Citrus Sinensis ID: 021405

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310--
Protein Sequence
MQAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVDFLMPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSFKAAVDALIDEMRVQSGGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVELFFTLLYANMSDS
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcHHccccccccHHHHHHccHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccHcccHHHHHHHHHHHHHHHHcccccccHHHHcccccccHHHHHHcccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHccHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MQAHYEEVQRIADATTLPHAMHYLSIRIAeeldlspltdkllrgkeqpytlsssekLELWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIdtarglgssdlpedadlidrddQQKFLASVDYLANYGMQAMISNVQAAADEAlkgkqlrdIFNTVVLHETFMQILEVFMsmgsphqwvdflmpqdiRFYKLVTasghdettlsgatkfDELMVETRAVLSSAEYTSVVDMSFKAAVDALIDEMRvqsggslisgmplaklvprvvqmspsllaepsnnRIIQVIRTIPEVELFFTLLYANMSDS
Flexible Loop (DISEMBL)
MQAHYEEVQriadattlpHAMHYLSIRIAEELDLSPLTDKLLrgkeqpytlssseklelWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVDFLMPQDIRFYKLVTASGHDettlsgatkfdeLMVETRAVLSSAEYTSVVDMSFKAAVDALIDEMRVQSGGSLISGMPLAKLVPRVVQMSpsllaepsnnrIIQVIRTIPEVELFFTLLYANMSDS
Low Complexity Region (SEG)
MQAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVDFLMPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSFKAAVDALIDEMRVQSGGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVELFFTLLYANMSDS
Disordered region (IsUnstruct)
*********RIADATTLPHAMHYLSIRIAEELDLSPLTDKLLR*****YTL***EKLELWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLG*********LIDRDDQQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVDFLMPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSFKAAVDALIDEMRVQSGGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVELFFTLLYA*****
Disordered Region (DISOPRED)
MQAHYEEVQRIADATTLPHAMHYLSIRIAEELDLS***********************LWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYID**********************QKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFM***SPHQWVDFLMPQDIRFYK*************GATKFDELMVETRAVLSSAEYTSVVDMSFKAAVDALID*****************KLVPRVVQMSP*****PSNNRIIQVIRTIPEVELFFTLLYANMS**
Disordered Region (DISEMBL)
********QRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVDFLMPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSFKAAVDALIDEMRVQSGGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVELFFTLLYANMSDS
Disordered Region (DISPRO)
MQAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLG*******ADLIDRDDQQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVDFLMPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSFKAAVDALIDEMRVQSGGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVELFFTLLYANMS**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVDFLMPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSFKAAVDALIDEMRVQSGGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVELFFTLLYANMSDS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	312	2.2.26 [Sep-21-2011]
Q8S9K7	364	Peroxisome biogenesis pro	yes	no	0.964	0.826	0.575	1e-100
Q8LDG7	358	Peroxisome biogenesis pro	no	no	0.948	0.826	0.567	1e-95
Q60HE1	373	Peroxisomal biogenesis fa	N/A	no	0.903	0.756	0.283	4e-19
Q9JJK3	373	Peroxisomal biogenesis fa	N/A	no	0.807	0.675	0.275	5e-19
P56589	373	Peroxisomal biogenesis fa	yes	no	0.913	0.764	0.276	6e-19
A6H7C2	373	Peroxisomal biogenesis fa	yes	no	0.839	0.702	0.276	3e-18
Q9QXY9	372	Peroxisomal biogenesis fa	yes	no	0.839	0.704	0.274	2e-17
Q9JJK4	372	Peroxisomal biogenesis fa	yes	no	0.833	0.698	0.275	2e-17
Q54U86	405	Peroxisome biogenesis fac	yes	no	0.807	0.622	0.214	6e-06

>sp|Q8S9K7|PEX32_ARATH Peroxisome biogenesis protein 3-2 OS=Arabidopsis thaliana GN=PEX3-2 PE=2 SV=1

 Score =  365 bits (936), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 179/311 (57%), Positives = 237/311 (76%), Gaps = 10/311 (3%)

Query: 1   MQAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELW 60
           M+AH+E +Q I D+TTLPHAM +LSIRI+EE+D+S + D+L +GK     LS  EKL+LW
Sbjct: 60  MKAHFESIQMIVDSTTLPHAMQFLSIRISEEIDVSHVMDRLNQGKGM---LSPPEKLQLW 116

Query: 61  DRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDD 120
           D LKILSFT++V++LW+VTM+SLYIRVQVNILGRHLY+DTAR LGSS L E+ DLIDRDD
Sbjct: 117 DELKILSFTRMVLSLWSVTMLSLYIRVQVNILGRHLYVDTARALGSSHLLEEVDLIDRDD 176

Query: 121 QQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMG 180
           +QKFL+S D+L    M ++IS++Q +A+E LKGKQL+D+  T VL ET MQI++VFMS G
Sbjct: 177 EQKFLSSADFLVTNAMPSLISDMQGSAEEVLKGKQLKDVITTRVLQETVMQIVDVFMSTG 236

Query: 181 SPHQWVDFL-MPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMS 239
           SPH WVD+L MPQD +  +  T+   DE      +KF +LMVETR VL S E+T++V++S
Sbjct: 237 SPHHWVDYLMMPQDTKLSR-TTSDSSDE----AVSKFHQLMVETREVLISTEFTNIVEIS 291

Query: 240 FKAAVDALIDEMRVQS-GGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEV 298
            K   D L++EM  Q+  G L +G PLAK++P++ +    + AEPS NR +Q+IR +PEV
Sbjct: 292 LKCFTDVLVEEMETQTEAGGLATGKPLAKVLPQIEKTMNVITAEPSKNRFLQIIRDLPEV 351

Query: 299 ELFFTLLYANM 309
           +LFFTLLYANM
Sbjct: 352 KLFFTLLYANM 362

Involved in morphology determination of peroxisomes, but not in import of peroxisomal matrix proteins. May act as a docking factor for PEX19 and be necessary for the import of peroxisomal membrane proteins in the peroxisomes.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8LDG7|PEX31_ARATH Peroxisome biogenesis protein 3-1 OS=Arabidopsis thaliana GN=PEX3-1 PE=2 SV=2

 Score =  349 bits (896), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 176/310 (56%), Positives = 229/310 (73%), Gaps = 14/310 (4%)

Query: 1   MQAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELW 60
           M+AH++ +Q IAD TTLPHA+H+LS R+ EE+D+S + DKL +GK     L  SEKL+LW
Sbjct: 60  MKAHFDNIQMIADTTTLPHAIHHLSSRVVEEIDVSSIMDKLSKGKG---ILIPSEKLQLW 116

Query: 61  DRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDD 120
           + LKILSFT++V++LW+VTM+SLYIRVQVNILGRHLYIDTARGLGSS L ++ DLI+RDD
Sbjct: 117 NELKILSFTRMVLSLWSVTMLSLYIRVQVNILGRHLYIDTARGLGSSHLLDELDLIERDD 176

Query: 121 QQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMG 180
           +QKFL S D+LA  GM ++ISN+Q A  E LKGKQL+D+  T  L ET M+IL+VFMS G
Sbjct: 177 EQKFLTSADFLATSGMPSLISNMQNAVKEVLKGKQLKDVLTTSALRETVMRILDVFMSTG 236

Query: 181 SPHQWVDFL-MPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMS 239
           SPH WVD+L M QD         S  D T     TKF  L+ ETR VL+S ++++V ++S
Sbjct: 237 SPHHWVDYLMMSQD----ATTDVSSSDAT----VTKFHLLITETREVLTSNDFSNVAEIS 288

Query: 240 FKAAVDALIDEMRVQSGGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVE 299
            K    AL++EM  Q+G  L +GM LAKL+P++ +  P + AEP  NR +Q+IR +PEV+
Sbjct: 289 LKCCAVALVEEMETQTG--LATGMQLAKLLPQIEKTMPEISAEPEKNRFLQLIRDLPEVK 346

Query: 300 LFFTLLYANM 309
           LFFTLLYANM
Sbjct: 347 LFFTLLYANM 356

Involved in morphology determination of peroxisomes, but not in import of peroxisomal matrix proteins. May act as a docking factor for PEX19 and be necessary for the import of peroxisomal membrane proteins in the peroxisomes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q60HE1|PEX3_MACFA Peroxisomal biogenesis factor 3 OS=Macaca fascicularis GN=PEX3 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 166/339 (48%), Gaps = 57/339 (16%)

Query: 2   QAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWD 61
           Q H+E  QR  + T L   +  L   + ++L+   LT  L   K +P     S KLE+W+
Sbjct: 55  QYHFESNQRTCNMTVLS-MLPTLREALMQQLNSESLTALL---KNRP-----SNKLEIWE 105

Query: 62  RLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQ 121
            LKI+SFT+ +VA+++  M+ + +RVQ+NI+G ++Y+D A  +G +       L   D Q
Sbjct: 106 DLKIISFTRSIVAVYSTCMLVVLLRVQLNIIGGYIYLDNA-AVGKNG---TTILAPPDVQ 161

Query: 122 QKFLASVDYLANYGMQAMISNVQAAADEALKG-------------KQLRDIFNTVVLHET 168
           Q++L+S+ +L   G+  +I+ ++ A  + L               ++L++I N V  H++
Sbjct: 162 QQYLSSIQHLLGDGLTELITVIKQAVQKILGSVSLKHSLSLLDLEQKLKEIRNLVEQHKS 221

Query: 169 FMQILEVFMSMGSPHQWVDFLMPQDIRFYKLVTASG---HDETTLSGATKFDELMVETRA 225
              I       GS      ++MP D      V A G    D TT+       +L+ ETR 
Sbjct: 222 SSWI----NKDGSKSLLCHYMMP-DEETPLAVQACGLSPRDITTI-------KLLNETRD 269

Query: 226 VLSSAEYTSVVDMSFKAAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRV 272
           +L S ++++V++         L+D M          +Q G S+ S     +PLAK++P V
Sbjct: 270 MLESPDFSTVLNTCLNRGFSRLLDNMAEFFRPTEQDLQHGNSMNSLSSVSLPLAKIIPIV 329

Query: 273 VQMSPSLLAE-PSNNRIIQVIRTIPEVELFFTLLYANMS 310
                S+ +E PS+   +Q + T+ +V+ F   +Y   S
Sbjct: 330 NGQIHSVCSETPSH--FVQDLLTMEQVKDFAANVYEAFS 366

Involved in peroxisome biosynthesis and integrity. Assembles membrane vesicles before the matrix proteins are translocated. As a docking factor for PEX19, is necessary for the import of peroxisomal membrane proteins in the peroxisomes.

Macaca fascicularis (taxid: 9541)

>sp|Q9JJK3|PEX3_CRILO Peroxisomal biogenesis factor 3 OS=Cricetulus longicaudatus GN=PEX3 PE=2 SV=1

 Score = 95.1 bits (235), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 143/294 (48%), Gaps = 42/294 (14%)

Query: 2   QAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWD 61
           Q H+E  QR  + T L   +  L   + ++L+   LT  L   K +P     S KLE+W+
Sbjct: 55  QYHFESNQRTCNMTVL-SMLPTLREALMQQLNSESLTALL---KNRP-----SNKLEIWE 105

Query: 62  RLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTAR-GLGSSDLPEDADLIDRDD 120
            LKI+SFT+ +VA+++  M+ + +RVQ+NI+G ++Y+D A  G   + +     L   D 
Sbjct: 106 DLKIISFTRSIVAVYSTCMLVVLLRVQLNIIGGYIYLDNATVGKNGTTV-----LAPPDV 160

Query: 121 QQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMG 180
           QQ++L+S+ +L   G+  +++ ++ A    L    L+   + + L +   +I  +     
Sbjct: 161 QQQYLSSIQHLLGDGLTELVTVIKQAVQRILGSVSLKHSLSLLDLEQKLKEIRILVEQHR 220

Query: 181 SPHQWVDFLMPQDIRFYKLVTASGHDETTLSGATKFD---------ELMVETRAVLSSAE 231
           SP  W+D    +D+    L      DE T   A  +          +L+ ETR +L S +
Sbjct: 221 SP-SWID----KDVSKSSLCQYMMPDEETPLAAQAYGLSPRDITTIKLLNETRDMLESPD 275

Query: 232 YTSVVDMSFKAAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRV 272
           +++V++         L+D M          +Q G S+ S     +PLAK++P V
Sbjct: 276 FSTVLNTCLNRGFSRLLDNMAEFFRPTEQDLQHGNSINSLSSVSLPLAKIIPIV 329

Involved in peroxisome biosynthesis and integrity. Assembles membrane vesicles before the matrix proteins are translocated. As a docking factor for PEX19, is necessary for the import of peroxisomal membrane proteins in the peroxisomes.

Cricetulus longicaudatus (taxid: 10030)

>sp|P56589|PEX3_HUMAN Peroxisomal biogenesis factor 3 OS=Homo sapiens GN=PEX3 PE=1 SV=1

 Score = 95.1 bits (235), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 164/336 (48%), Gaps = 51/336 (15%)

Query: 2   QAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWD 61
           Q H+E  QR  + T L   +  L   + ++L+   LT  L   K +P     S KLE+W+
Sbjct: 55  QYHFESNQRTCNMTVLS-MLPTLREALMQQLNSESLTALL---KNRP-----SNKLEIWE 105

Query: 62  RLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQ 121
            LKI+SFT+  VA+++  M+ + +RVQ+NI+G ++Y+D A  +G +       L   D Q
Sbjct: 106 DLKIISFTRSTVAVYSTCMLVVLLRVQLNIIGGYIYLDNA-AVGKNG---TTILAPPDVQ 161

Query: 122 QKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGS 181
           Q++L+S+ +L   G+  +I+ ++ A  + L    L+   + + L +   +I  +     S
Sbjct: 162 QQYLSSIQHLLGDGLTELITVIKQAVQKVLGSVSLKHSLSLLDLEQKLKEIRNLVEQHKS 221

Query: 182 PHQWVD----------FLMPQDIRFYKLVTASG---HDETTLSGATKFDELMVETRAVLS 228
              W++          ++MP D      V A G    D TT+       +L+ ETR +L 
Sbjct: 222 S-SWINKDGSKPLLCHYMMP-DEETPLAVQACGLSPRDITTI-------KLLNETRDMLE 272

Query: 229 SAEYTSVVDMSFKAAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRVVQM 275
           S ++++V++         L+D M          +Q G S+ S     +PLAK++P V   
Sbjct: 273 SPDFSTVLNTCLNRGFSRLLDNMAEFFRPTEQDLQHGNSMNSLSSVSLPLAKIIPIVNGQ 332

Query: 276 SPSLLAE-PSNNRIIQVIRTIPEVELFFTLLYANMS 310
             S+ +E PS+   +Q + T+ +V+ F   +Y   S
Sbjct: 333 IHSVCSETPSH--FVQDLLTMEQVKDFAANVYEAFS 366

Involved in peroxisome biosynthesis and integrity. Assembles membrane vesicles before the matrix proteins are translocated. As a docking factor for PEX19, is necessary for the import of peroxisomal membrane proteins in the peroxisomes.

Homo sapiens (taxid: 9606)

>sp|A6H7C2|PEX3_BOVIN Peroxisomal biogenesis factor 3 OS=Bos taurus GN=PEX3 PE=2 SV=1

 Score = 92.8 bits (229), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 154/311 (49%), Gaps = 49/311 (15%)

Query: 2   QAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWD 61
           Q H+E  QR  + T L   +  L   + ++L+   LT  L   K +P     S KLE+W+
Sbjct: 55  QYHFESNQRTCNMTVLS-MLPTLREALMQQLNSESLTALL---KTRP-----SNKLEIWE 105

Query: 62  RLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQ 121
            LKI+SFT+ +VA+++  M+ + +RVQ+NI+G ++Y+D A  +G +       L   D Q
Sbjct: 106 DLKIISFTRSIVAVYSTCMLVVLLRVQLNIIGGYIYLDNA-AVGKNG---TTVLAPPDVQ 161

Query: 122 QKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGS 181
           Q++L+S+ +L   G+  +I+ ++ A  + L    L+   + + L +   +I ++     S
Sbjct: 162 QQYLSSIQHLLGDGLTELITVIKQAVQKILGSVSLKHSLSLLDLEQKLKEIRDLVEQHKS 221

Query: 182 PHQWVD----------FLMPQDIRFYKLVTASG---HDETTLSGATKFDELMVETRAVLS 228
              W++          ++MP D      V A G    D TT+       +L+ ETR +L 
Sbjct: 222 S-SWINNDGSKSLLCHYMMP-DEETPLAVQACGLSPRDVTTI-------KLLNETRDMLE 272

Query: 229 SAEYTSVVDMSFKAAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRVVQM 275
           S ++++V++         L+D M          +Q G S+ S     +PLAK++P +   
Sbjct: 273 SPDFSTVLNTCLSRGFSRLLDNMAEFFRPTEQDLQHGNSINSLSSVSLPLAKIIPIINGQ 332

Query: 276 SPSLLAE-PSN 285
             S+ +E PS+
Sbjct: 333 IHSVCSETPSH 343

Involved in peroxisome biosynthesis and integrity. Assembles membrane vesicles before the matrix proteins are translocated. As a docking factor for PEX19, is necessary for the import of peroxisomal membrane proteins in the peroxisomes.

Bos taurus (taxid: 9913)

>sp|Q9QXY9|PEX3_MOUSE Peroxisomal biogenesis factor 3 OS=Mus musculus GN=Pex3 PE=2 SV=1

 Score = 90.1 bits (222), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 149/310 (48%), Gaps = 48/310 (15%)

Query: 2   QAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWD 61
           Q H+E  QR  + T L   +  L   + ++L+   LT  L   K +P     S KLE+W+
Sbjct: 55  QYHFESNQRTCNMTVLS-MLPTLREALMQQLNSESLTALL---KSRP-----SNKLEIWE 105

Query: 62  RLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTAR-GLGSSDLPEDADLIDRDD 120
            LKI+SFT+ +VA+++  M+ + +RVQ+NI+G ++Y+D A  G   + +     L   D 
Sbjct: 106 DLKIISFTRSIVAVYSTCMLVVLLRVQLNIIGGYIYLDNATVGKNGTTV-----LAPPDV 160

Query: 121 QQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMG 180
           QQ++L+S+ +L   G+  +++ ++ A    L    L+   + + L +   +I      + 
Sbjct: 161 QQQYLSSIQHLLGDGLTELVTVIKQAVQRILGSVSLKHSLSLLDLEQKLKEI----RILV 216

Query: 181 SPHQ--WVDFLMPQDIRFYKLVTASGHDETTLSGATKFD---------ELMVETRAVLSS 229
             HQ  W D    +D+    L      DE T   A  +          +L+ ETR +L S
Sbjct: 217 EQHQSSWND----KDVSRSSLCQYMMPDEETPLAAQAYGLSHRDITTIKLLNETRDMLES 272

Query: 230 AEYTSVVDMSFKAAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRVVQMS 276
            ++++V++         L+D M          +Q G S+ S     +PLAK++P V    
Sbjct: 273 PDFSTVLNTCLNRGFSRLLDNMAEFFRPTEQDLQHGNSINSLSSVSLPLAKIIPIVNGQI 332

Query: 277 PSLLAE-PSN 285
            S+ +E PS+
Sbjct: 333 HSVCSETPSH 342

Involved in peroxisome biosynthesis and integrity. Assembles membrane vesicles before the matrix proteins are translocated. As a docking factor for PEX19, is necessary for the import of peroxisomal membrane proteins in the peroxisomes.

Mus musculus (taxid: 10090)

>sp|Q9JJK4|PEX3_RAT Peroxisomal biogenesis factor 3 OS=Rattus norvegicus GN=Pex3 PE=1 SV=1

 Score = 89.7 bits (221), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 152/312 (48%), Gaps = 52/312 (16%)

Query: 2   QAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWD 61
           Q H+E  QR  + T L   +  L   + ++L+   LT  L   K +P     S KLE+W+
Sbjct: 55  QYHFESNQRTCNMTVLS-MLPTLREALMQQLNSESLTALL---KNRP-----SNKLEIWE 105

Query: 62  RLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTAR-GLGSSDLPEDADLIDRDD 120
            LKI+SFT+ +VA+++  M+ + +RVQ+NI+G ++Y+D A  G   + +     L   D 
Sbjct: 106 DLKIISFTRSIVAVYSTCMLVVLLRVQLNIIGGYIYLDNATVGKNGTSI-----LAPPDV 160

Query: 121 QQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQI---LEVFM 177
           QQ++L+S+ +L   G+  +++ ++ A    L    L+   + + L +   +I   +E   
Sbjct: 161 QQQYLSSIQHLLGDGLTELVTVIKQAVQRILGSISLKHSLSLLDLEQKLKEIRTLVEQHR 220

Query: 178 SM-----GSPHQWVDFLMPQD-----IRFYKLVTASGHDETTLSGATKFDELMVETRAVL 227
           S       S      ++MP +      + Y L   S  D TT+       +L+ ETR +L
Sbjct: 221 SCWNDKDASKSSLCHYMMPDEETPLAAQAYGL---SPRDITTI-------KLLNETRDML 270

Query: 228 SSAEYTSVVDMSFKAAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRVVQ 274
            S ++++V++         L+D M          +Q G S+ S     +PLAK++P V  
Sbjct: 271 ESPDFSTVLNTCLNRGFSRLLDNMAEFFRPTEQDLQHGNSINSLSSVSLPLAKIIPIVNG 330

Query: 275 MSPSLLAE-PSN 285
              S+ +E PS+
Sbjct: 331 QIHSVCSETPSH 342

Involved in peroxisome biosynthesis and integrity. Assembles membrane vesicles before the matrix proteins are translocated. As a docking factor for PEX19, is necessary for the import of peroxisomal membrane proteins in the peroxisomes.

Rattus norvegicus (taxid: 10116)

>sp|Q54U86|PEX3_DICDI Peroxisome biogenesis factor 3 OS=Dictyostelium discoideum GN=pex3 PE=3 SV=1

 Score = 52.0 bits (123), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 64/298 (21%), Positives = 132/298 (44%), Gaps = 46/298 (15%)

Query: 28  IAEELDLSPLTDKL-------LRGKEQPYTLSSSEKLELWDRLKILSFTKLVVALWAVTM 80
           I + +D + + DK+       +R ++ P     SEKL+L D+LK+   TKL   L+ + M
Sbjct: 86  ITKFIDENKILDKIQTPSLASIRSEKDP-----SEKLKLTDQLKVSIITKLFSVLYIIPM 140

Query: 81  VSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQQKFLASVD---YLANYGMQ 137
           V+++ R+Q+N++G++ Y+D    L          LI++  +  F+ S +   +  +    
Sbjct: 141 VTIFNRLQINLIGKYCYLDYV--LYKDQEQHSMRLINQQTESNFINSRNNCYFFKDINFS 198

Query: 138 AMISNVQAAADEALKGKQLRDIFNTVVLHETFMQIL----------EVFMSMGSPHQWVD 187
             I+ +Q     +LK  ++    +     E F+++L          E+  S+ S +  + 
Sbjct: 199 QFINLIQEQIKISLKDWKI----DQQSSFEGFLKLLINIRNNFEKKEIIASISSDNSLLK 254

Query: 188 FLMPQDIRFYKLVTASGHDETTLSGATKFDELMV---ETRAVLSSAEYTSV----VDMSF 240
           +L+P +     LV +    E       ++  L +   E R +  S ++  V    ++ SF
Sbjct: 255 YLIPTEEEIDNLVQSQKTPEN--DNDIEYQNLKMLYNEIRNIFESQKFYDVLKDSINQSF 312

Query: 241 KAAVDALID-----EMRVQSGGSLISGMPLAKLVPR-VVQMSPSLLAEPSNNRIIQVI 292
                 L +     E++ Q    ++  +P+   +P+ +V M   +L    N +I  +I
Sbjct: 313 LEFTKNLREDFESTELKKQIDSIVLPDLPIEMEIPKPLVTMHNIILLPKINKQIGNII 370

Involved in peroxisome biosynthesis.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	312
224135481	374	predicted protein [Populus trichocarpa]	0.987	0.823	0.675	1e-119
224118704	374	predicted protein [Populus trichocarpa]	0.987	0.823	0.668	1e-118
225456094	373	PREDICTED: peroxisome biogenesis protein	0.990	0.828	0.678	1e-116
255577364	373	amino acid transporter, putative [Ricinu	0.980	0.820	0.661	1e-114
356512996	369	PREDICTED: peroxisome biogenesis protein	0.980	0.829	0.6	1e-106
449497537	373	PREDICTED: peroxisome biogenesis protein	0.990	0.828	0.598	1e-103
449439105	373	PREDICTED: peroxisome biogenesis protein	0.990	0.828	0.594	1e-102
255639582	369	unknown [Glycine max]	0.980	0.829	0.574	1e-101
356524660	369	PREDICTED: peroxisome biogenesis protein	0.980	0.829	0.574	1e-101
22330115	364	peroxin 3 [Arabidopsis thaliana] gi|7516	0.964	0.826	0.575	2e-98

>gi|224135481|ref|XP_002322084.1| predicted protein [Populus trichocarpa] gi|222869080|gb|EEF06211.1| predicted protein [Populus trichocarpa]

 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 210/311 (67%), Positives = 251/311 (80%), Gaps = 3/311 (0%)

Query: 1   MQAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELW 60
           +Q H+E VQ IAD TTLPHAM YL  RIAEELDLS LT++L +GK QP TL+SSEKLELW
Sbjct: 60  LQDHFENVQLIADTTTLPHAMQYLRTRIAEELDLSQLTERLQKGKGQPTTLTSSEKLELW 119

Query: 61  DRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDD 120
           DRLKILSFT+++V+LWAVTM+SLYI+VQVNILGRHLYIDTARGLGSS L E+ DL+DRDD
Sbjct: 120 DRLKILSFTQMLVSLWAVTMLSLYIKVQVNILGRHLYIDTARGLGSSLLLENVDLVDRDD 179

Query: 121 QQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMG 180
           QQKFLAS D+LAN G+ A+ISN+QA   E L+GK+L D+FNT  LHET MQIL  FMSMG
Sbjct: 180 QQKFLASADFLANNGLLALISNIQAVVTEVLEGKKLTDLFNTTSLHETVMQILNKFMSMG 239

Query: 181 SPHQWVDFLMPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSF 240
           SPHQW+D+LMP+D    KL  +S  D+  L  +  FD+LMVE RAVLSSAE+  ++++S 
Sbjct: 240 SPHQWIDYLMPEDCGHCKLGPSSSIDDMILPDSMNFDQLMVEARAVLSSAEFGKIMEISL 299

Query: 241 KAAVDALIDEMRVQS---GGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPE 297
           K AVDAL+D+M  QS   G SL  GMPLAKL+ RV+Q+ PSLL E S N+IIQ+IR +PE
Sbjct: 300 KVAVDALVDDMEAQSQSTGASLTLGMPLAKLLSRVLQIVPSLLGEASQNQIIQIIRNVPE 359

Query: 298 VELFFTLLYAN 308
           VELFFTLLYAN
Sbjct: 360 VELFFTLLYAN 370

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118704|ref|XP_002317886.1| predicted protein [Populus trichocarpa] gi|222858559|gb|EEE96106.1| predicted protein [Populus trichocarpa]

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 208/311 (66%), Positives = 253/311 (81%), Gaps = 3/311 (0%)

Query: 1   MQAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELW 60
           +QAH+E VQ IAD TTLPHAM YL  RIAEELDLS LT++L +GK +PYTL+SSEKLELW
Sbjct: 60  LQAHFENVQLIADTTTLPHAMQYLRSRIAEELDLSQLTERLQKGKGKPYTLTSSEKLELW 119

Query: 61  DRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDD 120
           DRLKILSFT++VV+LWAVT++SLYI+VQVNILGRHLYIDTARGLGSS L E+ DLIDRDD
Sbjct: 120 DRLKILSFTQMVVSLWAVTILSLYIKVQVNILGRHLYIDTARGLGSSLLLENVDLIDRDD 179

Query: 121 QQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMG 180
           QQ FLA  D+LAN G+ A+ISN+QA   E ++GK+L D+FNT   HET MQIL+ FMS+G
Sbjct: 180 QQNFLAGADFLANNGLLALISNIQAVVTEVIEGKKLIDLFNTTSFHETVMQILDKFMSVG 239

Query: 181 SPHQWVDFLMPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSF 240
           S HQW+D+LMP+D   YKL T+S  D+T L  +T FD+LMVE R VLSSAE+  ++ +S 
Sbjct: 240 SLHQWIDYLMPEDSGHYKLGTSSSIDDTVLPNSTNFDQLMVEARTVLSSAEFGKIMGISL 299

Query: 241 KAAVDALIDEMRVQ---SGGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPE 297
           K AVDAL+++M  Q   +G SL SGMPLAKL+ RV+QM PSLL E S N+ I++IRT+PE
Sbjct: 300 KVAVDALVEDMEAQCQSTGASLTSGMPLAKLLSRVMQMVPSLLREASQNQFIKIIRTVPE 359

Query: 298 VELFFTLLYAN 308
           VELFFTLLYAN
Sbjct: 360 VELFFTLLYAN 370

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456094|ref|XP_002281306.1| PREDICTED: peroxisome biogenesis protein 3-2 [Vitis vinifera] gi|297734292|emb|CBI15539.3| unnamed protein product [Vitis vinifera]

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 211/311 (67%), Positives = 253/311 (81%), Gaps = 2/311 (0%)

Query: 1   MQAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELW 60
           MQAH+E +QRIAD TTLPH+M YLS RIAEELDLS LT++L++GK QP TL+ SEKLELW
Sbjct: 60  MQAHFESIQRIADTTTLPHSMLYLSGRIAEELDLSHLTERLMKGKGQPNTLTPSEKLELW 119

Query: 61  DRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDD 120
           DRLKILSFT++V++LWA+TM+SLYIRVQVNILGRHLYIDTARG GSS L E+AD IDR D
Sbjct: 120 DRLKILSFTRMVLSLWAMTMLSLYIRVQVNILGRHLYIDTARGGGSSHLLEEADPIDRHD 179

Query: 121 QQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMG 180
           QQKFLAS D+L+NY + A+ISN+ AAA E LKGKQLRD+FN++VLH T MQIL++F+S G
Sbjct: 180 QQKFLASADFLSNYSIPALISNMHAAAAEVLKGKQLRDVFNSMVLHGTIMQILDLFISTG 239

Query: 181 SPHQWVDFLMPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSF 240
            PH  VD+LMP D + YK  + S  D +T +  TKFD+LMVETRAVLSSAE+ +V+D+S 
Sbjct: 240 KPHNLVDYLMPDDTKSYKPASPSNGDSSTPADVTKFDQLMVETRAVLSSAEFINVIDVSL 299

Query: 241 KAAVDALI-DEMRVQ-SGGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEV 298
           +  VDA++ D M VQ  GGS  SGM LAKL+PRV QM P LL EPS NR IQ+I+  PEV
Sbjct: 300 RTVVDAVVEDMMGVQLGGGSPSSGMVLAKLLPRVAQMGPLLLEEPSKNRFIQIIQKAPEV 359

Query: 299 ELFFTLLYANM 309
           E FFTLLYANM
Sbjct: 360 EFFFTLLYANM 370

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577364|ref|XP_002529562.1| amino acid transporter, putative [Ricinus communis] gi|223530974|gb|EEF32831.1| amino acid transporter, putative [Ricinus communis]

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 203/307 (66%), Positives = 245/307 (79%), Gaps = 1/307 (0%)

Query: 3   AHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDR 62
           AH+E +QRIAD TTLPHAMHYLS RIAEELDLS LT++L++GK QP  L+ SEKLELWDR
Sbjct: 62  AHFENIQRIADTTTLPHAMHYLSSRIAEELDLSQLTERLMKGKGQPNALTPSEKLELWDR 121

Query: 63  LKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQQ 122
           LKILSFT+LVV+LWA+TM+SLYIR QVNILGRHLY+ TAR LGSSDL ED DLI+RD QQ
Sbjct: 122 LKILSFTRLVVSLWAMTMLSLYIRTQVNILGRHLYLATARVLGSSDLIEDIDLIERDGQQ 181

Query: 123 KFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSP 182
           KFLAS D+ AN G+ A+ S+VQ AA E LKGKQLRD FNT  LHET MQIL++ MS GSP
Sbjct: 182 KFLASSDFFANSGILALSSDVQLAAAEVLKGKQLRDFFNTATLHETIMQILDLLMSRGSP 241

Query: 183 HQWVDFLMPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSFKA 242
           H WV++LMP D RF K    S  D+  ++  TKF++LM E RAV+SSAE+  VV+ S + 
Sbjct: 242 HHWVEYLMPADARFDKRPIDSSSDDIIMTDGTKFEQLMAEARAVISSAEFLGVVEKSLEV 301

Query: 243 AVDALIDEMRVQ-SGGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVELF 301
           +VDAL+ +M  + SGGSL++GMPLA+LVPRV QM P LL EPS NR +Q+I +IP+VE F
Sbjct: 302 SVDALVADMGAESSGGSLMAGMPLARLVPRVAQMGPLLLEEPSRNRFLQIIWSIPQVEGF 361

Query: 302 FTLLYAN 308
           F+ LYAN
Sbjct: 362 FSALYAN 368

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512996|ref|XP_003525200.1| PREDICTED: peroxisome biogenesis protein 3-2-like [Glycine max]

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 186/310 (60%), Positives = 243/310 (78%), Gaps = 4/310 (1%)

Query: 1   MQAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELW 60
           MQAH+E +QR++D T LPHAMH LS RI EELDLS L ++L++GK QP TL+ SEKL+LW
Sbjct: 60  MQAHFENIQRMSDVT-LPHAMHELSCRITEELDLSHLLERLIQGKGQPNTLTQSEKLDLW 118

Query: 61  DRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDD 120
            RLKILSFT++ +++WA TM+SLY +VQVNILGRHLYIDTAR LG SD  E  D++DR+D
Sbjct: 119 SRLKILSFTRMTLSVWATTMLSLYTKVQVNILGRHLYIDTARSLGISDSVESGDVVDRED 178

Query: 121 QQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMG 180
           Q+KFL SVD+L+ +GM A+IS+++AA  E LKGKQL   FN+  LHET MQIL  FMSMG
Sbjct: 179 QKKFLDSVDFLSQHGMPALISDMEAATKEVLKGKQLSTFFNSTTLHETIMQILNTFMSMG 238

Query: 181 SPHQWVDFLMPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSF 240
           +P+ W+ +++P+D+R Y   T SG D+      T+F++LM+E RAVLSSAE+ S+V++S 
Sbjct: 239 TPNSWIKYMIPEDVRPYS--TTSGSDDPVPFDVTEFEQLMIEARAVLSSAEFGSIVEISL 296

Query: 241 KAAVDALIDEMRVQ-SGGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVE 299
           KA VD L++ MR + SGGS+  GMPLA+++P+V QM P LL EPS N+ IQ+I+ I EVE
Sbjct: 297 KAVVDTLVELMRTKFSGGSVAEGMPLARVLPQVAQMCPLLLGEPSKNQFIQIIKNIQEVE 356

Query: 300 LFFTLLYANM 309
           LFFTLLYANM
Sbjct: 357 LFFTLLYANM 366

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449497537|ref|XP_004160430.1| PREDICTED: peroxisome biogenesis protein 3-2-like [Cucumis sativus]

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 186/311 (59%), Positives = 238/311 (76%), Gaps = 2/311 (0%)

Query: 1   MQAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELW 60
           +QAH+E +QRIAD TTLPHA+ +L  RI E+LDLS LT++L+ GK QP TL+ +EKL+LW
Sbjct: 60  IQAHFENIQRIADTTTLPHAIQHLHNRIEEDLDLSHLTERLMMGKGQPNTLTLAEKLDLW 119

Query: 61  DRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDD 120
           + LKILSFTK+V++LWA+T++SLYIRVQVNILGRH+YIDTARGLGSS L E+ADLIDR+D
Sbjct: 120 ENLKILSFTKMVISLWAITVLSLYIRVQVNILGRHMYIDTARGLGSSHLLEEADLIDRED 179

Query: 121 QQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMG 180
           QQKFLA  D+L NYG+ A+I  +Q A  E LK KQLRD+FNT VL ET  QI+++FMS  
Sbjct: 180 QQKFLAISDFLCNYGLNALIPKLQVAVGEVLKRKQLRDVFNTTVLRETTTQIIKIFMSTA 239

Query: 181 SPHQWVDFLMPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSF 240
           SPH W+D++MP D +     T S  D+       KFD+LM+ETRAVL SAE+ ++++ S 
Sbjct: 240 SPHHWLDYVMPGDNQSSITDTLSTDDDAVAPNFNKFDQLMMETRAVLLSAEFGNIMERSL 299

Query: 241 KAAVDALIDEMR--VQSGGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEV 298
           +  VD L++EM   +  G S  SG+PLA+LVPRV QM   LL +P  +R IQ+IR IPEV
Sbjct: 300 EVGVDGLMEEMEASLAGGSSKASGIPLARLVPRVAQMGLLLLEDPIKSRFIQMIRGIPEV 359

Query: 299 ELFFTLLYANM 309
           E+FFTLLYANM
Sbjct: 360 EIFFTLLYANM 370

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439105|ref|XP_004137328.1| PREDICTED: peroxisome biogenesis protein 3-2-like [Cucumis sativus]

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 185/311 (59%), Positives = 237/311 (76%), Gaps = 2/311 (0%)

Query: 1   MQAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELW 60
           +QAH+E +QRIAD TTLPHA+ +L  RI E+LDLS LT++L+ GK QP TL+ +EKL+LW
Sbjct: 60  IQAHFENIQRIADTTTLPHAIQHLHNRIEEDLDLSHLTERLMMGKGQPNTLTLAEKLDLW 119

Query: 61  DRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDD 120
           + LKILSFTK+V++LWA+T++SLYIRVQVNILGRH+YIDTARGLGSS L E+ADLIDR+D
Sbjct: 120 ENLKILSFTKMVISLWAITVLSLYIRVQVNILGRHMYIDTARGLGSSHLLEEADLIDRED 179

Query: 121 QQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMG 180
           QQKFLA  D+L NYG+ A+I  +Q A  E LK KQLRD+FNT VL ET  QI+++FMS  
Sbjct: 180 QQKFLAISDFLCNYGLNALIPKLQVAVGEVLKRKQLRDVFNTTVLRETTTQIIKIFMSTA 239

Query: 181 SPHQWVDFLMPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSF 240
           SPH W+D++MP D +     T S  D+       KFD+LM+ETRAVL S E+ ++++ S 
Sbjct: 240 SPHHWLDYVMPGDNQSSITDTLSTDDDAVAPNFNKFDQLMMETRAVLLSVEFGNIMERSL 299

Query: 241 KAAVDALIDEMR--VQSGGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEV 298
           +  VD L++EM   +  G S  SG+PLA+LVPRV QM   LL +P  +R IQ+IR IPEV
Sbjct: 300 EVGVDGLMEEMEASLAGGSSKASGIPLARLVPRVAQMGLLLLEDPIKSRFIQMIRGIPEV 359

Query: 299 ELFFTLLYANM 309
           E+FFTLLYANM
Sbjct: 360 EIFFTLLYANM 370

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255639582|gb|ACU20085.1| unknown [Glycine max]

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 178/310 (57%), Positives = 239/310 (77%), Gaps = 4/310 (1%)

Query: 1   MQAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELW 60
           MQAH+E +Q+++D T LPHAMH LS RI EELDLS L ++L++GK QP TL+ SEKL+LW
Sbjct: 60  MQAHFENIQKMSDVT-LPHAMHELSCRITEELDLSHLLERLIQGKGQPNTLTQSEKLDLW 118

Query: 61  DRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDD 120
            RLKILSFT++ +++WA TM+SLY +VQVNILGRHLYIDTAR LG SD  E  D++DR+D
Sbjct: 119 SRLKILSFTRMTLSVWATTMLSLYTKVQVNILGRHLYIDTARSLGISDSVESGDVVDRED 178

Query: 121 QQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMG 180
           Q+KFL ++D+L+ +GM A+IS+++AA  E LKGKQL   FN+  LHET MQIL  FMSMG
Sbjct: 179 QKKFLDNIDFLSQHGMPALISDMEAATKEVLKGKQLSTFFNSTTLHETIMQILNSFMSMG 238

Query: 181 SPHQWVDFLMPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSF 240
           +P+ W+ +++P+D+R Y   T  G D+      T+F++LM+E  AVLSSAE+ S+V++S 
Sbjct: 239 TPNSWIKYMIPEDVRPYS--TTHGSDDPVPFDMTEFEQLMMEAWAVLSSAEFGSIVEISL 296

Query: 241 KAAVDALIDEMRVQ-SGGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVE 299
           KA VD L++ M  + SGGS+  G+PLA+++P+V QM P LL EP  N+ IQ+I+ I EVE
Sbjct: 297 KAVVDTLVELMGTKFSGGSVAGGLPLARVLPQVAQMCPLLLEEPRKNQFIQIIKNIQEVE 356

Query: 300 LFFTLLYANM 309
           LFFTLLYANM
Sbjct: 357 LFFTLLYANM 366

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524660|ref|XP_003530946.1| PREDICTED: peroxisome biogenesis protein 3-2-like [Glycine max]

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 178/310 (57%), Positives = 239/310 (77%), Gaps = 4/310 (1%)

Query: 1   MQAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELW 60
           MQAH+E +Q+++D T LPHAMH LS RI EELDLS L ++L++GK QP TL+ SEKL+LW
Sbjct: 60  MQAHFENIQKMSDVT-LPHAMHELSCRITEELDLSHLLERLIQGKGQPNTLTQSEKLDLW 118

Query: 61  DRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDD 120
            RLKILSFT++ +++WA TM+SLY +VQVNILGRHLYIDTAR LG SD  E  D++DR+D
Sbjct: 119 SRLKILSFTRMTLSVWATTMLSLYTKVQVNILGRHLYIDTARSLGISDSVESGDVVDRED 178

Query: 121 QQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMG 180
           Q+KFL ++D+L+ +GM A+IS+++AA  E LKGKQL   FN+  LHET MQIL  FMSMG
Sbjct: 179 QKKFLDNIDFLSQHGMPALISDMEAATKEVLKGKQLSTFFNSTTLHETIMQILNSFMSMG 238

Query: 181 SPHQWVDFLMPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSF 240
           +P+ W+ +++P+D+R Y   T  G D+      T+F++LM+E  AVLSSAE+ S+V++S 
Sbjct: 239 TPNSWIKYMIPEDVRPYS--TTYGSDDPVPFDMTEFEQLMMEAWAVLSSAEFGSIVEISL 296

Query: 241 KAAVDALIDEMRVQ-SGGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVE 299
           KA VD L++ M  + SGGS+  G+PLA+++P+V QM P LL EP  N+ IQ+I+ I EVE
Sbjct: 297 KAVVDTLVELMGTKFSGGSVAGGLPLARVLPQVAQMCPLLLEEPRKNQFIQIIKNIQEVE 356

Query: 300 LFFTLLYANM 309
           LFFTLLYANM
Sbjct: 357 LFFTLLYANM 366

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22330115|ref|NP_683410.1| peroxin 3 [Arabidopsis thaliana] gi|75160618|sp|Q8S9K7.1|PEX32_ARATH RecName: Full=Peroxisome biogenesis protein 3-2; AltName: Full=Peroxin-3-2; Short=AtPEX3-2 gi|18650624|gb|AAL75911.1| At1g48640/F11I4_17 [Arabidopsis thaliana] gi|21700807|gb|AAM70527.1| At1g48640/F11I4_17 [Arabidopsis thaliana] gi|51968824|dbj|BAD43104.1| unknown protein [Arabidopsis thaliana] gi|332194209|gb|AEE32330.1| peroxin 3 [Arabidopsis thaliana]

 Score =  365 bits (936), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 179/311 (57%), Positives = 237/311 (76%), Gaps = 10/311 (3%)

Query: 1   MQAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELW 60
           M+AH+E +Q I D+TTLPHAM +LSIRI+EE+D+S + D+L +GK     LS  EKL+LW
Sbjct: 60  MKAHFESIQMIVDSTTLPHAMQFLSIRISEEIDVSHVMDRLNQGKGM---LSPPEKLQLW 116

Query: 61  DRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDD 120
           D LKILSFT++V++LW+VTM+SLYIRVQVNILGRHLY+DTAR LGSS L E+ DLIDRDD
Sbjct: 117 DELKILSFTRMVLSLWSVTMLSLYIRVQVNILGRHLYVDTARALGSSHLLEEVDLIDRDD 176

Query: 121 QQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMG 180
           +QKFL+S D+L    M ++IS++Q +A+E LKGKQL+D+  T VL ET MQI++VFMS G
Sbjct: 177 EQKFLSSADFLVTNAMPSLISDMQGSAEEVLKGKQLKDVITTRVLQETVMQIVDVFMSTG 236

Query: 181 SPHQWVDFL-MPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMS 239
           SPH WVD+L MPQD +  +  T+   DE      +KF +LMVETR VL S E+T++V++S
Sbjct: 237 SPHHWVDYLMMPQDTKLSR-TTSDSSDE----AVSKFHQLMVETREVLISTEFTNIVEIS 291

Query: 240 FKAAVDALIDEMRVQS-GGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEV 298
            K   D L++EM  Q+  G L +G PLAK++P++ +    + AEPS NR +Q+IR +PEV
Sbjct: 292 LKCFTDVLVEEMETQTEAGGLATGKPLAKVLPQIEKTMNVITAEPSKNRFLQIIRDLPEV 351

Query: 299 ELFFTLLYANM 309
           +LFFTLLYANM
Sbjct: 352 KLFFTLLYANM 362

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	312
TAIR|locus:504956187	400	PEX3 "AT1G48635" [Arabidopsis	0.625	0.487	0.529	7.1e-90
TAIR|locus:2092747	376	PEX3-1 "AT3G18160" [Arabidopsi	0.948	0.787	0.567	1.6e-86
UNIPROTKB|Q60HE1	373	PEX3 "Peroxisomal biogenesis f	0.929	0.777	0.265	1.3e-20
UNIPROTKB|Q9JJK3	373	PEX3 "Peroxisomal biogenesis f	0.926	0.774	0.268	1.7e-20
UNIPROTKB|P56589	373	PEX3 "Peroxisomal biogenesis f	0.929	0.777	0.265	2.9e-20
UNIPROTKB|A6H7C2	373	PEX3 "Peroxisomal biogenesis f	0.929	0.777	0.259	6.7e-20
UNIPROTKB|F1N5H3	373	PEX3 "Peroxisomal biogenesis f	0.929	0.777	0.259	6.7e-20
UNIPROTKB|E2R9C7	373	PEX3 "Uncharacterized protein"	0.929	0.777	0.259	1.9e-19
UNIPROTKB|E1BS88	371	PEX3 "Uncharacterized protein"	0.929	0.781	0.264	2.5e-19
MGI|MGI:1929646	372	Pex3 "peroxisomal biogenesis f	0.916	0.768	0.269	2.5e-19

TAIR|locus:504956187 PEX3 "AT1G48635" [Arabidopsis thaliana (taxid:3702)]

 Score = 541 (195.5 bits), Expect = 7.1e-90, Sum P(2) = 7.1e-90
 Identities = 107/202 (52%), Positives = 146/202 (72%)

Query:   110 PEDADLIDRDDQQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETF 169
             PE+ DLIDRDD+QKFL+S D+L    M ++IS++Q +A+E LKGKQL+D+  T VL ET 
Sbjct:   202 PEEVDLIDRDDEQKFLSSADFLVTNAMPSLISDMQGSAEEVLKGKQLKDVITTRVLQETV 261

Query:   170 MQILEVFMSMGSPHQWVDFLM-PQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLS 228
             MQI++VFMS GSPH WVD+LM PQD +  +  T+   DE      +KF +LMVETR VL 
Sbjct:   262 MQIVDVFMSTGSPHHWVDYLMMPQDTKLSR-TTSDSSDEAV----SKFHQLMVETREVLI 316

Query:   229 SAEYTSVVDMSFKAAVDALIDEMRVQS-GGSLISGMPLAKLVPRVVQMSPSLLAEPSNNR 287
             S E+T++V++S K   D L++EM  Q+  G L +G PLAK++P++ +    + AEPS NR
Sbjct:   317 STEFTNIVEISLKCFTDVLVEEMETQTEAGGLATGKPLAKVLPQIEKTMNVITAEPSKNR 376

Query:   288 IIQVIRTIPEVELFFTLLYANM 309
              +Q+IR +PEV+LFFTLLYANM
Sbjct:   377 FLQIIRDLPEVKLFFTLLYANM 398

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005777 "peroxisome" evidence=ISS

GO:0005779 "integral to peroxisomal membrane" evidence=IEA

GO:0007031 "peroxisome organization" evidence=IEA;IMP

TAIR|locus:2092747 PEX3-1 "AT3G18160" [Arabidopsis thaliana (taxid:3702)]

 Score = 865 (309.6 bits), Expect = 1.6e-86, P = 1.6e-86
 Identities = 176/310 (56%), Positives = 229/310 (73%)

Query:     1 MQAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELW 60
             M+AH++ +Q IAD TTLPHA+H+LS R+ EE+D+S + DKL +GK     L  SEKL+LW
Sbjct:    78 MKAHFDNIQMIADTTTLPHAIHHLSSRVVEEIDVSSIMDKLSKGKG---ILIPSEKLQLW 134

Query:    61 DRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDD 120
             + LKILSFT++V++LW+VTM+SLYIRVQVNILGRHLYIDTARGLGSS L ++ DLI+RDD
Sbjct:   135 NELKILSFTRMVLSLWSVTMLSLYIRVQVNILGRHLYIDTARGLGSSHLLDELDLIERDD 194

Query:   121 QQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMG 180
             +QKFL S D+LA  GM ++ISN+Q A  E LKGKQL+D+  T  L ET M+IL+VFMS G
Sbjct:   195 EQKFLTSADFLATSGMPSLISNMQNAVKEVLKGKQLKDVLTTSALRETVMRILDVFMSTG 254

Query:   181 SPHQWVDFLM-PQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMS 239
             SPH WVD+LM  QD         S  D T     TKF  L+ ETR VL+S ++++V ++S
Sbjct:   255 SPHHWVDYLMMSQDAT----TDVSSSDATV----TKFHLLITETREVLTSNDFSNVAEIS 306

Query:   240 FKAAVDALIDEMRVQSGGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVE 299
              K    AL++EM  Q+G  L +GM LAKL+P++ +  P + AEP  NR +Q+IR +PEV+
Sbjct:   307 LKCCAVALVEEMETQTG--LATGMQLAKLLPQIEKTMPEISAEPEKNRFLQLIRDLPEVK 364

Query:   300 LFFTLLYANM 309
             LFFTLLYANM
Sbjct:   365 LFFTLLYANM 374

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005777 "peroxisome" evidence=ISS

GO:0005779 "integral to peroxisomal membrane" evidence=IEA

GO:0007031 "peroxisome organization" evidence=IEA;IMP

UNIPROTKB|Q60HE1 PEX3 "Peroxisomal biogenesis factor 3" [Macaca fascicularis (taxid:9541)]

 Score = 244 (91.0 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 88/331 (26%), Positives = 166/331 (50%)

Query:     2 QAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWD 61
             Q H+E  QR  + T L   +  L   + ++L+   LT  L   K +P     S KLE+W+
Sbjct:    55 QYHFESNQRTCNMTVLS-MLPTLREALMQQLNSESLTALL---KNRP-----SNKLEIWE 105

Query:    62 RLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQ 121
              LKI+SFT+ +VA+++  M+ + +RVQ+NI+G ++Y+D A  +G +       L   D Q
Sbjct:   106 DLKIISFTRSIVAVYSTCMLVVLLRVQLNIIGGYIYLDNA-AVGKNGT---TILAPPDVQ 161

Query:   122 QKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGS 181
             Q++L+S+ +L   G+  +I+ ++ A  + L    L+   + + L +   +I  + +    
Sbjct:   162 QQYLSSIQHLLGDGLTELITVIKQAVQKILGSVSLKHSLSLLDLEQKLKEIRNL-VEQHK 220

Query:   182 PHQWVDFLMPQDIRFYKLVTASGHDETTLS----GATKFD----ELMVETRAVLSSAEYT 233
                W++    + +  + ++     +ET L+    G +  D    +L+ ETR +L S +++
Sbjct:   221 SSSWINKDGSKSLLCHYMMP---DEETPLAVQACGLSPRDITTIKLLNETRDMLESPDFS 277

Query:   234 SVVDMSFKAAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRVVQMSPSLL 280
             +V++         L+D M          +Q G S+ S     +PLAK++P V     S+ 
Sbjct:   278 TVLNTCLNRGFSRLLDNMAEFFRPTEQDLQHGNSMNSLSSVSLPLAKIIPIVNGQIHSVC 337

Query:   281 AE-PSNNRIIQVIRTIPEVELFFTLLYANMS 310
             +E PS+   +Q + T+ +V+ F   +Y   S
Sbjct:   338 SETPSH--FVQDLLTMEQVKDFAANVYEAFS 366

GO:0005777 "peroxisome" evidence=ISS

GO:0005779 "integral to peroxisomal membrane" evidence=ISS

GO:0007031 "peroxisome organization" evidence=ISS

GO:0045046 "protein import into peroxisome membrane" evidence=ISS

UNIPROTKB|Q9JJK3 PEX3 "Peroxisomal biogenesis factor 3" [Cricetulus longicaudatus (taxid:10030)]

 Score = 243 (90.6 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 89/332 (26%), Positives = 161/332 (48%)

Query:     2 QAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWD 61
             Q H+E  QR  + T L   +  L   + ++L+   LT  L   K +P     S KLE+W+
Sbjct:    55 QYHFESNQRTCNMTVLS-MLPTLREALMQQLNSESLTALL---KNRP-----SNKLEIWE 105

Query:    62 RLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQ 121
              LKI+SFT+ +VA+++  M+ + +RVQ+NI+G ++Y+D A  +G +       L   D Q
Sbjct:   106 DLKIISFTRSIVAVYSTCMLVVLLRVQLNIIGGYIYLDNAT-VGKNGTTV---LAPPDVQ 161

Query:   122 QKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGS 181
             Q++L+S+ +L   G+  +++ ++ A    L    L+   + + L +   +I  +     S
Sbjct:   162 QQYLSSIQHLLGDGLTELVTVIKQAVQRILGSVSLKHSLSLLDLEQKLKEIRILVEQHRS 221

Query:   182 PHQWVDFLMPQDIRFYKLVTASGHDETTLSGATKFD---------ELMVETRAVLSSAEY 232
             P  W+D    +D+    L      DE T   A  +          +L+ ETR +L S ++
Sbjct:   222 P-SWID----KDVSKSSLCQYMMPDEETPLAAQAYGLSPRDITTIKLLNETRDMLESPDF 276

Query:   233 TSVVDMSFKAAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRVVQMSPSL 279
             ++V++         L+D M          +Q G S+ S     +PLAK++P V     S+
Sbjct:   277 STVLNTCLNRGFSRLLDNMAEFFRPTEQDLQHGNSINSLSSVSLPLAKIIPIVNGQIHSV 336

Query:   280 LAE-PSNNRIIQVIRTIPEVELFFTLLYANMS 310
              ++ PS+   +Q +  + +V+ F   +Y   S
Sbjct:   337 CSDTPSH--FVQDLLMMEQVKDFAANVYEAFS 366

GO:0005777 "peroxisome" evidence=ISS

GO:0005779 "integral to peroxisomal membrane" evidence=ISS

GO:0007031 "peroxisome organization" evidence=ISS

GO:0045046 "protein import into peroxisome membrane" evidence=ISS

UNIPROTKB|P56589 PEX3 "Peroxisomal biogenesis factor 3" [Homo sapiens (taxid:9606)]

 Score = 241 (89.9 bits), Expect = 2.9e-20, P = 2.9e-20
 Identities = 88/331 (26%), Positives = 165/331 (49%)

Query:     2 QAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWD 61
             Q H+E  QR  + T L   +  L   + ++L+   LT  L   K +P     S KLE+W+
Sbjct:    55 QYHFESNQRTCNMTVLS-MLPTLREALMQQLNSESLTALL---KNRP-----SNKLEIWE 105

Query:    62 RLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQ 121
              LKI+SFT+  VA+++  M+ + +RVQ+NI+G ++Y+D A  +G +       L   D Q
Sbjct:   106 DLKIISFTRSTVAVYSTCMLVVLLRVQLNIIGGYIYLDNA-AVGKNGT---TILAPPDVQ 161

Query:   122 QKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGS 181
             Q++L+S+ +L   G+  +I+ ++ A  + L    L+   + + L +   +I  + +    
Sbjct:   162 QQYLSSIQHLLGDGLTELITVIKQAVQKVLGSVSLKHSLSLLDLEQKLKEIRNL-VEQHK 220

Query:   182 PHQWVDFLMPQDIRFYKLVTASGHDETTLS----GATKFD----ELMVETRAVLSSAEYT 233
                W++    + +  + ++     +ET L+    G +  D    +L+ ETR +L S +++
Sbjct:   221 SSSWINKDGSKPLLCHYMMP---DEETPLAVQACGLSPRDITTIKLLNETRDMLESPDFS 277

Query:   234 SVVDMSFKAAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRVVQMSPSLL 280
             +V++         L+D M          +Q G S+ S     +PLAK++P V     S+ 
Sbjct:   278 TVLNTCLNRGFSRLLDNMAEFFRPTEQDLQHGNSMNSLSSVSLPLAKIIPIVNGQIHSVC 337

Query:   281 AE-PSNNRIIQVIRTIPEVELFFTLLYANMS 310
             +E PS+   +Q + T+ +V+ F   +Y   S
Sbjct:   338 SETPSH--FVQDLLTMEQVKDFAANVYEAFS 366

GO:0005829 "cytosol" evidence=IEA

GO:0016557 "peroxisome membrane biogenesis" evidence=IEA

GO:0005779 "integral to peroxisomal membrane" evidence=IDA

GO:0007031 "peroxisome organization" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005777 "peroxisome" evidence=IDA;IMP

GO:0045046 "protein import into peroxisome membrane" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0008289 "lipid binding" evidence=IDA

GO:0046983 "protein dimerization activity" evidence=IDA

GO:0005778 "peroxisomal membrane" evidence=IDA;TAS

GO:0043234 "protein complex" evidence=IDA

GO:0032994 "protein-lipid complex" evidence=IDA

GO:0055085 "transmembrane transport" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|A6H7C2 PEX3 "Peroxisomal biogenesis factor 3" [Bos taurus (taxid:9913)]

 Score = 238 (88.8 bits), Expect = 6.7e-20, P = 6.7e-20
 Identities = 86/331 (25%), Positives = 166/331 (50%)

Query:     2 QAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWD 61
             Q H+E  QR  + T L   +  L   + ++L+   LT  L   K +P     S KLE+W+
Sbjct:    55 QYHFESNQRTCNMTVLS-MLPTLREALMQQLNSESLTALL---KTRP-----SNKLEIWE 105

Query:    62 RLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQ 121
              LKI+SFT+ +VA+++  M+ + +RVQ+NI+G ++Y+D A  +G +       L   D Q
Sbjct:   106 DLKIISFTRSIVAVYSTCMLVVLLRVQLNIIGGYIYLDNA-AVGKNGTTV---LAPPDVQ 161

Query:   122 QKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGS 181
             Q++L+S+ +L   G+  +I+ ++ A  + L    L+   + + L +   +I ++ +    
Sbjct:   162 QQYLSSIQHLLGDGLTELITVIKQAVQKILGSVSLKHSLSLLDLEQKLKEIRDL-VEQHK 220

Query:   182 PHQWVDFLMPQDIRFYKLVTASGHDETTLS----GATKFD----ELMVETRAVLSSAEYT 233
                W++    + +  + ++     +ET L+    G +  D    +L+ ETR +L S +++
Sbjct:   221 SSSWINNDGSKSLLCHYMMP---DEETPLAVQACGLSPRDVTTIKLLNETRDMLESPDFS 277

Query:   234 SVVDMSFKAAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRVVQMSPSLL 280
             +V++         L+D M          +Q G S+ S     +PLAK++P +     S+ 
Sbjct:   278 TVLNTCLSRGFSRLLDNMAEFFRPTEQDLQHGNSINSLSSVSLPLAKIIPIINGQIHSVC 337

Query:   281 AE-PSNNRIIQVIRTIPEVELFFTLLYANMS 310
             +E PS+   +Q +  + +V+ F   +Y   S
Sbjct:   338 SETPSH--FVQDLLMMEQVKDFAANVYEAFS 366

GO:0007031 "peroxisome organization" evidence=IEA

GO:0005779 "integral to peroxisomal membrane" evidence=IEA

UNIPROTKB|F1N5H3 PEX3 "Peroxisomal biogenesis factor 3" [Bos taurus (taxid:9913)]

 Score = 238 (88.8 bits), Expect = 6.7e-20, P = 6.7e-20
 Identities = 86/331 (25%), Positives = 166/331 (50%)

Query:     2 QAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWD 61
             Q H+E  QR  + T L   +  L   + ++L+   LT  L   K +P     S KLE+W+
Sbjct:    55 QYHFESNQRTCNMTVLS-MLPTLREALMQQLNSESLTALL---KTRP-----SNKLEIWE 105

Query:    62 RLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQ 121
              LKI+SFT+ +VA+++  M+ + +RVQ+NI+G ++Y+D A  +G +       L   D Q
Sbjct:   106 DLKIISFTRSIVAVYSTCMLVVLLRVQLNIIGGYIYLDNA-AVGKNGTTV---LAPPDVQ 161

Query:   122 QKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGS 181
             Q++L+S+ +L   G+  +I+ ++ A  + L    L+   + + L +   +I ++ +    
Sbjct:   162 QQYLSSIQHLLGDGLTELITVIKQAVQKILGSVSLKHSLSLLDLEQKLKEIRDL-VEQHK 220

Query:   182 PHQWVDFLMPQDIRFYKLVTASGHDETTLS----GATKFD----ELMVETRAVLSSAEYT 233
                W++    + +  + ++     +ET L+    G +  D    +L+ ETR +L S +++
Sbjct:   221 SSSWINNDGSKSLLCHYMMP---DEETPLAVQACGLSPRDVTTIKLLNETRDMLESPDFS 277

Query:   234 SVVDMSFKAAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRVVQMSPSLL 280
             +V++         L+D M          +Q G S+ S     +PLAK++P +     S+ 
Sbjct:   278 TVLNTCLSRGFSRLLDNMAEFFRPTEQDLQHGNSINSLSSVSLPLAKIIPIINGQIHSVC 337

Query:   281 AE-PSNNRIIQVIRTIPEVELFFTLLYANMS 310
             +E PS+   +Q +  + +V+ F   +Y   S
Sbjct:   338 SETPSH--FVQDLLMMEQVKDFAANVYEAFS 366

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0045046 "protein import into peroxisome membrane" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0032994 "protein-lipid complex" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005779 "integral to peroxisomal membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E2R9C7 PEX3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 234 (87.4 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 86/331 (25%), Positives = 164/331 (49%)

Query:     2 QAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWD 61
             Q H+E  QR  + T L   +  L   + ++L+   LT  L   K +P     S KLE+W+
Sbjct:    55 QYHFESNQRTCNMTVLS-MLPTLREALMQQLNSESLTALL---KNRP-----SNKLEIWE 105

Query:    62 RLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQ 121
              LKI+SFT+ +VA+++  M+ + +RVQ+NI+G ++Y+D A  +G +       L   D Q
Sbjct:   106 DLKIISFTRSIVAVYSTCMLVVLLRVQLNIIGGYIYLDNA-AVGKNGTTV---LAPPDVQ 161

Query:   122 QKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGS 181
             Q++L+S+ +L   G+  +I+ ++ A  + L    L+   + + L +   +I  + +    
Sbjct:   162 QQYLSSIQHLLGDGLTELITVIKQAVQKILGSVSLKHSLSLLDLEQKLKEIRNL-VEQHK 220

Query:   182 PHQWVDFLMPQDIRFYKLVTASGHDETTLS----GATKFD----ELMVETRAVLSSAEYT 233
                W++    + +  + ++     +ET L+    G +  D    +L+ ETR +L S +++
Sbjct:   221 SSSWINKDESKSLLCHYMMP---DEETPLAVQACGLSPRDVTTIKLLNETRDMLESPDFS 277

Query:   234 SVVDMSFKAAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRVVQMSPSLL 280
             +V++         L+D M          +Q   S+ S     +PLAK++P V     S+ 
Sbjct:   278 TVLNTCLNRGFSRLLDNMAEFFRPTEQDLQHSNSMSSLSSVSLPLAKIIPIVNGQIHSVC 337

Query:   281 AE-PSNNRIIQVIRTIPEVELFFTLLYANMS 310
             +E PS+   +Q +  + +V+ F   +Y   S
Sbjct:   338 SETPSH--FVQDLLMMEQVKDFAANVYEAFS 366

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0045046 "protein import into peroxisome membrane" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0032994 "protein-lipid complex" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005779 "integral to peroxisomal membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E1BS88 PEX3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 233 (87.1 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 87/329 (26%), Positives = 159/329 (48%)

Query:     2 QAHYEEVQRIADAT-TLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELW 60
             Q H+E  QR  + T T+   +  L   +  +L+   LT  L   K +P     + KLE+W
Sbjct:    55 QYHFESNQRTCNMTVTVLSMLPTLRDALMHQLNSESLTSLL---KNRP-----ANKLEIW 106

Query:    61 DRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDD 120
             + LKI+SFT+ +VA+++  M+ + +RVQ+NI+G ++Y+D A    +   P    L   + 
Sbjct:   107 EDLKIISFTRSIVAVYSTCMLVVLLRVQLNIIGGYIYLDNAAVCKNGTTP----LAPPEV 162

Query:   121 QQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMG 180
             QQ++L+S+ +L   G+  +I+ V+ A  +      L+   + + L +   +I +V     
Sbjct:   163 QQQYLSSIQHLLGDGLTELITIVKQAVHKVFGSISLKHALSLLELEQKLKEIRDVV---- 218

Query:   181 SPHQWVDFLMPQD-IRFYKLVTASGHDETTLSGATKFD----ELMVETRAVLSSAEYTSV 235
               H+  D + P   +  Y +        T   G T+ D    +L+ ETR +L S ++++V
Sbjct:   219 -EHRDSDQVAPYSPLCHYLMPDEENPLATQACGLTERDTATIKLLNETRDMLESPDFSTV 277

Query:   236 VDMSFKAAVDALIDEMRV----------QSGG--SLIS-GMPLAKLVPRVVQMSPSLLAE 282
             +          L+D M            Q+G   SL S  +PLAK++P +     S+ +E
Sbjct:   278 LSTCLNRGFSQLLDNMAEFFRPTEQDFSQNGSVNSLSSVSLPLAKIIPIINGQIHSICSE 337

Query:   283 -PSNNRIIQVIRTIPEVELFFTLLYANMS 310
              PS+   +Q +  + +++ F   +Y   S
Sbjct:   338 TPSH--FVQDLLMMEQMKDFAANVYEAFS 364

GO:0005634 "nucleus" evidence=IEA

GO:0005779 "integral to peroxisomal membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0032994 "protein-lipid complex" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0045046 "protein import into peroxisome membrane" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

MGI|MGI:1929646 Pex3 "peroxisomal biogenesis factor 3" [Mus musculus (taxid:10090)]

 Score = 233 (87.1 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 90/334 (26%), Positives = 161/334 (48%)

Query:     2 QAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWD 61
             Q H+E  QR  + T L   +  L   + ++L+   LT  L   K +P     S KLE+W+
Sbjct:    55 QYHFESNQRTCNMTVLS-MLPTLREALMQQLNSESLTALL---KSRP-----SNKLEIWE 105

Query:    62 RLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQ 121
              LKI+SFT+ +VA+++  M+ + +RVQ+NI+G ++Y+D A  +G +       L   D Q
Sbjct:   106 DLKIISFTRSIVAVYSTCMLVVLLRVQLNIIGGYIYLDNAT-VGKNGTTV---LAPPDVQ 161

Query:   122 QKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGS 181
             Q++L+S+ +L   G+  +++ ++ A    L    L+   + + L +   +I  + +    
Sbjct:   162 QQYLSSIQHLLGDGLTELVTVIKQAVQRILGSVSLKHSLSLLDLEQKLKEI-RILVEQ-- 218

Query:   182 PHQ--WVDFLMPQDIRFYKLVTASGHDETTLSGATKFD---------ELMVETRAVLSSA 230
              HQ  W D    +D+    L      DE T   A  +          +L+ ETR +L S 
Sbjct:   219 -HQSSWND----KDVSRSSLCQYMMPDEETPLAAQAYGLSHRDITTIKLLNETRDMLESP 273

Query:   231 EYTSVVDMSFKAAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRVVQMSP 277
             ++++V++         L+D M          +Q G S+ S     +PLAK++P V     
Sbjct:   274 DFSTVLNTCLNRGFSRLLDNMAEFFRPTEQDLQHGNSINSLSSVSLPLAKIIPIVNGQIH 333

Query:   278 SLLAE-PSNNRIIQVIRTIPEVELFFTLLYANMS 310
             S+ +E PS+   +Q +  + +V+ F   +Y   S
Sbjct:   334 SVCSETPSH--FVQDLLMMEQVKDFAANVYEAFS 365

GO:0005777 "peroxisome" evidence=ISO

GO:0005778 "peroxisomal membrane" evidence=ISO

GO:0005779 "integral to peroxisomal membrane" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0007031 "peroxisome organization" evidence=ISO

GO:0008289 "lipid binding" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016557 "peroxisome membrane biogenesis" evidence=ISO

GO:0032994 "protein-lipid complex" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0045046 "protein import into peroxisome membrane" evidence=ISO

GO:0046983 "protein dimerization activity" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8S9K7	PEX32_ARATH	No assigned EC number	0.5755	0.9647	0.8269	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_XV0112 hypothetical protein (375 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	312
pfam04882	399	pfam04882, Peroxin-3, Peroxin-3	4e-60

>gnl|CDD|218308 pfam04882, Peroxin-3, Peroxin-3

 Score =  196 bits (501), Expect = 4e-60
 Identities = 92/356 (25%), Positives = 158/356 (44%), Gaps = 56/356 (15%)

Query: 1   MQAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGK--------------- 45
           ++  +E+ QR  + T L   +  LS  I E L +  +T+KL + K               
Sbjct: 53  IKRRFEQTQRDCNYTVLAL-LPTLSEPILEALPVEEITEKLQQKKAESAARTGENSDSEL 111

Query: 46  ----------EQPYTLSSSEKLELWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRH 95
                       P   S   KLELW+ LKI S T+L+  +++++M++L  R+Q+NILGR 
Sbjct: 112 TSASASEADESSPSPYSPKSKLELWNELKIKSITRLITLVYSLSMLTLLTRLQLNILGRR 171

Query: 96  LYIDTARGLGSSDLPEDADLI---DRDDQQKFLASVDYLANYGMQAMISNVQAAADEALK 152
            Y+D+A  L S    E++DLI   D + +Q +L+   +L N G   +I  V+ A +E   
Sbjct: 172 SYLDSAISLASGTENEESDLISGSDYETEQAYLSLSWWLLNKGWLDLIDRVEKAVEEVFG 231

Query: 153 GKQLRDIFNTVVLHETFMQILEVFMSMGSPHQ--WVDFLMPQDIRFYKLVTASGHDETTL 210
           G   +D  +     E   +I  +  S     +   + +L+P D         S  D    
Sbjct: 232 GINPKDELSLAEFEELLKEIRNLVNSSDENKERSILKYLLPND----LPTPLSSLDIND- 286

Query: 211 SGATKFDELMVETRAVLSSAEYTSV----VDMSFKAAVDALIDEMRVQSGGSLISG---- 262
              +K  +L+ ETR +L S +++ V    VD  F   +D L + +  +S  +        
Sbjct: 287 ---SKLRKLLNETRDILESPDFSDVLESLVDEGFSTLLDNLAESLAFKSLPTSQDSLNVE 343

Query: 263 ---------MPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVELFFTLLYANM 309
                      LAKL+P + +    +L   S N  +Q + ++ E++ F   +Y+N 
Sbjct: 344 SIVDLPSVKFKLAKLLPVINRQIHVILNNDSPNEYLQALNSVEELKDFSASVYSNF 399

Peroxin-3 is a peroxisomal protein. It is thought to be involve in membrane vesicle assembly prior to the translocation of matrix proteins. Length = 399

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	312
PF04882	432	Peroxin-3: Peroxin-3; InterPro: IPR006966 Peroxin	100.0
KOG4444	359	consensus Peroxisomal assembly protein PEX3 [Cell	100.0

>PF04882 Peroxin-3: Peroxin-3; InterPro: IPR006966 Peroxin 3 (Pex3p), also known as Peroxisomal biogenesis factor 3, has been identified and characterised as a peroxisomal membrane protein in yeasts and mammals []

Probab=100.00  E-value=4.5e-82  Score=621.81  Aligned_cols=308  Identities=32%  Similarity=0.500  Sum_probs=242.7

Q ss_pred             ChhhHHHHhhhhHHhHHHHHHHHHHHHHHHhcCchHHHHHHhcCCCCCC-------------------------------
Q 021405            1 MQAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPY-------------------------------   49 (312)
Q Consensus         1 l~~~Fe~~Q~~c~~T~l~~llp~L~~~i~~~ld~e~i~~~Lk~~K~~~~-------------------------------   49 (312)
                      +||||||||+||++|++ ++||+|+++|++++|+|+||++||++|.++.                               
T Consensus        53 ~~r~Feq~q~~c~~tv~-~llp~l~~~i~~~ld~e~i~~~L~~~k~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  131 (432)
T PF04882_consen   53 LRRRFEQTQRDCDFTVL-ALLPTLSERILEELDVEEITEELKQKKAQRKARQAAQSDSESSDSELTSDNLSSASEANESS  131 (432)
T ss_dssp             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHS-HHHHHHHHCT-------------------------------------
T ss_pred             ccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            58999999999999997 8999999999999999999999999987432                               


Q ss_pred             ----CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCC----------CCCCC
Q 021405           50 ----TLSSSEKLELWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLP----------EDADL  115 (312)
Q Consensus        50 ----~l~~~~K~eLW~eLKi~sftR~~t~iY~~slL~ll~rvQLNiLgr~~Yl~s~~~~~~~~~~----------~~~~~  115 (312)
                          ..++++|+||||||||+||||++|++|++|||+|+||+||||||||.|++|+...+++...          .....
T Consensus       132 ~~~~~~~~~~K~eLW~eLKi~sftR~vt~iY~~slL~LltRvQLNILGR~~Yl~S~~~~a~~~~~~~~~~~~~~~~~~~~  211 (432)
T PF04882_consen  132 SKSSPLSPKSKLELWNELKIKSFTRTVTLIYALSLLTLLTRVQLNILGRRLYLDSVISLASEQENSNSSLISLESSSARG  211 (432)
T ss_dssp             --------SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----HHTSSSSS---SS---------
T ss_pred             cccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcccccccccccccc
Confidence                1348999999999999999999999999999999999999999999999998765433221          11234


Q ss_pred             CChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCcccCHHHHHHHHHHHHHHHhc--C--C--Ccccccccc
Q 021405          116 IDRDDQQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMS--M--G--SPHQWVDFL  189 (312)
Q Consensus       116 ~~~~~eq~fLs~s~~ll~~G~~~l~~~V~~~V~~v~~~~~lk~~ls~~~l~~l~~~i~~~~~~--~--~--~~~~~~~~L  189 (312)
                      .+.++||+||++||||+|+||.+++++|+++|+++|++++||+.+|++||++++++||..++.  .  +  ..++|++||
T Consensus       212 ~~~~~eq~fLs~swwLL~~Gw~~l~~~Ve~aV~~vf~~~~lkd~lsl~e~~~ll~~Ir~~ve~~~~~~~~~~~~~~~~~L  291 (432)
T PF04882_consen  212 VDYETEQKFLSLSWWLLNRGWKELIERVEEAVEEVFGSISLKDELSLEEFSELLWQIRKRVESSSDTSDSRPRSNWLSYL  291 (432)
T ss_dssp             --HHHHHHHHGGGHHHHTHHHHHHHHHHHHHHHHHHTTS-TT-EEEHHHHHHHHHHHHHHHHT------------CHHHC
T ss_pred             ccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcCcccCHHHHHHHHHHHHHHHHhhcCCccccchhhHHHhh
Confidence            568999999999999999999999999999999999999999999999999999999999987  1  1  246799999


Q ss_pred             cccchh-hhhhhhcC---CCCCcccCchhHHHHHHHHHHHhhcCHhHHHHHHHHHHHHHHHHHHHHHHhcCC--------
Q 021405          190 MPQDIR-FYKLVTAS---GHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSFKAAVDALIDEMRVQSGG--------  257 (312)
Q Consensus       190 lP~~~~-~~~~~~~~---~~~~~~~~~~~~l~~Ll~ET~d~leS~~f~~Vl~~~l~~~f~~l~~~~~~~~~~--------  257 (312)
                      ||+... .+++.+++   ++....+.+++.|++|++||+|+||||+|.+|++.|+|++|+.+++++.+.+++        
T Consensus       292 LP~~~~e~~~L~~~~~~~~~~~~~~~~~~~l~~Ll~ET~d~leS~~f~~Vl~~~l~~~f~~l~d~l~~~~~~~~~~~~~~  371 (432)
T PF04882_consen  292 LPPEEEEDFVLQQTGDNPSSLSSLPQDDSILRQLLDETRDVLESPDFSHVLESCLDEGFSTLMDNLEASFGSKSPSSPQS  371 (432)
T ss_dssp             S----TTS-GGGTS-------TT--CCHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHCCG----------
T ss_pred             CCCCchhHHHHHhcccccccccCCCCCcHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCc
Confidence            996543 45555543   222234578899999999999999999999999999999999999999876622        


Q ss_pred             ---------CCCCCCcchhhhhhhhhhccccccCCCchHHHHHHhChhhHHHHHHHHhccC
Q 021405          258 ---------SLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVELFFTLLYANM  309 (312)
Q Consensus       258 ---------~~~~~~~LAkllp~v~~~~~~l~~~~~~n~yl~~l~~~~el~~fsA~vYs~~  309 (312)
                               .++.++||||+||++++|+|.++.++.||+|++.|.++++|++|||+||+||
T Consensus       372 ~~~~~~~~~~~~~~~~LAklLp~l~~q~~~i~~~~~~N~yl~~l~~v~eL~~fsA~VYsnF  432 (432)
T PF04882_consen  372 DLDQEEEVDIPKKKIPLAKLLPILNRQSHVILNGPMPNEYLQRLNSVPELEDFSASVYSNF  432 (432)
T ss_dssp             -------------EEEHHHHHHHHHTTHHHHT-TT-TTCHHHHHHT-HHHHHHHHHHHHHH
T ss_pred             cCCcccccCCCCCcchHHHHHHHHHHHHHHHhcCCChhHHHHHHHccHHHHHHhHHHhhcC
Confidence                     1235799999999999999999987569999999999999999999999997

Two putative peroxisomal membrane-bound Pex3p homologues have also been found in Arabidopsis thaliana []. They possess a membrane peroxisomal targeting signal. Pex3p is an integral membrane protein of peroxisomes, exposing its N- and C-terminal parts to the cytosol []. Peroxin is involved in peroxisome biosynthesis and integrity; it assembles membrane vesicles before the matrix proteins are translocated. In humans, defects in PEX3 are the cause of peroxisome biogenesis disorders [], which include Zellweger syndrome (ZWS), neonatal adrenoleukodystrophy (NALD), infantile Refsum disease (IRD), and classical rhizomelic chondrodysplasia punctata (RCDP). These are peroxisomal disorders that are the result of proteins failing to be imported into the peroxisome.; GO: 0007031 peroxisome organization, 0005779 integral to peroxisomal membrane; PDB: 3MK4_A 3AJB_A.

>KOG4444 consensus Peroxisomal assembly protein PEX3 [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.5e-66  Score=473.24  Aligned_cols=294  Identities=30%  Similarity=0.478  Sum_probs=259.6

Q ss_pred             ChhhHHHHhhhhHHhHHHHHHHHHHHHHHHhcCchHHHHHHhcCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021405            1 MQAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKILSFTKLVVALWAVTM   80 (312)
Q Consensus         1 l~~~Fe~~Q~~c~~T~l~~llp~L~~~i~~~ld~e~i~~~Lk~~K~~~~~l~~~~K~eLW~eLKi~sftR~~t~iY~~sl   80 (312)
                      +++||||||++||+||+ .++|+++.+|.+++|+|+|+++||++ .   .++|++|+||||||||.||||+++.+|++||
T Consensus        54 rk~hFEStqrtcd~til-~llp~l~~~i~eeldvdsi~eqLkqk-~---~Ltp~~KleLWeeLKI~sftrl~~~vysvsm  128 (359)
T KOG4444|consen   54 RKYHFESTQRTCDQTIL-ELLPVLRMAINEELDVDSIVEQLKQK-N---QLTPKNKLELWEELKIKSFTRLVTVVYSVSM  128 (359)
T ss_pred             HHHHHHhhhhHHHHHHH-HHHHHHHHHHHHHcCHHHHHHHHhhC-C---CCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            37899999999999998 69999999999999999999999994 3   3789999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCccc
Q 021405           81 VSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIF  160 (312)
Q Consensus        81 L~ll~rvQLNiLgr~~Yl~s~~~~~~~~~~~~~~~~~~~~eq~fLs~s~~ll~~G~~~l~~~V~~~V~~v~~~~~lk~~l  160 (312)
                      |.+++|+||||||||.|+|+++..+.      .+.++.+.||+|||.+.||..+|+..++..++.+|.+|+++.++|+.+
T Consensus       129 Lvl~lRvQlNILgr~iYlD~a~~l~~------v~l~~~dlqqqfls~i~~l~tdam~~la~~ik~~~qeVlk~~qlk~sl  202 (359)
T KOG4444|consen  129 LVLLLRVQLNILGRYIYLDSAIKLKM------VQLNCNDLQQQFLSSITHLWTDAMVMLAKKIKKEVQEVLKNEQLKLSL  202 (359)
T ss_pred             HHHHHHHHHHHhcchhhHHHHHhhcc------cccCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccHHHHh
Confidence            99999999999999999999998542      345678999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhcCCCcccccc-cccccchhhhhhhhcCCCCCcccCchhHHHHHHHHHHHhhcCHhHHHHHHHH
Q 021405          161 NTVVLHETFMQILEVFMSMGSPHQWVD-FLMPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMS  239 (312)
Q Consensus       161 s~~~l~~l~~~i~~~~~~~~~~~~~~~-~LlP~~~~~~~~~~~~~~~~~~~~~~~~l~~Ll~ET~d~leS~~f~~Vl~~~  239 (312)
                      |+-++++.+++|++.++..++|++|.+ |++|+.+.......++..|    .+.+...+|.-||+++|+|++|+.|++.|
T Consensus       203 S~~~Leq~~~qi~n~~e~~~dp~h~~dkylm~~qnt~ls~~as~~~d----~dvst~f~l~~Etrq~L~st~~stvle~s  278 (359)
T KOG4444|consen  203 SLWDLEQGWLQITNQIEIEFDPIHWRDKYLMPFQNTPLSFLASGTSD----ADVSTSFHLNTETRQCLESTAFSTVLESS  278 (359)
T ss_pred             hHHHHHHHHHHHHHHHHhcCCCCchHhhhcCCCCCCchhhHhccCCh----HHHHHHHHHhHHHHHHhcchhHHHHHHHH
Confidence            999999999999999999889999998 9999865432222233332    23356667777999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCC--------C---CCCCCcchhhhhhhhhhccccccCCCchHHHHHHhChhhHHHHHHHHhcc
Q 021405          240 FKAAVDALIDEMRVQSGG--------S---LISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVELFFTLLYAN  308 (312)
Q Consensus       240 l~~~f~~l~~~~~~~~~~--------~---~~~~~~LAkllp~v~~~~~~l~~~~~~n~yl~~l~~~~el~~fsA~vYs~  308 (312)
                      ++++   ++++++..+.+        .   ....+||||++|+++++.+.++++|++|+|+|.+..++++++|+|+||+|
T Consensus       279 ln~~---~~~~~g~~t~~~e~~~q~gn~~~~~v~~alAk~ip~ie~l~~~~tseps~n~flq~l~~~e~~kdl~anvye~  355 (359)
T KOG4444|consen  279 LNES---IMNKVGIKTIAKEKPLQEGNQQYQMVVLALAKKIPIIEGLQTTATSEPSGNEFLQTLDSVEPLKDLSANVYEN  355 (359)
T ss_pred             Hhhh---hhccccceeecccCcccccchHHHHHHHHHHHhhhhhhccccccccCCCcchHHHHHHhchhhhHHHhhhhhh
Confidence            9998   67777655411        1   13468999999999999999999988899999999999999999999999


Q ss_pred             CCCC
Q 021405          309 MSDS  312 (312)
Q Consensus       309 ~~~~  312 (312)
                      |+-+
T Consensus       356 f~~~  359 (359)
T KOG4444|consen  356 FSVS  359 (359)
T ss_pred             ccCC
Confidence            9864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	312
3ajb_A	330	Crystal Structure Of Human Pex3p In Complex With N-		3e-20
3mk4_A	334	X-Ray Structure Of Human Pex3 In Complex With A Pex		4e-20

>pdb|3AJB|A Chain A, Crystal Structure Of Human Pex3p In Complex With N-Terminal Pex19p Peptide Length = 330

Iteration: 1
 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 164/336 (48%), Gaps = 51/336 (15%)
Query: 2   QAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWD 61
           Q H+E  QR  + T L   +  L   + ++L+   LT  L   K +P     S KLE+W+
Sbjct: 12  QYHFESNQRTCNMTVL-SMLPTLREALMQQLNSESLTALL---KNRP-----SNKLEIWE 62
Query: 62  RLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQ 121
            LKI+SFT+  VA+++  M+ + +RVQ+NI+G ++Y+D A  +G +       L   D Q
Sbjct: 63  DLKIISFTRSTVAVYSTCMLVVLLRVQLNIIGGYIYLDNA-AVGKNG---TTILAPPDVQ 118
Query: 122 QKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGS 181
           Q++L+S+ +L   G+  +I+ ++ A  + L    L+   + + L +   +I  +     S
Sbjct: 119 QQYLSSIQHLLGDGLTELITVIKQAVQKVLGSVSLKHSLSLLDLEQKLKEIRNLVEQHKS 178
Query: 182 PHQWVD----------FLMPQDIRFYKLVTASG---HDETTLSGATKFDELMVETRAVLS 228
              W++          ++MP D      V A G    D TT+       +L+ ETR +L 
Sbjct: 179 -SSWINKDGSKPLLCHYMMP-DEETPLAVQACGLSPRDITTI-------KLLNETRDMLE 229
Query: 229 SAEYTSVVDMSFKAAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRVVQM 275
           S ++++V++         L+D M          +Q G S+ S     +PLAK++P V   
Sbjct: 230 SPDFSTVLNTCLNRGFSRLLDNMAEFFRPTEQDLQHGNSMNSLSSVSLPLAKIIPIVNGQ 289
Query: 276 SPSLLAE-PSNNRIIQVIRTIPEVELFFTLLYANMS 310
             S+ +E PS+   +Q + T+ +V+ F   +Y   S
Sbjct: 290 IHSVCSETPSH--FVQDLLTMEQVKDFAANVYEAFS 323

>pdb|3MK4|A Chain A, X-Ray Structure Of Human Pex3 In Complex With A Pex19 Derived Peptide Length = 334

Iteration: 1
 Score = 95.1 bits (235), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 164/336 (48%), Gaps = 51/336 (15%)
Query: 2   QAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWD 61
           Q H+E  QR  + T L   +  L   + ++L+   LT  L   K +P     S KLE+W+
Sbjct: 16  QYHFESNQRTCNMTVL-SMLPTLREALMQQLNSESLTALL---KNRP-----SNKLEIWE 66
Query: 62  RLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQ 121
            LKI+SFT+  VA+++  M+ + +RVQ+NI+G ++Y+D A  +G +       L   D Q
Sbjct: 67  DLKIISFTRSTVAVYSTCMLVVLLRVQLNIIGGYIYLDNA-AVGKNG---TTILAPPDVQ 122
Query: 122 QKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGS 181
           Q++L+S+ +L   G+  +I+ ++ A  + L    L+   + + L +   +I  +     S
Sbjct: 123 QQYLSSIQHLLGDGLTELITVIKQAVQKVLGSVSLKHSLSLLDLEQKLKEIRNLVEQHKS 182
Query: 182 PHQWVD----------FLMPQDIRFYKLVTASG---HDETTLSGATKFDELMVETRAVLS 228
              W++          ++MP D      V A G    D TT+       +L+ ETR +L 
Sbjct: 183 -SSWINKDGSKPLLSHYMMP-DEETPLAVQACGLSPRDITTI-------KLLNETRDMLE 233
Query: 229 SAEYTSVVDMSFKAAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRVVQM 275
           S ++++V++         L+D M          +Q G S+ S     +PLAK++P V   
Sbjct: 234 SPDFSTVLNTCLNRGFSRLLDNMAEFFRPTEQDLQHGNSMNSLSSVSLPLAKIIPIVNGQ 293
Query: 276 SPSLLAE-PSNNRIIQVIRTIPEVELFFTLLYANMS 310
             S+ +E PS+   +Q + T+ +V+ F   +Y   S
Sbjct: 294 IHSVCSETPSH--FVQDLLTMEQVKDFAANVYEAFS 327

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	312
3mk4_A	334	Peroxisomal biogenesis factor 3; membrane, peroxis	1e-53
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05

>3mk4_A Peroxisomal biogenesis factor 3; membrane, peroxisome, protein transport; 2.42A {Homo sapiens} PDB: 3ajb_A Length = 334

 Score =  177 bits (449), Expect = 1e-53
 Identities = 76/329 (23%), Positives = 141/329 (42%), Gaps = 31/329 (9%)

Query: 1   MQAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELW 60
            Q H+E  QR  + T L   +  L   + ++L+   LT  L            S KLE+W
Sbjct: 15  RQYHFESNQRTCNMTVLS-MLPTLREALMQQLNSESLTALLKNRP--------SNKLEIW 65

Query: 61  DRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDD 120
           + LKI+SFT+  VA+++  M+ + +RVQ+NI+G ++Y+D A    +        L   D 
Sbjct: 66  EDLKIISFTRSTVAVYSTCMLVVLLRVQLNIIGGYIYLDNAAVGKNG----TTILAPPDV 121

Query: 121 QQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMG 180
           QQ++L+S+ +L   G+  +I+ ++ A  + L    L+   + + L +   +I  +     
Sbjct: 122 QQQYLSSIQHLLGDGLTELITVIKQAVQKVLGSVSLKHSLSLLDLEQKLKEIRNLVEQHK 181

Query: 181 SPHQWVDFLMPQDIRFYKLVTASGHDETTLSGAT----KFDELMVETRAVLSSAEYTSVV 236
           S            +  Y +            G +       +L+ ETR +L S ++++V+
Sbjct: 182 SSSWINKDGSKPLLSHYMMPDEETPLAVQACGLSPRDITTIKLLNETRDMLESPDFSTVL 241

Query: 237 DMSFKAAVDALIDEMRV-------------QSGGSLISGMPLAKLVPRVVQMSPSLLAEP 283
           +         L+D M                        +PLAK++P V     S+ +E 
Sbjct: 242 NTCLNRGFSRLLDNMAEFFRPTEQDLQHGNSMNSLSSVSLPLAKIIPIVNGQIHSVCSET 301

Query: 284 SNNRIIQVIRTIPEVELFFTLLYANMSDS 312
             +  +Q + T+ +V+ F   +Y   S  
Sbjct: 302 -PSHFVQDLLTMEQVKDFAANVYEAFSTP 329

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.4 bits (135), Expect = 5e-09
 Identities = 54/297 (18%), Positives = 101/297 (34%), Gaps = 79/297 (26%)

Query: 13  DATTLPHAMH-----YLSIRIAEELDLSPLT---------DKLLRGKEQPY-TLSSSEKL 57
               LP  +       LSI IAE +     T         DKL    E     L  +E  
Sbjct: 314 RPQDLPREVLTTNPRRLSI-IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372

Query: 58  ELWDRLKILSF-------TKLVVALWAVTMVSLYIRVQVNILGR---------------- 94
           +++DRL +  F       T L+  +W   ++   + V VN L +                
Sbjct: 373 KMFDRLSV--FPPSAHIPTILLSLIWF-DVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429

Query: 95  HLYIDTARGLGSSDLPEDADL----IDRDDQQK-------FLASVD-YLANYGMQAMISN 142
            +Y++         L  +  L    +D  +  K           +D Y  ++    +   
Sbjct: 430 SIYLELKV-----KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL--- 481

Query: 143 VQAAADEALKGKQLRDIFNTVVLHETFMQ--ILEVFMSMGSPHQWVDFLMPQDIRFYK-- 198
                +   +    R +F    L   F++  I     +  +    ++ L  Q ++FYK  
Sbjct: 482 --KNIEHPERMTLFRMVF----LDFRFLEQKIRHDSTAWNASGSILNTL--QQLKFYKPY 533

Query: 199 LVTASGHDETTLSGATKFDELM-VETRAVLSSAEYTSVVDMSFKAAVDALIDEMRVQ 254
           +       E  ++    F  L  +E   + S  +YT ++ ++  A  +A+ +E   Q
Sbjct: 534 ICDNDPKYERLVNAILDF--LPKIEENLICS--KYTDLLRIALMAEDEAIFEEAHKQ 586

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 8e-05
 Identities = 56/313 (17%), Positives = 99/313 (31%), Gaps = 90/313 (28%)

Query: 6   EEVQRIADATTLPHAMHYLSIRIAEE-LDLSPLT-------DKLLRGKE--QPYTLSSSE 55
           E VQ+  +   L     +L   I  E    S +T       D+L    +    Y +S  +
Sbjct: 77  EMVQKFVE-EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135

Query: 56  K-LELWDRLKILSFTKLVVAL---------WAVTMVSLYIRVQVNILGRHLYIDTARGLG 105
             L+L   L  L   K V+ +         W    V L  +VQ  +  +  +++    L 
Sbjct: 136 PYLKLRQALLELRPAKNVL-IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN----LK 190

Query: 106 SSDLPED-----ADLIDRDDQQKFLASVDYLANYGMQAMISNVQAAADEALKGKQ----- 155
           + + PE        L+ + D   + +  D+ +N  ++  I ++QA     LK K      
Sbjct: 191 NCNSPETVLEMLQKLLYQIDP-NWTSRSDHSSNIKLR--IHSIQAELRRLLKSKPYENCL 247

Query: 156 --LRDIFNTVVLHETFMQILEVFMSMGSPHQWVDFLMPQDIRFYKLVTASGHDETT-LSG 212
             L ++ N         +    F                ++    L+T      T  LS 
Sbjct: 248 LVLLNVQNA--------KAWNAF----------------NLSCKILLTTRFKQVTDFLSA 283

Query: 213 ATKFDELMVETRAVLSSAEYTSVVDMSFKAAVDALIDEMRVQSGGSLISGMPLAKLVPRV 272
           AT     +      L+  E  S++                               L   V
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLL---------------------LKYLDCRPQDLPREV 322

Query: 273 VQMSP---SLLAE 282
           +  +P   S++AE
Sbjct: 323 LTTNPRRLSIIAE 335

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	312
3mk4_A	334	Peroxisomal biogenesis factor 3; membrane, peroxis	100.0

>3mk4_A Peroxisomal biogenesis factor 3; membrane, peroxisome, protein transport; 2.42A {Homo sapiens} PDB: 3ajb_A

Probab=100.00  E-value=8.2e-84  Score=610.71  Aligned_cols=292  Identities=27%  Similarity=0.404  Sum_probs=252.2

Q ss_pred             ChhhHHHHhhhhHHhHHHHHHHHHHHHHHHhcCchHHHHHHhcCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021405            1 MQAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKILSFTKLVVALWAVTM   80 (312)
Q Consensus         1 l~~~Fe~~Q~~c~~T~l~~llp~L~~~i~~~ld~e~i~~~Lk~~K~~~~~l~~~~K~eLW~eLKi~sftR~~t~iY~~sl   80 (312)
                      +++|||+||+||++|++ +++|+++++|++++|+|+||++||++        |++|+||||+|||+||||++|++|++||
T Consensus        15 ~~~hFe~tQ~~c~~Tvl-~llp~l~~~i~~~ld~e~lt~~Lk~~--------~~~K~eLW~eLKi~s~TR~~t~iY~~sl   85 (334)
T 3mk4_A           15 RQYHFESNQRTCNMTVL-SMLPTLREALMQQLNSESLTALLKNR--------PSNKLEIWEDLKIISFTRSTVAVYSTCM   85 (334)
T ss_dssp             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHSCHHHHHHHHTTC--------CSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHhC--------chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            37999999999999997 99999999999999999999999986        7799999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCccc
Q 021405           81 VSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIF  160 (312)
Q Consensus        81 L~ll~rvQLNiLgr~~Yl~s~~~~~~~~~~~~~~~~~~~~eq~fLs~s~~ll~~G~~~l~~~V~~~V~~v~~~~~lk~~l  160 (312)
                      |++++|+||||||||.|++++....++    .....|.++||+||++||||+|+||.+++++|+++|+++|++++||+.+
T Consensus        86 L~ll~RvQLNILGr~~Yl~sa~~~~~~----~~~~~~~~~qq~yLs~s~~ll~~G~~~l~~~Ve~~V~~v~~~~~lk~~l  161 (334)
T 3mk4_A           86 LVVLLRVQLNIIGGYIYLDNAAVGKNG----TTILAPPDVQQQYLSSIQHLLGDGLTELITVIKQAVQKVLGSVSLKHSL  161 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCC----------CCCSSCHHHHHHHHGGGHHHHTHHHHHHHHHHHHHHHHHHTTCCSSCEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCC----CCCCCChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHCCCCccccc
Confidence            999999999999999999997532221    1235788999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhcC---------CCcccccccccccchhhhhhhhcCCCCCcccCchhHHHHHHHHHHHhhcCHh
Q 021405          161 NTVVLHETFMQILEVFMSM---------GSPHQWVDFLMPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAE  231 (312)
Q Consensus       161 s~~~l~~l~~~i~~~~~~~---------~~~~~~~~~LlP~~~~~~~~~~~~~~~~~~~~~~~~l~~Ll~ET~d~leS~~  231 (312)
                      |+++|++++++||+.+++.         ++.+.|.+||+|++... .+.++++.    ..+++.+++|+|||+|+||||+
T Consensus       162 s~~~l~~l~~~Ir~~ve~~~~~~~~~~~~~~~~~~~yLlP~~~~~-~~~q~~~~----~~~~~~l~~Ll~ET~d~leS~~  236 (334)
T 3mk4_A          162 SLLDLEQKLKEIRNLVEQHKSSSWINKDGSKPLLSHYMMPDEETP-LAVQACGL----SPRDITTIKLLNETRDMLESPD  236 (334)
T ss_dssp             EHHHHHHHHHHHHHHHHTC-------------CGGGGTSCCCCC---------C----CHHHHHHHHHHHHHHHHHTSHH
T ss_pred             CHHHHHHHHHHHHHHHhccccccccccCCcccchHHhcCCCchhH-HHHhccCC----CCccHHHHHHHHHHHHHHcCHH
Confidence            9999999999999999863         24578999999997543 33333221    2345789999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCC-------------CCCCCcchhhhhhhhhhccccccCCCchHHHHHHhChhhH
Q 021405          232 YTSVVDMSFKAAVDALIDEMRVQSGGS-------------LISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEV  298 (312)
Q Consensus       232 f~~Vl~~~l~~~f~~l~~~~~~~~~~~-------------~~~~~~LAkllp~v~~~~~~l~~~~~~n~yl~~l~~~~el  298 (312)
                      |.+|++.|+|++|+.++|++++.|++.             +..++||||+||+|++|+|.+++ |.||+|++.|.++++|
T Consensus       237 f~~Vl~~~l~~~F~~l~d~~~~~f~~~~~~~~~~~~~~~~~~v~~~LAklLpvv~~q~~~i~~-~~pN~~lq~l~~~~el  315 (334)
T 3mk4_A          237 FSTVLNTCLNRGFSRLLDNMAEFFRPTEQDLQHGNSMNSLSSVSLPLAKIIPIVNGQIHSVCS-ETPSHFVQDLLTMEQV  315 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCC-----------------CEEEHHHHHHHHHTTHHHHTC-CSTTSHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCcccccccccchhhhHHHHHHHHHhhhhhccc-CCchHHHHHHHhhHHH
Confidence            999999999999999999999877421             13689999999999999998765 6899999999999999


Q ss_pred             HHHHHHHhccCCC
Q 021405          299 ELFFTLLYANMSD  311 (312)
Q Consensus       299 ~~fsA~vYs~~~~  311 (312)
                      ++|||+||++|+.
T Consensus       316 ~~f~A~VY~sf~~  328 (334)
T 3mk4_A          316 KDFAANVYEAFST  328 (334)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCC
Confidence            9999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00