHHHSGGGGHHHHHTTCS--SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHH
T ss_pred             HhhHHHHHHHHccHHHHHHHHHHcCC--chHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHH
Confidence            88888888888877788888888775  347777888888765 4555444444311  123556778888899889999


Q ss_pred             HHHHHHHhhccCcH-HHHHHHHH-cCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCc
Q 021317          195 AVGALLSLCQSCRD-KYRQLILK-EGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQ  250 (314)
Q Consensus       195 A~~~L~~L~~~~~~-~~~~~i~~-~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~  250 (314)
                      ++..|+.+-.+..+ ......++ ..-+..++.++++.+..+|-.|.-+..-+...+.
T Consensus       220 SlKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpn  277 (330)
T d1upka_         220 SLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPN  277 (330)
T ss_dssp             HHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCC
Confidence            99999998765433 22222232 3458888999999999999999999988877664

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.38  E-value=1.3  Score=37.11  Aligned_cols=103  Identities=16%  Similarity=0.182  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCc-HHHHHHH----------HH
Q 021317          148 KFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCR-DKYRQLI----------LK  216 (314)
Q Consensus       148 ~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~-~~~~~~i----------~~  216 (314)
                      .....++.+|..+..+..+...++.+.+++..+...+.+....++..|+..|..+|.... +++-..+          .+
T Consensus        71 ~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e  150 (343)
T d2bnxa1          71 RNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDE  150 (343)
T ss_dssp             HHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcC
Confidence            455678999999999999988888788999999999999999999999999999985421 1112222          22


Q ss_pred             cCChHHHHHhhhcC-CHHHHHHHHHHHHHhhcCCc
Q 021317          217 EGAIPGLLRLTVEG-TFEAQERARTLLDLLRDTPQ  250 (314)
Q Consensus       217 ~g~v~~Lv~ll~~~-~~~~~~~A~~~L~~l~~~~~  250 (314)
                      .+-...+++.++.+ +...+..+...+..+..+.+
T Consensus       151 ~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~  185 (343)
T d2bnxa1         151 VERFQPLLDGLKSGTSIALKVGCLQLINALITPAE  185 (343)
T ss_dssp             SCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCS
T ss_pred             CCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcc
Confidence            46678888877654 56777777778888877664

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=87.90  E-value=6.2  Score=32.46  Aligned_cols=159  Identities=9%  Similarity=0.011  Sum_probs=92.9

Q ss_pred             CHHHHHHHHHHHHHhcc----C-CCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHH
Q 021317           62 NGTLRELAAAAILTLSA----A-APNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPL  136 (314)
Q Consensus        62 ~~~~~~~a~~~L~~La~----~-~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L  136 (314)
                      ++.++..+.-++++|..    . +.+...+. ......+.+....++.+-+..++.+|+|+-..          +.++.|
T Consensus       140 ~~~l~~~a~La~gslv~~~c~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~p----------~~i~~l  208 (336)
T d1lsha1         140 RPILRKTAVLGYGSLVFRYCANTVSCPDELL-QPLHDLLSQSSDRAKEEEIVLALKALGNAGQP----------NSIKKI  208 (336)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCSSCCGGGT-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG----------GGHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHhcCCCCCcHHHH-HHHHHHHHHhhcccchHHHHHHHHHHhccCCH----------hHHHHH
Confidence            46666677777777664    2 22222221 11222333444566777788889999998642          356777


Q ss_pred             HHHhhcc-----CCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhc--CCHHHHHHHHHHHHHhhccCcHH
Q 021317          137 INLLKDC-----KKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVED--GSLVSTQHAVGALLSLCQSCRDK  209 (314)
Q Consensus       137 v~lL~~~-----~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~--~~~~~~~~A~~~L~~L~~~~~~~  209 (314)
                      ..++.+.     .....++..|..+|..++......        +.+.+..++.+  .+.++|-.|...|.. |.-+ ..
T Consensus       209 ~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~--------v~~~l~~i~~n~~e~~EvRiaA~~~lm~-t~P~-~~  278 (336)
T d1lsha1         209 QRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK--------VQEIVLPIFLNVAIKSELRIRSCIVFFE-SKPS-VA  278 (336)
T ss_dssp             HTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH--------HHHHHHHHHHCTTSCHHHHHHHHHHHHH-TCCC-HH
T ss_pred             HHHhcccccccccccHHHHHHHHHHHHHhhhcCcHH--------HHHHHHHHHcCCCCChHHHHHHHHHHHh-cCCC-HH
Confidence            7777542     122367777778777765543211        22355566554  457888888877755 3222 11


Q ss_pred             HHHHHHHcCChHHHHHhhhc-CCHHHHHHHHHHHHHhhcCCc
Q 021317          210 YRQLILKEGAIPGLLRLTVE-GTFEAQERARTLLDLLRDTPQ  250 (314)
Q Consensus       210 ~~~~i~~~g~v~~Lv~ll~~-~~~~~~~~A~~~L~~l~~~~~  250 (314)
                               .+..+...+.. .+..+.......|.+++++..
T Consensus       279 ---------~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s~~  311 (336)
T d1lsha1         279 ---------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSN  311 (336)
T ss_dssp             ---------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCS
T ss_pred             ---------HHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCC
Confidence                     35556665543 567777777778889887653

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.45  E-value=2.3  Score=39.73  Aligned_cols=136  Identities=10%  Similarity=0.005  Sum_probs=94.6

Q ss_pred             HHHHHHHhcc-CCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCCh------
Q 021317           92 APLLVQILHS-GSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE------  164 (314)
Q Consensus        92 l~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~------  164 (314)
                      ++.+.++|.. .++..++.|=.-|..+..++         |....|++++.+.+....++..|.-.+.|.....      
T Consensus         4 ~~~l~~ll~~s~~~~~~k~Ae~~L~~~~~~p---------~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~~   74 (959)
T d1wa5c_           4 LETVAKFLAESVIASTAKTSERNLRQLETQD---------GFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENG   74 (959)
T ss_dssp             HHHHHHHHHHTTSGGGHHHHHHHHHHHHTST---------THHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSS
T ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHHHHcCC---------CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence            3456666654 47778888888888876654         6788889988876655577777777777755321      


Q ss_pred             ------hhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccC-cHHHHHHHHHcCChHHHHHhhhcCCHHHHHH
Q 021317          165 ------EGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSC-RDKYRQLILKEGAIPGLLRLTVEGTFEAQER  237 (314)
Q Consensus       165 ------~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~-~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~  237 (314)
                            +.|..+-      ..++..+.+.+..++...+.++..++..+ |++.      .+.++.|++.+.++++..+..
T Consensus        75 ~~~i~~e~k~~Ik------~~ll~~l~~~~~~ir~~l~~~i~~I~~~d~p~~W------p~ll~~l~~~l~s~~~~~~~~  142 (959)
T d1wa5c_          75 NHLLPANNVELIK------KEIVPLMISLPNNLQVQIGEAISSIADSDFPDRW------PTLLSDLASRLSNDDMVTNKG  142 (959)
T ss_dssp             CBSSCHHHHHHHH------HHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTC------TTHHHHHHTTCCSSCTTHHHH
T ss_pred             cCCCCHHHHHHHH------HHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcccc------HHHHHHHHHHhCCCCHHHHHH
Confidence                  1222222      35666676778888888888888887532 1110      357888888888888888889


Q ss_pred             HHHHHHHhhcC
Q 021317          238 ARTLLDLLRDT  248 (314)
Q Consensus       238 A~~~L~~l~~~  248 (314)
                      +..+|..+++.
T Consensus       143 ~L~~l~~i~k~  153 (959)
T d1wa5c_         143 VLTVAHSIFKR  153 (959)
T ss_dssp             HHHHHHHHHGG
T ss_pred             HHHHHHHHHHH
Confidence            99999888753