Citrus Sinensis ID: 021435

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310--
MHMQVEELYSLDLDSLNNLRPVYGLIFLFKWRPGEKDDRVVIKDPNPNLFFASQVINNACATQAILSILLNCPDIDIGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAGKDDDVYHFISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKNRKELYTAELKEFQRKRERILQQLASLQSERMVDKTSFEALNKSLSEVNAGIEGATEKILMEEEKFKKWRTENIRRKHNYIPFLFNFLKILAEKKQLKPLIEKAKQKTSSSS
cccEEEEEEcccHHHHHcccccEEEEEEEEcccccccccccccccccccEEEHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccHHHHHcccccHHHHHHHHHHccccccccccccccccccccEEEEEEEEcccEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHccccccEEEEHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHcHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHcccc
ccEEEEEEEcccHHHHHccccEEEEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHccccHHHHHHHHHccccccccccccccccccccEEEEEEEEEcccEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHcccccEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHccc
MHMQVEELYSldldslnnlrpvyGLIFLfkwrpgekddrvvikdpnpnlffASQVINNACATQAILSILlncpdidigpelsklkeftknfppelkglainnSDAIRAAhnsfarpepfvpeeqkaagkdddvyhfisyipvdgvlyeldglkegpislgpctggqgdmdwLQMVQPVIQERIERYSKSEIRFNLMAVIKNRKELYTAELKEFQRKRERILQQLASLQSERMVDKTSFEALNKSLSEVNAGIEGATEKILMEEEKFKKWRTEnirrkhnyiPFLFNFLKILAEKKQLKPLIEKakqktssss
MHMQVEELYSLDLDSLNNLRPVYGLIFLFKWRPGEKDDRVVIKDPNPNLFFASQVINNACATQAILSILLNCPDIDIGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAGKDDDVYHFISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKNRKELYTAELKEFQRKRERILQQLaslqsermvdKTSFEALNkslsevnagiegatekilMEEEKFKKwrtenirrkhnYIPFLFNFLKILAEKKQLKPliekakqktssss
MHMQVeelysldldslnnlRPVYGLIFLFKWRPGEKDDRVVIKDPNPNLFFASQVINNACATQAILSILLNCPDIDIGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAGKDDDVYHFISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKNRKELYTAELKEFQRKRERILQQLASLQSERMVDKTSFEALNKSLSEVNAGIEGATEKILMEEEKFKKWRTENIRRKHNYIPFLFNFLKILAEKKQLKPLIEKAKQKTSSSS
*******LYSLDLDSLNNLRPVYGLIFLFKWRPGEKDDRVVIKDPNPNLFFASQVINNACATQAILSILLNCPDIDIGPELSKLKEFTKNFPPELKGLAIN*****************************DDVYHFISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKNRKELYTAELKEFQ************************************GIEGATEKILMEEEKFKKWRTENIRRKHNYIPFLFNFLKILAEK******************
MHMQVEELYSLDLDSLNNLRPVYGLIFLFKWRPGEKDDRVVIKDPNPNLFFASQVINNACATQAILSILLNCPDIDIGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNS*******************DVYHFISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKNRKELYTAELKEFQRK***********************************IEGATEKIL**EEKFKKWRTENIRRKHNYIPFLFNFLKILAEKKQL*P*************
MHMQVEELYSLDLDSLNNLRPVYGLIFLFKWRPGEKDDRVVIKDPNPNLFFASQVINNACATQAILSILLNCPDIDIGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAGKDDDVYHFISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKNRKELYTAELKEFQRKRERILQQLASLQSERMVDKTSFEALNKSLSEVNAGIEGATEKILMEEEKFKKWRTENIRRKHNYIPFLFNFLKILAEKKQLKPL************
MHMQVEELYSLDLDSLNNLRPVYGLIFLFKWRPGEKDDRVVIKDPNPNLFFASQVINNACATQAILSILLNCPDIDIGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPE****AGKDDDVYHFISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKNRKELYTAELKEFQRKRERILQQLASLQSER*V**TSFEALNKSLSEVNAGIEGATEKILMEEEKFKKWRTENIRRKHNYIPFLFNFLKILAEKKQLKPLIEKAKQK*****
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MHMQVEELYSLDLDSLNNLRPVYGLIFLFKWRPGEKDDRVVIKDPNPNLFFASQVINNACATQAILSILLNCPDIDIGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAGKDDDVYHFISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRMVDKTSFEALNKSLSEVNAGIEGATEKILMEEEKFKKWRTENIRRKHNYIPFLFNFLKILAEKKQLKPLIEKAKQKTSSSS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query312 2.2.26 [Sep-21-2011]
Q9XSJ0328 Ubiquitin carboxyl-termin yes no 0.916 0.871 0.493 7e-80
Q9WUP7329 Ubiquitin carboxyl-termin yes no 0.919 0.872 0.5 1e-79
Q06AT3329 Ubiquitin carboxyl-termin yes no 0.919 0.872 0.496 2e-79
Q9Y5K5329 Ubiquitin carboxyl-termin yes no 0.919 0.872 0.490 2e-79
Q54N38343 Ubiquitin carboxyl-termin yes no 0.958 0.871 0.490 4e-78
Q9UUB6300 Ubiquitin carboxyl-termin yes no 0.852 0.886 0.417 5e-59
Q09444321 Probable ubiquitin carbox yes no 0.884 0.859 0.394 1e-56
D3ZHS6 727 Ubiquitin carboxyl-termin no no 0.701 0.301 0.462 1e-47
Q92560 729 Ubiquitin carboxyl-termin no no 0.701 0.300 0.462 4e-47
Q99PU7 728 Ubiquitin carboxyl-termin no no 0.701 0.300 0.458 9e-47
>sp|Q9XSJ0|UCHL5_BOVIN Ubiquitin carboxyl-terminal hydrolase isozyme L5 OS=Bos taurus GN=UCHL5 PE=2 SV=1 Back     alignment and function desciption
 Score =  297 bits (760), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 154/312 (49%), Positives = 214/312 (68%), Gaps = 26/312 (8%)

Query: 4   QVEELYSLDLDSLNNLRPVYGLIFLFKWRPGEKDDRVVIKDPN-PNLFFASQVINNACAT 62
           QVEE++SL+ ++   L+PV+GLIFLFKW+PGE+    V++D     +FFA QVINNACAT
Sbjct: 31  QVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINNACAT 90

Query: 63  QAILSILLNCP--DIDIGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFV 120
           QAI+S+LLNC   D+ +G  LS+ KEF+++F   +KGLA++NSD IR  HNSFAR + F 
Sbjct: 91  QAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMF- 149

Query: 121 PEEQKAAGKDDDVYHFISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQ 180
             + K A K++D +HF+SY+PV+G LYELDGL+EGPI LG C       DW+  V+PVI+
Sbjct: 150 EFDAKTAAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQD----DWISAVRPVIE 205

Query: 181 ERIERYSKSEIRFNLMAVIKNRKELYTAELKEFQRKRERILQQLASLQSERMVDKTSFEA 240
           +RI++YS+ EIRFNLMA++ +RK +Y  ++ E QR+          L  E M        
Sbjct: 206 KRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQRQ----------LAEEPMDTDQGSNM 255

Query: 241 LNKSLSEVNAGIEGATEKILMEEE--KFKKWRTENIRRKHNYIPFLFNFLKILAEKKQLK 298
           L+   SEV      A  ++L+EEE  K K+++ ENIRRKHNY+PF+   LK LAE +QL 
Sbjct: 256 LSAIQSEV------AKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLI 309

Query: 299 PLIEKAKQKTSS 310
           PL+EKAK+K ++
Sbjct: 310 PLVEKAKEKQNA 321
Protease that specifically cleaves 'Lys-48'-linked polyubiquitin chains. Deubiquitinating enzyme associated with the 19S regulatory subunit of the 26S proteasome. Putative regulatory component of the INO80 complex; however is inactive in the INO80 complex and is activated by a transient interaction of the INO80 complex with the proteasome via ADRM1.
Bos taurus (taxid: 9913)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2
>sp|Q9WUP7|UCHL5_MOUSE Ubiquitin carboxyl-terminal hydrolase isozyme L5 OS=Mus musculus GN=Uchl5 PE=2 SV=2 Back     alignment and function description
>sp|Q06AT3|UCHL5_PIG Ubiquitin carboxyl-terminal hydrolase isozyme L5 OS=Sus scrofa GN=UCHL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9Y5K5|UCHL5_HUMAN Ubiquitin carboxyl-terminal hydrolase isozyme L5 OS=Homo sapiens GN=UCHL5 PE=1 SV=3 Back     alignment and function description
>sp|Q54N38|UCHL5_DICDI Ubiquitin carboxyl-terminal hydrolase isozyme L5 OS=Dictyostelium discoideum GN=uch2 PE=3 SV=1 Back     alignment and function description
>sp|Q9UUB6|UBLH2_SCHPO Ubiquitin carboxyl-terminal hydrolase 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=uch2 PE=1 SV=1 Back     alignment and function description
>sp|Q09444|UBH4_CAEEL Probable ubiquitin carboxyl-terminal hydrolase ubh-4 OS=Caenorhabditis elegans GN=ubh-4 PE=3 SV=2 Back     alignment and function description
>sp|D3ZHS6|BAP1_RAT Ubiquitin carboxyl-terminal hydrolase BAP1 OS=Rattus norvegicus GN=Bap1 PE=3 SV=2 Back     alignment and function description
>sp|Q92560|BAP1_HUMAN Ubiquitin carboxyl-terminal hydrolase BAP1 OS=Homo sapiens GN=BAP1 PE=1 SV=2 Back     alignment and function description
>sp|Q99PU7|BAP1_MOUSE Ubiquitin carboxyl-terminal hydrolase BAP1 OS=Mus musculus GN=Bap1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query312
225431633334 PREDICTED: ubiquitin carboxyl-terminal h 0.990 0.925 0.896 1e-164
356576644334 PREDICTED: ubiquitin carboxyl-terminal h 0.987 0.922 0.905 1e-164
356535244334 PREDICTED: ubiquitin carboxyl-terminal h 0.987 0.922 0.896 1e-162
449447631334 PREDICTED: ubiquitin carboxyl-terminal h 0.987 0.922 0.863 1e-157
449527357308 PREDICTED: ubiquitin carboxyl-terminal h 0.980 0.993 0.866 1e-156
224140903334 predicted protein [Populus trichocarpa] 0.990 0.925 0.864 1e-153
224080017334 predicted protein [Populus trichocarpa] 0.996 0.931 0.853 1e-152
255556663335 ubiquitin carboxyl-terminal hydrolase is 0.996 0.928 0.856 1e-151
296088487313 unnamed protein product [Vitis vinifera] 0.923 0.920 0.841 1e-151
115449807331 Os02g0822200 [Oryza sativa Japonica Grou 0.967 0.912 0.745 1e-136
>gi|225431633|ref|XP_002262954.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L5 [Vitis vinifera] gi|147766506|emb|CAN60599.1| hypothetical protein VITISV_027729 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  584 bits (1505), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 277/309 (89%), Positives = 299/309 (96%)

Query: 3   MQVEELYSLDLDSLNNLRPVYGLIFLFKWRPGEKDDRVVIKDPNPNLFFASQVINNACAT 62
           +QVEELYSLDLDSLN+LRPVYGLIFLFKWRPGEKDDR+VIKDPNPNLFFASQVINNACAT
Sbjct: 25  VQVEELYSLDLDSLNHLRPVYGLIFLFKWRPGEKDDRLVIKDPNPNLFFASQVINNACAT 84

Query: 63  QAILSILLNCPDIDIGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPE 122
           QAILSIL+NCPD+DIGPELS LKEFTKNFPPELKGLAINNS+AIR AHNSFARPEPFVPE
Sbjct: 85  QAILSILMNCPDVDIGPELSMLKEFTKNFPPELKGLAINNSEAIRTAHNSFARPEPFVPE 144

Query: 123 EQKAAGKDDDVYHFISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQER 182
           EQKAAGKDDDVYHFISY+PVDG+LYELDGLKEGPISLG C GGQGD+DW++MVQPVIQER
Sbjct: 145 EQKAAGKDDDVYHFISYLPVDGILYELDGLKEGPISLGQCPGGQGDLDWVRMVQPVIQER 204

Query: 183 IERYSKSEIRFNLMAVIKNRKELYTAELKEFQRKRERILQQLASLQSERMVDKTSFEALN 242
           IERYS+SEIRFNLMA+IKNRK++YT ELKE Q++RE IL QLA+LQSERMVD ++ EALN
Sbjct: 205 IERYSRSEIRFNLMAIIKNRKDIYTGELKELQKRREHILHQLAALQSERMVDNSNIEALN 264

Query: 243 KSLSEVNAGIEGATEKILMEEEKFKKWRTENIRRKHNYIPFLFNFLKILAEKKQLKPLIE 302
           KSLSEVNAGIEGATEKILMEEEKFKKWRTENIRRKHNYIPFLFNFLKILAEKKQLKPLIE
Sbjct: 265 KSLSEVNAGIEGATEKILMEEEKFKKWRTENIRRKHNYIPFLFNFLKILAEKKQLKPLIE 324

Query: 303 KAKQKTSSS 311
           KAKQKT++S
Sbjct: 325 KAKQKTNNS 333

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356576644|ref|XP_003556440.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L5-like [Glycine max] Back     alignment and taxonomy information
>gi|356535244|ref|XP_003536158.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L5-like [Glycine max] Back     alignment and taxonomy information
>gi|449447631|ref|XP_004141571.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449527357|ref|XP_004170678.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L5-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|224140903|ref|XP_002323817.1| predicted protein [Populus trichocarpa] gi|222866819|gb|EEF03950.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224080017|ref|XP_002305992.1| predicted protein [Populus trichocarpa] gi|222848956|gb|EEE86503.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255556663|ref|XP_002519365.1| ubiquitin carboxyl-terminal hydrolase isozyme L5, putative [Ricinus communis] gi|223541432|gb|EEF42982.1| ubiquitin carboxyl-terminal hydrolase isozyme L5, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|296088487|emb|CBI37478.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|115449807|ref|NP_001048557.1| Os02g0822200 [Oryza sativa Japonica Group] gi|48716277|dbj|BAD22892.1| putative ubitquitin C-terminal hydrolase [Oryza sativa Japonica Group] gi|48716519|dbj|BAD23124.1| putative ubiquitin C-terminal hydrolase [Oryza sativa Japonica Group] gi|113538088|dbj|BAF10471.1| Os02g0822200 [Oryza sativa Japonica Group] gi|125541669|gb|EAY88064.1| hypothetical protein OsI_09494 [Oryza sativa Indica Group] gi|125584190|gb|EAZ25121.1| hypothetical protein OsJ_08921 [Oryza sativa Japonica Group] gi|215764980|dbj|BAG86677.1| unnamed protein product [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query312
TAIR|locus:2018516330 UCH2 [Arabidopsis thaliana (ta 0.923 0.872 0.792 6.5e-122
TAIR|locus:2171312334 UCH1 [Arabidopsis thaliana (ta 0.910 0.850 0.696 2.3e-110
DICTYBASE|DDB_G0285527343 uch2 "ubiquitin C-terminal hyd 0.903 0.822 0.494 1.3e-68
UNIPROTKB|Q5LJA9368 UCHL5 "Ubiquitin carboxyl-term 0.868 0.736 0.458 9.7e-64
UNIPROTKB|Q5LJA5355 UCHL5 "Ubiquitin carboxyl-term 0.865 0.760 0.458 1.6e-63
UNIPROTKB|F1P541297 UCHL5 "Uncharacterized protein 0.625 0.656 0.478 3.7e-62
FB|FBgn0051639324 CG31639 [Drosophila melanogast 0.599 0.577 0.5 2.6e-61
FB|FBgn0011327324 Uch-L5 "Ubiquitin carboxy-term 0.599 0.577 0.5 2.6e-61
UNIPROTKB|Q9XSJ0328 UCHL5 "Ubiquitin carboxyl-term 0.708 0.673 0.495 1.4e-55
UNIPROTKB|E2QWM9329 UCHL5 "Uncharacterized protein 0.711 0.674 0.491 3.7e-55
TAIR|locus:2018516 UCH2 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1199 (427.1 bits), Expect = 6.5e-122, P = 6.5e-122
 Identities = 233/294 (79%), Positives = 262/294 (89%)

Query:    20 RPVYGLIFLFKWRPGEKDDRVVIKDPNPNLFFASQVINNACATQAILSILLNCPDIDIGP 79
             RPVYGLIFLFKW+ GEKD+R  I+D   NLFFA+QVINNACATQAIL+ILLN P++DIGP
Sbjct:    42 RPVYGLIFLFKWQAGEKDERPTIQDQVSNLFFANQVINNACATQAILAILLNSPEVDIGP 101

Query:    80 ELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAGKDDDVYHFISY 139
             ELS LKEFTKNFP +LKGLAINNSD+IRAAHNSFARPEPFVPEEQKAA KDDDVYHFISY
Sbjct:   102 ELSALKEFTKNFPSDLKGLAINNSDSIRAAHNSFARPEPFVPEEQKAATKDDDVYHFISY 161

Query:   140 IPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVI 199
             IPVDGVLYELDGLKEGPISLGPC G Q  ++WLQMVQPVIQERIERYS+SEIRFNL+AVI
Sbjct:   162 IPVDGVLYELDGLKEGPISLGPCPGDQTGIEWLQMVQPVIQERIERYSQSEIRFNLLAVI 221

Query:   200 KNRKELYTAELKEFQRKRERILQQLASLQSERMVDKTSFEALNKSLSEVNAGIEGATEKI 259
             KNRK++YTAELKE QR+RE++LQQ     +   VDK+  EA+N  ++EV +GIE A++KI
Sbjct:   222 KNRKDIYTAELKELQRQREQLLQQ-----ANTCVDKSEAEAVNALIAEVGSGIEAASDKI 276

Query:   260 LMEEEKFKKWRTENIRRKHNYIPFLFNFLKILAEKKQLKPLIEKAK-QKTSSSS 312
             +MEEEKF KWRTENIRRKHNYIPFLFNFLK+LAEKKQLKPLIEKAK QKT SS+
Sbjct:   277 VMEEEKFMKWRTENIRRKHNYIPFLFNFLKLLAEKKQLKPLIEKAKKQKTESST 330
GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISS
GO:0008242 "omega peptidase activity" evidence=IEA
GO:0004843 "ubiquitin-specific protease activity" evidence=IDA
GO:0005737 "cytoplasm" evidence=IDA
GO:0010016 "shoot system morphogenesis" evidence=IGI
GO:0016579 "protein deubiquitination" evidence=RCA;IDA
GO:0048366 "leaf development" evidence=IGI
GO:0048367 "shoot system development" evidence=IGI
GO:0005515 "protein binding" evidence=IPI
GO:0009640 "photomorphogenesis" evidence=RCA
GO:0010388 "cullin deneddylation" evidence=RCA
GO:0016567 "protein ubiquitination" evidence=RCA
GO:0016571 "histone methylation" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
TAIR|locus:2171312 UCH1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0285527 uch2 "ubiquitin C-terminal hydrolase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q5LJA9 UCHL5 "Ubiquitin carboxyl-terminal hydrolase isozyme L5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5LJA5 UCHL5 "Ubiquitin carboxyl-terminal hydrolase isozyme L5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1P541 UCHL5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
FB|FBgn0051639 CG31639 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0011327 Uch-L5 "Ubiquitin carboxy-terminal hydrolase L5 ortholog" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q9XSJ0 UCHL5 "Ubiquitin carboxyl-terminal hydrolase isozyme L5" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2QWM9 UCHL5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q54N38UCHL5_DICDI3, ., 4, ., 1, 9, ., 1, 20.49050.95830.8717yesno
Q9WUP7UCHL5_MOUSE3, ., 4, ., 1, 9, ., 1, 20.50.91980.8723yesno
Q06AT3UCHL5_PIG3, ., 4, ., 1, 9, ., 1, 20.49670.91980.8723yesno
Q9UUB6UBLH2_SCHPO3, ., 4, ., 1, 9, ., 1, 20.41710.85250.8866yesno
Q9XSJ0UCHL5_BOVIN3, ., 4, ., 1, 9, ., 1, 20.49350.91660.8719yesno
Q9Y5K5UCHL5_HUMAN3, ., 4, ., 1, 9, ., 1, 20.49030.91980.8723yesno
Q09444UBH4_CAEEL3, ., 4, ., 1, 9, ., 1, 20.39420.88460.8598yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.190.921
3rd Layer3.4.19.120.914

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00005967001
SubName- Full=Chromosome chr4 scaffold_162, whole genome shotgun sequence; (321 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00014791001
SubName- Full=Putative uncharacterized protein (Chromosome chr18 scaffold_1, whole genome shotg [...] (309 aa)
   •• • 0.892
GSVIVG00010470001
SubName- Full=Chromosome chr17 scaffold_263, whole genome shotgun sequence; (386 aa)
   ••   0.867
GSVIVG00036762001
SubName- Full=Chromosome chr4 scaffold_83, whole genome shotgun sequence; (440 aa)
   •• • 0.827
GSVIVG00024499001
RecName- Full=Proteasome subunit beta type; EC=3.4.25.1;; The proteasome is a multicatalytic pr [...] (245 aa)
   •• • 0.790
GSVIVG00034204001
RecName- Full=Ubiquitin carboxyl-terminal hydrolase; EC=3.1.2.15; (479 aa)
   •• • 0.787
GSVIVG00023752001
SubName- Full=Putative uncharacterized protein (Chromosome chr7 scaffold_31, whole genome shotg [...] (205 aa)
   •• • 0.781
GSVIVG00006696001
SubName- Full=Chromosome chr2 scaffold_176, whole genome shotgun sequence; (267 aa)
   •• • 0.774
GSVIVG00018640001
SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (629 aa)
    • • 0.741
GSVIVG00015420001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (191 aa)
   ••   0.716
GSVIVG00026350001
RecName- Full=Proteasome subunit beta type; EC=3.4.25.1;; The proteasome is a multicatalytic pr [...] (223 aa)
   •• • 0.661

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query312
cd09617219 cd09617, Peptidase_C12_UCH37_BAP1, Cysteine peptid 1e-114
pfam01088211 pfam01088, Peptidase_C12, Ubiquitin carboxyl-termi 4e-85
cd02255222 cd02255, Peptidase_C12, Cysteine peptidase C12 con 1e-64
cd09616222 cd09616, Peptidase_C12_UCH_L1_L3, Cysteine peptida 7e-33
>gnl|CDD|187738 cd09617, Peptidase_C12_UCH37_BAP1, Cysteine peptidase C12 containing ubiquitin carboxyl-terminal hydrolase (UCH) families UCH37 (UCH-L5) and BAP1 Back     alignment and domain information 
 Score =  328 bits (842), Expect = e-114
 Identities = 129/199 (64%), Positives = 155/199 (77%), Gaps = 7/199 (3%)

Query: 4   QVEELYSLDLDSLNNLRPVYGLIFLFKWRPGEKDDRVVIKD-PNPNLFFASQVINNACAT 62
           QVEELYSLD DSL  L PVYGLIFLFKW+ GE+D+  V+ D    N+FFA+QVI NACAT
Sbjct: 24  QVEELYSLDADSLEQLPPVYGLIFLFKWQEGEEDEGSVVDDEIPSNIFFANQVIPNACAT 83

Query: 63  QAILSILLNCPD-IDIGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVP 121
           QA+LS+LLNC D +D+G  LS+ KEFTK F PE+KG AI NS+ IR  HNSFARPEPF+ 
Sbjct: 84  QALLSVLLNCSDEVDLGETLSEFKEFTKGFDPEMKGEAIGNSEEIRKVHNSFARPEPFLL 143

Query: 122 EEQ--KAAGKDDDVYHFISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVI 179
           +E+  K A K++D +HFISY+P+ G LYELDGLKEGPI  GPC+ G+   DWL+  +PVI
Sbjct: 144 DEKLNKKATKEEDAFHFISYVPIGGRLYELDGLKEGPIDHGPCSEGE---DWLEKARPVI 200

Query: 180 QERIERYSKSEIRFNLMAV 198
           Q RI RYS+ EIRFNLMAV
Sbjct: 201 QARIARYSEGEIRFNLMAV 219

This ubiquitin C-terminal hydrolase (UCH) family includes UCH37 (also known as UCH-L5) and BRCA1-associated protein-1 (BAP1). They contain a UCH catalytic domain as well as an additional C-terminal extension which plays a role in protein-protein interactions. UCH37 is responsible for ubiquitin (Ub) isopeptidase activity in the 19S proteasome regulatory complex; it disassembles Lys48-linked poly-ubiquitin from the distal end of the chain. It is also associated with the human Ino80 chromatin-remodeling complex (hINO80) in the nucleus and can be activated through transient association of hINO80 with hRpn13 that is bound to the 19S regulatory particle or the proteasome. UCH37 possibly plays a role in oncogenesis; it competes with Smad ubiquitination regulatory factor 2 (Smurf2, ubiquitin ligase) in binding concurrently to Smad7 in order to deubiquitinate the activated type I transforming growth factor beta (TGF-beta) receptor, thus rescuing it from proteasomal degradation. BAP1 binds to the wild-type BRCA1 RING finger domain, localized in the nucleus. In addition to the UCH catalytic domain, BAP1 contains a UCH37-like domain (ULD), binding domains for BRCA1 and BARD1, which form a tumor suppressor heterodimeric complex, and a binding domain for HCFC1, which interacts with histone-modifying complexes during cell division. The full-length human BRCA1 is a ubiquitin ligase. However, BAP1 does not appear to function in the deubiquitination of autoubiquitinated BRCA1. BAP1 exhibits tumor suppressor activity in cancer cells, and gene mutations have been reported in a small number of breast and lung cancer samples. In metastasis of uveal melanoma, the most common primary cancer of the eye, inactivating somatic mutations have been identified in the gene encoding BAP1 on chromosome 3p21.1. These mutations include several that cause premature protein termination as well as affect its UCH domain, thus implicating loss of BAP1 and suggesting that the BAP1 pathway may be a valuable therapeutic target. Length = 219
>gnl|CDD|216294 pfam01088, Peptidase_C12, Ubiquitin carboxyl-terminal hydrolase, family 1 Back     alignment and domain information
>gnl|CDD|187736 cd02255, Peptidase_C12, Cysteine peptidase C12 contains ubiquitin carboxyl-terminal hydrolase (UCH) families L1, L3, L5 and BAP1 Back     alignment and domain information
>gnl|CDD|187737 cd09616, Peptidase_C12_UCH_L1_L3, Cysteine peptidase C12 containing ubiquitin carboxyl-terminal hydrolase (UCH) families L1 and L3 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 312
KOG2778328 consensus Ubiquitin C-terminal hydrolase [Posttran 100.0
PF01088214 Peptidase_C12: Ubiquitin carboxyl-terminal hydrola 100.0
KOG1415222 consensus Ubiquitin C-terminal hydrolase UCHL1 [Po 100.0
>KOG2778 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=6e-90  Score=634.87  Aligned_cols=290  Identities=65%  Similarity=1.054  Sum_probs=253.9

Q ss_pred             CCCEEEEeccCChhhhhccCCceEEEEEeecCCCCccccccccCCCCCccchhhhhhhhhHHHHHHHhhcCCC--CCCCC
Q 021435            1 MHMQVEELYSLDLDSLNNLRPVYGLIFLFKWRPGEKDDRVVIKDPNPNLFFASQVINNACATQAILSILLNCP--DIDIG   78 (312)
Q Consensus         1 ~gv~f~DVysLD~~~L~~~~Pv~alIfLFp~~~~~~~~~~~~~~~~~~v~FakQtI~NACgT~AlLh~l~N~~--~i~lg   78 (312)
                      .||||+||||||.+.+..++|||||||||+|.+++++......+.-++||||||+|+|||||+|||++|+|+.  +|+||
T Consensus        23 ~gvQVEElysLd~~~~~~~~piyGlIFLFKW~~ed~~~g~v~~D~~~niFFA~QvInNACATqAlLsvLlN~~~~~idLG  102 (328)
T KOG2778|consen   23 KGVQVEELYSLDSDSLRPLRPIYGLIFLFKWIEEDKPAGSVIDDSVSNIFFAKQVINNACATQALLSVLLNCSHEDIDLG  102 (328)
T ss_pred             CceeEeeeeccCcchhccCCCceeEEEEEEeccCCCCCcccccccccchhhhhhhcccHHHHHHHHHHHHcCCccccchh
Confidence            4899999999999999999999999999999987666655555544689999999999999999999999984  69999


Q ss_pred             cchHHHHHHhcCCChhhHHhhhcCCHHHHHHHHhcCCCCCCCccccccCC--CCCCcceEEEEEeeCCeEEeecCCCCCC
Q 021435           79 PELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAG--KDDDVYHFISYIPVDGVLYELDGLKEGP  156 (312)
Q Consensus        79 s~L~~f~~~t~~~~p~~Rg~~L~ns~~i~~~Hns~A~~g~~~~~~~~~~~--~~~~~~HFI~fV~~~G~lyELDGlk~gP  156 (312)
                      ++|++||+||++|+|+.||.+|+|+++||.+|||||||..+.+.+..+..  .++++||||+|||++|+||||||+|.||
T Consensus       103 ~tLs~~K~f~k~f~Pe~KGlal~Nse~Ir~~HNSfARp~~~~~~e~~a~~~~~~dd~yHFVsyvPI~g~lyELDGLke~P  182 (328)
T KOG2778|consen  103 PTLSELKEFTKGFDPELKGLALGNSEEIRCAHNSFARPEPFRPEEVDAATSAKEDDVYHFVSYVPINGRLYELDGLKEGP  182 (328)
T ss_pred             hHHHHHHHHhhcCChhhcccccCCcHHHHHHhccccCCCCcchhhhhcccccccccceeEEEEEeeCCEEEeccCCccCC
Confidence            99999999999999999999999999999999999999996654432222  2678999999999999999999999999


Q ss_pred             cccCCCCCCCCcccHHHHHHHHHHHHHHhccCCCceeEEEEeecCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccch
Q 021435          157 ISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKNRKELYTAELKEFQRKRERILQQLASLQSERMVDKT  236 (312)
Q Consensus       157 i~~G~~~~~~~~~~~l~~a~~vi~~ri~~~~~~~i~FslmAL~~d~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~  236 (312)
                      |+||+|..   +++|++.++|||++||++|++|+|||||||||+|++   ..+|..+++.++.++.++....        
T Consensus       183 I~lg~~~~---eqeW~d~vrpVIqeRi~~ys~gEIrFNLMAvV~dRk---~a~l~~~~~~~e~l~~~l~~~~--------  248 (328)
T KOG2778|consen  183 IDLGPCEK---EQEWLDKVRPVIQERIQRYSEGEIRFNLMAVVPDRK---TAELKELQRKREILLQQLQKQE--------  248 (328)
T ss_pred             cccCCCCc---cHhHHHHHHHHHHHHHhhCCcceeEEEEEEEeccch---HHHHHHHHHHHHHHHHHHHhhh--------
Confidence            99999986   269999999999999999999999999999999998   5566666777777776664311        


Q ss_pred             hhhHhhhhHHHHHHhHHHHHHHHHHHHHHHhhhHHHHhcccCCcHHHHHHHHHHHHhcCCchHHHHHHHHhhc
Q 021435          237 SFEALNKSLSEVNAGIEGATEKILMEEEKFKKWRTENIRRKHNYIPFLFNFLKILAEKKQLKPLIEKAKQKTS  309 (312)
Q Consensus       237 ~~~~~~~~~~~~~~~i~~~~~~i~~E~~k~~~~~~En~rRrhny~pfi~~~lk~la~~g~L~~l~~~a~~~~~  309 (312)
                           .....+.+.+|+.+++.|..|++|+.+|+.||+||||||.||+++++|.||++|+|.+++++|+.+..
T Consensus       249 -----~~~~~~~q~~ia~~~~~i~~e~~K~~~~k~en~rr~hny~pfl~ellk~lae~~~L~~~~~kak~~~~  316 (328)
T KOG2778|consen  249 -----ATEADKEQSEIANLSSHIRPEDEKLKRYKKENIRRKHNYLPFLVELLKILAEEGQLAPLVEKAKPKSM  316 (328)
T ss_pred             -----ccchhhhhhhhcccccccCcchhHhhhcchhhhhhhhcccHHHHHHHHHHhhhcchhhhhhhhcchhh
Confidence                 01112256788888889999999999999999999999999999999999999999999999987654

>PF01088 Peptidase_C12: Ubiquitin carboxyl-terminal hydrolase, family 1; InterPro: IPR001578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG1415 consensus Ubiquitin C-terminal hydrolase UCHL1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query312
3ihr_A328 Crystal Structure Of Uch37 Length = 328 8e-75
3ris_A245 Crystal Structure Of The Catalytic Domain Of Uchl5, 7e-60
3a7s_A228 Catalytic Domain Of Uch37 Length = 228 3e-56
3tb3_A229 Crystal Structure Of The Uch Domain Of Uch-L5 With 1e-55
3rii_A233 Crystal Structure Of The Catalytic Domain Of Uchl5, 8e-55
1xd3_A230 Crystal Structure Of Uchl3-Ubvme Complex Length = 2 2e-13
3irt_A228 Crystal Structure Of The I93m Mutant Of Ubiquitin C 2e-11
2len_A231 Solution Structure Of Uchl1 S18y Variant Length = 2 3e-11
3ifw_A228 Crystal Structure Of The S18y Variant Of Ubiquitin 5e-11
2etl_A228 Crystal Structure Of Ubiquitin Carboxy-terminal Hyd 5e-11
2wdt_A232 Crystal Structure Of Plasmodium Falciparum Uchl3 In 1e-08
>pdb|3IHR|A Chain A, Crystal Structure Of Uch37 Length = 328 Back     alignment and structure 
Iteration: 1

 Score =  276 bits (707), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 145/296 (48%), Positives = 201/296 (67%), Gaps = 26/296 (8%)
Query: 20  RPVYGLIFLFKWRPGEKDDRVVIKDPN-PNLFFASQVINNACATQAILSILLNCP--DID 76
           +PV+GLIFLFKW+PGE+    V++D     +FFA QVINNACATQAI+S+LLNC   D+ 
Sbjct: 47  KPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVH 106
Query: 77  IGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAGKDDDVYHF 136
           +G  LS+ KEF+++F    KGLA++NSD IR  HNSFAR + F   + K + K++D +HF
Sbjct: 107 LGETLSEFKEFSQSFDAAXKGLALSNSDVIRQVHNSFARQQXF-EFDTKTSAKEEDAFHF 165
Query: 137 ISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLM 196
           +SY+PV+G LYELDGL+EGPI LG C       DW+  V+PVI++RI++YS+ EIRFNL 
Sbjct: 166 VSYVPVNGRLYELDGLREGPIDLGACNQD----DWISAVRPVIEKRIQKYSEGEIRFNLX 221
Query: 197 AVIKNRKELYTAELKEFQRKRERILQQLASLQSERMVDKTSFEALNKSLSEVNAGIEGAT 256
           A++ +RK +Y  ++ E QR       QLA        +    +  N  LS + +  E A 
Sbjct: 222 AIVSDRKXIYEQKIAELQR-------QLAE-------EPXDTDQGNSXLSAIQS--EVAK 265
Query: 257 EKILMEEE--KFKKWRTENIRRKHNYIPFLFNFLKILAEKKQLKPLIEKAKQKTSS 310
            + L+EEE  K K+++ ENIRRKHNY+PF+   LK LAE +QL PL+EKAK+K ++
Sbjct: 266 NQXLIEEEVQKLKRYKIENIRRKHNYLPFIXELLKTLAEHQQLIPLVEKAKEKQNA 321
>pdb|3RIS|A Chain A, Crystal Structure Of The Catalytic Domain Of Uchl5, A Proteasome- Associated Human Deubiquitinating Enzyme, Reveals An Unproductive Form Of The Enzyme Length = 245 Back     alignment and structure
>pdb|3A7S|A Chain A, Catalytic Domain Of Uch37 Length = 228 Back     alignment and structure
>pdb|3TB3|A Chain A, Crystal Structure Of The Uch Domain Of Uch-L5 With 6 Residues Deleted Length = 229 Back     alignment and structure
>pdb|3RII|A Chain A, Crystal Structure Of The Catalytic Domain Of Uchl5, A Proteasome- Associated Human Deubiquitinating Enzyme, Reveals An Unproductive Form Of The Enzyme Length = 233 Back     alignment and structure
>pdb|1XD3|A Chain A, Crystal Structure Of Uchl3-Ubvme Complex Length = 230 Back     alignment and structure
>pdb|3IRT|A Chain A, Crystal Structure Of The I93m Mutant Of Ubiquitin Carboxy-Te Hydrolase L1 Length = 228 Back     alignment and structure
>pdb|2LEN|A Chain A, Solution Structure Of Uchl1 S18y Variant Length = 231 Back     alignment and structure
>pdb|3IFW|A Chain A, Crystal Structure Of The S18y Variant Of Ubiquitin Carboxy T Hydrolase L1 Bound To Ubiquitin Vinylmethylester Length = 228 Back     alignment and structure
>pdb|2ETL|A Chain A, Crystal Structure Of Ubiquitin Carboxy-terminal Hydrolase L1 (uch-l1) Length = 228 Back     alignment and structure
>pdb|2WDT|A Chain A, Crystal Structure Of Plasmodium Falciparum Uchl3 In Complex With The Suicide Inhibitor Ubvme Length = 232 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query312
3ihr_A328 Ubiquitin carboxyl-terminal hydrolase isozyme L5; 1e-97
3rii_A233 Ubiquitin carboxyl-terminal hydrolase isozyme L5; 1e-72
2wdt_A232 Ubiquitin carboxyl-terminal hydrolase L3; hydrolas 2e-66
1cmx_A235 Protein (ubiquitin YUH1-UBAL); ubiquitin hydrolase 4e-61
4dm9_A228 Ubiquitin carboxyl-terminal hydrolase isozyme L1; 3e-60
1xd3_A230 Ubiquitin carboxyl-terminal esterase L3; enzyme-li 9e-60
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
>3ihr_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; center for eukaryotic structural genomics, UCH37, UCH-L5, ubiquitin hydrolase, proteasome, INO80; 2.95A {Homo sapiens} Length = 328 Back     alignment and structure
 Score =  290 bits (742), Expect = 1e-97
 Identities = 146/311 (46%), Positives = 209/311 (67%), Gaps = 22/311 (7%)

Query: 4   QVEELYSLDLDSLNNLRPVYGLIFLFKWRPGEKDDRVVIKD-PNPNLFFASQVINNACAT 62
           QVEE++SL+ ++   L+PV+GLIFLFKW+PGE+    V++D     +FFA QVINNACAT
Sbjct: 31  QVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINNACAT 90

Query: 63  QAILSILLNCP--DIDIGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFV 120
           QAI+S+LLNC   D+ +G  LS+ KEF+++F   +KGLA++NSD IR  HNSFAR + F 
Sbjct: 91  QAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFE 150

Query: 121 PEEQKAAGKDDDVYHFISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQMVQPVIQ 180
            + + +A K++D +HF+SY+PV+G LYELDGL+EGPI LG C       DW+  V+PVI+
Sbjct: 151 FDTKTSA-KEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQD----DWISAVRPVIE 205

Query: 181 ERIERYSKSEIRFNLMAVIKNRKELYTAELKEFQRKRERILQQLASLQSERMVDKTSFEA 240
           +RI++YS+ EIRFNLMA++ +RK +Y  ++ E QR+                      + 
Sbjct: 206 KRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEPMDT--------------DQ 251

Query: 241 LNKSLSEVNAGIEGATEKILMEEEKFKKWRTENIRRKHNYIPFLFNFLKILAEKKQLKPL 300
            N  LS + + +      I  E +K K+++ ENIRRKHNY+PF+   LK LAE +QL PL
Sbjct: 252 GNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPL 311

Query: 301 IEKAKQKTSSS 311
           +EKAK+K ++ 
Sbjct: 312 VEKAKEKQNAK 322
>3rii_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; alpha-beta-alpha fold, thiol hydroalse, cysteine protease, deubiquitinating enzyme; 2.00A {Homo sapiens} PDB: 3ris_A 3sqa_A 3tb3_A 3a7s_A Length = 233 Back     alignment and structure
>2wdt_A Ubiquitin carboxyl-terminal hydrolase L3; hydrolase-protein binding complex, enzyme-ligand complex, UB isopeptidase, UCH-L superfamily, cystein proteinase, peptid hydrolase; 2.30A {Plasmodium falciparum} PDB: 2we6_A Length = 232 Back     alignment and structure
>1cmx_A Protein (ubiquitin YUH1-UBAL); ubiquitin hydrolase, deubiquitinating enzyme, cysteine protease, enzyme specificity; 2.25A {Synthetic} SCOP: d.3.1.6 Length = 235 Back     alignment and structure
>4dm9_A Ubiquitin carboxyl-terminal hydrolase isozyme L1; ubiquitin hydrolase, ligase, hydrolase, ligase-inhibitor COM; HET: PHQ GME; 2.35A {Homo sapiens} PDB: 3kw5_A 2etl_A* 3irt_A 3kvf_A 3ifw_A Length = 228 Back     alignment and structure
>1xd3_A Ubiquitin carboxyl-terminal esterase L3; enzyme-ligand complex, active site crossover loop, hydrolase; HET: GVE; 1.45A {Homo sapiens} SCOP: d.3.1.6 PDB: 1uch_A* Length = 230 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query312
3ihr_A328 Ubiquitin carboxyl-terminal hydrolase isozyme L5; 100.0
3rii_A233 Ubiquitin carboxyl-terminal hydrolase isozyme L5; 100.0
1xd3_A230 Ubiquitin carboxyl-terminal esterase L3; enzyme-li 100.0
4dm9_A228 Ubiquitin carboxyl-terminal hydrolase isozyme L1; 100.0
2wdt_A232 Ubiquitin carboxyl-terminal hydrolase L3; hydrolas 100.0
1cmx_A235 Protein (ubiquitin YUH1-UBAL); ubiquitin hydrolase 100.0
>3ihr_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; center for eukaryotic structural genomics, UCH37, UCH-L5, UB hydrolase, proteasome, INO80; 2.95A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=2.4e-91  Score=666.24  Aligned_cols=291  Identities=50%  Similarity=0.895  Sum_probs=232.0

Q ss_pred             CCEEEEeccCChhhhhccCCceEEEEEeecCCCCcccccccc-CCCCCccchhhhhhhhhHHHHHHHhhcCCC--CCCCC
Q 021435            2 HMQVEELYSLDLDSLNNLRPVYGLIFLFKWRPGEKDDRVVIK-DPNPNLFFASQVINNACATQAILSILLNCP--DIDIG   78 (312)
Q Consensus         2 gv~f~DVysLD~~~L~~~~Pv~alIfLFp~~~~~~~~~~~~~-~~~~~v~FakQtI~NACgT~AlLh~l~N~~--~i~lg   78 (312)
                      ||+|+||||||+++|++++|||||||||||++..+....... ...++|||+||||+||||||||||+|+|++  .|.+|
T Consensus        29 ~~~f~DVysLD~e~L~~l~Pv~alIfLFp~~~~~e~~~~~~~~~~~~~v~f~kQtI~NACGT~ALLh~l~N~~~~~I~~G  108 (328)
T 3ihr_A           29 GAQVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLG  108 (328)
T ss_dssp             SEEEEECCCCCHHHHHTTCSEEEEEEEEECCSCCCCSSEECCSTTTTTSCCCCCCSGGGHHHHHHHHHHHTCCCTTCBCH
T ss_pred             ceEEEEeccCCHHHHhcccCceEEEEEEecCchhhhcccccccCcccccchHHHhccchHHHHHHHHHHHcCCcccCCCC
Confidence            579999999999999999999999999999875443322222 223579999999999999999999999986  49999


Q ss_pred             cchHHHHHHhcCCChhhHHhhhcCCHHHHHHHHhcCCCCCCCccccccCCCCCCcceEEEEEeeCCeEEeecCCCCCCcc
Q 021435           79 PELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAGKDDDVYHFISYIPVDGVLYELDGLKEGPIS  158 (312)
Q Consensus        79 s~L~~f~~~t~~~~p~~Rg~~L~ns~~i~~~Hns~A~~g~~~~~~~~~~~~~~~~~HFI~fV~~~G~lyELDGlk~gPi~  158 (312)
                      |.|++|+++|.+|+|++||.+|+|++.|+.+|||||++|++..+ ++++.+++++||||||||+||+||||||||+|||+
T Consensus       109 s~L~~f~~~t~~l~P~~Rg~~L~ns~~i~~aHns~A~~g~~~~d-t~~~~~d~~~~HFIafV~~dG~LyELDG~k~gPI~  187 (328)
T 3ihr_A          109 ETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFD-TKTSAKEEDAFHFVSYVPVNGRLYELDGLREGPID  187 (328)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHTCHHHHHHHHTTC------------------CEEEEEEEEETTEEEEEETTSSSCEE
T ss_pred             cHHHHHHHHhcCCCHHHHHHHHhcCHHHHHHHHHHhccCCccCC-CCCCCCcCcceeEEEEEeeCCEEEEcCCCCCCCcc
Confidence            99999999999999999999999999999999999999966432 23344566789999999999999999999999999


Q ss_pred             cCCCCCCCCcccHHHHHHHHHHHHHHhccCCCceeEEEEeecCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhh
Q 021435          159 LGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKNRKELYTAELKEFQRKRERILQQLASLQSERMVDKTSF  238 (312)
Q Consensus       159 ~G~~~~~~~~~~~l~~a~~vi~~ri~~~~~~~i~FslmAL~~d~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~  238 (312)
                      ||+|++    ++||++|+++|++||++|++++++|||||||+|++..|+++|+.+++.+.       .   ..    ...
T Consensus       188 hG~~~~----e~~l~~a~~vi~~ri~~y~~~eirFslmAL~~d~~~~~~~~l~~l~~~~~-------~---~~----~~~  249 (328)
T 3ihr_A          188 LGACNQ----DDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQRQLA-------E---EP----MDT  249 (328)
T ss_dssp             EEECBT----TBCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECHHHHHHHHHHHHHHHHH-------H---SC----CCC
T ss_pred             cCCCCc----hhHHHHHHHHHHHHHHhcCCCCceEEEEEecCChHHHHHHHHHHHHhhhh-------c---cc----ccc
Confidence            999985    79999999999999999988899999999999999999999998854211       0   00    011


Q ss_pred             hHhhhhHHHHHHhHHHHHHHHHHHHHHHhhhHHHHhcccCCcHHHHHHHHHHHHhcCCchHHHHHHHHhhccC
Q 021435          239 EALNKSLSEVNAGIEGATEKILMEEEKFKKWRTENIRRKHNYIPFLFNFLKILAEKKQLKPLIEKAKQKTSSS  311 (312)
Q Consensus       239 ~~~~~~~~~~~~~i~~~~~~i~~E~~k~~~~~~En~rRrhny~pfi~~~lk~la~~g~L~~l~~~a~~~~~~~  311 (312)
                      +.....+.+++.+|..+++.|++|++||++|+.||+||||||+|||+++||.||++|+|++|+++|++|++++
T Consensus       250 ~~~~~~~~~~~~ei~~~~~~l~~E~~kr~~w~~En~rRrhny~pfi~~llk~la~~~~l~~~~e~ak~~~~~~  322 (328)
T 3ihr_A          250 DQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQNAK  322 (328)
T ss_dssp             ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHGGGSSSTTTTTC-----------
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            1223456778999999999999999999999999999999999999999999999999999999999887653
>3rii_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; alpha-beta-alpha fold, thiol hydroalse, cysteine protease, deubiquitinating enzyme; 2.00A {Homo sapiens} SCOP: d.3.1.0 PDB: 3ris_A 3sqa_A 3tb3_A 3a7s_A Back     alignment and structure
>1xd3_A Ubiquitin carboxyl-terminal esterase L3; enzyme-ligand complex, active site crossover loop, hydrolase; HET: GVE; 1.45A {Homo sapiens} SCOP: d.3.1.6 PDB: 1uch_A* Back     alignment and structure
>4dm9_A Ubiquitin carboxyl-terminal hydrolase isozyme L1; ubiquitin hydrolase, ligase, hydrolase, ligase-inhibitor COM; HET: PHQ GME; 2.35A {Homo sapiens} PDB: 3kw5_A 2etl_A* 3irt_A 3kvf_A 3ifw_A 2len_A Back     alignment and structure
>2wdt_A Ubiquitin carboxyl-terminal hydrolase L3; hydrolase-protein binding complex, enzyme-ligand complex, UB isopeptidase, UCH-L superfamily, cystein proteinase, peptid hydrolase; 2.30A {Plasmodium falciparum} PDB: 2we6_A Back     alignment and structure
>1cmx_A Protein (ubiquitin YUH1-UBAL); ubiquitin hydrolase, deubiquitinating enzyme, cysteine protease, enzyme specificity; 2.25A {Synthetic} SCOP: d.3.1.6 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 312
d2etla1223 d.3.1.6 (A:1-223) Ubiquitin carboxyl-terminal hydr 4e-68
d1xd3a_229 d.3.1.6 (A:) Ubiquitin carboxyl-terminal hydrolase 1e-65
d1cmxa_229 d.3.1.6 (A:) Ubiquitin carboxyl-terminal hydrolase 3e-54
>d2etla1 d.3.1.6 (A:1-223) Ubiquitin carboxyl-terminal hydrolase isozyme l1 {Human (Homo sapiens) [TaxId: 9606]} Length = 223 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase UCH-L
domain: Ubiquitin carboxyl-terminal hydrolase isozyme l1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  210 bits (535), Expect = 4e-68
 Identities = 51/207 (24%), Positives = 95/207 (45%), Gaps = 22/207 (10%)

Query: 4   QVEELYSLDLDSLNNL-RPVYGLIFLFKWRPG------EKDDRVVIKDPNPNLFFASQVI 56
           +  ++  L+ +SL ++  P   L+ LF           ++ + +  ++ +P ++F  Q I
Sbjct: 27  RFVDVLGLEEESLGSVPAPACALLLLFPLTAQHENFRKKQIEELKGQEVSPKVYFMKQTI 86

Query: 57  NNACATQAILSILLNCPD---IDIGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSF 113
            N+C T  ++  + N  D    + G  L +    T+   PE +      ++AI+AAH++ 
Sbjct: 87  GNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSETEKMSPEDRAKCFEKNEAIQAAHDAV 146

Query: 114 ARPEPFVPEEQKAAGKDDDVYHFISYIPVDGVLYELDGLKEGPISLGPCTGGQGDMDWLQ 173
           A+      +       D   +HFI +  VDG LYELDG    P++ G  +        L+
Sbjct: 147 AQEGQCRVD-------DKVNFHFILFNNVDGHLYELDGRMPFPVNHGASSED----TLLK 195

Query: 174 MVQPVIQERIERYSKSEIRFNLMAVIK 200
               V +E  E   + E+RF+ +A+ K
Sbjct: 196 DAAKVCREFTE-REQGEVRFSAVALCK 221
>d1xd3a_ d.3.1.6 (A:) Ubiquitin carboxyl-terminal hydrolase UCH-l3 {Human (Homo sapiens) [TaxId: 9606]} Length = 229 Back     information, alignment and structure
>d1cmxa_ d.3.1.6 (A:) Ubiquitin carboxyl-terminal hydrolase UCH-l3 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 229 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query312
d1xd3a_229 Ubiquitin carboxyl-terminal hydrolase UCH-l3 {Huma 100.0
d2etla1223 Ubiquitin carboxyl-terminal hydrolase isozyme l1 { 100.0
d1cmxa_229 Ubiquitin carboxyl-terminal hydrolase UCH-l3 {Synt 100.0
>d1xd3a_ d.3.1.6 (A:) Ubiquitin carboxyl-terminal hydrolase UCH-l3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase UCH-L
domain: Ubiquitin carboxyl-terminal hydrolase UCH-l3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.1e-68  Score=482.16  Aligned_cols=191  Identities=30%  Similarity=0.447  Sum_probs=169.8

Q ss_pred             CCEEEEeccCChhhhhcc-CCceEEEEEeecCCCCcccc--------ccccCCCCCccchhhhhhhhhHHHHHHHhhcCC
Q 021435            2 HMQVEELYSLDLDSLNNL-RPVYGLIFLFKWRPGEKDDR--------VVIKDPNPNLFFASQVINNACATQAILSILLNC   72 (312)
Q Consensus         2 gv~f~DVysLD~~~L~~~-~Pv~alIfLFp~~~~~~~~~--------~~~~~~~~~v~FakQtI~NACgT~AlLh~l~N~   72 (312)
                      ||+|+||||||+++|+++ +|||||||||||++..+..+        ....+.+++|||+||||+||||||||||+|+|+
T Consensus        27 ~~~f~Dvysld~d~L~~ip~Pv~avI~Lfp~~~~~e~~~~~~~~~~~~~~~~~~~~v~f~kQti~NACgT~Allh~l~N~  106 (229)
T d1xd3a_          27 NWQFVDVYGMDPELLSMVPRPVCAVLLLFPITEKYEVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANN  106 (229)
T ss_dssp             TEEEEECCCSSHHHHTTSCSCEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCTTCCCCCCCSBTCHHHHHHHHHHHTT
T ss_pred             CCEEEEeccCCHHHHhhcCCCcEEEEEEEECCchhhhhhcccccccccccCCCCccceehhhhhhhhhHHHHHHHHHhcC
Confidence            689999999999999999 99999999999987433211        112234567999999999999999999999999


Q ss_pred             CC---CCCCcchHHHHHHhcCCChhhHHhhhcCCHHHHHHHHhcCCCCCCCccccccCCCCCCcceEEEEEeeCCeEEee
Q 021435           73 PD---IDIGPELSKLKEFTKNFPPELKGLAINNSDAIRAAHNSFARPEPFVPEEQKAAGKDDDVYHFISYIPVDGVLYEL  149 (312)
Q Consensus        73 ~~---i~lgs~L~~f~~~t~~~~p~~Rg~~L~ns~~i~~~Hns~A~~g~~~~~~~~~~~~~~~~~HFI~fV~~~G~lyEL  149 (312)
                      ++   |.+||.|++|+++|++|+|++||++|+|++.|+.+||+||++|++..    ++.+++++|||||||++||+||||
T Consensus       107 ~~~~~i~~gs~L~~f~~~t~~~~p~eRg~~l~~~~~l~~aH~s~A~~g~t~~----p~~~~~~~~HFI~fV~~~G~lyEL  182 (229)
T d1xd3a_         107 KDKMHFESGSTLKKFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTEA----PSIDEKVDLHFIALVHVDGHLYEL  182 (229)
T ss_dssp             GGGCCBCTTCHHHHHHHHHTTSCHHHHHHHHHTCHHHHHHHHHHHTCSSSCC----CCTTSCCCEEEEEEEEETTEEEEE
T ss_pred             ccccccCCcHHHHHHHHHcCCCCHHHHHHHhhcCHHHHHHHHHhccccCCCC----CCcccccceeEEEEEeeCCEEEEc
Confidence            76   78899999999999999999999999999999999999999998643    233455679999999999999999


Q ss_pred             cCCCCCCcccCCCCCCCCcccHHHHHHHHHHHHHHhccCCCceeEEEEeecC
Q 021435          150 DGLKEGPISLGPCTGGQGDMDWLQMVQPVIQERIERYSKSEIRFNLMAVIKN  201 (312)
Q Consensus       150 DGlk~gPi~~G~~~~~~~~~~~l~~a~~vi~~ri~~~~~~~i~FslmAL~~d  201 (312)
                      ||||+|||+||++++    ++|+++|+++||+||+++ +++++||||||++.
T Consensus       183 DG~k~~Pi~hG~~~~----~~~l~~a~~vi~~~~~~~-~~~~~FsllAl~~s  229 (229)
T d1xd3a_         183 DGRKPFPINHGETSD----ETLLEDAIEVCKKFMERD-PDELRFNAIALSAA  229 (229)
T ss_dssp             CTTSSSCEEEEECCT----TTHHHHHHHHHHHHHHHS-TTCCCCEEEEEEEC
T ss_pred             cCCCCCCcccCCCCc----hhHHHHHHHHHHHHHHhC-CCceEEEEEEEecC
Confidence            999999999999986    789999999999999996 68999999999974
>d2etla1 d.3.1.6 (A:1-223) Ubiquitin carboxyl-terminal hydrolase isozyme l1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cmxa_ d.3.1.6 (A:) Ubiquitin carboxyl-terminal hydrolase UCH-l3 {Synthetic, based on Saccharomyces cerevisiae sequence} Back     information, alignment and structure