Citrus Sinensis ID: 021396

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310---
Protein Sequence
MQTLQRIVSKKSMTKTIRCYPMTPSILIRALSTKPPEDGGEEWNDAWETAWLPEDLTPKNRAPWEEDVNFGSEEIVLSSDVDAETKAFVEDMNDNWDERRKNNNNNEGKHHVNSSVGLGAEGSGDKLYSLESIKKDYRLKKQRIHAALWLKEIEKQEEAKLDTHGPHHHHHDIDRLLDTCSEIFDSTNDDLDNAKIPSSSEFKNKPDGWETTAKEQDGNVWEMSQREEDILLQEFDRRIAYCKFQIASFIKTHIFSRRRPIDGWKYMIEEIGPNARKGKGSVSRLPGLSDPSTQPFKEDRTPIRGSLTPSRGR
Secondary Structure (PSIPRED)
ccHHHHHHHHcccccccccccccHHHHHHHccccccccccccccccHHccccccccccccccccccccccccHHHHccccccHHHHHHHHHHHHcHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHEEcccccccccccccccHHHHHcccccccccccccHcHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHcHHHHccccccccccccccccccEEcccccccccccccccEEEHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEccccccccccccEEcccccccccccccHcHHHHHccccccccc
Coil and Loop (DISEMBL)
MQTLQRIVSkksmtktircypmtpsILIRAlstkppedggeewndawetawlpedltpknrapweedvnfgseeivlssdvdaETKAFVEDMNdnwderrknnnnnegkhhvnssvglgaegsgdklysLESIKKDYRLKKQRIHAALWLKEIEKQEEakldthgphhhhhdiDRLLDTCSEIFdstnddldnakipsssefknkpdgwettakeqdgnvweMSQREEDILLQEFDRRIAYCKFQIASFIKThifsrrrpidgWKYMIEEigpnarkgkgsvsrlpglsdpstqpfkedrtpirgsltpsrgr
Flexible Loop (DISEMBL)
mqtlqrivskksmtktircypmtpsILIRALSTKPPEDGGEEWNDAWETAWLPEDLTPKNRAPWEEDVNFGSEEivlssdvdaeTKAFVEdmndnwderrknnnnnegkhhvnssvglgaegsgDKLYSLESIKKDYRLKKQRIHAALWLKEIEKQEEAKLDTHGPHHHHHDIDRLLDTCSEIFDSTNddldnakipsssefknkpdgwettakeqdgnvwemSQREEDILLQEFDRRIAYCKFQIasfikthifsrrrpIDGWKYMIEEIGpnarkgkgsvsrlpglsdpstqpfkedrtpirgsltpsrgr
Low Complexity Region (SEG)
MQTLQRIVSKKSMTKTIRCYPMTPSILIRALSTKPPEDGGEEWNDAWETAWLPEDLTPKNRAPWEEDVNFGSEEIVLSSDVDAETKAFVEDMndnwderrknnnnnegkhhvnSSVGLGAEGSGDKLYSLESIKKDYRLKKQRIHAALWLKEIEKQEEAKLDTHGPhhhhhDIDRLLDTCSEIFDSTNDDLDNAKIPSSSEFKNKPDGWETTAKEQDGNVWEMSQREEDILLQEFDRRIAYCKFQIASFIKTHIFSRRRPIDGWKYMIEEIGPNARKGKGSVSRLPGLSDPSTQPFKEDRTPIRGSLTPSRGR
Disordered region (IsUnstruct)
**************KTIRCYPMTPSILIRAL**********EWNDAWETAWLPEDL*******W***VNFG***IV***************************************************YSLESIKKDYRLKKQRIHAALWLKE***************************************************************************EDILLQEFDRRIAYCKFQIASFIKTHIFSRRRPIDGWKYMIEEI******************************************
Disordered Region (DISOPRED)
**********************************************WETAWLPED***************************AETKAFVEDMNDNWD********************************LESIKKDYRLKKQRIHAALWLKE*****************HHDIDRLLDTCSEIFDSTNDDLDNAKIPSSSEFKNKPDGWE**********WEMSQREEDILLQEFDRRIAYCKFQIAS*I*********PIDGWKYMIEE*******************************************
Disordered Region (DISEMBL)
MQTLQRIVSKKSMTKTIRCYPMTPSILIRALSTKPPEDGGEEWNDAWETAWLPEDLTPKNRAPWEEDVNFGSEEIVLSSDVDAETKAFVEDMNDNWDERRKNNNNNEGKHHVNSSVGLGAEGSGDKLYSLESIKKDYRLKKQRIHAALWLKEIEKQEEA*************IDRLLDTCSEIFDSTNDDLDNAKIPSSSEFKNKPDGWETTAKEQDGNVWEMSQREEDILLQEFDRRIAYCKFQIASFIKTHIFSRRRPIDGWKYMIEEIGPNAR***********LSDPSTQPFKEDRTPIRGSLTPSRGR
Disordered Region (DISPRO)
*QTLQRIVSKKSMTKTIRCYPMTPSILIRAL**********EWNDAWETAWLPEDLTP*N*******************DVDAETKAFVEDMNDNWDERR***********************GDKLYSLESIKKDYRLKKQRIHAALWLKEIEKQEEAKLD***PHHHHHDIDRLLDTCSEIFDSTNDDLDNAKIPSSSEFKNKPDGWETTAKEQDGNVWEMSQREEDILLQEFDRRIAYCKFQIASFIKTHIFSRRRPIDGWKYMIEEIGPNA*****SVSR*****************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQTLQRIVSKKSMTKTIRCYPMTPSILIRALSTKPPEDGGEEWNDAWETAWLPEDLTPKNRAPWEEDVNFGSEEIVLSSDVDAETKAFVEDMNDNWDERRKNNNNNEGKHHVNSSVGLGAEGSGDKLYSLESIKKDYRLKKQRIHAALWLKEIEKQEEAKLDTHGPHHHHHDIDRLLDTCSEIFDSTNDDLDNAKIPSSSEFKNKPDGWETTAKEQDGNVWEMSQREEDILLQEFDRRIAYCKFQIASFIKTHIFSRRRPIDGWKYMIEEIGPNARKGKGSVSRLPGLSDPSTQPFKEDRTPIRGSLTPSRGR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	313
225448079	299	PREDICTED: uncharacterized protein LOC10	0.942	0.986	0.668	1e-110
255562788	313	conserved hypothetical protein [Ricinus	0.961	0.961	0.634	1e-108
224134997	250	predicted protein [Populus trichocarpa]	0.798	1.0	0.727	1e-104
449452692	333	PREDICTED: uncharacterized protein LOC10	0.865	0.813	0.696	1e-101
357486783	299	Mucin-like protein [Medicago truncatula]	0.936	0.979	0.620	1e-101
15227059	314	mucin-related protein [Arabidopsis thali	0.964	0.961	0.637	1e-101
356497878	305	PREDICTED: uncharacterized protein LOC10	0.942	0.967	0.572	7e-96
297814590	316	hypothetical protein ARALYDRAFT_904548 [	0.907	0.898	0.647	9e-96
356499789	311	PREDICTED: uncharacterized protein LOC10	0.942	0.948	0.571	2e-92
226533264	316	uncharacterized protein LOC100276037 [Ze	0.926	0.917	0.525	1e-80

>gi|225448079|ref|XP_002273560.1| PREDICTED: uncharacterized protein LOC100256690 [Vitis vinifera]

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 212/317 (66%), Positives = 240/317 (75%), Gaps = 22/317 (6%)

Query: 1   MQTLQR--IVSKKSMTKTIRCYPMTPSILIRALSTKPPEDGGEEWNDAWETAWLPEDLTP 58
           MQTLQR  I ++    +T    P+   +  +  STK    G +EWN+AWE+AWLPEDL+ 
Sbjct: 1   MQTLQRLKIYNRLHAVRTTSFNPIGHHL--KTYSTKSKSAGDDEWNNAWESAWLPEDLSA 58

Query: 59  KNRAPWEEDVNFGSEE--IVLSSDVDAETKAFVEDMNDNWDERRKNNNNNEGKHHVNSSV 116
           KNRAPWE DVNF S E  IVL SDVDAETKAFVEDM +NW+ERRK     E K       
Sbjct: 59  KNRAPWETDVNFSSSESAIVLPSDVDAETKAFVEDMTENWNERRKGQQKQEEKR------ 112

Query: 117 GLGAEGSGDKLYSLESIKKDYRLKKQRIHAALWLKEIEKQEEAKLDTHGPHHHHHDIDRL 176
                   D LY+LE++KKDYRLKKQR+HA LW+KEIEKQEEAKL          DIDRL
Sbjct: 113 --------DSLYNLENMKKDYRLKKQRLHAGLWMKEIEKQEEAKLGDL-VAGGGDDIDRL 163

Query: 177 LDTCSEIFDSTNDDLDNAKIPSSSEFKNKPDGWETTAKEQDGNVWEMSQREEDILLQEFD 236
           LD+ SEIFD+ N+D +N+ IPSSSEFKNKPDGWET +K QDGN+WEMSQREEDILLQEFD
Sbjct: 164 LDSYSEIFDTGNNDFNNSNIPSSSEFKNKPDGWETISKAQDGNIWEMSQREEDILLQEFD 223

Query: 237 RRIAYCKFQIASFIKTHIFSRRRPIDGWKYMIEEIGPNARKGKGSVSRLPGLSDPSTQPF 296
           RRIAYCKFQIASFIKTHIFSRRRPIDGWKYMIEE+GPNARKGKGSVSRLP +SD STQPF
Sbjct: 224 RRIAYCKFQIASFIKTHIFSRRRPIDGWKYMIEELGPNARKGKGSVSRLPSISDASTQPF 283

Query: 297 KEDRTPIRGSLTPSRGR 313
           KE+RT   GSLT  +GR
Sbjct: 284 KEERT-TSGSLTSFKGR 299

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562788|ref|XP_002522399.1| conserved hypothetical protein [Ricinus communis] gi|223538284|gb|EEF39891.1| conserved hypothetical protein [Ricinus communis]

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 201/317 (63%), Positives = 239/317 (75%), Gaps = 16/317 (5%)

Query: 1   MQTLQRIVSKKSMTKTIRCYPMTPS-----ILIRALSTKPPEDGGEEWNDAWETAWLPED 55
           M  LQR+    ++ ++   Y  T +      L ++LS K  ++G + WNDAWETAWLPED
Sbjct: 1   MHCLQRLACT-TIKRSTPIYQFTKTYLNSKTLSKSLSAKATKNGDDGWNDAWETAWLPED 59

Query: 56  LTPKNRAPWEEDVNFGSEEIVLSSDVDAETKAFVEDMNDNWDERRKNNNNNEGKHHVNSS 115
           LT KNRAPWE DVNF +    LS + D ETKAFVE+MN+NW+ERRK   N+  +      
Sbjct: 60  LTAKNRAPWETDVNFPT--AGLSPEADTETKAFVEEMNENWNERRKMTKNHHQREEDKDK 117

Query: 116 VGLGAEG---SGDKLYSLESIKKDYRLKKQRIHAALWLKEIEKQEEAKLDTHGPHHHHHD 172
                +    +G +LYSLE++KKDYRLKKQRIHA LW KEIEKQ+EAKL          D
Sbjct: 118 DKEEKKKGGENGTELYSLENLKKDYRLKKQRIHAGLWTKEIEKQQEAKLGDSA-----DD 172

Query: 173 IDRLLDTCSEIFDSTNDDLDNAKIPSSSEFKNKPDGWETTAKEQDGNVWEMSQREEDILL 232
           IDRLLD+CSEIFD+ N+DL+N+++PSSSEFKNKPDGWETT+K QDGN+WEMSQREEDILL
Sbjct: 173 IDRLLDSCSEIFDTPNNDLENSRVPSSSEFKNKPDGWETTSKAQDGNIWEMSQREEDILL 232

Query: 233 QEFDRRIAYCKFQIASFIKTHIFSRRRPIDGWKYMIEEIGPNARKGKGSVSRLPGLSDPS 292
           QEFDRRIAY KFQIASFIKTHIFSRRRPIDGWKYMIEE+GPNARKGKGSVSR+P LSDP+
Sbjct: 233 QEFDRRIAYSKFQIASFIKTHIFSRRRPIDGWKYMIEELGPNARKGKGSVSRIPSLSDPA 292

Query: 293 TQPFKEDRTPIRGSLTP 309
           TQPFKE+R P   +  P
Sbjct: 293 TQPFKEERAPAASNFMP 309

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134997|ref|XP_002321957.1| predicted protein [Populus trichocarpa] gi|222868953|gb|EEF06084.1| predicted protein [Populus trichocarpa]

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/261 (72%), Positives = 212/261 (81%), Gaps = 11/261 (4%)

Query: 39  GGEEWNDAWETAWLPEDLTPKNRAPWEEDVNFGSEEIVLSSDVDAETKAFVEDMNDNWDE 98
           G +EWNDAWETAWLPEDLT KNRAPWE DVNF S   +     DAETKAFVE+MNDNWDE
Sbjct: 1   GEDEWNDAWETAWLPEDLTAKNRAPWEMDVNFSSPTGI----EDAETKAFVEEMNDNWDE 56

Query: 99  RRKNNNNNEGKHHVNSSVGLGAEGSGDKLYSLESIKKDYRLKKQRIHAALWLKEIEKQEE 158
           RRK     + K+  N       +  GD LY+L+++KKDYRLKKQRIHA LW KEIEKQ+E
Sbjct: 57  RRKTQPQPQPKNDNN-------KNGGDSLYNLDNMKKDYRLKKQRIHAGLWTKEIEKQQE 109

Query: 159 AKLDTHGPHHHHHDIDRLLDTCSEIFDSTNDDLDNAKIPSSSEFKNKPDGWETTAKEQDG 218
             ++         DIDRLLD+CSEIFD+ N+DLDN+KIPSSSEFKNKPDGWETTAK QDG
Sbjct: 110 EAMNATLGDSSPDDIDRLLDSCSEIFDTANNDLDNSKIPSSSEFKNKPDGWETTAKAQDG 169

Query: 219 NVWEMSQREEDILLQEFDRRIAYCKFQIASFIKTHIFSRRRPIDGWKYMIEEIGPNARKG 278
           N+WEMSQREEDILLQEFDRRIAY KFQ  SFIKTHIFSRRRPIDGWKYMIEE+GPNA+KG
Sbjct: 170 NIWEMSQREEDILLQEFDRRIAYSKFQATSFIKTHIFSRRRPIDGWKYMIEELGPNAKKG 229

Query: 279 KGSVSRLPGLSDPSTQPFKED 299
           KGSV+R+P LSDPSTQPFKED
Sbjct: 230 KGSVTRVPSLSDPSTQPFKED 250

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452692|ref|XP_004144093.1| PREDICTED: uncharacterized protein LOC101222958 [Cucumis sativus] gi|449525482|ref|XP_004169746.1| PREDICTED: uncharacterized LOC101222958 [Cucumis sativus]

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/277 (69%), Positives = 220/277 (79%), Gaps = 6/277 (2%)

Query: 38  DGGEEWNDAWETAWLPEDLTPKNRAPWEEDVNF--GSEEIVLSSDVDAETKAFVEDMNDN 95
           +G +EWND WE+AWLPEDL+PKN+APWE DVNF  G+  +V  SDVDA+TKAFVEDM +N
Sbjct: 58  NGDDEWNDTWESAWLPEDLSPKNKAPWESDVNFPSGNPTVVFPSDVDADTKAFVEDMTEN 117

Query: 96  WDERRKNNNNNEGKHHVNSS-VGLGAEGSGDKLYSLESIKKDYRLKKQRIHAALWLKEIE 154
           WDERRK +     K  VN    G    G G  LYSLE+IKKDYRL+KQRIHA LW+KEIE
Sbjct: 118 WDERRKASQTQ--KQGVNQEEKGGDGGGGGGSLYSLENIKKDYRLQKQRIHANLWMKEIE 175

Query: 155 KQEEAKLDTHGPHHHHHDIDRLLDTCSEIFDSTNDDLDNAKIPSSSEFKNKPDGWETTAK 214
           KQEEA+L          DI+RL+D+CSEIF+S NDDL+ +K+PSSSEF+NKPDGWET +K
Sbjct: 176 KQEEARL-GDSIAGSGDDIERLMDSCSEIFESVNDDLNRSKVPSSSEFRNKPDGWETLSK 234

Query: 215 EQDGNVWEMSQREEDILLQEFDRRIAYCKFQIASFIKTHIFSRRRPIDGWKYMIEEIGPN 274
             DGNVWEM+QREEDIL QEFDRRIAY KFQIASFIKTHIFSRRRPIDGWKYMIEE GPN
Sbjct: 235 GHDGNVWEMTQREEDILQQEFDRRIAYNKFQIASFIKTHIFSRRRPIDGWKYMIEEFGPN 294

Query: 275 ARKGKGSVSRLPGLSDPSTQPFKEDRTPIRGSLTPSR 311
           A+KGKGSVSRLP LSD STQPFKE++     SL P R
Sbjct: 295 AKKGKGSVSRLPNLSDSSTQPFKEEKVVASPSLKPLR 331

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357486783|ref|XP_003613679.1| Mucin-like protein [Medicago truncatula] gi|355515014|gb|AES96637.1| Mucin-like protein [Medicago truncatula]

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/311 (62%), Positives = 231/311 (74%), Gaps = 18/311 (5%)

Query: 1   MQTLQRIVSKKSMTKTIRCYPMTPSI--LIRALSTKPPEDGGEEWNDAWETAWLPEDLTP 58
           MQT +RI +  + T   +    T  +   IR  S++ P  G EEWN+AWE+AWLP+DLTP
Sbjct: 1   MQTFRRITTTATTTNQFKSLFSTSKLPTTIRQFSSRNPRSGEEEWNEAWESAWLPQDLTP 60

Query: 59  KNRAPWEEDVNFGSEEIVLSSDVDAETKAFVEDMNDNWDERRKNNNNNEGKHHVNSSVGL 118
           K RAPWE DVNF SEE+      DAETKAFVE+MN+NW+ERRK     +          +
Sbjct: 61  KTRAPWEGDVNFASEEVA-----DAETKAFVEEMNENWNERRKGLKKEK----------V 105

Query: 119 GAEGSGDKLYSLESIKKDYRLKKQRIHAALWLKEIEKQEEAKLDTHGPHHHHHDIDRLLD 178
             E     +YSLE+IKKDYRLKKQ++HA LW KEIEK EEAKL   G  +   DI +LLD
Sbjct: 106 EEENVKGGIYSLENIKKDYRLKKQKLHAGLWSKEIEKLEEAKLGGCGGGNGDDDIQKLLD 165

Query: 179 TCSEIFDSTNDDLDNAKIPSSSEFKNKPDGWETTAKEQDGNVWEMSQREEDILLQEFDRR 238
           +CS+IFDS N+DL+NAK P+S EFKN PDGWET +K QDGN+WEMSQREEDIL+QEF+RR
Sbjct: 166 SCSDIFDSHNNDLNNAKDPTS-EFKNMPDGWETISKNQDGNIWEMSQREEDILMQEFERR 224

Query: 239 IAYCKFQIASFIKTHIFSRRRPIDGWKYMIEEIGPNARKGKGSVSRLPGLSDPSTQPFKE 298
           IAY KFQIASFIKTHIFSRRRPIDGWKYMIE +GPNA++GKGSVSR+P LSDPSTQPFKE
Sbjct: 225 IAYSKFQIASFIKTHIFSRRRPIDGWKYMIEVVGPNAKRGKGSVSRVPSLSDPSTQPFKE 284

Query: 299 DRTPIRGSLTP 309
           ++T +  S  P
Sbjct: 285 EKTSVDKSYIP 295

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15227059|ref|NP_178391.1| mucin-related protein [Arabidopsis thaliana] gi|3461815|gb|AAC32909.1| predicted by genscan [Arabidopsis thaliana] gi|26451250|dbj|BAC42727.1| unknown protein [Arabidopsis thaliana] gi|29824133|gb|AAP04027.1| unknown protein [Arabidopsis thaliana] gi|330250545|gb|AEC05639.1| mucin-related protein [Arabidopsis thaliana]

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/309 (63%), Positives = 231/309 (74%), Gaps = 7/309 (2%)

Query: 1   MQTLQRIVSKKSMTKTIRCYPMT----PSILIRALSTKPPEDGGEEWNDAWETAWLPEDL 56
           M +L R+V   S T T      T    PSIL+  +STK   D  ++WNDAWE+AWLP+DL
Sbjct: 1   MNSLHRVVGLISRTTTTSPISHTRFNLPSILVNLMSTKSGNDE-DKWNDAWESAWLPDDL 59

Query: 57  TPKNRAPWEEDVNFGSEEIVLSS--DVDAETKAFVEDMNDNWDERRKNNNNNEGKHHVNS 114
           T K RAPWE DVNF  +E   ++  ++D E KAFVEDMN++WDERR  +   E +     
Sbjct: 60  TDKIRAPWERDVNFPVKESTATAIEEIDVEAKAFVEDMNEHWDERRGKSGKVEKREEKKK 119

Query: 115 SVGLGAEGSGDKLYSLESIKKDYRLKKQRIHAALWLKEIEKQEEAKLDTHGPHHHHHDID 174
            +G G + S   LYSLE++KKDYRLKKQR+HA+LW+KEIEK EEAKLD  G      DID
Sbjct: 120 EIGDGEDESSSSLYSLETMKKDYRLKKQRVHASLWVKEIEKLEEAKLDDSGSGGGADDID 179

Query: 175 RLLDTCSEIFDSTNDDLDNAKIPSSSEFKNKPDGWETTAKEQDGNVWEMSQREEDILLQE 234
           RLLD+CSEIFDS + D D  ++ S SE KNKPDGWE+TAKEQDGN+WEMSQREEDILLQE
Sbjct: 180 RLLDSCSEIFDSVDHDFDKLEVSSGSELKNKPDGWESTAKEQDGNLWEMSQREEDILLQE 239

Query: 235 FDRRIAYCKFQIASFIKTHIFSRRRPIDGWKYMIEEIGPNARKGKGSVSRLPGLSDPSTQ 294
           FDRR A+CKFQIASFIK HIFSRRRPIDGWKYMIE IGPNARKGKGSVSRLP LSD STQ
Sbjct: 240 FDRRTAFCKFQIASFIKQHIFSRRRPIDGWKYMIEVIGPNARKGKGSVSRLPALSDVSTQ 299

Query: 295 PFKEDRTPI 303
           PFKE+ + +
Sbjct: 300 PFKEETSSL 308

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497878|ref|XP_003517783.1| PREDICTED: uncharacterized protein LOC100806758 [Glycine max]

 Score =  356 bits (914), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 185/323 (57%), Positives = 229/323 (70%), Gaps = 28/323 (8%)

Query: 1   MQTLQRIVSKKSMTKTIRCYPMTPSILI-------RALSTKPPEDGGEEWNDAWETAWLP 53
           MQ  +R ++  +++K  + +   P I+        R  S++    G +EWN+AWETAWLP
Sbjct: 1   MQAFRRRITTTTISKA-KQFSALPYIIAGEVPATRRWWSSRKSRSGEDEWNEAWETAWLP 59

Query: 54  EDLTPKNRAPWEEDVNFGSEEIVLSSDVDAETKAFVEDMNDNWDERRKNNNNNEGKHHVN 113
           +DLTPK RAPWE DVNF S     + D D ETKAFV +MN+NW+ERRK +   E +    
Sbjct: 60  DDLTPKTRAPWESDVNFPSYSAPAAEDGDEETKAFVAEMNENWNERRKGSKEKEKREENG 119

Query: 114 SSVGLGAEGSGDKLYSLESIKKDYRLKKQRIHAALWLKEIEKQEEAKL---DTHGPHHHH 170
           +            LYSLE++KKDYRLKKQR+HA LW+KEIEK EEAKL   D  G     
Sbjct: 120 A------------LYSLENMKKDYRLKKQRMHAGLWMKEIEKLEEAKLGDSDIAG----G 163

Query: 171 HDIDRLLDTCSEIFDSTNDDLDNAKIPSSSEFKNKPDGWETTAKEQDGNVWEMSQREEDI 230
            DI RLLD+CS+IFD  N++L+NA +  +S+FKN PDGWET +K Q+GNVWEMSQREEDI
Sbjct: 164 DDIQRLLDSCSDIFDPGNNNLNNAHV-QTSDFKNMPDGWETISKNQEGNVWEMSQREEDI 222

Query: 231 LLQEFDRRIAYCKFQIASFIKTHIFSRRRPIDGWKYMIEEIGPNARKGKGSVSRLPGLSD 290
           LLQEF+RRIAY KFQIASFIKTHIFSRRRPIDGWKYMIE +GPNA++GKGSVSR+P LSD
Sbjct: 223 LLQEFERRIAYSKFQIASFIKTHIFSRRRPIDGWKYMIELVGPNAKRGKGSVSRVPSLSD 282

Query: 291 PSTQPFKEDRTPIRGSLTPSRGR 313
           PSTQPFKE++  +  +  P   R
Sbjct: 283 PSTQPFKEEKNSVDKTYVPRERR 305

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297814590|ref|XP_002875178.1| hypothetical protein ARALYDRAFT_904548 [Arabidopsis lyrata subsp. lyrata] gi|297321016|gb|EFH51437.1| hypothetical protein ARALYDRAFT_904548 [Arabidopsis lyrata subsp. lyrata]

 Score =  356 bits (913), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 189/292 (64%), Positives = 222/292 (76%), Gaps = 8/292 (2%)

Query: 24  PSILIRALSTKPPEDGGEEWNDAWETAWLPEDLTPKNRAPWEEDVNFGSEEIVLSSD-VD 82
           PSIL+  +STK   D  ++WNDAWE+AWLP+DLT K RAPWE DVNF  +E   +++ +D
Sbjct: 31  PSILVNLMSTKSGNDE-DKWNDAWESAWLPDDLTDKIRAPWETDVNFSVKESTATTEEID 89

Query: 83  AETKAFVEDMNDNWDERR-KNNNNNEGKHHVNSSVGLGAEGSGDKLYSLESIKKDYRLKK 141
            E KAFVEDMN++W+ERR K+    + +      +G G E S       E++KKDYRLKK
Sbjct: 90  VEAKAFVEDMNEHWNERRGKSGKVEKREEKNKKEIGDGEESSSSLYSL-ETMKKDYRLKK 148

Query: 142 QRIHAALWLKEIEKQEEAKLDTHGPHHHHHDIDRLLDTCSEIFDSTNDDLDNAKIPSSSE 201
           QR+HA+LW+KEIEK EEAKL   G      DIDRLLD+CSEIFDS + D D  ++ S SE
Sbjct: 149 QRVHASLWVKEIEKLEEAKLGDSGSGGGADDIDRLLDSCSEIFDSVDHDFDKLEVSSGSE 208

Query: 202 FKNKPDGWETTAKEQDGNVWEMSQREEDILLQEFDRRIAYCKFQIASFIKTHIFSRRRPI 261
            KNKPDGWE+TAKEQDGN+WEMSQREEDILLQEFDRR A+CKFQIASFIK HIFSRRRPI
Sbjct: 209 LKNKPDGWESTAKEQDGNLWEMSQREEDILLQEFDRRTAFCKFQIASFIKQHIFSRRRPI 268

Query: 262 DGWKYMIEEIGPNARKGKGSVSRLPGLSDPSTQPFKEDRTPIRGSLTPSRGR 313
           DGW+YMIE IGPNARKGKGSVSRLP LSD STQPFKE+     GSLT S+ R
Sbjct: 269 DGWRYMIEVIGPNARKGKGSVSRLPALSDVSTQPFKEE----TGSLTTSKRR 316

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499789|ref|XP_003518719.1| PREDICTED: uncharacterized protein LOC100775402 [Glycine max]

 Score =  344 bits (883), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 188/329 (57%), Positives = 228/329 (69%), Gaps = 34/329 (10%)

Query: 1   MQTLQRIVSKKSMTKTIRCYPMTPSILIRAL-------STKPPEDGGEEWNDAWETAWLP 53
           MQ  +R +S  +++ T + +   PSI+           S++    G +EWN+AWETAWLP
Sbjct: 1   MQAFRRRISTATIS-TAKQFNALPSIIAGEFPATRRRWSSRKSRSGEDEWNEAWETAWLP 59

Query: 54  EDLTPKNRAPWEEDVNFGSEEIVLS------SDVDAETKAFVEDMNDNWDERRKNNNNNE 107
           +DLTPK +APWE DVNF S     S       D D ETKAFV +MN+NW+ERRK      
Sbjct: 60  DDLTPKTQAPWESDVNFPSSSSSSSAAAANDGDGDEETKAFVAEMNENWNERRK------ 113

Query: 108 GKHHVNSSVGLGAEGSGDKLYSLESIKKDYRLKKQRIHAALWLKEIEKQEEAKL---DTH 164
           G          GA      LYS+E++KKDYRLKKQR+HA LW+KEIEK EEAKL   D  
Sbjct: 114 GSKEKEKKEENGA------LYSVENMKKDYRLKKQRMHAGLWMKEIEKLEEAKLGDSDVA 167

Query: 165 GPHHHHHDIDRLLDTCSEIFDSTNDDLDNAKIPSSSEFKNKPDGWETTAKEQDGNVWEMS 224
           G      DI RLLD+CS+IFD  N+DL+N ++  +SEFKN PDGWET +K Q+GNVWEMS
Sbjct: 168 G----DDDIQRLLDSCSDIFDPGNNDLNNVQV-QTSEFKNMPDGWETISKNQEGNVWEMS 222

Query: 225 QREEDILLQEFDRRIAYCKFQIASFIKTHIFSRRRPIDGWKYMIEEIGPNARKGKGSVSR 284
           QREEDILLQEF+RRIAY KFQIASFIKTHIFSRRRPIDGWKYMIE +GPNA++GKGSVSR
Sbjct: 223 QREEDILLQEFERRIAYSKFQIASFIKTHIFSRRRPIDGWKYMIELVGPNAKRGKGSVSR 282

Query: 285 LPGLSDPSTQPFKEDRTPIRGSLTPSRGR 313
           +P LSDPSTQPFKE++  +  +  P   R
Sbjct: 283 VPSLSDPSTQPFKEEKNSVDKTYVPRERR 311

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226533264|ref|NP_001143396.1| uncharacterized protein LOC100276037 [Zea mays] gi|195619748|gb|ACG31704.1| hypothetical protein [Zea mays]

 Score =  305 bits (782), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 167/318 (52%), Positives = 216/318 (67%), Gaps = 28/318 (8%)

Query: 16  TIRC---YPMTPSIL------IRALS----TKPP----EDGGEEWNDAWETAWLPEDLTP 58
           ++RC   YP+  +        +R LS    T PP      G +EWNBAWETAWLP D   
Sbjct: 3   SLRCALRYPIPSTAASLSTSGLRRLSSHHRTPPPLRSATTGEDEWNBAWETAWLPGDSPA 62

Query: 59  KNRAP---WEEDVNFGSEEI-VLSSDVDAETKAFVEDMNDNWDERRKNNNNNEGKHHVNS 114
            + AP   WE   +     I V+S++VD +TKAFV DM++ W ERR  +   + +    +
Sbjct: 63  SSPAPAAPWESPASASESAIPVISAEVDPDTKAFVADMDERWAERRIASRRGQQQRASRA 122

Query: 115 SVGLGAEGSGDKLYSLESIKKDYRLKKQRIHAALWLKEIEKQEEAKLDTHGPHHHHHDID 174
           + G    G G  +   ++   DYR +KQR+HAALW+KEIEK EEA+L          DID
Sbjct: 123 AEG----GEGGVVARKKAQADDYRTRKQRVHAALWVKEIEKMEEARLGGG--GGGADDID 176

Query: 175 RLLDTCSEIFDSTNDDLDNAKIPSSSEFKNKPDGWETTAKEQDGNVWEMSQREEDILLQE 234
           RLLD+CS+IFDS N D  ++KIP+++E K KPDGWETT++ QDGN+W++SQRE+DIL+QE
Sbjct: 177 RLLDSCSDIFDSGNTDFGDSKIPNTTEIKTKPDGWETTSRGQDGNIWDISQREDDILIQE 236

Query: 235 FDRRIAYCKFQIASFIKTHIFSRRRPIDGWKYMIEEIGPNARKGKGSVSRLPGLSDPSTQ 294
           F+RRIA+ K QIASFIKTHIFSRRRPIDGWKYMIEEIGPNARKGKGSV RLP +SDP+TQ
Sbjct: 237 FERRIAFSKQQIASFIKTHIFSRRRPIDGWKYMIEEIGPNARKGKGSVQRLPSVSDPATQ 296

Query: 295 PFKEDRTPIRGSLTPSRG 312
           P++E+ TP   S +  RG
Sbjct: 297 PYREE-TPAIASSSSFRG 313

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	313
TAIR|locus:2056720	314	AT2G02880 "AT2G02880" [Arabido	0.964	0.961	0.614	4.7e-96

TAIR|locus:2056720 AT2G02880 "AT2G02880" [Arabidopsis thaliana (taxid:3702)]

 Score = 955 (341.2 bits), Expect = 4.7e-96, P = 4.7e-96
 Identities = 190/309 (61%), Positives = 220/309 (71%)

Query:     1 MQTLQRIVSKKSMTKTIRCYPMT----PSILIRALSTKPPEDGGEEWNDAWETAWLPEDL 56
             M +L R+V   S T T      T    PSIL+  +STK   D  ++WNDAWE+AWLP+DL
Sbjct:     1 MNSLHRVVGLISRTTTTSPISHTRFNLPSILVNLMSTKSGNDE-DKWNDAWESAWLPDDL 59

Query:    57 TPKNRAPWEEDVNFGSEEIVLSS--DVDAETKAFVEDMXXXXXXXXXXXXXXXXXXXXXS 114
             T K RAPWE DVNF  +E   ++  ++D E KAFVEDM                      
Sbjct:    60 TDKIRAPWERDVNFPVKESTATAIEEIDVEAKAFVEDMNEHWDERRGKSGKVEKREEKKK 119

Query:   115 SVGLGAEGSGDKLYSLESIKKDYRLKKQRIHAALWLKEIEKQEEAKLDTHGPXXXXXDID 174
              +G G + S   LYSLE++KKDYRLKKQR+HA+LW+KEIEK EEAKLD  G      DID
Sbjct:   120 EIGDGEDESSSSLYSLETMKKDYRLKKQRVHASLWVKEIEKLEEAKLDDSGSGGGADDID 179

Query:   175 RLLDTCSEIFDSTNDDLDNAKIPSSSEFKNKPDGWETTAKEQDGNVWEMSQREEDILLQE 234
             RLLD+CSEIFDS + D D  ++ S SE KNKPDGWE+TAKEQDGN+WEMSQREEDILLQE
Sbjct:   180 RLLDSCSEIFDSVDHDFDKLEVSSGSELKNKPDGWESTAKEQDGNLWEMSQREEDILLQE 239

Query:   235 FDRRIAYCKFQIASFIKTHIFSRRRPIDGWKYMIEEIGPNARKGKGSVSRLPGLSDPSTQ 294
             FDRR A+CKFQIASFIK HIFSRRRPIDGWKYMIE IGPNARKGKGSVSRLP LSD STQ
Sbjct:   240 FDRRTAFCKFQIASFIKQHIFSRRRPIDGWKYMIEVIGPNARKGKGSVSRLPALSDVSTQ 299

Query:   295 PFKEDRTPI 303
             PFKE+ + +
Sbjct:   300 PFKEETSSL 308


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.132   0.393    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      313       287   0.00087  115 3  11 23  0.45    34
                                                     33  0.43    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  622 (66 KB)
  Total size of DFA:  230 KB (2123 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  25.52u 0.08s 25.60t   Elapsed:  00:00:03
  Total cpu time:  25.52u 0.08s 25.60t   Elapsed:  00:00:03
  Start:  Thu May  9 16:01:08 2013   End:  Thu May  9 16:01:11 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00026586001 SubName- Full=Chromosome chr12 scaffold_38, whole genome shotgun sequence; (299 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	313
PF12298	172	Bot1p: Eukaryotic mitochondrial regulator protein	98.89
PF12824	164	MRP-L20: Mitochondrial ribosomal protein subunit L	95.46
PF06784	179	UPF0240: Uncharacterised protein family (UPF0240);	90.62

>PF12298 Bot1p: Eukaryotic mitochondrial regulator protein ; InterPro: IPR021036 This entry represents Ribosomal protein S35, which localises to the mitochondria in live cells and co-fractionates with purified mitochondrial ribosomes

Probab=98.89  E-value=4e-10  Score=99.61  Aligned_cols=132  Identities=15%  Similarity=0.053  Sum_probs=94.9

Q ss_pred             CCCCCCCCccccccccCCCCCCcccchHHHHhHhhHhhhhHHHHHHHhHHHHHHHHhhCCCCCCCCcccHHHHHhh----
Q 021396          104 NNNEGKHHVNSSVGLGAEGSGDKLYSLESIKKDYRLKKQRIHAALWLKEIEKQEEAKLDTHGPHHHHHDIDRLLDT----  179 (313)
Q Consensus       104 ~~~~~~~aKteMY~lh~e~~~p~~ytVe~LAkdYRirkQRVhAILwLKEiE~~ee~k~g~~~~~~~~ddie~Llds----  179 (313)
                      ..+.+...|++||.++.++    +.||.+||..|+|..|||.|||.||+||++-.+.......    .........    
T Consensus        14 ~~~lse~~r~~Iy~~~~~~----~~sv~~vS~~ygi~~~RV~AIvrLkeiE~~~~~~~k~l~~----~~~~~m~~Mlp~~   85 (172)
T PF12298_consen   14 NPVLSEELREQIYEDVMQD----GKSVREVSQKYGIKIQRVEAIVRLKEIEKRWKNKGKPLAT----PYARAMERMLPVF   85 (172)
T ss_pred             CCcCCHHHHHHHHHHHHhC----CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccChhhH----HHHHHHHHHhccC
Confidence            3556667799999999999    4599999999999999999999999999987443333222    111111111    


Q ss_pred             --hhhccccCCCCccccccCCCCCccccCCCCCcccccCCCchhhhhhhHHHHHHHHHHHHhhhhh
Q 021396          180 --CSEIFDSTNDDLDNAKIPSSSEFKNKPDGWETTAKEQDGNVWEMSQREEDILLQEFDRRIAYCK  243 (313)
Q Consensus       180 --~~e~F~s~n~E~Hv~~lP~~p~FKv~P~Gwd~tak~~d~~~wEiS~kEe~iLlqEF~rRl~yNk  243 (313)
                        ...+..-..+|+|+..+.....|..+++..+-+..|....+-...+.+--..+++|....+...
T Consensus        86 ~~~~~~~~E~~~ei~v~~~t~~q~F~~vsES~~F~p~DAak~~~~~Pa~~~~~~~~~~~~~~~~~~  151 (172)
T PF12298_consen   86 KPQSQRPHENINEIPVHSLTMQQRFLPVSESEPFTPVDAAKAFELEPADETLEKLEEIGEESEIHE  151 (172)
T ss_pred             CCccccCCCchhccCcccccCCceeEecCCCcccchhhHHHhccCCCccchhcchhhhhchHhhcC
Confidence              1112333456889988988999999999999998888877655666666667777766644443

This group of proteins have a novel function in the control of cell respiration by acting on the mitochondrial protein synthesis machinery and a role in mitochondrial integrity. Observations also indicate that in Schizosaccharomyces pombe (Fission yeast), alterations of mitochondrial function are linked to changes in cell cycle and cell morphology control mechanisms [].

>PF12824 MRP-L20: Mitochondrial ribosomal protein subunit L20; InterPro: IPR024388 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=95.46  E-value=0.004  Score=55.17  Aligned_cols=45  Identities=9%  Similarity=0.070  Sum_probs=39.6

Q ss_pred             CCCCCCccccccccCCCCCCcccchHHHHhHhhHhhhhHHHHHHHhH
Q 021396          106 NEGKHHVNSSVGLGAEGSGDKLYSLESIKKDYRLKKQRIHAALWLKE  152 (313)
Q Consensus       106 ~~~~~aKteMY~lh~e~~~p~~ytVe~LAkdYRirkQRVhAILwLKE  152 (313)
                      ...++...+|+.|.++|  |.+||+..|||.|.|-.+.|+.+.....
T Consensus        85 ~Lt~e~i~Eir~LR~~D--P~~wTr~~LAkkF~~S~~fV~~v~~~~~  129 (164)
T PF12824_consen   85 HLTPEDIQEIRRLRAED--PEKWTRKKLAKKFNCSPLFVSMVAPAPK  129 (164)
T ss_pred             cCCHHHHHHHHHHHHcC--chHhhHHHHHHHhCCCHHHHHHhcCCCH
Confidence            34455578999999999  9999999999999999999999988764

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents the essential mitochondrial ribosomal protein L20 family from fungi [].

>PF06784 UPF0240: Uncharacterised protein family (UPF0240); InterPro: IPR009622 This is a group of proteins of unknown function

Probab=90.62  E-value=0.15  Score=45.75  Aligned_cols=30  Identities=17%  Similarity=0.359  Sum_probs=26.8

Q ss_pred             cccCCCCCCcccchHHHHhHhhHhhhhHHHHH
Q 021396          117 GLGAEGSGDKLYSLESIKKDYRLKKQRIHAAL  148 (313)
Q Consensus       117 ~lh~e~~~p~~ytVe~LAkdYRirkQRVhAIL  148 (313)
                      ..|+.+  |++||+|.||.+|.|...=|.+||
T Consensus       128 ~~Hq~~--P~~WtaekIA~eY~L~~~dv~~iL  157 (179)
T PF06784_consen  128 NNHQLD--PETWTAEKIAQEYKLDEKDVKNIL  157 (179)
T ss_pred             HHhccC--ccccCHHHHHHHhCCCHHHHHHHH
Confidence            347777  999999999999999999988887

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	313
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 7e-05
 Identities = 29/255 (11%), Positives = 66/255 (25%), Gaps = 56/255 (21%)

Query: 51  WLPEDLTPKNRAPWEEDVNFGSEEIVLSSDVDAETKAFVEDMNDNWDERR--KNNNNNEG 108
           +L   +  + R P      +  +   L +D     K  V  +      R+        + 
Sbjct: 93  FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152

Query: 109 KHHVNSSVGL-GAEGSGDKLYSLESIKKDYRLKKQRIHAALWLKEIEKQEEAKLDTHGPH 167
                  V + G  GSG    +L+     Y+++ +      WL  ++     +       
Sbjct: 153 -------VLIDGVLGSGKTWVALDVC-LSYKVQCKMDFKIFWLN-LKNCNSPETVLEMLQ 203

Query: 168 HHHHDIDRLLDTCSEIFDSTNDDLDNAKIPSSSEFKNKP---------DGWETTAKEQDG 218
              + ID    + S+   +    + + +       K+KP         +         + 
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ-------NA 256

Query: 219 NVWEMSQREEDILLQEFDRRIAYCKFQIASFIKTHIFSRRRPIDGWKYMIEEIGPNARKG 278
             W             F+     C        K  + +R + +       + +       
Sbjct: 257 KAWNA-----------FNLS---C--------KILLTTRFKQV------TDFLSAATTTH 288

Query: 279 KGSVSRLPGLSDPST 293
                    L+    
Sbjct: 289 ISLDHHSMTLTPDEV 303

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00